Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 45 of 129
Found at i:6009035 original size:26 final size:26
Alignment explanation
Indices: 6008999--6009051 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
6008989 GTTGACTTAG
*
6008999 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* **
6009025 GCATACAGAGTTGATTCTTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6009051 G
1 G
6009052 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6009507 original size:903 final size:900
Alignment explanation
Indices: 6002019--6019439 Score: 19077
Period size: 895 Copynumber: 19.7 Consensus size: 900
6002009 GATGGGATTA
* * * * *
6002019 GGGTTCTG-CGATCGGGGGGCC-AGGGGGTGTGCGCACATGATGTACGATTGTTGCTGGTACTTG
1 GGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
6002082 GCCCTTATATCGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
66 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
6002147 AAGATTTTACAGGTTTGCTCCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
131 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * * * *
6002212 GGTCACAAAATGTTGTACACTTTGAGATTTTAGCTGAATTTCTTTGTACCA-GCCAAGAAAAATA
196 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT-GCATGCCAACAAAAATA
*
6002276 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAATTTTAAAAAATCCCGAA
260 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * * *
6002340 -CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAGCTTCACATG
325 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
6002404 AAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
390 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
*
6002469 AAGCTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
455 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
6002534 GGCGTAGTGCCCGCCTGCCCACCCG-CCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCA
520 GACGTAGTGCCC-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * **
6002598 TTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGTAGGAT-TGCAGCACGTAGAGGGGG
583 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGG
* * * *
6002662 ACCCGACCGATCCCCGGCTTGCGCATCCC-CCCCTCTGGTCGGCTGAGC-CCCGTACACTCGTTT
648 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * * *
6002725 CGTGGGTTAACTTAGGCATATGGAGTTCATTACCAGTCTAAGCATACGGAGTTAATTCCCAATCT
713 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * *
6002790 AAGATTGAACCAGAACGAGGGTTGCGGCAGTACAT-CTGGGCTCGGGCATGTGCTGGTGCCGCAT
778 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAT
* * * * *
6002854 TTTTCTTCGTCAGGGCACCATTGCCGGAGCATCGTCGGAGAACCTGATCGACGGCATTG
843 TTTTCTTCCT-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* * *
6002913 GGGTTCCG-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGATGTTGGTATTT
1 GGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
6002977 GGCCCTTATATT-GCCCCCTATACCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
6003041 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
130 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
6003106 TGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
195 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * ** * *
6003171 AAAGGATCATGTCTACCAAGTTCAGAGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAA
260 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
**
6003236 CCAAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
325 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
6003301 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATG
390 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
*
6003366 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCC
455 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-C
* *
6003431 CGGCGTAATG--CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
519 CGACGTAGTGCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
** * ** * * *
6003494 TCCCAG-CTAAGATCGGACCAGACTAAGGGTTGTGGTAGTTGGATCGGCAACACGCA-AAGGGGA
584 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGA
* * * * * * * * **
6003557 CCCGACCGATCCCCGGCTTGTGTAGCTCACCCCTCTGGCTGGCTGAGCACCCGCATACTCGTTTC
649 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * *
6003622 ATGGGTTGACTCAGGCATAC-GAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCTAGTCT-
714 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
6003685 -GA---GATCGGACCGAGGATTGCAGTAGCACATGCTGGGCTCGGGCAGGTGCTGGTGCCGCATT
779 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATT
* * * *
6003746 TTTCTTCGTCGGGCA-CA---T----GC--CGTC-GAGAACCT-AACGACGACATTG
844 TTTCTTCCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* * * * *
6003791 GGG-TCCGGACGATTGGGGGGCCGGGGGGTGTATGCACAAATTTTGATGTTCGA--GGTGCTGGT
1 GGGTTCC-GACGATCGGGGGGCCGGGGGG-GTGTGCGCACA---TGATGTGCGATGGGTGCTGGT
* *
6003853 ACTTGGCCCTTATAATTGGGCCCTCTAT-CCTCATC-AACCTTGAGCAA-TCACACCCCCTTAAA
61 ACTTGGCCCTTAT-ATT-GGCCCCCTATCCCTCATCAAACCTCGAG-AACTCACACCCCCTTAAA
* * *
6003915 GGAGCACTTTGAGATTTTA-AAGTTTGGCTGCTAGTA-CCATGTAAAAGTGTCTAAAATGGGGAC
123 -GAGCA-TTTGAGATTTTACAGGTTT-GCTGCCAGTAGCCAT-T-AAAGTGTCTGAAATGGGGAC
* *
6003978 AC-TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCAT-
183 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * * * *
6004041 TCAAGAAAAATAAAAGGAGCACGTCTACCAAGTTTGGGGCCAAAATTCCTTTCGAATAAATTTAA
248 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * ** * *
6004106 AAAAATCCCAAACCGGAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATG
313 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
6004171 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
378 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
6004236 CACAAAAATATGAAGATGTGCCTAAAACCACCTACCACCTTATCGAGCCACGACTTGCGCATCCC
443 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
6004301 GTCTCTTTGGCTGACGTAATGCCCCCTCGCCCTCGCCCGTCCGCTTGTTTCGTCGGTTGGCTTAG
508 GTCTCTCTGGCCGACGTAGTG-CCCC-CG-CC-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* *
6004366 GCATACGGAGTTCATTCCCAG-CTAAGATCGGACCAGATCGAGGG-TGTTGGCAGCAGGATCAGC
569 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTG-TGGCAGCAGGATCGGC
* * * * ** * *
6004429 AGCACATAGAGGGGGACCCAACCGATCCCCGGCTTGCGTAGGCCGCCCCTTTGGCCGACTGAGCG
633 AGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
6004494 CCCGCATGTTCGTTTTGTGGGTTGACTCAGGCATACGGAGTTCATTCCCAGTCTAA-CATACGGA
698 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * *
6004558 GTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACAGG-AGCACATGTTGGGCTCAGGCA
763 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC-GGCAGCACATGCTGGGCTCGGGCA
* * *
6004622 TGTGCTGGTGTCC-CATTTTTCTTCCCTGAGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
827 TGTGCTGGTG-CCGTATTTTTCTT-CCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
*
6004686 CGGCGGCATTG
890 CGACGGCATTG
* * * *
6004697 GGGTTCCGGCGATTGGGGGGGCC-GAGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTACTT
1 GGGTTCCGACGA-TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
6004761 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCC-TAAAGAGCATT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
6004824 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACATTTTTTTCAAA
130 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* ** *
6004889 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTAAGCATGCCAAGAAAAATA
195 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * * *
6004954 AAAGGATCACGTCTATCAAGTTTGGGGCCAAAATTCCTTCCGAATAAATTTAAAAAAATCCCAAA
260 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* ** * * *
6005019 CCGGAAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCAAGT
325 CC-GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* ** *
6005084 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCATGCAGAAATGT
389 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
* * *
6005149 GAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGACTTGCGCGTCCCGTCTCTCTGGC
454 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * * *
6005214 CGGCGTAGT------GCCTGCCCGCCCACTTGTTTCATCGGATGGCTTAGGCATACGGAGTTCAT
519 CGACGTAGTGCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * ** ** **
6005273 TCCCAATCTAAGATCGGACCGGACTGAGGGTTACGATAGCAGGATCGGCAGCACGTAGAGGGGGA
584 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGA
* * * * * * * *
6005338 CCC-AGTTGATCCTCGGCTTACGCATCCCGCCCTTCTGGCCGGTTGAGCGGCCTCACGCCCGTTT
649 CCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * *
6005402 CGTGGGTTGACGTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGCTCTTTCCCAGTCT
713 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * *** * *
6005467 AAAATCGGACCAGATCGAGGGTTGTTACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCAT
778 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAT
* * * **
6005532 TTTTCTTCGTCGGTGCACCATCATCGGAGCATCACCGGAGAACCTGACCGACGGCATTG
843 TTTTCTTCCT-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* *
6005591 GGGTTCCGGCAATCGGGGGGGCCGAGGGGGGTGTGCGCA-A--A--T--GAT--GTG-T-G-A--
1 GGGTTCCGACGATC-GGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
6005642 TGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTCAAA-AGCA
64 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCA
*
6005706 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAATGGGGACATTTTTTTC
128 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTC
*
6005770 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA-ATAA
192 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA-AA
* ** * ** * *
6005834 AATACAAGGATCACGTCGACCAAGTTTGGGGTGAAAAATCCTTTTGAAAAAATTTAAAAAAATCT
256 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* *
6005899 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAGCTTCA
321 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
6005964 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
386 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
* ** **
6006029 TAAGAAGATGCACCTAAACCCACCTACCACCCTATCGATCCATTGCTTGCGCATCCCGTCTCTCT
451 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * *
6006094 GGCCGATGTAGTGCCCGCCCGCCCGCCTGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAG
516 GGCCGACGTAGTG-CC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * * *
6006159 TTTATTCCAAGTCTAAGATCAGACCAGACCGAAGGTTGTGGAATCTA-GATCAGCAGCATACAGA
579 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGC-AGGATCGGCAGCACACAGA
* * ** * * * * *
6006223 GGGGGACCAGATTGATCCTTGGGTTGTGCATCCCGCCCCTCTGGCAGGCTAAGCGCCCGCACACT
643 GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * *
6006288 CGTTTCGT-GGTTGACTTAGGCATATGGAGTTCATTACCAGTCTAAGCATACGGAGTTCATTGCC
708 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * * *
6006352 AGTCTAAGATTGAACCAGACCGAGGGTTTCGGTAGCACATGCTGGGCTCGGGCATGTACTGGTGC
773 AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * *
6006417 CATTTTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGATGGCATTG
838 CGTATTTTTCTTCCT-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* * *
6006481 GGGTTTCGACGATCGAGGGGGCCGGGGAGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTT
1 GGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
6006546 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTCACACCCCCATAAAGAGCATT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * * * *
6006611 TGAGATTGTACTGGTTTGCTGCCAGTAGCCATCAAAGTGTCTGGAATGGGAACACTTTTTTCAAA
130 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
6006676 TGGTCAC-AAATCCTTGTACACTTCGAGTTTTTAGTTGAATCTTTTTGTGCATGCCAACAAAAAT
195 TGGTCACAAAAT-CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * *
6006740 ACAAAGATCACGTCTACCAAGTTTAGGGCCAAAAC-CCTTTCGAAAAAATTTTAAAAAATCCCGA
259 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* * * * *
6006804 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGGGTCGTCTTACCATGAAACTTCACGC
324 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * *
6006869 GAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATAT
389 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
* *
6006934 AAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
454 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* *
6006999 CGACGTAGTG--CCCGCCCGCCCACCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
519 CGACGTAGTGCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * * ** * *
6007062 TTCTAGTCTAAGA-CTGGATCAGAACGAGGGTTGCGACAGCAGGATCGATAACACATAGAGGGGG
584 TCCCAGTCTAAGATC-GGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGG
* ** * * * * ** *
6007126 ACCCG-GCGATCCCCGATTTACGCGTCCCGCCCCTCTGGCCGGTTGAACGCCCGCTTGCTCATTT
648 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
6007190 CATGGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
713 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * * ***
6007255 AAGATCAGACTGGACCGGGGGTTACGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTACAT
778 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAT
* * * *
6007320 TTTTCTTCACCGGGGCACCATCGTCGGAGCATTGCCGGAGAACCTGATCGACGGCATTG
843 TTTTCTTC-CTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* * * *
6007379 GGATTACGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG-TACTGGGTGCTGGTACT
1 GGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACT
* * *
6007442 TGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAGCCTCTTAAAGAGCAT
64 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
6007507 TTGAGATTTTACAGGTTTG-TCGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCA
129 TTGAGATTTTACAGGTTTGCT-GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * * *
6007571 AATGGTCTCAAAATCTTGTACACTTGGAGTTTTTAGTTGAATTGTTTTGTGCATGCCAAAAAAAA
193 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * *
6007636 TACAACGATCATGTCTACCAAGTTTGGGTCCAAAACTCGTTCCAAAAAAATTTTAAAAAATCCCG
258 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG
* *
6007701 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
323 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * * *
6007766 TGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCTTTGCCACGCAAAAATA
388 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
* * *
6007831 TGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCTTGCGTATCCCCTCTCTCTGG
453 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
** * * *
6007896 CCGGTGTAGTGCCCAC-CCCGCCCGCCCGCTTGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCA
518 CCGACGTAGTGCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * *
6007960 TTCCCAGTCTAAGGTCGGACCGGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGG
583 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGG
* * * *
6008025 ACCCGATCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCCGGTTGAGCACCCGCACGCTCGTTT
648 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
6008090 CGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATAGGGAGTTCATTCCCAGTCT
713 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * * * *
6008155 AAGATTGGATCGAATCGA-GGTTACGGCAGCACATGCTAGGCTTGGGCATGTGCTGGTGCCGCAT
778 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAT
* * * * *
6008219 TTTTCTTCACCGGGGCACCATCATCGGAGGATCGTCGGAGAACTTGACCGATGGCATTG
843 TTTTCTTC-CTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* *
6008278 GGGTTCTGACGAT--------CGGGGGGGTCTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
1 GGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * *
6008335 GCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGTATTT
66 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
6008400 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAAT
131 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
6008465 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAACTA
196 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TA
* * *
6008529 CAAGGATCACGTTTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAA
260 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * *
6008594 CCGTAAAAAGTTTCAAAAATCGTAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
325 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * * **
6008659 AAGGCTTAAGGGAGCACTATGTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
390 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
* * *
6008724 AAGATGTTCCTAAACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCCCTCTCTCTGGCC
455 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * *
6008789 GATGTAGTGCCCGCCGGCCCGCCCGCCCACTCTTTTCATCGGTTGGCTTAGGCATACGAAGTTCA
520 GACGTAGTGCCC-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
** * * * * * * ***
6008854 TTCCCAGTCTAAGATTAGAGCAGATCGAGGGTTATGACAGCAGGATTGGTAGCATGTAGAGGGGG
583 TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGG
* * * * * *
6008919 ACCCGATCGATTCCCGACATGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACACTCGTTT
648 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * * **
6008984 TGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTGATTCTTAGTCT
713 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * *
6009049 AAGATCGGACCGGACTGATGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATAT
778 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAT
*
6009114 TTTCCTTCACTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
843 TTTTCTTC-CTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* *
6009173 GGGTTCCGACGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTTGTACTT
1 GGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
6009238 GGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
** * * * *
6009302 TGAGATTTTGTAGGTTTGCTGCCAATAGCAATTAAGGTGTCTGAAATGTGGACACTTTTTTCAAA
130 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
6009367 TGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATA
195 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * * * **
6009432 CAGGGATCATGTCTAACAAGTTTGCGGCCATAACTCCTTCCGAAAAAATTTTAAAAATTCTTGAA
260 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* *
6009497 CCGCAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
325 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
6009562 AAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACGCAGAAATATG
390 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
* * *
6009627 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGTGCATCCCGTCTCTCTGGCC
455 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
6009692 GACATAGT------GCCCGCCCGCCCGCTTGTTTCGTCCGTTGGCTTAGGTATACGGAGTTCATT
520 GACGTAGTGCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
** ** * * * * *
6009751 CCCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAAAAGGGGAC
585 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGAC
* * * *
6009816 CC-AACGGATCCCCGACTTGCGCATCCCGCCCTTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTC
650 CCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * *
6009880 GTGGGTTGACTTAGGCATAC-GATGTTTATTCGCAGTCTAAGCATACGGAGTTCATTCCCTGTCT
714 GTGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * * ** * *
6009944 AATATCAGACCAGACCAAGGGTTGCGGTAGCACATGCCGGGCTCGGGCACATGCTGGTGCTGCAT
778 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAT
* * *
6010009 TTTTCTTTGCCT-GGGCACCATCGCCGGAGCATCG-CAGGAGAACCTAACCGGCGGCATTG
843 TTTTC-TT-CCTGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTG
*
6010068 GGGTTCCGACAATCGGAGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
1 GGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
6010132 GGCCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCACCCCCTTAAAGAGTATT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
6010197 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAA
130 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
6010262 TGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTGTCCATGCCAA-TAAAATA
195 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* *
6010326 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCGAA
260 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
* * * * * *
6010391 CCGTAAAAAATTTCAAAAATCATGAAAAATAGAAAACGACTGGTCTTGTCATGAAACTTCACGTG
325 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* **
6010456 AAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
390 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
* * * ** *
6010521 AAGATGTGCCTAAACCCACCTACCACCCCATCGATCAACGGTTTGTACATCCCGTATCTC-GGCC
455 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
6010585 -A-GTATAGTGCCCGCCTGTCCGCCCACCCGTCCGCTCGTTTCTTCGGTTGGCTTAGGCATACAG
520 GACG--TAGTG--C-CC---CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* ** * * * * *
6010648 AGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGTGGTAGCAGGATCGGTAGTATACGG
577 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAG
** * * *
6010713 ATAGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGTACGC
642 AGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* *
6010778 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTAGTCTAAGCATACGAAGTTCATGC
707 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAAGCATACGGAGTTCATTC
** ** * *
6010843 CCAAACTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAAGTACTGGT
771 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * * *
6010908 TCTGCATTTTTCTTTGCC-GGGGCACCATCGTCGGAGCATTGTCGGAGAACCTAACCGATGGCAT
836 GCCGTATTTTTC-TT-CCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
6010972 TG
899 TG
* * * *
6010974 AGGTTCTGACGATCGGGGGGGCC-GGGGGGTGTGTGCACATGATGTGCAATGGGTGCTGGTACTT
1 GGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
6011038 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * * *
6011103 TGAGATTTTTCAGGTTTGCTACGAGTAGCCATTAAAGTGTCTGCAATGGGGACACTTTTTTCAAA
130 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
6011168 TGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAA-TAAAATA
195 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
*
6011232 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAA
260 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
*
6011297 CTGCAAAAAGTTTCAAAAATCGTG-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
325 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
6011361 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
390 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
* * * *
6011426 AAGATGTGACTAAACCCACCTACCACCCTATCGATCCACTGCTTGCGCATCCCGTCTCTCTAGCT
455 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
*
6011491 GATGTAGT----------GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
520 GACGTAGTGCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
** * *
6011546 CCCAGTCTAAGATCAAATCAGACCGAGGGTTGTGGCAGTAGGATCGGCAGCACACAGAGGGGGAC
585 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGAC
** * * * ** *
6011611 CCGGCCGATCCCCTGCTTGCACATCCCGCACCTCTGGCCGAATGAGCGCCCGCACGCTAGTTTCG
650 CCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* *
6011676 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATTTAA
715 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * * *
6011741 GATCAGATCGAACCGATGGTTAAGGCAGCACATTCTGGGCTCGGGCATGTGCTGGAGCTGTATTT
780 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTT
* * * * * * *
6011806 CTCTTCGTCGGGGCACCATCGTCGGAGCATTGCCAGAGAACCTGATTC-ACGGTATTG
845 TTCTTCCT-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA-CCGACGGCATTG
6011863 GGGTTCCGACGATCGCGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
1 GGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * * *
6011928 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTTACACCCTCTGAAAGAGCATT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
6011993 TGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAA
130 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
6012058 TGGTCACAAAATCTTGTACACTAT-GAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAAT
195 TGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * * * *
6012122 ACAAGGATCACATCTACCAAGTTTAGGGCCAAAACGCCTTTCGAAAGAATTTTAAAAAATCTCGA
259 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* ** * *
6012187 ACCGCAAAAGGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAAGTTCACGT
324 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
6012252 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATAT
389 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
* * *
6012317 GAA-AAGTGCCTAAACCCACCTACCACCCTATCGATCGACAGCTTGCGCATACCCGTCTCTCTGG
454 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCCGTCTCTCTGG
* *
6012381 CCGGCGTAGTGCCCGCC-CGCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTT
518 CCGACGTAGTGCCC-CCGC-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * *
6012445 CATTCCCAGTCTAAGATCGGACCCGACCGAGGGTTGCGGCAGCAGGATTGGCAACACGCAGAGGC
581 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGG
* * * * * *
6012510 GGACCCGGTCGAT-CCCGACTTGCGCAT-----CCCTCTGGCCGGCTGAGTGCTCGCATGCTCAT
646 GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
6012569 TTCGTGGGTTGAC-T-----TA--G-G--------CA---T-A-C--A--GAGTTCATTCCCAGT
711 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * *
6012608 CTAAGATCGGATCGGACCGAGGTTTACGGCAGCACATGCTTGGCTCGGGCATGTGCTGGTGCCGT
776 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGT
* * * * * * *
6012673 ATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGCCAGA-AACCTGATCCG-CAGCAATCG
841 ATTTTTCTTCCT-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA-CCGACGGC-ATTG
* * *
6012734 GGG-T--GACGATCGGGGGG--GGTCGTGGTTGTGCGCACATGAT-TGTCGAT-GGTGC-GGTTC
1 GGGTTCCGACGATCGGGGGGCCGG--GGGGGTGTGCGCACATGATGTG-CGATGGGTGCTGGTAC
* *
6012791 TTGGCCATTATATTGG-GCCCTATCCCTCATCAAACCTCGAG-ACTCACA-CCCCTT-AAGA-CA
63 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
6012851 -TTGAGA-TTTA-AGG--TGCTGCC-GTAG-CATTAAAGTGTCTGAAATGGGGA-A-ATTTTTCA
128 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
6012907 AATGGTCACAAACAT-TCTGTACAACTATCTAG-TTTTAGCTAAATTTTTTTGTGCATGCCAACA
193 AATGGTCACAAA-ATCT-TGTAC-ACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * *
6012970 AAAATACAAGGATCACATCTAACAAGTTTGGGGCCAAAGCTCCTGCCGAAAAAATTTAAAAAAAT
254 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
** * *
6013035 CCCGAATTGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTT
319 CCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * * *
6013100 CACGTGAAGGCTTAAAGGACCATTGTTTGAACTTACATGCCATAAAAATGGCAGTGGCACACAGA
384 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
* * *
6013165 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGTGCATCCCATCTCT
449 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * *
6013230 CTGGCCGGCATAGT------GCCCACCCGCCCGCTCGTTTCATCTGTAGGCTTAGGCATACGGAG
514 CTGGCCGACGTAGTGCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* ** * ** * * * *
6013289 TTCATTCCCTGTCTAAGATCAAACCGGGTCGAGGGTTGTGGCAGCAAGATTGGCAGAACATAGAG
579 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAG
* ** * ** *
6013354 GGGGACCCGACCGATCCCCGGCTTATGCATCTCGCCCCTCTGGCCGGCTGAATGCCCGCACACTC
644 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
6013419 GTTTCGTGGGTTGACTTAGGTATACGGAGTTCTTTCCCAGTCTAAGCATATGGAGTTCATTCCCA
709 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
** *
6013484 GTCTAAGATCGGATGGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
774 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * ** *
6013549 GCATTTTTCTTCGTCGGGGCACCA---T-----CA-C-T-GGAGAACCTGACCGGTGGCATTA
839 GTATTTTTCTTCCT-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* * * * * *
6013601 GGGTTGC-AGCGATCGGCGGGCC-GGGGGGTTTGCGTACGTGATGTGCGATGGGTGCTGGAACTT
1 GGGTTCCGA-CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
6013664 GGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
6013729 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGAGACACTTTTTTCAAA
130 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
6013794 TGCTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGCATTTTTTTGTGCATGCCAAAAAAAATA
195 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* *
6013859 CAAGGATCACGTCTACCACA-TTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCCCGA
260 CAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* * * *
6013923 ACCGCAAAAAGTTTCGAAAATCCT-AAAAATTAGAAAAGGAGTCATCTTGCCATGAAACTTCACG
324 ACCGCAAAAAGTTTCAAAAATCGTGAAAAA-TAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
6013987 TGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTTACGCATCAC
388 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC--A--CA-CAG
** * ** ** * * * * * *
6014052 ATCCCTCTGGCCGGAGTAGTGCC--CGCCCGCCCGT-CCGCTCGTTTCG-TCGATTGGCTTAG-G
448 A--AATAT-G-AAGA-T-GTGCCTAAACCC-ACC-TACCAC-CCTATCGATCCA-CGGCTT-GCG
* * ** * *** * * * * ** * *
6014112 CATACGGAGT-TCAT-----TCGTAGT--CTAAGATCGGACCGGACCG-AAGGTT-G-CGG-TAG
502 CATCCCGTCTCTC-TGGCCGACGTAGTGCCCCCG-CCCG-CCCGCCCGCTCGTTTCGTCGGTTGG
* ** * * ** * *
6014165 --TAGG-AT-CGGCAG--CA-T----GT-AAAG-GGGGACCCGGCCGA---TCCCTGGCTTG-TG
564 CTTAGGCATACGG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT-TGTGGC-AGCAG
* * **** * * * * * * * *** *** **
6014213 CATC--CCGC-C-C--CTCTGG-CCGGCTC-AGCACC--C--ACACA-CTCGTTTCGAGGGTTGG
626 GATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* *** * * *** * * *
6014265 CTTAG-GCATACA-GAATTC-ATTC-CCAG-T--C-CAAGCATACGGAGTTCATTCCCAATCTAA
691 CTGAGCGCCCGCACG--CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
6014322 G-AT-C-G-G---A---C-----------C--A---GACCGAGGGTTGCGGCAGCACATGCTGGG
754 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * ** *
6014361 CTTGGGCACGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATTGTCGGAGA
819 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-CTGGGGCACCATCGTCGGAGCATCGTCGGAGA
*
6014426 ACCTGACCGACGGCATTA
883 ACCTGACCGACGGCATTG
* * * * *
6014444 GGGTTCTGGCGATCGAGGGCGTCAGTGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTA
1 GGGTTCCGACGATCG-GGG-GGC--CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
6014509 CTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAACCTTGAGAACTCACACCCCCTTAAA-AGC
62 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
6014573 ATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
127 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
6014638 AAATGGTCACAAACTCTAGTACACTTCGAGTTTTTTGCTGAAATTTTTTGTGCATGCCAACAAAA
192 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * * *
6014703 ATAC-AGCAATCACATCTACCGAGTTTAGGGCCAAAACTCCTTCCGAAAATATTTTAAAAAATCC
257 ATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* **
6014767 CGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
321 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * ** *
6014832 CGTGAAGGATTAAAGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAAAAA
386 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAA
*
6014897 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCT
451 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * *
6014962 AGTCGGCGTAGTGCCTGCCCGCCCGCCCTCCCGCCCGCTCGTTTTGTCGGTGGGCTTAGGCATAC
516 GGCCGACGTAGTGCC--CCCGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * **
6015027 GGAGTTCACTCCCAGTCTAAGATCAGATCGGTCCGAGGG-T-T--------G--CGGCAGCACGT
575 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACAC
* * * * * *
6015080 AGAGGGGGACCCAACCAATCCTCGGCTTGCGCATCCCGCCCCTCTAGCAGGCTGAGCGCCCGCAC
640 AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * ** *
6015145 GCTCGTTTCTTAGGTTGGCTTAGGCATACGGAGTTCATTCGTAGTCTAAGCATATGGAGTTCATT
705 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * *
6015210 CCCAGTCTAAGATTGGACCGAATCGAGAGCTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
770 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* ** *
6015275 TGCCGCATTTTTCTTAACC-GGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACAGCA
835 TGCCGTATTTTTCTT--CCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCA
6015339 TTG
898 TTG
* * *
6015342 GGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGGTGTGCGATGGGTGCTGGTACTT
1 GGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
6015407 GGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
6015472 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGGAATGGAGACACTTTTTTCAAA
130 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
6015537 TGGTCACAAAATCTTGTACACTTCAAGTTTTTGGCTGAATTTTTTTGTGCATGCCAAAAAAAATA
195 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
*
6015602 CAAGGATCACGTCTACCACA-TTTGGGGCCAAAAATCCTGT-CGAAAAAATTTTAAAAAATCCCG
260 CAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCT-TCCGAAAAAATTTTAAAAAATCCCG
* *
6015665 AACCGCAAAAAGTTTCAAAAATCCT-AAAAATTAGAAAACGAGTCATCTTGCCATGAAACTTCAC
323 AACCGCAAAAAGTTTCAAAAATCGTGAAAAA-TAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
*
6015729 GTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTTACGCATCA
387 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC--A--CA-CA
* ** * ** ** * * * * * *
6015794 CATCCCTCTGGCCGGAGTAGTGCC--CGCCCGCCCGT-CCGCTCGTTTCG-TCGATTGGCTTAG-
447 GA--AATAT-G-AAGA-T-GTGCCTAAACCC-ACC-TACCAC-CCTATCGATCCA-CGGCTT-GC
* * ** * *** * * * * ** * *
6015854 GCATACGGAGT-TCAT-----TCGTAGT--CTAAGATCGGACCGGACCG-AAGGTT-G-CGG-TA
501 GCATCCCGTCTCTC-TGGCCGACGTAGTGCCCCCG-CCCG-CCCGCCCGCTCGTTTCGTCGGTTG
* ** * * ** * *
6015907 G--TAGG-AT-CGGCAG--CA-T----GT-AAAG-GGGGACCCGGCCGA---TCCCTGGCTTG-T
563 GCTTAGGCATACGG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGT-TGTGGC-AGCA
* * **** * * * * * * * *** *** **
6015955 GCATC--CCGC-C-C--CTCTGG-CCGGCTC-AGCACC--C--ACACA-CTCGTTTCGAGGGTTG
625 GGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *** * * *** * * *
6016007 GCTTAG-GCATACA-GAATTC-ATTC-CCAG-T--C-CAAGCATACGGAGTTCATTCCCAATCTA
690 GCTGAGCGCCCGCACG--CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
6016064 AG-AT-C-G-G---A---C-----------C--A---GACCGAGGGTTGCGGCAGCACATGCTGG
753 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * ** * ** *
6016103 GCTTGGGCACGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCACCGGAGCATTGTCGGAG
818 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTC-CTGGGGCACCATCGTCGGAGCATCGTCGGAG
*
6016168 AACCTGACCGACGGCATTA
882 AACCTGACCGACGGCATTG
* * * * *
6016187 GGGTTCTGGCGATCGAGGGCGTCAGTGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTA
1 GGGTTCCGACGATCG-GGG-GGC--CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
6016252 CTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTTGAGAACTCACACCCCCTTAAA-AGC
62 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
6016316 ATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTC
127 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
6016381 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTT-TGCATGCCAACAAA
192 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGCATGCCAACAAA
* ** * * *
6016445 AATGCAAGGATCACGTCTACTGAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTGAAAAAATCC
256 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
** *
6016510 CGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
321 CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
6016575 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCA-AGCAGAA
386 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-CAGAA
* * * * *
6016639 ATATGAAGCTGTGCCTAAACTCACCTACCATCCTATCGATCCATGGCTTGCGCATCCTGTCTCTC
450 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * * * *
6016704 TGGCCGGCGTAATGCCCGCCCGCCCGCCCACTCGCTCGTTTCGTTGGTTGGCTTAGGCATATGAA
515 TGGCCGACGTAGTG-CC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
** * * ** *
6016769 GTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGCGGCAGCAGGATCGGCAGCATGCAAA
578 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGA
* * * ** * *
6016834 GGGGGACCCAACCGACCCCCTTCTTGCGCATCTTTCC-CCCCTCTGGTCGGCTGAGCGCCTGCAC
643 GGGGGACCCGATCGATCCCCGGCTTGCGCATC---CCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
6016898 GCTCGTTTCGT-GG--G---T-----T---GA---C--T--CAG-----GCATACGGAGTTCATT
705 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* *
6016937 CCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTGGGGCATGTGCTGG
770 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * * * *
6017002 TGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-CCAAGATAACCTGA-CTAGCGGC
835 TGCCGTATTTTTCTTCCT-GGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGA-CGGC
6017065 ATTG
897 ATTG
* * * *
6017069 GGGTTCCGGCGATCGGGGGGGTCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACCT
1 GGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
6017134 GGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
6017199 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
130 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * *
6017264 TGGTCACAAACTCTTGTACACTTCGAGTTTTTTGCTGAAATTTTTTGTGCATGCCAACAAAAATA
195 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * *
6017329 C-AGCAATCACATCTACCGAGTTTAGGGCCAAAACTCCTTCCGAAAATATTTTAAAAAATCCCGA
260 CAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* ** *
6017393 ACCGTAAAAAGTTTTGAAAATCGTG-AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGT
324 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * * ** *
6017457 GAAGGATTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAAAAATAT
389 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
* ***
6017522 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTCAT
454 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* ** * * **
6017587 TGACGTAGTGCCCGCCCGCCTACCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATATAGAGTTC
519 CGACGTAGTG-CC-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * * * ** *
6017652 ATTCCCAGTCTAAGATCGAATCAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCACGTAGAGTGG
582 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGG
* * * * * *
6017717 GACTCGATCGATCCTCGGCTTGCGCATCCCGCCCTTCTGGCCGGCTGAGTGCCCGTATGCTCGTT
647 GACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
6017782 TCGT-GG--G--TT--G---AC--A----A-----AG-----GCATACGGAGTTCATTCCCAGTC
712 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * *** * *
6017821 TAAGATCAGACCGGACTGAGGGTTACAATAGCACATGCTAGGCTCGGGCATGTGCTAGTGCCGTA
777 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTA
* * * * *
6017886 TTTTTCTTTGCC-AGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGTATTA
842 TTTTTC-TT-CCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* * *
6017946 GCGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGGGTGATGGGTGCTGGTACTT
1 GGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
6018010 GGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATT
65 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
6018075 TGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAA
130 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
6018140 TGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATGCCAACAAAAATA
195 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * * * * *
6018205 CAAGGATCACATCTACCAAGCTTGGGACTAAAAATCATTCTGAAAAACTTTTAAAAAATCCCGAA
260 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
** * ** * * *
6018270 TAGTAAAAAGTTTTGAAAATCATTAAAAATAGAAAACGAGTCGTATTGCCATGAAACTTCACGTG
325 CCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * *
6018335 AAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATGGCATTGGCAAATAGAAAAATG
390 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
* * * * * *
6018400 AATATGTACCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTTTGGCT
455 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
*
6018465 GACGTAGT----------GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAAT
520 GACGTAGTGCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * ** * ** * * *
6018520 CCCAGCCTAAGATCAGACTGGATCGAGCATTGCGGTAGTAGGAAT-GGCAGCACACAGAGGGGGA
585 CCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGG-ATCGGCAGCACACAGAGGGGGA
* * *
6018584 CTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTC
649 CCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * *
6018649 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGGATACGGAGTTCATTCTCGGTCTA
714 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * *
6018714 AGATCGGACCGGACCGAGGGTTGTGCCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATT
779 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATT
* ** ** * * *
6018779 TTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCAAAGAACTTGACCGGCGACATTG
844 TTTCTTCCT-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
* * * *
6018837 GGGTTCCGATGATCGGGGGGGCCGGAGGGGGTATGCTCACATGATCTGCGATGGGTGCTGGTACT
1 GGGTTCCGACGATC-GGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * * *
6018902 TGACTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTGACACCCCCTTAAAGAGCAT
64 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
6018967 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
129 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
6019032 ATGGTCACAAAATCGTGTACACTTGGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAGT
194 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
** *
6019097 ACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAA
259 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
** *
6019162 ACCGTGAAAAGTTTCAAAAAATCGTGAAAAATAGAAAAC-AGGTCGTCTTGCCATGAAACTTCAT
324 ACCGCAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACGA-GTCGTCTTGCCATGAAACTTCAC
* **
6019226 GTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
387 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
* * *
6019291 ATGAAGATGTACCAAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTG
452 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * * *
6019356 GCCGGCATAATGCCCTCCCCCCAGCCCGTCCACTCGTTTCGTCGGTTGGCTGAGGCATACGGAGT
517 GCCGACGTAGTGCCC-CCGCCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
*
6019421 TCGTTCCCAGTCTAAGATC
580 TCATTCCCAGTCTAAGATC
6019440 AGATTGGACC
Statistics
Matches: 14015, Mismatches: 1914, Indels: 1184
0.82 0.11 0.07
Matches are distributed among these distances:
832 66 0.00
833 1 0.00
835 3 0.00
836 48 0.00
837 22 0.00
838 8 0.00
839 2 0.00
840 6 0.00
841 11 0.00
842 8 0.00
843 38 0.00
844 11 0.00
845 121 0.01
846 112 0.01
847 577 0.04
848 207 0.01
849 5 0.00
850 7 0.00
851 23 0.00
852 50 0.00
853 264 0.02
854 53 0.00
855 13 0.00
856 4 0.00
857 10 0.00
858 35 0.00
859 17 0.00
860 8 0.00
861 21 0.00
862 9 0.00
863 28 0.00
864 38 0.00
865 176 0.01
866 25 0.00
867 47 0.00
868 27 0.00
869 31 0.00
870 39 0.00
871 160 0.01
872 51 0.00
873 14 0.00
874 10 0.00
875 12 0.00
876 318 0.02
877 376 0.03
878 140 0.01
879 424 0.03
880 235 0.02
881 54 0.00
882 452 0.03
883 489 0.03
884 219 0.02
885 27 0.00
886 10 0.00
887 100 0.01
888 117 0.01
889 195 0.01
890 616 0.04
891 912 0.07
892 187 0.01
893 497 0.04
894 936 0.07
895 1011 0.07
896 406 0.03
897 512 0.04
898 623 0.04
899 225 0.02
900 207 0.01
901 93 0.01
902 450 0.03
903 728 0.05
904 100 0.01
905 346 0.02
906 551 0.04
907 39 0.00
908 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
ACGTAGTGCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAGGGGGACC
CGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTT
TCTTCCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTG
Found at i:6009936 original size:26 final size:26
Alignment explanation
Indices: 6009894--6009945 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
6009884 GTTGACTTAG
* *
6009894 GCATACGATGTTTATTCGCAGTCTAA
1 GCATACGATGTTCATTCCCAGTCTAA
*
6009920 GCATACGGA-GTTCATTCCCTGTCTAA
1 GCATAC-GATGTTCATTCCCAGTCTAA
6009946 TATCAGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33
Consensus pattern (26 bp):
GCATACGATGTTCATTCCCAGTCTAA
Found at i:6011741 original size:26 final size:26
Alignment explanation
Indices: 6011689--6011741 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6011679 GTTGACTTAG
*
6011689 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
6011715 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
6011741 G
1 G
6011742 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:6015204 original size:26 final size:26
Alignment explanation
Indices: 6015168--6015220 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6015158 GTTGGCTTAG
**
6015168 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6015194 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6015220 G
1 G
6015221 ATTGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6018701 original size:26 final size:26
Alignment explanation
Indices: 6018665--6018715 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
6018655 TGACTTAGGC
6018665 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACGGAGTTCATTCCCAGTCTAAGG
* *
6018691 ATACGGAGTTCATTCTCGGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
6018716 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:6021567 original size:877 final size:870
Alignment explanation
Indices: 6019392--6021958 Score: 3500
Period size: 877 Copynumber: 2.9 Consensus size: 870
6019382 CGTCCACTCG
* * * ** * *** * *
6019392 TTTCGTCGGTTGGCTGAGGCATACGGAGTTCGTTCCCAGTCTAAGATCAGATTGGACCTAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACATAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT
* * * *
6019457 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGAACCATTG
66 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCG
* ** *
6019522 TCGGAGCAT-AGCCGGAGAACCTGACCGGCGGCATTAGCGTTCCGGTGATCGAGTGGGCCGGGGG
131 TCGGAGCATCA-CCGGAGAACCTGACCGGCGGCATTGGCGTTCCGACGATCGAGGGGGCCGGGGG
*
6019586 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCAT
195 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * * *
6019651 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGC
260 CAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTGAGGTTTTACAGGTTTGGTGCCAGTAGC
* *
6019716 CATTAAAGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACCCA-TCGAGT
325 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA-CAATTCGAGT
* * * *
6019780 TTTTAGCTGAATTTTTTTGTGAATGCCAACAAAAATACAAGGATCACATCTACTATGTTTGGTGC
389 TTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGTGC
* * * * *
6019845 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCCAACCGTAAAAAGTTTTAAAAATCTTGAGAA
453 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCCAACCGCAAAAAGTTTCAAAAATCATGA-AA
* *
6019910 ATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCCTAAGGGACCATGGTATGAATTT
517 ATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* ** ****
6019975 ACAAGCCAAAAAAATATCATTGGCTTGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
582 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
** * * * * *
6020040 TATCGATCCACTGCTTGGGCATCTCGCCTCTCTGGTCGACGTCGTGCCCG-C-CTG---CCTGCT
647 TATCGATCCAC-GCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCTGCCACCCGCT
* * ** *
6020100 CGTTTCGTCGGTTGGCTTAGGCAGATGGAGTTCATTCACAGTCTAAGATCAGATTAGACCAAGGG
711 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC-CAGTCTAAGATCAGATCGGACCGAGGG
* * *
6020165 TTGTGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCCCTGACTTGCGCATCTCGC
775 TTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGACTTGCGCATCTCGC
* *
6020230 CACTTTGGTCGGTTGAGCACCCGCACGATCA
840 CACTTTAGTCGGCTGAGCACCCGCACGATCA
*
6020261 TTTCGTGGGTTGACTTAGGCATACATAGGTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAA
1 TTTCGTGGGTTGACTTAGGCATACATAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C--
* * *
6020326 TCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGTCG
53 -C--AGAT----------CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* ** * *
6020391 CATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGG
105 CATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGCG
* * *
6020456 TTCTGACGATCGAGGTGGTCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
170 TTCCGACGATCGAGG-GGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
6020521 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTG
233 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTG
* * * *
6020586 AGGTTTTACAGGTTTGGTGCTAGCAGCCCTTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATG
298 AGGTTTTACAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
6020651 GTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAAAAAATACAA
363 GTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAA
* *
6020716 GGATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTCCGAAAAAGTTTTAAAAAAATCCCCAACT
428 GGATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCCAACC
* *
6020781 GCAAAAAGTTTCAAAAATCATGAAAAGTAGAAAACGAGTCGTCTCGCCACGAAACTTCACGCGAA
492 GCAAAAAGTTTCAAAAATCATGAAAA-TAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAA
* *
6020846 GGCTTAAGGGACCATTGTTTGAATTTACAAGCTATAAAAATGGCATTGGCACACAGAAATATGAA
556 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
*
6020911 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATCCCGTCTCTCTGGCCGG
621 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACG-CTTACGCATCCCGTCTCTCTGGCCGA
* * *
6020976 CGTAGTGCCCGCCCGCTTGCCCACCCGCTCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATT
685 CGTAGTGCCCG-CCGC-TG-CCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* *
6021041 CCTAGTCTAAGATCAGATCGGACCGAGGGTTATGGCAGCAGGATCGGCAGCACGTAGAGGGGGAC
747 CC-AGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
* * * * *
6021106 CCGGCCAATCCCCGGCTTGCGCATCTCGCC-CTTCTAGTCGGCTGAGCACCTGCACGCTCG
811 CCGACCAATCCCCGACTTGCGCATCTCGCCACTT-TAGTCGGCTGAGCACCCGCACGATCA
* *
6021166 TTTTGTGGGTTGACTTAGGTATACA-AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT
1 TTTCGTGGGTTGACTTAGGCATACATAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT
* ** * * *
6021230 ACGGTTGCACATGCTGGGCTCGGGCCTGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCG
66 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCG
* * *
6021295 TCGGACCATCACCGGAGAACCTGACCGGCGGCATTGGTGTTCCGACGATCGGGGGGGCCGTGGGG
131 TCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGCGTTCCGACGATCGAGGGGGCCG-GGGG
6021360 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
195 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
6021425 CAAACCTTGAGAACTCACACCCCCTAAAAGAGCATTTGAGGTTTTACAGGTTTGGTGCCAGTAGC
260 CAAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTGAGGTTTTACAGGTTTGGTGCCAGTAGC
6021490 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTT
325 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTT
* *
6021555 TTTAGCTGAATTTTTTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
390 TTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCC
6021620 AAAACTCC-TCCTGAAAAAATTTTAAAAAA-CCCCAAACCGCAAAAAGTTTCAAAAATCATGAAA
454 AAAACTCCTTCC-GAAAAAATTTTAAAAAATCCCC-AACCGCAAAAAGTTTCAAAAATCATG-AA
6021683 AATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
516 AATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
*
6021748 TACAAGCCATGAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
581 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * *
6021813 CTATCGATCCACGGCTTATGCATCCCGTCTCTCTGGCCGACGTATTGCCTGGCCGCCTGGCCACC
646 CTATCGATCCAC-GCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCC-CGCCG-CT-GCCACC
*
6021878 CGCTTGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
707 CGC----TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGATCGG
*
6021943 ACTGAGGGTTGTGGCA
767 ACCGAGGGTTGTGGCA
6021959 ACACATGTTG
Statistics
Matches: 1496, Mismatches: 145, Indels: 102
0.86 0.08 0.06
Matches are distributed among these distances:
869 38 0.03
870 2 0.00
871 1 0.00
873 2 0.00
876 6 0.00
877 432 0.29
878 173 0.12
881 65 0.04
882 2 0.00
885 2 0.00
888 4 0.00
890 1 0.00
893 1 0.00
895 108 0.07
896 62 0.04
897 403 0.27
899 1 0.00
900 3 0.00
901 2 0.00
902 1 0.00
903 2 0.00
904 22 0.01
905 163 0.11
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (870 bp):
TTTCGTGGGTTGACTTAGGCATACATAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT
GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCG
TCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGCGTTCCGACGATCGAGGGGGCCGGGGGG
