Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 46 of 129
Found at i:6171718 original size:119 final size:118
Alignment explanation
Indices: 6171425--6171718 Score: 463
Period size: 119 Copynumber: 2.5 Consensus size: 118
6171415 TTTTTTGTAG
*
6171425 GGAAAATTGATACTTTCAACTTTTCCCCAAAA-ATA-TTTTTTGGAAATTTTGATTTTCAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAATATATTTTTTTGGAAATTTTGATTTTCAAGGAA
*
6171488 AATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTGAAAATTTATTTCTAA
66 AATTGATACTTTCAACTTTTCCCCAAAAA--CTTTTTTTGAAAATTTATTTCTAA
6171543 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATAT-TTTTTTT-GAAATTTTGATTTTCAAGGA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATATTTTTTTGGAAATTTTGATTTTCAAGGA
*
6171606 AAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTGGAAATTTATTTCTAA
65 AAATTGATACTTTCAACTTTTCCCCAAAAACT-TTTTTTGAAAATTTATTTCTAA
* *
6171660 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTTGGAATTTTTTATTTT
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATATTTTTTTGGAAATTTTGATTTT
6171719 TATTTAAAGA
Statistics
Matches: 164, Mismatches: 5, Indels: 13
0.90 0.03 0.07
Matches are distributed among these distances:
116 4 0.02
117 53 0.32
118 31 0.19
119 68 0.41
120 8 0.05
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.45
Consensus pattern (118 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATATTTTTTTGGAAATTTTGATTTTCAAGGAA
AATTGATACTTTCAACTTTTCCCCAAAAACTTTTTTTGAAAATTTATTTCTAA
Found at i:6171834 original size:20 final size:21
Alignment explanation
Indices: 6171809--6171847 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
6171799 AACAAATAAA
6171809 CAAAGAAAGA-AAAAAAAATT
1 CAAAGAAAGAGAAAAAAAATT
6171829 CAAAGAAAGAGAAAAAAAA
1 CAAAGAAAGAGAAAAAAAA
6171848 AAAAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.77, C:0.05, G:0.13, T:0.05
Consensus pattern (21 bp):
CAAAGAAAGAGAAAAAAAATT
Found at i:6172200 original size:19 final size:20
Alignment explanation
Indices: 6172157--6172201 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
6172147 AACACCGGTG
* *
6172157 CCGGATTCTGGAAATTTTCG
1 CCGGAATCTGGAAATTTTCA
*
6172177 TCGGAATCTGGAAA-TTTCA
1 CCGGAATCTGGAAATTTTCA
6172196 CCGGAA
1 CCGGAA
6172202 GTTGACCGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (20 bp):
CCGGAATCTGGAAATTTTCA
Found at i:6190321 original size:37 final size:37
Alignment explanation
Indices: 6190271--6190355 Score: 161
Period size: 37 Copynumber: 2.3 Consensus size: 37
6190261 ACCTAGCTCA
*
6190271 TATTCACCTTGCCTACATTGTTCCATCGACTAAAGGC
1 TATTCACCTTGCCTACATTATTCCATCGACTAAAGGC
6190308 TATTCACCTTGCCTACATTATTCCATCGACTAAAGGC
1 TATTCACCTTGCCTACATTATTCCATCGACTAAAGGC
6190345 TATTCACCTTG
1 TATTCACCTTG
6190356 AAGACCTGTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (37 bp):
TATTCACCTTGCCTACATTATTCCATCGACTAAAGGC
Found at i:6201430 original size:22 final size:22
Alignment explanation
Indices: 6201378--6201419 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
6201368 TGTGACATAT
*
6201378 GCACATGCCTTGACCACCATTA
1 GCACATGCCTCGACCACCATTA
6201400 GCACATGCCTCGACCACCAT
1 GCACATGCCTCGACCACCAT
6201420 CGTCACATGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.26, C:0.40, G:0.14, T:0.19
Consensus pattern (22 bp):
GCACATGCCTCGACCACCATTA
Found at i:6227834 original size:130 final size:127
Alignment explanation
Indices: 6227227--6228065 Score: 414
Period size: 129 Copynumber: 6.5 Consensus size: 127
6227217 CCCCTTCTTT
* ** * * * *
6227227 TATAATTATTTACTAACTAATCTTTTA-GAAAATTACCAAAAT-GCCTTTTCCATTGTGTGATAT
1 TATAATTATTTACTAAATAATCCATTATG-AAATTACCAAAATACCCTTTT-CATTATATGATAA
* * * * * *
6227290 GAAATTTACATATAGCCAAATTGACTATTATGTCCTCAAATCATATTTACAA--AAAA-ACC-CA
64 GAAATTGACATGTGGCCAAATGGACTATTAT-ACCTCATA-CATA---ACAATGAAAATACCTC-
*
6227351 TTCTTT
123 TTC-TC
* *
6227357 TTTAATTATTTACTAAATCATAT-C-TTATGAAATTACCAAAAT-CCCTTTCCATTATATGATAA
1 TATAATTATTTACTAAAT-A-ATCCATTATGAAATTACCAAAATACCCTTTTCATTATATGATAA
* * * * * * * ** * *
6227419 GAATTTAACATATGACAAAATTGACTATTA-AGTGCTCATATCATAATTACGAGAATACC-CATT
64 GAAATTGACATGTGGCCAAATGGACTATTATA--CCTCATA-CATAACAATGAAAATACCTC-TT
* *
6227482 TTAT
125 CT-C
* *** * *
6227486 TAAAATTATTTACTAAATAATCTC-TTATGAAATTATTGAAATACCATTTTCATTATATGATAGG
1 TATAATTATTTACTAAATAATC-CATTATGAAATTACCAAAATACCCTTTTCATTATATGATAAG
* * ** ** * * ** * * * *
6227550 AAATTAATATGTGATCAAATTAACAATTACACCTTCATATCATAATTACGTAAATGTTCCTTTTC
65 AAATTGACATGTGGCCAAATGGACTATTATACC-TCATA-CATAACAATG-AAA-ATACCTCTTC
6227615 T-
126 TC
* * * * *
6227616 TATAATTATTTAC-AAATAATCCCTTATGAAAGTACAAAAATA-TCATTTCTATTATATGATAAG
1 TATAATTATTTACTAAATAATCCATTATGAAATTACCAAAATACCCTTTTC-ATTATATGATAAG
* ** * * *
6227679 AAATTGACATGTTGTTAAATAGACTATCATGCTCTCATACTATAACAATGAAAATACCTCTTCTC
65 AAATTGACATGTGGCCAAATGGACTATTATAC-CTCATAC-ATAACAATGAAAATACCTCTTCTC
* * * *
6227744 ATATAACTATTTTCTAAATAATCCATTATGTAATTACCAAAATACCCTTTTCATTATATGATAAA
1 -TATAATTATTTACTAAATAATCCATTATGAAATTACCAAAATACCCTTTTCATTATATGATAAG
* * * * *
6227809 AAATTGATATGTGGCCAAATGGACTATTATTCC-CACGTACCAT--GATTGCTAAAATACCCCTT
65 AAATTGACATGTGGCCAAATGGACTATTATACCTCA--TA-CATAACAATG--AAAATACCTCTT
6227871 CTC
125 CTC
** *
6227874 TAATAATTA-TTACTAAATAAT-CACTTACT-AAATTATGAAAATACCCTTTCCATTATATGATA
1 T-ATAATTATTTACTAAATAATCCA-TTA-TGAAATTACCAAAATACCCTTTTCATTATATGATA
* * * * *
6227936 AGAAGTTTACATGTGGCCAAATGAACTATTATACCTTCATA-A-AACAAATACAAAAGTATCTCT
63 AGAAATTGACATGTGGCCAAATGGACTATTATACC-TCATACATAAC-AAT-GAAAA-TACCTCT
6227999 TCTC
124 TCTC
* * **
6228003 TTATAGTTATTCT-CTAAATAATCTC-CTATGAAATTACCAAAATATTCTTTTCATTATATGATA
1 -TATAATTATT-TACTAAATAATC-CATTATGAAATTACCAAAATACCCTTTTCATTATATGATA
6228066 TACATCAACA
Statistics
Matches: 553, Mismatches: 110, Indels: 92
0.73 0.15 0.12
Matches are distributed among these distances:
126 2 0.00
127 11 0.02
128 25 0.05
129 258 0.47
130 234 0.42
131 14 0.03
132 9 0.02
ACGTcount: A:0.39, C:0.16, G:0.07, T:0.38
Consensus pattern (127 bp):
TATAATTATTTACTAAATAATCCATTATGAAATTACCAAAATACCCTTTTCATTATATGATAAGA
AATTGACATGTGGCCAAATGGACTATTATACCTCATACATAACAATGAAAATACCTCTTCTC
Found at i:6228482 original size:132 final size:132
Alignment explanation
Indices: 6228241--6228482 Score: 371
Period size: 132 Copynumber: 1.8 Consensus size: 132
6228231 TTTTCATTAA
* * *
6228241 ATGATAAGAAATTGACATGTTGCCAAATTGACTATTATGCCTTTATACCATAATTACAAATATAC
1 ATGATAAGAAATTGACATGTTGCCAAATGGACGATTATGCCTTTATACCATAATTACAAAAATAC
* **
6228306 CCTATCTTTTATAATTATTTACTAAATAATTCCCTATGAAATTACAAAAAAATTTCCTTTCTAAT
66 CCTATCTTTTATAATTATTTAATAAATAATTCCCTAAAAAATTACAAAAAAATTTCCTTTCTAAT
6228371 AT
131 AT
* *
6228373 ATGATAAGAAATTGACATG-TGACCAAATGGACGATTATGCCTTTATACTATTATTACAAAAATA
1 ATGATAAGAAATTGACATGTTG-CCAAATGGACGATTATGCCTTTATACCATAATTACAAAAATA
*
6228437 CCCT-TCTTTTATAATTATTTAATAAATAATTCCTTAAAAAGATTAC
65 CCCTATCTTTTATAATTATTTAATAAATAATTCCCTAAAAA-ATTAC
6228483 CAAATTACTC
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
131 34 0.34
132 65 0.66
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (132 bp):
ATGATAAGAAATTGACATGTTGCCAAATGGACGATTATGCCTTTATACCATAATTACAAAAATAC
CCTATCTTTTATAATTATTTAATAAATAATTCCCTAAAAAATTACAAAAAAATTTCCTTTCTAAT
AT
Found at i:6228840 original size:130 final size:127
Alignment explanation
Indices: 6228605--6229413 Score: 610
Period size: 128 Copynumber: 6.3 Consensus size: 127
6228595 TGGCCTAAGA
* * *
6228605 AATTATTTACTAAATAATCACCTAAGAAATTACTAAAATGACCTTTCCATTATATGATAAGAAAT
1 AATTATTTACTAAATAATCTCCTATGAAATTACCAAAAT-ACCTTTCCATTATATGATAAGAAAT
* * * *
6228670 TGACATAAGGCCT-AATTGACTATTATGCCCTCAT-CACATAATTACAAAGATATCCCATCTCTT
65 TTACATATGG-CTAAATGGACTATTATGCCCTCATAC-CATAATTACAAA-ATA-CCCTTCTCTT
6228733 AT
126 AT
*
6228735 AATTATTTACTAAATAATCTCCTATGAAATTACCAAAATAACCTTTCCAATATATGATAAGAAAT
1 AATTATTTACTAAATAATCTCCTATGAAATTACCAAAAT-ACCTTTCCATTATATGATAAGAAAT
* * ** * * *
6228800 TAACATATGGCTAAATGGA-TAGCTATGCTTTCATACCATAATTACGAATATACTCATCCTCTTA
65 TTACATATGGCTAAATGGACTA-TTATGCCCTCATACCATAATTAC-AAAATAC-CCTTCTCTTA
6228864 T
127 T
* * * * * * *
6228865 AATTATTTTCTAAATAATCT-TTCATGTAATTACTAAAATGCCCTTCCATTGTATGATAAGAAAT
1 AATTATTTACTAAATAATCTCCT-ATGAAATTACCAAAATACCTTTCCATTATATGATAAGAAAT
** * * * * * ** *
6228929 GGACATCTTGCCT-AATAGAATATTATGCCTTCATACCATAATTATGGAAATACCCCTTCTTTTA
65 TTACAT-ATGGCTAAATGGACTATTATGCCCTCATACCATAATTA-CAAAATA-CCCTTCTCTTA
*
6228993 A
127 T
* * * *
6228994 AATTATTTAATAAATAATCT-CTCATGAAATTACCAAAATGCTCTTTTCATTGTATGATAAGAAA
1 AATTATTTACTAAATAATCTCCT-ATGAAATTACCAAAATAC-CTTTCCATTATATGATAAGAAA
* * * * * *
6229058 TTTAC--GTGG-TCAAATTGACTATTATGCCATCATATCATAATGACAAAAATATCCTTTCTCTT
64 TTTACATATGGCT-AAATGGACTATTATGCCCTCATACCATAATTAC-AAAATA-CCCTTCTCTT
*
6229120 AC
126 AT
** * * * *
6229122 AATTATTTTTTAAATAA-CCCCTTATGGAATTACGAAAATA-CTTTCCATTATTTGATAAGAAAT
1 AATTATTTACTAAATAATCTCC-TATGAAATTACCAAAATACCTTTCCATTATATGATAAGAAAT
* * * * * *
6229185 TTACTTTTGG-TGAAATCGACTACTATTCCCTCATATCATAATTACGAAAATACCTCTTCTCTTA
65 TTACATATGGCT-AAATGGACTATTATGCCCTCATACCATAATTAC-AAAATACC-CTTCTCTTA
6229249 T
127 T
* * * *
6229250 AATTA-TTACTAAATAA-CCCCATATTAAACTACCAAAATACTCTTTCCATTATA-GAGAA-AAA
1 AATTATTTACTAAATAATCTCC-TATGAAATTACCAAAATAC-CTTTCCATTATATGATAAGAAA
** * * * * * * *
6229311 GTTTACA-AGTGGCCGATTGGCCTATTATGCTCTCATACCATAGTTATAAAAGTACTCTTTCTTT
64 -TTTACATA-TGGCTAAATGGACTATTATGCCCTCATACCATAATTACAAAA-TAC-CCTTCTCT
6229375 TAT
125 TAT
6229378 AATTATTTACTAAATAAT-TCCTTATGAAATTACCAA
1 AATTATTTACTAAATAATCTCC-TATGAAATTACCAA
6229414 CGTGCCATTT
Statistics
Matches: 545, Mismatches: 106, Indels: 57
0.77 0.15 0.08
Matches are distributed among these distances:
126 25 0.05
127 39 0.07
128 172 0.32
129 141 0.26
130 165 0.30
131 3 0.01
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.36
Consensus pattern (127 bp):
AATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCTTTCCATTATATGATAAGAAATT
TACATATGGCTAAATGGACTATTATGCCCTCATACCATAATTACAAAATACCCTTCTCTTAT
Found at i:6229316 original size:128 final size:126
Alignment explanation
Indices: 6228604--6229304 Score: 402
Period size: 130 Copynumber: 5.4 Consensus size: 126
6228594 ATGGCCTAAG
* * * *
6228604 AAATTATTTACTAAATAATCACCTAAGAAATTACTAAAATGAC-CTTTCCATTATATGATAAGAA
1 AAATTATTTAATAAATAA-CCCCTATGAAATTACCAAAAT-ACTCTTTCCATTATA-GATAAGAA
* * * * * * * *
6228668 ATTGACATAAGGCCTAATTGACTATTATGCCCTCATCA-CATAATTAC-AAAGATATCC-CATCT
63 ATTTACGT--GGTCAAATCGACTACTATGCCATCAT-ATCATAATTACGAAA-ATA-CCTCTTCT
6228730 CTTA
123 CTTA
* * * *
6228734 TAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATAAC-CTTTCCAATATATGATAAGAA
1 AAATTATTTAATAAATAA-CCCCTATGAAATTACCAAAAT-ACTCTTTCCATTATA-GATAAGAA
* * * ** * * *
6228798 ATTAACATATGG-CTAAATGGA-TAGCTATGCTTTCATACCATAATTACGAATATA-CTCATCCT
63 ATTTAC--GTGGTC-AAATCGACTA-CTATGCCATCATATCATAATTACGAAAATACCTC-TTCT
6228860 CTTA
123 CTTA
* ** * ** * * * * *
6228864 TAATTATTTTCTAAATAATCTTTCATGTAATTACTAAAATGC-CCTTCCATTGTATGATAAGAAA
1 AAATTATTTAATAAATAACCCCT-ATGAAATTACCAAAATACTCTTTCCATTATA-GATAAGAAA
** * * * * * * * * * * * * *
6228928 TGGACATCTTGCCTAATAGAATATTATGCCTTCATACCATAATTATGGAAATACCCCTTCTTTTA
64 TTTAC--GTGGTCAAATCGACTACTATGCCATCATATCATAATTACGAAAATACCTCTTCTCTTA
* * * * *
6228993 AAATTATTTAATAAATAATCTCTCATGAAATTACCAAAATGCTCTTTTCATTGTATGATAAGAAA
1 AAATTATTTAATAAATAACCCCT-ATGAAATTACCAAAATACTCTTTCCATTATA-GATAAGAAA
* * * *
6229058 TTTACGTGGTCAAATTGACTATTATGCCATCATATCATAATGACAAAAATATCCT-TTCTCTTA
64 TTTACGTGGTCAAATCGACTACTATGCCATCATATCATAATTACGAAAATA-CCTCTTCTCTTA
* ** * * *
6229121 CAATTATTTTTTAAATAACCCCTTATGGAATTACGAAAATA--CTTTCCATTATTTGATAAGAAA
1 AAATTATTTAATAAATAACCCC-TATGAAATTACCAAAATACTCTTTCCATTA-TAGATAAGAAA
* * * *
6229184 TTTACTTTTGGTGAAATCGACTACTATTCCCTCATATCATAATTACGAAAATACCTCTTCTCTTA
64 TTTAC--GTGGTCAAATCGACTACTATGCCATCATATCATAATTACGAAAATACCTCTTCTCTTA
* * * *
6229249 TAATTA-TTACTAAATAACCCCATATTAAACTACCAAAATACTCTTTCCATTATAGA
1 AAATTATTTAATAAATAACCCC-TATGAAATTACCAAAATACTCTTTCCATTATAGA
6229305 GAAAAAGTTT
Statistics
Matches: 458, Mismatches: 92, Indels: 44
0.77 0.15 0.07
Matches are distributed among these distances:
126 22 0.05
127 31 0.07
128 127 0.28
129 118 0.26
130 156 0.34
131 2 0.00
132 2 0.00
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (126 bp):
AAATTATTTAATAAATAACCCCTATGAAATTACCAAAATACTCTTTCCATTATAGATAAGAAATT