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTAAAAGAGCATTTGAGGTTTTACAGGTTTGGTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAA
AACTCCTTCCGAAAAAATTTTAAAAAATCCCCAACCGCAAAAAGTTTCAAAAATCATGAAAATAG
AAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCTGCCACCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGG
CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGACTTGCGCATCTCGCCACTTT
AGTCGGCTGAGCACCCGCACGATCA
Found at i:6023449 original size:26 final size:26
Alignment explanation
Indices: 6023413--6023462 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
6023403 GACTTAGGCG
6023413 TACGCAGTTCATTCCCAATCTAAGCA
1 TACGCAGTTCATTCCCAATCTAAGCA
* *
6023439 TACGGAGTTCATTCCCAGTCTAAG
1 TACGCAGTTCATTCCCAATCTAAG
6023463 ATCGGATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (26 bp):
TACGCAGTTCATTCCCAATCTAAGCA
Found at i:6024626 original size:866 final size:857
Alignment explanation
Indices: 6022549--6025208 Score: 2865
Period size: 865 Copynumber: 3.1 Consensus size: 857
6022539 CCTGCCCGTC
* * * * * *
6022549 CGCCCGCCCGTTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
* * * * * *
6022614 CC-AGACCGAGGGTTGTGGCAACACATGTTGGGCTCAGGCATGTGCTGGTGCCACCTTTTTCTTC
66 CCGAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * *
6022678 GTCAGGGCACCATCTCCGGAGCATCGTCGGAGAACGTGACCGGCGGAATTGGGGTTCCGGCGATC
131 GTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGAATTGGGGTTCCGGCGATC
* *
6022743 GGGGGGGC------TGTACGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCC
196 GGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
6022802 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
261 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * ** *
6022867 TGCTGCCAGTAGCCATTAAAGTGTTTGAAATTAGGAAACTTTTTTGAAATGGTCACAAAATCTTG
326 TGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTG
* *
6022932 TACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-AAAAAGTACAAGGATC-CATTCTT
391 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCACAAAAA-TACAAGGATCACA-TCTA
* * *
6022995 CCTAAGTTTGGAG-CAAGAACTCCTT-TCG---AAA-TTAAAAAAATCCCG-ACCGCAAAAGTTT
454 CC-AAGTTTGGAGCCAA-AAATCCTTCT-GAAAAAATTTAAAAAAATCCCGAACCGAAAAATTTT
***
6023053 -GGGAATCGTGAAAAATA-AAAACGAGTCGTCTTTGCCATGAAACTTCACGTGAAGGCTTAA-GG
516 CAAAAATCGTGAAAAATAGAAAACGAGTCGTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * * *
6023115 TCCATTGTTTG-ATTTACATGCATAAAAAATGGCA-AGGCACGC-AAAA-ATGAAGATGTGCCTA
580 ACCATTGTATGAATTTACAAGCAT-AAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTA
* * *
6023176 AA-CCACCTACCACACCTATCGGATCCATGGCTGTGCG-AT-CCGTC-CT-TAGGCCGGCGTAGT
644 AACCCACCTACCAC-CCTATC-GATCCACGGCT-TGCGCATCCCGTCTCTCTA-GACGGCGTAGC
* *
6023236 TGCCCGCATCACACCTCGTATATTTCGT-GG-TTGCTTAGGCA-AG-G-----T-CC-AT-T--G
705 TGCCCGC-TC-C-GCTCG----TTTCGTCGGTTTGCTTATGCATAGAGTTCATTCCCAATCTAAG
* * * * * * ** * * * * ** * *
6023287 TTTAG-CCA-ACAAAGGTT---TTGGAAGGTCAGCAGCATTCAG-CGTGAATCC-ATGTTGAACT
763 ATTAGACCAGACTAAGGTTGAGTAGCAAGATCGGCAGCACACAGAAGGGGACCCGA--CCGATCC
* *
6023345 CCGTTTGCGCATCTCCCGCCTCTGGCCGGTTGAG
826 CCGCTTGCGCATC-CCC-CCTCTGGCCGGCTGAG
* * * *
6023379 CG-CCGCATGCTCGTTTCGTGGGTTGACTTAGGCGTACGCAGTTCATTCCCAATCTAAGCATACG
1 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG-AT-C-
*
6023443 GAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
63 -AG---A---CC-G----AGA-C----T-----GAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
* * * * * * *
6023508 ATGTGCTGGTGTCGCATTTTCCTTCATCGGGGCACCATCGCTGGAGCATCACCGCAGAACCTGAC
106 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGAC
* * * * **
6023573 CGGTGGAATTGGGGTTCCAGCGATC-GGGGGTCGGGGGGTGTGTGCACATGATGTAAGATGGGTG
171 CGGCGGAATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
6023637 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTA
236 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
6023702 AAGAGCATTTGAGATTTTACAGGTTTGCTGGGAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
301 AAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
6023767 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
366 TTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
6023832 GCGAAAATACAAGGATCACGTCTAACAAGTTTGGAGCCAAAAATCCTTCTGAAAAAATTTTAAAA
431 -CAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAAATCCTTCTGAAAAAATTTAAAAA
* * *
6023897 AATCCCGAACGGAAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTACCATGAAA
495 AATCCCGAACCG-AAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
6023962 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
559 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CATAAAAATGGCATTGGCATGC
* *
6024027 AAAAATATGAAGTTGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
623 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
6024092 TCTCTAAACGACGTAG-TGCCCG-TCCGCTCGTTTCGTCGGTTTGCTTATGCATATGGAGTTCAT
688 TCTCTAGACGGCGTAGCTGCCCGCTCCGCTCGTTTCGTCGGTTTGCTTATGCATA--GAGTTCAT
* *
6024155 TCCCAATCTAAGATCAGACCAGACTGAAGGTTGAGGTAGCAAGATCGGCAGCACACAGAGGGGGA
751 TCCCAATCTAAGATTAGACCAGACT-AAGGTTGA-GTAGCAAGATCGGCAGCACACAGAAGGGGA
*
6024220 CCCGACCGATCCCCGACTTGCGCATCCCGCCCATCTGGCCGACTGAG
814 CCCGACCGATCCCCG-CTTGCGCATCCC-CCC-TCTGGCCGGCTGAG
*
6024267 CGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
1 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
***
6024332 CCGA-ACTGAGGGTTGCAATAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC
66 CCGAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * * *
6024396 GTCGGGGCATCATCACCGGAGCATCATCGGAGAACCTGATCGACGGCATTAGGGTTCCGGCGATC
131 GTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGAATTGGGGTTCCGGCGATC
* * * *
6024461 GGGGGGGCCGGGGGGGTGCGCGCAGATGTTGTGCGATGCGTGCTGGTACTTGGCCCTTATATTGG
196 GGGGGGG-C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
6024526 CCCCCTATCCATCATTAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
259 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * *
6024591 TTTCCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTCTTTTGTAATGGTCACAAAATCT
324 TTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCT
6024656 TGTACACTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCT
389 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-ACAAAAATACAAGGATCACATCT
* * * ** * * *
6024720 GCCAAATTTGGGGCCAAAAATCCTTCCAAAAAAATTGAAAAAAATCTCGAACCGTAAAATGTTTC
453 ACCAAGTTTGGAGCCAAAAATCCTTCTGAAAAAATTTAAAAAAATCCCGAACCGAAAAAT-TTTC
* * * * *
6024785 AAAAATCATGACAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAATGCTTGAGGGAC
517 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
** * *
6024850 CATTGTATGAATTTACAAGTCATAAAAATGGCATTCACATGCAGAAATATGAAGATGTACCTAAA
582 CATTGTATGAATTTACAAG-CATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAA
* * * * *
6024915 CCCACATACCATCCTATCGATGCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCTGC
646 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGACGGCGTA--G-CTG-
* * * * *
6024980 CCCGCCTGCCCGCACATTTCGTCGGTTGGCTTATGCATACAGAATTCATTCCCAATCTAAGATTG
707 CCCG-CT--CCGCTCGTTTCGTCGGTTTGCTTATGCAT--AGAGTTCATTCCCAATCTAAGATTA
* * * * * * *
6025045 GACCAGATCTAGGGTTGCAGCAGTAGGATCGGTAGCACGCAGAAGGGGACTCGACCGATCCCCGG
767 GACCAGA-CTAAGGTTG-AGTAGCAAGATCGGCAGCACACAGAAGGGGACCCGACCGATCCCC-G
*
6025110 CTTGCGCATCCTACCCCTCTGGCCGGCTGAA
829 CTTGCGCATCC--CCCCTCTGGCCGGCTGAG
** * *
6025141 CGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAATCTAAGATTAGA
1 CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
6025206 CCG
66 CCG
6025209 GACCGATGGT
Statistics
Matches: 1535, Mismatches: 189, Indels: 168
0.81 0.10 0.09
Matches are distributed among these distances:
829 47 0.03
830 4 0.00
831 1 0.00
833 1 0.00
836 1 0.00
839 2 0.00
845 3 0.00
846 1 0.00
854 6 0.00
855 104 0.07
860 223 0.15
861 18 0.01
862 5 0.00
863 107 0.07
864 29 0.02
865 267 0.17
866 199 0.13
867 44 0.03
868 28 0.02
869 22 0.01
870 20 0.01
871 16 0.01
872 34 0.02
873 21 0.01
874 186 0.12
875 8 0.01
876 4 0.00
877 2 0.00
878 2 0.00
879 2 0.00
880 4 0.00
881 3 0.00
882 3 0.00
883 6 0.00
885 2 0.00
887 27 0.02
888 31 0.02
889 52 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (857 bp):
CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA
CCGAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC
GTCGGGGCACCATCACCGGAGCATCATCGGAGAACCTGACCGGCGGAATTGGGGTTCCGGCGATC
GGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCACAAAAATACAAGGATCACATCTACC
AAGTTTGGAGCCAAAAATCCTTCTGAAAAAATTTAAAAAAATCCCGAACCGAAAAATTTTCAAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGACGGCGTAGCTGCCCGCTCCG
CTCGTTTCGTCGGTTTGCTTATGCATAGAGTTCATTCCCAATCTAAGATTAGACCAGACTAAGGT
TGAGTAGCAAGATCGGCAGCACACAGAAGGGGACCCGACCGATCCCCGCTTGCGCATCCCCCCTC
TGGCCGGCTGAG
Found at i:6026219 original size:26 final size:26
Alignment explanation
Indices: 6026190--6026242 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6026180 GTTGACTTAG
6026190 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6026216 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6026242 G
1 G
6026243 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6027142 original size:26 final size:26
Alignment explanation
Indices: 6027092--6027144 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
6027082 GTTGACTTAG
* *
6027092 GCATACAGAGTTGATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAATCTAA
6027118 GCATACAGAGTTCATTTCC-AATCTAA
1 GCATACAGAGTTCA-TTCCTAATCTAA
6027144 G
1 G
6027145 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAATCTAA
Found at i:6027515 original size:901 final size:900
Alignment explanation
Indices: 6025316--6027784 Score: 3518
Period size: 901 Copynumber: 2.7 Consensus size: 900
6025306 GTTGACTTAG
* * *
6025316 GCATACGGAGTTCATTGCCAGTCTAAGATTGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
6025381 CTCGGGCATGTGTTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-CCGGAGA
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACC-TAGA
* *
6025445 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCGGAGGGGGTGTGCGCACATGATGTG
* * *
6025509 CGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACCTCGAGAACTCA
195 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCTAGAACTCA
* * *
6025574 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGTCAGTAACCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
6025639 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
6025704 GTGCATGCCAAAAAAAATACAACGATCACGTCTACCAAGATTGGGGCC-AAAATGCCTTCCGAAA
389 GTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGACCAAAAAT-CCTTCTGAAA
* ** *
6025768 AAATTTTAAAAAATCCGGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
6025833 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
6025898 CATTGGCAC-ACAGAAATTTGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGGCAT
583 CATTGGCACGA-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * ** * * * *
6025962 GCGCATCCCATCTC-TCAGCTAGCGTAGTGCCCGCTCGCCCGCCTGCCCACTCATTTCGTCGGTT
647 GTGCATCCCGTCTCTTTGGCCAGCGTAGTG-CCGCTCACCCGCCCGCCCACTCATTTCGTCAGTT
* * * ***
6026026 GGCTTAGGCATATGGTGTTCATTCCCAGTCCAAGATCGGACTGGACCGAGGGCTGTGGCACCAAG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGATCGGACAGGACCGAGGGCTAAAGCACCAAG
* *
6026091 ATCGACAGCACACATAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCCCCTCTGGCTGGCTG
776 ATCGACAGCACACAGAGGGGGACCCAATCGATCCCCGACTTGCGCATCCCCCCTCTGGCTGGCTG
* * *
6026156 AGCGCCCGCACGCTCGTTTCACGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 AGCACCCACACGCTCGTTTCACGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* **
6026216 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGTGCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
6026281 CTCAGGCATGTGCTAGAGCCATATTTTTCTTC-ACTGGGGCACCATCGTCGGAGCA--ATGCTGG
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCA-CCT--
*
6026343 AGAACCTGACCGGCT-GCATTGGGGTTCCTG-TGATCGGGGGGGCCGGGAGGGGGTGTGCGCACA
127 AGAACCTGACCGG-TGGCATTGGGGTTCC-GACGATCGGGGGGG-C-GGAGGGGGTGTGCGCACA
* *
6026406 TGATGTGTGATGGGTGCTGGTACTTGGCCCCTATA-TGGTTCCCCTATCCCTCATCAAACCT-TG
188 TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCT-
* *
6026469 AGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGT
251 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
6026534 GTTTGAAATGGGGGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-TTTTGTAGCTG
316 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT-TAGCTG
* * *
6026598 AATTTTTTTATGCATGCCAACAAAAATACAGGGATCAAGTCTACCAAGTTTAGGACCAAAAATCC
380 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGACCAAAAATCC
*
6026663 TTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAAC
445 TTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAAC
* *
6026728 AAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
510 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
6026793 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
575 AAAAATGGCATTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
6026858 ACGGCTTGTGCATCCCGTCTCTTTGGCCGGCGTAGTG-C-CT-ACCCGCCCGCCCGCTCGTTTTG
640 ACGGCTTGTGCATCCCGTCTCTTTGGCCAGCGTAGTGCCGCTCACCCGCCCGCCCACTCATTTCG
* * * * * *
6026920 TCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAATATCGGACAGGATCGAGGGTTAAAGT
705 TCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGATCGGACAGGACCGAGGGCTAAAGC
* * * * ** * **
6026985 AGCAGGATGGGCAGCATGCAGAGGGGGACCCAATCTATCCCCGGTTTGCGCATCCCGCCCCTCTG
770 ACCAAGATCGACAGCACACAGAGGGGGACCCAATCGATCCCCGACTTGCGCAT-CC-CCCCTCTG
* ** * *
6027050 GCTGGCTGAGCACCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTGATTCCTAGTC
833 GCTGGCTGAGCACCCACACGCTCGTTTCACGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
6027115 TAA
898 TAA
* * * * * * *
6027118 GCATACAGAGTTCATTTCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
6027183 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATCACCTTGAA
66 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCTAGAA
* *
6027248 CCTGACCGGTGGCATTGGGGTTTCGACGATCGGGGGGGTCGGATGGGGGTGTACGCACATGATGT
131 CCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGG-CGGA-GGGGGTGTGCGCACATGATGT
* *
6027313 GTAATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCA
194 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCA
* *
6027378 CACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
6027443 TGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTAGAGTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
6027508 GTGCATGCCAACAAAAATACAAGGATCACA-TCTACAAAGTTTGGGACCAAAAATCCATT-TGAA
389 GTGCATGCCAACAAAAATACAAGGATCA-AGTCTACCAAGTTTGGGACCAAAAATCC-TTCTGAA
* * *
6027571 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAATTGTGAAAAATAGAAAACGAGTTGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
6027636 CTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
6027700 GCATTGGCATGAAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCAATCCACGGCTT
582 GCATTGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
6027765 GTGCATCTCGTCTCTCTGGC
647 GTGCATCCCGTCTCTTTGGC
6027785 TGGATGAGCG
Statistics
Matches: 1396, Mismatches: 144, Indels: 58
0.87 0.09 0.04
Matches are distributed among these distances:
899 1 0.00
900 309 0.22
901 438 0.31
902 189 0.14
903 380 0.27
904 79 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCTAGAA
CCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCGGAGGGGGTGTGCGCACATGATGTGT
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGACCAAAAATCCTTCTGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGC
ATCCCGTCTCTTTGGCCAGCGTAGTGCCGCTCACCCGCCCGCCCACTCATTTCGTCAGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCCAAGATCGGACAGGACCGAGGGCTAAAGCACCAAGATCGA
CAGCACACAGAGGGGGACCCAATCGATCCCCGACTTGCGCATCCCCCCTCTGGCTGGCTGAGCAC
CCACACGCTCGTTTCACGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:6027855 original size:26 final size:26
Alignment explanation
Indices: 6027825--6027877 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6027815 GTTGACTTAG
6027825 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
6027851 GCATACGGAGTTTATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6027877 G
1 G
6027878 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6028723 original size:26 final size:26
Alignment explanation
Indices: 6028672--6028724 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6028662 GTTGACTTAG
**
6028672 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAACCTAA
*
6028698 GCATACGGAGTTCATTCCCAACCTAA
1 GCATACGAAGTTCATTCCCAACCTAA
6028724 G
1 G
6028725 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAACCTAA
Found at i:6029200 original size:849 final size:847
Alignment explanation
Indices: 6027779--6029448 Score: 2592
Period size: 849 Copynumber: 2.0 Consensus size: 847
6027769 ATCTCGTCTC
* * *
6027779 TCTGGCTGGATGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
1 TCTGGCCGGATGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCC
* * ** * * *
6027844 AGTCTAAGCATACGGAGTTTATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGGTAGCACA
66 AGTCTAAGCATACGGAGTTCATTCCCAACCTAAGATCAGACCGGACCGAGGGCTGCGGCAGCACA
* * *
6027909 TGCTGGGCTCGAGCATGTGCTGGTACCGCATTTTTCATTGTCGGGGCACCATCGTCGGAGCATCA
131 TGCTGGGCTCGAGCATGTGCTGGTACCGCATTTTTCATTGCCGGGGCACCATCATCAGAGCATCA
* * * *
6027974 CCGGAGAACTTGACCAACAACATTGGGGTTCCGGCGATCAGGGGGGTCGGGGGGTGTGCGCACAT
196 CCGGAGAACCTGACCAACAACATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGGTGCGCACAT
* *
6028039 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGA
261 GATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
6028104 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTAGAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
326 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGCAGCCATTAAAGTGTC
* * *
6028169 TAAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATT
391 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATT
* *
6028234 TTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACAAAGTTTAGGGCCAAAACTCCTTCC
456 TTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACAAAGTTTAGGGCCAAAAATCCTTCC
* * * **
6028299 GAAAGAATTTTAAAAAATCCCGAACCGTAAAAAGCTTCGAAAATCATGAAAAATGGAAAACGAGT
521 GAAAAAATTTTAAAAAATCCCGAAACGTAAAAAGCTTCAAAAATCATGAAAAATAAAAAACGAGT
6028364 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAA
586 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAA
* * *
6028429 ATGGCATTGGCATTTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGG
651 ATGGCATTGGCACTAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGG
* * *
6028494 CTTGCGCATCCCG-TCTCTGGCCGATGTAGTGCCCGCAC-GCCCACCCACTCGTTCATTTCGTCC
716 CCTGCGCATCCCGCTCTCTGGCCGACGTAGTGCCCGC-CTGCCCACCCAC-CGCTCATTTCGTCC
* *
6028557 GTCGGCTTAGGCATATGAAGTTCATTTCCAATCTAAGATCAGCCCAGACTGAGGGTTGCATCTTG
779 GTCGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGCCCAGACTGAGGGTTGCATCTTG
6028622 CCAT
844 CCAT
*
6028626 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCC
1 TCTGGCCGGATGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCC
* *
6028691 AGTCTAAGCATACGGAGTTCATTCCCAACCTAAGATCGGACCGGACCGAGGGCTGTGGCAGCACA
66 AGTCTAAGCATACGGAGTTCATTCCCAACCTAAGATCAGACCGGACCGAGGGCTGCGGCAGCACA
* * * *
6028756 TGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTC-TTCGCCGGGGCACCATTATCAGAGCATC
131 TGCTGGGCTCGAGCATGTGCTGGTACCGCATTTTTCATT-GCCGGGGCACCATCATCAGAGCATC
** * ** *
6028820 GTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGCGGGGGGTGCGCA
195 ACCGGAGAACCTGACCAACAACATTGGGGTTCCGACGATCAGGGGGGCCG-G-GGGGGGTGCGCA
6028885 CATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
258 CATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
6028950 AGAACTCACACCCCCTTAACGAGCATTTGAGATTTTACAGGTTTCCTGCCAGCAGCCATTAAAGT
323 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGCAGCCATTAAAGT
6029015 GTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAA
388 GTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAA
* * *
6029080 ATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAAATCCT
453 ATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACAAAGTTTAGGGCCAAAAATCCT
* **
6029145 TCCGAAAAAATTTTAAAAAATCCCGAAAC-TCAAAAAGTTTCAAAAATTGTGAAAAATAAAAAAC
518 TCCGAAAAAATTTTAAAAAATCCCGAAACGT-AAAAAGCTTCAAAAATCATGAAAAATAAAAAAC
* * *
6029209 GAGTTGTCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
582 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAC
*
6029274 AAAAATGGCATTGGCACTAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
647 AAAAATGGCATTGGCACTAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCC
* * * *
6029339 ACGGCCTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCTGCCCGCCCGCCGCTCATTTCG
712 ACGGCCTGCGCATCCCG-CTCTCTGGCCGACGTAGTGCCCGCCTGCCCACCCACCGCTCATTTCG
* * * * *
6029404 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTACGATCAG
776 TCCGTCGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAG
6029449 ACTGAACCGA
Statistics
Matches: 743, Mismatches: 73, Indels: 11
0.90 0.09 0.01
Matches are distributed among these distances:
846 2 0.00
847 212 0.29
848 2 0.00
849 450 0.61
850 49 0.07
851 28 0.04
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (847 bp):
TCTGGCCGGATGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCC
AGTCTAAGCATACGGAGTTCATTCCCAACCTAAGATCAGACCGGACCGAGGGCTGCGGCAGCACA
TGCTGGGCTCGAGCATGTGCTGGTACCGCATTTTTCATTGCCGGGGCACCATCATCAGAGCATCA
CCGGAGAACCTGACCAACAACATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGGGTGCGCACAT
GATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGCAGCCATTAAAGTGTC
TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATT
TTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACAAAGTTTAGGGCCAAAAATCCTTCC
GAAAAAATTTTAAAAAATCCCGAAACGTAAAAAGCTTCAAAAATCATGAAAAATAAAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAA
ATGGCATTGGCACTAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGG
CCTGCGCATCCCGCTCTCTGGCCGACGTAGTGCCCGCCTGCCCACCCACCGCTCATTTCGTCCGT
CGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGCCCAGACTGAGGGTTGCATCTTGCC
AT
Found at i:6029904 original size:26 final size:26
Alignment explanation
Indices: 6029868--6029920 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6029858 GTTGACTTAG
6029868 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6029894 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6029920 G
1 G
6029921 ATTGGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6030794 original size:26 final size:26
Alignment explanation
Indices: 6030764--6030814 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
6030754 TTGACTTAGG
6030764 CATACAGAGTTCATTCCCAGTCTAAC
1 CATACAGAGTTCATTCCCAGTCTAAC
6030790 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
6030815 GATCAGGCCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAC
Found at i:6031638 original size:26 final size:26
Alignment explanation
Indices: 6031602--6031652 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
6031592 TGACTTAGGT
* * *
6031602 ATACGGAGTTCATTCGCAGTCTAAGC
1 ATACAGAGTTCATTCACAATCTAAGC
6031628 ATACAGAGTTCATTCACAATCTAAG
1 ATACAGAGTTCATTCACAATCTAAG
6031653 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCACAATCTAAGC
Found at i:6031923 original size:835 final size:828
Alignment explanation
Indices: 6030308--6031978 Score: 2376
Period size: 835 Copynumber: 2.0 Consensus size: 828
6030298 GATACAATGG
* ** * *
6030308 TCACGTTTACCAAGTTTGGGGTGAAAAATCCTTCTGAAATAATTTTAAAAAATCCAGAACCGTAA
1 TCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAA
* * *
6030373 AAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
66 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGAGAAGGCT
* *
6030438 TAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCACAAATATGAAGATG
131 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCACAAATATGAAGATG
* * *
6030503 TGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
196 TACCT-AA--CA-C-ACCA-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGAAGTA
* * * *
6030568 GTGTTTGCCCGCCTGCTCGTTTCGTCGGTTGGCTTTGGCATATGGAGTTCATTCCTAGTCTAAGA
255 GTGTTTGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
**** * * * ** * **
6030633 ACAGATTGGACCGAGGGTTGTGACAGGAAGATCGGTAGCATGCAGAGGGTGACCTAGTTGATCCC
320 ACAGACCAAACCGAGGGTTGCGACAGCAAGATCGGTACCACACAGAGGGTGACCCAGCCGATCCC
* * **
6030698 CGGCTTGTGCATCCCGCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAG
385 CGACTTGCGCATCCCGCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * *
6030763 GCATACAGAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCCCAGTCTAAGATCAGGCCGGAT
450 GCATACAGAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCACAATCTAAGATCAGACCGGAC
* ** * * *
6030828 TGAGGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
515 CGAGGGTTCCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGAGG
*
6030893 CACCATCACTGGAGCATCGCCAGAGAACCTGACTGGCAGCATTAGGGTTCCAGCGATCGGGGGCA
580 CACCATCACCGGAGCATCGCCAGAGAACCTGACTGGCAGCATTAGGGTTCCAGCGATCGGGGGCA
*
6030958 CCGGGGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
645 CCGGGGGGGTGTACGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
6031023 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
710 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
6031088 CCAGTAGCCATTAAAATGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAAA
775 CCAGTAGCCATTAAAATGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAAA
* *
6031142 TCACGTCTACCAAGTTTGGGGCCAAAACT-CTGTCCGAAAAAATTTTAAAATATCTCA-AACCGT
1 TCACGTCTACCAAGTTTGGGGCCAAAAATCCT-TCCGAAAAAATTTTAAAAAATC-CAGAACCGT
*
6031205 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGAAGAAG
64 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG-AGAAG
* *
6031270 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
128 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCACAAATATGAAG
6031335 ATGTACCT-A-A-A-C-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGCATAGTA
193 ATGTACCTAACACACCACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCC-G-A-AGTA
6031395 CCCGTCCGTCTTCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCT
255 ---GT--GT-TT---GCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCT
* * * *
6031460 AGTGTAAGATCGGACCAAACCGAGGGTTGCGACAGCAGGATCGGTACCACACAGAAGGG-GACCC
311 AGTCTAAGAACAGACCAAACCGAGGGTTGCGACAGCAAGATCGGTACCACACAG-AGGGTGACCC
* * *
6031524 AGCCGATGCCCGACTTGCGCATCCCGCTCCTCTGGCCGGCTGAGCACCTGCACGCTCGTTTCGTG
375 AGCCGATCCCCGACTTGCGCATCCCGC-CCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATG
* * * *
6031589 GGTTGACTTAGGTATACGGAGTTCATTCGCAGTCTAAGCATACAGAGTTCATTCACAATCTAAGA
439 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCACAATCTAAGA
*
6031654 TCAGACCGGACCGAGGGTTCCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTT
504 TCAGACCGGACCGAGGGTTCCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTT
* * * * * *
6031719 CTTCACCGAGGCACCATCGCCGGAGCTTCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCC-GA
569 CTTCACCGAGGCACCATCACCGGAGCATCGCCAGAGAACCTGACTGGCAGCATTAGGGTTCCAG-
** * * *
6031783 CTG-TCGGGGG-GGC-GGGGGGTGTACGCATATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTA
633 C-GATCGGGGGCACCGGGGGGGTGTACGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTA
6031845 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
697 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
6031910 TACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGACACTTTTTTCAAATGGTCACAA
762 TACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGACACTTTTTTCAAATGGTCACAA
6031975 AA
827 AA
6031977 TC
1 TC
6031979 TTGTACACTT
Statistics
Matches: 745, Mismatches: 73, Indels: 37
0.87 0.09 0.04
Matches are distributed among these distances:
824 38 0.05
825 1 0.00
826 2 0.00
827 4 0.01
830 3 0.00
832 2 0.00
833 5 0.01
834 106 0.14
835 253 0.34
836 115 0.15
837 215 0.29
838 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (828 bp):
TCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCAGAACCGTAA
AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGAGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCACAAATATGAAGATG
TACCTAACACACCACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGAAGTAGTGTTT
GCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAACAGAC
CAAACCGAGGGTTGCGACAGCAAGATCGGTACCACACAGAGGGTGACCCAGCCGATCCCCGACTT
GCGCATCCCGCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
AGAGTTCATTCCCAGTCTAACCATACAGAGTTCATTCACAATCTAAGATCAGACCGGACCGAGGG
TTCCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCAT
CACCGGAGCATCGCCAGAGAACCTGACTGGCAGCATTAGGGTTCCAGCGATCGGGGGCACCGGGG
GGGTGTACGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAATGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAAA
Found at i:6033008 original size:745 final size:742
Alignment explanation
Indices: 6031576--6033113 Score: 2262
Period size: 745 Copynumber: 2.1 Consensus size: 742
6031566 AGCACCTGCA
* * * * *
6031576 CGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCGCAGTCTAAGCATACAGAGTTCAT
1 CGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
* *
6031641 TCACAATCTAAGATCAGACCGGACCGAGGGTTCCGACAGCACATGCTGGGCTCGGGCATGTGCTG
66 TCACAATCTAAGATCAGACCGGACCGAGGGTTCCGACAACACATGCTGGGCTCAGGCATGTGCTG
* * * * * *
6031706 GTGCCACATTTTTCTTCACCGAGGCACCATCGCCGGAGCTTCGTCGGAGAACCTGACTGGCGGCA
131 GTGCCACAATTTTCTTCACCGAGGCACCATCGCCGAAGCATCGTCGGAGAACCTGACCGACGACA
* * * *
6031771 TTGGGGTTCCGACTGTCGGGGGGGCGGGGGGTGTACGCATATGATGTGCGGTGGGTGCTGGTACT
196 TTGGGGTTCCAACTGTCGGGGGGGCGGGGGGTGTACGCACATGATGTGCGATAGGTGCTGGTACT
*
6031836 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
261 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
6031901 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGACACTTTTTTCAAA
326 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGACACTTTTTTCAAA
* * **
6031966 TGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
391 TGCTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAACTTTTTTGTGCATAACAACAAAAATA
* * * *
6032031 CAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAGAATTTTAAAAAATCTCGAA
456 AAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAGAATTTTAAAAAATCCCGAA
** * *
6032096 CTGCAAAAAGTTTCGAATATCATGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACCTCACGTG
521 CCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACCTCACGTG
* * *
6032161 AAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGTCATTGGTACGCAGAAATATG
586 AAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGACATTGGCACACAGAAATATG
* * *
6032226 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAACCCGTCTCTTTGGCC
651 AAGATCTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCAACCCGTCTCTCTGGCC
*
6032291 AACGTAGTGCCCGCCTGCCCGCCCGCC
716 AACGTAGTGCCCGCCCGCCCGCCCGCC
* *
6032318 CGCTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCTCAGTCTAAGCATAC-GAAGTTCA
1 CGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG-AGTTCA
* * * * * *
6032382 TTCCCAGTCTAAGATCGGACCTGACCGAGGGTTGCGGCAACACATGCTGGGCTCAGGCATGTGCT
65 TTCACAATCTAAGATCAGACCGGACCGAGGGTTCCGACAACACATGCTGGGCTCAGGCATGTGCT
* ** *
6032447 GGTGTCGTAATTTTCTTCGCCG-GAGCACCATCGCCGAAGCATCGTCGGAGAACCTGACCGACGA
130 GGTGCCACAATTTTCTTCACCGAG-GCACCATCGCCGAAGCATCGTCGGAGAACCTGACCGACGA
*
6032511 CATTGGGGTTCCAAC-GATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATAGGTGCT
194 CATTGGGGTTCCAACTG-TCGGGGGGG-C--GGGGGGTGTACGCACATGATGTGCGATAGGTGCT
*
6032575 GGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
255 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
* *
6032640 GAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTT
320 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAAT-GGGACACTTT
* ** *
6032705 TTTCAAATGCTCTCAAAATCTTGTACACTTGGAGTTTTTAGCT-AACTTTTTTGTGCATAACAAT
384 TTTCAAATGCTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAACTTTTTTGTGCATAACAAC
* *
6032769 AAAACTAAAAGGATAACGTCTACCAATTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAA
449 AAAAATAAAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAGAATTTTAAAAA
* * *
6032833 ATCCCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
513 ATCCCGAACCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * *
6032898 TTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATG-CATAAAAATGACATTGGCACAT
578 CTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAA-GCCATAAAAATGACATTGGCACAC
* *
6032962 AGAAATATGAAGATCTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTC
642 AGAAATATGAAGATCTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCAACCCGTC
* ** *
6033027 TGTCTGGCCGGCGTAGTGCCCGCCCGGCCGCCCGCC
707 TCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCCGCC
* * *
6033063 CG-TTCATTTCGTCGGTTGGCTTATGCATAGGGAGTTCATTCCCAGTCTAAG
1 CGCTT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
6033114 ATTAGACCAA
Statistics
Matches: 711, Mismatches: 75, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
741 3 0.00
742 188 0.26
743 1 0.00
744 2 0.00
745 463 0.65
746 54 0.08
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (742 bp):
CGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCAT
TCACAATCTAAGATCAGACCGGACCGAGGGTTCCGACAACACATGCTGGGCTCAGGCATGTGCTG
GTGCCACAATTTTCTTCACCGAGGCACCATCGCCGAAGCATCGTCGGAGAACCTGACCGACGACA
TTGGGGTTCCAACTGTCGGGGGGGCGGGGGGTGTACGCACATGATGTGCGATAGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGACACTTTTTTCAAA
TGCTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAACTTTTTTGTGCATAACAACAAAAATA
AAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAGAATTTTAAAAAATCCCGAA
CCACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACCTCACGTG
AAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGACATTGGCACACAGAAATATG
AAGATCTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTGCGCAACCCGTCTCTCTGGCC
AACGTAGTGCCCGCCCGCCCGCCCGCC
Found at i:6035064 original size:26 final size:25
Alignment explanation
Indices: 6035028--6035077 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
6035018 TTGACTTAGG
6035028 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCA-TCTAAC
*
6035054 CATATGGAGTTCATTCCCATCTAA
1 CATACGGAGTTCATTCCCATCTAA
6035078 GATTGGACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (25 bp):
CATACGGAGTTCATTCCCATCTAAC
Found at i:6035375 original size:900 final size:895
Alignment explanation
Indices: 6034086--6036750 Score: 3759
Period size: 897 Copynumber: 3.0 Consensus size: 895
6034076 CCCCTCTGAT
* * *
6034086 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCACACGGAGTTCATTCTCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
6034151 AGCATATGGAGTTCATTCCCAATCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCACATGCTGG
66 AGCATATGGAGTTCATTCCC-ATCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGG
* * *
6034216 GCTCAGGCATGTGCTGGTGTGACATTTTTCTTC-ACCGGGCACCATCGTCGGAGCATCGTCAGAG
130 GCTCAGGCATGTGCTGGTGTG--ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAG
* * * * *
6034280 AACCTGACCAGTGGCATTGAGGTTCCGATGATCGGTGGGGTCGGAAGGGGTGTGCGCACATGATG
193 AACCTGATCGGCGGCATTG-GGTTCCGATGATCGGGGGGGTCGG-GGGGGTGTGCGCACATGATG
**
6034345 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
256 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * *
6034410 ACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTCCTACCAGTAGCCATTAAAGTCTCTGAA
321 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAA
*
6034475 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAATTATTT
386 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTT
* * * * *
6034540 TT-TGTATTCCAAAAAAAATACATGGATCACGTCTACAAAGTTTGGAGCCAAAACTCCTTTCAAA
451 TTATGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAA
** * * ** * *
6034604 AAAATTTTAAAAAATCTTGTACCACAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTTGT
516 AAAATTTTAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
6034669 CTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
581 CTTGCCATGAAACTTCACGTGAAG-CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
6034734 GCATTGGCATCCAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
645 GCATTGGCA-CCAG-AAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* **
6034799 TGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTCAC
708 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGC
* * *
6034864 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCA-AACTGGATTGAGGGTTGCGGCAGCAGGAT
773 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGATTGAGGGTTGCGGTAGCAGGAT
*
6034928 C-AGTAGCACACAGAGGGGGACCCGACCGATCCCCGTCTTGCACATCCCACCCCTCTAGC
837 CGA-TAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCACATCCCACCCCTCTAGC
*
6034987 CGGCTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
1 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
6035052 ACCATATGGAGTTCATTCCCATCTAAGATTGGACCACACCGAGGGTTGTGGCAGCAAATGCTGGG
66 AGCATATGGAGTTCATTCCCATCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * *
6035117 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGAACCATCGCCGGATCATCGTCAGAGA
131 CTCAGGCATGTGCTGGTG-TG-ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGA
* *
6035182 ACCTGATCGGCGGCATTGGGATTCCAATGATCGGGGGGGTCGGGGGGGTGTGCACACATGATGTG
194 ACCTGATCGGCGGCATTGGG-TTCCGATGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
*
6035247 CGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
258 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
6035312 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
323 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
6035377 GGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TATTTTT
388 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTT
* * * * * * * *
6035441 GTGCACACCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAAGTCCTTCCGAAAA
453 ATGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAA
* * *
6035506 AATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCT
518 AATTTTAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
6035571 TGCCATGAAACTTCACGTGAAAGCTGAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGC
583 TGCCATGAAACTTCACGTG-AAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
6035636 ATTGGCAAGCAGAAATATTAAGATGTCCCTAAACCCACCTACCACACTATCGATCCACCGCTTGC
647 ATTGGC-ACCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * * *
6035701 ACATCCC-TCTCTCTGGCCGAGGTAGTGCTAGCCCGTCCGCCCGCTCGTTTCGTTGGTTGGCTTA
711 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
6035765 GGCATACGGAGTTCATTCCTAGTCTAAGATCAGATGGGATTGAGGGTTAC-GTAGCAGGATCGAC
776 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGCGGTAGCAGGATCGAT
* * * *** * * * *
6035829 AGCACACAGAGGGGGACCCGGCTGATCCTCGACTTGTGTATCCCGCTCCTTTGGC
841 AGCACACAGAGGGGGACCCGACCGATCCCCGACTTGCACATCCCACCCCTCTAGC
* * * * *
6035884 C-GCTGAGCGCCCGCAAGCTCATTTCATGGGTTGACTTTGGCATACGAAGTTCATTCCCAATCTA
1 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** *
6035948 AGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGG
66 AGCATATGGAGTTCATTCCCA-TCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGG
*
6036013 GCTCAGGCATGTGCTGGTGTGACTTTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCAGAG
130 GCTCAGGCATGTGCTGGTGTGA--TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAG
* * * *
6036078 AACCT-ATCTGGCGGCATTGGGGTTCTGATGATTGGGGGGGCCGGGGGGTTGTGCGCACATGATG
193 AACCTGATC-GGCGGCATT-GGGTTCCGATGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATG
**
6036142 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTTATCCCTCATCAAACCTCAAGAACTC
256 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * * *
6036207 ACACCTCCTTAAAGAGCATTTAAGATTTTATAGGTTTACTGCCAGTAGCAATTAAACTGTCTGAA
321 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAA
* ** *
6036272 ATGGGGATACTTTTTTCAAATGGTCACAAAATCTTAAACAATTCGAGTTTTTAGCTGAATT-TTT
386 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTT
* * * *
6036336 TTATGCATGCCAAGAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAA
451 TTATGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAA
* *
6036400 AAAATTTTAAAAAATCCCAAACTACTAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
516 AAAATTTTAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
6036465 CTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCAATAAAAATG
581 CTTGCCATGAAACTTCACGTGAA-GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
6036530 GCATTGGCACGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
645 GCATTGGCAC-CAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
6036595 GTGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCACCTGCTCGCCCGTCCACTCGCTCGTTTCGTC
709 GCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCGCCCGT---C-CGCTCGTTTCGTC
* * *
6036660 GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTACGATCAGATCGGATCGAGGGTTGCGGTAG
766 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGCGGTAG
* *
6036725 TAGGATCGATAGCACGCAGAGGGGGA
831 CAGGATCGATAGCACACAGAGGGGGA
6036751 TTTGGCTGAT
Statistics
Matches: 1564, Mismatches: 174, Indels: 47
0.88 0.10 0.03
Matches are distributed among these distances:
895 4 0.00
896 266 0.17
897 444 0.28
898 96 0.06
899 64 0.04
900 442 0.28
901 154 0.10
904 1 0.00
905 66 0.04
906 27 0.02
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (895 bp):
CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATATGGAGTTCATTCCCATCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
CTCAGGCATGTGCTGGTGTGATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAGAAC
CTGATCGGCGGCATTGGGTTCCGATGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTTATG
CATACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAAT
TTTAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACCAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATTGAGGGTTGCGGTAGCAGGATCGATAGCAC
ACAGAGGGGGACCCGACCGATCCCCGACTTGCACATCCCACCCCTCTAGC
Found at i:6035953 original size:26 final size:26
Alignment explanation
Indices: 6035923--6035975 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6035913 GTTGACTTTG
6035923 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
6035949 GCATATGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
6035975 G
1 G
6035976 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:6037119 original size:774 final size:766
Alignment explanation
Indices: 6035989--6037505 Score: 2210
Period size: 774 Copynumber: 2.0 Consensus size: 766
6035979 GGACCGGACC
* *
6035989 GAGGGTTACGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTGTGACTTTTTTCTTCGTCGGGGC
1 GAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCGAC-TTTTTCTTCGTCGGGGC
* * * *
6036054 ACCATCGCCAGAGCATCGTCAGAGAACCTATCTGGCGGCATTGGGGTTCTGATGATTGGGGGGGC
65 ACCATCACCAGAGCATCGTCAGAGAACCTATCTGGCGGCATTGCGGTTCTGACGATTCGGGGGGC
* * **
6036119 CGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTTTAT
130 CGGGGGGTTGTGCACACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
6036184 CCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTAAGATTTTATAGGTTTACTGC
195 CACTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTACTGC
6036249 CAGTAGCAATTAAACTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTAAACAAT
260 CAGTAGCAATTAAACTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTAAACAAT
* *
6036314 TCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAGAAAAATATAAGGATCACGTCTACCAAGTT
325 TCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* *
6036379 TGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCAAACTACTAAAA-GTTTCAAAAATC
390 TGGGGCCAAAACTCCTTCCAAAAAAAATTTAAAAAATCCCAAACCA-TAAAAGGTTTCAAAAATC
* *
6036442 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTA
454 ATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTA
*
6036507 TGAATTTACAAGCAATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTTCCTAAACCCACCT
519 TGAATTTACAAGCAATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * ** * *
6036572 ACCACCCTATCGATCCACGGCTTGTGCAT-CTCGTCTCTCTGGCCGGCGTAGTGCCCACCTGCTC
584 ACCACCCTACCGAGCCACGGCTTACGCATCCT-GTCTCTCTGGACGGCGTAGT----ACCCGC-C
* * * *
6036636 GC-CCGTCCACTCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTACGAT
643 -CACC-TCC-C-CGCTCATTTCGTCGGTTCGCTTAGGCATACAGAGTCCATTCCCAGTCTAAGAT
* * *
6036700 CAGATCGGATCGAGGGTTGCGGTAGTAGGATCGATAGCACGCAGAGGGGGATTTGGCTGATCT
704 CAGACCAGATCGAGGGTTGCGGTAGCAGGATCGATAGCACGCAGAGGGGGATTTGGCTGATCT
6036763 GAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTA-TTTTTCTTCGTCGGGG
1 GAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTG-CG-ACTTTTTCTTCGTCGGGG
* * * *
6036827 CATCATCACCGGAGCATCG-CTGGAGAACCTAATC-GGTGGCATTGCGGTTCT-AGCGA-TCGGG
64 CACCATCACCAGAGCATCGTC-AGAGAACCT-ATCTGGCGGCATTGCGGTTCTGA-CGATTCGGG
*
6036888 GGGCCGGGGGG-TGTGCACACATGATATGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
126 GGGCCGGGGGGTTGTGCACACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
6036952 CTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
191 CTATCACTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTA
* *
6037017 CTGCCAGTAGCCATTAAAGTGTCTGAAA-GGGGAAAATACTTTTTTCAAATGGTCACAAAATCTT
256 CTGCCAGTAGCAATTAAACTGTCTGAAATGGGG---ATACTTTTTTCAAATGGTCACAAAATCTT
** * *
6037081 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
318 AAACAATTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * *
6037146 CCAAGTTTGTGGCCAAAACTCCTTCCAAAAAAAATTTAAAAAATCTCGAACCATAAAAGGTTTTA
383 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAATTTAAAAAATCCCAAACCATAAAAGGTTTCA
* * * *
6037211 AAAATCGTGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCATGTGAGGGCTTAAGGGACC
448 AAAATCATGAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACC
* * * *
6037276 ATTGTATGAATTTACAAGCCATAGAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAAC
513 ATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
*
6037341 CCACCTACCACCCTACCGAGCCACGGCTTACGCATCCTGTCTCTCTGGATGGCGTAGTACCCGCC
578 CCACCTACCACCCTACCGAGCCACGGCTTACGCATCCTGTCTCTCTGGACGGCGTAGTACCCGCC
* *
6037406 CACCTGCCCGCTCATTTTGTCGGTTCGCTTAGGCATACAGAGTCCATTCCCAGTCTAAGATCAGA
643 CACCTCCCCGCTCATTTCGTCGGTTCGCTTAGGCATACAGAGTCCATTCCCAGTCTAAGATCAGA
*
6037471 CCAGATCGAGGGTTGCGGTAGCAGGATCGGTAGCA
708 CCAGATCGAGGGTTGCGGTAGCAGGATCGATAGCA
6037506 TGTAAATGGG
Statistics
Matches: 668, Mismatches: 63, Indels: 31
0.88 0.08 0.04
Matches are distributed among these distances:
767 83 0.12
768 1 0.00
769 3 0.00
770 3 0.00
771 9 0.01
772 133 0.20
773 17 0.03
774 217 0.32
775 199 0.30
776 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (766 bp):
GAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCGACTTTTTCTTCGTCGGGGCA
CCATCACCAGAGCATCGTCAGAGAACCTATCTGGCGGCATTGCGGTTCTGACGATTCGGGGGGCC
GGGGGGTTGTGCACACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
ACTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTACTGCC
AGTAGCAATTAAACTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTAAACAATT
CGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCTTCCAAAAAAAATTTAAAAAATCCCAAACCATAAAAGGTTTCAAAAATCAT
GAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATG
AATTTACAAGCAATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTACCGAGCCACGGCTTACGCATCCTGTCTCTCTGGACGGCGTAGTACCCGCCCACCTCCC
CGCTCATTTCGTCGGTTCGCTTAGGCATACAGAGTCCATTCCCAGTCTAAGATCAGACCAGATCG
AGGGTTGCGGTAGCAGGATCGATAGCACGCAGAGGGGGATTTGGCTGATCT
Found at i:6038246 original size:492 final size:499
Alignment explanation
Indices: 6037302--6038303 Score: 1236
Period size: 492 Copynumber: 2.0 Consensus size: 499
6037292 AGCCATAGAA
*** * *
6037302 ATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGAGCCACGG
1 ATGGCATTGGCACACAGAAATATCAAGATGTCCCTAAACCCACCTACCACCCTACCGAGCCACGG
* * ** * *
6037367 CTTACGCATCCTGTCTCTCTGGATGGCGTAGTACCCGCCCACCTGCCCGCTCATTTTGTCGGTTC
66 CTTACACATCCCGTCTCTCTGGACAGCG-AGTA-CCGCCCA-C--CCCGCTCATTTCGTCGGTTA
*
6037432 GCTTAGGCATACAGAGTCCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGTAGCAGGA
126 GCTTAGGCATACAGAGTCCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGATAGCAGGA
** *** * * * * *
6037497 TCGGTAGCATGTAAATGGGGATCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCTGACT
191 TCGACAGCACACAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCACCCCTCTAGCCGACT
* *
6037562 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCCAACCAC
256 GAGCGCCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAACCAC
* **
6037627 ATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCAAATGCTGGGCTCA
321 ACGGAGTTCATT-CCA--CTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAATGCTGGGCTCA
* * * * * * *
6037692 GGCATGTGCTGGTGTCATATTTTTCTTCGTCGGGGCATCATTATCGGAGCATCGTCGGAGAACCT
383 GGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGCCGGAGAACCT
** *
6037757 GACCGGTGGCATTAGG-GTTCCAACGATCGGGAGGGCTGGAGGGGTGTGCACAC
448 GACCGACGGCATT-GGAGTTCCAACGATCGGGAGGGCCGG-GGGGTGTGCACAC
* *
6037810 ATGGCATTGGCACACAGAAATATCAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGG
1 ATGGCATTGGCACACAGAAATATCAAGATGTCCCTAAACCCACCTACCACCCTACCGAGCCACGG
* * * *
6037875 CTTCCACATCCCGTCTCTCTGGCCAGC-A-TA-TGCCCA-CCCGCTCGTTTCGTCGGTTAGCTTA
66 CTTACACATCCCGTCTCTCTGGACAGCGAGTACCGCCCACCCCGCTCATTTCGTCGGTTAGCTTA
* * * * *
6037936 GGCATGCGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-CTGAGGGTTGCGATAGCAGGATCGA
131 GGCATACAGAGTCCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGATAGCAGGATCGA
* *
6038000 CAGCACACAGAGGGGGACCCGA-CTGATCCCCGGCTTGTGCATC-CTACCCCTCTAGCCG-CTGA
195 CAGCACACAAAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCTC-ACCCCTCTAGCCGACTGA
* * * * *
6038062 GCGCCCGTAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATAC
258 GCGCCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAACCACAC
* *
6038126 GGAGTTCATT-C-CTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCAT
323 GGAGTTCATTCCACTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAATGCTGGGCTCAGGCAT
* *
6038189 GTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGCCGGAGAACTTGACCG
388 GTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCG
* * * *
6038254 ACGGCATTGGAGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCAC
453 ACGGCATTGGAGTTCCAACGATCGGGAGGGCCGGGGGGTGTGCACAC
6038301 ATG
1 ATG
6038304 ATGTGCGATA
Statistics
Matches: 427, Mismatches: 63, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
491 17 0.04
492 129 0.30
495 1 0.00
497 21 0.05
498 52 0.12
499 120 0.28
503 5 0.01
505 2 0.00
506 1 0.00
508 79 0.19
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (499 bp):
ATGGCATTGGCACACAGAAATATCAAGATGTCCCTAAACCCACCTACCACCCTACCGAGCCACGG
CTTACACATCCCGTCTCTCTGGACAGCGAGTACCGCCCACCCCGCTCATTTCGTCGGTTAGCTTA
GGCATACAGAGTCCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGATAGCAGGATCGAC
AGCACACAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCACCCCTCTAGCCGACTGAGCG
CCCGCAAGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAACCACACGGA
GTTCATTCCACTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAAATGCTGGGCTCAGGCATGTG
CTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACG
GCATTGGAGTTCCAACGATCGGGAGGGCCGGGGGGTGTGCACAC
Found at i:6038998 original size:26 final size:26
Alignment explanation
Indices: 6038960--6039009 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
6038950 GTTGACTTAG
*
6038960 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6038986 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
6039010 GAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6039902 original size:26 final size:26
Alignment explanation
Indices: 6039866--6039918 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6039856 GTTGACTTAG
6039866 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
6039892 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6039918 G
1 G
6039919 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6041325 original size:871 final size:868
Alignment explanation
Indices: 6040360--6045419 Score: 4625
Period size: 903 Copynumber: 5.8 Consensus size: 868
6040350 AAAATTTTAA
* * * *
6040360 AAAATCATGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTCAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * * *
6040425 ATTGTATGAATTTACAAGCCACAAAAATGGTATTGGCACATAGAAGTACGAAGATTTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATACGAAGATGTGCCTAAAC
* *
6040490 CCACCTACCACCCTATCGATCTACAGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCGCC
* * *
6040555 CGCCCGCTCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGAACCG
195 CGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCA
* * * * *
6040619 GACTGAGGGTTGCGATAGCAGGATCGACAACAGGTAGAAGGGGACCCGACCGATGCCCGGCTTGC
259 GACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGC
* * * * * * *
6040684 TCATCCCGCCCCTCTAGCCGACTGAGCGCCTGCATGCTTGTTTCGTGGGTTGACTTAGGCATACG
324 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * *
6040749 GAGTTCCTTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGTACATGCTGGGCTCAGGC
389 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * ** *
6040814 ATGTGCTGGTGCCATA-TTTGTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGA
454 ATGTGCTGGTGCCGCACTTT-TCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * * *
6040878 CCGGCTGCATTGGGGTTCCGGCGATCGAGGGGGCTCGGGGGGGTGTGCGCAAAAGATGTGCGATG
518 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGGTGTGCGCACATGATGTGCGATG
6040943 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
582 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
6041008 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
647 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
6041073 CACTTTTTTCAAAGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCAT
712 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCAT
**
6041138 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTT
776 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
*
6041203 AAAAAATCCCGAACCGTAAAAAGTTTCG
841 AAAAAATCCCGAACCGCAAAAAGTTTCG
* *
6041231 AAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
** * *
6041296 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAATC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATACGAAGATGTGCCTAAAC
* * * * *
6041361 CCGCTTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTATGGCTGACGTAGTGCTCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-GGCGTA--G-T-GCC
* * *
6041426 CGCCCGCCTGCTCATTTCATCGGTTGGCTTAGGCATAC-GAG---------GGT-T--G-T--G-
191 CGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * **
6041474 GCAG-C--AGGATT--GGTAGC---AT-----GCA-G-AG-A-GGGATCCGACCGATCCTTGGCT
256 CCAGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCCGGCT
* * * * *
6041522 TGCG-ATCCTGCCCCTATGGCCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACGTAGGCAT
321 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
*
6041586 ACGGAGTTCATTCCCAATCTAAATATACGGAGTTCATTCTCAGTCTAAGATCAGATTGGACCGAG
386 ACGGAGTTCATTCCCAGTC------TA---AG---A---TC-G-----GATC-----GGACCGAG
* * * * * * *
6041651 GGTTGTGACAGTAGATGCTGGGCTCGGAG-ATGTGCTGGTGCCGCAGTTTTCTTCGCCAGGGCCC
425 GGTTGCGGCAGCACATGCTGGGCTCGG-GCATGTGCTGGTGCCGCACTTTTCTTCGCCGGGGCAC
** * *
6041715 CATCACCAGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCCG-TGATC-GGGGGGCC
489 CATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTT-CCGACGATCGGGGGGGCC
* *
6041778 GGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATC
553 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
*
6041843 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
618 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
6041908 AATAGCCTTTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTT
683 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
6041973 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAAGATCATGTCTACCTAGTTT
748 CGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * *
6042038 GGGGCCAAAAATACTTCCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCA
812 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCG
* * * * *** *
6042095 AAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATAAAAATGGCATTGGCACGCAGAAATATG
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT-GAAA---C-TT--CACG-TGAAGGCTT
** *** ** * * *** * * ***** *
6042160 AAGTTGTG-CCA--AAACCCACCTACCACCCTATCGATCCATGGC-TTGCGTACCCCTTCTTTCT
58 AAG--G-GACCATTGTATGAATTTACAAGCC-AT--AAAAATGGCATTG-GCACACAGAAATAC-
** * ** ** *** * *
6042221 G--GCCG-GCGTAGTGCCCACCCGCCAGCCCGCCCG-T-C-C-G-TT---CAT----TTTGTC-G
115 GAAGATGTGCCTA-AACCCACCTACCA-CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *** ** * * ** * * *
6042270 GTTGGCTTAG-G--CATACG-GAGTTCATTCCCAGTC--TAAGATTAGACCGGAT-CGAGGGTT-
178 G-CGGCGTAGTGCCCGCCCGCCCGCTCATT-TC-GTCGGTTGGCTTAG---GCATACG-GAGTTC
* ** * * * * * * *
6042327 -GTGGCAG-C-AGGAT-TG-GCTGCACGTAGAGGG-GGAC-CTGACCA--ATC--C--C-CGGC-
236 ATTCCCAGTCTAAGATCAGACCAG-AC-T-GAGGGTTG-CGGT-AGCAGGATCGACAGCAC-GCA
** * * ** * * * ** * *
6042377 TTA-CGCACCTCG-CCCCTCTGGCTGGC-TGAGCA-CCCGCACGCTCCTTTCGTGGGTTGACTTA
295 GAAGGGGACC-CGACCGATC--CCCGGCTTGCGCATCCCG--C-C-CC--TC-T-GGCCGGCTGA
* ** * * * * * * * *
6042438 GAAATACGGA-GTTCATTCCCT--G-T--C-TAAGCATATGGAGTTCATTCCCAGTCTAAGATCA
349 G-CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * ** * * * * *
6042496 GACCAGACCGAGGGTTGTGGCAGCACATTTTGGGCTCGAGCATGTGTTGGTGTCGTATTTTTCTT
413 GATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCACTTTTCTT
* * *
6042561 CGTCGGCGCACCATCG-C----CA------GAGAACCTCACCGACGGCATTGGGGTTCCGACGAT
478 CGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * ** * * *
6042615 CGGGGGGGCCGGTGTGGTGTGTTCCCATGATGTACGATGGGTGCTAGTACTTGGCCCTTATATTG
543 CGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
6042680 GCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
608 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
6042745 CTCT-CTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAAT
673 GTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
6042809 CATGTACACTTCGAGTTTTTAGCTGAATTTGTTTGTGCATGCCAACAAAATTAGAAGGATCACGT
737 CTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTGTGCATGCCAACAAAAATACAAGGATCACGT
* ** * *
6042874 CTACCAAGCTTGGGGCCAAAACTCCTTATGAAAAAATTTTAAAAAAT-CCTAACAAGCAAAAAGT
801 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC-CGCAAAAAGT
*
6042938 TTCA
865 TTCG
* *
6042942 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* ** * *
6043007 ATTGTATGAATTTACAAGCCATAAAAGTGGCATTCACACACAAAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATACGAAGATGTGCCTAAAC
*
6043072 CCACC-ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCGCC
* * * * *
6043136 CGCCCGCCCACCGCTTGTTTCGTCGGTTGGCTTATGTATATGGAGTTCATTCCCAATCTAAGATC
195 CGCCCGCTCA-------TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
6043201 AGACCAGACCGGGGGTTGCGGTAGCAAGATCAACAGTACGCAGAAGGGGACCCGGCCGATCCCCA
253 AGACCAGACTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCCG
** * *
6043266 GCTTGCGCATCTTGCCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGG
318 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
6043331 CATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTAATTCCCAGTCTAAGATCGGACCAAACC
383 CATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G-----GATCGG-----ACC
*
6043396 GAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCACTTTTCTTCGCCGGGGC
422 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCACTTTTCTTCGCCGGGGC
** * * *
6043461 ACCATCGTCGGAGCATCGCCAAAGAACTTGACTGACGGCATTGGGGTTCCGACAATCGGGGGGGC
487 ACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* *
6043526 CGGGGGGGTGTCCGCACATGATGTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
552 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
6043591 CCCACATCAAACTTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
617 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
6043656 CAGTAGCCATTAAAGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGGTCCTC
682 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-GTACAC
* * * * *
6043721 TTCGA-TATTTTAGTTGAATGTTTTTATGCATGCCAAAAAAAAGACAGGGATCACGTCTACCAAG
746 TTCGAGT-TTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* *
6043785 TTTGGGGCCAAAACTCTTTCCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCG
809 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCG
* *
6043845 AAAATCCTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
** **
6043910 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT-CTGAAGATGTGATTAAA
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAC-GAAGATGTGCCTAAA
* * * *
6043974 CCCACCTACCACCCTATCGAACCACGGCTTGCGCATCTCGTCTCT-TCGACTGGCATAGTGCCCG
130 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGC-GGCGTAGTGCCCG
* * * * * *
6044038 CCCACCCG-TCCGTTTTGTCGGTTGGCTTGGGCATACTGAGTTCATTCCCAGTCTAAGATCAGAT
193 CCCGCCCGCT-CATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * *
6044102 CACA-TCGAGGGTTGTGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGCCGATCCCTGACT
257 CAGACT-GAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCCGGCT
** *
6044166 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGACAT
321 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* ** * *
6044231 ACGGAGCTCATTCTTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGCGCTCG
386 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * *
6044296 GGCATGTGCTGGTGCCGCACTTTTCTTTGCCGGGGCACCATCGTTGGAGCATCGCCGAAGAACTT
451 GGCATGTGCTGGTGCCGCACTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCT
* *
6044361 GACCGGCGGCATTGGGGTTCCGACGATCGGGGTGGCC-GGGGGGTGTGCGCACATGATGTGCGAT
516 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
6044425 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-ATGAACTCACACC
581 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACC
* *
6044489 TCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGG
645 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * **
6044554 GACATTTTTTTCAAATGGCCACAAAATCTTCCACACTTCGAGTTTTTAGCTGAATTTTTTGTGCA
710 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCA
*
6044619 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTT
775 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* *
6044684 TAAAAAAT-CTGAAACCGTAAAAAGTTTCG
840 TAAAAAATCCCG-AACCGCAAAAAGTTTCG
* *
6044713 AAGATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
** *
6044778 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATACGAAGATGTGCCTAAAC
* * *
6044843 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCGACGTAGTTCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCGGCGTAG-T---GCC
* * *
6044908 CGCCCTTCCGCCTGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCTCAGTCTAAGAT
191 CG--C--CCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
*** * * *
6044973 CAGACCAGACCT-ATATTTACGGTAGCAGGATCGACAGCACACAG-AGGTGGACTCGACCGATCC
252 CAGACCAGA-CTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAAGG-GGACCCGACCGATCC
* * * *
6045036 CCGGCTTGCACATTCCGCCCCTCTGGCCGACTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
315 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
*
6045101 AGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATCTAAGATCGGACGAG
380 AGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C---G----------------GATCGGAC---
* * * * * * **
6045166 AGCGAGGGTTACAGCAGCACATGTTAGGCTCGGGCATGTGCTGGTGCTGCA-TTTTTTTCATCGG
421 --CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCACTTTTCTTCGCCGG
* *
6045230 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTTGGGTTCCGACGATCGGGGG
484 GGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
** * *
6045295 GGCCGAGGGGGGTGTGCTTACATGATGTGTGATGGGTACTGGTACTTGGCCCTTATATTGGCCCC
549 GGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
6045360 TTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTATAGAGCATTTGAGATTTTACAG
613 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
6045420 AGCATTTGAG
Statistics
Matches: 3388, Mismatches: 537, Indels: 496
0.77 0.12 0.11
Matches are distributed among these distances:
835 6 0.00
836 14 0.00
837 15 0.00
838 7 0.00
839 17 0.01
840 74 0.02
841 21 0.01
842 3 0.00
843 6 0.00
844 1 0.00
845 5 0.00
846 43 0.01
847 321 0.09
848 9 0.00
849 3 0.00
850 2 0.00
851 3 0.00
852 6 0.00
853 5 0.00
854 12 0.00
855 11 0.00
856 13 0.00
857 68 0.02
858 12 0.00
859 30 0.01
860 9 0.00
861 14 0.00
862 13 0.00
863 6 0.00
864 332 0.10
865 40 0.01
866 113 0.03
867 24 0.01
868 265 0.08
869 25 0.01
870 179 0.05
871 295 0.09
872 20 0.01
873 8 0.00
874 29 0.01
875 58 0.02
876 184 0.05
877 8 0.00
878 4 0.00
879 1 0.00
880 9 0.00
881 10 0.00
882 6 0.00
883 24 0.01
884 3 0.00
885 3 0.00
886 5 0.00
887 2 0.00
888 3 0.00
889 14 0.00
890 3 0.00
891 66 0.02
892 2 0.00
895 1 0.00
896 2 0.00
897 175 0.05
901 73 0.02
902 250 0.07
903 337 0.10
904 66 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (868 bp):
AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATACGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGGCGTAGTGCCCGCCC
GCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
CTGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGC
ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCACTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG
ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCCCGAACCGCAAAAAGTTTCG
Found at i:6041620 original size:26 final size:26
Alignment explanation
Indices: 6041584--6041633 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
6041574 TGACGTAGGC
6041584 ATACGGAGTTCATTCCCAATCTAAAT
1 ATACGGAGTTCATTCCCAATCTAAAT
* *
6041610 ATACGGAGTTCATTCTCAGTCTAA
1 ATACGGAGTTCATTCCCAATCTAA
6041634 GATCAGATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAAT
Found at i:6042805 original size:847 final size:851
Alignment explanation
Indices: 6040742--6045419 Score: 3568
Period size: 864 Copynumber: 5.3 Consensus size: 851
6040732 GTTGACTTAG
* * * *
6040742 GCATACGGAGTTCCTTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGTGGCAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
** * *
6040807 CTC-AGGCATGTGCTGGTGCCATA-TTTGTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGA
66 CTCGA-GCATGTGCTGGTGCCGCACTTT-TCTTCGCCGGGGCACCAT---C---GC-GCA---GA
* * * * * *
6040870 GAACCTGACCGGCTGCATTGGGGTTCCGGCGATCGAGGGGGCTCGGGGGGGTGTGCGCAAAAGAT
119 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-C-GGGGGGTGTGCGCACATGAT
6040935 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
182 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
6041000 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
247 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
6041065 AATGGGGACACTTTTTTCAAAGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
312 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* **
6041130 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAA
377 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
6041195 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAAGGAGTCGT
442 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
*** *
6041260 CTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAA--A
507 CTTGCCATGAAA---CA---GAAGGCTTA-GGGACCAAAATATGAAGTTA-AAGCCA-AAAATCA
** *** * * * * * **
6041323 -TGGCATTGGC-ATGCAGAAATATGAAGATGTGCCTAATCCC-GCTTAC-CACC--C-TA-T--C
563 CTACCA-CCCCTAT-CAGATACATG-AGAT-TGCCT-ACCCCTTCTTTCTGGCCGGCGTAGTGCC
* * * * ** * ** * * * * *** ** *
6041378 GATCC-ACGGCTTGCGCATCCTGTCTCTATGGCTGAC-GTAGTGC-TCGCCCGCCCGCCTGCTCA
623 CACCCGCCAGCCCGCCCATCC-GT-TC-AT-TTTGTCGGTTG-GCTTAG-GCATACG-GAGTTCA
* ** * * * * * ** * *
6041440 TT-TCA-TCGGTTGGCTTAG-GCATA-CGAGGGTTGTGGCAGCAGGATTGGTAGCATGCAGAGAG
681 TTCCCAGTC--TAAGATCAGACCACATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGG
* ** * * *
6041501 GGATCCGACCGATCCTTGGCTTGCG-ATCCT-GCCCCTATGGCCGGCTGAGCGCTCGCACGCTCG
744 GGACCCGACCGATCCCCGGCTTGCGCATCCTCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCG
* * **
6041564 TTTCGTGGGTTGACGTAGGCATACGGAGTTCATTCCCAATCTAA
809 TTTCGTGGGTTGACTTAGACATACGGAGTTCATT-CCTGTCTAA
** * * ** * * *
6041608 ATATACGGAGTTCATTCTCAGTCTAAGATCAGATTGGACCGAGGGTTGTGACAGTAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * *
6041673 CTCGGAG-ATGTGCTGGTGCCGCAGTTTTCTTCGCCAGGGCCCCATCACCAGAGCATCGCCGGAG
66 CTC-GAGCATGTGCTGGTGCCGCACTTTTCTTCGCCGGGGCACCAT---C---G---CG-CAGAG
* *
6041737 AACCTGACCGACGGCATTGGGGTTCCCG-TGATC-GGGGGGCCGGGGGGGTGTGCACACATGATG
120 AACCTGACCGACGGCATTGGGGTT-CCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
* *
6041800 TGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
183 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
6041865 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCTTTAAAGTGTCTGAA
248 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
6041930 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
313 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
6041995 TGTGCATGCCAACAAAAATACAAAGATCATGTCTACCTAGTTTGGGGCCAAAAATACTTCCGAAA
378 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
6042060 AAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
443 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * ** **
6042125 TTGCCAT-AAA-A-ATGGCATT-GGCACGCAGAAATATGAAGTT-GTGCCAAAACCCACCTACCA
508 TTGCCATGAAACAGAAGGC-TTAGGGAC-CA-AAATATGAAGTTAAAGCCAAAAATCA-CTACCA
* * *
6042185 -CCCTATC-GATCCATG-GCTTGCGTACCCCTTCTTTCTGGCCGGCGTAGTGCCCACCCGCCAGC
569 CCCCTATCAGATACATGAGATTGCCTACCCCTTCTTTCTGGCCGGCGTAGTGCCCACCCGCCAGC
* *
6042247 CCGCCCGTCCGTTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG
634 CCGCCCATCCGTTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
** * * * * * *
6042312 ACCGGATCGAGGGTTGTGGCAGCAGGATTGGCTGCACGTAGAGGGGGACCTGACCAATCCCCGGC
699 ACCACATCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * *
6042377 TTACGCA-CCTCGCCCCTCTGGCTGGCTGAGCACCCGCACGCTCCTTTCGTGGGTTGACTTAGAA
764 TTGCGCATCCTCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGAC
6042441 ATACGGAGTTCATTCCCTGTCTAA
829 ATACGGAGTTCATT-CCTGTCTAA
* * * **
6042465 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATTTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * * * * *
6042530 CTCGAGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGCGCACCATCGC-CAGAGAACCTCACCGA
66 CTCGAGCATGTGCTGGTGCCGCACTTTTCTTCGCCGGGGCACCATCGCGCAGAGAACCTGACCGA
* ** * *
6042594 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGTGTGGTGTGTTCCCATGATGTACGATGGGTGC
131 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
6042659 TAGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
6042724 AGAGCATTTGAGATTTTACAGCTCT-CTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
260 AGAGCATTTGAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
6042788 TTTTTCAAAGGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTGTTTGTGCATGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * **
6042853 ACAAAATTAGAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTATGAAAAAATTTTAAAA
389 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * *
6042918 AAT-CCTAACAAGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
454 AATCCCGAAC-CGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *** *
6042982 ACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTCACACA
518 A---CA---GAAGGCTT-AGGGACCAAAATATGAAGTTA-AAGCC--AAAA-----A-T----CA
* * ** * * * *
6043047 CAAAAATATGAAGATGTGCCTAAACCCACCACCACCCTATCGATCCACGGCTTGCGC-ATCCCGT
563 C-------T----A----CC---ACCC-CTATCA-GATA-C-AT-GA--GATTGC-CTACCCCTT
* * * * * *
6043111 CTCTCTGGTCGGCATAGTG----CCCGCCCGCCCGCCCA-CCGCTT-GTTTCGTCGGTTGGCTTA
602 CTTTCTGGCCGGCGTAGTGCCCACCCGCCAGCCCGCCCATCCG-TTCATTTTGTCGGTTGGCTTA
* * * * * * * * * * *
6043170 TGTATATGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGGGGGTTGCGGTAGCAAGATCAAC
666 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCACATCGAGGGTTGTGGCAGCAGGATCGAC
* * * * * *
6043235 AGTACGCAGAAGGGGACCCGGCCGATCCCCAGCTTGCGCAT-CTTGCCCCTCTGGTCGGCTGAGC
731 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTCGCCCCTCTGGCCGGCTGAGC
* * *
6043299 ACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAA
796 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATTCCT-GTCTAA
* ** **
6043356 GCATACGGAGTTAATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
*
6043421 CTCGGGCATGTGCTGGTGCCGCACTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAAAGA
66 CTCGAGCATGTGCTGGTGCCGCACTTTTCTTCGCCGGGGCACCATCG-C---GCA--G----AGA
* * * *
6043486 ACTTGACTGACGGCATTGGGGTTCCGACAATCGGGGGGGCCGGGGGGGTGTCCGCACATGATGTG
121 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * * *
6043551 CGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACTTTGAGAACTCAC
185 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
6043616 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAAT
250 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
6043681 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGGTCCTCTTCGA-TATTTTAGTTGAATGTTTT
315 GGGGACACTTTTTTCAAATGGTCACAAAATCTT-GTACACTTCGAGT-TTTTAGCTGAATTTTTT
* * * * * *
6043745 TATGCATGCCAAAAAAAAGACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCCAAA
378 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
6043810 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCCTGAAAAATAGAAAACGAGTCATC
443 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*** *
6043875 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
508 TTGCCATGAAA---CA---GAAGGCTT-AGGGACCAAAATATGAAGTTA-AAGCC--AAAAAT--
* ** **** * * * * *** * **
6043940 CATTGGCACGTAGAAATCTGA-AGATGTGATTAAACCCACCTACCACCCTATCGAACCACGGCTT
561 CACTACCAC--CCCTATCAGATACATGAGATT------GCCTA-C-CCCT-TC-TTTC-TGGCCG
* * ** * * * * *
6044004 GCGCATCTCGTCTCTTCGACTGGCATAGTGCCCGCCCACCCGTCCGTTTTGTCGGTTGGCTTGGG
613 GCGTA-GT-G-C-C--C-ACCCGC-CA--GCCCGCCCATCCGTTCATTTTGTCGGTTGGCTTAGG
* * *
6044069 CATACTGAGTTCATTCCCAGTCTAAGATCAGATCACATCGAGGGTTGTGGTAGCAGGATCGACAG
668 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCACATCGAGGGTTGTGGCAGCAGGATCGACAG
* * * **
6044134 CACGCAGAGGGGGACCCGGCCGATCCCTGACTTGCGCATCC-CGCCCCTCTGGCCGGCTGAGCGT
733 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTCGCCCCTCTGGCCGGCTGAGCAC
6044198 CCGCACGCTCGTTTCGTGGGTTGACTTAGACATAC---G---------G----A
798 CCGCACGCTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATTCCTGTCTAA
* *
6044236 GC-T-C--A-TTC-TT---AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
* * *
6044292 CTCGGGCATGTGCTGGTGCCGCACTTTTCTTTGCCGGGGCACCATCGTTGGAGCATCGCCGAAGA
66 CTCGAGCATGTGCTGGTGCCGCACTTTTCTTCGCCGGGGCACCATC------G---CGCAG-AGA
* * *
6044357 ACTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGTGGCCGGGGGGTGTGCGCACATGATGTGC
121 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
6044422 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-ATGAACTCAC
186 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCAC
* *
6044486 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
250 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * **
6044551 GGGGACATTTTTTTCAAATGGCCACAAAATCTTCCACACTTCGAGTTTTTAGCTGAA-TTTTTTG
315 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
6044615 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAA
380 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
6044680 ATTTTAAAAAAT-CTGAAACCGTAAAAAGTTTCGAAGATCGTGAAAAATAGAAAACGAGTCGTCT
445 ATTTTAAAAAATCCCG-AACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*** *
6044744 TGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA--A-T
509 TGCCATG-AA-A-CA---GAAGGCTT-AGGGACCAAAATATGAAGTTA-AAGCCA-AAAATCACT
** *** * * * * *
6044806 GGCATTGGC-ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC-GATCCACGG
565 ACCA-CCCCTAT-CAGATACATG-AGAT-TGCCT--A-CC-CCT-----TCTTTCTG--GC-CGG
* * * * *
6044869 CTTGCGCATCCCGCCTCTCTAGCCGACGTAGTTCCCGCCCGCCCTTCCGCCTGCTCATTTCGTCG
614 CGT-AG--T---G-C-C-C-A-CC--C---G--CCAGCCCGCCCATCCG--T--TCATTTTGTCG
* * * * * *** ** *
6044934 GTTGGCTTAGGCATACAGAGTTCATTCTCAGTCTAAGATCAGACCAGACCTATATTTACGGTAGC
657 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCACATCGAGGGTTGTGGCAGC
* * * * *
6044999 AGGATCGACAGCACACAGAGGTGGACTCGACCGATCCCCGGCTTGCACATTC-CGCCCCTCTGGC
722 AGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTCGCCCCTCTGGC
* * * * *
6045063 CGACTAAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
787 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATT-CCTGTCTA
6045128 A
851 A
* * * *** * *
6045129 GCATACAGAGTTCATTCCCAATCTAAGATCGGA-CGAGAGCGAGGGTTACAGCAGCACATGTTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG-GACCGAGGGTTGTGGCAGCACATGCTGG
* * * **
6045193 GCTCGGGCATGTGCTGGTGCTGCA-TTTTTTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAG
65 GCTCGAGCATGTGCTGGTGCCGCACTTTTCTTCGCCGGGGCACCATCG-C---GCA------GAG
* * **
6045257 AACCTGACCGGCGGCATTTGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCTTACATGATG
120 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATG
* * * *
6045322 TGTGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTC
183 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
6045387 ACACCCCCTTATAGAGCATTTGAGATTTTACAG
248 ACACCCCCTTAAAGAGCATTTGAGATTTTACAG
6045420 AGCATTTGAG
Statistics
Matches: 3117, Mismatches: 467, Indels: 419
0.78 0.12 0.10
Matches are distributed among these distances:
845 3 0.00
846 38 0.01
847 318 0.10
848 4 0.00
850 4 0.00
851 9 0.00
852 5 0.00
853 3 0.00
854 27 0.01
855 33 0.01
856 85 0.03
857 166 0.05
858 9 0.00
859 15 0.00
860 8 0.00
861 5 0.00
862 9 0.00
863 10 0.00
864 335 0.11
865 6 0.00
866 126 0.04
867 16 0.01
868 177 0.06
869 24 0.01
870 175 0.06
871 131 0.04
872 11 0.00
873 1 0.00
874 6 0.00
875 4 0.00
876 163 0.05
877 5 0.00
878 3 0.00
879 8 0.00
880 6 0.00
881 1 0.00
882 5 0.00
883 3 0.00
884 2 0.00
886 1 0.00
887 2 0.00
888 4 0.00
889 1 0.00
890 4 0.00
891 267 0.09
892 19 0.01
893 8 0.00
894 2 0.00
895 4 0.00
896 41 0.01
897 162 0.05
898 6 0.00
899 2 0.00
901 61 0.02
902 264 0.08
903 304 0.10
904 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (851 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCACTTTTCTTCGCCGGGGCACCATCGCGCAGAGAACCTGACCGA
CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACA
GAAGGCTTAGGGACCAAAATATGAAGTTAAAGCCAAAAATCACTACCACCCCTATCAGATACATG
AGATTGCCTACCCCTTCTTTCTGGCCGGCGTAGTGCCCACCCGCCAGCCCGCCCATCCGTTCATT
TTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCACATCGAGGGTTGT
GGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTCGCCCC
TCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATTCCT
GTCTAA
Found at i:6043367 original size:26 final size:26
Alignment explanation
Indices: 6043330--6043382 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6043320 GTTGACTTAG
* *
6043330 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
*
6043356 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
6043382 G
1 G
6043383 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGTCTAA
Found at i:6045139 original size:26 final size:26
Alignment explanation
Indices: 6045103--6045155 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6045093 GTTGACTTAG
*
6045103 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
6045129 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
6045155 G
1 G
6045156 ATCGGACGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:6046623 original size:26 final size:26
Alignment explanation
Indices: 6046593--6046645 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6046583 GTTGACTTAG
*
6046593 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6046619 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6046645 G
1 G
6046646 ATTGGACACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:6047202 original size:874 final size:871
Alignment explanation
Indices: 6045428--6047286 Score: 2460
Period size: 874 Copynumber: 2.1 Consensus size: 871
6045418 AGAGCATTTG
* * *
6045428 AGAAATATGAAGATGTGGCTAAACCAACCTACCACCCTATCGATCCATGGCTTGCGTATCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTC
*
6045493 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCTCTCGTTTCGTCGGTTGGCTTAGGCATA
66 TCTCTGGCCGGCGTAGT----GCCCGCCCG--------CTCGTTTCGTCAGTTGGCTTAGGCATA
* * * **
6045558 CGAAGTTCATTCCCAGTCTAAGATTAGACCAGACTGAAGGTTGCTGCAGCAGGATTTGTAGCACG
119 CGAAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAAGGTTGATGCAGCAGGATCGGTAGCACG
* *
6045623 CAAAGAGGGACCCGACCGATCCCGAGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAATGCCCGCA
184 CAAAGAGGGACCCGACCGATCCCGAGCTTGCGCATCCCGCCCCTCTGGTCGACTGAACGCCCGCA
* *
6045688 CGTTCATTTCATGGGTTGACTTAGGCGTACGGAGTTCATTCCTAGTCTAGCATACAGAGTTCATT
249 CGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGCATACAGAGTTCATT
*
6045753 CCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTAG
314 CCCAGTCTAAGATCGAACCA-ACCGAGGGTTACAGCAGCACATGCTGGGCTCGAGCATGTGCTAG
* *
6045818 TACACATTTTTCTCCGTCGGGGCACCATTGTCGGAGCATCACCGGAGAACCTGACCAGAGGCATT
378 TACACATTTTTCTCCGT--------C-TTATCGGAGCATCACCGGAGAACCTGACCAGAGACATT
** * * *
6045883 GGGGTTCCGACGATCGGGGGGGTGTGCGCACGTTATGTGCAATGGGTGCTGGTACGTGGCCCTTA
434 AAGGTTCCAACGATCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACGTGGCCCTTA
* *
6045948 TATTGGCCCCCTATCCCTCATTAAGCCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTT
499 TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTT
*
6046013 TACAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
564 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
6046078 AAATCTTGTACACTTCGAGTTTTTAGCCAAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATC
629 AAATCTTGTACACTTCGAGTTTTTAGCCAAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATC
6046143 ACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGAAAAA
694 ACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGAAAAA
** *
6046208 AGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTCCCATGAAACATCACGTGAAGGCTTA
759 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTCCCATGAAACATCACGTGAAGGCTTA
* *
6046273 AGGGACCATTGTATGACTTTACAAGCCATAAAAATGGCATTGGCACAT
824 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACAT
* * *
6046321 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGTGCATCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTC
* * * **
6046386 CCTTTGGCCGGCGTAGTGCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGTGTTCATTC
66 TCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTC
* * * * * *
6046451 CTAGTCTAAGATCAAACC-G-CGTCGAGGGTT-ATGGCAGCAGGATCGGTAGCATGTAGAGGGGG
131 CCAGTCTAAGATCAAACCAGAC-T-GAAGGTTGAT-GCAGCAGGATCGGTAGCACGCAAAGAGGG
* * * *
6046513 ACCCGGCCGATCCCTG-GCTTGCGCATCCCGCCCCTCTGG-CTGACTGAGCGCCCGTACGCTT-G
193 ACCCGACCGATCCC-GAGCTTGCGCATCCCGCCCCTCTGGTC-GACTGAACGCCCGCACG-TTCA
6046575 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAAGTTCATTCCCA
255 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AGCATACAG-AGTTCATTCCCA
* * * * * *
6046639 GTCTAAGATTGGA-C-ACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
318 GTCTAAGATCGAACCAACCGAGGGTTACAGCAGCACATGCTGGGCTCGAGCATGTGCTAGT-ACA
** * * *
6046702 CA-TTTT-T-C-T-TTATCGGAGCATCGTCGGAGAACCTGACCGGCGACATTAAGGTTCCAACGT
382 CATTTTTCTCCGTCTTATCGGAGCATCACCGGAGAACCTGACCAGAGACATTAAGGTTCCAACGA
* *
6046762 TCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
447 TC------G---GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACGTGGCCCTTATATT
* * * *
6046827 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACG
503 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACA
6046892 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
568 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* ** * * *
6046957 CTTGTACACTTCGAGTTTTTTG-CTGATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGT
633 CTTGTACACTTCGAGTTTTTAGCCAAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGT
* ** * *
6047021 CTACCAATTTTAGG-GCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTC-AACCCGTAAAAAG
698 CTACCAAGTTT-GGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAA-CCGAAAAAAG
* *
6047084 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
761 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTCCCATGAAACATCACGTGAAGGCTTAAG
6047149 GGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGC-T
826 GGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCA--CAT
*
6047196 -GAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCATGGCTTGCGCATCCCGTC
1 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTC
* * *
6047260 TCTCTGGCTGGCATAGTGCTCGCCCGC
66 TCTCTGGCCGGCGTAGTGCCCGCCCGC
6047287 CCGTCCACCT
Statistics
Matches: 858, Mismatches: 86, Indels: 63
0.85 0.09 0.06
Matches are distributed among these distances:
866 43 0.05
872 1 0.00
873 2 0.00
874 272 0.32
875 196 0.23
876 2 0.00
877 1 0.00
878 1 0.00
879 46 0.05
880 8 0.01
881 170 0.20
882 33 0.04
889 9 0.01
893 74 0.09
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (871 bp):
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTC
CCAGTCTAAGATCAAACCAGACTGAAGGTTGATGCAGCAGGATCGGTAGCACGCAAAGAGGGACC
CGACCGATCCCGAGCTTGCGCATCCCGCCCCTCTGGTCGACTGAACGCCCGCACGTTCATTTCAT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGCATACAGAGTTCATTCCCAGTCTAAGA
TCGAACCAACCGAGGGTTACAGCAGCACATGCTGGGCTCGAGCATGTGCTAGTACACATTTTTCT
CCGTCTTATCGGAGCATCACCGGAGAACCTGACCAGAGACATTAAGGTTCCAACGATCGGGGGGG
TGTGCGCACATGATGTGCAATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCCAAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGAGCCA
AAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAAT
AGAAAACGAGTCGTCTTCCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGAATTGGCACAT
Found at i:6048223 original size:26 final size:26
Alignment explanation
Indices: 6048194--6048246 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6048184 GTTGACTTAG
6048194 GCATACGGAGATCATTCCCAGTATAA
1 GCATACGGAGATCATTCCCAGTATAA
* *
6048220 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTATAA
6048246 G
1 G
6048247 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTATAA
Found at i:6050295 original size:26 final size:26
Alignment explanation
Indices: 6050265--6050317 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6050255 GTTGACTTAG
6050265 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
** *
6050291 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6050317 G
1 G
6050318 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6050411 original size:14 final size:14
Alignment explanation
Indices: 6050392--6050420 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
6050382 TTTTCACCCG
6050392 AGGCACCATCGCCA
1 AGGCACCATCGCCA
6050406 AGGCACCATCGCCA
1 AGGCACCATCGCCA
6050420 A
1 A
6050421 AGAACATGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.41, G:0.21, T:0.07
Consensus pattern (14 bp):
AGGCACCATCGCCA
Found at i:6052093 original size:26 final size:26
Alignment explanation
Indices: 6052057--6052109 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6052047 GTTGACTTAG
*
6052057 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTGCCAATCTAA
* *
6052083 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACAGAGTTCATTGCCAATCTAA
6052109 G
1 G
6052110 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTGCCAATCTAA
Found at i:6052978 original size:26 final size:26
Alignment explanation
Indices: 6052948--6053000 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
6052938 GTTGACTTAG
6052948 GCATAC-AGAGTTCATTCCCAATCTAA
1 GCATACGA-AGTTCATTCCCAATCTAA
*
6052974 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
6053000 G
1 G
6053001 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:6053816 original size:26 final size:26
Alignment explanation
Indices: 6053780--6053829 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
6053770 GTTGACTTAG
* *
6053780 GCATACAGAGTTTATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
6053806 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
6053830 CAGATCAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6054548 original size:26 final size:26
Alignment explanation
Indices: 6054511--6054563 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6054501 GTTGACTTAG
6054511 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
6054537 GCATACGTAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
6054563 G
1 G
6054564 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:6055433 original size:26 final size:26
Alignment explanation
Indices: 6055392--6055444 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6055382 GTTGACTTAG
* *
6055392 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTCCATTCCCAGTCTAA
*
6055418 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGAAGTCCATTCCCAGTCTAA
6055444 G
1 G
6055445 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTCCATTCCCAGTCTAA
Found at i:6056253 original size:26 final size:26
Alignment explanation
Indices: 6056217--6056269 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6056207 GTTGACTTAG
* *
6056217 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6056243 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6056269 G
1 G
6056270 ATTTGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6057000 original size:26 final size:26
Alignment explanation
Indices: 6056964--6057013 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
6056954 GGCTTAGTCT
6056964 TACGAAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAGTCTAAGCA
* *
6056990 TACGGAGTTCATTCCTAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
6057014 ATTGGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:6057384 original size:741 final size:741
Alignment explanation
Indices: 6056185--6059693 Score: 4792
Period size: 741 Copynumber: 4.8 Consensus size: 741
6056175 GTCGGCTGAG
* * * * * * * *
6056185 CGCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAAGCATACG
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGTCATACGAAGTTCATTCCCAGTCTAAGCATACG
* * * * *
6056250 GAGTTCATTCCCAGTCTAAGATTTGACTGGACTGAAGGTTGCGGTAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * * *
6056315 ATGTGCTGGTACCGTATTTTTCTTTGCCGAGGCACCATCACTGGAGCATCATCGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCAGGAGCATCGTCGGAGAACCTGAC
* * ** *
6056380 CTGCGGCATTGGGGTTCCGGTGATCGGGGGGGGCTGGGGGGTGGTGTGCGCACATGATGTGCCAT
196 CGGCGGCATTAGGGTTCCGACGATC-GGGGGGGCT-GGGGG-GGTGTGCGCACATGATGTGCGAT
* * ** *
6056445 GGTTGCTGGTACGTGGCCCTTATATTTCCCCCCCATCCCTCATCAAACCTTGAGAACTCACACCC
258 GGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
* *
6056510 CCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGGGTCCGAAATTGG-
323 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCCGAAA-TGGA
*
6056574 GACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
387 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
6056639 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATT
452 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
6056704 TTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCC
517 TTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCC
* * * * *
6056769 ACGAAACGTCACGTGAAAGTTTTAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGCATTG
582 ACGAAACTTCACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
6056834 CCATGGAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGTGCAT
647 CCATGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCGCAT
6056899 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
712 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
*
6056929 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGTCTTACGAAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGTCATACGAAGTTCATTCCCAGTCTAAGCATACG
* * * * *
6056994 GAGTTCATTCCTAGTCTAAGATTGGACCAGACTGAGGGTTGTGGCAGCACATGCAGGGCTCGGGC
66 GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
*
6057059 ATGTGCTAGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCAGGAGCATCGTCGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCAGGAGCATCGTCGGAGAACCTGAC
* *
6057124 CGGCGGCATTAGGGTTCCGACGATCGGGGGGGCTGGGGGGGTGTGTGAACATGATGTGCGATGGG
196 CGGCGGCATTAGGGTTCCGACGATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
6057189 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTT
261 TGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
* * *
6057254 TAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTCCGCAATGGAGACA
326 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCCGAAATGGAGACA
*
6057319 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGC
391 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
6057384 CAAAAAAAATACAGGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAA
456 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
*
6057449 AAAATCCCAAACCGTAAAAAGTTTTCAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCACGA
521 AAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCACGA
* * * * * *
6057514 AACTTCACGTGAAAGTTTTAGGGACCATTGTATGAATTTACAAGCCATAAAAATCGAATTTCCAT
586 AACTTCACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCAT
*
6057579 GGAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCGCATCCCG
651 GCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCGCATCCCG
6057644 TCTCTCTGGCCGGCGTAGTGCCCGCC
716 TCTCTCTGGCCGGCGTAGTGCCCGCC
*
6057670 CGCCCGCCCGCTCG-TTCGGTCGGTTGGCTTAGTCTTACGAAGTTCATTCCCAGTCTAAGCATAC
1 CGCCCGCCCGCTCGTTTC-GTCGGTTGGCTTAGTCATACGAAGTTCATTCCCAGTCTAAGCATAC
* * *
6057734 GGAGTTCATTCCCAGTCTAACATTGGATCGGACCGACGGTTGCGGCAGCACATGCTGGGCTCGGG
65 GGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * *
6057799 CATGTGCTAGTGCCGCAATTTTCTTCGTCGGGGCACCATCGCAGGACCATCGTCGGAGAACCTGA
130 CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCAGGAGCATCGTCGGAGAACCTGA
* * * * *
6057864 CCGACGGCATTGGGGTTCCGACGATCGAGGCGGCTGGGGGGGTGTGTGCACATGATGTGCGATGG
195 CCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGG
* * * *
6057929 GTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACCCCC
260 GTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
* * *
6057994 TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCCGAAATGGAGAC
325 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCCGAAATGGAGAC
*
6058059 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG-ATTTTTTTGTGCATG
390 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* ** **
6058123 CCAACAAAAATACAAGGATCATGTCTACCGGGTTTGGGGCTGAAACTCCTTCCGAAAAAATTTTA
455 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* ** * * * *
6058188 AAAAATCCCGAACCGTAAAAAGTTTCCAAAATCATGAAAATTAGAAAACGAGTCGTCTTGCCATG
520 AAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCACG
* * *
6058253 AAACTTCACATGAAGGCTTAAGGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGC
585 AAACTTCACATGAAAGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCC
* * * * *
6058318 ATGCAGAAATATGAAGATGTTCCTAAACTCACCTACCACCCTATCGATCAACGGCTTGCGCATCT
649 ATGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCGCATCC
*
6058383 CGTCTCTCTCGCCGGCGTAGTGCCCGCC
714 CGTCTCTCTGGCCGGCGTAGTGCCCGCC
6058411 CGCCCGCCCGCTCG-TT--TC-G-T--C--AGT--T--G--G--C-TT---AG-----GCATACG
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGTCATACGAAGTTCATTCCCAGTCTAAGCATACG
* * * * * *
6058450 GAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGGGAGCACTTGC-GGGCCTCGAG
66 GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG-CTCGGG
* * * * *
6058514 CATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATTGCCA-GAGCATCGCCGGACAACCTG
130 CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG-CAGGAGCATCGTCGGAGAACCTG
* * * * * * *
6058578 ACCGGCGACATTTGGGTTTCGACGATCTGGGGGGCCGGAGATGGGTGTGCGCACATGATGTGTGA
194 ACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCTGG-G-GGGGTGTGCGCACATGATGTGCGA
* *
6058643 TGGGTGCTGGTACTTGGCCCTTATTTTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCGCACC
257 TGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
* *
6058708 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAATGGG
322 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCCGAAATGGA
**
6058773 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAAGC
387 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
6058838 ATGCCAA-AAGAAGTACAAGGATCATGACTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAAT
452 ATGCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
6058902 TTTAAAAAAT-CCAGAACCGTAAAAAGTTTTGGAAATCATGAAAAATAGAAAACGAGTCGTCTT-
516 TTTAAAAAATCCCA-AACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTG
* * * *
6058965 ACATGAAACTGCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
580 CCACGAAACTTCACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
6059030 TGGCATGCAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGACTTGCGC
645 TGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCGC
*
6059095 ATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCC
710 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * * * *
6059127 CCCCCGCCCGC-C----C-AC---TCG-TT--TCGT-CG--G----TTCGC--T-TAGGCATACG
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGTCATACGAAGTTCATTCCCAGTCTAAGCATACG
* * ** *
6059170 GAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTTTGGCAGCACATGCTGGGCTCGAGC
66 GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * *
6059235 ATGTACTGGTGCCGTATTTTTCTTCGCTGGGGCACCATCGTC-GGAGCATCGTCGAAGAACTTAA
131 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCG-CAGGAGCATCGTCGGAGAACCTGA
* * * * *
6059299 CCGACGGCGTTAGGGTTCCGGCGATCGGGGGGTCAGGGGGTCGGGGAGGTGTGCGCACATGATGT
195 CCGGCGGCATTAGGGTTCCGACGATC---GGG---GGGGCT-GGGGGGGTGTGCGCACATGATGT
6059364 GCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
253 GCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* **
6059429 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTAAAA
318 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCCGAAA
* * * *
6059494 TGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGATTTTTTTT
383 TGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
6059559 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCTGAAAA
448 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
6059624 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCT
513 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCT
6059689 TGCCA
578 TGCCA
6059694 TGANNNNNNN
Statistics
Matches: 2501, Mismatches: 227, Indels: 92
0.89 0.08 0.03
Matches are distributed among these distances:
712 1 0.00
713 2 0.00
714 3 0.00
715 144 0.06
716 143 0.06
717 219 0.09
718 118 0.05
720 135 0.05
721 3 0.00
723 4 0.00
724 1 0.00
725 317 0.13
726 12 0.00
727 2 0.00
728 1 0.00
730 1 0.00
732 3 0.00
734 1 0.00
736 1 0.00
737 1 0.00
738 2 0.00
740 154 0.06
741 1028 0.41
742 5 0.00
743 9 0.00
744 191 0.08
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (741 bp):
CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGTCATACGAAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCAGGAGCATCGTCGGAGAACCTGAC
CGGCGGCATTAGGGTTCCGACGATCGGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCCGAAATGGAGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
AAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCACGA
AACTTCACATGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCAT
GCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGGCGTAGTGCCCGCC
Found at i:6062058 original size:26 final size:26
Alignment explanation
Indices: 6062029--6062081 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6062019 CCGATCTGAT
6062029 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
6062055 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
6062081 C
1 C
6062082 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:6063520 original size:903 final size:903
Alignment explanation
Indices: 6060704--6072942 Score: 14589
Period size: 902 Copynumber: 13.8 Consensus size: 903
6060694 NNNTTTTTGT
** * * *
6060704 GGTTCGAGATTTTTTAAAATTTTTT-GAGAAAAATTTTTAGCCCCAAACTTGGTAGATGTGATCC
1 GGTTCGAGATTTTTTAAAATTTTTTCG-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * *
6060768 TTGCATTTTTGTTGGCATGCCCAAAAAAAGTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGA
65 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
6060833 CCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
130 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
6060898 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGACGAGGGATAGGGGGCCAATATAAGG
195 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * *
6060963 GTCAAGTACCAGCACCCATCGCACATCATGTGCG-ATCA-CCCCCAGCCCCCCCGATCCTCAGAA
260 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CACCCCCCGGCCCCCCAGATCGTCGGAA
* * * * *
6061026 CCCCAATGCCGCCGATCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCC-GACGAAGAAAAAT
324 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAG-CAAAGAAAAAT
* * * * * *
6061090 GCGGCACCAGCAGATGCCCAAGCCCAGCATGTGCTGGCACAACCCTCGGTCCGGTCCGATCTTAG
388 GAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAG
6061155 ACTGGGAATG-A------A--C-T---CT--G--TG---T--G---G-CTAAGTCAACCCACGAA
453 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * ***
6061194 ACGAGCATCCGGGCGCTCAGCCGGTCAGAGCGATAGGG-TGCGCAAGCCGGGGGATCGGTCGGGT
518 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAG-GGGCGGGATGCGCAAGCC-GGGGATCGGTCGGGT
* * * * * * *
6061258 CCCCCTCTGTGTGCTGCCAATCCTGCTGCCACAACCCTCAGTCTAGTTTGATCTTAGACTTGGAA
581 CCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAA
* **
6061323 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGAGCGGACGGGCGGGCGGGCAAGCACTA
646 TGAACTCCGTATGCCTAAGCCAACCGACGAAAC----GAGCGGGCGGGCGGGCGGGCGGGCACTA
* *
6061388 CGTCGGCCAGAGAAACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
707 CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
** * *
6061453 TCTTCATATTTCTATGTGCCAATGCGATTTTTATGGCTTGTAAAATCATACAATGGTTCC-TTAA
772 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG-TCCGTTAA
**
6061517 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
836 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
**
6061582 TGT
901 TAC
* * * *
6061585 GGTTCGGGATTTTTTAAAATTTTTTCAGAA-AATTTTTGGCCCCAAACTTGGTAGACGTGATCCT
1 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
6061649 TGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
66 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
6061714 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
131 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* **
6061779 CAAATGCTCTTTACGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGACCCAATATAAGGG
196 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * * **
6061844 CCAAGTACCAGCACGCATCACACATCATGTGCACACACCCCCCGG-CCCCC-TATCACCGGAACC
261 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAGATCGTCGGAACC
** * ** * * *
6061907 CCAATGCCACCGATCAGGTTCTCCGGTGATGCTCCGACAATGGTGCCCC-GACGAAGAAAAATGC
326 CCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAG-CAAAGAAAAATGA
* * * * * * * * *
6061971 GACACTAGCACAGGCCTGAGCCCAGGATGTGCTACCGCAACCCTCGGTCCGATCTGATCTTAGAC
390 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGAC
* * *
6062036 TAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAAC
455 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * *
6062101 GAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCAGTCGGGTCCCC
520 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
* ** *
6062166 CTCTACGTGCTACCGATCCTGCTATCGTAA--CTCGAGT-TGGT-TCGATCTTAGACTGGGAATG
585 CTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTC-AGTCTGGTCT-GATCTTAGACTGGGAATG
* * * *
6062227 AACTCCGTATGCCTAAG-CAACCAACGAAACCAGCGGGCGGGTGGGCGGGCAGGCGGGCATTACG
648 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC----GGGCGGGCGGGCGGGCACTACG
** * * * *
6062291 TCGGCTGGAGAGATGGGATGCGCAAGCCGTGCATCGATAGGGTGGTTGGTGGGTTTATGCACATC
709 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
** * *
6062356 TTCATATTTCACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
774 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCC
* *
6062421 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAA-TTTTTG
839 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCAAAACTTTTTA
*
6062485 T
903 C
* * * * *
6062486 GGTTC-AGGAGTTTTTAAACATTTTTT-GGAAGGATTTTTGGCGCCAAACTTGGCAGACATGATC
1 GGTTCGA-GATTTTTTAAA-ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
6062549 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
64 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