TACGTGGTCAAATCGACTACTATGCCATCATATCATAATTACGAAAATACCTCTTCTCTTA
Found at i:6229681 original size:130 final size:130
Alignment explanation
Indices: 6229544--6229841 Score: 320
Period size: 130 Copynumber: 2.3 Consensus size: 130
6229534 CATAATCATG
*
6229544 AAAATACCCTTTCTCTAATAATTATTTACTAAATAATCCC-CAAAGAAATTACCAAAATGCCATT
1 AAAATACCCTTTCTCTAATAATTATTTACTAAATAATCCCTCAAA-AAATTACCAAAAT-ACATT
** * * * ** **
6229608 T-TCATTATATGCTAAGAAATTGACATGTAGCCAAATTTACTATTATGCCT-TCATATTATAATT
64 TGTCATTATATAATAAGAAATAGACATATACCCAAATGGACTATTAT-CCTCTCATACCATAATT
6229671 ACA
128 ACA
* * * * * *
6229674 AAAATA-CCTCTTCTC-ATATAATTATTTTCCAAACAATCCCTTATATAATTACCAAAATACATT
1 AAAATACCCT-TTCTCTA-ATAATTATTTACTAAATAATCCCTCAAAAAATTACCAAAATACATT
* * *
6229737 TGTCATTATATAATAAGAAATAGATATATACCCAAATGGACTATTATTCTCTCGTACCATAATTA
64 TGTCATTATATAATAAGAAATAGACATATACCCAAATGGACTATTATCCTCTCATACCATAATTA
6229802 CA
129 CA
* *
6229804 AAAATACCCTTTCTATTATAATTA-TTACTAAATAATCC
1 AAAATACCCTTTCTCTAATAATTATTTACTAAATAATCC
6229842 TTTATTAAAT
Statistics
Matches: 137, Mismatches: 24, Indels: 15
0.78 0.14 0.09
Matches are distributed among these distances:
129 22 0.16
130 110 0.80
131 5 0.04
ACGTcount: A:0.41, C:0.19, G:0.05, T:0.36
Consensus pattern (130 bp):
AAAATACCCTTTCTCTAATAATTATTTACTAAATAATCCCTCAAAAAATTACCAAAATACATTTG
TCATTATATAATAAGAAATAGACATATACCCAAATGGACTATTATCCTCTCATACCATAATTACA
Found at i:6230317 original size:130 final size:130
Alignment explanation
Indices: 6230129--6230451 Score: 339
Period size: 130 Copynumber: 2.5 Consensus size: 130
6230119 TACCCTTTTC
* * * * * * *
6230129 TTATAACTATTTATTAAATATTATCTTA-AGAAATTACCAAAATGCCATTTCCATTATATGATAA
1 TTATAATTATTTACTAAATAAT-TCTTATTGAAATTATCAAAATACCCTTTCCATTATATGATAA
* * * * ** *
6230193 GAAATTGACATGTGGCCAAATTGATTATTATGTCCC-CATACCATAATGGTGAATATACCCCACC
65 GAAATTGACATGTGACAAAATGGACTATTATG-CCCTCATACCATAATGGCAAAAATACCCCACC
6230257 TT
129 TT
* * *
6230259 TTGTAATTATTTACTTAATAATT-TTATATGAAATTATCAAAATACCCTTTCCAATATATGATAA
1 TTATAATTATTTACTAAATAATTCTTAT-TGAAATTATCAAAATACCCTTTCCATTATATGATAA
* * * * * **
6230323 GAGATTGACATGTGACAAAATGGACTATTATGCCCTCATTCCTTAATTGCAAAAATACCTCTTCT
65 GAAATTGACATGTGACAAAATGGACTATTATGCCCTCATACCATAATGGCAAAAATACCCCACCT
6230388 T
130 T
* * *
6230389 TTATAATTATTTACTAAATAATTCCTTGTT-AAATTATCCAAATACCCTTTTCATTATATGATA
1 TTATAATTATTTACTAAATAATT-CTTATTGAAATTATCAAAATACCCTTTCCATTATATGATA
6230452 TATATTAAAG
Statistics
Matches: 158, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
128 3 0.02
129 4 0.03
130 147 0.93
131 1 0.01
132 3 0.02
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (130 bp):
TTATAATTATTTACTAAATAATTCTTATTGAAATTATCAAAATACCCTTTCCATTATATGATAAG
AAATTGACATGTGACAAAATGGACTATTATGCCCTCATACCATAATGGCAAAAATACCCCACCTT
Found at i:6230682 original size:129 final size:127
Alignment explanation
Indices: 6230542--6231143 Score: 444
Period size: 129 Copynumber: 4.7 Consensus size: 127
6230532 CTATTTCGTT
* * * *
6230542 CTTATATCATAATTACAAAAGTAAACCTTTTCTTATAATTATTTATTAAAATTCCATTAAAAAAT
1 CTTATACCATAATTACAAAA-T-ACCCTTTTCTTATAATTATTTACTAAAATTCCCTTAAAAAAT
* * * *
6230607 TACCATAATACCCTTTTCAATATATGATAAGAAATTTACATGCAGCCAAATGGACTATTATGCC
64 TACCAAAATACCCTTTCCATTATATGATAAGAAATTTACATGTAGCCAAATGGACTATTATGCC
* **
6230671 CTTATACCATAATTACTAAAATACCCTTCTT-TTATAATTATTTAC-AAAATAATCCCTCAAGTA
1 CTTATACCATAATTAC-AAAATACCCTT-TTCTTATAATTATTTACTAAAAT--TCCCTTAAAAA
* * * * * * *
6230734 ATTA-CTAAACACCC-TTCCATTATATGATAAGAAATTGACATGTTAGGCTAATAGAATATTATG
62 ATTACCAAAATACCCTTTCCATTATATGATAAGAAATTTACATG-TAGCCAAATGGACTATTATG
6230797 CC
126 CC
* * * * * * *
6230799 CTTGTATCAT-ATGTATGCAATAT-CCCTTCTCCTATAATTATTTACTAAATAATCCCCTAAAAA
1 CTTATACCATAAT-TA--CAAAATACCCTTTTCTTATAATTATTTACTAAA-ATTCCCTTAAAAA
* * * *
6230862 ATGACCAAAATATCCTTTCCATTATATGATAAGAAATTGCT-CTATG--GTCAAATCGACTATTA
62 ATTACCAAAATACCCTTTCCATTATATGATAAGAAATT--TAC-ATGTAGCCAAATGGACTATTA
*
6230924 T-TC
124 TGCC
* * **
6230927 CTTCAAACCATAATTAGAAAAATACCCATTTTCTTATAATTA-TTACTAAGTAA-T-CCTATATT
1 CTT-ATACCATAATTA-CAAAATACCC-TTTTCTTATAATTATTTACTAA--AATTCCCT-TAAA
* * * *
6230989 AAATTGCCAAAATA-CCTTTCCCATTATATGATAAGAAGTTTACATGTGGCCAAATGGACTATGA
60 AAATTACCAAAATACCCTTT-CCATTATATGATAAGAAATTTACATGTAGCCAAATGGACTATTA
**
6231053 TGTT
124 TGCC
* * * * * *
6231057 GTTATACCATAATTACGAAAATACCCATTCTCTGATAATT-TTATACTAAATAATCTCTTATAAA
1 CTTATACCATAATTAC-AAAATACCC-TTTTCTTATAATTATT-TACTAAA-ATTCCCTTAAAAA
*
6231121 ATTA-TAAAATACCCTTTCCATTA
62 ATTACCAAAATACCCTTTCCATTA
6231144 CATCATATAC
Statistics
Matches: 374, Mismatches: 64, Indels: 70
0.74 0.13 0.14
Matches are distributed among these distances:
127 37 0.10
128 98 0.26
129 166 0.44
130 66 0.18
131 4 0.01
132 3 0.01
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.36
Consensus pattern (127 bp):
CTTATACCATAATTACAAAATACCCTTTTCTTATAATTATTTACTAAAATTCCCTTAAAAAATTA
CCAAAATACCCTTTCCATTATATGATAAGAAATTTACATGTAGCCAAATGGACTATTATGCC
Found at i:6230796 original size:128 final size:129
Alignment explanation
Indices: 6230627--6230900 Score: 306
Period size: 128 Copynumber: 2.1 Consensus size: 129
6230617 CCCTTTTCAA
* * *
6230627 TATATGATAAGAAATTTACATGCAGCCAAATGGACTATTATGCCCTTATACCATAAT-TACTAAA
1 TATATGATAAGAAATTGACATGCAGCCAAATAGAATATTATGCCCTTATACCAT-ATGTA-TAAA
** ** * *
6230691 ATA-CCCTTCTTTTATAATTATTTACAAAATAAT-CCCTCAAGTAATTA-CTAAACA-CCCTTCC
64 ATATCCCTTCTCCTATAATTATTTACAAAATAATCCCCT-AAAAAATGACCAAAACATCCCTTCC
6230752 AT
128 AT
* * * * * **
6230754 TATATGATAAGAAATTGACATGTTAGGCTAATAGAATATTATGCCCTTGTATCATATGTATGCAA
1 TATATGATAAGAAATTGACATG-CAGCCAAATAGAATATTATGCCCTTATACCATATGTATAAAA
* * *
6230819 TATCCCTTCTCCTATAATTATTTACTAAATAATCCCCTAAAAAATGACCAAAATATCCTTTCCAT
65 TATCCCTTCTCCTATAATTATTTACAAAATAATCCCCTAAAAAATGACCAAAACATCCCTTCCAT
6230884 TATATGATAAGAAATTG
1 TATATGATAAGAAATTG
6230901 CTCTATGGTC
Statistics
Matches: 122, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
127 28 0.23
128 60 0.49
129 9 0.07
130 25 0.20
ACGTcount: A:0.38, C:0.19, G:0.08, T:0.35
Consensus pattern (129 bp):
TATATGATAAGAAATTGACATGCAGCCAAATAGAATATTATGCCCTTATACCATATGTATAAAAT
ATCCCTTCTCCTATAATTATTTACAAAATAATCCCCTAAAAAATGACCAAAACATCCCTTCCAT
Found at i:6231208 original size:72 final size:75
Alignment explanation
Indices: 6231117--6231263 Score: 237
Period size: 75 Copynumber: 2.0 Consensus size: 75
6231107 TAATCTCTTA
*
6231117 TAAAATTATAAAATACCCTTTCCATTACA-T-CAT-ATACATAAAAAAAAATCCTTTACAAAACT
1 TAAAATTATAAAATACCCTTTCCATTACATTACATCATACACAAAAAAAAATCCTTTACAAAACT
6231179 ACAAAACTGC
66 ACAAAACTGC
* * *
6231189 TAAAATTATAAAATACCCTTTCCATTACATTACATCATATACATAAAAAAATCCTTTACGAAACT
1 TAAAATTATAAAATACCCTTTCCATTACATTACATCATACACAAAAAAAAATCCTTTACAAAACT
6231254 ACAAAACTGC
66 ACAAAACTGC
6231264 CCTCACATTA
Statistics
Matches: 68, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
72 29 0.43
73 1 0.01
74 3 0.04
75 35 0.51
ACGTcount: A:0.48, C:0.21, G:0.02, T:0.29
Consensus pattern (75 bp):
TAAAATTATAAAATACCCTTTCCATTACATTACATCATACACAAAAAAAAATCCTTTACAAAACT
ACAAAACTGC
Found at i:6232005 original size:132 final size:127
Alignment explanation
Indices: 6231791--6232128 Score: 290
Period size: 132 Copynumber: 2.6 Consensus size: 127
6231781 TATCATATGA
* * * * *
6231791 CCAAATGGACTATTATTCTCATATGATAATTATGAAATTACCCTTTTCTTATAATTATTTACTAA
1 CCAAATGGACTATTATCCTCATATCATAATTACGAAATAACCCTCTTCTTATAATTATTTACTAA
* * * *
6231856 ATAATTTCTTAAGAAATTAACAAAATGACC-TTT-CAATTATATAATAAGAAATTGACATGTGG
66 ATAATTCCCTAAGAAATTAAC-AAATGACCATTTCCAA-TATATAATAAAAAATTGACAAGTGG
* *
6231918 CCAAATTGACTATTATGCCTTCATATCATAATTACGAATATAACCCATCTT-TTATAATATTTTT
1 CCAAATGGACTATTAT-CC-TCATATCATAATTACGAA-ATAACCC-TCTTCTTAT-A-ATTATT
* * * *
6231982 TACTAAATAATTCCCTATGAAATTATCAAATTACCATTTCCAATATATAATAAAAAATTTACAAG
60 TACTAAATAATTCCCTAAGAAATTAACAAATGACCATTTCCAATATATAATAAAAAATTGACAAG
6232047 TGG
125 TGG
** * * * * * * * *
6232050 GGAAAAGTACTATTATATCCTTATA-CTTTAATTATGAAA-ATTCTCCTTTTTTTATAATTATTT
1 CCAAATGGACTA-T-TATCCTCATATC-ATAATTACGAAATA-AC-CCTCTTCTTATAATTATTT
*
6232113 ACTAAATAATCCCCTA
61 ACTAAATAATTCCCTA
6232129 TGAAGTTACT
Statistics
Matches: 170, Mismatches: 27, Indels: 25
0.77 0.12 0.11
Matches are distributed among these distances:
127 15 0.09
128 1 0.01
129 16 0.09
130 32 0.19
131 18 0.11
132 79 0.46
133 6 0.04
134 3 0.02
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.40
Consensus pattern (127 bp):
CCAAATGGACTATTATCCTCATATCATAATTACGAAATAACCCTCTTCTTATAATTATTTACTAA
ATAATTCCCTAAGAAATTAACAAATGACCATTTCCAATATATAATAAAAAATTGACAAGTGG
Found at i:6232577 original size:128 final size:128
Alignment explanation
Indices: 6232260--6232800 Score: 395
Period size: 128 Copynumber: 4.2 Consensus size: 128
6232250 GCTCTTGTAT
** * * * * *
6232260 CATAATTACAAAAATACCCCTTCTC-TTATAGGTATTTACTAAAGAATCTCT-TAAGAAATTACC
1 CATAATTATGAAAATACCCATTCTCTTTCTA-TTATTTACTAAATAATCCCTAT-A-AAATTACC
* * * * * * * * * *
6232323 AAAAAACCCTTTCCAATATATGATAAGAAGTTGACATGTCA-CCAAATGGACTATCAAGCCCTTA
63 AAAACACCC-TTCCATTATATGATAAGAAATTAACAAGT-AGACAAATGAACTATGATGCCCTCA
6232387 TAC
126 TAC
* * ** *
6232390 CATAATTATGAAAATACCCATTCTCTTACAATTATTTACTAAAT-ATCCCTCATGTAATTACTAA
1 CATAATTATGAAAATACCCATTCTCTTTCTATTATTTACTAAATAATCCCT-ATAAAATTACCAA
* * * * * *
6232454 AACACCCTTCCATTATATGA-AGGAAATTGATAAGTTAGACTATTGCAA-TATTATGCCCTCATA
65 AACACCCTTCCATTATATGATAAGAAATTAACAAG-TAGACAAATG-AACTATGATGCCCTCATA
6232517 C
128 C
* *
6232518 CATAATTATGAAAATA-CCTTTCTCTTTCTATTATTTACTAAATAATCCACTAAAAAATTACCAA
1 CATAATTATGAAAATACCCATTCTCTTTCTATTATTTACTAAATAATCC-CTATAAAATTACCAA
* * * * * *
6232582 AATA-CCTTGTCATTATATGATAAGAAATTAACATGTGGTCAAATGAACTATGATTCCCTCATAC
65 AACACCCTT-CCATTATATGATAAGAAATTAACAAGTAGACAAATGAACTATGATGCCCTCATAC
* * * *
6232646 CATAATTAGGAAAATACCCCTTCT-TTTATAGTTA-TTACTAAATAATCCCATATTAAATTACCA
1 CATAATTATGAAAATACCCATTCTCTTTCTA-TTATTTACTAAATAATCCC-TATAAAATTACCA
* * * * * * * * *
6232709 AAAGACCTTTTCCATTATATGGTAA-AAAGTTTACATA-TGGCCAAATGGACTATTATGCCTTCA
64 AAACACC-CTTCCATTATATGATAAGAAA-TTAACA-AGTAGACAAATGAACTATGATGCCCTCA
6232772 TAC
126 TAC
* **
6232775 TATAATTATGAAAATACATATTCTCT
1 CATAATTATGAAAATACCCATTCTCT
6232801 AATAATTACA
Statistics
Matches: 327, Mismatches: 65, Indels: 38
0.76 0.15 0.09
Matches are distributed among these distances:
127 42 0.13
128 144 0.44
129 102 0.31
130 36 0.11
131 3 0.01
ACGTcount: A:0.39, C:0.19, G:0.08, T:0.34
Consensus pattern (128 bp):
CATAATTATGAAAATACCCATTCTCTTTCTATTATTTACTAAATAATCCCTATAAAATTACCAAA
ACACCCTTCCATTATATGATAAGAAATTAACAAGTAGACAAATGAACTATGATGCCCTCATAC
Found at i:6233938 original size:129 final size:128
Alignment explanation
Indices: 6233550--6233945 Score: 419
Period size: 129 Copynumber: 3.1 Consensus size: 128
6233540 AATCCCTTGT
* * * * * * *
6233550 GAAATTACGAAACTG-CCTATTCCATTATTTGCTAAGAAATTGACATATGACCTAATGGACTATT
1 GAAATTACCAAAATGACCT-TTCCAATATATGATAAGAAATTGACATGTGGCC-AATGGACTATT
* *
6233614 AT-T-CTCATACT-TAATTATGAAATTACCATTCTCTTATAATTATTTACTAAATAATCTATTAA
64 ATGTCCTCATACTATAATTATGAAAATACCATTCTCTTATAATTATTTACTAAATAATCTCTTAA
* * * *
6233676 GAAATTACCAAAATGACCTTTCCACTATATGATAAAAAATTGTCATGTGGCTAAATGGACTATTA
1 GAAATTACCAAAATGACCTTTCCAATATATGATAAGAAATTGACATGTGGC-CAATGGACTATTA
* * * * ** * *
6233741 TGCCCTTATACCATAATTA-CAGTATACCCCA-TCTTTTATAATTATTTACTAAATAATTTCTTA
65 TGTCCTCATACTATAATTATGAAAATA--CCATTCTCTTATAATTATTTACTAAATAATCTCTTA
*
6233804 T
128 A
* *
6233805 GAAATTACCAAAAT-ACCTTTTCTAATATATGATAAGAAATTGACATGTGGCCAATGTACTATTA
1 GAAATTACCAAAATGACC-TTTCCAATATATGATAAGAAATTGACATGTGGCCAATGGACTATTA
* * * *
6233869 TGTCCTCATACTATAATTATGAAAATACACATTCTCTTATAATTATTTACTAAGTAGTCCCTTAC
65 TGTCCTCATACTATAATTATGAAAATAC-CATTCTCTTATAATTATTTACTAAATAATCTCTTAA
*
6233934 GAAATTGCCAAA
1 GAAATTACCAAA
6233946 CTTTCCATTA
Statistics
Matches: 219, Mismatches: 40, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
126 51 0.23
127 4 0.02
128 41 0.19
129 120 0.55
130 3 0.01
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (128 bp):
GAAATTACCAAAATGACCTTTCCAATATATGATAAGAAATTGACATGTGGCCAATGGACTATTAT
GTCCTCATACTATAATTATGAAAATACCATTCTCTTATAATTATTTACTAAATAATCTCTTAA
Found at i:6234565 original size:129 final size:130
Alignment explanation
Indices: 6233985--6234621 Score: 601
Period size: 130 Copynumber: 4.9 Consensus size: 130
6233975 ATCACTTACA
* * * * * *
6233985 AAATTA-CAAAACTACCTATTCCGTTATTTGATAAGAAAGTG--ATGT-GTCTAAATGTACTATT
1 AAATTACCAAAA-TACCTTTTCCATTATATGATAAGAAATTGACATGTGGT-GAAATGGACTATT
* * **
6234046 ACGCCTTTATATTATAATTACAAAAATATCCC-TTCTCTTATAATTATTTACTAAATAATCTCC-
64 ATGCCTTCATACCATAATTACAAAAATA-CCCATTCTCTTATAATTATTTACTAAATAATC-CCA
6234109 TAAG
127 TAAG
* * * *
6234113 AAATTACCAAAATACCTTTTCCAATATATGATAACAAATTCACATGTGGTCAAATGGACTATTAT
1 AAATTACCAAAATACCTTTTCCATTATATGATAAGAAATTGACATGTGGTGAAATGGACTATTAT
* * * * * * * * *
6234178 GCCATCATAGCATAATTTCACAAACACCCCTTCTATTGTAATTATTTACTAAATAATCCCTTAAG
66 GCCTTCATACCATAATTACAAAAATACCCATTCTCTTATAATTATTTACTAAATAATCCCATAAG
* * * * * * * *** * *
6234243 TAATTACTAAAATGCC-ATTCCATTATGTGATAAAAAAATTGACATCTTAAGCCAATGGAATATT
1 AAATTACCAAAATACCTTTTCCATTATATGAT-AAGAAATTGACATGTGGTG-AAATGGACTATT
** * *
6234307 ATGCCTTCATACCATAATTATGAAAATACCCATTCCCTTATAATTATTTACTAAATAAT-CTACT
64 ATGCCTTCATACCATAATTACAAAAATACCCATTCTCTTATAATTATTTACTAAATAATCCCA-T
6234371 AAG
128 AAG
* * * *
6234374 AAATTGCCAAAATACCTTTTCCCTTATATGATAAGAAATTGACATGTGGTTAAATGGGCTATTAT
1 AAATTACCAAAATACCTTTTCCATTATATGATAAGAAATTGACATGTGGTGAAATGGACTATTAT
** ** * **
6234439 TTCTTCATACCATAATTAGGAAAATACCCATTCTCTTATAATTA-TTGCTAAATAATCCCATATT
66 GCCTTCATACCATAATTACAAAAATACCCATTCTCTTATAATTATTTACTAAATAATCCCATAAG
* * * *
6234503 AAATTACCAAAATA-CTCTTTGCATTATATGATAAGAAGTTTATATGTGGTGAAATGGACTATTA
1 AAATTACCAAAATACCT-TTTCCATTATATGATAAGAAATTGACATGTGGTGAAATGGACTATTA
* * * * *
6234567 TGCCCTCATACTATAATTACAAAAATACCCATTCTCTGATAACTATATACTAAAT
65 TGCCTTCATACCATAATTACAAAAATACCCATTCTCTTATAATTATTTACTAAAT
6234622 TGTTAGCTTT
Statistics
Matches: 407, Mismatches: 89, Indels: 24
0.78 0.17 0.05
Matches are distributed among these distances:
128 30 0.07
129 125 0.31
130 151 0.37
131 89 0.22
132 12 0.03
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.35
Consensus pattern (130 bp):
AAATTACCAAAATACCTTTTCCATTATATGATAAGAAATTGACATGTGGTGAAATGGACTATTAT
GCCTTCATACCATAATTACAAAAATACCCATTCTCTTATAATTATTTACTAAATAATCCCATAAG
Found at i:6237026 original size:53 final size:51
Alignment explanation
Indices: 6236968--6237087 Score: 168
Period size: 53 Copynumber: 2.3 Consensus size: 51
6236958 CTTTATACCA
*
6236968 AAATTATGAAAATACCCTTCTATTAAAATTATTTACTAAATATCTCTCTTATG
1 AAATTATGAAAATACCCTTCTATTAAAATTATTTACTAAAAATCT-T-TTATG
* * *
6237021 AAATTATGAAAATACCCTTCTCTTACAATTGTTTACTAAAAATCTTTTATG
1 AAATTATGAAAATACCCTTCTATTAAAATTATTTACTAAAAATCTTTTATG
**
6237072 AAATTACCAAAATACC
1 AAATTATGAAAATACC
6237088 TTTTTCATTA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
51 19 0.31
52 1 0.02
53 41 0.67
ACGTcount: A:0.41, C:0.17, G:0.04, T:0.38
Consensus pattern (51 bp):
AAATTATGAAAATACCCTTCTATTAAAATTATTTACTAAAAATCTTTTATG
Found at i:6237050 original size:25 final size:25
Alignment explanation
Indices: 6236967--6237050 Score: 73
Period size: 25 Copynumber: 3.2 Consensus size: 25
6236957 CCTTTATACC
*
6236967 AAAATTATGAAAATACCCTTCTATT
1 AAAATTATGAAAATACCCTTCTCTT
* *
6236992 AAAATTATTTACTAAATA-TC-TCTCTT
1 AAAATTA-TGA--AAATACCCTTCTCTT
6237018 ATGAAATTATGAAAATACCCTTCTCTT
1 A--AAATTATGAAAATACCCTTCTCTT
*
6237045 ACAATT
1 AAAATT
6237051 GTTTACTAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
25 16 0.35
26 9 0.20
27 10 0.22
28 11 0.24
ACGTcount: A:0.40, C:0.17, G:0.04, T:0.39
Consensus pattern (25 bp):
AAAATTATGAAAATACCCTTCTCTT
Found at i:6237608 original size:129 final size:128
Alignment explanation
Indices: 6237393--6238187 Score: 494
Period size: 128 Copynumber: 6.3 Consensus size: 128
6237383 AATTGCACTC
* * * *
6237393 TCATACCATAATTACAAAAATAACCCTTCTATTATAGTTATTTACTAAATAATATCCT-ATGAAA
1 TCATACCATAATTAC-AAAATAACCCTTCTCTTATAATTATTTACTAAA-CA-ATCCTCAAGAAA
** *
6237457 TTAAGAAAATA-CACTTTCCATTATATGATAAAAAATTGACATGTGGTCAAATGGAA-TATTATG
63 TTACTAAAATACCA-TTTCCATTATATGATAAGAAATTGACATGTGGTCAAAT-GAACTATTATG
6237520 CCA
126 CCA
* *
6237523 TCATACCATAATTACAGAATAACCCATCTCTTATAATTATTTACTAAACAATCCGTCAAGAAATT
1 TCATACCATAATTACAAAATAACCCTTCTCTTATAATTATTTACTAAACAATCC-TCAAGAAATT
* * * * * * *
6237588 ACTAAAGTGCCATTTCCATTA-ACTGGTAAGAAATTGACTTGTCG-CAAATTAACTATTATGTCA
65 ACTAAAATACCATTTCCATTATA-TGATAAGAAATTGACATGTGGTCAAATGAACTATTATGCCA
** * *** * * * *
6237651 TCATATTATAATTACAAAA-ATACCCTTTCTCTTATAATTATTTGCTACTTAATCATTTATGAGA
1 TCATACCATAATTACAAAATA-ACCC-TTCTCTTATAATTATTTACTAAACAATC-CTCAAGAAA
* * * * * *
6237715 TTACTAAAATATCATTTTCATTATATGATAAGAAATTGACGTGTGGCCAAATAAACTATTATTCC
63 TTACTAAAATACCATTTCCATTATATGATAAGAAATTGACATGTGGTCAAATGAACTATTATGCC
*
6237780 C
128 A
** * * * * * * *
6237781 TGGTACAAGAATTACAAAACACCCCTTCTCTCATAATTA-TTACTAAATAATCTCTTATA-AAAT
1 TCATACCATAATTACAAAATAACCCTTCTCTTATAATTATTTACTAAACAATC-CTCA-AGAAAT
* * * * * *
6237844 TACCAAAATACCTTTTTC-TATATATGATAAGAAATTAACATGTGGTCGAA-G-ACTCTTATGCC
64 TACTAAAATACCATTTCCAT-TATATGATAAGAAATTGACATGTGGTCAAATGAACTATTATGCC
6237906 A
128 A
* * * * *
6237907 TAATACCATAATTACGAAAATAATCTTTCT-TGTATAATTATTTACTAAACATTCTATCAAGAAA
1 TCATACCATAATTAC-AAAATAACCCTTCTCT-TATAATTATTTACTAAACAATC-CTCAAGAAA
** * ** * *** * *
6237971 TTACTAAAATACTTTTTCCATTAAATGGCAAGAAACAT-ACATGTAACCAAA-CAGACTATTATT
63 TTACTAAAATACCATTTCCATTATATGATAAGAAA-TTGACATGTGGTCAAATGA-ACTATTATG
*
6238034 CCC
126 CCA
* * **
6238037 TCATATCATAATTAC--GA-AA--------TTAT--TTATTTACTAATTAAT-CTCTAATGAAAT
1 TCATACCATAATTACAAAATAACCCTTCTCTTATAATTATTTACTAAACAATCCTC-AA-GAAAT
* * * * * * *
6238088 TACCAAAATACCCTTTCCATTATATGATAAAAAATTAACATGTGGCCAAATGAACTATTATTCCC
64 TACTAAAATACCATTTCCATTATATGATAAGAAATTGACATGTGGTCAAATGAACTATTATGCCA
* * * *
6238153 TTATACCATAATTGCAAAATACCCCTTCTATTATA
1 TCATACCATAATTACAAAATAACCCTTCTCTTATA
6238188 CTAAATAATC
Statistics
Matches: 513, Mismatches: 115, Indels: 76
0.73 0.16 0.11
Matches are distributed among these distances:
114 2 0.00
115 3 0.01
116 80 0.16
117 1 0.00
118 4 0.01
119 2 0.00
126 23 0.04
127 31 0.06
128 147 0.29
129 147 0.29
130 72 0.14
131 1 0.00
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (128 bp):
TCATACCATAATTACAAAATAACCCTTCTCTTATAATTATTTACTAAACAATCCTCAAGAAATTA
CTAAAATACCATTTCCATTATATGATAAGAAATTGACATGTGGTCAAATGAACTATTATGCCA
Found at i:6238148 original size:116 final size:118
Alignment explanation
Indices: 6238025--6238269 Score: 280
Period size: 121 Copynumber: 2.1 Consensus size: 118
6238015 AACCAAACAG
* * * *
6238025 ACTATTATTCCCTCATATCATAATTACGAAATTA-TT-TATT-TACTAATTAATCTCTAATGAAA
1 ACTATTATTCCCTCATACCATAATTAC-AAAATACTTCTATTATACTAAATAATCCCTAATGAAA
* *
6238087 TTACCAAAATACCCTTTCCATTATATGATAAAAAATTAACATGTGGCCAAATGA
65 CTACCAAAAGACCCTTTCCATTATATGATAAAAAATTAACATGTGGCCAAATGA
* * * *
6238141 ACTATTATTCCCTTATACCATAATTGCAAAATACCCCTTCTATTATACTAAATAATCCCTTATTA
1 ACTATTATTCCCTCATACCATAATTACAAAATA---CTTCTATTATACTAAATAATCCCTAATGA
* * * * * *
6238206 AACTATCAAAAGACTCTTTCCATTATATGATAAGAAGTTTACATGTGGCCAAATGG
63 AACTACCAAAAGACCCTTTCCATTATATGATAAAAAATTAACATGTGGCCAAATGA
*
6238262 GCTATTAT
1 ACTATTAT
6238270 GCTATCATAA
Statistics
Matches: 106, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
115 5 0.05
116 24 0.23
119 2 0.02
120 4 0.04
121 71 0.67
ACGTcount: A:0.38, C:0.19, G:0.07, T:0.36
Consensus pattern (118 bp):
ACTATTATTCCCTCATACCATAATTACAAAATACTTCTATTATACTAAATAATCCCTAATGAAAC
TACCAAAAGACCCTTTCCATTATATGATAAAAAATTAACATGTGGCCAAATGA
Found at i:6238797 original size:129 final size:128
Alignment explanation
Indices: 6238590--6239051 Score: 493
Period size: 129 Copynumber: 3.6 Consensus size: 128
6238580 ACTTTTTAAC
* * *
6238590 AATTATTTATTAAATAATTCCCTATTAAATTACCAAAATACCCTTTCTCA-TATATGATAAGAAA
1 AATTATTTACTAAATAATTCCCTATGAAATTAGCAAAATACCCTTTC-CATTATATGATAAGAAA
* * *
6238654 TTGATATGTAACCAAATGGACTATTATACCTTTATACCATAATTACAAAAATATCCTTTTCTTAT
65 TTGACATGTGACCAAATGGACTATTAT-CCTTTATAACATAATTACAAAAATATCCTTTTCTTAT
*
6238719 AATTATTTACTAAATAA-TCGCCTATGAAATTAGCAAAATACCCTTTGCATTATATGATAAGAAA
1 AATTATTTACTAAATAATTC-CCTATGAAATTAGCAAAATACCCTTTCCATTATATGATAAGAAA
* * * * * *
6238783 TTGACATGTGACCAAATGGATTGTTATGCTTTTATAACAAAATTACAAAAAT-TCCATTCTCTTG
65 TTGACATGTGACCAAATGGACTATTAT-CCTTTATAACATAATTACAAAAATATCC-TTTTCTTA
6238847 T
128 T
* * * * *
6238848 AATTATTTAATAAATAATTCCATATGAAATTATCAAAATACCCTTTCCATTATATAACAAGAAAT
1 AATTATTTACTAAATAATTCCCTATGAAATTAGCAAAATACCCTTTCCATTATATGATAAGAAAT
* * ** * * * * * * * * * *
6238913 TTACATAT-AGGTAAATTGAGTACTATGCTCTCATATCATAATTACGAAAATAACATTTCCCTTA
66 TGACATGTGA-CCAAATGGACTATTATCCT-TTATAACATAATTACAAAAATATCCTTT-TCTTA
6238977 T
128 T
* * *
6238978 AATTATTTACTAAATAATCCCCTATGAAAGTAAG-AAAATACCTTTTCCATTATATGATAAGAAA
1 AATTATTTACTAAATAATTCCCTATGAAA-TTAGCAAAATACCCTTTCCATTATATGATAAGAAA
6239042 TTGACATGTG
65 TTGACATGTG
6239052 GTTAAAGACT
Statistics
Matches: 274, Mismatches: 49, Indels: 18
0.80 0.14 0.05
Matches are distributed among these distances:
128 9 0.03
129 196 0.72
130 67 0.24
131 2 0.01
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.36
Consensus pattern (128 bp):
AATTATTTACTAAATAATTCCCTATGAAATTAGCAAAATACCCTTTCCATTATATGATAAGAAAT
TGACATGTGACCAAATGGACTATTATCCTTTATAACATAATTACAAAAATATCCTTTTCTTAT
Found at i:6239130 original size:41 final size:41
Alignment explanation
Indices: 6239080--6239166 Score: 158
Period size: 41 Copynumber: 2.1 Consensus size: 41
6239070 ATAATACTAT
6239080 AATTCTGAAAATAATCTTTCTTGTATAATTATTTACTAAAC
1 AATTCTGAAAATAATCTTTCTTGTATAATTATTTACTAAAC
*
6239121 AATTTTGAAAATAATCTTTCTTGTATAATTATTTACTAAAC
1 AATTCTGAAAATAATCTTTCTTGTATAATTATTTACTAAAC
6239162 -ATTCT
1 AATTCT
6239167 CTCATGAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
40 4 0.09
41 40 0.91
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46
Consensus pattern (41 bp):
AATTCTGAAAATAATCTTTCTTGTATAATTATTTACTAAAC
Found at i:6239318 original size:115 final size:113
Alignment explanation
Indices: 6239144--6239497 Score: 320
Period size: 115 Copynumber: 3.0 Consensus size: 113
6239134 ATCTTTCTTG
* * * * * * *
6239144 TATAATTATTTACTAAACATTCTCTCATGAAATTACTAAAATGCATTTTCTATTA-ATGATAAGA
1 TATAATTATTT-CTAAATAATCCCTTATGAAATTACCAAAA-CCA-TTTCCATTATATGATAAGA
* * * *
6239208 AGCTTACTTGTAACCAAATTG-ATTATTATGCCCTCATATCATAATTACAAAA
63 AGATTACATGTAGCCAAA-TGAACTATTATGCCCTCATA-CATAATTACAAAA
* * *
6239260 T-TACTTATTTACTAATTAATCCCTTATGAAATTACCAAAACACATTTCCATTATATGATAACAA
1 TATAATTATTT-CTAAATAATCCCTTATGAAATTACCAAAAC-CATTTCCATTATATGATAAGAA
* * * *
6239324 -ATTGACATATAGCTAAATGAACTATTATTCCCTCACACCATAATTACAAATA
64 GATT-ACATGTAGCCAAATGAACTATTATGCCCTCATA-CATAATTACAAA-A
*
6239376 CCCCTTATAATTATTTCTAAATAATCCCTTATTAAATTACCATAAGACCATTTCCATTATATGAT
1 -----TATAATTATTTCTAAATAATCCCTTATGAAATTACCA-AA-ACCATTTCCATTATATGAT
* * *
6239441 AAGAAGTTTACATGTGGCCAAATGAACTATTATGCCTTCATACAATAATTACAAAA
59 AAGAAGATTACATGTAGCCAAATGAACTATTATGCCCTCATAC-ATAATTACAAAA
6239497 T
1 T
6239498 CCCTATTCTC
Statistics
Matches: 193, Mismatches: 30, Indels: 30
0.76 0.12 0.12
Matches are distributed among these distances:
114 12 0.06
115 78 0.40
116 3 0.02
121 27 0.14
122 69 0.36
123 4 0.02
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.36
Consensus pattern (113 bp):
TATAATTATTTCTAAATAATCCCTTATGAAATTACCAAAACCATTTCCATTATATGATAAGAAGA
TTACATGTAGCCAAATGAACTATTATGCCCTCATACATAATTACAAAA
Found at i:6239441 original size:122 final size:122
Alignment explanation
Indices: 6239264--6239495 Score: 324
Period size: 122 Copynumber: 1.9 Consensus size: 122
6239254 ACAAAATTAC
*
6239264 TTATTTACTAATTAATCCCTTATGAAATTACCAAAACACATTTCCATTATATGATAACAAATTGA
1 TTATTTACTAAATAATCCCTTATGAAATTACCAAAACACATTTCCATTATATGATAACAAATTGA
* * *
6239329 CATATAGCTAAATGAACTATTATTCCCTCACACCATAATTACAAATACCCCTTATAA
66 CATATAGCCAAATGAACTATTATGCCCTCACACAATAATTACAAATACCCCTTATAA
* * *
6239386 TTATTT-CTAAATAATCCCTTATTAAATTACCATAAGAC-CATTTCCATTATATGATAAGAAGTT
1 TTATTTACTAAATAATCCCTTATGAAATTACCA-AA-ACACATTTCCATTATATGATAACAAATT
* * * * *
6239449 TACATGTGGCCAAATGAACTATTATGCCTTCATACAATAATTACAAA
64 GACATATAGCCAAATGAACTATTATGCCCTCACACAATAATTACAAA
6239496 ATCCCTATTC
Statistics
Matches: 96, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
121 24 0.25
122 70 0.73
123 2 0.02
ACGTcount: A:0.40, C:0.19, G:0.06, T:0.34
Consensus pattern (122 bp):
TTATTTACTAAATAATCCCTTATGAAATTACCAAAACACATTTCCATTATATGATAACAAATTGA
CATATAGCCAAATGAACTATTATGCCCTCACACAATAATTACAAATACCCCTTATAA