6062614 ACCATTTCAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
129 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
6062679 CTCAATTGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
194 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* ** *
6062744 GGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCAGATCACCGAA
259 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCAGATCGTCGGA
* * *
6062809 ACCCCAATGCCGTCGGCCAGGTCCTCTGACGATGCTCCGACGATGGTGCCCCAGCAAAGAAAAAT
323 ACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGCAAAGAAAAAT
* * * * * *
6062874 GAGGCACCAGCACATGCCCAAGCCCAGCATGTGTTGTCACAACCATCGGTCTGGTCCGATCTTCG
388 GAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAG
*
6062939 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAA
453 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * ** *
6063004 ACGAGCGTACGGGTGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCCATGGATTGGTCGGGTCC
518 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCC
* **
6063069 CCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGATCCAATCTTAGACTGGGAATG
583 CCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATG
* * * *
6063134 AACTCCGTATGCCTAAGCCAACCGTCGAAACGAGCGGGCGGGCCGACGGGCGGGCACTACGCCGG
648 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGG
* * * * * *
6063199 TCAGAGAGAAGGGATACGTAAGCCGTGGATCGATAGGGTGATTGGTGGGTTTA-GCACATCTTCA
713 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * * *
6063263 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGGAAATTCATATAATTGTCCGTTAAGCCTTCA
778 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCA
*
6063328 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGC
843 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
* *
6063389 GGTTTGAGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCT
1 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
*
6063454 TGTATTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
66 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * * *
6063519 CATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTATTGGCAGCAAAACTGTAAAATCG
131 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
*
6063584 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
196 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
6063649 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCC-GCCCCCC-CATCGTCGGAACC
261 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAGATCGTCGGAACC
* * * * ** *
6063712 CCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCGGTGAAGAAAAATGCG
326 CCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGCAAAGAAAAATGAG
* * *
6063777 GCACCAGCACATGCCCGAGCCCAACATGTGCTGCCAC-AGCC-C--TC--G---G---TT---C-
391 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACT
* * * *
6063826 --G---G---TCCG-A-GCTTAGACTAGGAATGAACTCGGTATGCCTAAGTCCACCCACGAAACA
456 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* ** * * * ** *
6063881 AGCGTACGGATGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGTCAAGGATCGGTCGGGTACCCC
521 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
* * * *
6063946 TCTGCATGCTATCGATCCTGCTGCCGCAACCCTCGGTCCT-GTCTGATCTTAGACTGAGAATGAA
586 TCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGT-CTGGTCTGATCTTAGACTGGGAATGAA
**
6064010 CTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCGGGCGGGCACTACACCGGCC
650 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCC
* * *
6064071 AGAGAGACGGTATGCGCAAGCCATCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
715 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * * * *
6064136 TTTCGGTGTGCCAATGCCATTTTTATGGCTTGTCAATTCATACAATGGACCTTTAAGCCTTCACG
780 TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCACG
* * *
6064201 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAACCATTTTAC
845 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
* * ** *
6064260 AGTTC-AGAATTTTTTTAAATTTTTTCGGAAGGTTTTTTTGCCCCAAAC-T--TAGACGTGATCC
1 GGTTCGAG-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
6064321 TTAT-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
65 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
6064385 CCATTTGAAAAAAGTGTCCCCATTTC-GAACACTTTATTGGCCACTGGCAGCAAACCTGTAAAAT
130 CCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
6064449 CTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGCCCAATATAAG
194 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * * * **
6064514 GGCCAAGTACCAGCACCTATCGTACATCATGTGCGCACACCCCCTGGCCCCCCCGATCGCCAAAA
259 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAGATCGTCGGAA
* * * * **
6064579 CCCCAATACCGTCGGTCAGGTTCTTCGACGATGCTTCGACGATGGTGCCCCGGTGAAGAAAAATG
324 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGCAAAGAAAAATG
* * * *
6064644 CGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCATAGA
389 AGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGA
* *
6064709 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCAACGAAA
454 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * **
6064774 TGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGCCGCGGATCGACCGGGTCCC
519 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
* * *
6064839 CCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCA-TCCGGTCTGATCTTAGACTGGGAATGA
584 CCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGA
* * *
6064903 ACTCCGTATGCCTAAGCCAACCGTCG-AACGAGCGGGCGGGTGGGCGGGCGGGCACTACGCCGGC
649 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGC
*
6064967 CAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
714 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *
6065032 ATTTTCTGTGTGCCAATGCCATTTTTATGGCTTGTCAATTCATACAATGGTCCGTTAAGCCTTCA
779 A-TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCA
* **
6065097 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
843 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
*
6065158 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGTG-TTTGGCCCCAAACTTGGTAGACGTGATCCT
1 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
** * *
6065222 TGTATTTTTGTTGGCATGCACAAAAAAATTTTGCTAATAACTTGAAGTGTACAAGATTTTGTGAC
66 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
*
6065287 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAGGGCTACTGGCAGCAAACCTGTAAAATCT
131 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * *
6065352 CAAATGCTCTTTACGCGAGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
196 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
6065417 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAGATCGTCGGAACC
261 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAGATCGTCGGAACC
* * * * * *
6065482 CCAATGTCGCCGGCCAAGTTCTCCGACGATGCTCCGACGATGGCGCCCTAGCAAAGAAAAAT-AC
326 CCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGCAAAGAAAAATGA-
* *
6065546 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGGAA--C-C---C---T-CG--C-T---C
390 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGAC
* * *
6065595 T--G---G---TCCG-AT-CTTAGACTGCGAATGAACTCTGTATGCCTAAG-CAACCAACGAAAC
455 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * *
6065649 GAGGGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGTGGATCGGTCGGGTCCCC
520 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
* ** *
6065714 CTCTGCGTGCTACTGATCCTATTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAA
585 CTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAA
**
6065779 CTCCGTATTACTAAGCCAACC-ATCGAAACGAGCGGGCGGGCGGGCGGGCGAGCGGGCACTACGT
650 CTCCGTATGCCTAAGCCAACCGA-CGAAACGAGCGGGCGGGCGGGC--G-G-GCGGGCACTACGT
*
6065843 CGGCCAG-GAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
710 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
6065907 TCATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGGAAATTCAT---ATGGTCCGTTAAGCCT
775 TCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCT
* * * *
6065969 TCACGTGAAGTTTCATGGCAAGATGACTCGTTCTCTATTTTTAACGATTTTCAAAACTTATT-C
840 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
* * * ** * *
6066032 GGTTC-AGGATTTTTTAAAATTTTTTTGGTAGGACTTTTACCCCCAAGCTTGGTAGATGTGATCC
1 GGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
6066096 TTGTA--TTTGTTGGAATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
65 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
6066159 CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATC
130 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
6066224 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
195 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * *
6066289 GCCAAGCACCCGCGCCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCA-ATCGCCGGAA
260 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCCAGATCGTCGGAA
** * * *
6066353 CCCCAATGCCACCGGTCAGGTTTTCCGACGATGCTCCGGCGATGGTGCCCC-G--ACG----A--
324 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGCAAAGAAAAATG
* *
6066409 A-G-A--A--ACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGT-TCGATCCGATCTTAG
389 AGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAG
* * *
6066467 ACTGGGAATGAACTCCATATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCCACCCACGAA
453 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * *
6066532 ACAAGCGTACGGACGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGTCGGGGATCGGTCGGGTCC
518 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCC
* * * * * *
6066597 CCCTCTGCATGCTATCGATCCTGCTGCCGTAACCCTC-GATCCT-GTATGATCTTAGATTGAGAA
583 CCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAG-T-CTGGTCTGATCTTAGACTGGGAA
* * **
6066660 TGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGAGCGGGCGGGCGGGCGGGCACTACACC
646 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTC
*
6066725 GGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
711 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
6066790 CATATTT-TGGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCT
776 CATATTTCT-GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCT
*
6066854 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTAC
840 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
* * * *
6066918 GTTTCAAAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCGAAACTTGGTAGACGTGATCCT
1 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * * *
6066983 TATATTTTTATTGGCATGCAAAAAAAAAAATT-ATACTAAAAAGCTCGAAGTGTACAAGATTTTG
66 TGTATTTTTGTTGGCATGC--ACAAAAAAATTCA-GCTAAAAA-CTCGAAGTGTACAAGATTTTG
*
6067047 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
127 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
6067112 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
192 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * *
6067177 AGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACGCCTCGGCCCCCCCGATCGTCAG
257 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAGATCGTCGG
* * * * *
6067242 AACCCTAATGTCGTCGGTCAGGTTCTCAGATGATGCTCCGACGATGGTGCCCC-GACGAAGAAAA
322 AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAG-CAAAGAAAA
* * * * * * **
6067306 ATGCA-GCACCAGCCCATGCCTGAGCCCAGCATGTGCTGTCGAAACCTTCAGTCCAGTCCGATCT
386 ATG-AGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCT
* * ** *
6067370 TAGATTGGGAATGAAATTTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
450 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* ** * * * **
6067435 GAATCGAGCGTGCAAGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTCGGGGATCAATCGGG
515 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGG
* * * *
6067500 TCCCCCTCTGCGTGCT-CCAAATCCTGCTACCGCAACCCTC-GTCCGATCTGATCTTAGACTGGG
580 TCCCCCTCTGCGTGCTACC-GATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGG
* **
6067563 AATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCGGGCGGGCGGGCACTACG
644 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACG
* *
6067628 TCGGCCAGAGAGACGAGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
709 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
6067693 TTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
774 -TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGC
* * **
6067758 CTTCACGTGAAG-TT-A--G--A-A-GACTCGTTATCTATTTTTCATGATTTTTGAAACTTTTTA
838 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTA
6067815 C
903 C
* * * *
6067816 AGTTC-AGGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGCTCCAAACTTGGTAGACATGATCC
1 GGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
6067880 TTGTA-TTTTGTTGGCAGGCGCAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGA
65 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
6067944 GCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACATACCTGTAAAATC
130 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * ** * * *
6068009 TCAAATGCACTTTACGGGGGTATGAGTTCTTAAGGTTTGATGAGCGATAAGGGGCCAATTTAAGG
195 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
6068074 GCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCAGATCGTCGAAAC
260 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAGATCGTCGGAAC
* * *
6068138 CCCAATGCTG-CTGGTCAGG-T-T----C--T-CT--GACGATGGTG-CCCTGACGAAGAAAAAT
325 CCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAG-CAAAGAAAAAT
* * *
6068190 GTGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCACAA-CC-C--T-T-G---G---TT--
388 GAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAG
* *
6068241 -C---G---G---TCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
453 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* *
6068294 ACGAGCGTGCGGGCGCTC-GTTCGACCAGA-GGGCGGGATGCGCAA------G--C---CGGGTC
518 ACGAGCGTGCGGGCGCTCAG-CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * ** * * *
6068346 CCCCTCTGCGTGCTGCCGATCCTGCTGCCGTAACCCTTGGTCCGGTCCGATCTTAGACTGGTAAT
582 CCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAAT
* * *
6068411 GAACTCCATATGCCTAAGCCAACCGAC-AAA--A-CAGGCGGGCGGGCGGGCAGGCACTACGTCG
647 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCG
* * *
6068472 GCCAGAGATACGGGATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
712 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * *
6068537 ACATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCTC-TTAAGACTT
777 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC-CGTTAAGCCTT
* *
6068601 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTAC
841 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
* * * * **
6068664 GGTTCGAGATTTTTTTGAAATTTTTTCAGAA-AATGTTTTGGTCCCAAACTTTTTAGACGTGATC
1 GGTTCGAGA-TTTTTTAAAATTTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATC
* * ** * *
6068728 CTTGCATTTTTGTTGGCATGCACAAAAACATTCAGAGAAAAACTCGAACTAATACAAGCATTTTG
64 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT-GTACAAG-ATTTTG
** * * *
6068793 TGACCGCATCAGAAAAAAGTTGTCCCTATTTCCAG--ACTTTAATGGCTACT-ACAGCAAACTTG
127 TGA-C-CATTTGAAAAAAG-TGTCCCCATTT-CAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
6068855 -ATAAATCTCAAAAT-CTC-TTAAGGGGGTGTGAGTTCT-GAGCGGTTGAATGAGGGATA-GGGG
188 TA-AAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG-GTTTG-ATGAGGGATAGGGGG
* * * * *
6068915 CCAATA-AAGGGGCCCCAAGCACCAGCCACTATTCATCACAAATCATGTGCGCTACACACCCCGG
249 CCAATATAA-GGG--CCAAGTACCAG-CAC---CCATCGCACATCATGTGCGC-ACACCCCCCGG
* * * * * **
6068979 TTCCTCTCAGATCCGGTTAC-GAA--CCAATACCGT-GATCAGGTTCTCCGGC-ATGCT-CGGGG
306 --CCCCCCAGAT-C-G-T-CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACG
* * * * * *
6069038 ATGGTG-CCGA-CGAAGAAAAATGTGGCACCATTAG-ACATGCCTGAG-CTAGCAATGTGCTACC
365 ATGGTGCCCCAGCAAAGAAAAATGAGGCACC---AGCACATGCCCGAGCCCAGC-ATGTGCTGCC
*
6069099 GCAACCCTCGGTC-GGTCCGATCTTAAGACTGGGAATGAACT-CATATGCTTAGAC-GGGAATGA
426 GCAACCCTCGGTCTGGTCCGATCTT-AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* *
6069161 ACT-CGTATGGCCTAAGTCAACCCCACGAAAC-AGCGTGCGGGCAATGCGCTCAGTCGG-TAGAG
490 ACTCCGTAT-GCCTAAGTCAA-CCCACGAAACGAGCGTGC-GG----GCGCTCAGCCGGCCAGAG
* *** * * *
6069223 GGGCGGGATGCGCAAGTCGGGGATCAACCGGGTCCCCCTCCGCGTGCTACCGATCCTGTTACCGC
548 GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGC
* * *
6069288 AA--CTC-GATTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
613 AACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
6069350 ACTA--------GCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCATGGA
677 ACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * *
6069407 TCGATAGGGTGGTTGGTGGGTTTAGGCACATGTTCATATTTTTGCCTGCCAATGCCATTTTTATG
742 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
* * *
6069472 GCTTGTAAATTCATACAATGGTCCAG-TAAGGCTTCACGTGCAGTTTCATGGAAAGACGACTCGT
807 GCTTGTAAATTCATACAATGGTCC-GTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
**
6069536 TTTCTATTTTTCACGATTTTTGAAACTTTTTAC
871 TTTCTATTTTTCACGATTTTCAAAACTTTTTAC
* * * **
6069569 GGTTCGGGATTTTTTAAACTTTTTTTGGAAGGAGTTTTGGTGCCAAACTTGGTAGACGTGATCCT
1 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
** * * *
6069634 TGTATTTTTGTTGGCATGCTTAAAAAAATTCAGCTACAAACTGGAAGTGTATAAGATTTTGTGAC
66 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * * * *
6069699 CATTAGAAAAAAGTATCCCCA-TTCTAAACACTTTAATGGCTACAGGCAACAAACCTGTAAAATC
131 CATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * * * *
6069763 TCATATGCTCTTTAAGGGAGCGTGTGTTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGG
195 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
*
6069828 G-CAAGAACC-GACACCCATCGCACATCATGTGCGCACAGCCCCCCCGGCCCCCCAGATCGTCGG
260 GCCAAGTACCAG-CACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCAGATCGTCGG
* ** **
6069891 AACACCAATGCCGTCGACCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAGCAAAGAAAAA
322 AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGCAAAGAAAAA
* * * * * * * * *
6069956 T-ACAGCACCAGCACATGCCCGAGCTCAGCATGTGCTACTGTAACCCTCAGTTTGATCTGATCTT
387 TGA-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTT
* * *
6070020 AGATTGAGAATGAACTCCGTATGCTTAGA-TAGGGAATGAACTCCGTATGCCTAAGTCAACCAAC
451 AGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * * *
6070084 GAAACGAGCGTACGGGCGTTCAGCCGGCCAAAAGGGCGGGATGCGTAAGCCGTGGATCGGCCGAG
515 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGG
* * * * *
6070149 TCCCCCTCTGTGTGCTACTGATCTTGCTGCCGCAACCCTCAGTCCGGT-TCGATCTTAGACTAGG
580 TCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCT-GATCTTAGACTGGG
** ** * * *
6070213 AATGAACTCTATATGCCTAAGCCAACCGTTGAAATGAGCGGGCGGGCGGACGGGCGGGCACTATG
644 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACG
**
6070278 TCGGCCAGAGAGACGGGAAT-CATAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
709 TCGGCCAGAGAGACGGG-ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
6070342 CTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGGAAATTCATACAATGGTCCGTTAAGC
773 CTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGC
* * * * *
6070407 GTTCACGTGAAGTTTCATGGCGAGACGACTCATTTTTTATTTTTCACGATTTTCAAAACTTTTTT
838 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTA
6070472 C
903 C
* *
6070473 GATTCGAGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCT
1 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
6070538 TGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACT-GAGGTGTACAAGATTTTGTGAC
66 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * *
6070602 CATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTATTGCCAGCAAACCTGTAAAATCT
131 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * *
6070667 CAAATGCTCTTTAAGGGGGAGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATACAAGGG
196 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
** * * * * * *
6070732 CCAACCACTAGTACCCATCGCACATCATGTTCGCACACCCCCCGTCCCCCTC-GATCATCGAAAC
261 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CAGATCGTCGGAAC
* * * *
6070796 CCCAATGCCATCGATCAGGTTCTCCGATGATGCTCC-AGCGATGGTG-CCCTGACAAAGAAAAAT
325 CCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCAG-CAAAGAAAAAT
* * * ** * * * * * *
6070859 -ACGGCACCAGCACATGCTCGAGTCCAACATGTGCCACCGTAACCGTCGATTTGTTCTGATCTTA
388 GA-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTA
* *
6070923 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGT
452 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * *
6070988 AACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCTCAAGCCGAGGATCGGCCGGGTG
517 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTC
* ** * ** *** ** * * *
6071053 CCCTTCTATGTGCTGCTTATCCTGCTTTTGTGACCCTCAATCTGGTTTGATCTGAGACTGGCG-A
582 CCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGG-GAA
* * * * * * * * * *
6071117 TGAACTCTGTATGCTTAAGCCAACCGACGAAACGAGAGAGCGGGTGCGCGGACCGGCACTATGCC
646 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTC
* * * *
6071182 TGCCAAAGAGATGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTT
711 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
6071247 CATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC-TCTAAGCCT
776 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGT-TAAGCCT
* * * *
6071311 TCACGTGAAGTTTCATGGCAAGTCGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTAG
840 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
* *
6071375 GGTTCGGGATTTTTTAAAAATTTTTT-GGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGATCC
1 GGTTCGAGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
6071439 TTGTATTTTTGTTGGCATGCACAAAAAGATTTAGCTAAAAACTCGAAGTGTACAACATTTTGTGA
65 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
6071504 CCATTTGAAAAAAGTCTCCCCATTTCAAACACTTTAATGGATACTGGCAGCAAACCTGTAAAATC
130 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
6071569 TCAAATGCTCTTCTAA-GGGGTGTGAGTTGTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAG
195 TCAAATGCTCTT-TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
6071633 GGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACA-CCCCCGACCCCCC-CATCGTCGGAA
259 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAGATCGTCGGAA
* * *
6071696 CCCCAATGCCGTCGGACAGGTTCTCCGACGATGCGCCGGCGATGGTGCCCCAGCAAAGAAAAATG
324 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGCAAAGAAAAATG
* * * * * *** *
6071761 CGTCACTAGCACATGCCCGAGCCCAACATGTGCTGTCGCAACCCTCGGTAAAGTCCGATCTTACA
389 AGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGA
* * * *
6071826 CTGGGAATCATCTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAA
454 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * *
6071891 CGAGCGT-AGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCAC-AGCCAGGGATCGATCGGGTCCC
519 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
* *** * * * *
6071954 CCTCTGTGTGCTGTTGATCCTCCTGCTGCAACCCTCGGT-TCGGTCTGATCTTAGACTAGGAATG
584 CCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATG
* * * * * *
6072018 AACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGACGGGCGGGTGAGCAGGCACTACGTCGG
648 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGG
* *
6072083 CCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTA
713 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
6072148 TATTTCTTCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC-TTAAGCCTTCA
778 TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCA
* * * * **
6072212 CGTGGAGGTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTTTGAAACTTTTTAC
843 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCAAAACTTTTTAC
* * *
6072274 GGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACATGGTAGATGTGATCCT
1 GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
6072339 TGTATTTTTGTTGGCGTGCA-TAAAAAATTCAGGTAAAAAC-CTGAAGTGTACAAGATTTTGTGA
66 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-GAAGTGTACAAGATTTTGTGA
*
6072402 CCATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT-AAATC
130 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
6072466 TCAAATGGCTCTTTAAGGGGGTGTGAGTTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAA
195 TCAAAT-GCTCTTTAAGGGGGTGTGAG-TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
6072531 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGTTCG-CAGG
258 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAGATCGTC-GG
* *
6072595 AACCCCAATTCCGTCGGTCAGGTTCTCTGACGATGCT-C--C------G----A-CAAAGAAAAA
322 AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGCAAAGAAAAA
** * * * **
6072646 TGCA-GCACCAGCACATGCTTGAGCCCAGCATGTGCTGTCGCAACCATTGGTCCAGTCCGATCTT
387 TG-AGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTT
* * *
6072710 AGACTGGGAATGAACTCCATATGCTTACACTGGGAATGAACTCCAG-ATCCCTAAGTCAACCCAC
451 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC-GTATGCCTAAGTCAACCCAC
* * * * * * * *
6072774 AAAACGAGCGTGCGGGCACTCAGCCAGCCAGAGGGGCGGGACGTGCAAGCTGGGGATCGGCCTGG
515 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGG
* * * ** * *
6072839 TCCCCTTCTGCATGCTGCCGATCCTGCTGTAGCAACCCTC-GATCCGATCTGATCTTAGACTGGG
580 TCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGG
* * *
6072903 AATGAACTCCGTATGCCTAAACCAACCGATGAAATGAGCG
644 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
6072943 CTCAGCACAT
Statistics
Matches: 9840, Mismatches: 1153, Indels: 722
0.84 0.10 0.06
Matches are distributed among these distances:
840 71 0.01
841 90 0.01
842 2 0.00
844 41 0.00
845 50 0.01
846 1 0.00
847 2 0.00
848 45 0.00
849 50 0.01
850 36 0.00
851 10 0.00
852 43 0.00
853 26 0.00
854 41 0.00
855 28 0.00
856 66 0.01
857 2 0.00
858 46 0.00
859 10 0.00
860 2 0.00
861 2 0.00
862 14 0.00
863 10 0.00
864 3 0.00
865 4 0.00
866 2 0.00
867 218 0.02
868 25 0.00
869 122 0.01
870 85 0.01
871 197 0.02
872 5 0.00
873 276 0.03
874 322 0.03
875 186 0.02
876 27 0.00
877 4 0.00
878 40 0.00
879 195 0.02
880 275 0.03
881 57 0.01
882 161 0.02
883 4 0.00
884 33 0.00
885 234 0.02
886 61 0.01
887 131 0.01
888 45 0.00
889 102 0.01
890 25 0.00
891 251 0.03
892 8 0.00
893 59 0.01
894 324 0.03
895 197 0.02
896 134 0.01
897 174 0.02
898 461 0.05
899 406 0.04
900 212 0.02
901 795 0.08
902 982 0.10
903 726 0.07
904 523 0.05
905 650 0.07
906 263 0.03
907 41 0.00
908 20 0.00
909 49 0.00
910 3 0.00
911 34 0.00
912 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (903 bp):
GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAGATCGTCGGAACC
CCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAGCAAAGAAAAATGAG
GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
TCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCA
GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
Found at i:6064741 original size:26 final size:26
Alignment explanation
Indices: 6064705--6064755 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
6064695 GGTCTGATCA
6064705 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
6064731 TAGACTGGGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
6064756 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:6066502 original size:26 final size:26
Alignment explanation
Indices: 6066462--6066514 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6066452 TCGATCCGAT
*
6066462 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
*
6066488 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
6066514 C
1 C
6066515 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:6067404 original size:26 final size:26
Alignment explanation
Indices: 6067368--6067420 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6067358 CCAGTCCGAT
* *
6067368 CTTAGATTGGGAATGAAATTTGTATG
1 CTTAGACTGGGAATGAAATCTGTATG
*
6067394 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAAATCTGTATG
6067420 C
1 C
6067421 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.11, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCTGTATG
Found at i:6070056 original size:26 final size:26
Alignment explanation
Indices: 6070017--6070069 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6070007 TTGATCTGAT
*
6070017 CTTAGATTGAGAATGAACTCCGTATG
1 CTTAGATAGAGAATGAACTCCGTATG
*
6070043 CTTAGATAGGGAATGAACTCCGTATG
1 CTTAGATAGAGAATGAACTCCGTATG
6070069 C
1 C
6070070 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGATAGAGAATGAACTCCGTATG
Found at i:6070955 original size:26 final size:26
Alignment explanation
Indices: 6070919--6070971 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6070909 TTGTTCTGAT
6070919 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6070945 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6070971 C
1 C
6070972 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:6071849 original size:26 final size:26
Alignment explanation
Indices: 6071820--6071872 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
6071810 AAAGTCCGAT
*
6071820 CTTACACTGGGAATCATCTCCGTATG
1 CTTACACTGGGAATCAACTCCGTATG
* * *
6071846 CTTAGATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATCAACTCCGTATG
6071872 C
1 C
6071873 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATCAACTCCGTATG
Found at i:6075123 original size:718 final size:710
Alignment explanation
Indices: 6073697--6075166 Score: 2076
Period size: 718 Copynumber: 2.1 Consensus size: 710
6073687 ATCCGGTCAG
* *
6073697 ATCTTAGACTGGGAATGAACTCCATATGTCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* * *
6073762 CTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATCGGGTGGTAGGTGGGTTTAGGC
66 CTACACCGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
6073827 ACATCTTCATATTTCTACAAGCGAATACCATTTTTCTGGCCTGTAAATTCATGCAATGGTCCCTT
131 ACATATTCATATTTCTACAAGCCAATACCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTT
* **
6073892 AAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
**
6073957 TTTACAGATCGGGATTTTTTAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
261 TTTACAGATCAAGATTTTTTAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
*
6074022 ATCCTTGTATTTTTGTTGGCATGCCCAAAAAAAAAATCAGCTGAAAACTCGAAGTGTACAAGATT
326 ATCCTTGTATTTTTGTTGGCATG-CCAAAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATT
* *
6074087 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATGGCTATTGGCAGAAACCTGTA
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAACGGCTACTGGCAGAAACCTGTA
* *
6074152 AAATCTCAAATGTTCTTTAAGGGGGGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACAT
455 AAATCTCAAATGTTCTTTAAGGGGGGTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAACAT
* *
6074217 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTTTGCACACGCCCCCCGACACCCTCGATCAC
520 AAGGGCCAAGTACCAGCACCCATCGCACATCATG-TTGCACACACCCCCCGACACCCCCGATCAC
* * ** *
6074282 CGGAACCCTAATGCCACCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACAAAGAA
584 CGGAACCCTAATACCACCGGTCAGGTCCTCTAACGATGCTCCGACGATGGAGCCCCGACAAAGAA
* * * * ** *
6074347 AAATACGGCACCAGCACATGCTCGAGGCCAGCATGTGGTGTGGCAACTCTCGGTCCAGTCCA
649 AAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGACGCAACCCTCGGTCCAGTCCA
*
6074409 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATAAGCGGGCAGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-C--G-A-GCGGGCG
* *
6074474 GGCGGGCACTACGCCGGTCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGG
58 GGCGGGCACTACACCGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGG
* * *** * *
6074539 GTTTAGGTACATATTCATATTTCTGCCTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
123 GTTTAGGCACATATTCATATTTCTACAAGCCAATACCATTTTTATGGCCTGTAAATTCATACAAT
*
6074604 GGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTC-TTTT-TATTTTTCACGATTTT
188 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* *
6074667 CAAAACTTTTTACGGTTCAAGATTTTTTAAAGTTTTTTT-GGAAGGAGTTTTGGCCCCAAACTTG
253 CAAAACTTTTTACAGATCAAGATTTTTTAAA-TTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * *
6074731 GTAGACGTGATCCTTGTATTTTTTTTGGCATG-CACAAAAAAATTCAGCTAAAAACTCGAAGTGT
317 GTAGACATGATCCTTGTATTTTTGTTGGCATGCCAAAAAAAAAATCAGCTAAAAACTCGAAGTGT
*
6074795 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAGCGATGCT-CTGGC
382 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAA-CG--GCTACTGGC
*
6074859 AGCAAACCTGTAAAATCTCAAATGCTT-TTTAAGGGGGTGTGAGTTCTCAAGGTTTGGTGAGGGA
444 AG-AAACCTGTAAAATCTCAAATG-TTCTTTAAGGGGG-GTGAGTTCTCAAGGTTTGATGAGGGA
* * * * *
6074923 TAGGAGGCCAATATAAGGGCCATGTACC-GACACCCATCGGACGTCATG-TGCGCACACCCCCCG
506 TAGGAGGCCAACATAAGGGCCAAGTACCAG-CACCCATCGCACATCATGTTGCACACACCCCCCG
* * *
6074986 GCCCCCCCGATCACCGGAACCCTAATACCATCGGTCAGGTCCT-TAAACGATGCTCCGACGATGG
570 ACACCCCCGATCACCGGAACCCTAATACCACCGGTCAGGTCCTCT-AACGATGCTCCGACGATGG
* * * **
6075050 AGCCCTGGCGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGACGCAACCCT
634 AGCCCCGACAAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGACGCAACCCT
* *
6075115 TGGTCCAGTCCG
699 CGGTCCAGTCCA
* * *
6075127 ATCTTAGACTGGGAATGAACTCTGTTTGCCTAAGTCAACC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
6075167 CATTAAACGA
Statistics
Matches: 671, Mismatches: 70, Indels: 28
0.87 0.09 0.04
Matches are distributed among these distances:
712 41 0.06
714 1 0.00
715 2 0.00
716 80 0.12
717 2 0.00
718 269 0.40
719 47 0.07
720 229 0.34
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (710 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
CTACACCGGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATATTCATATTTCTACAAGCCAATACCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
TTTACAGATCAAGATTTTTTAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATG
ATCCTTGTATTTTTGTTGGCATGCCAAAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAACGGCTACTGGCAGAAACCTGTAA
AATCTCAAATGTTCTTTAAGGGGGGTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAACATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTTGCACACACCCCCCGACACCCCCGATCACCG
GAACCCTAATACCACCGGTCAGGTCCTCTAACGATGCTCCGACGATGGAGCCCCGACAAAGAAAA
ATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGACGCAACCCTCGGTCCAGTCCA
Found at i:6076016 original size:26 final size:26
Alignment explanation
Indices: 6075987--6076039 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
6075977 CTGGTCCGAT
6075987 CTTAGACTCG-GAATAAACTCCGTATG
1 CTTAGACT-GAGAATAAACTCCGTATG
*
6076013 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATAAACTCCGTATG
6076039 C
1 C
6076040 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATAAACTCCGTATG
Found at i:6076929 original size:26 final size:26
Alignment explanation
Indices: 6076893--6076943 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
6076883 GGTCCGATCA
* *
6076893 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTAGGAATAAACTCCATATGCT
*
6076919 TAGACTAGGAATAAACTCCGTATGC
1 TAGACTAGGAATAAACTCCATATGC
6076944 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATAAACTCCATATGCT
Found at i:6077492 original size:900 final size:890
Alignment explanation
Indices: 6075328--6080366 Score: 6150
Period size: 900 Copynumber: 5.8 Consensus size: 890
6075318 CAGGCGGGCG
* * *
6075328 GGCGGGCGAGCACTACGCCGGCCAAAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
1 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
6075393 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGACTTGTAAATTCATA
66 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * * *
6075458 CAACGGACCCTTAAGCCTTCACGTGAAGTTTCACGACAAGACGACTCATTTTCTATTTTTCACGA
131 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
6075523 TTTTCAAAACTTTTTACGGTTCGGGATTTTGTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
196 TTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
6075588 TTGGTAGACACGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAACTAAAAACTCGAAGT
261 TTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
6075653 GTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCTCATTTCAGACACTTTAATGTCTACTGGCA
326 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
6075718 GCAAACCTGTAAAATC-CTAAATGCTCTTTAAGGAGGTGTGACTTCTCGAGGTTTGATGAGGGAT
391 GCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTATCGAGGTTTGATGAGGGAT
* * *
6075782 AGAGGGCCAATATAAGGGCCAAGTAGCAGCACTCATCGCACATCATGTGCGCACACCCCCCGGCC
455 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * *
6075847 CCCCCGATCACCGGAACACCAATGCTGCCGATCAGGTTCTCCGACGATGCTCCGGCGATGGTGCC
520 CCCCCGATCACCGGAAC-CCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
* * * ** *
6075912 CCGATGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCGGG
584 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* *
6075977 CTGGTCCGATCTTAGACTCGGAATAAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCT
649 CTGGTCCGATCTTAGACT-GGAATGAACTCCATATGCTTAGACTG-GAAT-AACTCCGTATGCCT
* *
6076042 AAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGGCAAGAGGGGCGGGATGCGCAAGCTGG
711 AAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGGCAAGAGGGGCAGGATGCGCAAGCTGG
* * * ** * * *
6076107 GGATCGGTCAGGTCCCCCTCTGTATGCTGCCAATCTTGCTGTTGCAACCCTCAGTCTGGTCCGAT
776 GGATCGGTCGGGTCCCCCTCTGTA-GCTGCCGATCCTGCTGCCGCAACCCTCGGTCGGGTCTGAT
* * * *
6076172 CTTAGACTGGGAATGAAACTCTGTTTGCCTAAGCCAACTGATGAAATGAGCA
840 CTTAGACTGGGAATG-AACTCCGTATGCCTAAGCCAACTGACGAAACGAGCA
* * * ** *
6076224 GGCGGGCGGGCGAGAACTACACCGACCAGAGAGACGAGATATGCAAGCCGTTGATCGATAGGGTG
1 GGCGGGCGGGC----ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
6076289 GTAGGTGGGTTTAGCCACATCTTCTTATTTCTACATGCCAATG-CATTTTTATGGCTTGTAAATT
62 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
6076353 CATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATCGCAAGATGACTCGTTTTCTATTTTTC
127 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* ** * * * *
6076418 ATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCTCC
192 ACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * * * *
6076483 ACACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCG
257 AAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
6076548 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGTCTACT
322 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
6076613 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCGAGGTTTGATGAGG
387 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCGAGGTTTGATGAGG
* * *
6076678 GATATGGGGCCAATATAAGGGCCAAGTACCTGCACCCATCGCAGATCATGTGCGCACACCACCCC
452 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA-CA--CC
* * * *
6076743 CACCCGGCCCCCCCAATCACCAGAACCCAATGCCGTCGGTCAGGTTCTCCGGCGATACTCCGACG
512 C-CCCGGCCCCCCCGATCACCGGAACCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACG
* *
6076808 ATGGTGCCCCGGA-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGTTGCCGCA
576 ATGGTGCCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
*
6076872 ACCCTCGGT-TCGGTCCGATCATAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATAAACT
640 ACCCTCGGTCT-GGTCCGATCTTAGACT-GGAATGAACTCCATATGCTTAGACT-GGAAT-AACT
** *
6076936 CCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGGCTTGAGGGGCAGGAAG
701 CCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGGCAAGAGGGGCAGGATG
* * *
6077001 CGCAAGCTGGGGATCGGTCGGGTCCCCCTCTACG-AGCTGGCGATCCTGCTACCGCAAGCCTCGG
766 CGCAAGCTGGGGATCGGTCGGGTCCCCCTCT--GTAGCTGCCGATCCTGCTGCCGCAACCCTCGG
* * *
6077065 TTC-GGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAACA
829 -TCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCA
* *
6077127 AGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATTG-ACAAGCCGTGGATCGATAGGGTGGTA
1 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA-TGCGCAAGCCGTGGATCGATAGGGTGGTA
* ** *
6077191 GGTGAGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTGTGGCTTGTAAATTCAT
65 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
6077256 ACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACG
130 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* *
6077321 ATTTTCAAAACTTTTTACGGTTCCAGATTTTTTAAAATTATTTCGGAAGGAGTTTTGGCCCCAAA
195 ATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
6077386 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAAATCGAAG
260 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
6077451 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGT
325 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
6077516 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
390 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCGAGGTTTGATGAGGGAT
*
6077581 AGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG--
455 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * * *
6077644 CCCCCGATCACCGGAACCCAATGCCATCGGTTAGGTTCTCCAACGATGCTCTGACGAGGGT-CCC
520 CCCCCGATCACCGGAACCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* *
6077708 CGACGAAGAAAAATGCGGTACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
585 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
*
6077773 TGGTCCGATCTTAGACTGG---G------A-ATG---A-AC-----T-A---CGTATGCCAAAGT
650 TGGTCCGATCTTAGACTGGAATGAACTCCATATGCTTAGACTGGAATAACTCCGTATGCCTAAGT
* ** * * * *
6077815 CAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGCAGGATGCGTAAGCCGGGGAT
715 CAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGGCAAGAGGGGCAGGATGCGCAAGCTGGGGAT
* **
6077880 CGGCCGGGTCTACCTCTGT-GTACTGCCGATCCTGCTGCCGCAACCCTCGGTCGGGTCTGATCTT
780 CGGTCGGGTCCCCCTCTGTAG--CTGCCGATCCTGCTGCCGCAACCCTCGGTCGGGTCTGATCTT
6077944 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGC-
843 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCA
* * *
6077991 GGATGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTA
1 GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
6078056 GGTGGGTTTAGGAAGATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
65 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
6078121 ACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
130 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * *
6078186 ATTTTGGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AA
195 ATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
*
6078250 CTTGGTAGACATG-TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAG
260 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
6078314 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCTAGACAATTTAATGGCTACTGG
325 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGG
* *
6078378 CAGCAAACCTGTAAAATCTCAAATGCTCCTTAA-GGGGTGTGAG-TACTCCAGGTTTGATGAGGG
389 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTA-TCGAGGTTTGATGAGGG
6078441 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--T------A--------
453 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * * *
6078490 --------AT-----G---TC-A---C--CGGTCAGGTTCTCCGGCGATGCT-CTAGTGATGGTG
518 CCCCCCCGATCACCGGAACCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTG
** * * * * * *
6078532 CCCCGACGAAGAAAAATATGGAACCAGCACATGTCCGAGCCCAACATGTGCTGCCACAATCCTCA
582 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
*
6078597 GTCTGGTCCGATC-T----T---A-G--------A--C-T---C-GGAATGACT-CGTATGCCTA
647 GTCTGGTCCGATCTTAGACTGGAATGAACTCCATATGCTTAGACTGGAATAACTCCGTATGCCTA
* * * * * * * *
6078637 AGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCTGCCAGAGGGG-GGAGATGCGCAAGCCGA
712 AGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGGCAAGAGGGGCAG-GATGCGCAAGCTGG
** * * * * **
6078701 GGATCGGTCGGGTCCCCCTCTACATGATGTCGATCCTGCTGCCGCAGCCCTCGGTCTGGTCCAAT
776 GGATCGGTCGGGTCCCCCTCTGTA-GCTGCCGATCCTGCTGCCGCAACCCTCGGTCGGGTCTGAT
* * * *
6078766 CTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACG
840 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCA
* * *
6078817 GGCGGGCGGGCAAGC-ACTAGACCGACTAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGT
1 GGCGGGCGGGC-A-CTAC--G-CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
6078881 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
61 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
6078946 TCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTT
126 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** ** * *
6079011 GGCGATTTTTGAAACTTTTTACAGTTCGGGATTTTTT-AAATTCTTTTCGGAAGGAGTTTTGGCC
191 CACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCC
* * *
6079075 CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTAAGCT-AAAACT
255 CCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
6079139 TGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
320 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
6079204 CTGGTAGCAAACCAGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
385 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCGAGGTTTGATGA
*
6079269 GGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
450 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
** * * * *
6079334 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGACAGGTTCTCCGGCAATGCTCCGTCGATG
515 CGGCCCCCCCGATCACCGGAA-CCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATG
* *
6079399 GTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCT-CCGCAACCC
579 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * *
6079463 TCGGTCTAGTTCAATCTTAGACTGG---G------A-ATG---A-AC-----T-A---CATATGC
644 TCGGTCTGGTCCGATCTTAGACTGGAATGAACTCCATATGCTTAGACTGGAATAACTCCGTATGC
* ** * * * * * *
6079505 CTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGACGTGTAAGCC
709 CTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAACCGGCAAGAGGGGCAGGATGCGCAAGCT
* * * * * * * * * * *
6079570 GAGGATCGGCCGGGTCCCCTTCTACGT-GTTGTCGATCCTGCTCCCACAACCCTCGATCCGATCC
774 GGGGATCGGTCGGGTCCCCCTCT--GTAGCTGCCGATCCTGCTGCCGCAACCCTCGGTCGGGTCT
* * * * *
6079634 AATCTTAGACTTGGAATGAACTCCGTATGCCGAAGCCAACCGATGAAACGAGCA
837 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCA
* *
6079688 AGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATTG-ACAAGCCGTGGATCGATAGGGTGGTA
1 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGA-TGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
6079752 GGTGGGTTTAGGCACATCTTTATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
65 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
6079817 ACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAATACGACTCGTTTTCTATTTTTCATG
130 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
6079882 ATTTTCGAAACCTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAA
195 ATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
** * * * *
6079947 CCAGGTAGACATGATCCTTGCATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGGAC
260 CTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
6080012 TGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGC
325 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
6080077 AGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
390 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCGAGGTTTGATGAGGGAT
*
6080142 AGGGGGCCAATATAAGGGCCAAGTACCTGCACCCATCGCACATCATGTGCGCACA-----C--CC
455 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
** * * *
6080200 CCCCCGATCGTCGAAACCTCAATGCCGTCGG-CTAGGTTCTCTGGCGATGCTCCGACGATGGTGC
520 CCCCCGATCACCGGAACC-CAATGCCGTCGGTC-AGGTTCTCCGACGATGCTCCGACGATGGTGC
* * * * * **
6080264 CCTGACGAAGAAAAATGTGGTACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAAGCCTCTA
583 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * *
6080329 TCTAGTCTGATCTTAGACTGGGATTGAACTCCGTATGC
648 TCTGGTCCGATCTTAGACT-GGAATGAACTCCATATGC
6080367 CTAAGCCAAC
Statistics
Matches: 3656, Mismatches: 357, Indels: 282
0.85 0.08 0.07
Matches are distributed among these distances:
818 1 0.00
820 1 0.00
821 1 0.00
822 2 0.00
823 1 0.00
824 1 0.00
825 171 0.05
826 31 0.01
827 71 0.02
828 7 0.00
829 219 0.06
830 113 0.03
831 111 0.03
832 2 0.00
833 1 0.00
835 1 0.00
839 1 0.00
840 2 0.00
854 1 0.00
855 2 0.00
860 5 0.00
861 105 0.03
862 100 0.03
863 142 0.04
864 20 0.01
865 396 0.11
866 1 0.00
867 263 0.07
868 194 0.05
869 20 0.01
870 80 0.02
871 171 0.05
872 2 0.00
873 4 0.00
874 2 0.00
875 1 0.00
876 3 0.00
877 1 0.00
878 1 0.00
880 3 0.00
881 1 0.00
887 1 0.00
890 4 0.00
891 75 0.02
892 53 0.01
894 5 0.00
895 3 0.00
896 10 0.00
897 2 0.00
898 2 0.00
899 441 0.12
900 454 0.12
901 2 0.00
902 2 0.00
903 40 0.01
904 278 0.08
905 28 0.01
906 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
TTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
CCCCGATCACCGGAACCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT
GGTCCGATCTTAGACTGGAATGAACTCCATATGCTTAGACTGGAATAACTCCGTATGCCTAAGTC
AACCCACGAAAAGAGCGTGCGGGCGCTCAACCGGCAAGAGGGGCAGGATGCGCAAGCTGGGGATC
GGTCGGGTCCCCCTCTGTAGCTGCCGATCCTGCTGCCGCAACCCTCGGTCGGGTCTGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCA
Found at i:6081538 original size:714 final size:709
Alignment explanation
Indices: 6079635--6082505 Score: 3713
Period size: 714 Copynumber: 4.0 Consensus size: 709
6079625 ATCCGATCCA
* * * * **
6079635 ATCTTAGACTTGGAATGAACTCCGTATGCCGAAGCCAACCGATGAAACGAGC--AAGC-G-GGC-
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGTGGGCGGTGGCG
6079695 --GGGCACTACGCCGGCCAGAGAGACGGGAT-TGACAAGCCGTGGATCGATAGGGTGGTAGGTGG
66 GGGGGCACTACGCCGGCCAGAGAGACGGGATGTG-CAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
6079757 GTTTAGGCACATCTTTATATTT-TTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
130 GTTTAGGCACATCTTCATATTTCTT-CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
6079821 TGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAATACGACTCGTTTTCTATTTTTCATGATTT
194 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTT
* * **
6079886 TCGAAACCTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA-AGAGTTTTGGCCCCAAACCA
259 TCGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAGA-AGTTTTGGCCCCAAACTT
* * ** *
6079950 GGTAGACATGATCCTTGCATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGGACTGT
323 GGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
* * *
6080015 ACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGC
388 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGC
*
6080080 AAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
453 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
*
6080145 GGGCCAATATAAGGGCCAAGTACCTGCACCCATCGCACATCATGTGCGCACA------C--CCCC
518 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
*
6080202 CCCGATCGTCGAAACCTCAATGCCGTCGG-CTAGGTTCTCTGGCGATGCTCCGACGATGGTGC-C
583 CCCGATCGTCGAAACCCCAATGCCGTCGGTC-AGG-----T---G-TGCTCCGACGATGGTGCTC
* * * *
6080265 CTGACGAAGAAAAATGTGGTACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAAGCCTCTA-
638 C-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-TAG
* *
6080329 TCTAGTCTG
701 TCCAGTCCG
* * * * *
6080338 ATCTTAGACTGGGATTGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGC--AGGC-G-GAC-
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGTGGGCGGTGGCG
* ** * *
6080398 --GGGCACAACGCTAGCCAGAGAGACGGGATGAGCAAGCCGTGGATCGATAGGGTGGTAGGTGCG
66 GGGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
6080461 TTTAGGCACATCTTCATATTTGTACATGCCAGTGCCATTTTTATGGCTTGTAAACTCATACAATG
131 TTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
6080526 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT-AGTTTTCTAATTTTC-TCGATTT
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA-TTTTCTATTTTTCAT-GATTT
* * *
6080589 TTGAAACTTTTTACGGTTCAGGA-TTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
259 TCGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTG
* * * *
6080653 GTAGACATGACCCCTGTA-TTTTTTTGGCATGCATAAACAAA-TCAGCTAAAAACTCAAAGTGTA
324 GTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
* * * *
6080716 CAAGATTTTGTGACAATTTGAATAAAGTGTCCCCATTTCAAACACATTAATGGCTACTGGCAACA
389 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
* *
6080781 AACCTGAAAAATCTCAAATGCTCTCTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
454 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* *
6080846 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCAC
519 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* **
6080911 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT-T-CTCCGACGATGGTGCTCCGGGGAAGAAA
584 CCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTGTGCTCCGACGATGGTGCTCCGACGAAGAAA
* * * *
6080974 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCCAGTCTG
649 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTAGTCCAGTCCG
*
6081035 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGTGGGCGGGTG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGC--GTGGGC-GGT-
* * *
6081100 GGCGGGTTAGTGGCCACTACGTCGGCCAAAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTG
62 GGCGGG---G-GG-CACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTG
6081165 GTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATT
122 GTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATT
*
6081230 CACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
187 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
* * *
6081295 ATGA-TTTCTGAAACTTTTTACGGTTTGGGATTTTTTTAAATTTTTTTGGAAGAAGTTTTGGCGC
252 ATGATTTTC-GAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAGAAGTTTTGGCCC
* * *
6081359 CAAACTTGGTAGACTTGATCCTTGTA-GTCTTTTGGCATGCACAAAAAAA-TCAGCTAAAAACTC
316 CAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
6081422 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAGTTTAACGGCTAC
381 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTAC
*
6081487 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
446 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
*
6081552 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCCC
511 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* *** *
6081617 CGACCCCCCCGATCGTCGAAACTGTAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATG
576 CGGCCCCCCCGATCGTCGAAACCCCAAT---GCC-GTC-GG---TCAGGTG-TGCTCCGACGATG
* * *
6081682 GTGCT-TGACGAAGAAAAATACGGCACCAGCACATGCCCGAGGCCAGCATGTGCTGCCGCAACCC
632 GTGCTCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
*
6081746 TAAGTCCAGTCCG
697 TTAGTCCAGTCCG
* * * *
6081759 ATCTTAGACCGGGAATCAACTCCGTATCCCTAAGCCTACCGACGAAAAGA--GTGGGCGGT--CG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGTGGGCGGTGGCG
* * *
6081820 GGCGGGCAGTACGCCGGCCAGAGAGACGGGATGCGCAAGCGGTGGATCGATAGGGTGGTAGGTGG
66 GG-GGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
6081885 GTTTAGGCACATCATCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
130 GTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * ** * *
6081950 GGTCCCTTAAACCTTCTCGTGAAGTTTCATGGCAAGACGACTTGTTTTTTATTTTTCACGATTTT
195 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTT
* * * * * *
6082015 CAAAAATTTTTACAGTTCGGGATTTTTTTAAAATTTTTTCGGAAGGATTTTTGACCCCAAACTTG
260 CGAAACTTTTTACGGTTCGGGATTTTTTT-AAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTG
* * *
6082080 GTAGACGTGATCCTTGTATTTTTTTTGGCTTGCGCAAAAAAATTCAGCTAAAAACTCAAAGTGTA
324 GTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
* *
6082145 CAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
389 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
* * * * **
6082210 AACCTATAAAATCTCAAATGCTTTTTAAAGGGGTGTGGGTTCTTGAGGTTTGATGAGGGATAGGG
454 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* *
6082275 GGCCAATATATGGGCCAAGTACCAGCACCCATCGGACATCATGTGCGCACACCACCCCCCGGCCC
519 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCCGGCCC
* * * * * ** *
6082340 CCCCGATCATCGAAACCCTATTGCTTCCGGTCAGGTTCTCCGGTGATGCTCTGGGGATGGTGCCC
582 CCCCGATCGTCGAAACCCCAATG---CC-GTC-GG---TCAGGTG-TGCTCCGACGATGGTGCTC
* * * * *
6082405 CGACGAAGAAAAATGCGGCACCAGCACATGCCTGAACCTAGCATGTGCTGCCGGAACCCTCAGTC
638 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTAGTC
*
6082470 CGGTCCG
703 CAGTCCG
* *
6082477 ATCTTAGAGTGGGAATGACCTCCGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
6082506 TTAGACTGGG
Statistics
Matches: 1922, Mismatches: 189, Indels: 99
0.87 0.09 0.04
Matches are distributed among these distances:
696 1 0.00
697 124 0.06
698 3 0.00
700 188 0.10
701 25 0.01
702 52 0.03
703 247 0.13
704 2 0.00
705 2 0.00
706 1 0.00
708 33 0.02
709 1 0.00
711 1 0.00
712 199 0.10
713 239 0.12
714 314 0.16
715 190 0.10
716 5 0.00
717 65 0.03
718 90 0.05
719 5 0.00
720 6 0.00
722 5 0.00
724 108 0.06
725 16 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (709 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGTGGGCGGTGGCG
GGGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTC
GAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGGT
AGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCC
GATCGTCGAAACCCCAATGCCGTCGGTCAGGTGTGCTCCGACGATGGTGCTCCGACGAAGAAAAA
TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTAGTCCAGTCCG
Found at i:6082508 original size:26 final size:26
Alignment explanation
Indices: 6082479--6082531 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6082469 CCGGTCCGAT
* *
6082479 CTTAGAGTGGGAATGACCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
6082505 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6082531 C
1 C
6082532 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:6083410 original size:26 final size:26
Alignment explanation
Indices: 6083381--6083432 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
6083371 CTGATCCGAT
6083381 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
* *
6083407 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
6083433 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:6083799 original size:26 final size:26
Alignment explanation
Indices: 6083763--6083815 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
6083753 TTGGTCCGAT
*
6083763 CTTAGAGTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
6083789 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
6083815 C
1 C
6083816 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:6085765 original size:26 final size:26
Alignment explanation
Indices: 6085736--6085788 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6085726 CCAGTCCGAT
6085736 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6085762 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6085788 C
1 C
6085789 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:6089753 original size:26 final size:26
Alignment explanation
Indices: 6089723--6089775 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6089713 GTTGACTTAG
* *
6089723 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
6089749 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
6089775 G
1 G
6089776 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:6092512 original size:719 final size:712
Alignment explanation
Indices: 6090704--6092788 Score: 2943
Period size: 721 Copynumber: 2.9 Consensus size: 712
6090694 GCATGTGCCG
* *
6090704 GGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC-AGCGGCATTGGGGTTCTGATGATCGGG
1 GGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGA-CGGCATTGGGGTTCCGATGATCGGG
6090768 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC-C----T-------
65 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCC
* * *
6090821 TATCCCTCATCAAAGCTCGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTAC
130 TATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * *
6090886 TACCAGTAGCAATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGATCACAAAATCTTGTAC
194 TGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
6090951 ACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCAA
258 ACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
*
6091016 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
323 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* *
6091081 TCATGAAAAATAGAAAACGAGTCATTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
388 TCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * * * *
6091146 TATGAATTTACAAGCCATAAAAATGGCATTGGTACACAAAGATATGAATATTTGCCTAAACCCAC
453 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCAC
* *
6091211 CTAGCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCGGACGTAGTGCCCGCTCGCC
518 CTAACACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCGG-CGTAGT----GATCGCC
6091276 CGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
578 CGCCCGCCCGCCCG-TCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
* * *
6091341 CGGATCGGACCGAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCAACCTTTTTC
642 CGGACCGGACCGAGGGTTGCGACAGCACATGCTGGCCTCGGGCATGTGCTGGTGC-ACCTTTTTC
6091406 TTCACTA
706 TTCACTA
* * * * *
6091413 GGGCACCATCGTTGGAGCATCGCCGAAGAACCTGACCGGCAGG-TTTGAGGTTCCGGTGATCGGG
1 GGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGAC-GGCATTGGGGTTCCGATGATCGGG
* * * * * *
6091477 GGGCCGACGGGGTGTCCGCAAATGATGTGCGGTGGGTGCTGCTACTTGGCCCTTATATTGGCCCC
65 GGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCC
*
6091542 CTATCCGTCATCAAACCTCGA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
129 CTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
6091606 CTGCCAGTAGCCATTAAAGTGTTTGAAAGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
193 CTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
6091671 CACTTCGAGTTTTTAGCTGAATATTTTTATGCATGCCAACAAAAGTACAAGGATCACGTCTACCA
257 CACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
*
6091736 AGTTTGGGGACAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-TCAAAAAGTTTCAAA
322 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAA
* * * * * *
6091800 AATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGATCGT
386 AATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
6091865 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCC
451 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCC
*
6091930 ACCTAACACCCTATCGATTCACGGCTTGTGCATCCCGTCTCTCTGGCTGGCGTAGTGATCGCCCG
516 ACCTAACACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGC-GGCGTAGTGATCGCCCG
* * *
6091995 CCCGCCCGCCCGTTCATTTTGTCGGTTGGCTTAGGCATACGAAATTCATTCCCAGTCTATGATCG
580 CCCGCCCGCCCG-TCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCG
* ** *
6092060 GACCGGACCGAGGGTTGTGGTAGCACATGCTGGCCTCGGGCATGTGCTGGTGC-CGTATTTTCCT
644 GACCGGACCGAGGGTTGCGACAGCACATGCTGGCCTCGGGCATGTGCTGGTGCACCT-TTTT-CT
* *
6092124 TC-GTC
707 TCACTA
* * * *
6092129 GCGGCACCAACGTCGGAGCATCGTCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGTTCGGG
1 G-GGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGATGATC-GG
*
6092194 GGGGCCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCC
64 GGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCC
* *
6092259 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGAATTTACAGGTTT
128 CCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTT
6092324 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATC-TGT
192 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG-ACACTTTTTTCAAATGGTCACAAAATCTTG-
* * * *
6092388 TACTCTTTGAGTTTTT-GCCTTAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
255 TACACTTCGAGTTTTTAG-CTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
6092452 CCAAGTTTGGGGCCAGAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT-A
319 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
*
6092516 TAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAACGGAC
384 -AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * *
6092581 CATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
448 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAA
* * *
6092646 CCCTCCTACCACCCTATCGA-TCTACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCAT-
513 CCCACCTAACACCCTATCGATTC-ACGGCTTGCGCATCCCGTCTCTCTGG-CGGCGTAGTG-ATC
* * * * *
6092709 ----GCCCGCCCG--C-TCGTTTCGTCAGTTGGCTTAGGCAGACGGAGTTGATTCCCAGTCTAAG
575 GCCCGCCCGCCCGCCCGTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAG
*
6092767 ATCAGACCGGACCGAGGGTTGC
640 ATCGGACCGGACCGAGGGTTGC
6092789 AGCAGTAGGA
Statistics
Matches: 1229, Mismatches: 113, Indels: 66
0.87 0.08 0.05
Matches are distributed among these distances:
709 59 0.05
710 42 0.03
711 60 0.05
713 1 0.00
715 12 0.01
716 8 0.01
717 168 0.14
718 89 0.07
719 377 0.31
720 4 0.00
721 389 0.32
722 20 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (712 bp):
GGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGG
GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCT
ATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTA
ACACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTGGCGGCGTAGTGATCGCCCGCCCGCC
CGCCCGTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGA
CCGAGGGTTGCGACAGCACATGCTGGCCTCGGGCATGTGCTGGTGCACCTTTTTCTTCACTA
Found at i:6092928 original size:26 final size:26
Alignment explanation
Indices: 6092899--6092951 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6092889 GTTGACTTAG
* *
6092899 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
6092925 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6092951 G
1 G
6092952 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6093469 original size:214 final size:217
Alignment explanation
Indices: 6093097--6093502 Score: 694
Period size: 214 Copynumber: 1.9 Consensus size: 217
6093087 GGGGGGCTTG
* *
6093097 GGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
6093162 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCA
66 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCA
* *
6093227 ATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATC
131 ATAGCCATTAAAGTGTCTAAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACATC
6093292 GGGTTTGTACACTTCGGGGGCC
196 GGGTTTGTACACTTCGGGGGCC
6093314 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-G-CCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
6093377 CTCA-CAAA-CTGGAGAACTCACACTCCCTTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
66 CTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTCCTGCC
* *
6093440 AGTAGCCATTAATGTGTCTAAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACAC
130 AATAGCCATTAAAGTGTCTAAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACAC
6093503 TTAGAGTTTT
Statistics
Matches: 179, Mismatches: 9, Indels: 5
0.93 0.05 0.03
Matches are distributed among these distances:
213 19 0.11
214 95 0.53
215 13 0.07
216 1 0.01
217 51 0.28
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (217 bp):
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCA
ATAGCCATTAAAGTGTCTAAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTGTACACATC
GGGTTTGTACACTTCGGGGGCC
Found at i:6095492 original size:26 final size:26
Alignment explanation
Indices: 6095450--6095502 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6095440 GTTGACTTAG
* *
6095450 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATAATTCCCAGTCTAA
6095476 GCATACGGAGATAATTCCCAGTCTAA
1 GCATACGGAGATAATTCCCAGTCTAA
6095502 G
1 G
6095503 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATAATTCCCAGTCTAA
Found at i:6095820 original size:902 final size:879
Alignment explanation
Indices: 6093887--6095940 Score: 2846
Period size: 902 Copynumber: 2.3 Consensus size: 879
6093877 CGAAGATCAG
*
6093887 AATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
1 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
6093952 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
6094017 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTGT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
6094082 GCATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCCAAAAATCCATCCGAAAAAA
196 GCATGCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TCCGAAAAAA
6094147 -TTTAAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCCTCTT
259 TTTTAAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCCTCTT
*
6094211 GCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
324 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
6094276 TTGGCACACAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
389 TTGGCACACAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACA
* * * * *
6094341 CATCCCGTCTCTCTGACCGGCGTAGTGATCGCCCACCCGCTCGCCCGCCCCCTCGTTTCATCGGT
454 CATCCCGTCACTCTGACCGACGTA--GATCGCCCACCCGCCCGCCCGCCCCCTCATTTCATCAGT
* * * * * *
6094406 TGGCTTAGGTATATGAAGTTCATTCCCAGTCTAAAATCAGATCAGACTGAGGGTTGCGGCAGCAG
517 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAAATCAAACCAGACCGAGGGTTGCAGCAGCAG
** * * *
6094471 GATCGGTAGCACGCAGAGGGGGACCCCGTCGATCACTAGCTTACGCATCCCGCCCCTCTGGTCGG
582 GATCGACAGCACGCAGAGGGAGACCCCGTCGATCACCAGCTTACGCATCCCGCCCCTCTGGCCGG
*
6094536 TTGAGCGCCCGCACGGTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
647 TTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *
6094601 TCGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCATATTTTT
712 TCGGACCGGACCGAGGGTTGCGGCAGCACAAGCTGGGCTCGGGCATGTGCTAGTGCCATATTTTT
* ** * * *
6094666 CTTCGTAGGGGCACCATCGCTGGAGCTTCACCAGAGATCCTGACCGACGGCATTAGGGTTTCGGC
777 CTTCATAGGGGCACCATCGCCAGAGCATCACCAGAGAACCTGACCGACGGCATTAGGGTTTCGAC
*
6094731 GATCGAAGGTCCGTGGCGGGTGTGCGCACATGATGTGC
842 GATCGAAGGGCCGTGGCGGGTGTGCGCACATGATGTGC
*
6094769 AATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
1 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
6094834 CCCCTTTAAAGAGCATTTGAGATTTTACAGCTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
6094899 GGGATACTTTTTTCAAATGGTCACAAAATCTGGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
6094964 GCATGCCAAAAAAGATACAAGGATCACGTCTACCATGTTCGGGGCCAAAACTCCTCCCGAAAAAA
196 GCATGCCAAAAAA-ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCT-CCGAAAAAA
* * * *
6095029 TTTTAAAAACATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
259 TTTTAAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCCTCTT
* ** *
6095094 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGGATAAAAATGGCT
324 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * * *
6095159 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCTACG-CTTACA
389 TTGGCACACAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACA
* * * * ** * *
6095223 CATCCCGTCACTCTGGCCGACGTA-CT-GCCCGCCTGCCCGCCCGCCTGCTCATTTCGTTAGTTG
454 CATCCCGTCACTCTGACCGACGTAGATCGCCCACCCGCCCGCCCGCCCCCTCATTTCATCAGTTG
* *
6095286 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGCAGCAGCAGGA
519 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAAATCAAACCAGACCGAGGGTTGCAGCAGCAGGA
** * * ** * *
6095351 TCGACAGCACGCAGAGGGAGACTGC-TCGATCCCCGGCTTGTGCATCCTGCCTCTCTGGCCGGTT
584 TCGACAGCACGCAGAGGGAGACCCCGTCGATCACCAGCTTACGCATCCCGCCCCTCTGGCCGGTT
** * *
6095415 GAGCGCCTTCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
649 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT
6095480 ACGGAGATAATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGCGGCAGCACAAGCTGGGCTCG
713 -C-G-G---A---CC-G-----G-----ACC-G----AGGGTTGCGGCAGCACAAGCTGGGCTCG
* * ** *
6095545 GGCATGTGCTAGTGCCGTATTTTTCTTCATGGGGGCACCATCGCCAGAGCATCGTCGGAGAACCT
753 GGCATGTGCTAGTGCCATATTTTTCTTCATAGGGGCACCATCGCCAGAGCATCACCAGAGAACCT
* * ** *
6095610 GACCGGCGGCATT-GGGGTTCTGACGATCGGGGGGGCCG-GG-GGGTGTGCGCGCATGATGTGC
818 GACCGACGGCATTAGGGTTTC-GACGATC-GAAGGGCCGTGGCGGGTGTGCGCACATGATGTGC
* * *
6095671 GATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACA
1 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
6095736 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
6095801 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
131 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
6095866 GCATGCCAAAAAAAGTACAAGGATCATGTCTACCAAGTTTGGAGCTAAAACTCCTTCTGAAAAAA
196 GCATGCCAAAAAAA-TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TCCGAAAAAA
6095931 TTTTAAAAAA
259 TTTTAAAAAA
6095941 TCTAGGAGAA
Statistics
Matches: 1031, Mismatches: 108, Indels: 46
0.87 0.09 0.04
Matches are distributed among these distances:
877 88 0.09
878 107 0.10
879 2 0.00
880 1 0.00
881 6 0.01
882 264 0.26
883 172 0.17
884 1 0.00
887 2 0.00
888 1 0.00
893 1 0.00
898 3 0.00
899 1 0.00
901 1 0.00
902 275 0.27
903 100 0.10
904 6 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (879 bp):
AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTCCGAAAAAATT
TTAAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCCTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACACA
TCCCGTCACTCTGACCGACGTAGATCGCCCACCCGCCCGCCCGCCCCCTCATTTCATCAGTTGGC
TTAGGCATACGAAGTTCATTCCCAGTCTAAAATCAAACCAGACCGAGGGTTGCAGCAGCAGGATC
GACAGCACGCAGAGGGAGACCCCGTCGATCACCAGCTTACGCATCCCGCCCCTCTGGCCGGTTGA
GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
ACCGGACCGAGGGTTGCGGCAGCACAAGCTGGGCTCGGGCATGTGCTAGTGCCATATTTTTCTTC
ATAGGGGCACCATCGCCAGAGCATCACCAGAGAACCTGACCGACGGCATTAGGGTTTCGACGATC
GAAGGGCCGTGGCGGGTGTGCGCACATGATGTGC
Found at i:6096237 original size:26 final size:26
Alignment explanation
Indices: 6096201--6096253 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6096191 GTTGACTTAG
6096201 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
6096227 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6096253 G
1 G
6096254 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6097117 original size:26 final size:26
Alignment explanation
Indices: 6097080--6097132 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
6097070 GTTGAATTAG
6097080 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6097106 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
6097132 G
1 G
6097133 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6098015 original size:26 final size:26
Alignment explanation
Indices: 6097979--6098030 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
6097969 GTTGATTTAG
6097979 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6098005 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6098031 AATCTGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6098910 original size:26 final size:26
Alignment explanation
Indices: 6098874--6098926 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6098864 GTTGAATTAG
6098874 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6098900 GCATTCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6098926 G
1 G
6098927 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6099918 original size:903 final size:901
Alignment explanation
Indices: 6095950--6101614 Score: 6878
Period size: 903 Copynumber: 6.3 Consensus size: 901
6095940 ATCTAGGAGA
* * * *
6095950 ACCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTG----CTCG
1 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACACG
* * **
6096011 CCCGCCCG-C-TCGTTTCGTCGGTTGGGTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGA
66 CCCGCCCGCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * * * * *
6096074 TCAGACCGAGGGATGCGGTAGCAGGGTTGGTAGCACGTAGTGAGGGACTCGACCAATCCCCGGCT
131 CCAGACCGAGGG-TGTGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
** * * * *
6096139 TGCGCATCCCGCCCCTCTGGTTGGCTGAGTGCCTCGTATGCCCGTTTCGTGGGTTGACTTAGGCA
195 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * *
6096204 TACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTGCCAGTCTAAGATCAGACCGGA-CGA
259 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
* * * * *
6096268 GAGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCGCC-A-G-AG
324 GGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCAC
** **
6096330 CATC-T-------TCG--G-AGAACCTGACCAACGGCATTGGGGTTCCGAT-GATCGGGGGGGTT
389 CATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCG-TCGATCGGGGGGGCC
* * *
6096383 GGGCGGGGTGTGCGTACATGATCTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
453 GGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
6096448 CCCTCATCAAACCTCGAGAACTCACACCCCCTTCAAGAGCATTTGGGATTTTACAGGTTTGCTGC
517 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
6096513 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACT
582 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * *
6096578 TCGTGTTTTTAGCTG-ATTTGTTTTGTACATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
647 TTGAGTTTTTAGCTGAATGT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
6096642 TTGGGGCCAAAACTCCTTCCCAAAAAATTTTAAAAAATCTCGAACCGT-AAAAGTTTTAAAAATC
711 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
6096706 ATGAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AGGGACCATTGT
776 ATG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
6096770 ATGAATTTACAAGCCATAAAAATGGCATTGGC--GCATAGAAATATGAAGATGTTCCTAAA-CC
840 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGC--AGAAATATGAAGATGTGCCTAAACCC
* *
6096831 ACCTACCACCCCTATAGAT-CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-C-C
1 ACCTACCA-CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACAC
* * *
6096891 GCCCGCCCG-C-TCGTTTCATCGGTTGGCTTAGGCGTAC-GAGTTCATTCCCAGTCTAAGATCAA
65 GCCCGCCCGCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * * *
6096953 ACCAGATCAAGGGTTGGGGCAGCAGGATCAGTAGCACGCAAAGGGGGACCCGTCCGATCACCGGC
130 ACCAGACCGAGGG-TGTGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* ** * * * * *
6097018 TTACGCATCTAGCCCCTCTGGCCGGCTGAGCGCACACACGCTCGTTTTGTTGGTTGAATTAGGCA
194 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * ** *
6097083 TACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCAA
259 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
** * * * * *
6097148 GGGTTGTAGCAGCACATGCTGGGCTCGGGCATGTGTTGGAG-C-CATTTTTCTTCATCGGGGCAC
324 GGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCAC
* * * * *
6097211 CATCGTCGGATCATCGCTGAAGAACCTGACC-GCGGCATTAGGGTTCCGTTGATCGGGGGGACC-
389 CATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGTCGATCGGGGGGGCCG
* * * *
6097274 AGGGGGTGTGCGCACATGATGTGC-ATGGGTGCTGGTATTTGGCTCTTATATTGGCCCCTTATCC
454 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
6097338 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCA
519 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
6097403 GTAGCCTTTAAAGTGTCTAAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
584 GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
* *
6097468 GAGTTTTTAGCTGAATGTTTTGGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTG
649 GAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* ** * *
6097533 GAGTAAAAACTCTTTCCGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCAT
714 GGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
*
6097598 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAACATTGTATG
778 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
6097663 AATTTACAAGCCATAAAAATGGCATTGGCATGTAGAACTATGAAGATGTGCCTAAACCC
843 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* *
6097722 ACCTACCACCCTATCGATTCACAGCTTGCGCAT-CCGTCTCTCTGGCCGGCGTAGTGCCCACACG
1 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACACG
* *
6097786 CCCGCCCGTCCGGTCGTTTCGTCGGTTGGCTTAAGCATACGGAGTTCATTCCTAGTCTAAGATCA
66 CCCGCCCG-CC-GTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
6097851 GACCAGACTGAGGGT-TACGGTAGCAAGATCGGTAGCACACGGAGGGGGACCCGATCGATCCCCT
129 GACCAGACCGAGGGTGT--GGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * * * * *
6097915 GCATGCGCATCGCGCCCCTTTGGCCGACTGAACGCCCGCACGCTCATTTCGTGGGTTGATTTAGG
192 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * *
6097980 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAAATCTGACCAGATC
257 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
* * * * *
6098045 GAGGGTTGCGGCAGCACATGTTGGGCTCAGGCATGTGCAGGTGCCGTATTTTTCTTCGCCGGGGC
322 GAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGC
* * * * * * *
6098110 ACCATCGTCGGAGCATCACCGGAGAACCTGACAGGCAGCATTGGGGTTCCGACAATC-GGGGGGT
387 ACCATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGTCGATCGGGGGGGC
**
6098174 C-GGGGGGTGTGCGCACATGATGTAAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
452 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
6098238 CCCTCATCAAACCTCAAGAACTCCCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
517 CCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * **
6098303 CTGTAGCCTTTAAAGTGTCTAAAATGGGGATGCTTTTTTTCAAATGGTCACAAAATCTTGTACAC
582 CAGTAGCCATTAAAGTGTCTAAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACAC
6098368 TTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
646 TTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * **
6098433 TTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAAT-CTGAACCGT-AAAAGTTTTGAAAATC
711 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
6098496 ATGAAAAATAGAAAATGAGTTGTCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
776 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
6098561 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGGCTAAACCC
841 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * *
6098622 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGGGTAGTGCCCGCCCG
1 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACACG
* * * * *
6098687 CCCGCCCG-C-TCATTTTGTCAGTTGGCTTAGGCATA-TGAGTTCATTCCCAGTCTAAGATTAGA
66 CCCGCCCGCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** ** * * *
6098749 CTGGACCGAGGGCTG-CACAGCAAGATCGGTAGCACGCGGAGGGGGACCCAACCGATCACCGGCT
131 CCAGACCGAGGG-TGTGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCT
* * * * * *
6098813 TACGCATCTCGCCCCTCTAGCCGGCTGAGCGCACGCACGCTCGTTTTGTGGGTTGAATTAGGCAT
195 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
6098878 ACGGAGTTCATTCCCAGTCTAAGCATTCGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAG
260 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAG
* * * ** * *
6098943 GGTTGCAGAAGCACATGCTGGGCTCAAGCATGTG-TTTTAGCTGCATTTTTCTTCACCGGGGCAC
325 GGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGT-GCCGCATTTTTCTTCACCGAGGCAC
* *
6099007 CATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGTCGATAGGGGGGACCG
389 CATCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGTCGATCGGGGGGGCCG
*
6099072 GGGAGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
454 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
6099137 CTCATGAAACCTTAAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTACCA
519 CTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * ** *
6099202 GTAGCCTTTAAAGTGTCTAAAATGGGGACGCTTTTTTCAAATGGTCGTAAAACCTTGTACACTTT
584 GTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
* * * *
6099267 GATTTTTTAGCTGAATATTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTTTACCAAGTTTG
649 GAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* *
6099332 GGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG
714 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG
* *
6099397 AAAAATAGAAAACGTGTCGTCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
779 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*** *
6099462 ATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATTTGAAGATGTGCCTAAACCC
844 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* *
6099520 ACCTACCACCCTATCGATTCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACACG
1 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACACG
* *
6099585 CCCGCCCGCCCGATCGTTTCGTCGGTTGGATTAGGCATACGGAGTTCATTCCCATTCTAAGATCA
66 CCCGCCCG-CCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * *
6099650 GATCAGACCGAGGGTGTGGCAGAAAGATCGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGC
129 GACCAGACCGAGGGTGTGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * * *
6099715 TTGTGCATCCCGCCACTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
194 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * * *
6099780 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTTTAAAATCAGACCAGATCGA
259 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGA
* * * * **
6099845 GGGTTACGGTAGCAGATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCAC
324 GGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCAC
* * * * *
6099910 CATCGTCGGAGCATC-ACTAGAGAACCTAACAGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC
389 CATCGTCGGAGCATCGCCGA-AGAACCTGACCGGCGGCATTGGGGTTCCGTCGATCGGGGGGGCC
* *
6099974 GGGGGGGTGTGTGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
453 GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
** *
6100039 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCC
518 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
6100104 AGTAGCCATTAAAGCGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
583 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
** * * * *
6100169 CAAGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTGCCAAGTTT
648 TGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * **
6100234 CGTGCCAAAACTCCGTCCGAAAAAATTTTGAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTGT
713 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
* * * *
6100299 GAAAAATGGAAAACGAGTTGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACAATTGTATG
778 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
**
6100364 AATTTACAAGCCATAAAAATGGTGTTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
843 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * *
6100423 ACCTACCACCCTATCAATCCACGGCTTGCGTAGCCCGTCTCTCTGGCCGACGTAGTGCCCACCCG
1 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACACG
* * * * *
6100488 TCTGCCCGTCCGATCGTTTCGTTGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATA
66 CCCGCCCG-CCG-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-
** ** * * * * * * **** **
6100553 CGGAGTTCATTCCCA--ATCT--AAGC-ATAT-GG-AGTTCATTCCCAGTCTAGGATTCGACCGG
127 C--AGACCAGACCGAGGGTGTGGCAGCAAGATCGGTAG--CA--CGCAGAGGGGGACCCGACC-G
*** ** * * * * ** * *
6100611 A-CTAAGGGATGCGGCAGCAGGACCGGTCGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTAC
185 ATCCCCGGCTTGC-GCATC----CC-G-C-CCCTCTG-GCCGG--CTGAGCG--CCC--GC--AC
**** * * * * * * * * * *** *
6100675 GCATCCCACCCCTCTGGTCGGCTGA-GCA-CCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATA
233 GC-T-CGTTTCGT-GGGTTGACTTAGGCATAC-GGA-GTTC-ATTC-CCAG-T--C-TAAGCATA
* * * * * * *
6100738 CGGAGTTCATTGCCAGTATAAGATCGGACCGGACCAAGAGTTGCGACAGCACATGCTGGGCTCGG
287 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAG
* * * ** * *
6100803 GCATTTGCTGGTGCCGCATTTTTCTTCACCAAGGCACCATCGCCAAAGCATCGTCGGAGAACCTG
352 GCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCGCCGAAGAACCTG
* * * * *
6100868 GCCGACGGCATTGGGGTTCTAG-CGATTGGGGGGGCGTGGGGGGGTGTGCGCACATGATGTGCGA
417 ACCGGCGGCATTGGGGTTC-CGTCGATCGGGGGGGC-CGGGGGGGTGTGCGCACATGATGTGCGA
**
6100932 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
480 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* * *
6100997 CCCTTAAAGAGCATCTGAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGT
545 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
* * *
6101062 GACACTTTTTTCAAATGGTCCCAAAATCTTTTACACTTTGAGTTTTTAGCTGAATGTTTTTATGC
610 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGC
* * *
6101127 AAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
675 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * *
6101192 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCTTAAAAAATAGAAAACAAGTCGTCTTACC
740 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
6101257 ATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTG
805 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
6101322 GCATGCAGAAATATGAAGATGTGCCTAAACCC
870 GCATGCAGAAATATGAAGATGTGCCTAAACCC
*
6101354 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCACACG
1 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACACG
* * *
6101419 CCCGTCTG-C-TCATTTCGTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGA
66 CCCGCCCGCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * * * *
6101481 CCGGACCGAGGGT-TAGGGCAACAGGATCGGCAGCACGTAGAGGGAGACCCTG-TCAATCCCTGG
131 CCAGACCGAGGGTGT--GGCAGCAAGATCGGTAGCACGCAGAGGGGGACCC-GACCGATCCCCGG
* * * *
6101544 CTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACACGGACGCTCGTTTCGTGGGTTGACTTAGGC
193 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
6101609 ATACGG
258 ATACGG
6101615 CATTGGGGTT
Statistics
Matches: 4095, Mismatches: 578, Indels: 196
0.84 0.12 0.04
Matches are distributed among these distances:
878 12 0.00
879 80 0.02
880 134 0.03
881 84 0.02
882 11 0.00
888 236 0.06
889 89 0.02
890 116 0.03
891 49 0.01
892 13 0.00
893 1 0.00
894 11 0.00
895 254 0.06
896 166 0.04
897 182 0.04
898 222 0.05
899 214 0.05
900 169 0.04
901 117 0.03
902 185 0.05
903 930 0.23
904 20 0.00
905 9 0.00
906 7 0.00
907 15 0.00
908 2 0.00
909 6 0.00
910 1 0.00
911 2 0.00
912 5 0.00
913 4 0.00
915 9 0.00
917 6 0.00
918 4 0.00
919 3 0.00
920 1 0.00
921 6 0.00
922 8 0.00
923 9 0.00
924 12 0.00
925 10 0.00
926 32 0.01
927 28 0.01
928 4 0.00
929 4 0.00
930 139 0.03
931 474 0.12
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACACG
CCCGCCCGCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCAGACCGAGGGTGTGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGG
GTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCA
TCGTCGGAGCATCGCCGAAGAACCTGACCGGCGGCATTGGGGTTCCGTCGATCGGGGGGGCCGGG
GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
AGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA
GTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
Found at i:6100559 original size:26 final size:26
Alignment explanation
Indices: 6100522--6100598 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
6100512 ATTGGCTTAG
*
6100522 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6100548 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6100574 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
6100599 GGATTCGACC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6102340 original size:738 final size:739
Alignment explanation
Indices: 6100872--6102349 Score: 2357
Period size: 738 Copynumber: 2.0 Consensus size: 739
6100862 AACCTGGCCG
*
6100872 ACGGCATTGGGGTTCTAGCGATTGGGGGGGCGTGGGGGGGTGTGCGCACATGATGTGCGATGGGT
1 ACGGCATTGGGGTTCTAGCGATTGGGGGGGCGTGGGGGGATGTGCGCACATGATGTGCGATGGGT
*
6100937 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
66 GCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTTGAGAACTCACACCCCCTT
* *
6101002 AAAGAGCATCTGAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGTGACAC
131 AAAGAGCATCTGAGAATTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGTGACAC
* * **
6101067 TTTTTTCAAATGGTCCCAAAATCTTTTACACTTTGAGTTTTTAGCTGAATGTTTTTATGCAAGCC
196 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTATGCAAGCC
* *
6101132 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
261 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAA
* *
6101197 AAATCCCGAACCGCAAAAAGTTTCAAAAATCTTAAAAAATAGAAAACAAGTCGTCTTACCATGAA
326 AAAGCCCAAACCGCAAAAAGTTTCAAAAATCTTAAAAAATAGAAAACAAGTCGTCTTACCATGAA
6101262 ACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATG
391 ACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATG
6101327 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
456 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
6101392 CTCTCTGGTCGGCGTAGTGCCCACACGCCCGTCTGCTCATTTCGTCGGTTGGCTTAGGCATACGA
521 CACTCTGGCCGGCATAGTGCCCACACGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGA
* * **
6101457 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAGGGCAACAGGATCGGCAGCACGTAGA
586 GTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTAGGGCAACAGGATCAGCAGCACACAGA
* * * * * * *
6101522 GGGAGACCCTGTCAATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCACACGGACGCT
651 GGGAGACCCAGCCAATCCCCGACTTACGCATCCCGCCCCTCTAGCCGACTGAGCACACGCACGCT
6101587 CGTTTCGTGGGTTGACTTAGGCAT
716 CGTTTCGTGGGTTGACTTAGGCAT
* * *
6101611 ACGGCATTGGGGTTTTAGCGATTGGGGGGGCGT-GGGGGATGTTCGCACATGGTGTGCGATGGGT
1 ACGGCATTGGGGTTCTAGCGATTGGGGGGGCGTGGGGGGATGTGCGCACATGATGTGCGATGGGT
*
6101675 GCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACTTTGAGAACTCACACCCCCTT
66 GCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTTGAGAACTCACACCCCCTT
* * * *
6101740 AAAGAGCATTTGATATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTAG-GACA
131 AAAGAGCATCTGAGAATTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAATAGTGACA
* * * *
6101804 CTTTTTTCAAATGGTCACAAAATCTTGTAGACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGC
195 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTATGCAAGC
* *
6101869 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAACATTTTAA
260 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAA
* * * * *
6101934 AAAAGCCCAAACCGCAAAAAGTTTCAAAAATCTTGAAAAATATATAACGAGTCGTCTTGCCATGA
325 AAAAGCCCAAACCGCAAAAAGTTTCAAAAATCTTAAAAAATAGAAAACAAGTCGTCTTACCATGA
* *
6101999 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
390 AACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCAT
6102064 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
455 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * ** *
6102129 TCACTCTGGCCGGCATCGTGCCCGCCCGCCCGCCCGCTTGTTTCGTTGGTTGGCTTAGGCATACG
520 TCACTCTGGCCGGCATAGTGCCCACACGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACG
* * * *
6102194 AGTTCATTCCCAGTCTAAGATCAAATCGGACTGAGGGTTGGGGCAGCAGGATCAGCAGCACACAG
585 AGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTAGGGCAACAGGATCAGCAGCACACAG
* * * *
6102259 AGGGGGACCCAGCCGATCCCCGACTTACGCATCCCGCCCCTCTAGCCGACTGAGTACACGCACGT
650 AGGGAGACCCAGCCAATCCCCGACTTACGCATCCCGCCCCTCTAGCCGACTGAGCACACGCACGC
*
6102324 TCGTTTCGTTGGTTGACTTAGGCAT
715 TCGTTTCGTGGGTTGACTTAGGCAT
6102349 A
1 A
6102350 TGGAGTTCAT
Statistics
Matches: 674, Mismatches: 64, Indels: 3
0.91 0.09 0.00
Matches are distributed among these distances:
738 637 0.95
739 37 0.05
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (739 bp):
ACGGCATTGGGGTTCTAGCGATTGGGGGGGCGTGGGGGGATGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTTGAGAACTCACACCCCCTT
AAAGAGCATCTGAGAATTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGTGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTATGCAAGCC
AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAA
AAAGCCCAAACCGCAAAAAGTTTCAAAAATCTTAAAAAATAGAAAACAAGTCGTCTTACCATGAA
ACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CACTCTGGCCGGCATAGTGCCCACACGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGA
GTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTAGGGCAACAGGATCAGCAGCACACAGA
GGGAGACCCAGCCAATCCCCGACTTACGCATCCCGCCCCTCTAGCCGACTGAGCACACGCACGCT
CGTTTCGTGGGTTGACTTAGGCAT
Found at i:6103679 original size:901 final size:897
Alignment explanation
Indices: 6101612--6110789 Score: 10850
Period size: 892 Copynumber: 10.4 Consensus size: 897
6101602 CTTAGGCATA
*** * * * *
6101612 CGGCATTGGGGTTTTAGCGATTGGGGGGG-CGTGGGGGATGTTCGCACATGGTGTGCGATGGGTG
1 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGG-TGTGCGCACATGATGTGTGATGGGTG
* * *
6101676 CTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACTTTGAGAACTCACACCCCCTTA
64 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * **
6101741 AAGAGCATTTGATATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTAGGACACT
129 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
6101806 TTTTTCAAATGGTCACAAAATCTTGTAGACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
194 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
6101871 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAACATTTTAAAA
259 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * * *
6101936 AAGCCCAAACCGCAAAAAGTTTCAAAAATCTTGAAAAATATATAACGAGTCGTCTTGCCATGAAA
324 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
6102001 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
389 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
6102066 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
454 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * ** * *
6102131 ACTCTGGCCGGCATCGTGCCCGCCCGCCCGCCCGCTTGTTTCGTTGGTTGGCTTAGGCATAC-GA
519 TCTCTGGCCGACGTAGTG-CTACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * *
6102195 GTTCATTCCCAGTCTAAGATCAAATCGGACTGAGGGTTGGGGCAGCAGGATCAGCAGCACACAGA
583 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGGCAGCACACAGA
* * * ** * *
6102260 GGGGGACCC-AGCCGATCCCCGACTTACGCATCCCGCCCCTCTAGCCGACTGAGTACACGCACGT
648 GGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGC
* * * * *
6102324 TCGTTTCGTTGGTTGACTTAGGCATATGGAGTTCATTCCCGGTCTAAGCAGACGGAGTTCATTCC
712 TCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * * *
6102389 CAGTCTAAGATCGAACCAGACCGAAGGTTG-CAGCACCACATGCTGGGTTCGGGCATGTGTTGGA
777 CAGTCTAAGATCGGACCAGA-CGAGGGTTGTGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
6102453 GCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCGA
840 GCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
* ** * *
6102511 CAGCATTGGGGTTCCATCGATCGGGGGGACCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTG
1 CGGCATTGGGGTTCCGGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGTGATGGGTG
*
6102576 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
64 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
6102641 AAGAGCATCTGAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGTGACACT
129 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-
* * * * *
6102706 TTTTTTCAAATGGTCCCAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTATGCAAGCC
193 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
6102771 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTAAAA
258 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
*
6102836 AAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
323 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
6102901 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
388 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
6102966 CAGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCCCGT
453 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
6103031 CTCTTTGGCCGACGTAGTGCCTACCC-CCCGCCCGTCCGGTCGTTTCATCGGTTGGCTTAGGCAT
518 CTCTCTGGCCGACGTAGTG-CTACCCGCCCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
6103095 ATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGTAAGATCGGTAGCAT
578 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGGCAGCAC
* * * * *
6103160 GCAGAGGGGGGACCCGGCCGATCCTCGGCTTGCGCAT-CCGCCCCTCTCGTCGACTGAGCGCCCG
643 ACAGA-GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCG
* *
6103224 CACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTC
707 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* ** * * *
6103289 TTTGTCAGTCTAAAATCGGACCAGATCGAGGGTTGTGACAGCACATGCTAGGCTCAGGCATGTGC
772 ATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGC
* * * * *
6103354 TGGTGCCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTGACAGG
836 TGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
*
6103416 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTTGTGCGCACATCATGTGTGATGGGTGC
1 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGG-TGTGCGCACATGATGTGTGATGGGTGC
* *
6103481 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACACCCCCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * * *
6103546 AGAGCATTTTAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATCGGGACACTA
130 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
6103611 TTTTCAAATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
6103675 AAAAAATACAAGGATTACATCTACCAAGTTTGGGGCCAAAACTACTTCCGAAAAAATTTTAAAAA
260 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAA
* *
6103740 AATCCCGAACCGTAAAAAGTTTTC-AAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAA
324 AATCCCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * * *
6103804 GCCTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACG
388 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
6103869 CAGAAATATGAAGATGTACCTAAGCCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCGT
453 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* ** * *
6103934 CTTTCTGGCCGGTGTAATGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
518 CTCTCTGGCCGACGTAGTG-CTACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * * * *** * **
6103999 AGTTCATTCCTAGTCTAAGATCGGATCAGACCAAGGGTTAC-AGTAGCAGGATCAATACCATGCA
582 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA-CAGTAGGATCGGCAGCACACA
* * * * * * * ** *
6104063 GAGGGGGACCCGATCGATCCCTGACTTGCACATCCCACCCTTTTGGCCGGTTGAGTGCCCGCACG
646 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACG
* * * * *
6104128 CTCGTTTCGTGGTTTGACTTAGGCGTATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTGATTC
711 CTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * * * ** *
6104193 TCAGTCTAATATCAGACCGGACCGATGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
776 CCAGTCTAAGATCGGACCAGA-CGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
6104258 GCCGTATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTAACCGG
840 GCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
* ** * *
6104316 CGGCATTGGGGTTTCGATGATCGAGGGGGCCGAGGGGGGTGTGTGCACATGATGTGTGATGGGTG
1 CGGCATTGGGGTTCCGGCGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGTGATGGGTG
* * * * *
6104381 CTGGTACTTGGCCGTTATGTTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCTTTA
64 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
6104446 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGATAGT
129 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
6104511 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
194 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
** * *
6104576 A-AAAAATTACAAGGATCACGTCTATAAAGTTTGGGTCCAAAA-TGCCTTCCAAAAAAATTTTAA
259 ACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAA
* * * * *
6104639 AAATTCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTGTTGCCATGA
322 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
6104704 AACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCAT
387 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * *
6104769 GCAGAAATAGGAAGATGTGCCTAAACCCACCTTCCA-CCTGATCTATCCACGACTTGCGCAT-CC
452 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGCTTGCGCATCCC
* * ** * * * * *
6104832 GCCTCTCTAGCCGACGTTA-TGCCCGCCCGCTCACCCACCTACTCATTTCATCGATTGGCTTAGG
516 GTCTCTCTGGCCGACG-TAGTG-CTACCCGC-C-CGC-CC-GCTCGTTTCGTCGGTTGGCTTAGG
* * ** * * * * * * *
6104896 CATATGGAGTTCATTCCTAGTCTAAGATTGGATCAGATCGAGGGTTGTGGCAGCAGGATTGACAG
575 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGGCAG
** * * *
6104961 CACACAGAGGGGGACCCGATTGATCCCCGGTTTGCGCATCCTGCCCCTCTTGCC-AGCTGAGCGC
640 CACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGC
* * *
6105025 CCGCACGCTCATTTCATGGGTTGACTTAGGCATAC-AGAGTTCATTCTCAGTCTAAG-AT-C-G-
704 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACGGA
* * *
6105085 G---------A--C-----T-GGA-C---CGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATG
768 GTTCATTCCCAGTCTAAGATCGGACCAGACGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATG
* * * ** * *
6105129 TGCTGGTGTCACATTTTTCTTCGTCGGAACACCATCGCCGGAGCATCGCCGGAGAACCTGACTGG
833 TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
*
6105194 CGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTG-G-GCACCATGATGTGCGATGGGTGC
1 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCA-CATGATGTGTGATGGGTGC
* *
6105256 TGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGGGAACTCACACCCCCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * ** *
6105321 AGAGCATTTCAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTGAAATTAGGACATTT
130 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
6105386 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCACAG-CA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA-TGCCA
*
6105450 ACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
259 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
** * * * *
6105515 AATATCAAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAAAAAATGAGTCGTCTTGCCATGAAA
324 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
6105580 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGC
389 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
*
6105645 AGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
454 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
6105710 TCTCTGG-C--C--AGCGC-A-GCGCCCGCCTGCTCGTTTCATCGATTGGCTTAGGCATACGGAG
519 TCTCTGGCCGACGTAGTGCTACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * **
6105768 TTCATT-CCAGTCTATGATCAGACCAGACTGAGGGTTGTGGCAGCAAGATCGGCAATACACAGAG
584 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGGCAGCACACAGAG
* * * ** * ** *
6105832 AGGGACCTCG-TCGATCCCTGGCTTGCGCATCCCATCCATCTGGCCGGTTGAGTGCCCGCACGCT
649 GGGGACC-CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCT
* *
6105896 CGTTTCGTAGGTTG----A--C-T-----G---------AG-----GCATACGGAGTTTATTCCC
713 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* *
6105935 AGTCTAAGATTGGACCAGACTGAGGGTTGTGACAGCACATGCTGGGCTCGTGCATGTGCTGGTGC