Found at i:6240118 original size:129 final size:129
Alignment explanation
Indices: 6239640--6240359 Score: 468
Period size: 129 Copynumber: 5.6 Consensus size: 129
6239630 TGACAAATGT
* * * ** * *
6239640 CCAAATGTACTATTATGCCCTAATATCATAATTCTGAAAATAACTATTAC-CTT-TAATTATTTA
1 CCAAATGGACTATTATGCCATCATGCCATAATTATGAAAAT-ACCATT-CTCTTATAATTATTTA
* * * * * * * *
6239703 CTAAATAATCCCTTAAGAAATTACCAAAATGA-CATTTCCATTGTATGATATGAAATTCGGA-A-
64 CTAAATAATCTCTTATGAAATTACAAAAAT-ACCCTTTTCATTATAAGATAAGAAATT--GACAT
6239765 GTTA-
126 G-TAG
* * ** * * * * * * *
6239769 CTAATTGGACTATTATGCTTTTA-GATCATAATT-TCAATATTACCCTTCTTTTAAAATTATTTA
1 CCAAATGGACTATTATGCCATCATG-CCATAATTATGAA-AATACCATTCTCTTATAATTATTTA
* * * * *
6239832 CTAAATAATCTCTTATGAAATTACTAAAATACCCTTTTTATTATATGGTACGAAATTGACATGTA
64 CTAAATAATCTCTTATGAAATTACAAAAATACCCTTTTCATTATAAGATAAGAAATTGACATGTA
6239897 G
129 G
* ** * * * * * *
6239898 CCAAATGTACTATTATTTTC-TCATAG-CGTGATTATGAAAATACCCTTTTGC-AATAATTATCT
1 CCAAATGGACTATTA-TGCCATCAT-GCCATAATTATGAAAATACCATTCT-CTTATAATTATTT
* * * * **
6239960 ATTAAAAAAT-TCCTTATGAAATTTTC-AAAATGCCCTTTTTGTTATAAGATAAGAAATTGACAT
63 ACTAAATAATCT-CTTATGAAA-TTACAAAAATACCCTTTTCATTATAAGATAAGAAATTGACAT
6240023 GTAG
126 GTAG
**
6240027 CCAAATGGACTATTATGCCATCATGCCATAATTATGAAAATACCATTACTCTTATAATTGGTTAC
1 CCAAATGGACTATTATGCCATCATGCCATAATTATGAAAATACCATT-CTCTTATAATTATTTAC
* * * * *
6240092 TAAATAATCTCTTA-GCAAATTACAAAAAT-GCCTTTTCATTATATGATAAAAAATTGGCATGTG
65 TAAATAATCTCTTATG-AAATTACAAAAATACCCTTTTCATTATAAGATAAGAAATTGACATGTA
6240155 G
129 G
** * * * * * * * *
6240156 CCAAATCAACAATTACGCCATCATACCATAATTACGACAATACCCCTTCTATTATAATCATTTAC
1 CCAAATGGACTATTATGCCATCATGCCATAATTATGAAAATA-CCATTCTCTTATAATTATTTAC
* * * * * *
6240221 TAAATAATCCCCTATGAAATTA-AGAAAATACACTTTCCATTACATA-ATAAGAAATTGACATAT
65 TAAATAATCTCTTATGAAATTACA-AAAATACCCTTTTCATTATA-AGATAAGAAATTGACATGT
*
6240284 GG
128 AG
* * *
6240286 TCAAATGGGCTATTATGCCATCATGCCATAATTACT-AAAATAACCATTTTCTTATAATTATTTA
1 CCAAATGGACTATTATGCCATCATGCCATAATTA-TGAAAAT-ACCATTCTCTTATAATTATTTA
*
6240350 CTAAACAATC
64 CTAAATAATC
6240360 CCTCAAGAAA
Statistics
Matches: 459, Mismatches: 103, Indels: 57
0.74 0.17 0.09
Matches are distributed among these distances:
127 3 0.01
128 18 0.04
129 312 0.68
130 123 0.27
131 3 0.01
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (129 bp):
CCAAATGGACTATTATGCCATCATGCCATAATTATGAAAATACCATTCTCTTATAATTATTTACT
AAATAATCTCTTATGAAATTACAAAAATACCCTTTTCATTATAAGATAAGAAATTGACATGTAG
Found at i:6240341 original size:130 final size:129
Alignment explanation
Indices: 6240008--6240361 Score: 392
Period size: 130 Copynumber: 2.7 Consensus size: 129
6239998 TTGTTATAAG
*
6240008 ATAAGAAATTGACATGTAGCCAAATGGACTATTATGCCATCATGCCATAATTA-TGAAAAT-ACC
1 ATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCATCATGCCATAATTACT-AAAATAACC
** * * * * *
6240071 ATTACTCTTATAATTGGTTACTAAATAATCTCTTAGCAAATTACAAAAATGCCTTTTCATTATAT
65 ATT-CTCTTATAATTATTTACTAAATAATCCCCTAGCAAATTACAAAAATACCTTTCCATTACAT
*
6240136 G
129 A
* * ** * * * * * * *
6240137 ATAAAAAATTGGCATGTGGCCAAATCAACAATTACGCCATCATACCATAATTACGACAATACCCC
1 ATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCATCATGCCATAATTACTAAAATAACCA
* *
6240202 TTCTATTATAATCATTTACTAAATAATCCCCTATG-AAATTA-AGAAAATACACTTTCCATTACA
66 TTCTCTTATAATTATTTACTAAATAATCCCCTA-GCAAATTACA-AAAATAC-CTTTCCATTACA
6240265 TA
128 TA
* * *
6240267 ATAAGAAATTGACATATGGTCAAATGGGCTATTATGCCATCATGCCATAATTACTAAAATAACCA
1 ATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCATCATGCCATAATTACTAAAATAACCA
* *
6240332 TTTTCTTATAATTATTTACTAAACAATCCC
66 TTCTCTTATAATTATTTACTAAATAATCCC
6240362 TCAAGAAAAT
Statistics
Matches: 180, Mismatches: 40, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
128 1 0.01
129 86 0.48
130 93 0.52
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (129 bp):
ATAAGAAATTGACATGTGGCCAAATGGACTATTATGCCATCATGCCATAATTACTAAAATAACCA
TTCTCTTATAATTATTTACTAAATAATCCCCTAGCAAATTACAAAAATACCTTTCCATTACATA
Found at i:6240618 original size:129 final size:128
Alignment explanation
Indices: 6240426--6241784 Score: 926
Period size: 130 Copynumber: 10.5 Consensus size: 128
6240416 CAAATTAACT
* * * *
6240426 ATTAAAAAAATACTCCTTCCCTTATAATTATTTACTAATTAGA-CACC-TACGAAATTACCAAAA
1 ATTACAAAAATAC-CCTTCTCTTATAATTATTTACTAAATA-ATC-CCTTATGAAATTACCAAAA
* * * * *
6240489 TGCCTTTCCTATTATATGATAAGAAATTGACATGTGATCAAATAGACAATTATTTGCTCATATTA
63 TGCCTTTCC-ATTATATGATAAGAAATTTACATGTGACCAAATGGACTATTATTTGCTCATATCA
6240554 TA
127 TA
* *
6240556 ATTACAAAAATACGCCTTCTCTTATAAGTA-TTACTAAATAATCCCTTATTAAATTACCAAAATA
1 ATTACAAAAATAC-CCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAAT-
* ** * * ** ***
6240620 CCCTTTCCATTATATGATAAGACGTTTATATAT-AGCCAAATGGACTGCTATGCCCTCATATCAT
64 GCCTTTCCATTATATGATAAGAAATTTACATGTGA-CCAAATGGACTATTATTTGCTCATATCAT
6240684 A
128 A
* * * * ** *
6240685 ATTGCAAAAA-AACCTATCTCGTACAATTATTTACTAAATAATTACTTATGAAATTACCAAAATA
1 ATTACAAAAATACCCT-TCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATG
* * * * ** *
6240749 CCATTTCCAATATATGATAAAAAATTCACATGTGGCCAAATGGACTATTATGCGCTCATATAATA
65 CC-TTTCCATTATATGATAAGAAATTTACATGTGACCAAATGGACTATTATTTGCTCATATCATA
* * *
6240814 ATTACAAAAATACCATTTCTCTTATAATTATTTACCAAATAAT-CCTATATGAAATTATCAAAAT
1 ATTACAAAAATACC-CTTCTCTTATAATTATTTACTAAATAATCCCT-TATGAAATTACCAAAAT
* * * * * * * * *
6240878 ACCTCTT-TATTCTATGATAAGAAATTAACATGTGGCTATACT-AACTATTA--TGCCTTCATAC
64 GCCT-TTCCATTATATGATAAGAAATTTACATGTGACCA-AATGGACTATTATTTG-C-TCATAT
6240939 CATA
125 CATA
** ** * * ** *
6240943 ATTATGAAAATGGCCTTGCTTTTCTAATTATTTACTAAATAATCCCTTAAAAAATTCCCAAAATG
1 ATTACAAAAATACCCTT-CTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATG
* * * * *
6241008 CCCTTTCCATTGTATGATATGAAATTTACATGTGGCCAAATTGACTA-T-TGTGCCTTCATATCA
65 -CCTTTCCATTATATGATAAGAAATTTACATGTGACCAAATGGACTATTATTTG-C-TCATATCA
6241071 TA
127 TA
** * * * * ** *
6241073 ATTATGAAAATAACCCTTCTCTTATAATTATTTGCTAGATAATTCTTTAAAAAATTACTAAAATA
1 ATTACAAAAAT-ACCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAAT-
* ** * * * * * * * *
6241138 TCCTTTTCTGTTATATGATAAGAAATTGATATATGGCTAAATGGACTATTA-TGGCCTCACATTA
64 GCC-TTTCCATTATATGATAAGAAATTTACATGTGACCAAATGGACTATTATTTG-CTCATATCA
6241202 TA
127 TA
** * * * *
6241204 ATTAGGAAAATACCCTTTCTCTTATAATTATTTAGTAAATAATCCCTTATGAAAATACTAAATTG
1 ATTACAAAAATACCC-TTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATG
* * * *
6241269 CCCTTTACATTATATGATAAGAAATTTACATGTGGCCAAATTGACTATTA--TGACCCTATATCA
65 -CCTTTCCATTATATGATAAGAAATTTACATGTGACCAAATGGACTATTATTTG-CTC-ATATCA
6241332 TA
127 TA
* * * * **
6241334 ACTAGC-CAAACACCATTTCTCTTATAATTATTTACTAAATAATCCCCCATGAAATTACCAAAAT
1 ATTA-CAAAAATACC-CTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAAT
* * * * ** * * **** *
6241398 GCCCTTTCCATTGTATGATATGAAATTCACATGTGGCCAAATTTACCACTACGAACTTATATCAT
64 G-CCTTTCCATTATATGATAAGAAATTTACATGTGACCAAATGGACTATTATTTGCTCATATCAT
6241463 A
128 A
* * * * *
6241464 ATTACGAAAAA-ACTCTTTCTTTTACAATGATTTACTAAATAATCCCCTATGAAATTACCAAAAT
1 ATTAC-AAAAATAC-CCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACC-AAA-
* * * * * *
6241528 ATG-CTTTCCAATATATGATAAGAAATTCACATGT-AGCCAAATGGACTATAATTTTCTCACAAC
62 ATGCCTTTCCATTATATGATAAGAAATTTACATGTGA-CCAAATGGACTATTATTTGCTCATATC
6241591 ATA
126 ATA
** ** * * * *
6241594 GCTATGAAAATATCTCTTCTCTTATAATTA-TTACTAAATAATTCCATATTAAATTACCAAAATT
1 ATTACAAAAATA-CCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAA-T
* * * * ** * *
6241658 CCCTTTCCCTTATATGATAAAAAATTTACATGTGACAAAATAAACTATTATGT-CTCATACCATA
64 GCCTTTCCATTATATGATAAGAAATTTACATGTGACCAAATGGACTATTATTTGCTCATATCATA
* * * * * *
6241722 ACTACGAAAAATACCCTTTATCTTATAATTACTTACCAAACAATCCC-TATGAAATTATCAAAA
1 ATTAC-AAAAATACCC-TTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAA
6241785 AACCATTTTC
Statistics
Matches: 972, Mismatches: 209, Indels: 97
0.76 0.16 0.08
Matches are distributed among these distances:
127 5 0.01
128 38 0.04
129 362 0.37
130 452 0.47
131 108 0.11
132 7 0.01
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (128 bp):
ATTACAAAAATACCCTTCTCTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGC
CTTTCCATTATATGATAAGAAATTTACATGTGACCAAATGGACTATTATTTGCTCATATCATA
Found at i:6240772 original size:369 final size:369
Alignment explanation
Indices: 6240108--6240798 Score: 768
Period size: 369 Copynumber: 1.9 Consensus size: 369
6240098 ATCTCTTAGC
* * *
6240108 AAATTACAAAAATGCCTTTTCATTATATGATAAAAAATTGGCATGTGGCCAAATCAACAATTACG
1 AAATTACAAAAATGCCTTTCCATTATATGATAAAAAATTGACATGTGACCAAATCAACAATTACG
* *
6240173 CCATCATACCATAATTACGACAATACCCCTTCTATTATAATCATTTACTAAATAATCCCCTATGA
66 CCATCATACCATAATTACAAAAATACCCCTTCTATTATAATCATTTACTAAATAATCCCCTATGA
* * * * *
6240238 AATTAAGAAAATACACTTTCCATTACATAATAAGAAATTGACATATGGTCAAATGGGCTATTATG
131 AATTAACAAAATACACTTTCCATTACATAATAAGAAATTGACATATAGCCAAATGGACTACTATG
* * * * * *
6240303 CCATCATGCCATAATTACTAAAATAACCATTTTCTTATAATTATTTACTAAACAATCCCTCAAGA
196 CCATCATACCATAATTACTAAAAAAACCATTCTCGTACAATTATTTACTAAACAATCACTCAAGA
* * * * * * *
6240368 AAATACTAAGATGCATGTTCATTAAATGGTAAAAAATTAACTTGTAGCCAAATTAACTATTAAAA
261 AAATACCAAAATCCATGTTCAATAAATGATAAAAAATTAACATGTAGCCAAATGAACTATTAAAA
6240433 AAATACTCCTTCCCTTATAATTATTTACTAATTAGACACCTACG
326 AAATACTCCTTCCCTTATAATTATTTACTAATTAGACACCTACG
* * *
6240477 AAATTACCAAAATGCCTTTCCTATTATATGATAAGAAATTGACATGTGATCAAAT-AGACAATTA
1 AAATTACAAAAATGCCTTTCC-ATTATATGATAAAAAATTGACATGTGACCAAATCA-ACAATTA
* ** * * *
6240541 TTTG-C-TCATATTATAATTACAAAAATACGCCTTCTCTTATAAGT-A-TTACTAAATAATCCCT
64 --CGCCATCATACCATAATTACAAAAATACCCCTTCTATTATAA-TCATTTACTAAATAATCCCC
* * * * * ** * * *
6240602 TATTAAATTACCAAAATACCCTTTCCATTATATGATAAGACGTTTATATATAGCCAAATGGACTG
126 TATGAAATTAACAAAATACACTTTCCATTACATAATAAGAAATTGACATATAGCCAAATGGACTA
* * * * *
6240667 CTATGCCCTCATATCATAATTGC-AAAAAAACC-TATCTCGTACAATTATTTACTAAATAATTAC
191 CTATGCCATCATACCATAATTACTAAAAAAACCAT-TCTCGTACAATTATTTACTAAACAATCAC
* * * * * * *
6240730 TTATGAAATTACCAAAATACCAT-TTCCAATATATGATAAAAAATTCACATGTGGCCAAATGGAC
255 TCAAGAAAATACCAAAAT-CCATGTT-CAATAAATGATAAAAAATTAACATGTAGCCAAATGAAC
6240794 TATTA
318 TATTA
6240799 TGCGCTCATA
Statistics
Matches: 260, Mismatches: 54, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
367 1 0.00
368 46 0.18
369 142 0.55
370 68 0.26
371 2 0.01
372 1 0.00
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (369 bp):
AAATTACAAAAATGCCTTTCCATTATATGATAAAAAATTGACATGTGACCAAATCAACAATTACG
CCATCATACCATAATTACAAAAATACCCCTTCTATTATAATCATTTACTAAATAATCCCCTATGA
AATTAACAAAATACACTTTCCATTACATAATAAGAAATTGACATATAGCCAAATGGACTACTATG
CCATCATACCATAATTACTAAAAAAACCATTCTCGTACAATTATTTACTAAACAATCACTCAAGA
AAATACCAAAATCCATGTTCAATAAATGATAAAAAATTAACATGTAGCCAAATGAACTATTAAAA
AAATACTCCTTCCCTTATAATTATTTACTAATTAGACACCTACG
Found at i:6241356 original size:261 final size:260
Alignment explanation
Indices: 6240446--6241784 Score: 944
Period size: 259 Copynumber: 5.2 Consensus size: 260
6240436 TACTCCTTCC
* * *
6240446 CTTATAATTATTTACTAATTAGA-CACC-TACGAAATTACCAAAATG-CCTTTCCTATTATATGA
1 CTTATAATTATTTACTAAATA-ATC-CCTTATGAAAATACCAAAATGCCCTTTCC-ATTATATGA
* ** * * *** *
6240508 TAAGAAATTGACATGTGATCAAATAGACAATTATTTGCTCATATTATAATTA-CAAAAATACGC-
63 TAAGAAATTTACATGTGGCCAAATTGACTATTATGCCCTCATATCATAATTAGCAAAAA-AC-CA
* * ** * * *
6240571 CTTCTCTTATAAGTA-TTACTAAATAATCCCT-TATTAAATTACCAAAATACCCTTTCCATTATA
126 TTTCTCTTATAATTATTTACTAAATAAT-CCTATAAAAAATTACTAAAATACCTTTTCTATTATA
** * * * ** * * *
6240634 TGATAAGACGTTTATATATAGCCAAATGGACTGCTATGCCCTCATATCATAATT-GCAAAAAAAC
190 TGATAAGAAATTAATATATGGCTAAATGGACTATTATGGCCTCATATCATAATTAGGAAAATAAC
*
6240698 CTATCT
255 CTTTCT
* * ** * * * *
6240704 CGTACAATTATTTACTAAATAATTACTTATGAAATTACCAAAATACCATTTCCAATATATGATAA
1 CTTATAATTATTTACTAAATAATCCCTTATGAAAATACCAAAATGCCCTTTCCATTATATGATAA
* * * * *
6240769 AAAATTCACATGTGGCCAAATGGACTATTATGCGCTCATATAATAATTA-CAAAAATACCATTTC
66 GAAATTTACATGTGGCCAAATTGACTATTATGCCCTCATATCATAATTAGCAAAAA-ACCATTTC
* ** * *
6240833 TCTTATAATTATTTACCAAATAATCCTATATGAAATTA-TCAAAATACCTCTT-TATTCTATGAT
130 TCTTATAATTATTTACTAAATAATCCTATAAAAAATTACT-AAAATACCTTTTCTATTATATGAT
* * * * * * **
6240896 AAGAAATTAACATGTGGCTATACT-AACTATTAT-GCCTTCATACCATAATTATGAAAATGGCCT
194 AAGAAATTAATATATGGCTA-AATGGACTATTATGGCC-TCATATCATAATTAGGAAAATAACCT
*
6240959 TGCT
257 TTCT
* * * * *
6240963 TTTCTAATTATTTACTAAATAATCCCTTA-AAAAATTCCCAAAATGCCCTTTCCATTGTATGATA
1 CTTATAATTATTTACTAAATAATCCCTTATGAAAA-TACCAAAATGCCCTTTCCATTATATGATA
* * * *
6241027 TGAAATTTACATGTGGCCAAATTGACTATTGTGCCTTCATATCATAATTATG-AAAATAACC-CT
65 AGAAATTTACATGTGGCCAAATTGACTATTATGCCCTCATATCATAATTA-GCAAAA-AACCATT
* * * * *
6241090 TCTCTTATAATTATTTGCTAGATAATTCTTTAAAAAATTACTAAAATATCCTTTTCTGTTATATG
128 TCTCTTATAATTATTTACTAAATAATCCTATAAAAAATTACTAAAATA-CCTTTTCTATTATATG
* * * *
6241155 ATAAGAAATTGATATATGGCTAAATGGACTATTATGGCCTCACATTATAATTAGGAAAATACCCT
192 ATAAGAAATTAATATATGGCTAAATGGACTATTATGGCCTCATATCATAATTAGGAAAATAACCT
6241220 TTCT
257 TTCT
* * * *
6241224 CTTATAATTATTTAGTAAATAATCCCTTATGAAAATACTAAATTGCCCTTTACATTATATGATAA
1 CTTATAATTATTTACTAAATAATCCCTTATGAAAATACCAAAATGCCCTTTCCATTATATGATAA
* * *
6241289 GAAATTTACATGTGGCCAAATTGACTATTATGACCCT-ATATCATAACTAGCCAAACACCATTTC
66 GAAATTTACATGTGGCCAAATTGACTATTATG-CCCTCATATCATAATTAGCAAAAAACCATTTC
*** ** * * * * *
6241353 TCTTATAATTATTTACTAAATAATCCCCCATGAAATTACCAAAATGCCCTTTCCATTGTATGATA
130 TCTTATAATTATTTACTAAATAATCCTATAAAAAATTACTAAAATACCTTTTCTATTATATGATA
* * * * * ** * * * ** * *
6241418 TGAAATTCACATGTGGCCAAATTTACCACTACGAACTTATATCATAATTACGAAAA-AACTCTTT
195 AGAAATTAATATATGGCTAAATGGACTATTATGGCCTCATATCATAATTAGGAAAATAAC-CTTT
6241482 CT
259 CT
* * * * * *** *
6241484 TTTACAATGATTTACTAAATAATCCCCTATGAAATTACCAAAATATGCTTTCCAATATATGATAA
1 CTTATAATTATTTACTAAATAATCCCTTATGAAAATACCAAAATGCCCTTTCCATTATATGATAA
* * * * *** * * ** * *
6241549 GAAATTCACATGTAGCCAAATGGACTATAATTTTCTCACAACATAGCTATG-AAAATATC-TCTT
66 GAAATTTACATGTGGCCAAATTGACTATTATGCCCTCATATCATAATTA-GCAAAAAACCAT-TT
** * * * **
6241612 CTCTTATAATTA-TTACTAAATAATTCC-ATATTAAATTACCAAAATTCCCTTTCCCTTATATGA
129 CTCTTATAATTATTTACTAAATAA-TCCTATAAAAAATTACTAAAATACCTTTTCTATTATATGA
* * * * * * ** * * * * *
6241675 TAAAAAATTTACATGTGACAAAATAAACTATTAT-GTCTCATACCATAACTACGAAAAATACCCT
193 TAAGAAATTAATATATGGCTAAATGGACTATTATGGCCTCATATCATAATTA-GGAAAATAACCT
*
6241739 TTAT
257 TTCT
* * * * *
6241743 CTTATAATTACTTACCAAACAATCCC-TATGAAATTATCAAAA
1 CTTATAATTATTTACTAAATAATCCCTTATGAAAATACCAAAA
6241785 AACCATTTTC
Statistics
Matches: 855, Mismatches: 196, Indels: 60
0.77 0.18 0.05
Matches are distributed among these distances:
257 5 0.01
258 180 0.21
259 275 0.32
260 192 0.22
261 193 0.23
262 10 0.01
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (260 bp):
CTTATAATTATTTACTAAATAATCCCTTATGAAAATACCAAAATGCCCTTTCCATTATATGATAA
GAAATTTACATGTGGCCAAATTGACTATTATGCCCTCATATCATAATTAGCAAAAAACCATTTCT
CTTATAATTATTTACTAAATAATCCTATAAAAAATTACTAAAATACCTTTTCTATTATATGATAA
GAAATTAATATATGGCTAAATGGACTATTATGGCCTCATATCATAATTAGGAAAATAACCTTTCT
Found at i:6242435 original size:130 final size:128
Alignment explanation
Indices: 6241855--6244320 Score: 1335
Period size: 129 Copynumber: 19.0 Consensus size: 128
6241845 TCCTATTTTT
* * * * * * *
6241855 TGATGAGAAAGTGACATGTGGCCAAA-TGTACTATTATGCCATAATATCATTATTATGAAAA-AC
1 TGATAAGAAATTGACATGTGGCCAAATTG-ACTATTATGCCTTCATACCATAATTA-CAAAATA-
* * * * * * *
6241918 CCCTTT-T-TAAAAATTATTTACTAAATAAACCTTAAAGAAATTACTAAAATACCATTTT-CATT
63 -CCTTTCTCTTATAATTATTTACTAAATAATCCCT-ATGAAATTACCAAAATATCATTTTCCATT
6241980 ATA
126 ATA
** ** * * * * *
6241983 CAAGCAGAAATTGACATGCGACCAAATTGACAATT-T-CGTGCTCATATCATAATTACTAAAATA
1 TGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCT--TCATACCATAATTAC-AAAATA
* * * *
6242046 -CTTATTTTTTATAATTATTTACTAAATAATCTCTTATAAAATTACCAAAATA-C-TCTTTCCAT
63 CCTT-TCTCTTATAATTATTTACTAAATAATC-CCTATGAAATTACCAAAATATCAT-TTTCCAT
6242108 TATA
125 TATA
** * * * * * * * * * *
6242112 CAATCAA-AAATTGACATGTGACTACATGGATTATTATGCCTTTATAGCTTAACTATGAAAATAC
1 TGAT-AAGAAATTGACATGTGGCCAAATTGACTATTATGCCTTCATACCATAATTA-CAAAATAC
* * * * * * *
6242176 CCTTCTTTTGTAATTATTTACTAAATAATGCCCTACGAAATTACCAAAAT-GCCTTTTGCATTAT
64 CTTTCTCTTATAATTATTTACTAAATAAT-CCCTATGAAATTACCAAAATATCATTTTCCATTAT
6242240 A
128 A
* * * * * *
6242241 TGATAAGAAATTGACATGTGACCGAATAGACTATGATGCCTTTATACTATAATTACACAAATACC
1 TGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCTTCATACCATAATTACA-AAATACC
* * *
6242306 TTTCTTTTATAATTATTTTCTAAATAATCCCTAGTGAAATTACCAAAATATCATTTTTCATTATA
65 TTTCTCTTATAATTATTTACTAAATAATCCCTA-TGAAATTACCAAAATATCATTTTCCATTATA
* * * * ***
6242371 TGGTAAGAAATTGACGTGTGACCAAATGGACTATTATTTTTTCATACCATAATTACAAATATACC
1 TGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCTTCATACCATAATTACAAA-ATA-C
* * * * * ** *
6242436 CTTTTTATAATTATTTACTAAATATTTACTAAAAAATCTCTTATGAAATTACCAAAATGCCAATT
64 C---TT-T--CT-CTTA-TAATTATTTACTAAATAATC-CCTATGAAATTACCAAAATATCATTT
*
6242501 T-CGTTATA
120 TCCATTATA
** * * * **
6242509 TGATAAGAAATTGACATG-CACCTAAATAGACTATTATGCCCTAATGTCATAATTACAAAAATAC
1 TGATAAGAAATTGACATGTGGCC-AAATTGACTATTATGCCTTCATACCATAATTAC-AAAATAC
* * * ** *
6242573 ACCTTCTCTTATAATTAGTTGCTAAATAATCCCCTA-GCAAATTATGAAAATGTC-TTTTCCATT
64 -CTTTCTCTTATAATTATTTACTAAATAAT-CCCTATG-AAATTACCAAAATATCATTTTCCATT
6242636 ATA
126 ATA
* * * * * * *
6242639 TGATAGGAAATTGACTTATGGTCAAATTGA-TAATTACGCATTCATACAATAATTACAGAAATAC
1 TGATAAGAAATTGACATGTGGCCAAATTGACT-ATTATGCCTTCATACCATAATTACA-AAATAC
* ** * *
6242703 ACTTGT-TCTTATAATTATTTACTAAATAATCCCCTGTGAAATTAAGAAAATACCCTTTTTCCAT
64 -CTT-TCTCTTATAATTATTTACTAAATAAT-CCCTATGAAATTACCAAAATA-TCATTTTCCAT
6242767 TATA
125 TATA
* * ** * * * * *
6242771 TGATAAGAAATTGATATTTGATCTAATGGA-TCACTATGCCATCATACCATAATTATGAAAATAA
1 TGATAAGAAATTGACATGTGGCCAAATTGACT-ATTATGCCTTCATACCATAATTA-CAAAAT-A
* * * * * *
6242835 CCTTTCT-TTACATAATTATTGACTAAACAATCCCTCAAGAAATTACTAAGAT-GCATTTTCCAT
63 CCTTTCTCTT--ATAATTATTTACTAAATAATCCCT-ATGAAATTACCAAAATATCATTTTCCAT
* *
6242898 CAAA
125 TATA
* * ** * ** *
6242902 T-AGTAAAAAATTGATATGTGGTGAAATTGACTATTATTCTCTT-ATATGATAATTATGAAAATA
1 TGA-TAAGAAATTGACATGTGGCCAAATTGACTATTATGC-CTTCATACCATAATTA-CAAAATA
* * * * * * *
6242965 CCCTTCCCTTATAATTATTTACTAATTAATCCCCTATGAACTTACCAAATTACCA-TTTCCATTT
63 CCTTTCTCTTATAATTATTTACTAAATAAT-CCCTATGAAATTACCAAAATATCATTTTCCATTA
6243029 TA
127 TA
* * * * * * * *
6243031 TGATAAAAAGAATTAACATGTGG-CAAATTAAACTATTATTCCCTCGT-CCTGTAACTACAAAAT
1 TGAT-AAGA-AATTGACATGTGGCCAAATT-GACTATTATGCCTTCATACC-ATAATTACAAAAT
* * * * *
6243094 ACCCTTTCTTTTATAATT-GTTACCAAATAATCCCTTATTAAATTA-CAAAATATCA-TTCCCAT
62 A-CCTTTCTCTTATAATTATTTACTAAATAATCCC-TATGAAATTACCAAAATATCATTTTCCAT
6243156 TATA
125 TATA
* * * * * * * *
6243160 TTATAAGAATTTTAGATGTGGCCAAATAGACTATCATGCCCTCATACCATAATTACAGAAAAACC
1 TGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCTTCATACCATAATTACA-AAATACC
* * * * ** * *
6243225 TATCTCATAAAATTATTTACTAAATAATCACATATGAAATTACCAAAATATC-TTTTTTAATATT
65 TTTCTCTTATAATTATTTACTAAATAATC-CCTATGAAATTACCAAAATATCATTTTCCATTATA
* * * *
6243289 TGATAAGAAATTGTCATGTGTCCAAA-TAAGCTATTATGCCTTCATACAATAATTACAAAAATAC
1 TGATAAGAAATTGACATGTGGCCAAATTGA-CTATTATGCCTTCATACCATAATTAC-AAAATAC
* * * * *
6243353 CACTTCTTTTATAGTTATTTACTAAATAATCCCATATGAAATTATCAAAATA-CCTTTTCCATTA
64 C-TTTCTCTTATAATTATTTACTAAATAATCCC-TATGAAATTACCAAAATATCATTTTCCATTA
*
6243417 CA
127 TA
** ** * * * *
6243419 TGATAAGAGGTT-ACACATGGCCATATTGACTATTATGCATTCATACCATAATTAGGAAAATGCC
1 TGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCTTCATACCATAATTA-CAAAATACC
* *
6243483 TTTACTCTTATAATTATTTACTAAATAATCTCCTA-GAAAATTTCC-AAA-ATCTTTTTCCATTA
65 TTT-CTCTTATAATTATTTACTAAATAATC-CCTATG-AAATTACCAAAATATCATTTTCCATTA
6243545 TA
127 TA
* * *** * *
6243547 TGATATGAAATTTACAAAAGGCCAAATTGACTATTATGCCCTT-ATATCATAATTATGAAAATAA
1 TGATAAGAAATTGACATGTGGCCAAATTGACTATTATG-CCTTCATACCATAATTA-CAAAAT-A
* * * * * * *
6243611 CCCTTCTCTTCTAATTATTTACTAGATAATGCCCCA-AAAATTACTAAAATACCATTTT-CATTA
63 CCTTTCTCTTATAATTATTTACTAAATAAT-CCCTATGAAATTACCAAAATATCATTTTCCATTA
6243674 TA
127 TA
* * * * * * * * *
6243676 TGATAAGAAATTGATATGTGGTCAGATGGACTATTATTCCCTCTTACTATAATTATGAAAATACC
1 TGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCTTCATACCATAATTA-CAAAATA-C
** * * * * * * * * *
6243741 CCATCTCTTATAATTGTTTAGTAAATAATCCCATATAAAAATACTAAAAT-GCCTTTTACATTGT
64 CTTTCTCTTATAATTATTTACTAAATAATCCC-TATGAAATTACCAAAATATCATTTTCCATTAT
*
6243805 T
128 A
* * * * *
6243806 TGAAAAAAAATTTACATGTGGCCAAATTGACTATTATGTCC-TCACATCATAATTACAAAAATAC
1 TGATAAGAAATTGACATGTGGCCAAATTGACTATTATG-CCTTCATACCATAATTAC-AAAATAC
* * * ** *
6243870 CTTTTCTCTTATACTTATTTACTAAATAATCCCCTATGAAATTACCATAAT-GCCCTTTCCATTG
64 C-TTTCTCTTATAATTATTTACTAAATAAT-CCCTATGAAATTACCAAAATATCATTTTCCATTA
6243934 TA
127 TA
* * * * * * *
6243936 TGATATGAAATTCATATGAGGCCAAATTAACTATTATGCCCTT-ATATCATAATTACAAAAAAAA
1 TGATAAGAAATTGACATGTGGCCAAATTGACTATTATG-CCTTCATACCATAATTAC---AAAAT
* * * * ** * *
6244000 AGCTTTCTCTAATAATTATTTACTAAATAATCTCTCGTGAAATTACTGAAAGATC-CTTTCCATT
62 ACCTTTCTCTTATAATTATTTACTAAATAATCCCT-ATGAAATTACCAAAATATCATTTTCCATT
6244064 ATA
126 ATA
* * * * *
6244067 TGAT------TT--C-TATAGCCAAA-TGAACT-TTAAT-TCTCTCATACCATAATTATGAAAAC
1 TGATAAGAAATTGACATGTGGCCAAATTG-ACTATT-ATGCCT-TCATACCATAATTA-CAAAAT
* * * * * *
6244120 ACCCTTTCTCTTATAGTTA-TTACTAAATAATCTCATATTAAATTACCGAAATATC-CTTTCCCT
62 A-CCTTTCTCTTATAATTATTTACTAAATAATC-CCTATGAAATTACCAAAATATCATTTTCCAT
*
6244183 TGTA
125 TATA
* * * * * * * *
6244187 AGATAAGAAATTTATATATGG-CAAAGTAGACTATTATGCCCTGATACTATAATTACAAAAATAC
1 TGATAAGAAATTGACATGTGGCCAAA-TTGACTATTATGCCTTCATACCATAATTAC-AAAATA-
* * * * * *
6244251 CCCTTCTCTTATAATTATTTACCAAGTAATCCATATGAAATTACCAAAATATCCTTTT-TATTAT
63 CCTTTCTCTTATAATTATTTACTAAATAATCCCTATGAAATTACCAAAATATCATTTTCCATTAT
6244315 A
128 A
6244316 TGATA
1 TGATA
6244321 TACATTAAAG
Statistics
Matches: 1812, Mismatches: 398, Indels: 255
0.74 0.16 0.10
Matches are distributed among these distances:
120 48 0.03
121 19 0.01
122 23 0.01
125 2 0.00
126 6 0.00
127 46 0.03
128 133 0.07
129 650 0.36
130 497 0.27
131 170 0.09
132 78 0.04
133 32 0.02
134 3 0.00
135 2 0.00
137 5 0.00
138 55 0.03
139 40 0.02
140 3 0.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.36
Consensus pattern (128 bp):
TGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCTTCATACCATAATTACAAAATACCT
TTCTCTTATAATTATTTACTAAATAATCCCTATGAAATTACCAAAATATCATTTTCCATTATA
Found at i:6244681 original size:129 final size:130
Alignment explanation
Indices: 6244548--6244799 Score: 355
Period size: 129 Copynumber: 1.9 Consensus size: 130
6244538 GCTCATATCA
* *
6244548 TAATTACTAAAATACATATTTTCTTAGAATTATTTACTAAAT-AGCCCTTATGAAATTACCAAAA
1 TAATTACGAAAATACATATTTTCTTAGAATTATTTACTAAATAAGCCCCTATG-AATTACCAAAA
* **
6244612 TACCTTTTTCATTATATGATAAGAAATTGACATGTGACCAAATGGACTACTATG-CCTTTATACC
65 TACCTTTTGCATTATATGATAAGAAATTGACATAAGACCAAATGGACTACTATGTCCTTTATACC
6244676 T
130 T
* * * * * *
6244677 TAATTACGAAGATACCTTTTTTCTTATACTTATTTACTAAATAATCCCCTATGAATTACCAAAAT
1 TAATTACGAAAATACATATTTTCTTAGAATTATTTACTAAATAAGCCCCTATGAATTACCAAAAT
* * *
6244742 ACCTTTTGCTTTATATGATAGGAAATTGACATAAGACCAAATGGACTATTATGTCCTT
66 ACCTTTTGCATTATATGATAAGAAATTGACATAAGACCAAATGGACTACTATGTCCTT
6244800 ATCAAATACC
Statistics
Matches: 107, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
129 95 0.89
130 12 0.11
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.38
Consensus pattern (130 bp):
TAATTACGAAAATACATATTTTCTTAGAATTATTTACTAAATAAGCCCCTATGAATTACCAAAAT
ACCTTTTGCATTATATGATAAGAAATTGACATAAGACCAAATGGACTACTATGTCCTTTATACCT
Found at i:6245383 original size:258 final size:257
Alignment explanation
Indices: 6244918--6245384 Score: 537
Period size: 258 Copynumber: 1.8 Consensus size: 257
6244908 ATTTACTAAA
* * *
6244918 TATTTACTAAAATATCCCTTATGAAATTACCAAAATACCTTTTCATTATATGATAAGAAATCAAC
1 TATTTACTAAAATATCCCTTATAAAATTAACAAAATACCTTTCCATTATATGATAAGAAATCAAC
* ** * *
6244983 ATGTAACCAAATGGATTATTATACCTTCATCACATAATTACAAAAATACCATTCTCTTATAATTA
66 ATGTAACCAAATGGACTACCATACCATCATCACATAATTACAAAAATACCATTCTCTTATAACTA
* * *** * * * **
6245048 ATTACTAAATAATCCCCTAGCTAATTATGAAAATGCCTTTTCCATTATATGATAGGAAATTGACA
131 ATTACTAAACAATCACCTAAAAAATTATGAAAATGCCATTTCAATCATATGATAAAAAATTGACA
**
6245113 TATGGTCAAATTGACAATTACGCTTTCATACCATAATTACCAAAATACCCTTCTCCCATAGT
196 TATGACCAAATTGACAATTACGCTTTCATACCATAATTACCAAAATACCCTTCTCCCATAGT
* * **
6245175 TATTTACT-AAATAATCTCTTATAAAATTAAGAAAATACCATTTCCATTATATGATAAGAAATTG
1 TATTTACTAAAAT-ATCCCTTATAAAATTAACAAAATACC-TTTCCATTATATGATAAGAAATCA