778 AGTCTAAGATCGGACCAGAC-GAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
** * *
6106000 CATATTTTTCTTCGCCAGGGCACCA---TC---G--TCG--GG-GAACCTGACCAG
842 CGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
* * * *
6106045 CGACATTGGGGTTCCAGCGATC-GGGGGGCCGGGGAGTGTGTGCACATGATGTGTGATGGGTGCT
1 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
*
6106109 GGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
6106174 GAGCATTTGAGATTTTACAAGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACATTTT
131 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
6106239 TTTCAAATGGTCACAGAATCTTGTACACTTCGAGTTTTTACCTGAATTGTTTTT-TGCATGCCAA
196 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAA
* * * * *
6106303 CAAAAATACGAGGATCACTTCTACCAAGTTTGAGGCCAAAAACCCCTTCCGAAAAAAATTTAAAA
260 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAAATTTTAAAA
* ** *
6106368 AATCTCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
324 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* ***
6106433 CTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGCAC
389 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
6106498 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
454 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
6106563 TCTCTAGCCGGCGTAGTG---CCCGCCCGCCCGCTCGTTTCGACGGTTGGCTTAGGCATACGGAG
519 TCTCTGGCCGACGTAGTGCTACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * *
6106625 TTCATTCCCAGTCTATGATCAGACCAGACCAAGGGTTCCGACAGTAGGATTGGTAACACACAGAG
584 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGGCAGCACACAGAG
* ** * *
6106690 GGGGACCCGGCCGATCCTTGGCTTGCGCATCCCGCCCCTCTGGCC-AGTTGAGCGCCTGCACGCT
649 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCT
* * *
6106754 CATTTCGTGGGTTGACTGAGGCATACGAAGTTCATTCCCAGTCTATG-AT-C-G-G---A----C
713 CGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * *
6106808 ---C---GA----A-C---CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGAGCCGGTGTC
778 AGTCTAAGATCGGACCAGACGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * *
6106859 GCATTTTTCTTCACCGGGGCATCATCGT-------T----GGAGAACCTGACCAG
843 GCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
* * ** *
6106903 CGACATTGGGGTTCTGTTGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGTGATGGGTGCT
1 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
* * *
6106968 GGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATGAAACCTTGAGAACTCACACCCCCTTAAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
6107033 AAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTT
131 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * **
6107098 TTTCAAATGGTCACAGAATCTTCTACACTTCGAGTTTTTACCTGAATTGTTTTGTTAATGCCAAC
196 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
*
6107163 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAA
261 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
** * * *
6107228 TCCCGAACCGTAAAAAGTTTCAAAAATCGCAAAAAATAAAAAATGAGTCATCTTGCCATGAAACT
326 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
6107293 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAACGGCATTGGCACGTAG
391 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
* * *
6107358 AAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACAGCTTGTGCATCCCGTCTC
456 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * * *
6107423 TTTGGCCGGCGTA--G-T----GCCTGCCCGTTGGTTTCGTCGGTTGGCTTAAGCATACAGAGTT
521 TCTGGCCGACGTAGTGCTACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * ** * *
6107481 CATTCCTAGTCTAAGATCGGACCAGACCGAGGGTCACGGCAGTCGGATCGGCAGCACACAGAGGG
586 CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGGCAGCACACAGAGGG
* * * * *
6107546 AGACCCGATCGATCCCCGGCTTGCACATCCCGCCTCTCTGGCCGACTGAGCGCCCGTACGCTCGT
651 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT
* * * *
6107611 TTTGTGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGACTAAGCATATGGAGTTCGTTCCCAG
716 TTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
** * *
6107675 TCTAAGATCGGACTGGACCGAGGGTTGTGACAGCACATGCTGGGCTCAGGCATGTGCTGGGGCCG
780 TCTAAGATCGGACCAGA-CGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * *
6107740 CATTTTTCCTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA
844 CATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
* * * *
6107794 CGGCATTGGGGTTCCGACGATCGGGGGGGCGGAGGGGGTGTGCGCACATGATGTGCGATCGGTGC
1 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGTGATGGGTGC
* *
6107859 TGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
6107924 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
130 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
6107989 TTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTG-GGAAGACCA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCA
* *
6108053 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACACCTTCCGAAAAAATTTTAAAA
259 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* *
6108118 AATCCCGAACCGTAAAAAGTTTTC-AAAATCATGAAAAATAGAAAACGAGTCGCCTTGCCATGAA
324 AATCCCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
6108182 ACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
388 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
6108247 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACTGCTTGCGCATCCCGT
453 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
6108312 CTCTCTGGTC-AGCGTA--G-TACCCGCCTGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGG
518 CTCTCTGGCCGA-CGTAGTGCTACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * **
6108373 AGTTCATCCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGTAGGATTGGTAGCACGTAG
582 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGGCAGCACACAG
* ** * * *
6108438 AGGGGGACCCGACCGATCCCCTGCTTGCGCATCCCGCCCCTCTGGCCGGTTGGGCACCTGCACGC
647 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGC
*
6108503 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
712 TCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * *
6108568 CAGTGTAAGATCAGACCAGACTGAGGGTTGT-AGCAGCACATGGTGGGCTCAGGCATGTGCTGGT
777 CAGTCTAAGATCGGACCAGAC-GAGGGTTGTGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * * * * *
6108632 GCCGTATTTTTCTTCGTCGGGACACCATTGTCGGAGCATCGTCGGAGAACCTAACCGA
840 GCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
* * * *
6108690 CGACATTGGGGTTTCGGCGATC-GGGGGGCCGGGGGGTCTGCGCACATGACGTGTGATGGGTGCT
1 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
* *
6108754 GGCACTTGGCCCTTATA-TGGACCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
66 GGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
6108818 AGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCTAAAATGCGGACAC-T
130 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
6108882 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* ** *
6108946 CAAAAATACAAGGATCACGTCAACCAAGTTTGGGGTAAAAAC-CTCTTCCGAAAAAATTTCAAAA
260 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CTTCCGAAAAAATTTTAAAA
* *
6109010 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
324 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
6109075 CTTCACGTGAAGGCTTAAGGGACAACTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
389 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * *
6109140 AGAAATTTGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCACGTCTTGCGCATCCCGTC
454 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
**
6109205 TCTCTGGCC-AGCGTAGTGCCCGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
519 TCTCTGGCCGA-CGTAGT--------G-CTACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* *
6109269 GCATACGGAGTTCATTCCCAATCTAAGATCAGACC-GAACCGAGGGTTGCGACAGTAGGATCAGC
574 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGACAGTAGGATCGGC
* * * * * * **
6109333 AGCACGCAGAGGGGGACCCGACCAATCCCTGACTTGCGTATCCCGCCCCTCTAGCCGGTTGAGCG
638 AGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* * *
6109398 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGTATACGGA
703 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGA
* *
6109463 GTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
768 GTTCATTCCCAGTCTAAGATCGGACCAGAC-GAGGGTTGTGACAGCACATGCTGGGCTCGGGCAT
* ** **
6109528 GTGCTGGTGTCGCATTTTTCTT-GCTC-GGGCACCATCACCGGAGCA-CAACGGAGAACCGATTG
832 GTGCTGGTGCCGCATTTTTCTTCGC-CGGGGCACCATCGTCGGAGCATCGCCGGAGAACC---TG
6109590 ACCCGG
893 A-CCGG
*** * * * * **** * *
6109596 CGGCATTGCCCCTCTTCCAGCGAT--GAGGGACC---GCGCCAACACA-ATGATGTGTCATGGGT
1 CGGCATTG---GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGT
* * *
6109655 GCTAG-ACTTGG-CCTTATATTGG-CCCCTAT-CATCATCAAACCTTGAGAACT-ACA-CCCCTT
63 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * **
6109714 -GAG-GCATTTGAGATTTTACA-G---GCTGCCAGTAGCCATTAAA-T-TATAAAAT-GGGACTT
128 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
6109770 TTTTTTC-AATGGTCAC---AT-ATGTAACACTT-AAGTTTTTAGCTGAA-TTTCTTGTGCATG-
193 TTTTTTCAAATGGTCACAAAATCTTGT-ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
*** * * * *
6109827 ------GGGT-CACGG-T--CG--GA-CAAGTTTGGGGTCACAACT-CTT-CG-AAAAATTTT-A
257 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* ** * * * *
6109875 AAAATCCCTAACCACAAAAAGTATCAAAATTTGTGAAAAATAGAAAACAAGTC--C-TG-CATGA
322 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
6109936 AAC-TCACGTGAAGG-TT-A-GGACCATTGTATG-A-TTACAAGCCATAAAAATGGCATTGGCAT
387 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
6109995 GTAAGAAATACTGAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
452 G-CAGAAATA-TG-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
6110060 CCGTCTCTCTGACCGACGTA--G-TACCCGCCCGCCCGCGCGTTTTG-CGGTTGGCTTAGGCATA
514 CCGTCTCTCTGGCCGACGTAGTGCTACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * ** *
6110121 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAACAGGATTGGCAGCACA
579 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGGCAGCACA
* * * * *
6110186 CAGAGGGGGA-CCGAGCCGATCCCCGACTTACGCATCCTGCCCTTCTGGCCGACTGAGTGCCCGC
644 CAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
* * * *
6110250 ACACTCGTTTCATGGGTTGACTTAGGCTTA-GAAAGTTCATTCCCAGTGTAAGCATACGGAGTTC
708 ACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AAGTTCATTCCCAGTCTAAGCATACGGAGTTC
** * * * * * *
6110314 ATTCCCAGTCTAAGATCGGA-TTGATCCAACGGTTGTGGCAGTAGATGCTGGGCTTGGGCATGTG
772 ATTCCCAGTCTAAGATCGGACCAGA--CGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTG
* * *
6110378 TTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC---G-A-------AGAACCTGACCGA
835 CTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
* * * * *
6110430 CGGCAATGGGGTTTCGACGATC-GGGGGGCCAGGGGGTGTGCACACATGATGTGTGATGGGTGCT
1 CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
* * *
6110494 GGTATTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTTGAGAACTCACACCCCCTTAAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
6110559 GAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
131 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
6110624 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
196 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
*
6110689 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAGAAA
261 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
**
6110754 TCCCGAACCACAAAAAGTTTCAAAAATTC-TGAAAAA
326 TCCCGAACCGTAAAAAGTTTCAAAAA-TCGTGAAAAA
6110790 AATACGGCAA
Statistics
Matches: 7157, Mismatches: 870, Indels: 528
0.84 0.10 0.06
Matches are distributed among these distances:
831 7 0.00
832 6 0.00
834 10 0.00
835 9 0.00
836 20 0.00
837 7 0.00
838 18 0.00
839 8 0.00
840 20 0.00
841 5 0.00
842 6 0.00
843 2 0.00
844 18 0.00
845 2 0.00
846 7 0.00
847 244 0.03
848 52 0.01
849 2 0.00
850 8 0.00
851 59 0.01
852 236 0.03
853 222 0.03
854 185 0.03
855 12 0.00
856 22 0.00
857 93 0.01
858 433 0.06
859 263 0.04
860 67 0.01
861 5 0.00
862 177 0.02
863 47 0.01
864 5 0.00
865 9 0.00
866 2 0.00
867 52 0.01
868 11 0.00
869 4 0.00
870 7 0.00
871 35 0.00
872 5 0.00
873 6 0.00
874 429 0.06
875 63 0.01
876 2 0.00
877 12 0.00
878 107 0.01
879 2 0.00
880 66 0.01
881 1 0.00
882 2 0.00
883 4 0.00
884 2 0.00
885 28 0.00
886 8 0.00
887 1 0.00
889 14 0.00
890 13 0.00
891 49 0.01
892 729 0.10
893 57 0.01
894 145 0.02
895 11 0.00
896 340 0.05
897 2 0.00
898 6 0.00
899 52 0.01
900 493 0.07
901 664 0.09
902 224 0.03
903 250 0.03
904 648 0.09
905 274 0.04
906 37 0.01
908 6 0.00
909 8 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGACGTAGTGCTACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATCGGCAGCACACAGAGGG
GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
CTAAGATCGGACCAGACGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
TTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG
Found at i:6107658 original size:26 final size:26
Alignment explanation
Indices: 6107628--6107680 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
6107618 GTTGACTTAG
6107628 GCATACAGAGTTCATTCCCAGACTAA
1 GCATACAGAGTTCATTCCCAGACTAA
** * *
6107654 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGACTAA
6107680 G
1 G
6107681 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGACTAA
Found at i:6108560 original size:26 final size:26
Alignment explanation
Indices: 6108524--6108576 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6108514 GTTGACTTAG
6108524 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
6108550 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6108576 G
1 G
6108577 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6109231 original size:4 final size:4
Alignment explanation
Indices: 6109222--6109247 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
6109212 CCAGCGTAGT
6109222 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
6109248 TCGTTTCGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:6109466 original size:26 final size:26
Alignment explanation
Indices: 6109430--6109480 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
6109420 TGACTTAGGC
*
6109430 ATACGGAGTTCATTCCTAGTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
6109456 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
6109481 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:6115967 original size:876 final size:874
Alignment explanation
Indices: 6113571--6117872 Score: 5667
Period size: 881 Copynumber: 4.9 Consensus size: 874
6113561 TTAGGCATAT
* * * * *
6113571 GGAGAACCTGACCGACGACAATAGGGTTCCAAC-ATCGGGGGGGCC-GGGGGGTGTGCGCACATG
1 GGAGAACCTGACAGACGGCATTAGGGTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGCACATG
* *
6113634 ATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
66 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
6113699 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTCTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
6113764 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTT-GCTGAATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
6113828 TTTTGTGCATGCCAACAAAAATTCAAGGATCACGTCTACCAA-TTTGGGGGCCAAAAATCCTTCC
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGG-CAAAACTCCTTTC
* * ** *
6113892 AAAAAATTTTGAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGTGTC
325 GAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
6113957 GTCTTGCCATAAAACTTCACGTG-AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
390 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*** *
6114021 TGGCATTGGCTTGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACGGC
455 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
6114086 TTGCGCATCCCGTCTATCTGGTCGGCATAGTGCCCGCCCACTCGCCCGCTTGCTCGTTTCGTCGG
520 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC-CGCTCGTTTCGTCGG
* * * * * *
6114151 TTGGCTTAGGCATACGAAGTTTATTCCCAGTCTAAGATCAGATCGGA-CTGAGGGCTGCGATAGC
584 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGATC-GAGGGTTGCG-CAGC
* * * * * *
6114215 AGGATGGGCAGCATGTAGA-GAGGGACCCGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTCGT
647 AGGATCGGCAGCACGTAGAGGA-GGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
6114279 CGACTGATCGC-CCGCACGCTCATTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCT
711 CGGCTGA--GCACCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
6114343 AAGATCAGACCAGG-CTGAGGGTTACGGTAGCACATGCTGGGCTCGAGCTTGTGCTGGTGCCACA
774 AAGACCAGACC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACA
*
6114407 TTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACC
838 TTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCACC
* * ** *
6114444 CGAGAACCTGACCGACGGCATT-GGTGTTCCGGTGATCGGGTG-GGCCGGAGGGGGTGTGCGCAA
1 GGAGAACCTGACAGACGGCATTAGG-GTTCCGACGATCGGG-GAGGCCGG-GGGGGTGTGCGCAC
* * *
6114507 ATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
63 ATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
6114572 GAACTCACACCCCCTT----A--A----AG-------AGGTTTGCTGCCAGTAGCCATTAAAGTG
128 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
6114620 TCTGAAATGGGGACACTTTTCTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
193 TCTGAAATGGGGACACTTTT-TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
6114685 ATTTTTTTGTGCATCCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
257 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCAAAACTCCT
* *
6114750 TTCGAAACAATTTTAAAAAATCCCAAACCGTTAAAAGTTTTAAAAATCGTGAAAAATAGAAAACG
322 TTCGAAA-AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
6114815 GGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
386 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
** *
6114880 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCA
451 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
6114945 CGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCGGCCCGCTCGCTCGTTTCG
516 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC-CGCTCGTTTCG
* * * * * *
6115010 TCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCCAAGATCGGATC-GAATTGAGGGTTGCAG
580 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTG-ATCGAGGGTTGC-G
* * * * * *
6115074 CAGTAGGATCAGCAGCACGCAGAGGAGGACCCGGTTGATCCCCGGCTTGTGCATCCCACCCCTCT
643 CAGCAGGATCGGCAGCACGTAGAGGAGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* **
6115139 GGCCGGCTGAGCGCCGCACGCTCATTTCGTGGGTTGACTTAGGGTTACGGAGTTCATTCCCAGTC
708 GGCCGGCTGAGCACCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
6115204 TAAGACC-GAACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAC
773 TAAGACCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCAC
* * * * *
6115268 ATATTTCTTCCCCGGGGCACCATCACCGGAGCATCATC
837 ATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCACC
* * ** *
6115306 GGAGAACTTCATC-GGTGGGATTAGGGTTCCGACGATCGGGGAGGCCGAGGGGGGTGTGCGCACA
1 GGAGAACCTGA-CAGACGGCATTAGGGTTCCGACGATCGGGGAGGCCG-GGGGGGTGTGCGCACA
* *
6115370 TGTTGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAG
64 TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
6115435 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT
129 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
6115500 CTGAAATGCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTC-AGTTTTTAGGTGAA
194 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAA
*
6115564 TTTTTTT-TGCATGCCAACAAAAATACAAGGTTCACGTCTACCAAGTTTGGGGGCAAAACTCCTT
258 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCAAAACTCCTT
* **** * * * *
6115628 TCGAAAAAGTTTAAAAAATTTTGAACCGCAAAGAGTTTCAAAAATCATGAAAAATAGAAAACAAG
323 TCGAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
6115693 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
388 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
6115758 AGTGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
453 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
6115823 GCTCGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGTCCGCTCGTTTCATC
518 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CCGCTCGTTTCGTC
* *
6115888 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTGAGATCAGACCTGATCGAGGGTTGCAGCAG
582 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGATCGAGGGTTGC-GCAG
* * * * *
6115953 CAGGATTGGCAGCACATAGAGGAGGACCCGGCCGATCCCCCCCGGCTTTCGCATCCCGCCCCTCA
646 CAGGATCGGCAGCACGTAGAGGAGGACCCGGTCGAT---CCCCGGCTTGCGCATCCCGCCCCTCT
* * * * *
6116018 GGCTGGCTGAGAACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGT
708 GGCCGGCTGAGCA-CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-
* *
6116083 CTAAGCATACGGAGTTCATTCCAATCTAAGATCGGACCAAACCGAGGGTTGCGGCAGCACATTCT
771 -T---C-TA---AG---A---C---C--AGACCGG-----ACCGAGGGTTGCGGCAGCACATGCT
* * * * **
6116148 GGGCTAGGGCATGTGTTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCACC
812 GGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCACC
* * ** * * * *
6116211 GGAGAACCTGACTGACGGCATTGGGGTTCCGGTGACCGAGGATGTCGGGGGGGTGTGCGCACATG
1 GGAGAACCTGACAGACGGCATTAGGGTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGCACATG
* *
6116276 ATGTGTGACGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
66 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
6116341 CTCACACCTCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
6116406 AAAATGGGGACACTTTTTTCATATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTG
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
6116471 TTTTGTGCATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCAAAACTCCTTTCG
* * * ** **
6116536 ACAAAATTTAAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
326 A-AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
6116601 GTCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAA
390 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
6116666 TGGCATTGGCACATAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCATGGC
455 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
*
6116731 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCAGCCTGCCAGCCCGCCCGGCCGCTCAATTT
520 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-G-C--CC-GCCCGCCC-GCCGCTC-GTTT
* * * ** * *
6116796 -GTCAGTTGGCTTAGGCATAC-GAGTTCATTCCTAGTCTAAGATCGGACCACACCGAGGGTTGGG
578 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGATCGAGGGTT-GC
* * * * *
6116859 GCAGCAGGATCGACATCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTC
642 GCAGCAGGATCGGCAGCACGTAGAGGAGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTC
* *
6116924 TGGCCGGTTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
707 TGGCCGGCTGAGCACC-GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * *
6116989 TCTAAGATCAGACCGGACCGAGGGTTGCGACAGCA-ATGCTGGGCTCAAGCATGTGTTGGTGCCA
771 TCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCA
* * * **
6117053 CATGTTTCTTCGTCGTGGCACCATCGCCAGAGCATCGTC
836 CATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCACC
* *
6117092 GGAGAACCTGACAGGCGGCATTGGGGTTCCGACGATCGGGGCA-GCCGGGGGGGTGTGCGCACAT
1 GGAGAACCTGACAGACGGCATTAGGGTTCCGACGATCGGGG-AGGCCGGGGGGGTGTGCGCACAT
6117156 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
65 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
6117221 ACTCACACGCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTC
130 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
6117286 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTCAATT
195 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
6117351 TTTTTGTGCATGCCAACAAAAATACAGGGATCACATCTACCAAGTTTGGGGGCCAAAACTCC-AT
260 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGG-CAAAACTCCTTT
* * *
6117415 CGAAAAAATTTTAAAAAATTCCAAACCTTAAAAAGTTTCACAAATCGTGAAAAATAGAAAACGAG
324 CG-AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* *
6117480 TCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAA
388 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
6117545 AATGGCATTGGCACACCGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
453 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
6117610 GCTTGCGCATCTCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATC
518 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CCGCTCGTTTCGTC
* *
6117675 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-GTGAACTGAGGGTTGCGACA
582 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGATC-GAGGGTTGCG-CA
* * * * * * * *
6117739 GTAGGATCAGCAGCACGTAGAGGGGGACTCGATCGATCCCCCGGTTTACGCATCCCGCCCCTTTG
645 GCAGGATCGGCAGCACGTAGAGGAGGACCCGGTCGAT-CCCCGGCTTGCGCATCCCGCCCCTCTG
* * ** * * *
6117804 GTCGGCTGAGCACTCGCATGCTTTTTTTGTCGGTTGACTTAGGCATATGGAGTTCATTCCCAGTC
709 GCCGGCTGAGCAC-CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
6117869 TAAG
773 TAAG
6117873 CATACGGAGT
Statistics
Matches: 3017, Mismatches: 318, Indels: 183
0.86 0.09 0.05
Matches are distributed among these distances:
859 45 0.01
860 36 0.01
861 68 0.02
862 340 0.11
863 268 0.09
864 3 0.00
866 3 0.00
868 1 0.00
870 1 0.00
872 5 0.00
873 24 0.01
874 10 0.00
875 6 0.00
876 440 0.15
877 125 0.04
878 129 0.04
879 84 0.03
880 46 0.02
881 553 0.18
882 30 0.01
885 1 0.00
886 2 0.00
887 6 0.00
889 3 0.00
892 1 0.00
895 2 0.00
898 3 0.00
900 4 0.00
901 3 0.00
902 1 0.00
903 2 0.00
904 201 0.07
905 171 0.06
906 215 0.07
907 81 0.03
908 1 0.00
910 67 0.02
911 32 0.01
912 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
GGAGAACCTGACAGACGGCATTAGGGTTCCGACGATCGGGGAGGCCGGGGGGGTGTGCGCACATG
ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCAAAACTCCTTTCG
AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTT
GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCTGATCGAGGGTTGCGCAGCAGGA
TCGGCAGCACGTAGAGGAGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
GAGCACCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCA
GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTT
CGCCGGGGCACCATCGCCAGAGCATCACC
Found at i:6116091 original size:26 final size:25
Alignment explanation
Indices: 6116061--6116112 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
6116051 GTTGACTTAG
*
6116061 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATT-CCAATCTAA
*
6116087 GCATACGGAGTTCATTCCAATCTAA
1 GCATACGAAGTTCATTCCAATCTAA
6116112 G
1 G
6116113 ATCGGACCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACGAAGTTCATTCCAATCTAA
Found at i:6117875 original size:26 final size:26
Alignment explanation
Indices: 6117846--6117898 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6117836 GTTGACTTAG
* *
6117846 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
*
6117872 GCATACGGAGTCCATTCCCTGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
6117898 G
1 G
6117899 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:6118241 original size:476 final size:475
Alignment explanation
Indices: 6117464--6118411 Score: 1362
Period size: 476 Copynumber: 2.0 Consensus size: 475
6117454 ACAAATCGTG
* * *
6117464 AAAAATAGAAAACGAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAAAAAACGAGTCGTCTTGTCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATCA
* * *
6117529 ATTTTCAAGCCATAAAAATGGCATTGGCACACCGAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACC
* * * *
6117594 ACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCC
131 ACCCTATCAATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCC
*
6117659 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGTGAA
196 ACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGTGAA
* * * * *
6117724 CTGAGGGTTGCGACAGTAGGATCAGCAGCACGTAGAGGGGGACTC-GATCGATCCCCCGGTTTAC
261 CCGAGGGTTGCGACAGCAGGATCAGCAACACGTAGAGGGGGACCCAGAT-GAT-CCCCGGCTTAC
** * ** * * * *
6117788 GCATCCCGCCCCTT-TGGTCGGCTGAGCACTCGCATGCTTTTTTTGTCGGTTGACTTAGGCATAT
324 GCATCCCG-CCCTTCTGCCCGGCTGAGCACTCGCACGCTCATTTCGTCGGTTGACCTAAGCATAC
** * * *
6117852 GGAGTTCATTCCCAGTCTAAGCATACGGAGTCCATTCCCTGTCTAAGATCGGACCGGACCGAGGG
388 GGAGTTCATTCCCAGTCTAAGCATACGGAGTCCATTCCCAATCTAAGATCAGACCGAACCGAGAG
*
6117917 TTGCGACAGCACATGCTGGGCTA
453 TTACGACAGCACATGCTGGGCTA
*
6117940 AAAAATAAAAAACGAGTCGTCTTTTCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATCA
1 AAAAATAAAAAACGAGTCGTCTTGTCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATCA
**
6118005 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACC
* * * *
6118070 ACCCTATCAATCCAAGGCTTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCTGCCCGTCC
131 ACCCTATCAATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCC
** * * *
6118135 ACCCGCTCGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTGAGATCAGA-TCGG
196 ACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGT-GA
* * * * * *
6118199 ACCGAGGGTTGCGGCAGCAGGATCGGCAACATGTATAGGGGGACCCAGGTGATCCTCGGCTTACG
260 ACCGAGGGTTGCGACAGCAGGATCAGCAACACGTAGAGGGGGACCCAGATGATCCCCGGCTTACG
*
6118264 CATCCCGCCCTTCTGCCCGGCTGAGCACTCGCACGCTCATTTCGTGGGTTGACCTAAGCATACGG
325 CATCCCGCCCTTCTGCCCGGCTGAGCACTCGCACGCTCATTTCGTCGGTTGACCTAAGCATACGG
* * *
6118329 AGTTCATTCCCAGTTTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGAGTT
390 AGTTCATTCCCAGTCTAAGCATACGGAGTCCATTCCCAATCTAAGATCAGACCGAACCGAGAGTT
6118394 ACGACAGCACATGCTGGG
455 ACGACAGCACATGCTGGG
6118412 GCTTGCGCAT
Statistics
Matches: 416, Mismatches: 53, Indels: 7
0.87 0.11 0.01
Matches are distributed among these distances:
474 5 0.01
475 134 0.32
476 275 0.66
477 2 0.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (475 bp):
AAAAATAAAAAACGAGTCGTCTTGTCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATCA
ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACC
ACCCTATCAATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCC
ACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAGTGAA
CCGAGGGTTGCGACAGCAGGATCAGCAACACGTAGAGGGGGACCCAGATGATCCCCGGCTTACGC
ATCCCGCCCTTCTGCCCGGCTGAGCACTCGCACGCTCATTTCGTCGGTTGACCTAAGCATACGGA
GTTCATTCCCAGTCTAAGCATACGGAGTCCATTCCCAATCTAAGATCAGACCGAACCGAGAGTTA
CGACAGCACATGCTGGGCTA
Found at i:6118373 original size:26 final size:26
Alignment explanation
Indices: 6118317--6118373 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
6118307 GTGGGTTGAC
*
6118317 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAAT
* *
6118343 TTAAGCATATGGAGTTCATTCCCAAT
1 CTAAGCATACGGAGTTCATTCCCAAT
6118369 CTAAG
1 CTAAG
6118374 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAAT
Found at i:6119690 original size:891 final size:894
Alignment explanation
Indices: 6117940--6125681 Score: 8640
Period size: 891 Copynumber: 8.6 Consensus size: 894
6117930 TGCTGGGCTA
* * ** * *
6117940 AAAAATAAAAAACGAGTCGTCTTTTCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATCA
1 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
6118005 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * *
6118070 ACCCTATCAATCCAAGGCTTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCTGCCCGTCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCC
* * * * * *
6118135 ACCCGCTCGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTGAGATCAGATCGGA
196 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* *
6118200 CCGAGGGTTGCGGCAGCAGGATCGGCAACATGTATAGGGGGACCCAGGT-GATCCTCGGCTTACG
261 CCGAGGGTTGCAG-AGCAGGATC-G--ACA-G---AGGGGGACCC-GGTCGATCCTCGGCTTGCG
* * * * * * *
6118264 CATCCCGCCCTTCTGCCCGGCTGAGCACTCGCACGCTCATTTCGTGGGTTGACCTAAGCATACGG
317 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * * * * *
6118329 AGTTCATTCCCAGTTTAAGCATATGGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGAGTT
382 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT
* * * * * * *
6118394 ACGACAGCACATGCTGGGGCTTGCG-CATTTGTTGGTGCCGCATTTTTCTTCGTCGGGGTACCAT
447 GCGGCAGCACATGCT-GGGCTCG-GACATGTGTTGGTGCCGTATTTTTCTTCGTCGAGGCACCAT
* * * * * *
6118458 -GTCGAAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCTGCGATCGGGGGTGCC-AGG
510 CGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG
* *
6118521 GG-GTACGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
575 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
6118585 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGTCAGTAC
640 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAC
* * * *
6118650 CTATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCA-AAAATCTTGAACAGTTTGTGT
705 C-ATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
* *
6118714 TTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
769 TTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * * *
6118779 CAAAAACGCCCTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAAGTTTAAAAAATCATA
833 CAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTTAAAAATCGTG
* * * *
6118842 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCGTTGTAAGA
1 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
6118907 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATTTAAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
6118972 ACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCC
* * **
6119037 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAA
196 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * *
6119102 CCGAGGGTTGC-G-GCA-GAT-G-CAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATCTCGCC
261 CCGAGGGTTGCAGAGCAGGATCGACAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCC
* * * * * *
6119162 CCTCTGGTCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAGTTAGGCATACGAAGTTAATTC
326 CCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* * * *
6119227 CCAGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCA
391 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCA
* * ** **
6119292 CATACTGGGCTCGGACATGTGCTGGTGCCACATTTTTTCTTCACCGAGGCACCATCGCCGGAGCA
456 CATGCTGGGCTCGGACATGTGTTGGTGCCGTA-TTTTTCTTCGTCGAGGCACCATCGCCGGAGCA
* * * * * *
6119357 TCACCTGAGAACCTGAACGGCAGCAATGGGGTT-TGGCGATCGGGGGGGCCGGGGGGTGTGCACA
520 TCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCA
*
6119421 CATGATGTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
585 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
6119486 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCTATTAAAGT
650 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACC-ATTAAAGT
* * *
6119551 GTCTAAAATGGGGACTCTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGTGTTTTTAGCTGA
714 GTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * * *
6119616 AATGTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTAAAAACTCCC
779 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCT
* * *
6119681 TCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTG
844 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTG
* *
6119732 AAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGA
1 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
6119797 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
6119862 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCACCCGCCT
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCC
*
6119927 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATCGGACCGGA
196 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * *
6119992 CCGAGGGTTGC-G-GCAGGAT-G-CAGAGGGGGACCTGGCCGATACTCGGCTTGTGCATCTCGCC
261 CCGAGGGTTGCAGAGCAGGATCGACAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCC
* * * *
6120053 CTTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGTATACGGAGTTCATTC
326 CCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
* * * * *
6120118 CCAGTGTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATCGAGGGTTGCAGTAGCA
391 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCA
* *
6120183 CATGCTGGGCTCGGGCATGTGTTGGTGCCACT-TTTTTCTTCGTCGAGGCACCAT---C---GC-
456 CATGCTGGGCTCGGACATGTGTTGGTGCC-GTATTTTTCTTCGTCGAGGCACCATCGCCGGAGCA
* * *
6120240 T----GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCCGGGGGGTCGGGGGGTGTGCGCA
520 TCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCA
*
6120301 CATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
585 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
**
6120366 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTATCAGTAGCCATTAAAGT
650 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA-CCATTAAAGT
* * ** *
6120431 GTCTAAAATGGAGACACTTTTGTCAAATGGTCACAAAATCTTGTACACTAAGAGTTTTTAGCTAA
714 GTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
6120496 ATTTTTTTGTGCATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAGAAA-TCC
779 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAAACTCC
* *
6120560 TTCCGAAAAAATTTTAAAAAATCCCAAACCGT-AAAAGATTTTGAAAATCGTG
843 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTTAAAAATCGTG
** *
6120612 AAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
1 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
6120677 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAACCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
6120742 ACCCTATCGATGCACGGCTTGCGCATCCTGTCTCTCTGGCCGTCGTAGT--------GCCTGCCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCC
* * * * * * * ** * *
6120799 GCTCGCTCATTTCGTTGGTTGGCTTATGTATACGAATTTCATTCCCAGTCTAAGATTAGATCAGA
196 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * *
6120864 CCGAGGGTTTCGATAGCAGGATCGGTAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGCGC
261 CCGAGGGTTGC-AGAGCAGGATC----G---ACAGAGGGGGACCCGGTCGATCCTCGGCTTGCGC
* * *
6120929 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACGGA
318 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
6120994 GTTCATTCCCAGTCTAAG-AT-C---G----------GTC------C--A---GACCGAGGGTTG
383 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTG
* *
6121033 CGGCAGCACATGCTGGGCTC-GAGCATGTGTTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCG
448 CGGCAGCACATGCTGGGCTCGGA-CATGTGTTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCG
** * * * **
6121097 CCGGAGTGTCGCCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGACGGGGCCGGGGGG
512 CCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGG
* * *
6121162 GTGTGCGCACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCGCTATCGCTCAT
576 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
6121227 CAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGC
641 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-AC
* *
6121292 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTT
705 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * * * * *
6121357 TTTAGCTGAATTGTTTTGTGCTTGCCAACAAAAATACAGGGATCACGTCTACTAGGTTTGGGGCC
770 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCA
*
6121422 AAAACTCCTTCCTAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTG
835 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTG
* * *
6121482 AAAAATAGAAAACTAGTCATCTTGCCATGAAGCTTCACGTGAAGGCTTAAGGGATCATTGTATGA
1 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
6121547 ATTTACAAGTCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAATCCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * * *
6121612 ACCCCATCGATCCACAGCTTGCACATCCCGTCTCTCTGGTCGACGTGGTGCCCGTCCGCCCGCCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCC
** *
6121677 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTATCAGTCTAAGATCGGACCAGA
196 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
** * * * * * *
6121742 CTAAGGGTTGCAGCAGTAGGATCGGCAACACGCAGAGGGAGACTCGATCGATCTTCGGCTTGTGG
261 CCGAGGGTTGCAG-AGCAGGATC-G--ACA-G-AG-GGG-GACCCGGTCGATCCTCGGCTTGCGC
* * *
6121807 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGAA
318 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* * *
6121872 GTTCATTCCAAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTG
383 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTG
* * ** * *
6121937 CGGCAGCACATGCTGTGCTC-GAGCATATGTTGGTGCCGTATTTTTCTTCACCGGGGCACTATCG
448 CGGCAGCACATGCTGGGCTCGGA-CATGTGTTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCG
* * ** * * *
6122001 CTGGAGCATCACCGAAGAACCTGGTCGACGGCATTAGGGTTCCGGCGATCGGGGTGGCCGGGGGG
512 CCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGG
*
6122066 GTGTGCGCACATTATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
576 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
6122131 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGTAGC
641 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA-C
* * *
6122196 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATATTGTACACTTCGAGTT
705 CATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* *
6122261 TTTAGGTGAA-TTTTTTGTGCATGCCAACAAAAGA-ACAAGGATCACGTCTACCAAGTTTGGGGT
770 TTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-
* * * * *
6122324 C-AAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACAGCAAAAAGTTTTGAAAATCCTG
833 CAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTG
* * * *
6122385 AAAAATAGAAAACAAGTCATCTTGCTATGAAACTTCATGTGAAGGCTTAAGGAACCATTGTATGA
1 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
6122450 ATTTACAAGCAATAAAAATGGCATTGGCATGCAGAAATATTAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * ** *
6122515 ACCCTATCGATCCATGGCTTACGCATCCCGTCTCTCTGG-C--CA-A-----CG-TAG--TGCCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCC
** * * **
6122568 GCCCGCTCGTTTCGTCGGTTGGCTTCCGCATACGGAGTTCATTCCCAGTCTAAGTTCGAACCAAA
196 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
** ** *** * * *
6122633 TTGAGGGTTGTGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGTTTGTGC
261 CCGAGGGTTGCAG-AGCAGGA-T--C-G-A--CAGAGGGGGACCCGGTCGATCCTCGGCTTGCGC
* * * *
6122698 ATCCTGCCCCTCTAGCCGGCTGAGCACCCGCACGCTTGTTTTATGGGTTGACTTAGGCATACGGA
318 ATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* * * *
6122763 GTTCATT-CCAGTCTAAGCATACCGAGTTCATTCCCAGTGTAAGATC-GTACCGGATCGAGGGTT
383 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCGGACCGAGGGTT
* * * * * *
6122826 GCAGCAGCACATGCTGGGCTAGGGA-ATGTGCTGGTACCATATTTTTGTTCGTCG-GG-----T-
447 GCGGCAGCACATGCTGGGCT-CGGACATGTGTTGGTGCCGTATTTTTCTTCGTCGAGGCACCATC
* *** * * *
6122883 --C--ACCATCACCGGAGAACCTGACCGATAGCATTGGGGTTCCGGTGATCGAGGGGCCCGGGGG
511 GCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGG
* *
6122944 GGTGTCCGCACATGATGTGCGATGGGTGCTGGTCCTTGGCCCTTATATTGGCCCCCTATCCCTCA
575 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
6123009 TCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAC
640 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA-
* *
6123074 CCATTAAAGTGTCAGAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAG
704 CCATTAAAGTGTC-TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
6123139 TTTTTACCTGAATTTTTTTTTACATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
768 TTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
6123204 CCACAACTTCTTCCAAAAAAATTTTGTGTATGCCAACAAAAATAGGGGGATCACGTCTACCAGGT
833 CAAAAACTCCTTCCGAAAAAA---T-T-T-T--------AAA-A-----A--A--TC--CC----
* *
6123269 TTGGGCCCAAAAATTCCTTTGAAAAAATTTTAAAAAATCTTGAACCGTAAAATG
868 ----G------AA--CC-GT-AAAAAGTTTT-AAAAA---T----CG-----TG
* * *
6123323 TTTCAAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTACACGTAAAGGCTTAAG
1 ----AAAAA---T-------AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
6123388 CGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCC
52 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
* * * * *
6123453 TAAACCCACCTACCACCTTATCGATCCACGGGTTGCGCACCCCGTCTCTCTGGCCGGCTTTGTGC
117 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGC
* * *
6123518 CCGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGACATACGGAGTTCATTCCCAGTCT
182 CCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * ** *
6123583 AAGATCAGATCGAACCGAGGGTTGCGACAGCAGGATCGACAGCATGCATAAGGGGTCTTGATCGA
247 AAGATCGGACCGGACCGAGGGTTGC-AGAGCAGGATCGACAG-A-G-----GGGGACCCGGTCGA
* * * * *
6123648 TCCCCGGCTTGCGCATCCCAG-CCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTTATGGGTTG
304 TCCTCGGCTTGCGCATCCC-GCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTG
6123712 ACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--CAG-----G--C---
368 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * *
6123752 -CGGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATATGCTGGTGCTGTATTTTTCTTTG
433 TCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGACATGTGTTGGTGCCGTATTTTTCTTCG
* *
6123816 CCG-GG-------G-C--AGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-
498 TCGAGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCG
* * *
6123869 GGGTGGCCGGAGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGC
563 GGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
6123934 CCCCTATCCCTCATCAAAGCTCGAGAACTCACATCCCCTTAAAGAGAATTTGAGATTTTACAGGT
627 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
6123999 TTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATATT
692 TTGCTGCCAGTA-CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
6124064 GTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAACACAAGGATCATGTCTA
756 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* * * * * *
6124128 CCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAAATTT-AAAAATCTCGAACC-TAAAAAGTTTCA
821 CCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTA
6124191 AAAATCGTG
886 AAAATCGTG
* *
6124200 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTTTATGA
1 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** *
6124265 ATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * *
6124330 ACCCTATCGATCCACAGCTTGCACATCCCGTCTCTCTGGCCGGCGTCGTGCCCGCCTGCCTGCCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCC
* *
6124395 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGTGTTCATTTCCAGTCTAAGATCGGACCGGA
196 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * *
6124460 CCGAGGGTTGCGATAGTAGTATCGATAGCACATAGAGGGGGACCCGG-CTGATCCTCAGCTTACG
261 CCGAGGGTTGC---AG-AGCA-GGATCG-AC--AGAGGGGGACCCGGTC-GATCCTCGGCTTGCG
* * * * *
6124524 CATCCCACCCCTCTGGCCGGTTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGG
317 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* * * *
6124589 AGTTCATTCCCAGTCTAAGCGTACAGAGTTCATTCCCAGTCTAAGATCAGAGCAGACCGAGGGTT
382 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTT
* * * * * *
6124654 GCGGCAGCACATGCCGGGCTGGGGCATGTGTTTGTGTCGTATTTTTCTTCGTCG-CG-A-CA---
447 GCGGCAGCACATGCTGGGCTCGGACATGTGTTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCG
* *
6124713 -C----CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGAGGGCCGGGGGG
512 CCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC--GGGG
* * *
6124773 GGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCCTATCCCTCA
575 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * ** * *
6124838 TCAAACCTTGAGAACTTACACCCCTTTAAATTGCATTTGAGATTTTACAGGTTTGCTACCAGTGG
640 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-A
* *
6124903 CCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
704 CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
** * *
6124968 TTTTAGCTGAATTTTTTTGAACATGCCAATAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGC
769 TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-
* * * *
6125033 CAAAAA-TCCTTCTGAAAAAATTTTAAAAAATCCCGACCCGTAAAAAGTTTGAAAAATCATG
833 CAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTG
* *
6125094 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGA
1 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* * **
6125159 ATTTACAAGCCACAAAAAGGGTGTTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
66 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * *
6125224 ACCCTATCGATCCACGACTTGCGCATCCGGTCTCTCTGGCCGACGA-AATGCTCGCCCACCCGCC
131 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC-ATAGTGCCCGCCCGCCCGCC
* * * * * * * ** ** *
6125288 TGCCTGTTCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATTTAAGATCAAATTGA
195 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * * * * ** *
6125353 ATCGAGGGTTGCGGTTGTAGGATCGGCAGCACACAGATGGGGACCCGACCCATCCTCGGCTTGCG
260 ACCGAGGGTTGCAG-AGCAGGAT---C-G---ACAGAGGGGGACCCGGTCGATCCTCGGCTTGCG
* ** * * *
6125418 CATCCCGGCCCTCTGGCTAGCTGAGCACCCGTAAGCTCGTTTCATGGGTTGACTTAAGCATACGG
317 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
6125483 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGGACCGA
382 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC--A---GATCGGACCGA
* * * * * * * *
6125548 TGGTTGCGGCTGCACATACCGGGCTCGGGCATTTGTTGGTGCCGTATGTTTCTTCGTCGGGGCAC
442 GGGTTGCGGCAGCACATGCTGGGCTCGGACATGTGTTGGTGCCGTATTTTTCTTCGTCGAGGCAC
* * * *
6125613 CATCACCGGAGCATCATCGGAGAACCTGACCGGCGGCATTTGGGTTCCAGCGATCGGGGGGGCCG
507 CATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG
6125678 GGGG
572 GGGG
6125682 TGGACCGAGG
Statistics
Matches: 5858, Mismatches: 720, Indels: 518
0.83 0.10 0.07
Matches are distributed among these distances:
857 1 0.00
858 64 0.01
861 2 0.00
862 1 0.00
863 328 0.06
864 1 0.00
865 3 0.00
866 3 0.00
867 4 0.00
868 4 0.00
869 51 0.01
870 451 0.08
871 5 0.00
872 70 0.01
873 5 0.00
874 3 0.00
875 10 0.00
876 3 0.00
877 6 0.00
878 176 0.03
879 217 0.04
880 531 0.09
881 66 0.01
882 3 0.00
883 5 0.00
884 106 0.02
885 2 0.00
886 2 0.00
887 3 0.00
888 23 0.00
889 279 0.05
890 440 0.08
891 804 0.14
892 83 0.01
893 28 0.00
894 381 0.07
895 8 0.00
896 6 0.00
898 3 0.00
899 64 0.01
900 2 0.00
901 5 0.00
902 245 0.04
903 250 0.04
904 316 0.05
905 2 0.00
906 1 0.00
907 2 0.00
908 5 0.00
909 1 0.00
910 48 0.01
911 2 0.00
913 1 0.00
915 2 0.00
920 1 0.00
921 4 0.00
923 1 0.00
925 9 0.00
926 4 0.00
929 1 0.00
930 1 0.00
931 1 0.00
932 1 0.00
933 1 0.00
936 52 0.01
937 73 0.01
938 143 0.02
939 95 0.02
942 5 0.00
943 1 0.00
945 2 0.00
950 3 0.00
952 148 0.03
953 2 0.00
955 1 0.00
956 2 0.00
957 3 0.00
958 1 0.00
959 4 0.00
960 2 0.00
961 3 0.00
962 1 0.00
963 2 0.00
964 159 0.03
965 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCC
GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
CCGAGGGTTGCAGAGCAGGATCGACAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCC
CCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCA
CATGCTGGGCTCGGACATGTGTTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGCCGGAGCAT
CACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCATTAAAGTGT
CTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTC
CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTG
Found at i:6120133 original size:26 final size:26
Alignment explanation
Indices: 6120103--6120153 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
6120093 TGACTTAGGT
*
6120103 ATACGGAGTTCATTCCCAGTGTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
6120129 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
6120154 ATTAGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:6121900 original size:26 final size:26
Alignment explanation
Indices: 6121863--6121915 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6121853 GTTGACTTAT
6121863 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
* *
6121889 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
6121915 G
1 G
6121916 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:6122789 original size:25 final size:26
Alignment explanation
Indices: 6122754--6122805 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
6122744 GTTGACTTAG
*
6122754 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
*
6122779 GCATACCGAGTTCATTCCCAGTGTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
6122805 G
1 G
6122806 ATCGTACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:6125502 original size:26 final size:26
Alignment explanation
Indices: 6125472--6125527 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
6125462 TGGGTTGACT
6125472 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
6125498 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
6125524 TAAG
1 TAAG
6125528 ATCGGATCGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:6126549 original size:26 final size:26
Alignment explanation
Indices: 6126520--6126572 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
6126510 GTTGACTTAG
*
6126520 GCATAC-AGAGTTTATTCCCAGTATAA
1 GCATACGA-AGTTCATTCCCAGTATAA
*
6126546 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTATAA
6126572 G
1 G
6126573 ATAGAACTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:6127603 original size:26 final size:26
Alignment explanation
Indices: 6127573--6127625 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6127563 GTTGACTTAG
*