*** * ** *
6245239 ACATGTGGTCAAATGGACTACCATGCCATCAT-ACTATAATTATGAAAATAACCTTTCTCTTATA
64 ACATGTAACCAAATGGACTACCATACCATCATCAC-ATAATTACAAAAAT-ACCATTCTCTTATA
* *
6245303 ACTATTTACTAAACAATCACTTAAAAAATTACT-AAAATGCCATTTCAATCA-ATGATAAAAAAT
127 ACTAATTACTAAACAATCACCTAAAAAATTA-TGAAAATGCCATTTCAATCATATGATAAAAAAT
* * *
6245366 TGAGATGTTACCAAATTGA
191 TGACATATGACCAAATTGA
6245385 ATTTTATGCC
Statistics
Matches: 169, Mismatches: 36, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
256 4 0.02
257 32 0.19
258 81 0.48
259 51 0.30
260 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.34
Consensus pattern (257 bp):
TATTTACTAAAATATCCCTTATAAAATTAACAAAATACCTTTCCATTATATGATAAGAAATCAAC
ATGTAACCAAATGGACTACCATACCATCATCACATAATTACAAAAATACCATTCTCTTATAACTA
ATTACTAAACAATCACCTAAAAAATTATGAAAATGCCATTTCAATCATATGATAAAAAATTGACA
TATGACCAAATTGACAATTACGCTTTCATACCATAATTACCAAAATACCCTTCTCCCATAGT
Found at i:6245647 original size:128 final size:126
Alignment explanation
Indices: 6244931--6245743 Score: 387
Period size: 129 Copynumber: 6.3 Consensus size: 126
6244921 TTACTAAAAT
* * * * **
6244931 ATCCCTTATGAAATTACCAAAATACC-TTTTCATTATATGATAAGAAA-TCAACATGTAACCAAA
1 ATCCCATATGAAATTACCAAAATACCATTTCCATTATATGA-AA-AAATTTAACATATGGCCAAA
* * * * * * *
6244994 TGGATTATTATACCTTCAT-CACATAATTACAAAAATA-CCATTCTCTTATAATTAATTACTAAA
64 T-AACTATTATGCCCTCATACA-ATAATTAC-AAAATACCCTTTCTCTTATAATT-ATTACCATA
6245057 TA
125 TA
* * ** * * * * *
6245059 ATCCCCTA-GCTAATTATGAAAATGCCTTTTCCATTATATGATAGGAAA-TTGACATATGGTCAA
1 ATCCCATATG-AAATTACCAAAATACCATTTCCATTATATGA-A-AAAATTTAACATATGGCCAA
* * * ** * ** * * *
6245122 ATTGACAATTACGCTTTCATACCATAATTACCAAAATACCC-TTCTCCCATAGTTATTTACTAAA
63 A-TAACTATTATGCCCTCATACAATAATTA-CAAAATACCCTTTCTCTTATAATTA-TTACCATA
6245186 TA
125 TA
* * * ** * * *
6245188 ATCTCTTATAAAATTAAGAAAATACCATTTCCATTATATGATAAGAAA-TTGACATGTGGTCAAA
1 ATCCCATATGAAATTACCAAAATACCATTTCCATTATATGA-AA-AAATTTAACATATGGCCAAA
* ** * * * * * * * *
6245252 TGGACTACCATGCCATCATACTATAATTATGAAAATAACCTTTCTCTTATAACTATTTACTAAAC
64 T-AACTATTATGCCCTCATACAATAATTA-CAAAATACCCTTTCTCTTATAATTA-TTACCATAT
6245317 A
126 A
* * ** * * * * * * * * **
6245318 ATCACTTAAAAAATTACTAAAATGCCATTTCAATCA-ATGATAAAAAATTGAGATGTTACCAAAT
1 ATCCCATATGAAATTACCAAAATACCATTTCCATTATATGA-AAAAATTTAACATATGGCCAAA-
* * * ** * **
6245382 TGAA-TTTTATGCCTTTATATGATAATTATGAAAATACCCATTT-TCTTATAATTATTTTC-TAA
64 T-AACTATTATGCCCTCATACAATAATTA-CAAAATACCC-TTTCTCTTATAATTATTACCAT-A
6245444 TTA
125 -TA
* * * *
6245447 ATCCCCTATGAAATTACCACAATATCATTTCCATTATATGTTAAAAAATTTAATATATGGCCAAA
1 ATCCCATATGAAATTACCAAAATACCATTTCCATTATATG--AAAAAATTTAACATATGGCCAAA
* * *
6245512 TAACTATTATTCTCTCATATC-GTAATTACAAAATACCCTTTCTCTTATAATTATTACCATATA
64 TAACTATTATGCCCTCATA-CAATAATTACAAAATACCCTTTCTCTTATAATTATTACCATATA
* * * * *
6245575 ATCCCATATTAAATTACCAAAATACCTTTTTCATTATATGAAAAGAAGTTT-GCATGTGGCCAAA
1 ATCCCATATGAAATTACCAAAATACCATTTCCATTATATGAAAA-AA-TTTAACATATGGCCAAA
** * * *
6245639 TGGGCTATTATGCCCTCATACAATAATTACAAAATAACCTTTCTCTTATAATTATTTACTAAATA
64 T-AACTATTATGCCCTCATACAATAATTACAAAATACCCTTTCTCTTATAATTA-TTACCATATA
** * *
6245704 AT-CTTTATGAAATTACCAAAATACCCTTTCCATAATATGA
1 ATCCCATATGAAATTACCAAAATACCATTTCCATTATATGA
6245744 TATACATTAA
Statistics
Matches: 535, Mismatches: 121, Indels: 58
0.75 0.17 0.08
Matches are distributed among these distances:
126 4 0.01
127 15 0.03
128 145 0.27
129 273 0.51
130 81 0.15
131 16 0.03
132 1 0.00
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.36
Consensus pattern (126 bp):
ATCCCATATGAAATTACCAAAATACCATTTCCATTATATGAAAAAATTTAACATATGGCCAAATA
ACTATTATGCCCTCATACAATAATTACAAAATACCCTTTCTCTTATAATTATTACCATATA
Found at i:6246121 original size:126 final size:126
Alignment explanation
Indices: 6245958--6246263 Score: 296
Period size: 126 Copynumber: 2.4 Consensus size: 126
6245948 ATTTGACAAA
* * * * *
6245958 TATGCGCTTATATCATGATTAC-AAAAGTACCCATTTTATAATTATTTGCTAAACAATG-CCCTA
1 TATGCCCTTATACCATAATTACGAAAA-TA-CCTTTTTATAATTATTTACTAAACAA-GCCCCTA
*
6246021 CGAAATCACCCAAATACCCCTTCCATTACATGATAAGAAAGTAACATGTGA-CCAAATGGACTAT
63 CGAAATCACCAAAATACCCCTTCCATTACATGATAAGAAAGTAACATGT-ACCCAAATGGACTAT
* **
6246085 TAT-CCTCTTATACCATAATTACGAAAATACCTTTTTATAATTATTTACTAAATAAGCCCCTATT
1 TATGCC-CTTATACCATAATTACGAAAATACCTTTTTATAATTATTTACTAAACAAGCCCCTACG
* * * ** * * * * *
6246149 AAATTATCAAAATTCCTTTTCTATTATATGATAAGAAATTGACTTGTACCCAAATGGACTAT
65 AAATCACCAAAATACCCCTTCCATTACATGATAAGAAAGTAACATGTACCCAAATGGACTAT
* * *
6246211 TATGCCCATCATTCCATAATTATGAAAATGCACCTTCTCTTATAATTATTTAC
1 TATGCCC-TTATACCATAATTACGAAAAT--ACCTT-T-TTATAATTATTTAC
6246264 AAAGTAATCC
Statistics
Matches: 147, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
125 2 0.01
126 82 0.56
127 39 0.27
128 4 0.03
129 5 0.03
130 1 0.01
131 14 0.10
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.35
Consensus pattern (126 bp):
TATGCCCTTATACCATAATTACGAAAATACCTTTTTATAATTATTTACTAAACAAGCCCCTACGA
AATCACCAAAATACCCCTTCCATTACATGATAAGAAAGTAACATGTACCCAAATGGACTAT
Found at i:6246404 original size:132 final size:129
Alignment explanation
Indices: 6246245--6246662 Score: 361
Period size: 132 Copynumber: 3.2 Consensus size: 129
6246235 AAAATGCACC
* *
6246245 TTCTCTTATAA-TTATTTAC-AAAGTAAT-CCCTAAATAAATTATCAAAATGCCCTTTTCCGTTA
1 TTCTCTTA-AATTTATTTACTAAA-TAATACCCTAAA-AAATTAACAAAATGCCCTTTTCCATTA
* * * *
6246307 CATGACAAGAAATTGACATGTGCTAAAATTGACAATTACATCTTCATATCATAATTACAAAAATA
63 CAT-A-AAGAAATTGACATGTGGTAAAATTGACTATTACATCTTCATATAATAATTATAAAAATA
6246372 CCAT
126 CCAT
* * * * * *
6246376 TTCTTTTAGAATTTATTTACTAAATAATCCCCTATAAAATTAAGAAAATACCCTTTTCCATTATA
1 TTCTCTTA-AATTTATTTACTAAATAATACCCTAAAAAATTAACAAAATGCCCTTTTCCATTACA
* * * * * * *
6246441 TTATAAGAAATTGACATGTGGTCAAATGGATTATTATGACCTT-ATAAAATAATTATGAAAATAC
65 -TA-AAGAAATTGACATGTGGTAAAATTGACTATTA-CATCTTCATATAATAATTATAAAAATA-
6246505 CCA-
126 CCAT
* * * * *
6246508 TTCTCTTACATTTATTTACTAAATAATACCCTAAGAGATTACCAAAATG-CCTTTTTCATTTTAT
1 TTCTCTTAAATTTATTTACTAAATAATACCCTAAAAAATTAACAAAATGCCCTTTTCCA--TTA-
* * * * **
6246572 CATATA-AAATTTACATGTGGTGAAATTAACTATTATGTCTTCATATAATAATTATAAAAATACT
63 CATAAAGAAATTGACATGTGGTAAAATTGACTATTACATCTTCATATAATAATTATAAAAATAC-
6246636 C-T
127 CAT
6246638 TT-TCTTATAA-TTATTTACTAAATAA
1 TTCTCTTA-AATTTATTTACTAAATAA
6246663 GCTGTTATGA
Statistics
Matches: 231, Mismatches: 43, Indels: 28
0.76 0.14 0.09
Matches are distributed among these distances:
129 24 0.10
130 54 0.23
131 43 0.19
132 92 0.40
133 18 0.08
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.39
Consensus pattern (129 bp):
TTCTCTTAAATTTATTTACTAAATAATACCCTAAAAAATTAACAAAATGCCCTTTTCCATTACAT
AAAGAAATTGACATGTGGTAAAATTGACTATTACATCTTCATATAATAATTATAAAAATACCAT
Found at i:6246514 original size:263 final size:255
Alignment explanation
Indices: 6245872--6248226 Score: 895
Period size: 259 Copynumber: 9.1 Consensus size: 255
6245862 ATTCTCTTGC
* * * * * *
6245872 AATTATTTACTAAATAATCTCCTACAAAATTACCAAAATGCCTTTTCAAATTATA-G-TAAGAAA
1 AATTATTTACTAAATAAGCCCCTATAAAATTAACAAAATACCTTTTC-CATTATATGATAAGAAA
* * * * * * * * *
6245935 TTGACATGTGGTC-ATTTGACAAATATGCGCTTATATCATGATTA-CAAAAGTACCCAT-T-TTA
65 TTGACATGTGGCCAAATGGACTATTATGC-CTTATACCATAATTATGAAAA-TACCCTTCTCTTA
* * * * * * * *
6245996 TAATTATTTGCTAAACAATGCCCTACGAAATCACCCAAATACCC-CTTCCATTACATGATAAGAA
128 TAATTATTTAC-AAATAATACCCTAAGAAATTACCAAAATGCCCTTTTCCATTACATGA-AAGAA
* * * * * *
6246060 AGTAACATGTGAC-CAAATGGACTATTATCCTCTT-ATACCATAATTACGAAAATACC--TTTTT
191 ATTAACATGTG-CTAAAATTGACTATTA-CATCTTCATATCATAATTACAAAAATACCTTTTTTT
6246121 AT
254 AT
* * * *
6246123 AATTATTTACTAAATAAGCCCCTATTAAATTATCAAAATTCCTTTTCTATTATATGATAAGAAAT
1 AATTATTTACTAAATAAGCCCCTATAAAATTAACAAAATACCTTTTCCATTATATGATAAGAAAT
* ** * * *
6246188 TGACTTGTACCCAAATGGACTATTATGCCCATCATTCCATAATTATGAAAATGCACCTTCTCTTA
66 TGACATGTGGCCAAATGGACTATTATG-CC-TTATACCATAATTATGAAAATAC-CCTTCTCTTA
* * *
6246253 TAATTATTTACAAAGTAAT-CCCTAAATAAATTATCAAAATGCCCTTTTCCGTTACATGACAAGA
128 TAATTATTTACAAA-TAATACCCT-AAGAAATTACCAAAATGCCCTTTTCCATTACATGA-AAGA
* *
6246317 AATTGACATGTGCTAAAATTGACAATTACATCTTCATATCATAATTACAAAAATACCATTTCTTT
190 AATTAACATGTGCTAAAATTGACTATTACATCTTCATATCATAATTACAAAAATACC-TTT-TTT
*
6246382 TAG
253 TAT
* * *
6246385 AATTTATTTACTAAATAATCCCCTATAAAATTAAGAAAATACCCTTTTCCATTATATTATAAGAA
1 AA-TTATTTACTAAATAAGCCCCTATAAAATTAACAAAATA-CCTTTTCCATTATATGATAAGAA
* * **
6246450 ATTGACATGTGGTCAAATGGATTATTATGACCTTATAAAATAATTATGAAAATACCCATTCTCTT
64 ATTGACATGTGGCCAAATGGACTATTATG-CCTTATACCATAATTATGAAAATACCC-TTCTCTT
* * * * *
6246515 ACATTTATTTACTAAATAATACCCTAAGAGATTACCAAAATG-CCTTTTTCATTTTATCAT-ATA
127 ATAATTATTTAC-AAATAATACCCTAAGAAATTACCAAAATGCCCTTTTCCA--TTA-CATGAAA
* * * * ** * * *
6246578 -AAATTTACATGTGGTGAAATTAACTATTATGTCTTCATATAATAATTATAAAAATACTCTTTTC
188 GAAATTAACATGTGCTAAAATTGACTATTACATCTTCATATCATAATTACAAAAATAC-CTTTTT
6246642 TTAT
252 TTAT
*** * * *
6246646 AATTATTTACTAAATAAGCTGTTATGAAATTACCAAAATACCATTTCCATTATATGATAAGAAAT
1 AATTATTTACTAAATAAGCCCCTATAAAATTAACAAAATACCTTTTCCATTATATGATAAGAAAT
* * * ** *
6246711 TAATATGTGGCCAACTGGACTATTAT-TTTGTAGTACCATAATTATGAAAATACCCTTCTTTTTA
66 TGACATGTGGCCAAATGGACTATTATGCCT-TA-TACCATAATTATGAAAATACCCTTC-TCTTA
* * * * *
6246775 TAATTATTTACAAGATATTTTCAAAAAATCTCATACA-AAATTACCAAAATACCATTTT--TTTA
128 TAATTATTTAC-A-A-A---T---AATA-C-CCTA-AGAAATTACCAAAATGCCCTTTTCCATTA
* * * *** * *
6246837 -AGTGATAAAAAATTGACATGTAGC-CAAA-TGAACTATTATGGCCTT-AT-GCAATAATAAC-A
181 CA-TGA-AAGAAATTAACATGT-GCTAAAATTG-ACTATTA-CATCTTCATATC-ATAATTACAA
* **
6246896 AAATGCCTTTCTCATAT
240 AAATACCTTT-TTTTAT
* * * * * * * * *
6246913 AATTAGTTACAAAATAATCCCCTA-ATAACTTACCAAATTGCCCTTTT-AATTATATGATAGGAA
1 AATTATTTACTAAATAAGCCCCTATA-AAATTAACAAAAT-ACCTTTTCCATTATATGATAAGAA
* * * ** * * * * *
6246976 ATTAACATGTAGTCAAATTAACAATTATGCACTCATATCATAATTACGAACATACCCCTTCTCTT
64 ATTGACATGTGGCCAAATGGACTATTATGC-CTTATACCATAATTATGAAAATA-CCCTTCTCTT
* * ** ** *** *
6247041 ATAATTATTTTCTAAGTAAT-CCCTTATTAAATTAAGAAAAT-ATATTTTCCATTATATGAAAAG
127 ATAATTATTTAC-AAATAATACCC-TAAGAAATTACCAAAATGCCCTTTTCCATTACATG-AAAG
* * * * *** * * ***
6247104 AAATTGACATGTGGTTAAATGGACTATTATGCCATCATA-CATAATTACGAAAATAACCCTTCCC
189 AAATTAACATGTGCTAAAATTGACTATTACATCTTCATATCATAATTACAAAAAT-A-CCTTTTT
*
6247168 TCAT
252 TTAT
* * * * * *
6247172 AATTATTTACTAAATAA-TCCTTCAAAAAATT-ACTAAAATTCCCTTTACATTATATGATAAGAA
1 AATTATTTACTAAATAAGCCCCT-ATAAAATTAAC-AAAATACCTTTTCCATTATATGATAAGAA
* * * * * **
6247235 ATTGACATGTGGCCAAATTGACTACTATGCCCTCATATCATAATTACGAAAATATTGCTTCTCTT
64 ATTGACATGTGGCCAAATGGACTATTATG-CCTTATACCATAATTATGAAAATA-CCCTTCTCTT
* * ** * * * * *
6247300 ATAATTATTTACTAAATAATCCCCTATGAAATTAAGAAAATACAC-TCTCCGTTAAATGATAAGA
127 ATAATTATTTAC-AAATAATACCCTAAGAAATTACCAAAATGCCCTTTTCCATTACATGA-AAGA
* * * * * * *** * ** * *
6247364 AATTGACATATGGTCAAATAGGCTATTATGCCATT-ATACCATAATTATGAAAATAATCCTTATC
190 AATTAACATGTGCTAAAATTGACTATTACATC-TTCATATCATAATTACAAAAAT-A-CCTTTTT
6247428 TTAT
252 TTAT
* * * * * * *
6247432 AATTACTTT-CT-AACAA-TCCCTCA-AGAAATT-ACAAAAATGCCGTCTCCATTAAATGGTAA-
1 AATTA-TTTACTAAATAAGCCCCT-ATA-AAATTAAC-AAAATACCTTTTCCATTATATGATAAG
* * ** *
6247491 AAATTGACTTGTGGCCTAAT--A--A--AT---TT-T----TAATTACAAAAATACCGCTTCTTT
62 AAATTGACATGTGGCCAAATGGACTATTATGCCTTATACCATAATTATGAAAATACC-CTTCTCT
* * * * * * * *
6247542 TATAATT-GTTAAATAATTAATCCCCTATGAAATTACCAAAAT-ACCTTGTCTATTATATGATAA
126 TATAATTATTTACA-AA-TAATACCCTAAGAAATTACCAAAATGCCCTTTTCCATTACATGA-AA
* * * * *** **
6247605 GAAATT-CCTAGGTGGC-CAAATGGACTATTATGCCTTCATA-CAATAATTATGAAAATACCACT
188 GAAATTAAC-ATGT-GCTAAAATTGACTATTACATCTTCATATC-ATAATTACAAAAATA-C-CT
* ** *
6247667 TCTCCTCT
248 TTTTTTAT
* * * * * * * *
6247675 AATTATTTACTAAATAATCTCATATGAAATTACCAAAATACCCCTTT-CATTACATGATAAGAAG
1 AATTATTTACTAAATAAGCCCCTATAAAATTAACAAAATA-CCTTTTCCATTATATGATAAGAAA
* * * * * * ** * *
6247739 TTAACAAGTGCCCATATTGACTATTATGCCTTCATTCCATAATTATGAAAATGTCATTCCTCTTC
65 TTGACATGTGGCCAAATGGACTATTATGCCTT-ATACCATAATTATGAAAATACCCTT-CTCTTA
* ** * ** * * * *
6247804 CAAAAATTTACTAAATAATCCCCTAAGAAATTTTCAAAATGCCC-TTTCTATCATATGATATGAA
128 TAATTATTTAC-AAATAATACCCTAAGAAATTACCAAAATGCCCTTTTCCATTACATGA-AAGAA
* * * ** * * *
6247868 ATTTAGATGTGGC-CAAATTGACTATTATGTCCTCATATCCTAATTACAAAAATAACCCTTTTCT
191 ATTAACATGT-GCTAAAATTGACTATTACATCTTCATATCATAATTACAAAAAT-A-CCTTTTTT
6247932 TAT
253 TAT