6127573 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
6127599 GCATATAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6127625 G
1 G
6127626 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6128651 original size:26 final size:26
Alignment explanation
Indices: 6128620--6128672 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6128610 GTTGACTTAG
6128620 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
6128646 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
6128672 G
1 G
6128673 ATAGAACTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:6130107 original size:905 final size:902
Alignment explanation
Indices: 6127781--6131128 Score: 4605
Period size: 905 Copynumber: 3.7 Consensus size: 902
6127771 GGCCGGGGTG
* * *
6127781 GACCGAGGGTTATGGCAGCAC-TGCTGGGCTCGGGCATGTGTTGGTGCCACTTTTTTCTTCATCG
1 GACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACTTTTTTCTTCGTCG
* * *
6127845 GGGCACCATCGTCGGAGCATCGTCGAAGAACCTGACCGACGACATTGGGGTTCCGACGATCG-GG
66 GGGCACCATCGTCAGAGCATCGCCGAAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGAGG
6127909 GGGTCGGGGGGGTGTACGCACATGATGTG-TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
131 GGGTCGGGGGGGTGTACGCACATGATGTGCT-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
6127973 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGTGCATTTGAGATTATACAGGTTT
195 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
6128038 GCTGCCAGTAGCCATTAAAGTGACTGAAATTGGGACACTTTTTTCAAATGGTCAC-AAATCTTGT
260 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * *
6128102 ACACTTTGAGTTTTTTGCCGAATTGTTTTGCGCATGCCAACAAAAATACAAGGATCACGTCTACC
325 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
6128167 AAGTTTGGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
390 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
* * *
6128232 AATCGTGAAAAATAAAAAACGAGTGGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGTGG-CCA
455 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG-GGACCA
* * *
6128296 CTGTATGAATTTACAAGCCAAAAAAATGTCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
519 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* *
6128361 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCC
584 CACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * * *
6128426 GCTCACCC-ACGAGCTCATTTCGTCGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAGGAT
649 GCCCGCCCGAC-CGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* ** *
6128490 CAGACCAGATCGAGGGTTACGGTAGCAAGATC-AGCAGCACACAGAGGGGGACCCGACTGATCCC
713 CAGACCAGATCGAGGGTTGCGGTAGCAAGATCGA-CAGCACGTAGAGGGGGACCCGACCGATCCC
* * * * * *
6128554 CGGTTTGTGCATCCTGCCCCTCTGGTCGGCTGAGCACCGGCACGATCGTTTCATTGGTTGACTTA
777 C-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCA-TGGTTGACTTA
* * * * **
6128619 GGCATACGGAGTTCATTCCCAGTATAAGCATACGGAGTTCATTCCCAGTCTAAGATAGAACTT
840 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCA
* * * *
6128682 GACCGAGGGTTACGGCAGCAGATGTTGGGCTCGAGCATGTGTTGGTGCCACTTTTTTCTTCGTCG
1 GACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACTTTTTTCTTCGTCG
* * *
6128747 AGGCACCATCGTCAGAGCATCGTCGAAGAACCTGACCGACGACATTGGGGTTTCGGCGATCGAGG
66 GGGCACCATCGTCAGAGCATCGCCGAAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGAGG
* * * * * *
6128812 GAGCCGGGGGGCTTTACGCACATGATGTGC----GATG--GGTAC-TGG----TA-CTTGGCCCC
131 GGGTCGGGGGGGTGTACGCACATGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * * * *
6128865 CTATTCATCATCAAACCTCGAGAACTCACACCCCCATGAAGAGCATTCGAGATTTTACAGGTTTA
196 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
6128930 CTGGCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
261 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
6128995 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
326 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * * *
6129060 AGTTTGGGGCCAAACCTCCTTCTGAAAAAGTTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAA
391 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
6129125 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
456 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
6129190 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCA
521 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * ** * *
6129255 CCTACCACCCTATCGATCCACGGCTTGTGCATCCTGCCTCTCTGGCCGATGTACTGCCCACCCGC
586 CCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * ** * * *
6129320 CCGCCCGTCCGCTCATTTCATCGGTTATCTTAGGCATGCGGATTTCATTCCCAGTCTAAGATCTG
651 CCGCCCGACCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* *
6129385 ACCAAATCGAGGGTTGCGGTAGCAAGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCTGAC
716 ACCAGATCGAGGGTTGCGGTAGCAAGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCG-C
* * * *
6129450 TTGCGCACCCCGCCCCTCTGACCGGCTGAGCACCCGCACGCTTGTTTCATCGGTTGATTTAGGCA
780 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCAT-GGTTGACTTAGGCA
* * *
6129515 TACTGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCCAAGATCGGACCA
844 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCA
* * *
6129574 GACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-GTATTTTTCTTCGTC
1 GACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACT-TTTTTCTTCGTC
* *
6129638 GGGGCACCATCGTCAGAGCATCGCCGGACA-AACCTGACCGACCG-CATTGTGGTTCTGGCGATC
65 GGGGCACCATCGTCAGAGCATCGCC-GA-AGAACCTGACCGA-CGACATTGGGGTTCCGGCGATC
*
6129701 -AGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTG
127 GA-GGGGGTCGGGGGGGTGTACGCACATGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTG
*
6129765 GCCCCCTATCCCTCATCGAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
191 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
6129830 GTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAATTGGTCACAAAATC
256 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
6129895 TTGTACACTTCAAGCTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
321 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
6129960 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCTCGAACCGCAAAAAGTTT
386 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
** * * * * *
6130025 GGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTGACATGAAGGCTTATGGGT
451 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
6130090 CCATTGTATGAATTTACAAGCCATAAAAATGGCATCAGAACAT--AGAAATATGAAGATGTGCCT
516 CCATTGTATGAATTTACAAGCCATAAAAATGGCAT-TG-GCATGCAGAAATATGAAGATGTGCCT
* * * * * *
6130153 AAACACACCTATCACCCTATCGATCCATGGCTTGTGCATCCCATCTCTCTGGTCGGCGTAGTGCT
579 AAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * * * *
6130218 CGCCCGCCTGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTA
644 CGCCCGCCCGCCCGACCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
6130283 AGATCAGACCAGATCGAGGGTTGCAGCAGCAAGATCGGCAGCACGTAGAGGGGGACCCGACCGAT
709 AGATCAGACCAGATCGAGGGTTGCGGTAGCAAGATCGACAGCACGTAGAGGGGGACCCGACCGAT
* * * * *
6130348 CCCCCGCTTGCGCATCCCACCCCTCTGGCCGACTGAGTACCCGTACGCTCGTTTCATGCATTGAC
774 -CCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATG-GTTGAC
* * *
6130413 TTAGGCAAACGGAGTTCATTCCCAGTCTAAGTATATGGAGTTCATTCCAAGTCTAAGATCGGACC
837 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGACC
6130478 A
902 A
* * * * * *
6130479 GACCGAGGGTTACGACAGCACATGCGTTGGTTTGGTGCATGTGTTGGTACCGCATTTTTCTTCGT
1 GACCGAGGGTTACGACAGCACATGC-TGGGCTCGG-GCATGTGTTGGTGCCACTTTTTTCTTCGT
* * * * * * * * *
6130544 CGGGCCACCATCGCCGGAGCATCGCCGGAGAACATGACTGACGGCATTGAGGTTCCGGTGATCGA
64 CGGGGCACCATCGTCAGAGCATCGCCGAAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGA
* * * * *
6130609 GGGGG-C-CGGGGGTGTGCGCACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATGTTGGCC
129 GGGGGTCGGGGGGGTGTACGCACATGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * **
6130672 CTCTATCCCTCATCAAACCTTGAGAACTTGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
194 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
6130737 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
259 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
6130802 TACACTTTC-AGTTTTTAGCTGAATTCTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
324 TACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * * **
6130866 CCAAGTTTGGGACCAAAACTCCTTCCGAAAAAAGTTGAAAAAATCCCGAACCACAAAAAGTTTTG
388 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* *
6130931 AAAATCGTGAAAAATAGAAAACGAGTCATCTTG-CATTGAAACTTCTCGTGAAGGCTTAAGGGAC
453 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGAC
* * **
6130995 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATGGGAAGATGTGCCTAAA
517 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * * *
6131060 CCCAGCTACCACCCTATCGATCCACAGCTTGCT-CATCCCGTCTCTCTGGCTGGCGTAGTGTCCA
582 CCCACCTACCACCCTATCGATCCACGGCTTG-TGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
6131124 CCCGC
646 CCCGC
6131129 TTGTGTCATC
Statistics
Matches: 2159, Mismatches: 247, Indels: 79
0.87 0.10 0.03
Matches are distributed among these distances:
891 119 0.06
892 596 0.28
893 58 0.03
894 3 0.00
896 3 0.00
897 8 0.00
899 8 0.00
900 3 0.00
901 19 0.01
902 100 0.05
903 30 0.01
904 456 0.21
905 663 0.31
906 42 0.02
907 51 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACTTTTTTCTTCGTCG
GGGCACCATCGTCAGAGCATCGCCGAAGAACCTGACCGACGACATTGGGGTTCCGGCGATCGAGG
GGGTCGGGGGGGTGTACGCACATGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
CCGCCCGACCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCAGATCGAGGGTTGCGGTAGCAAGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGCT
TGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCA
Found at i:6131734 original size:635 final size:635
Alignment explanation
Indices: 6130515--6131754 Score: 2115
Period size: 635 Copynumber: 2.0 Consensus size: 635
6130505 TTGGTTTGGT
*
6130515 GCATGTGTTGGTACCGCATTTTTCTTCGTCGGGCCACCATCGCCGGAGCATCGCCGGAGAACATG
1 GCATGTGTTGGTACCGCATTTTTCTTCATCGGGCCACCATCGCCGGAGCATCGCCGGAGAACATG
*
6130580 ACTGACGGCATTGAGGTTCCGGTGATCGAGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGG
66 ACTGACGGCATTGAGGTTCCGGTGATCGAGGGGGCCGGGGGTGTGCACACATGATGTGCGATGGG
*
6130645 AGCTGGTACTTGGCCCTTATGTTGGCCCTCTATCCCTCATCAAACCTTGAGAACTTGCACCCCCT
131 AGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTTGCACCCCCT
6130710 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
196 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
6130775 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTCAGTTTTTAGCTGAATTCTTTTGTGCATGC
261 CTTTTTTCAAATGGTAACAAAATCTTGTACACTTTCAGTTTTTAGCTCAATTCTTTTGTGCATGC
6130840 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAAGTTGAA
326 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAAGTTGAA
* **
6130905 AAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCATTGA
391 AAAATCCCAAACCACAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCATTGA
* *
6130970 AACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
456 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * *
6131035 GCAAAAATGGGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACAGCTTGCTCATCCCG
521 GCAAAAATAGGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACAGCTTGCGCATCCCG
* *
6131100 TCTCTCTGGCTGGCGTAGTGTCCACCCGCTTGTGTCATCGGTTGGCTGAG
586 TCTCTCTGGCCGGCATAGTGTCCACCCGCTTGTGTCATCGGTTGGCTGAG
* *
6131150 GCATGTGTTGGTACCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACATG
1 GCATGTGTTGGTACCGCATTTTTCTTCATCGGGCCACCATCGCCGGAGCATCGCCGGAGAACATG
*
6131215 ACTGACGGCATTGGGGTTCCGGTGATCGAGGGGGCCGGGGGTGTGCACACATGATGTGCGATGGG
66 ACTGACGGCATTGAGGTTCCGGTGATCGAGGGGGCCGGGGGTGTGCACACATGATGTGCGATGGG
6131280 AGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTTGCACCCCCT
131 AGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTTGCACCCCCT
6131345 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
196 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
6131410 CTTTTTTTAAATGGTAACAAAATCTTGTACACTTTGAGTTTTTAGCTCAATTTTTTTGTGCATGC
261 CTTTTTTCAAATGGTAACAAAATCTTGTACACTTTCAGTTTTTAGCTCAATTCTTTTGTGCATGC
* * * ** * *
6131475 CAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAA
326 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAAGTTGAA
** * *
6131540 AAAATCCCAAACTGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCA-TG
391 AAAATCCCAAACCACAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATCTTG-CATTG
6131604 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
455 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
6131669 C-CTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCC
520 CGC-AAAAATAGGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACAGCTTGCGCATCC
*
6131733 CGTCTCTGTGGCCGGCATAGTG
584 CGTCTCTCTGGCCGGCATAGTG
6131755 CCCGCCTACC
Statistics
Matches: 566, Mismatches: 37, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
634 1 0.00
635 563 0.99
636 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Consensus pattern (635 bp):
GCATGTGTTGGTACCGCATTTTTCTTCATCGGGCCACCATCGCCGGAGCATCGCCGGAGAACATG
ACTGACGGCATTGAGGTTCCGGTGATCGAGGGGGCCGGGGGTGTGCACACATGATGTGCGATGGG
AGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTTGCACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTAACAAAATCTTGTACACTTTCAGTTTTTAGCTCAATTCTTTTGTGCATGC
CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAAGTTGAA
AAAATCCCAAACCACAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCATTGA
AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GCAAAAATAGGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACAGCTTGCGCATCCCG
TCTCTCTGGCCGGCATAGTGTCCACCCGCTTGTGTCATCGGTTGGCTGAG
Found at i:6131983 original size:26 final size:26
Alignment explanation
Indices: 6131947--6131999 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6131937 GTTGACTTAG
*
6131947 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6131973 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6131999 G
1 G
6132000 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6132889 original size:26 final size:26
Alignment explanation
Indices: 6132859--6132937 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
6132849 GTTGACTTAG
6132859 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
6132885 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
6132911 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACGGAA-TTCATTCCCAGTCTAA
6132937 G
1 G
6132938 ATCCGATCAT
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
25 3 0.06
26 49 0.94
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:6133335 original size:16 final size:16
Alignment explanation
Indices: 6133316--6133352 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
6133306 CAACAAATAT
6133316 ACAAGGATCACGTCTA
1 ACAAGGATCACGTCTA
6133332 ACAAGGATCACGTCTA
1 ACAAGGATCACGTCTA
*
6133348 CCAAG
1 ACAAG
6133353 TTTGGGGCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.38, C:0.27, G:0.19, T:0.16
Consensus pattern (16 bp):
ACAAGGATCACGTCTA
Found at i:6134864 original size:900 final size:898
Alignment explanation
Indices: 6131150--6156984 Score: 28866
Period size: 900 Copynumber: 28.8 Consensus size: 898
6131140 GTTGGCTGAG
* * * * *
6131150 GCATGTGTTGGTACCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTCGGAGAACATG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * ** *
6131215 ACTGACGGCATTGGGGTTCCGGTGATCGAGGGGGCC--GGGGGTGTGCACACATGATGTGCGATG
66 ACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* * * **
6131278 GGAGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTTGCACCCC
130 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
6131343 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
195 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
6131408 CACTTTTTTTAAATGGTAACAAAATCTTGTACACTTTGAGTTTTTAGCTCAATTTTTTTGTGCAT
260 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
6131473 GCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTT
325 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
* * * * * *
6131538 AAAAAATCCCAAACTGCAAAAAGTTTCCAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCAT
390 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
6131603 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
455 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
6131668 AC-CTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATC
520 ACGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
6131732 CCGTCTCTGTGGCCGGCATAGTGCCCGCCTACCCG--C-C-CATTTCGTCAGTTGGCTTAGGCAT
584 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * * * * * **
6131793 ACGGAGGTCATTCCCAATCTAAGATTGAACTGGATCGAAGGTTGTGGCAGTAGGATCGATAGCAC
649 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * ** *
6131858 GCAGAGAGGGACCC-ACCGATCCCCAGCTTGCATATCCCGCCCCTCTGGTCGGCTGAGCACCCGC
714 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
*
6131922 ACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
779 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * *
6131987 TTCCCAGTCTAAGATCGAACCGGACCAGACCGAGCATTGCAGCAGCACATGTTAGGCTCGG
844 TTCCCAGTCTAAGATCG-ACCGGACC-GA--G-G-GTTGCGGCAGCACATGCTGGGCTCGA
* * * * * ** *
6132048 GCATGTGTTGGTGCCACATTTTCCTCCATCGGGGCACCATCG-TTGAGCATCGTCGGAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
*
6132112 ACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGCGGGGGTGTGCGCACATGATGTGCGAT
66 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGAT
* *
6132177 GGGTGCTGTTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACACCC
129 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
6132242 CCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATAAAAGTGTCTGGAATGAGG
194 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
6132307 ACACTTTTTTCAAATGGTCAC-AAATCTTGTACAGTTCCAGTTTTTAGTTGAATTTTTTTGTGCA
259 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * ** * *
6132371 TGCCAACAAAAATACAAGGATCACGTCAACCAAATTTGGGGCTGAAAC-CCGTTCCGAAAAAGTT
324 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTTCGAAAAAATT
* * * * * *
6132435 TTAAAAAATCTCGATCCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTAGTCTTGCC
388 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * * *
6132500 ATAAAACTTCACATGAAGGCTTAAGGGACCATCGTTTGAATTTACAAGCCATAAAAATGGCATTG
453 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
**
6132565 GCACAAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
518 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
6132630 CCCGTCTCTCTGGCTGGCGTAGAGCCCGCCAGCCCGCCCGCTCGCCCGCTCTTTTCATCGGTTCG
583 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCT----CG----TTTCGTCGGTTGG
* * ** *
6132695 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATC-AGACCGAGGGTTATGGTAGCAGGA
640 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCAGGA
* * * *
6132759 TCGGCAGCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCAGCT
704 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
6132824 GAGCACCCACATGCTTGTTTCATGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCAT
769 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
*
6132889 ACGGAATTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCCGATCATACCGAG
834 ACGGAGTTCATTCCCAGTCTAAG-AT-C---G---A----C---C---G----G-----ACCGAG
* *
6132954 GGTTACGACAGCACATGCTGGGCTCGA
872 GGTTGCGGCAGCACATGCTGGGCTCGA
* * * * ** * **
6132981 GCATATGTTGGTGCCACATTTTTATTCGTCGGGGCACCATCATCGAAGCATCATCGGAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
** * * * * * *
6133046 ACCAACGGCATTAGGGTTCC-AGTGATTGAGGGGTC-GAGGGGTGTGCGCACATGATGTGCGATG
66 ACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* * * *
6133109 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAGCAATCCTCAAGAACTCACACCTC
130 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
6133174 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATAAAAGTGTCTGAAATGGGGA
195 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
6133239 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTACAT
260 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
6133304 GCCAACAAATATACAAGGATCACGTCTAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTG
325 G-C--C-AA-A-A-AA--A--A----T-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
** * ** * *
6133369 AATTCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAATTCGTGAAAAATAGAAAA
374 CTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* *
6133434 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTCTGAATTTACAAGCCA
439 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
6133499 TCAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
504 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * *
6133564 CACGGCTTGCGCATTCCGTCTCTCTGGCCGACGTAGTG--C-CC-GCCCGCCCGCTCGTTTCATC
569 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTC
* * * **
6133625 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATTGGACCGAATCGAGGGTTGCATCAG
634 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAG
* ** * * * ** * * *
6133690 CAAGATTAGCAGCATGTAGAGGGGGACTCGATTGATCCTCGGCTTGTGCATCCCGCCCCTCTTGC
699 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * *
6133755 CGGCCGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCAAACAGAGTTCATTCCTAGTCTA
764 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
6133820 AGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATCCTGG
829 AGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* *
6133885 CCTCGG
893 GCTCGA
* * * *
6133891 GCATGTGTTGGTGCCACATTTTTCTTTGTC--GG-----T-G-C--ACCATCGCCGGAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * ** *
6133945 ACTGGCGGCATTAGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCTTACATGATGTGTGATGG
66 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* *
6134010 GTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
131 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
6134075 TTAAAGAGCAATTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
196 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * **
6134140 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATGATTTTGTGCATG
261 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
6134205 CAAAAAAAAAAAACAAGTATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAGAATTTT
326 C-CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
* ** *
6134270 AAAAAATCCCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCAT
390 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
6134335 GAAACTTCACATGAAGGCTTAAGGGTCCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGC
455 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * *
6134400 ACATAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACGGCTTGCACATCC
520 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** * *
6134465 CATCTTTCTGGCCAACGTAGTGCCCGTCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAAGCATA
585 CGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
6134530 CGGAGTTCATTCCCAGTTTAAGATTGGACCGAACCGAGGGTTGCAGTAGCAGGATCGGCAGCACG
650 CGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * ** * *
6134595 TAGAGGAGGACCCAACTAATCCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCTTAGCACCCGCA
715 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
* * ** *
6134660 CGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAATTATATGGAGTTCAT
780 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * ** *
6134725 TCCCAGTTTAAGATCGAATCAGACCGAGGGTTATGACAGCACATGCTGGGCTCGA
845 TCCCAGTCTAAGATCG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
*
6134780 GCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * * *
6134845 ACCGACGGTATTGGGGTTCCGACGATCGAGGGGCC-AGGGGGTGTGCGCACATGATGTGTGATGG
66 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * * * * *
6134909 GTGCTGGTAATTGGCCCTTATATTGGCCCCCCATTCCTCGTCAAAACTCGAGAACTCACACTCCC
131 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
6134974 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGAC
196 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
6135039 ACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
261 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
6135104 CCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
326 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
* * *
6135169 AAAAATCCCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCCATG
391 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
6135234 AAACTTCATGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
456 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * *
6135299 TGCAGAAACATGAAGAAGTGCCTAAACCTACCTACCACCCTATCGATCCACGGCTTGGGCATCCA
521 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
6135364 GTCTCT-TGGCCGGCGTAGTGCCCGCCCGTCCGCCCACTCGTTTCGTCGATTGGCTTA-GCATAC
586 GTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * * ** * *
6135427 GGAGTTCATTCACAGTCTAAGATAGGAATCG-ACTGAGGGTTGCGGTAGTAAGATTAGTAGCACA
651 GGAGTTCATTCCCAGTCTAAGATCGG-ACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
** * * * *
6135491 CAGAGGGGGACCCGGTCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCTGGTTGAGCACCCGCA
715 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCA
* ** * * *
6135556 CGCTCGTTTCATTTGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTATGGAGTTCAT
780 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* *
6135621 TCCCAATCTAAGATCCGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGA
845 TCCCAGTCTAAGAT-CGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * * * *
6135676 GCATGTGTTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGCAGCATCGCAGGAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * *
6135741 ACTGGTGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTTGTGCGCACATGATGTGCGATG
66 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* *
6135806 GGTGCTAGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
130 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
6135871 CTGAAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGG
195 CT-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
6135936 ACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATCTTTTTGTGCA
259 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
6136001 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCGAAAACTCC-TTCCAAAAAATTT
324 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
* * * *
6136065 TAAAAAAACCCGAACCGTTAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCA
389 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
6136130 TGAAACTTCACGTGAACGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGC
454 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
** * * *
6136195 CACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATACATGGCTTGCGCATC
519 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * ** *
6136260 CCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCATCCTTCCCCTCATTTCATTAGTTCGC
584 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG------C--CCGCTCGTTTCGTCGGTTGGC
* ** * * *
6136325 TTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAAACCGAGGGTTACGACAGCAGGATC
641 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATC
* * * *
6136390 GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGCCCGGTTGA
706 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
6136455 GCACCCGCACGTTTGTTTCGTGGGTGGACTTAGGCATATGGAGTTCATTACCAGTCTAAGCATAC
771 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * ** * * *
6136520 GGAGTTCATTCCCAGTCTATGATCAAACCAGACTAAGGGTTACGGCAGCACATGCTAGGCTCGG
836 GGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * *
6136584 GCATGTGCTGGTGCCGCATTTTTCTTTGCCAGGGCACCAT--------CA---CCGGAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * * * *
6136638 ACTGGCAGCATTGGGGTTCC-AGCGATCGGGGGGGCCGGGGGCGAGTGCGCAGATGAAGTGCGAT
66 ACCGGCGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
6136702 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
129 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
6136767 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATGGGG
194 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
6136832 ACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGCTGAATTTTTTTGTGCA
259 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
6136897 TGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCCAAAACTCCTTCCGAAAAAATTT
324 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
*** *
6136962 TAAAAAATCCCGAACAACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCCA
389 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
6137027 TGAAACTTCATGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
454 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
6137092 CAC-CTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCAT
519 CACGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
6137156 CTCGTCTCTCTGGCCGACGTAGTGCCCG--T--CCGCCCGCTCGTTCCGTCAGTTGGCTTAGGCA
583 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* ** * * * * *
6137217 TACGAAGTTCATTCGTAGTCTAAGAT-TGAACTACACTGAGGGTTGCGGCAGCAGGATCGACAGC
648 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * * * *
6137281 ACGCAGAGGGGGACCCGACCGATCCTCGACTTACGCATCCCACCCTTCTGGCTGGTTGAGCACCA
712 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* * * * *
6137346 ACACGTTCATTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAG-AT-C-GA---
777 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
6137405 -A----C---C----A---A----ACTGAGGGCTGCAGCAGCACATGCTGGGCTC-A
842 CATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * * *
6137442 GGCATGTGTTGGTGCCGTATTTTTCTTCATTGGGGCACCAT---C---G--T---CGAAGAACCT
1 -GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
** *
6137496 GACCGATGTCATTGGGGTTCCTG-CGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
65 GACCGGCGGCATTGGGGTTCC-GACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
** *
6137559 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTGCTCATCAAACCTTGAGAACTCACACC
128 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
6137624 TCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGG
193 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GG
* *
6137689 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTCTTTTGTG
257 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
** * * * *
6137754 CATGCCAAAAAAAAATACAAGGATCACGTCTAAAAAGTTTGGGACCAAAACTCCATCCGAAAAAG
322 CATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * * *
6137819 GTTTAAAAAATCCCGAACCGTAAAACGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTT-
386 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
6137883 CCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
451 CC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
6137948 TTGGCAC-CTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTAC
515 TTGGCACGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
6138012 GCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTCCGTCAGTTGGCTTA
579 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * **
6138077 GGCATACGGAGTTCATTCGCAGTCTAAGATTGGACCGGACCGAGGGTTACGACAGCAGGATCGAT
644 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * * * * * *
6138142 AGCACGTAAAAGGGGAACTGACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCTGGTTAAGCA
709 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
** * * *
6138207 CCAACACGTTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CC---C--A--AT-C---
774 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * ** * *
6138260 --T-AAT---A-TC--A-A---ACTGGATTGAGGGTTGCGGCAGCACATGCTGGGCTGGG
839 GTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * *
6138307 GCATCTGTTGGTGCCGTATTTTTCTTCGTTGGGGCACCAT---C---G--T---CGGAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* *
6138361 ACCGACAGCATTGGGGTTCCTG-CGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGAT
66 ACCGGCGGCATTGGGGTTCC-GACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
**
6138424 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTGCTCATCAAACCTCGAGAACTCACACCC
129 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
6138489 CCTTAAAGAGCATTTGAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
194 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
6138554 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTCTTTTGTGCA
259 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
6138619 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAAGTT
324 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
* * ** ** *
6138684 GAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG-CA
389 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
6138748 TTGAAACTTCTCGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
454 -TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* ** * *
6138813 GCACGCAAAAATGGGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACAGCTTG-GTCA
518 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG-CA
* * * * * *
6138877 TCCCGTCTCTCTGGCTGGCGTAGT----G--T--CCACCCGCTTGTGTCATCGGTTGGCTGAGGC
582 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
6138934 ATACAGAGTTCATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTGTGGTAGCAGGATTGGCAG
647 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * *
6138998 CACGCAGATGGGGACCCGACCGATCCCCGGCTTTCGCATCCCGCCCCTCTGGCCGACTGAGCACC
711 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
*
6139063 CGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG-
776 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
6139118 --------A-TC---G---GACCGGACCGAGGGCTACGGCAGCACATGCTGGGCTCGG
841 TCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * **
6139161 GCATGTGTTGGTGCCGCATATTTCTTCACCGGGGCACCAT--------CA---CCGGAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
** * * * *
6139215 ACCGATGGCATTGGGGTTTCGACGATCAGGGGGTCCAGGGGGGTGTGCGCACATTATGTGCGATG
66 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
*
6139280 GGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCC
130 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
6139345 CTTAAAGAGCATTTGAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
195 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
6139410 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCAT
260 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
6139475 GCCAACAAAAATTCAAGGATCACGTCTACCAAGTTTGGTGCCAAAAATCCTTCCGAAAAAATTTT
325 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
* * * *
6139540 AAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
390 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * *
6139605 GAAACTTCACGTGAAGGCTTAAGGGACAATTATATAAATTTACAAGCCACAAAAATGGCATTGGC
455 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * * * * *
6139670 ATGTAGAAATACGAACATGTGCCTAAACCCAACTACCACACTATCAATCCACGACTTGCACATCC
520 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* ** * * * *
6139735 CATCTCTCTGGATGGCGTAGTGCCCACCCGCCCGCCCGCCCACTGATTTCGTCGATTGGCTTAGG
585 CGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCG--CTC-G-TTTCGTCGGTTGGCTTAGG
* * * * ** * **
6139800 CATACTGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTATGGCAACAGGATCGATAG
646 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAG
* ** * * ** * *
6139865 CACGCAGAGGGGGACCAGGTCGATCCTCAGCTTGCGCATCTTGCCCCT-TCGGCCTGCTGTGCAC
711 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT-GGCCGGCTGAGCAC
* * * * * **
6139929 CCGTACGCTCATTTCGTGGGTTGACTTATGCATACGGAGTTCATACGCAGTCTAAGCATATAGAG
775 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* *** * ** * ** * * * *
6139994 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACAGATCTCATTCCTAGTC
840 TTCATTCCCAGTCTAAG-AT-C-GA--CCGGACCGAGGGT-TGC-GGCAG--CACA-TGCTGGGC
*
6140059 T-AA
895 TCGA
* * ** * ** **
6140062 GCATACAGAGTTCATTCC-CAGTCTAAGATCGGACCGGATCGAGGGTTACAGCAGCACATGCTGG
1 GCAT---GTGCTGGTGCCGCA-T-T--TTTC--TTC-G-TC--GGG-----GCA-C-CAT-C---
* ** * * * ** *
6140126 GCTCGG-GCATGTGTTGGTGCCGTAATTTTCTTCAATGG-GGCACCATCGTTGGAGCATCTCCGG
42 GC-CGGAGCAT-CG-CCG-G-AG-AA----CCTGACCGGCGG---CA---TTGG-G-GT-TCC-G
* * *** * * ** * **
6140189 A-GAACCTGACCGGCGGCATTGGGGTTTTG-GCA-ATCGGGGGGGCCGGGGGGGTGTGCACACAT
87 ACG-A--T--CGGGGGGCCGGGGGGGTGTGCGCACAT--GATGTG-C--GATGG-GTG----C--
* ** ** * *
6140251 GATGTGTGA-TGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAAACTCGAA
135 --TG-GT-ACTTGGCCCTTATA-TT-G-----------GCCCCCTATCCCTCATCAAACCTCGAG
*
6140315 AACTCACA-CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
183 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
6140379 CTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAAT
248 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*** * * *
6140444 TTTTTTACACACGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACT-CGTT
313 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
** ** *
6140508 CTGAAGGAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGGAAAATAGAAAACGA
378 C-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* * *
6140573 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTATAAATTTACAAGCCATAA
442 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** *
6140638 AAATGGCATTGGCACAAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCAC
507 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * ** * * * * *
6140703 GGCTTGTGCATCTCGTCTTTCTGGCCGGTATAGT--AC-CC-GCCCTCCCGCTCGTTTTGTCAGA
572 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGT
* * * * * * * * *
6140764 TGGCTTAGGCATACTGAGTTCATTTCCAGTCTAAGATCGGTCTGGACCAAGGGTTGAGACAACAG
637 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAG
** * * * ** * *
6140829 GATTAGTAGCACGTAGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGTCGG
702 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
6140894 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTAACC
767 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * **
6140959 ATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCAT
832 ATACGGAGTTCATTCCCAGTCTAAG-AT-C---G---A--CC--G-----G---ACCGAG--GGT
* * * * *
6141024 TCCAGTCTAAGATCAAATCGGACTGATGGTTGTGGCA
875 TGC-GGC--AG--CACAT--G-CTG--GG--CTCG-A
** * ** * ****** * * * *
6141061 GCACATGCTGG-GCTCGGGCATGTGTTGGT-GCCGTATTTTTCTTCGCTGGGGCACCATCACCGG
1 GCATGTGCTGGTGC-C--GCAT-TTTTCTTCGTCG-GGGCACCATCGC--CGG-AGCATCGCCGG
*
6141124 AGAACCTGACCGGCGGCATTGGGGTTCCTACGATCGGGGGGGCCGGGGAGGGTGTGCGCACATGA
58 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGG-GGGTGTGCGCACATGA
*
6141189 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAA
121 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG-AA
* *
6141254 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCA
185 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
6141319 AAAATGGGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGAGTATTTGGCTGAATTT
250 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
6141384 TTTTATGCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTTGGGCCAAAACTCCTTTCG
315 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* *
6141449 AAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
380 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * *
6141514 GTCTTGCCATGAAAGTTCACGTGAAGGGTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAA
445 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
6141579 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
510 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
6141644 TTGCGCATCCCGTCTCTCAGGCTGACGTAGTTCCTGCCCCTCTGGCCGACGTAGTTCCCGCCCGC
575 TTGCGCATCCCG--TCT----CT--C-T-G-----G---C-C--G--G-CGTAG-T---GCCCGC
** * *
6141709 CCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATCGG
612 CTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * *
6141774 ACC-AGACCGAGGGTTGCGGCAACAAGATCAGCAGCACGTAGAGGGGGACCCGATCGATCCCCGG
677 ACCGA-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGG
* *
6141838 CTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
741 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * *
6141903 ATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA
806 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCG
* *
6141968 AGGGTTGCGGCAGCACATGCTAGGCTCGG
870 AGGGTTGCGGCAGCACATGCTGGGCTCGA
* * *
6141997 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAGAACATG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * * * *
6142062 ACCAGCGGCATTGGGCTTCCGATGATCGGGGGGTC-GGGGGGTGTGCACCCATGATGTGCGATGG
66 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
* * * *
6142126 TTGCTAGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACACCCCC
131 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* ** *
6142191 TTTAAGAGCATTTGAGATTTTACAGGTTTGCTGCTGGTAGCCATTAAAGTGTCTGAAATGAGGAC
196 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
6142256 AGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATT
261 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * ** * *
6142321 TCAAAAAAAATTCAAGGATCACACCTACCAGGTTTGGGGCCAAAAAT--TTTCTGAAAAAATTTT
326 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTT
* *
6142384 AAAAAATCCCGAACCGTAGAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
390 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
6142449 GAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAGAAATGGCATTGGC
455 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
6142514 ATGTAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCC
520 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
6142579 CCTGTCTCTGGCCGGCATAGTG--C-CC-G--C-CCC-CTCGTTTCGTCGGTTGGCTTAGCCATA
585 CGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
6142636 CGGAGTTCATTCCCAGTCTAAGATCAGACC-AGACCGAGGGTTGCAGTAGCAGGATCGGCAGCAT
650 CGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * ** * * * *
6142700 GCAGAGGGGGACCTGGCCGATCTTCGGCTTGCACATCCCGCCCCTTTGGCCGGCTGAACGCCCGC
714 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
* * *
6142765 ACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATTCGGAGTTCA
779 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* *
6142830 TTCCTAATCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
844 TTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * * **
6142886 GCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGACACCATCGTCGGAGCATCGCTAGAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * * * *
6142951 ATCGGCGGCATTGGGGTTCAGGCGATCGGGGGGGCTGGGCGGGTGTGCGCACATGGTGTGCGATG
66 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* * * * *
6143016 GGTGCTAGTAGTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCTAGAACTCGCACCCC
130 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
6143081 CTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGA
195 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * * * *
6143146 CACTTTTTTCAAATGGTCATAAAATTTTGTACACCTCGAGTTTTTAGCTTAATTTTGTTATGCAT
260 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
6143211 GCCAACAAAAATAC-AGCGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
325 GCCAAAAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
** * * * * *
6143275 TAAAAAAATCCCGAA-CGATGGAAAGTTTCAAAATTCGTGGAAAATAGAAAACGAGTCATCCTGC
389 T-AAAAAATCCCGAACCG-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
6143339 CATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATT
452 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * * **
6143404 GGCATGTAGAAATGTGAAGATGTGCGTAAACAAACCTACCACCCTATCGATCCACGGCTTGCGCA
517 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
6143469 TCCCATCTCTCTGGCCGGCGTAATGCTCGCCCGTTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
582 TCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC--T-GCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
6143534 AGGCATACGGAGTTCACTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGTAGTC-GGATTG
643 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAG-CAGGATCG
* * * * ** *
6143598 GTAGCACGTAGAGGGGGACCC-AGTCGATCCTCGGCTTATGCATCTCGCCCCTCTGGCCGGCTGA
707 GCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
6143662 GCGCCCGCATGTTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA-
771 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* *
6143720 --AG---------A-TC---G---GACCGGACCGAGGGTTGCGGCAGCACTTTCTGGGCTCGA
836 GGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * * * **
6143765 GCATTTGCCGGTGCCACATTTTTCTTCG-CTAGGGCACCATCGTCGGAGCATCGCTAGAGAACCT
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
* *
6143829 GACCGGCGGCATCGGGGTTCCGGCGAT-------CC--GGGGG-GTGCAG-ACATGATGTGCGAT
65 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGC-GCACATGATGTGCGAT
6143883 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CC
129 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
6143947 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
194 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
6144012 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
259 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
6144077 TGCCAACAAAAA-GCAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCC-TTCTGAAAAAATT
324 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATT
* * ** * *
6144140 TTAAAAAATCCCAAACTGTAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCG
388 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
6144205 ATGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
453 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
6144270 GCATGCAGAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAATGGCTTGCGCAT
518 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
6144335 CACGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGTCCGCTCGTTTTGTCAGTTAGCTTAGGCA
583 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * *
6144400 TACGGAGTTCATTCCCAGTGTAAGGTCAGAGC-AGACAGAGGGTTGTGGCAGCAGTATCGGCAGC
648 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * *
6144464 ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCC
712 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* * * * * *
6144529 GCATGCTCATTTCGTGGGTTGACTTAGGTATACAGAGTTCATTCCCAGTCTCAGCATGCGGAGTT
777 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
6144594 CATTCCCAGTCTAATAGTAGACCGGACCGAGGGTTGCGGCAGTACATGCTGGGCTCGA
842 CATTCCCAGTCTAAGA-TCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
*
6144652 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * *
6144717 ACCGGCGGCATTAGGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATG
66 ACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
*
6144782 GGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
130 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
6144846 CTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
195 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
6144911 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTATGCAT
260 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
6144976 ACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACGCCTTCCGAAAAAATTTT
325 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
** * * *
6145041 AAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAGAACGAGTCGTCTTACCAT
390 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
6145106 GAAACTTCACGTGAAAGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGC
455 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
6145171 ACACCGAAATATGAAGATGTGCCTAAA-CCA-CGA-CACCCCTAACGATCCACGCGCTTGTGGGC
520 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACG-GC-T-TGCGC
* *
6145233 ATCCCGTCTCGTCTGGCCGACGTTAGTGCCCGCC-G---G--C-CTCATTTCGTCGGTTGGCTTA
581 ATCCCGTCTC-TCTGGCCGGCG-TAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * *
6145291 GGCATAC-AAGTTCAATTCCTAGTCCTACGATTGGACAG-ACCTAGGGGTTATTCGGTAGCCA-G
644 GGCATACGGAGTTC-ATTCCCAGT-CTAAGATCGGACCGAACCGA-GGG-T-TGCGGCAG-CAGG
** * * *
6145353 ATCGATAGCACGCAGAGGGGGAACACC-AGCGCGATCCCTGGCTTGCGCATGCCTGCCCCTCCTA
703 ATCGGCAGCACGCAGAGGGGG-AC-CCGA-C-CGATCCCCGGCTTGCGCAT-CCCGCCCCT-CTG
** * * * *
6145417 GCCGTGCCTGAGCGGGCCGCACCGCTTGTTTCATGGGTTGACTTAGGCAT-TGGAGTTTCAGT-C
762 GCCG-G-CTGAGC-ACCCGCA-CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG-TTCATTCC
* * * *
6145480 CAGTCT-CGCATTACGAAGTTCATT-CCA-TCTATAGATCGGA-CGTGACCAAGGGTTTG-AGCA
822 CAGTCTAAGCA-TACGGAGTTCATTCCCAGTCTA-AGATC-GACCG-GACCGAGGG-TTGCGGCA
*
6145540 GCACATGCTGGGCTAG-
882 GCACATGCTGGGCTCGA
* * *
6145556 GCAAATCGTGCTGGTG-CGCATTTTTTCTTCATCGGGGCA-CATCGGTCGGCAGCATCGTC-GAG
1 GC--AT-GTGCTGGTGCCGCA-TTTTTCTTCGTCGGGGCACCATC-GCCGG-AGCATCGCCGGAG
* * *
6145618 AACGCTGACCGACCGGCAATTAGGGTTCCGACGAT-GAGGGGGTCGGCGGGGGTGTGCGCACATG
60 AAC-CTGACCG-GCGGC-ATTGGGGTTCCGACGATCG-GGGGGCCGG-GGGGGTGTGCGCACATG
* *
6145682 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATAATGGCTCCCTATCCCTCATCAAACCTCGAGAA
120 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
6145747 CTCACACCCCACTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATGAAAGTATC
185 CTCACACCCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
6145812 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTGTTAAGCTGAAT
249 TGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
6145877 TGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC
313 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
* * *** *
6145942 CAAAAAAATTTTAAAAAATCCCAAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAG
378 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
6146007 TCGTCTTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGT-TGAATTCACAAGCCATAAA
443 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * *
6146071 AATGGCATTGGCACGTAGAACTATGAAGATGTACCTAAACCCACCTGCCACCCTATCGATCCATG
508 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
** *
6146136 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCCGTCCGGCCGCTCGTTTCATC
573 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG--C--CCGCTCGTTTCGTC
* ** * * * * * *
6146201 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTTAGATCGGATCAAGGGTTACGGTAG
634 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAG
* ** * * * * *
6146266 CAGGATCGACAGCACATAGAGGGGGACCCGATCGATCCCCAGCTTACGCATCCCACCCCTCTGAC
699 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
6146331 CGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTC
764 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
6146396 AGCATGCGGAGTTCATTCCCAGTCTAATAGTAGACCGGACCGAGGGTTGCGGCAGTACATGCTGG
829 AGCATACGGAGTTCATTCCCAGTCTAAGA-TCGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
6146461 GCTCGA
893 GCTCGA
*
6146467 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * *
6146532 ACCGGCGGCATTAGGGTTCCGACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATG
66 ACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
*
6146597 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
130 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
6146662 CTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
195 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
6146727 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
260 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* ** * *
6146792 GCCAACAAAAAGGCAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCC-TTCTGAAAAAATTT
325 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTT
* * ** * *
6146856 TAAAAAATCCCAAACTGTAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCGA
389 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
6146921 TGAAACTTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
454 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * * *
6146986 CATGCAAAAATATTAAGATGTACCTAAACCCACCTACCACCCTATTGATCAATGGCTTGCGCATC
519 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
6147051 ACGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGTCCGCTCGTTTTGTCAGTTAGCTTAGGCAT
584 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
6147116 ACGGAGTTCATTCCCAGTGTAAGGTCAGAGCAGATA--GAGGGTTGTGGCAGCAGTATCGGCAGC
649 ACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGA-ACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * *
6147179 ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTTGAGCGCCC
712 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* * * * * *