* * * * * * *
6247935 AATTATTTACTAGATAATCCCTTAGAAAATT-ACAAAAATGCATTTTCCATTATATGATAACAAA
1 AATTATTTACTAAATAAGCCCCTATAAAATTAAC-AAAATACCTTTTCCATTATATGATAAGAAA
* * * * *
6247999 TTGATATGTGGCCAAATGGACTATTTTGCCCTCATACTATAATTACT-AAAATACCCTT-TTTTA
65 TTGACATGTGGCCAAATGGACTATTATG-CCTTATACCATAATTA-TGAAAATACCCTTCTCTTA
* * * * * * ** **
6248062 AAATTATTTAGTAAAT-ATCCCCTACGAAAAATACTAAAATG--CTTATTAAATTGTATGATAAG
128 TAATTATTTA-CAAATAATACCCTAAG-AAATTACCAAAATGCCCTT-TTCCATTACATGA-AAG
* * * *** * * *
6248124 AAATTTACATGTGGTCAAATTGACTATTATGCCTTTATATCATAATTATGAAAAAAAATCCTTTC
189 AAATTAACATGTGCTAAAATTGACTATTACATCTTCATATCATAATTA--CAAAAATA-CCTTT-
*
6248189 TTTTAC
250 TTTTAT
* *
6248195 AATTATTTACTAAATAATCCCCTATGAAATTA
1 AATTATTTACTAAATAAGCCCCTATAAAATTA
6248227 CCCAAATATC
Statistics
Matches: 1621, Mismatches: 351, Indels: 254
0.73 0.16 0.11
Matches are distributed among these distances:
241 1 0.00
242 15 0.01
243 117 0.07
244 27 0.02
245 20 0.01
247 2 0.00
248 1 0.00
249 1 0.00
250 6 0.00
251 44 0.03
252 18 0.01
253 11 0.01
254 16 0.01
255 7 0.00
256 17 0.01
257 74 0.05
258 204 0.13
259 306 0.19
260 298 0.18
261 26 0.02
262 69 0.04
263 88 0.05
264 60 0.04
265 4 0.00
266 9 0.01
267 111 0.07
268 42 0.03
269 21 0.01
270 6 0.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (255 bp):
AATTATTTACTAAATAAGCCCCTATAAAATTAACAAAATACCTTTTCCATTATATGATAAGAAAT
TGACATGTGGCCAAATGGACTATTATGCCTTATACCATAATTATGAAAATACCCTTCTCTTATAA
TTATTTACAAATAATACCCTAAGAAATTACCAAAATGCCCTTTTCCATTACATGAAAGAAATTAA
CATGTGCTAAAATTGACTATTACATCTTCATATCATAATTACAAAAATACCTTTTTTTAT
Found at i:6247099 original size:130 final size:130
Alignment explanation
Indices: 6246961--6248226 Score: 665
Period size: 130 Copynumber: 9.9 Consensus size: 130
6246951 TGCCCTTTTA
* * * *
6246961 ATTATATGATAGGAAATTAACATGTAGTCAAATTAACAATTATG-CACTCATATCATAATTACGA
1 ATTATATGATAAGAAATTGACATGTGGTCAAATTAACTATTATGCCA-TCATATCATAATTACGA
* * * * * *
6247025 ACATACCCCTTCTCTTATAATTATTTTCTAAGTAATCCCTTATTAAATTAAGAAAATATATTTTC
65 AAATAACCCTTCTCTTATAATTATTTACTAAATAATCCCTTATAAAATTAAGAAAATATACTTTC
6247090 C
130 C
* * **
6247091 ATTATATGAAAAGAAATTGACATGTGGTTAAATGGACTATTATGCCATCATA-CATAATTACGAA
1 ATTATATGATAAGAAATTGACATGTGGTCAAATTAACTATTATGCCATCATATCATAATTACGAA
* * * ** *
6247155 AATAACCCTTCCCTCATAATTATTTACTAAATAAT-CCTTCAAAAAATTACTAAAAT-TCCCTTT
66 AATAACCCTTCTCTTATAATTATTTACTAAATAATCCCTT-ATAAAATTAAGAAAATAT-ACTTT
*
6247218 AC
129 CC
* * * *
6247220 ATTATATGATAAGAAATTGACATGTGGCCAAATTGACTACTATGCCCTCATATCATAATTACGAA
1 ATTATATGATAAGAAATTGACATGTGGTCAAATTAACTATTATGCCATCATATCATAATTACGAA
*** * * * *
6247285 AATATTGCTTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTAAGAAAATACACTCTCC
66 AATAACCCTTCTCTTATAATTATTTACTAAATAATCCCTTATAAAATTAAGAAAATATACTTTCC
* * * * * * *
6247350 GTTAAATGATAAGAAATTGACATATGGTCAAA-TAGGCTATTATGCCATTATACCATAATTATGA
1 ATTATATGATAAGAAATTGACATGTGGTCAAATTA-ACTATTATGCCATCATATCATAATTACGA
* * * * **
6247414 AAATAATCCTTATCTTATAATTACTTT-CT-AACAATCCCTCA-AGAAATTACA-AAAAT-GCCG
65 AAATAACCCTTCTCTTATAATTA-TTTACTAAATAATCCCTTATA-AAATTA-AGAAAATATAC-
*
6247474 TCTCC
126 TTTCC
* * * * * *
6247479 ATTAAATGGTAA-AAATTGACTTGTGG-C---CTAA-TA--A----AT--T-T-TTAATTACAAA
1 ATTATATGATAAGAAATTGACATGTGGTCAAATTAACTATTATGCCATCATATCATAATTACGAA
* * * * * * * ** *
6247528 AAT-ACCGCTTCTTTTATAATTGTTAAATAATTAATCCCCTATGAAATTACCAAAATA-CCTTGT
66 AATAACC-CTTCTCTTATAATTATTTACTAAATAATCCCTTATAAAATTAAGAAAATATACTT-T
*
6247591 CT
129 CC
* * * ** * *
6247593 ATTATATGATAAGAAATT-CCTAGGTGGCCAAATGGACTATTATGCCTTCATA-CAATAATTATG
1 ATTATATGATAAGAAATTGAC-ATGTGGTCAAATTAACTATTATGCCATCATATC-ATAATTACG
* * * * * ** **
6247656 AAAAT-ACCACTTCTCCTCTAATTATTTACTAAATAATCTCATATGAAATTACCAAAATACCCCT
64 AAAATAACC-CTTCTCTTATAATTATTTACTAAATAATCCCTTATAAAATTAAGAAAATA-TACT
6247720 TT-C
127 TTCC
* * * * ** * * * *
6247723 ATTACATGATAAGAAGTTAACAAGTGCCCATATTGACTATTATGCCTTCAT-TCCATAATTATGA
1 ATTATATGATAAGAAATTGACATGTGGTCAAATTAACTATTATGCCATCATAT-CATAATTACGA
** * ** ** * *** ***
6247787 AAAT-GTCATTCCTCTTCCAAAAATTTACTAAATAATCCCCTA-AGAAATTTTCAAAATGCCCTT
65 AAATAACCCTT-CTCTTATAATTATTTACTAAATAATCCCTTATA-AAATTAAGAAAATATACTT
*
6247850 TCT
128 TCC
* * * * * * * *
6247853 ATCATATGATATGAAATTTAGATGTGGCCAAATTGACTATTATGTCC-TCATATCCTAATTACAA
1 ATTATATGATAAGAAATTGACATGTGGTCAAATTAACTATTATG-CCATCATATCATAATTACGA
* * * ** *
6247917 AAATAACCCTTTTCTTATAATTATTTACTAGATAATCCCTTAGAAAATTACA-AAAATGCATTTT
65 AAATAACCCTTCTCTTATAATTATTTACTAAATAATCCCTTATAAAATTA-AGAAAATATACTTT
6247981 CC
129 CC
* * * ** * * *
6247983 ATTATATGATAACAAATTGATATGTGGCCAAATGGACTATTTTGCCCTCATA-CTATAATTACTA
1 ATTATATGATAAGAAATTGACATGTGGTCAAATTAACTATTATGCCATCATATC-ATAATTACGA
* * * * * * ** *
6248047 AAAT-ACCCTT-TTTTAAAATTATTTAGTAAAT-ATCCCCTACGAAAAAT-ACTAAA-ATGCTTA
65 AAATAACCCTTCTCTTATAATTATTTACTAAATAATCCCTTA-TAAAATTAAGAAAATATAC-T-
**
6248107 TTAA
127 TTCC
* * * * * *
6248111 ATTGTATGATAAGAAATTTACATGTGGTCAAATTGACTATTATGCCTTTATATCATAATTATGAA
1 ATTATATGATAAGAAATTGACATGTGGTCAAATTAACTATTATGCCATCATATCATAATTACG-A
* * * * * *
6248176 AAAAAATCCTTTCTTTTACAATTATTTACTAAATAATCCCCTATGAAATTA
65 AAATAA-CCCTTCTCTTATAATTATTTACTAAATAATCCCTTATAAAATTA
6248227 CCCAAATATC
Statistics
Matches: 878, Mismatches: 195, Indels: 123
0.73 0.16 0.10
Matches are distributed among these distances:
112 4 0.00
113 25 0.03
114 34 0.04
115 10 0.01
116 1 0.00
117 2 0.00
119 1 0.00
120 2 0.00
121 1 0.00
122 1 0.00
123 2 0.00
125 2 0.00
126 2 0.00
127 12 0.01
128 94 0.11
129 161 0.18
130 467 0.53
131 22 0.03
132 27 0.03
133 8 0.01
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.36
Consensus pattern (130 bp):
ATTATATGATAAGAAATTGACATGTGGTCAAATTAACTATTATGCCATCATATCATAATTACGAA
AATAACCCTTCTCTTATAATTATTTACTAAATAATCCCTTATAAAATTAAGAAAATATACTTTCC
Found at i:6248778 original size:130 final size:131
Alignment explanation
Indices: 6248529--6250179 Score: 1186
Period size: 129 Copynumber: 12.8 Consensus size: 131
6248519 TGCCTATCCC
* * * ** * * *
6248529 ATTATTTGATGAGAAAGTT-ACATGTGGCCAAA-TGTACTATTACGTTCTAATATCAAAATTA-T
1 ATTATATGATAAGAAA-TTGACATGTGGCCAAATTG-ACTATTATGCCCTCATATTATAATTACT
* ** * * ** *
6248591 GAAAATACCCAATCTTTTGGAATTATTTAGTAAATAATCCCTTAAAAAATTATCAAAATACCTTT
64 -AAAATA-CCATTCTTTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCTTT
6248656 TCCAT
127 TCCAT
* ** *** * *
6248661 ATTATATAAGCAGAAATTGACATGCAACCAAATTGACAATTTTGCCCTCATATTATAATTACTAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCCTCATATTATAATTACTAA
* * *
6248726 AATACTATT-TTTTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCCTTTTTC
66 AATACCATTCTTTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATA-CCTTTTCC
6248790 --
130 AT
* * * * * *
6248790 ATTATGTGATAAGAAATTGACATGTGACC-AATTGGACTATTATGCCTTTATACCT-TAATTACA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATT-GACTATTATGCCCTCATA-TTATAATTACT
* * * *
6248853 AAAATACCCTTCTTTTATAATTATTTACTAAATAATGCCCTATGAAATTACCAAAATACCCTTTG
64 AAAATACCATTCTTTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCTTTTC
6248918 C--
129 CAT
* * * * * * * *
6248919 ATTATATGATAAGCAATTGACATGTGACCAAATGGACTATTCTACCCTTATACTATAATTACAAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCCTCATATTATAATTACTAA
** * * *
6248984 AATACCCATTCTTTT-TAATTATTTACTTCATAATCCCCTA-AAAATTTACCAAAATACCATGTC
66 AATA-CCATTCTTTTATAATTATTTACTAAATAATCCCCTATGAAA-TTACCAAAATACCTTTTC
6249047 CA-
129 CAT
* * ** *
6249049 A-TATATGATAATAAATTGACATGTAGG-CAAATGGACTATTATGCCCTCATACAATAATTACAA
1 ATTATATGATAAGAAATTGACATGT-GGCCAAATTGACTATTATGCCCTCATATTATAATTACTA
* * * * *
6249112 AAATACCATTTCTTTTGTAATTATTTACTAAACAATCTCATATGAAATTACCAAAATACCCTTTC
65 AAATACCA-TTCTTTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCTTTTC
6249177 C--
129 CAT
* * * * * *
6249178 ATTACATGATAAGAAGTTAACATGTGGCCATATTGACTATTATGCCTTCATATCATAATTA-TGA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCCTCATATTATAATTACT-A
* * * * * * * * *
6249242 AAATGCCCTTGCTCTTATAGTTATTTACTAAATAATCCCCTAAGGAATTTCCAAAATGCCCTTTC
65 AAATACCATT-CTTTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCTTTTC
6249307 C--
129 CAT
* * * * * * * *
6249308 ATTGT-TGATATGAAATTTACATGTGGGCAAATTGATTGTTATGCCCTTATATCATAATTA-TAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCCTCATATTATAATTACT-A
* * * * * * *
6249371 AAATAACCGTTCTCTTATAATTATTTACTAGATAATCCCCCA-AAATATTACTAAAATGCCTTTT
65 AAAT-ACCATTCTTTTATAATTATTTACTAAATAATCCCCTATGAA-ATTACCAAAATACCTTTT
6249435 CC--
128 CCAT
* * *
6249437 ATTATATGATAAGAAATTGATATGTGGCCAAATGGACTATTATGCCCTCATACTATAATTA-TGA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCCTCATATTATAATTACT-A
* * ** * * * * *
6249501 AAATACTCATTCTTTTTTAATTATTTAGTAAATAATCTTCTACGAAAATACTAAAATGCCCTTT-
65 AAATAC-CATTCTTTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCTTTTC
*
6249565 -AC
129 CAT
* * * * * * *
6249567 ATTGTACGATTAGAAATTTACATGTGGTCAAATTGACTATTATGCCTTCATATCATAATTA-TGA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCCTCATATTATAATTACT-A
* * ** * *
6249631 AAATACC-CT-TTTTATAATTATTTACTAAATAAT-CACTAAAAAATTACCAAAATGCTTTTTCC
65 AAATACCATTCTTTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCTTTTCC
6249693 --
130 AT
* * * * * *
6249693 GTTGTATGATATA-AAATTCACATGTGGCCAAATTAACTATTATGCCTTTATATTATAATTA-TA
1 ATTATATGATA-AGAAATTGACATGTGGCCAAATTGACTATTATGCCCTCATATTATAATTACTA
* * * * * *
6249756 AAAAACCGTTTCTCTTACAATAATTTACTAAATAATCCCCTATGAAATTACCAAAATATCATTTT
65 AAATACC-ATTCTTTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATA-CCTTTT
6249821 -C--
128 CCAT
* * * * ** * * ** * *
6249822 AGTATATGATAAGAAATTCATATATACCCAAATAGACTA-TAGTTCCCTCATACCATAATGACAA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTA-TGCCCTCATATTATAATTACTA
* ** * **
6249886 AAATACCCATTCTCTTATAATTA-TTACTAAATAATCCCAAATTAAATTACCAAAATGTCTTTTC
65 AAATA-CCATTCTTTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCTTTTC
6249950 C--
129 CAT
* * * * * *
6249951 GTTATATGATATGAAATTCACATGTGGCCAAATTAACTATTATGCCTTTATATTATAATTAC-AA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCCTCATATTATAATTACTAA
* * * * * *
6250015 AAAACCCTTTCTCTTACAATAATTTACTAAATAATCCCCTATGAAATTACCAAAATATCATTTTC
66 AATA-CCATTCTTTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATA-CCTTTTC
*
6250080 GAT
129 CAT
* * ** * * * **
6250083 A-T-T-TGATAAGAAATTCACATATACCCAAATGGACTATAATTCCCTCATACCATAATTAC-AA
1 ATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCCTCATATTATAATTACTAA
*
6250144 AAGTACCCATTCTCTTATAATTA-TTACTAAATAATC
66 AA-TA-CCATTCTTTTATAATTATTTACTAAATAATC
6250180 TCAAATTAAA
Statistics
Matches: 1227, Mismatches: 246, Indels: 95
0.78 0.16 0.06
Matches are distributed among these distances:
125 7 0.01
126 71 0.06
127 24 0.02
128 62 0.05
129 552 0.45
130 442 0.36
131 20 0.02
132 46 0.04
133 3 0.00
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (131 bp):
ATTATATGATAAGAAATTGACATGTGGCCAAATTGACTATTATGCCCTCATATTATAATTACTAA
AATACCATTCTTTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCTTTTCCA
T
Found at i:6249394 original size:389 final size:388
Alignment explanation
Indices: 6248548--6250179 Score: 1567
Period size: 389 Copynumber: 4.2 Consensus size: 388
6248538 TGAGAAAGTT
* ** * * * * ** * **
6248548 ACATGTGGCCAAA-TGTACTATTACGTTCTAATATCAAAATTATGAAAATACCCAATCTTTTGGA
1 ACATGTGGCCAAATTG-ACTATTATGCCCTTATATCATAATTATAAAAATAACCGTTCTCTTATA
* * * * * * **
6248612 ATTATTTAGTAAATAATCCCTTAAAAAATTATCAAAATACCTTTTCCATATTATATAAGCAGAAA
65 ATTATTTACTAAATAATCCCCTAAAAATTTACCAAAATACCATTTCCA-A-TATATGATAAGAAA
* * * * * * * *
6248677 TTGACATGCAACCAAATTGACAATTTTGCCCTCATATTATAATTACTAAAATACTATT-TTTTAT
128 TTGACATGTAGCCAAATGGACTATTATGCCCTCATACTATAATTACAAAAATACCATTCTTTTAT
* * *
6248741 AATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCCTTTTTCATTATGTGATAAGAAA
193 AATTATTTACTAAATAATCCCATATGAAATTACCAAAATACCC-TTTCCATTATATGATAAGAAA
* * * * * ** *
6248806 TTGACATGTGACC-AATTGGACTATTATGCCTTTATACCTTAATTACAAAAATACCCTTCTTTTA
257 TTAACATGTGGCCAAATT-GACTATTATGCCTTCATATCATAATTATGAAAATACCCTTCTCTTA
* * * * * * *
6248870 TAATTATTTACTAAATAATGCCCTATGAAATTACCAAAATACCCTTTGCATTATATGATAAGCAA
321 TAATTATTTACTAAATAATCCCCTAAGAAATTACCAAAATGCCCTTTCCATTGTATGATATGAAA
*
6248935 TTG
386 TTC
* * * * * * * *
6248938 ACATGTGACCAAATGGACTATTCTACCCTTATA-CTATAATTACAAAAATACCCATTCT-TTTTA