6147244 GCATGCTCATTTCGTGGGTTGACTTAGGTATACAGAGTTCATTCCCAGTCTCAGCATGCGGAGTT
777 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
6147309 CATTCCCAGTCTAATAGTAGACCGGACCGAGGGTTGCGGCAGTACATGCTGGGCTCGA
842 CATTCCCAGTCTAAGA-TCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * *
6147367 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCAGGAGCATCGTCGAAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * * *
6147432 ATCGGCGACATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAAGG
66 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* * * *
6147497 GGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAAGTCAAACCCC
130 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
6147562 CTTAAAGA-TATTTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGGG
195 CTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
6147626 ATACTTTTTTCAAAAGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
259 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
6147691 TGCCAACAAAAATACAAGGATCA-GTCTACCAAGTTTAGGGCCAAAACTCATTTCAAAAAAATTT
324 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
* * *
6147755 TAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCCA
389 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
6147820 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCAAAAGCCATAAAAATGGCATTGG
454 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
6147885 CATGCAGAAATATGAAGATGTCCCTAAACCCACGTACCACCCTATCGATCCACGGCTTGCACATC
519 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
** *
6147950 CCGTCTCTCTGGCCGATGTAGTGCCCGCC-GCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCAT
584 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
6148014 ACGAAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCAGCAGTAGGATCGACAGCAC
649 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * * * * **
6148079 GCAGAGGGGGACCCGATCAATCCCCGGGTTGTGCATCCCGCCCCTCTGACCGGTTGAGCACTTGC
714 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
* * * *
6148144 ACGCTCGTTTTGTGGGTTGACTTAGGAATACGGAGTTCACTCCCAGTCTAAGCATACGAAGTTCA
779 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * *
6148209 TTCCCAGTCTAAGGTTGGACTGGACCGAGGGTTGTGGTAGCACATGCTGGGCTC-A
844 TTCCCAGTCTAA-GATCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * ** * *
6148264 GGCATGTTCTGGTGCTGAATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCT
1 -GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
* *** * * * *
6148329 GTCCGGCAATATTGGGGTTCAGGCGATCGGGGGGGCCGAGGGGGTGTACGCACATGATGTGCGAT
65 GACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
*
6148394 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACA-CC
129 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
6148458 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGC
194 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
6148523 ACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTTTTTT
259 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA----TTTTTTTG
* * * *
6148588 TGCATG-GAACCAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCC-CTCTGAAA
320 TGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAA
* * *
6148651 AAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTC
383 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
6148716 TTGCCATGAAACTTCACGTGAGGGCTTAAGGGTCCATTGTATGATTTTACAAGCCATAAAAATGG
448 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
6148781 CATTCACATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
513 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
6148846 CGCATCCCATCTCTCTGGACGGCGAAGTG--C-CC-GCCCGCCCGCTCATTTCGTCAGTTGGCTT
578 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * ** *
6148907 AGGCATACAGAGTTCATTCTCAGTCTAAGATCGGACTGAAATGAGGGTTGCGGCA--A-CAT---
643 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGG
* * * * * *
6148966 --GCA-G-A-A-GGGGACCTGACCGACCCCCGACTTGTGCATCCCGCCCCTTTGGCCGACTGAGC
708 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * ** *
6149025 GCCCCCACGCTCGTTTCGTGGGTTTACTTAGGCATACATAGTTCATTCCCAGTCTAAGCATATGG
773 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * * *
6149090 AGTTCATTCCCAATCTATGATTGGATCAGACCGAGGGTTTCGGCAGCACATGCTGGGCTCGG
838 AGTTCATTCCCAGTCTAAGA-TCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* ** * * * * *
6149152 GCATGTGATGGTGCCGTGTTTTTCTTCGCCGGGGCACCATCGTCTGAGCATTGTCGGAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * *
6149217 ACAGGCGGCGTTGGGGTT-CGACGATCGGGGGGGTCGGGGGGGCGTGCGCACATGATGTGCGATG
66 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
*
6149281 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCC
130 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
6149346 TTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATATTTGAAATGGGGA
195 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
6149411 CACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCAA
260 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
6149476 GCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTT
325 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
* *
6149541 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTACCAT
390 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
6149606 GAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGC
455 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
6149671 ATGCAGAAATAAGAAGATGTACGTAAACCCACCTACCACCCTATCGATCCGCGGCTTGCGCATCC
520 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
** * * * *
6149736 CGTCTCTCTGGCCAACGTAGTGCCCGTGCGCCCGCCCGCCCGCTCGTTTCATAGATTGGCTTAGG
585 CGTCTCTCTGGCCGGCGTAGTG-CC---CGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ** *
6149801 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATGGAGGGTTGTGGCAGC---A-----A-
646 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * **
6149857 -A--CAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATACCGCCCCTCTGGCCAGCTGAGTGCC
711 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
* * * * *
6149919 CGCACACTCGTTTCATAGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATATGGAGT
776 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * * * *
6149984 TCATTCCCAGTTTAAGATCGGACCAGACCGAGGGTTACAGTAGCACATGCTGGGCTAGG
841 TCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* *
6150043 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACTGGAGAACCTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * * * *
6150108 ACCAGCGGCATTGGGGTTCTGACGATCGAGAGGCC-GGGGTGTGTGCGCACATGATGTGCGATTG
66 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
*
6150172 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
131 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
6150237 TTAAAGAGCATTTGAGATTTTACAGTTTTGTTGCCAGTAGCCATTAAAGTGACTAAAATGGGGAC
196 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
6150302 ACTTTTTTCAAATGGTCACAAACA-CTTGTACACTTCGAGTTTTCAGCTGAA-TTTTTTGTGCAT
261 ACTTTTTTCAAATGGTCACAAA-ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
6150365 GCCAAAAAAGATACAAGGATCATGTCTACCAATTTTGGGGCCAAAACGCCTTCCGAAAAAATTTT
325 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
** ** * *
6150430 AAAAAATCCCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGCCGTCTTGCCAT
390 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
6150495 GAAACTTCACGTGAAGGCTTAAGGGACCCTTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
455 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * ** *
6150560 ACATAGAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTCGCGAGCCACGGCTTGCGCATCC
520 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * *
6150625 TGTCTCTCTAGCTGAGTAGTGCACGCCCGCCCGCCCGCCCGCCCGCTTTCTCGTTTGGTCGGTTG
585 CGTCTCTCTGGCCG-G-CGT--A-G--TGCCCGCCTGCCCGCCCG----CTCGTTTCGTCGGTTG
* * * * * * * *
6150690 GCATCGGCATAGGGAGTTCATTCCTAGTCTAAGATCAGA-CTAGAGCGAGGGTTGCGGTAGCAGG
639 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCAGG
* ** * * * *
6150754 ATCAGCAAAACGTAGAGGAGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCTCTCTGGCCGGC
703 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
6150819 TGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA
768 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
6150884 T-GGGAGTTCATTCTCAATCTAAGATCGGATCGGACTGAGGGTTCCGGCAGCACATGCTGGGCTC
833 TACGGAGTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
6150948 -A
897 GA
* * * * ** * * * * *
6150949 GACATGTGTTGGTGTCGTATTTTTTTTCACCGGGGCACCATCGTCGAAGTATCACCAGAGAACCT
1 G-CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
** * * * *
6151014 GACCGATGGCATTGAGGTTTCGACGATCGAGGGGGCC-GGGGGGTGTGCGCTCGTGATGTGCGAT
65 GACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * ** * * *
6151078 GGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAATGTCAAGAAGTCAAACCC
129 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
6151143 CCTTAAAGACCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
194 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
6151208 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCA
259 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* ** * * *
6151273 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTATGGCCAAAAGTCGTTTCAAAAAAATTT
324 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
* * * *
6151338 GT-AAAAATCCCGAACTGCAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGGGTCGTCTTGCC
389 -TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
*
6151402 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTG
453 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
6151467 GCACGTAGAAATATGAAGATGTCCCTAAACCCACGTACCACCCTATCGATCCACGGCTTGCACAT
518 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * *
6151532 CCCGTCTCTCTGGCTGACATGGTGCCTGCC-GCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCA
583 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
** * * ** *
6151596 TACGGAGTTCATTCCCAGTCTAAGATTAGACTGGAA-TGAGGGTTGCTACAGCAGGATCGACAGC
648 TACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGAACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * * ** * *
6151660 ACGTAGAGGGGGACCCAATCGATCCCCGGGTTGTGCATCCTGCCCCTCTGATCGGCTGAGCGCCT
712 ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
* * * * * *
6151725 GCACGTTCATTTTGTGGGTTAACTTAGGCATACGGAGTTTACTCCCAGTCTAAGCATACGGAGTT
777 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * *
6151790 CATTCCAAGTCTAAGGTTGGACTGGACCGAGGGTTGTGGTAGCACATGCTGGGCTC-A
842 CATTCCCAGTCTAA-GATCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * * * *
6151847 GGCATGTGCTGGTGCCGAATTTGTCTTCGCCAGGGCA-CATCGCCGGAGCATCACCAGAGAACCT
1 -GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
* * * * *
6151911 GTCCGGCGACATGGGGGTTCCGATGATCGTGGGGG-CTGGGGGGTGTGCGCACATGATGTGCGAT
65 GACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* *
6151975 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGACAACTCACACCC
129 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * *
6152040 CCTTAAAGAGCATTTGAG-TTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAGTGGGC
194 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
6152104 ACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAA-TTTTTT-TCCA
259 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
6152167 TGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCTGAAAAAATT
324 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATT
* * **
6152231 TTAAAAAATCCTGAACCTTAAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGC
388 TTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
6152296 CATGAAACTTCACGTCAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCAAAAAAATGGCACT
452 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
6152361 CGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCA
517 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
6152426 TCCCATCTCTCTGGACGGCGTAGTGCCCG--T--CCGCCCGCTCGTTTCGTCAGTTGGCTTAGGC
582 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
** * * * *
6152487 ATACATAGTTCATTCTCAGTCTAATATCGGACCAAAACGAGGGTT---------GGA---GCAGC
647 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * * **
6152540 ACGAAGAGGGGGACCCGACCGA-CCCCTGACTTGTGCATCCCGCCCGTTTGGCCGGCTGAGTGCC
712 ACGCAGAGGGGGACCCGACCGATCCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
* * * * *
6152604 CCCACGCTCGTTTCGTGGGTTTATTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGT
776 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* ** *
6152669 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTTTGGCAGCACATGCTGGGCTCGG
841 TCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
** * * * *
6152728 GCATGTGCTGGTGCCGTGTTTTTCTTC-CCTAGGGCACCAACGCCCGAGCATCGCCGGAGAACCT
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
* * * **
6152792 GACCGACGGCGTTGGGGTTCCGACGATCAGGGGGG-CTGGGGGGTGTGCGCACATGATGTAAGAT
65 GACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
** *
6152856 GGGTGCCAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCATACCTCGAGAACTCACACCC
129 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
6152921 CCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGG
194 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
6152985 A-ATCGTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTG
259 ACA-C-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
6153049 CAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCCAAAAAAT
322 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
* * * * *
6153114 TTTAAAAAATCACAAACTGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCATCTTG-
387 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
6153178 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
452 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
6153243 GGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTATCACCTTAATCGATCCTACGGCTGTGC
517 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCC-ACGGCT-TGC
* *
6153307 GCA-CCCGCTCTCTCTGGCCGGCGTAGTGCACTGCACCGCTCTGCCCG-CCGTATCGTTTCGTTG
579 GCATCCCG-TCTCTCTGGCCGGCGTA--G---TGC-CCGC-CTGCCCGCCCG-CTCGTTTCGTCG
* * * * * * * *
6153370 GTTGGGCTTAGGCAGCAGCAGAAGCTTCATTCCCAGTCCAATATTGGACAAAGATCTGAGGGTTG
635 GTT-GGCTTAGGCA-TA-C-GGAG-TTCATTCCCAGTCTAAGATCGGAC--CGAACCGAGGGTTG
* * *
6153435 CAGTATGGCAGG-T-GGTAGCACCGCAGAGGGGGGGACCC-AGCCGATCCCCTGGCTTGCGCGAT
693 CGGCA--GCAGGATCGGCAGCA-CGCAGA--GGGGGACCCGA-CCGATCCCC-GGCTTGCGC-AT
* * * *
6153497 CCCGCCCCT-TGGCC-GCTGCATCGCCACGCATG-TCGTTTCGTGGGTTGACTTAGGCATACAGA
750 CCCGCCCCTCTGGCCGGCTG-AGCACC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* *
6153559 GTTCATTCCCAG--T---C-TA-GGA----A-T----G-----GAT----CGGATCGAGGGATGC
813 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGC
* *
6153599 GGCAGCACCTGCTGGGCTCGG
878 GGCAGCACATGCTGGGCTCGA
* *
6153620 GCATGTGCTGGTG-CGACATTTTTCTTTGCCGGGG---CA----C----CATCGCCGGAGAACCT
1 GCATGTGCTGGTGCCG-CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
* ** * * * *
6153673 GACCGACGGTTTTGGGGTTCCGATGATCGGGGGAGCCGGAGGGGCTGTGTGCACATGTTGTGCGA
65 GACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCCGG-GGGGGTGTGCGCACATGATGTGCGA
** * **
6153738 TGGGCACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTTGCACC
128 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
6153803 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGG
193 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
6153868 GACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTGGGC
258 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
6153933 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAAAT
323 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
* * ** *
6153998 TTGAAAAATCCTGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCC
388 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * * *
6154063 ATGAAACTTCACGAGAAGGCCTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATGGCTTTG
453 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
6154128 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCTTGCGCAT
518 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
6154193 CCCGTCTCCCTGGCCGGTGTAGTG--C-CC-GCCCG-CCGACTCGTTCCGCCGGTAGGCTTAGGC
583 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCG-CTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * * *
6154253 ATA-GGTGTTCATTACCAATCTAAGATCAGACC-AGACTGAGGTTTGCGGTAAG-AGGATCGTCA
647 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGG-CAGCAGGATCGGCA
* * * * * *
6154315 GCACGTAGAGGGGGACCCGATCC-ATCCCCGGCTTGCACATCCGGCCGCTTTGGCCGGCTGAGCG
710 GCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* *
6154379 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAA
774 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
6154444 GTTCATT-CCAGTCTAAGATCGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
839 GTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * *
6154504 GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGAATTGCCGGAGAACTTG
1 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * * * * * * *
6154569 ACCGGTGACGTTGGGATTTCGACGAACTGAGGGGTC-GGGGGGTGTGCGCACATGATATGCGATG
66 ACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
6154633 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
130 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
6154698 CTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
195 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
6154763 CACTTTATTCAAACGGTCGCAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCAT
260 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * * *
6154828 GCCAATAAAAATAAAAGAATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAGATTTT
325 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
** * * ** *
6154893 AAAAAATCTTGAATCGTAAAATGTTTTGAAAATCGTG-AAAATAGAAAACGAGTCGTCTTGCCAT
390 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
6154957 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGC
455 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * * * *
6155022 ACACAAAAATATAAAGATGTACCTAAACCCACCTACCACCCTATCTATCCACGGCTTACGCGTCC
520 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
6155087 CATCTTTCTAGTCGGCGTAGTGCCCTTGCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGCCTTAGG
585 CGTCTCTCTGGCCGGCGTAGTG-CC---CGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * **
6155152 CGTAC-GAGTTCATTCCCAGT-TGAAGATTGGACTGAACCGAAGGGTTCCAGCAGCAGGATCGAT
646 CATACGGAGTTCATTCCCAGTCT-AAGATCGGACCGAACCG-AGGGTTGCGGCAGCAGGATCGGC
* ** * *
6155215 AGCACGTAGAGGGGGACCCGACCGATCCCCGG-TTGCGCATCCTACCCCTCTGGTCGGTTGAGCA
709 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
*
6155279 CCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
774 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * *
6155344 GTTCATTCCCAGTCTAATATCGGACTGGAGCGAGGGTTGCAGCAGCACATGCTGGGCTC-A
839 GTTCATTCCCAGTCTAAGATC-GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * *
6155404 GGCATGTGTTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCAGAGCATCGCCGGAGAACCT
1 -GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
* *
6155469 GACTGGCGGCAATGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCA-ATGATGT-CTGA
65 GACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGC-GA
* * *
6155531 TGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTTAGACC
128 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
6155596 CCCTTAAAGAGCATTTGAGATTTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGG
193 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
6155661 GACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGC
258 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
6155726 ATGCCAACAAAAATACAAGGATCATGTCAACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
323 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
* * *
6155791 TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTTTTGCC
388 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
6155856 ATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATAG
453 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
6155921 GCACGCAAAAATATGAAGATGTGCCTAAAGCCACCTACCACCTTATCGATCCACGGCTTGCACAT
518 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
6155986 CTCGTCTCTATGGCCGGCGTAATGCCCGCCTGCCCATCCGCCCGCTCGTTTCGTCGGTTGGCTTA
583 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTG--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * *
6156051 GGCATACGGTGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGACAGCAGGATCGCC
644 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGC
* * * *
6156116 AGCACACAGAGGGGGACCCGGCCGATCCTCGGCTTGTGCATCCCGCCCCT-T-------T--G--
709 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* *
6156169 ---GC-CG---G---C------TGAGTTAGGCATACGGAGTTCTTTCCCAGTCTAAGCATACGGA
774 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * *
6156218 GATCATTCTCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGTAGCATATGCTGGGCT-TA
839 GTTCATTCCCAGTCTAAGATCG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
* * * * * *
6156278 GGCATGTGCTGGTGCCGTATTTTTTTTTGTCGGGGCATCATCGTCGGAGCATCGTCGGAGAACCT
1 -GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
* * ** * *
6156343 GACCGGCGACGTTGGGGTTCCGTTGATCTGGAGGGCCGAGGGGGCGGTGTACGCACATGATGTGC
65 GACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC--GGGGG-GGTGTGCGCACATGATGTGC
* *
6156408 GATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCACCAAACCTCGAGAACTCACA
126 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
6156473 CCCCCTTAAAGAGCATTTGAGATTTT-CTAGGTTTGCTGCCAGTAGCCATTAAACTGTCTAAAAT
191 CCCCCTTAAAGAGCATTTGAGATTTTAC-AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
6156537 GGGGACACTTTATTCAAATGGTCACAAAATCTTGTACAC-TCTGAGTTTTTAGCTGAATTTATTT
255 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTT
* * *
6156601 GTGCATGCCAACAACAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTTC-AAAA
319 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * ** *
6156665 AAATTTAAAAAATCCCGAACCGTAAAAGGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
384 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
6156730 TGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
449 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
6156795 ATTGGCACGCAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGGCTTG
514 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GGCTTG
* * * * *
6156860 CGCAT-CCGTCTCTCTGGTCGACGTAGTGCCCGCCCACCCGCCCCGCCTTGCTCGTTTCGTTGGT
578 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCTG-CCCGCC-CGCTCGTTTCGTCGGT
* * * * *
6156924 TGG-TTAGGCA-ATGGAGTTCATTCCTA-TCTAACGGATCAGACCGGAACCGCGGCTTGCGGCA
637 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA--GATCGGACC-GAACCGAGGGTTGCGGCA
6156985 TCCTCGCCCC
Statistics
Matches: 21430, Mismatches: 2748, Indels: 1536
0.83 0.11 0.06
Matches are distributed among these distances:
853 1 0.00
854 275 0.01
855 464 0.02
856 4 0.00
857 3 0.00
858 159 0.01
859 231 0.01
860 286 0.01
861 188 0.01
862 255 0.01
863 99 0.00
864 444 0.02
865 220 0.01
866 51 0.00
867 305 0.01
868 74 0.00
869 7 0.00
870 13 0.00
871 21 0.00
872 2 0.00
873 4 0.00
874 178 0.01
876 2 0.00
877 11 0.00
878 227 0.01
879 395 0.02
880 223 0.01
881 214 0.01
882 211 0.01
883 635 0.03
884 265 0.01
885 435 0.02
886 107 0.00
887 445 0.02
888 5 0.00
889 856 0.04
890 213 0.01
891 548 0.03
892 310 0.01
893 499 0.02
894 85 0.00
895 280 0.01
896 646 0.03
897 956 0.04
898 1256 0.06
899 1262 0.06
900 1472 0.07
901 511 0.02
902 313 0.01
903 200 0.01
904 221 0.01
905 320 0.01
906 58 0.00
907 235 0.01
908 629 0.03
909 319 0.01
910 174 0.01
911 144 0.01
912 254 0.01
913 208 0.01
914 36 0.00
915 11 0.00
916 8 0.00
917 45 0.00
918 65 0.00
919 31 0.00
920 40 0.00
921 5 0.00
922 1 0.00
923 3 0.00
924 4 0.00
925 195 0.01
926 169 0.01
927 71 0.00
928 3 0.00
929 9 0.00
930 38 0.00
931 170 0.01
932 44 0.00
933 73 0.00
934 46 0.00
935 4 0.00
936 231 0.01
937 16 0.00
938 359 0.02
939 9 0.00
940 7 0.00
941 3 0.00
942 1 0.00
943 3 0.00
944 20 0.00
945 2 0.00
946 6 0.00
947 3 0.00
948 245 0.01
949 16 0.00
950 3 0.00
951 5 0.00
952 3 0.00
953 4 0.00
954 4 0.00
955 4 0.00
956 14 0.00
957 3 0.00
958 3 0.00
959 7 0.00
960 4 0.00
961 11 0.00
962 12 0.00
963 5 0.00
964 5 0.00
965 4 0.00
966 3 0.00
967 1 0.00
968 8 0.00
969 13 0.00
970 216 0.01
971 3 0.00
973 208 0.01
974 4 0.00
975 3 0.00
977 10 0.00
978 6 0.00
979 4 0.00
980 6 0.00
981 361 0.02
982 36 0.00
983 2 0.00
988 3 0.00
989 4 0.00
990 2 0.00
991 7 0.00
992 1 0.00
993 2 0.00
995 2 0.00
996 5 0.00
997 1 0.00
998 2 0.00
999 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA
Found at i:6136524 original size:26 final size:26
Alignment explanation
Indices: 6136488--6136538 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
6136478 GTGGACTTAG
*
6136488 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
6136514 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTACCAGTCTA
6136539 TGATCAAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:6139987 original size:26 final size:26
Alignment explanation
Indices: 6139958--6140088 Score: 192
Period size: 26 Copynumber: 5.0 Consensus size: 26
6139948 GTTGACTTAT
* * *
6139958 GCATACGGAGTTCATACGCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
6139984 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
6140010 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
6140036 GCATACAGA-TCTCATTCCTAGTCTAA
1 GCATACAGAGT-TCATTCCCAGTCTAA
6140062 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6140088 G
1 G
6140089 ATCGGACCGG
Statistics
Matches: 94, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
25 1 0.01
26 92 0.98
27 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6140961 original size:26 final size:26
Alignment explanation
Indices: 6140931--6141034 Score: 165
Period size: 26 Copynumber: 4.0 Consensus size: 26
6140921 GTTGACTTAG
*
6140931 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
6140957 CCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
6140983 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6141009 GCATACAGAGTTCATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6141034 G
1 G
6141035 ATCAAATCGG
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
25 9 0.13
26 62 0.87
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6141937 original size:26 final size:26
Alignment explanation
Indices: 6141901--6141953 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6141891 GTTGACTTAG
*
6141901 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6141927 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6141953 G
1 G
6141954 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6148207 original size:26 final size:26
Alignment explanation
Indices: 6148171--6148221 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
6148161 TGACTTAGGA
*
6148171 ATACGGAGTTCACTCCCAGTCTAAGC
1 ATACGAAGTTCACTCCCAGTCTAAGC
*
6148197 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCACTCCCAGTCTAAG
6148222 GTTGGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCACTCCCAGTCTAAGC
Found at i:6149977 original size:26 final size:26
Alignment explanation
Indices: 6149947--6149999 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6149937 GTTGACTTAG
6149947 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
* * *
6149973 GCATATGGAGTTCATTCCCAGTTTAA
1 GCATACGGAATTCATTCCCAGTCTAA
6149999 G
1 G
6150000 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:6151788 original size:26 final size:26
Alignment explanation
Indices: 6151752--6151804 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6151742 GTTAACTTAG
* *
6151752 GCATACGGAGTTTACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCAAGTCTAA
*
6151778 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCACTCCAAGTCTAA
6151804 G
1 G
6151805 GTTGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCAAGTCTAA
Found at i:6152668 original size:26 final size:26
Alignment explanation
Indices: 6152632--6152684 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6152622 GTTTATTTAG
6152632 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6152658 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
6152684 G
1 G
6152685 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:6154460 original size:25 final size:26
Alignment explanation
Indices: 6154409--6154460 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6154399 GTTGACTTAG
*
6154409 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6154435 GCATACGAAGTTCATT-CCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
6154460 G
1 G
6154461 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:6155345 original size:26 final size:26
Alignment explanation
Indices: 6155309--6155360 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
6155299 GTTGACTTAG
6155309 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6155335 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6155361 TATCGGACTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6156230 original size:26 final size:26
Alignment explanation
Indices: 6156183--6156235 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6156173 GCTGAGTTAG
* *
6156183 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
*
6156209 GCATACGGAGATCATTCTCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
6156235 G
1 G
6156236 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:6158892 original size:876 final size:873
Alignment explanation
Indices: 6156973--6159535 Score: 3817
Period size: 876 Copynumber: 2.9 Consensus size: 873
6156963 ACCGGAACCG
* * * *
6156973 CGGCTTGCGGCATCCTCGCCCCTCTAGCCG-CTGAGCACCC-GCA-GCGTCCGTTTCGT-GGTTT
1 CGGCTTGC-GCATCC-CGCCACTCTGGCCGACTGAGC-CCCTGCACGC-T-CGTTTCATGGGTTG
* * *
6157034 ACTTAGGAATACCAGAGTTCA-TCCCAGTCTAAGATC-G---GAATCAGATGAGGTTGC-GCAAG
61 ACTTAGGCATA-CGGAGTTCATTCCCAGTCTAAGATCAGACCGAA-CCGA-G-GGTTGCAGC-AG
* * * * * * **
6157093 CACCATG-CTGTCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAG
121 CA-CATGCCGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * ** * ** *
6157157 CATCATCAGAGAACCTGATCGACATCATTGGGGTT-------TC-GGGGATCAGGGGGTGTGCGC
185 -ATCGTCGGTGAACCTGATCGACGGCATTAGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGC
* *
6157214 ACATGATGTGCGATGGGTGCTAGTACTTGGCCCATATATTGGCCCCCTATCCCTCATTC-AACCT
249 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-TCAAACCT
* *
6157278 CGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAA
313 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAA
* * *
6157343 GTGTTTGAAATGGGGACACTTTTTTGCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGC
378 GTGTCTGAAATAGGGACAC-TTTTT-CAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGC
* ** * * * *
6157408 T-AAATTTTTTGCGCAT-CCAACAAAAAAACAAGGATCACATCTACCAAGTTTGGGGCCAAAACT
441 TGAATTTTTTTATGTATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * ** * *
6157471 CCTTCCAAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
506 CCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAA
6157536 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
571 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
6157601 ATAAAAATGGCATTGGCACACAGAAATATGTAGATGTACCAAAACCCACCTACCACCCTATCGAT
636 ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGAT
* *
6157666 CCACGGCTTGCGCATTCCGTCTCTCTGGCCGGCATAGTACCCGCCCGACCACCCGCCCGCTCATT
701 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTACCCGCCCGCCCACCCGCCCGCTCATT
6157731 TCATCGGTTCGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGAATTGGACCGAGGGTTCT
766 TCATCGGTTCGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGAATTGGACCGAGGGTTCT
*
6157796 AGCGGCAGCATCAGCAGCACATAGAGGGGGACCTGGGGGATCC
831 AGCGGCAGCATCAGCAGCACACAGAGGGGGACCTGGGGGATCC
*
6157839 CGGCTTGCGCATCCCGCCACTCTGGCCGACTGAGTCCCTGCACGCTCGTTTCATGGGTTGACTTA
1 CGGCTTGCGCATCCCGCCACTCTGGCCGACTGAGCCCCTGCACGCTCGTTTCATGGGTTGACTTA
*
6157904 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGTGGGTTGCAGCAGCACATGCCGG
66 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCACATGCCGG
6157969 GCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGTG
131 GCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG-ATCGTCGGTG
**
6158034 AACCTGATCGACGGCATTAGGGTTCCGGCGATCGTGGGGGCCGGGGGGTGTGCGCACATGATGAC
195 AACCTGATCGACGGCATTAGGGTTCCGGCGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTG
6158099 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
259 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
6158164 ACCCCCTTAAAGAGCATTTTAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
324 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
6158229 AGGGACACTTTGTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTA
389 AGGGACACTTT-TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTA
* * **
6158294 TGTATGGCAACAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAAGTCCTTTGGAAAAA
453 TGTATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
6158359 GTTTTAAAAAATCCTGAACCGTAAAAGGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
518 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
* **
6158424 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGTGATAAAAATGGCA
583 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
6158489 TTGGCACACAAAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATTGATCCACGGCTTGCG
648 TTGGCACACAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
6158554 CAACCCGTCTCTCTGGCCGGCATAGTACCCGCCCGCCCACCCGCCCGCTCATTTCGTCGGTTCGC
713 CATCCCGTCTCTCTGGCCGGCATAGTACCCGCCCGCCCACCCGCCCGCTCATTTCATCGGTTCGC
6158619 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGAATTGGACCGAGGGTTCTAGCGGCAGCATC
778 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGAATTGGACCGAGGGTTCTAGCGGCAGCATC
* *
6158684 GGTAGCACACAGAGGGGGACCTGGGGGATCC
843 AGCAGCACACAGAGGGGGACCTGGGGGATCC
6158715 CGGCTTGCGCATCCCGCCACTCTGGCCGACTGAGCCCCTGCACGCTCGTTTCATGGGTTGACTTA
1 CGGCTTGCGCATCCCGCCACTCTGGCCGACTGAGCCCCTGCACGCTCGTTTCATGGGTTGACTTA
* *
6158780 GGCATACGGAGTTCATTCCCAGTCTAAGCTCAGACCGGACCGAGGGTTGCAGCAGCACATGCCGG
66 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCACATGCCGG
6158845 GCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGATCGTCGGTGA
131 GCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGATCGTCGGTGA
6158910 ACCTGATCGACGGCATTAGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
196 ACCTGATCGACGGCATTAGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
6158975 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
261 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
6159040 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAG
326 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAG
*
6159105 GGACACGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
391 GGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATG
*
6159170 TATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTGCCGAAAAAAT
455 TATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
6159235 TTTGAAAAAT-CTCGAACC-TCAAAAAGTTTCAAAAATCTTGAAAAAATAGAAAAA-GAAGTCGT
520 TTTAAAAAATCCT-GAACCGT-AAAAAGTTTCAAAAATCATG-AAAAATA-AAAAACG-AGTCGT
* *
6159297 CTTGCCATGAAACTTCACGTGAAGGCTTACGGGACCATTGTATGAATTTACAAGCCATAAAAATC
580 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** ***
6159362 GCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCATTACTT
645 GCATTGGCACACAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
6159427 GCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGTCTGCTCGCCTGTCTGCCCGCTCGTTT
710 GCGCATCCCGTCTCTCTGGCCGGCATAGTACCCGCCCG-C--C-CACC---C-GCCCGCTCATTT
* * * *
6159492 AATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
767 CATCGGTTCGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT
6159536 CGAACCAGAC
Statistics
Matches: 1545, Mismatches: 114, Indels: 58
0.90 0.07 0.03
Matches are distributed among these distances:
864 30 0.02
865 48 0.03
866 99 0.06
867 3 0.00
868 2 0.00
869 3 0.00
873 5 0.00
874 353 0.23
875 221 0.14
876 725 0.47
877 1 0.00
879 1 0.00
880 3 0.00
883 1 0.00
884 50 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (873 bp):
CGGCTTGCGCATCCCGCCACTCTGGCCGACTGAGCCCCTGCACGCTCGTTTCATGGGTTGACTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCAGCAGCACATGCCGG
GCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGATCGTCGGTGA
ACCTGATCGACGGCATTAGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAG
GGACACTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGT
ATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCATAGTACCCGCCCGCCCACCCGCCCGCTCATTTCATCGGTTCGCTTA
GGCATATGGAGTTCATTCCCAGTCTAAGATTGAATTGGACCGAGGGTTCTAGCGGCAGCATCAGC
AGCACACAGAGGGGGACCTGGGGGATCC
Found at i:6160402 original size:26 final size:26
Alignment explanation
Indices: 6160366--6160416 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
6160356 TGACTTAGGA
*
6160366 ATACGGAGTTCATTCCCAGTGTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
6160392 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
6160417 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:6160898 original size:27 final size:27
Alignment explanation
Indices: 6160840--6160898 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
6160830 ACTCCTTCCG
* **
6160840 AAAAAATTTTAAAAAATCCCGAACCAT
1 AAAAAATTTTAAAAAATCACGAAAAAT
*
6160867 AAAAAATTTT-GAAAATCACGAAAAAT
1 AAAAAATTTTAAAAAATCACGAAAAAT
*
6160893 AGAAAA
1 AAAAAA
6160899 CGAGTCGTCT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 17 0.63
27 10 0.37
ACGTcount: A:0.61, C:0.12, G:0.07, T:0.20
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCACGAAAAAT
Found at i:6161301 original size:26 final size:26
Alignment explanation
Indices: 6161265--6161320 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
6161255 TGGGTTGACT
**
6161265 TAAGCATACGGAGTTCATTTCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
6161291 TAAGCATACGGAGTTCATCCCCAGTC
1 TAAGCATACGGAGTTCATCCCCAGTC
6161317 TAAG
1 TAAG
6161321 ATCGGCCCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATCCCCAGTC
Found at i:6162199 original size:26 final size:26
Alignment explanation
Indices: 6162163--6162215 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
6162153 GTTGACTTAG
6162163 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6162189 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6162215 G
1 G
6162216 ATCGAACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6163089 original size:26 final size:26
Alignment explanation
Indices: 6163053--6163104 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
6163043 GTTGACTTAG
6163053 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
6163079 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
6163105 AATCAAACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:6163989 original size:25 final size:26
Alignment explanation
Indices: 6163955--6164009 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 26
6163945 TGGGTTGACT
*
6163955 TAAGCATACGGAGTT-ATTCTCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
6163980 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
6164006 TAAG
1 TAAG
6164010 ATCGGACCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 15 0.54
26 13 0.46
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:6163998 original size:904 final size:902
Alignment explanation
Indices: 6159507--6164344 Score: 6500
Period size: 904 Copynumber: 5.4 Consensus size: 902
6159497 GTTGGCTTAG
* * *
6159507 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
6159572 CTCGGGCATGTGTTGGTGCCGTATTTTTCTTCG-CTGGGGCACCATCGCCAGAGCATCAACGGAG
66 CTCGGGCATGTGTTGGTGTCGTATTTTTCTTCGTC-GGGGCACCATCACCGGAGCATCATCGGAG
* * * * *
6159636 AACCTGACCGACGGCATTCGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGCACACATAATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCC--GGGGGGTGTGCGCACATGATG
*
6159701 TACGA----TG--GG----TGG----TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT-
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
6159751 -CACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
6159815 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTTGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
6159880 TGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CAACGTTTGGGGCCAAAACTCCTTCCG-A
388 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCCGAA
* * * * *
6159943 AAAATTTTTAAAAATCCCGAA-CGACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCA
452 AAAATTTTAAAAAATCCCGAACCG-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
6160007 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC-TCTGTATGAATTTACAAGCCATAAAAA
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT-TGTATGAATTTACAAGCCATAAAAA
* * *
6160071 TGGCATTGGCATGCAAAAATATG-A-A---GCCTAAACCCTCCTACCACCCTATCGATCCACGAC
580 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * ** *
6160131 TTGCGCGTCCCATCTCTATGGCCGGCGTAATGTTCGCCCGCCCACCCGT-CCGCTCGTTTCGTCG
645 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC-TCCCGCTCGTTTCGTCG
* *
6160195 GTTGGCTTAGGCATAC-GATGTTCATTCCCAGTCTAAGATC-AGACCGAACTGAGGTTTGCGGTA
709 GTTGGCTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATCGA-ACCGAACTGAGGGTTGCGGCA
* * ** *
6160258 GTAGGATCGGCAGCATACAGAGGGTGACCCGGCCGATCCCTGGCTTGCGCATCCTGCCCCTCTGG
772 GTAGGATCGACAGCACACAGAGGG-GACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGG
* *
6160323 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTGT
836 CCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
6160388 AA
901 AA
* * * * *
6160390 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGATCAAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTACGGCAGCACATGCTGG
* * * * *
6160454 GCTAGGGCATGTGTTGGTGCCGTATTTTTCTTCATCGGGGCACGATCACCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAG
* * * *
6160519 AACCTGATCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCC--GGGGGGTGTGCGCACATGATG
* * *
6160584 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTTGAGAAATC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
6160649 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
6160714 ATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
6160779 TATGCATG-CAAAAAAATTACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** **
6160843 AAATTTTAAAAAATCCCGAACCATAAAAAATTTTGAAAATCACGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
6160908 TTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
6160973 CATTGGCACGCAGATATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCAAGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * *
6161038 CGCATCTCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCCGCCCGATCATTTTGTCAGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTG
* *
6161103 TCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACC-AGACTGAGGGTTGCAGCAGTAG
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGA-ACTGAGGGTTGCGGCAGTAG
* * * * *** *
6161166 GATTGGCAGCACACAGAAGGGGACCCGGTCGATCCCCAACTTTTACATCCCACCCCTCTGGCCGG
776 GATCGACAGCACACAG-AGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
6161231 TTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAAGCATACGGAGTTCATTTCCAGTCTAA
840 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
6161294 GCATACGGAGTTCATCCCCAGTCTAAGATCGGCCCAGACCGAGGGTTACGACAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * *
6161359 CCCGAGCATGTGTTGGTGTCGCATTTTTCTTTGTCGGGGCACCATCGA-CGGAGCATCACCGGAG
66 CTCGGGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGGGCACCATC-ACCGGAGCATCATCGGAG
* * * *
6161423 AACCTGACCGGCGACATTGGGGTTCCGACAATC-GAGGGG-CAGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
6161486 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
6161551 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAGT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
6161615 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTGTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * *
6161680 TGCATGCCAACAAAAAA-ACAAGGATCACGTCTACCAAGTTTGGGGTAAAAAATCCTT-CTAAAG
390 TGCATGCCAA-AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA-
6161743 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
6161808 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAAAGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
6161873 CATTGGTATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
6161937 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCT---ACTCGTTTCGTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTG
* * * * * * * *
6161998 GCTTAGGCATACGAAGCTCATTCCCAGTCTAAGAT-TAGACTGGACCGAGGTTTGCGACAGTAGG
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGAACTGAGGGTTGCGGCAGTAGG
* * * * ** *
6162062 ATTC-ACAGCACGCAGAGAGCGACTCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGA
777 A-TCGACAGCACACAGAG-GGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGG
*
6162126 CTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
6162189 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCAGCCGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* *
6162254 CTCGGGCATGTGTTGGTGTCATATTTTTCTTTGTCGGGGCACCAT---C---G---C--CGGAGA
66 CTCGGGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGA
* *
6162308 ACCTGACCGACGGCATTGGGGTTCTGACGATCAGG-TGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGAGGGGCCGGGGGGTGTGCGCACATGATGTG
6162372 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
6162437 -CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
6162501 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
6162566 TGCATGCCAACAAAAATAGAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAGAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
6162631 ATTTTCAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGGGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
6162696 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
6162761 TTGACACGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
6162826 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCACACCCGCCCGCCCGCTTGTTTCGTCGGTTGGC
650 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGC
* * * * *
6162891 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATTGAGGGTTGTGGCA-TCAGGAT
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGCGGCAGT-AGGAT
* * * * *
6162955 TGACAGCATACAGAGGGGCCCCGACCGATCCCC-GCCTTGCGCATCCTGCCCCTCTGGCCGGCTG
779 CGACAGCACACAGAGGGGACCCGGCCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
6163019 AGCACCCGCACACTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
6163079 GCATATGGAGTTCATTTCCAGTCTAAAATCAAACCAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* * * *
6163144 CTTGGGCATGTGTTGGTGTCGTATTTTTCTTTGTCAGGGCACCATTACCGGAGCATCATCGGAGA
66 CTCGGGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGA
** * * * * *
6163209 ACCTGACCGACGGCATTGGACTTTCGGCGATC-GAGGGGCCGAGGGTGTGTGTGCACGTGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCG-GGGGGTGTGCGCACATGATGTG
* * *
6163273 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCGCTTATCGCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
6163338 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTTTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
6163403 GGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTTCGAGTTTTTAGCTGAATTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
6163468 GTGCATGCCAAAAAAAATACGAGGGTCACGCCTACCAAGTTTAGGGGCAAAAAATCCTTTCGAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCCGAAA
* ** *
6163533 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
6163598 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
6163663 CATTGACATGCAGAAATATGAA-ATGTGCCTAAACCCACCTCCCACCTTACCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * ** * *
6163727 CGTATCCTGTCACTCTGGCTGGCGTAGTGCCCGCTCGCCCTTCCTCCCGCTCGTTTCATCGGTTC
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTG
* * * * *
6163792 GCTTAGGCATACGGAGTTCATTCCTAATCTAAGATCGAATCGAATTGAGGGTTGTGGCAGTAGGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGCGGCAGTAGGA
** * * * * *
6163857 TCGACAGCACGTAGAGGAGGATCCGACCGATCCCCAGCTTACGCATCCCGCCCCCTCTGGCTGGT
778 TCGACAGCACACAGAGG-GGACCCGGCCGATCCCCAGCTTGCGCATCCCG-CCCCTCTGGCCGGC
* * * *
6163922 TGAGCACCCACACGCTCGTTTCATGGGTTGACTTAAGCATACGGAGTT-ATTCTCAGTCTAA
841 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
6163983 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAACTGAGGGTTACGG-AGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACCGAGGGTTACGGCAGCACATGCTGG
** ** ** * ** *
6164046 TTTCGGGCATGTGTTGGTGTCACATTTTTCTTCACCGGGGCACCATCATCGGAGCATTGTCAGAG
65 GCTCGGGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAG
** * * *
6164111 AACCTGATTGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGG-CCGGGGG-GTGTGCGCACATGATG
* * *
6164176 TGCGATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTAATCAAACCTCGAGCACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
6164241 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
6164306 ATGGGGACAC-TTTTTCAAATGGTCGCAAAATCTTG-ACAC
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
6164345 CTAGGCAAGC
Statistics
Matches: 3491, Mismatches: 385, Indels: 138
0.87 0.10 0.03
Matches are distributed among these distances:
882 1 0.00
883 173 0.05
884 35 0.01
885 8 0.00
886 409 0.12
887 73 0.02
888 2 0.00
889 4 0.00
890 197 0.06
891 78 0.02
892 1 0.00
893 4 0.00
894 2 0.00
895 269 0.08
896 2 0.00
897 35 0.01
898 49 0.01
899 467 0.13
900 284 0.08
901 120 0.03
902 98 0.03
903 320 0.09
904 650 0.19
905 210 0.06
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACTGAGGGTTGCGGCAGTAGGATCG
ACAGCACACAGAGGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:6171613 original size:60 final size:58
Alignment explanation
Indices: 6171425--6171711 Score: 409
Period size: 59 Copynumber: 4.9 Consensus size: 58
6171415 TTTTTTGTAG
*
6171425 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTTGATTT-TCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAATTTT-ATTTCT-AA
* ** *
6171484 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTTGAAATTTTATTTCTAA
6171543 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTTGATTT-TCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGAAATTTT-ATTTCT-AA
*
6171603 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAA-TTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAATTTTATTTCTAA
* *
6171660 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTTGGAATTTT
1 GGAAAATTGATACTTTCAACTTTTCCC-CAAAA-ATATTTTTTTGAAATTTT
6171712 TTATTTTTAT
Statistics
Matches: 206, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
57 33 0.16
58 8 0.04
59 107 0.52
60 58 0.28
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.44
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAATTTTATTTCTAA
Found at i:6171635 original size:119 final size:117
Alignment explanation
Indices: 6171425--6171711 Score: 479
Period size: 117 Copynumber: 2.4 Consensus size: 117
6171415 TTTTTTGTAG
*
6171425 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAATTTTGATTTTCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTTGATTTTCAAGGAAA
*
6171489 ATTGATACTTTCAACTTTTCCTCAAAAACCCT-TTTTTTGAAAATTTATTTCTAA
66 ATTGATACTTTCAACTTTTCCCCAAAAA---TATTTTTTGAAAATTTATTTCTAA
6171543 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTTGATTTTCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTTGATTTTCAAGGAAA
*
6171608 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAA
66 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAA
* *
6171660 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTTGGAATTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATAT-TTTTTTTGAAATTTT
6171712 TTATTTTTAT
Statistics
Matches: 161, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
116 1 0.01
117 56 0.35
118 49 0.30
119 55 0.34
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.44
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTTGATTTTCAAGGAAA
ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTCTAA
Done.