1 ACATGTGGCCAAATTGACTATTATGCCCTTATATC-ATAATTATAAAAATAACCGTTCTCTTATA
** * *
6249001 ATTATTTACTTCATAATCCCCTAAAAATTTACCAAAATACCATGTCCAATATATGATAATAAATT
65 ATTATTTACTAAATAATCCCCTAAAAATTTACCAAAATACCATTTCCAATATATGATAAGAAATT
* * *
6249066 GACATGTAGGCAAATGGACTATTATGCCCTCATACAATAATTACAAAAATACCATTTCTTTTGTA
130 GACATGTAGCCAAATGGACTATTATGCCCTCATACTATAATTACAAAAATACCA-TTCTTTTATA
* * * *
6249131 ATTATTTACTAAACAATCTCATATGAAATTACCAAAATACCCTTTCCATTACATGATAAGAAGTT
194 ATTATTTACTAAATAATCCCATATGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATT
* *
6249196 AACATGTGGCCATATTGACTATTATGCCTTCATATCATAATTATGAAAATGCCCTTGCTCTTATA
259 AACATGTGGCCAAATTGACTATTATGCCTTCATATCATAATTATGAAAATACCCTT-CTCTTATA
* * *
6249261 GTTATTTACTAAATAATCCCCTAAGGAATTTCCAAAATGCCCTTTCCATTGT-TGATATGAAATT
323 ATTATTTACTAAATAATCCCCTAAGAAATTACCAAAATGCCCTTTCCATTGTATGATATGAAATT
*
6249325 T
388 C
* * *
6249326 ACATGTGGGCAAATTGATTGTTATGCCCTTATATCATAATTATAAAAATAACCGTTCTCTTATAA
1 ACATGTGGCCAAATTGACTATTATGCCCTTATATCATAATTATAAAAATAACCGTTCTCTTATAA
* * * * * *
6249391 TTATTTACTAGATAATCCCC-CAAAATATTACTAAAATGCCTTTTCCATTATATGATAAGAAATT
66 TTATTTACTAAATAATCCCCTAAAAAT-TTACCAAAATACCATTTCCAATATATGATAAGAAATT
* * ** *
6249455 GATATGTGGCCAAATGGACTATTATGCCCTCATACTATAATTATGAAAATACTCATTCTTTTTTA
130 GACATGTAGCCAAATGGACTATTATGCCCTCATACTATAATTACAAAAATAC-CATTCTTTTATA
* * * * * * * * * *
6249520 ATTATTTAGTAAATAATCTTC-TACGAAAATACTAAAATGCCCTTTACATTGTACGATTAGAAAT
194 ATTATTTACTAAATAATC-CCATATGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAAT
* *
6249584 TTACATGTGGTCAAATTGACTATTATGCCTTCATATCATAATTATGAAAATACCCTT-T-TTATA
258 TAACATGTGGCCAAATTGACTATTATGCCTTCATATCATAATTATGAAAATACCCTTCTCTTATA
* * ** * *
6249647 ATTATTTACTAAATAAT-CACTAAAAAATTACCAAAATGCTTTTTCCGTTGTATGATATAAAATT
323 ATTATTTACTAAATAATCCCCTAAGAAATTACCAAAATGCCCTTTCCATTGTATGATATGAAATT
6249711 C
388 C
* * * *
6249712 ACATGTGGCCAAATTAACTATTATGCCTTTATATTATAATTAT-AAAA-AACCGTTTCTCTTACA
1 ACATGTGGCCAAATTGACTATTATGCCCTTATATCATAATTATAAAAATAACCG-TTCTCTTATA
* * * * *
6249775 ATAATTTACTAAATAATCCCCTATGAAA-TTACCAAAATATCATTTTCAGTATATGATAAGAAAT
65 ATTATTTACTAAATAATCCCCTA-AAAATTTACCAAAATACCATTTCCAATATATGATAAGAAAT
* * * * * * * * *
6249839 TCATATATACCCAAATAGACTA-TAGTTCCCTCATACCATAATGACAAAAATACCCATTCTCTTA
129 TGACATGTAGCCAAATGGACTATTA-TGCCCTCATACTATAATTACAAAAATA-CCATTCTTTTA
* * ** * * *
6249903 TAATTA-TTACTAAATAATCCCAAATTAAATTACCAAAATGTCTTTTCCGTTATATGATATGAAA
192 TAATTATTTACTAAATAATCCCATATGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAA
* * * * * *
6249967 TTCACATGTGGCCAAATTAACTATTATGCCTTTATATTATAATTA-CAAAAAACCCTTTCTCTTA
257 TTAACATGTGGCCAAATTGACTATTATGCCTTCATATCATAATTATGAAAATACCC-TTCTCTTA
* * * * ** * *
6250031 CAATAATTTACTAAATAATCCCCTATGAAATTACCAAAATATCATTTTCGATAT-T-TGATAAGA
321 TAATTATTTACTAAATAATCCCCTAAGAAATTACCAAAAT-GCCCTTTCCAT-TGTATGATATGA
6250094 AATTC
384 AATTC
* ** * * * * * * * * *
6250099 ACATATACCCAAATGGACTATAATTCCCTCATACCATAATTACAAAAGTACCCATTCTCTTATAA
1 ACATGTGGCCAAATTGACTATTATGCCCTTATATCATAATTATAAAAATAACCGTTCTCTTATAA
6250164 TTA-TTACTAAATAATC
66 TTATTTACTAAATAATC
6250180 TCAAATTAAA
Statistics
Matches: 1019, Mismatches: 197, Indels: 55
0.80 0.15 0.04
Matches are distributed among these distances:
383 9 0.01
384 90 0.09
385 143 0.14
386 90 0.09
387 132 0.13
388 149 0.15
389 359 0.35
390 46 0.05
391 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (388 bp):
ACATGTGGCCAAATTGACTATTATGCCCTTATATCATAATTATAAAAATAACCGTTCTCTTATAA
TTATTTACTAAATAATCCCCTAAAAATTTACCAAAATACCATTTCCAATATATGATAAGAAATTG
ACATGTAGCCAAATGGACTATTATGCCCTCATACTATAATTACAAAAATACCATTCTTTTATAAT
TATTTACTAAATAATCCCATATGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTAA
CATGTGGCCAAATTGACTATTATGCCTTCATATCATAATTATGAAAATACCCTTCTCTTATAATT
ATTTACTAAATAATCCCCTAAGAAATTACCAAAATGCCCTTTCCATTGTATGATATGAAATTC
Found at i:6250187 original size:258 final size:257
Alignment explanation
Indices: 6248531--6250194 Score: 1426
Period size: 258 Copynumber: 6.4 Consensus size: 257
6248521 CCTATCCCAT
* * * * ** * * * **
6248531 TATTTGATGAGAAAGTT-ACATGTGGCCAAATGTACTATTACGTTCTAATATCAAAATTATGAAA
1 TATTTGATAAGAAA-TTCACATGTAGCCAAATGGACTATTATGCCCTCATACCATAATTACAAAA
* * ** * * *
6248595 ATACCCAATCTTTTGGAATTATTTAGTAAATAATCCCTTAAA-AAATTATCAAAATACCTTTTCC
65 ATACCCATTCTCTTATAATTATTTACTAAATAATCCC--AAATAAATTACCAAAATGCCTTTTCC
* ** * *** * * * *
6248659 ATATTATATAAGCAGAAATTGACATGCAACCAAATTGACAATTTTGCCCTCATATTATAATTACT
128 --ATTATATGATAAGAAATTCACATGTGGCCAAATTGACTATTATGCCTTTATATTATAATTAC-
* ** * *
6248724 AAAATACTATTT-T-TTATAATTATTTACTAAATAATCCCTTATGAAATTACCAAAATACCCTTT
190 AAAAAACCCTTTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATA-CCATT
6248787 TTCA
254 TTCA
* * * * * *
6248791 TTATGTGATAAGAAATTGACATGT-GACCAATTGGACTATTATGCCTTTATACCTTAATTACAAA
1 -TATTTGATAAGAAATTCACATGTAG-CCAAATGGACTATTATGCCCTCATACCATAATTACAAA
* * * * *
6248855 AATACCC-TTCTTTTATAATTATTTACTAAATAATGCCC-TATGAAATTACCAAAATACCCTTTG
64 AATACCCATTCTCTTATAATTATTTACTAAATAAT-CCCAAAT-AAATTACCAAAATGCCTTTTC
* * * * * * * *
6248918 CATTATATGATAAGCAATTGACATGTGACCAAATGGACTATTCTACCCTTATACTATAATTACAA
127 CATTATATGATAAGAAATTCACATGTGGCCAAATTGACTATTATGCCTTTATATTATAATTACAA
* * ** * *
6248983 AAATACCCATTCT-TTTTAATTATTTACTTCATAATCCCCTA-AAAATTTACCAAAATACCATGT
192 AAA-ACCCTTTCTCTTATAATTATTTACTAAATAATCCCCTATGAAA-TTACCAAAATACCATTT
*
6249046 CCAA
255 TC-A
* * * * *
6249050 TATATGATAATAAATTGACATGTAGGCAAATGGACTATTATGCCCTCATACAATAATTACAAAAA
1 TATTTGATAAGAAATTCACATGTAGCCAAATGGACTATTATGCCCTCATACCATAATTACAAAAA
* * * * * * *
6249115 TA-CCATTTCTTTTGTAATTATTTACTAAACAATCTCATATGAAATTACCAAAATACCCTTTCCA
66 TACCCA-TTCTCTTATAATTATTTACTAAATAATCCCAAAT-AAATTACCAAAATGCCTTTTCCA
* * * * * * *
6249179 TTACATGATAAGAAGTTAACATGTGGCCATATTGACTATTATGCCTTCATATCATAATTATGAAA
129 TTATATGATAAGAAATTCACATGTGGCCAAATTGACTATTATGCCTTTATATTATAATTA-CAAA
** * * * * * * * *
6249244 ATGCCCTTGCTCTTATAGTTATTTACTAAATAATCCCCTAAGGAATTTCCAAAATGCCCTTTCCA
193 AAACCCTTTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCATTTTCA
* * * * * * * * * *
6249309 T-TGTTGATATGAAATTTACATGTGGGCAAATTGATTGTTATGCCCTTATATCATAATTATAAAA
1 TAT-TTGATAAGAAATTCACATGTAGCCAAATGGACTATTATGCCCTCATACCATAATTACAAAA
* * * * *
6249373 ATAACCGTTCTCTTATAATTATTTACTAGATAATCCCCCAAA-ATATTACTAAAATGCCTTTTCC
65 ATACCCATTCTCTTATAATTATTTACTAAATAAT--CCCAAATAAATTACCAAAATGCCTTTTCC
* * * * * * *
6249437 ATTATATGATAAGAAATTGATATGTGGCCAAATGGACTATTATGCCCTCATACTATAATTATGAA
128 ATTATATGATAAGAAATTCACATGTGGCCAAATTGACTATTATGCCTTTATATTATAATTA-CAA
* * * * * * ** * * * * * *
6249502 AATACTCATTCTTTTTTAATTATTTAGTAAATAATCTTCTACGAAAATACTAAAATGCCCTTTAC
192 AAAACCCTTTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCATTTTC
6249567 A
257 A
* * * * * * * * **
6249568 T-TGTACGATTAGAAATTTACATGTGGTCAAATTGACTATTATGCCTTCATATCATAATTATGAA
1 TAT-T-TGATAAGAAATTCACATGTAGCCAAATGGACTATTATGCCCTCATACCATAATTACAAA
* *
6249632 AATACCC-TT-T-TTATAATTATTTACTAAATAATCACTAAA-AAATTACCAAAATGCTTTTTCC
64 AATACCCATTCTCTTATAATTATTTACTAAATAATC-CCAAATAAATTACCAAAATGCCTTTTCC
* * * *
6249693 GTTGTATGATATA-AAATTCACATGTGGCCAAATTAACTATTATGCCTTTATATTATAATTATAA
128 ATTATATGATA-AGAAATTCACATGTGGCCAAATTGACTATTATGCCTTTATATTATAATTACAA
* * * *
6249757 AAAACCGTTTCTCTTACAATAATTTACTAAATAATCCCCTATGAAATTACCAAAATATCATTTTC
192 AAAACCCTTTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCATTTTC
6249822 A
257 A
* * * * * * *
6249823 GTATATGATAAGAAATTCATATATACCCAAATAGACTA-TAGTTCCCTCATACCATAATGACAAA
1 -TATTTGATAAGAAATTCACATGTAGCCAAATGGACTATTA-TGCCCTCATACCATAATTACAAA
*
6249887 AATACCCATTCTCTTATAATTA-TTACTAAATAATCCCAAATTAAATTACCAAAATGTCTTTTCC
64 AATACCCATTCTCTTATAATTATTTACTAAATAATCCCAAA-TAAATTACCAAAATGCCTTTTCC
* * *
6249951 GTTATATGATATGAAATTCACATGTGGCCAAATTAACTATTATGCCTTTATATTATAATTACAAA
128 ATTATATGATAAGAAATTCACATGTGGCCAAATTGACTATTATGCCTTTATATTATAATTACAAA
* * *
6250016 AAACCCTTTCTCTTACAATAATTTACTAAATAATCCCCTATGAAATTACCAAAATATCATTTTCG
193 AAACCCTTTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCATTTTC-
6250081 A
257 A
* * * * *
6250082 TATTTGATAAGAAATTCACATATACCCAAATGGACTATAATTCCCTCATACCATAATTACAAAAG
1 TATTTGATAAGAAATTCACATGTAGCCAAATGGACTATTATGCCCTCATACCATAATTACAAAAA
*
6250147 TACCCATTCTCTTATAATTA-TTACTAAATAATCTCAAATTAAATTACC
66 TACCCATTCTCTTATAATTATTTACTAAATAATCCCAAA-TAAATTACC
6250195 TTAATACCAT
Statistics
Matches: 1162, Mismatches: 207, Indels: 71
0.81 0.14 0.05
Matches are distributed among these distances:
254 2 0.00
255 99 0.09
256 80 0.07
257 43 0.04
258 381 0.33
259 351 0.30
260 146 0.13
261 60 0.05
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (257 bp):
TATTTGATAAGAAATTCACATGTAGCCAAATGGACTATTATGCCCTCATACCATAATTACAAAAA
TACCCATTCTCTTATAATTATTTACTAAATAATCCCAAATAAATTACCAAAATGCCTTTTCCATT
ATATGATAAGAAATTCACATGTGGCCAAATTGACTATTATGCCTTTATATTATAATTACAAAAAA
CCCTTTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCATTTTCA
Found at i:6251378 original size:129 final size:129
Alignment explanation
Indices: 6251245--6252471 Score: 846
Period size: 129 Copynumber: 9.6 Consensus size: 129
6251235 TCATATCATT
* * *
6251245 ATTATTAAAATACCCATTT-TTTATAATTATTTACTAAATCATCCTCTATGAAATTACCAAAATA
1 ATTATGAAAATACCC-TTTCCTTATAATTATTTACTAAATAATCCTCTATGAAATTACCAAAATA
* * *
6251309 CCCTTTCCATTATATGATAAAAAATTGACATGTGACCAAATAGACTATTATGCCCTTATAGCTTA
65 CCCTTTCCATTATATGATAAAAAATTGACATGTGACCAAATGGACTATTATGCCCTTATACCATA
* *
6251374 ATTATGAAAATA-CCTTTCTCTTCTAATTATTTACCAAATAATCAC-CTATGAAATTACCAAAAT
1 ATTATGAAAATACCCTTTC-CTTATAATTATTTACTAAATAATC-CTCTATGAAATTACCAAAAT
* * * *
6251437 ACCCTTTACGTTATATGATAAGAAATTGACATGTGACCAAATGAACTATTATGCCCTTATACCAT
64 ACCCTTTCCATTATATGATAAAAAATTGACATGTGACCAAATGGACTATTATGCCCTTATACCAT
6251502 A
129 A
* *
6251503 ATTATGAAAATACCC-TTCTCTCATAATAATTTACTAAATAATCCATCCTA--AAATTACCAAAA
1 ATTATGAAAATACCCTTTC-CTTATAATTATTTACTAAATAATCC-T-CTATGAAATTACCAAAA
* ** * * **
6251565 TA-CCTTT---TT-TAT--TATATGA-TGACATTTGGCCAAATGGACTATTAT-CTTTTCATACC
63 TACCCTTTCCATTATATGATAAAAAATTGACATGTGACCAAATGGACTATTATGCCCTT-ATACC
6251621 ATA
127 ATA
*
6251624 ATTATGAAAATACCC-TTCTCTTATAATTATTTACTAAA-AAT-CTCTTATGAAATTACAAAAAT
1 ATTATGAAAATACCCTTTC-CTTATAATTATTTACTAAATAATCCTC-TATGAAATTACCAAAAT
* * * * * * * *
6251686 GCCTTTTTCGTTATATGACAAAAAATTGACATGCT-CCCAAATGGA-T-TTATGCCCTAATGCCA
64 ACCCTTTCCATTATATGATAAAAAATTGACATG-TGACCAAATGGACTATTATGCCCTTATACCA
6251748 TA
128 TA
** * * * *
6251750 ATTACAAAAATTCCCTTTATCTTATAATTAGTTACTAAATAAT-CTCT-TAGCAATTTA--AATA
1 ATTATGAAAATACCCTTT-CCTTATAATTATTTACTAAATAATCCTCTAT-G-AAATTACCAA-A
* * * * ** ** * * * *
6251811 ATGCCTTTTTCATTATAAGATAGGAAATTGACATGTGGTCAAATTGACAATTACG-CTTTCATAC
62 ATACCCTTTCCATTATATGATAAAAAATTGACATGTGACCAAATGGACTATTATGCCCTT-ATAC
*
6251875 AATA
126 CATA
* * * * * *
6251879 GTTATGAAATTACCC--T-CTTATAGTTATTTACTAAATAAACCTTTATAAAATT---AAAATAC
1 ATTATGAAAATACCCTTTCCTTATAATTATTTACTAAATAATCCTCTATGAAATTACCAAAATAC
* * ** * * * * *
6251938 CCTTTCCATTATATAATAAGAAATTGACATGTGGTCAAATGGACTACTCTACCATTTTACCATA
66 CCTTTCCATTATATGATAAAAAATTGACATGTGACCAAATGGACTATTATGCCCTTATACCATA
* * * * * *
6252002 ATTATGAAAATAACCTTTCACATATAATTATTTACTAAACAATCC-CACAAGAAATTACTAAAAT
1 ATTATGAAAATACCCTTTC-CTTATAATTATTTACTAAATAATCCTC-TATGAAATTACCAAAAT
* * * * ** * * * * * * **
6252066 GCCCTGTCCATAAAATGGCAAAAAATTGATATGTGGCCAAATTGACAACTATGCCCTCATATGAT
64 ACCCTTTCCATTATATGATAAAAAATTGACATGTGACCAAATGGACTATTATGCCCTTATACCAT
6252131 A
129 A
* * * * *
6252132 CTTATGAAAATA-CCTTTCCCCTATAATAATTTACTAATTGAA-CCTCTATGAAATTACTAAAAT
1 ATTATGAAAATACCCTTT-CCTTATAATTATTTACTAAAT-AATCCTCTATGAAATTACCAAAAT
* * * * * * *
6252195 ACCATTTGCATTATATGATAAAAAATTGATATGT-AGCCAATTGAACTATTATTCTCC-CATACC
64 ACCCTTTCCATTATATGATAAAAAATTGACATGTGA-CCAAATGGACTATTATGC-CCTTATACC
6252258 ATA
127 ATA
* * * * * **
6252261 ATTA-CAAAATACCTTTTCTCTTATAATT-GTTACCAAATAATCCTTTCCGAAATTACCAAAATA
1 ATTATGAAAATACCCTTTC-CTTATAATTATTTACTAAATAATCCTCTATGAAATTACCAAAATA
* * * * * * * *
6252324 TCTTTTCCATTATATGATAAGAAGTTTACATATGACCAAATAGACTATTATG--CTTGCATACAA
65 CCCTTTCCATTATATGATAAAAAATTGACATGTGACCAAATGGACTATTATGCCCTT--ATACCA
6252387 TA
128 TA
** * * * * * *
6252389 ATTACAAAAATAACC-TTCTCTTATAACTATTTCCTAAATAATGCTATATAAAATTACCAAAATA
1 ATTATGAAAATACCCTTTC-CTTATAATTATTTACTAAATAATCCTCTATGAAATTACCAAAATA
**
6252453 CATTTTCCATTATATGATA
65 CCCTTTCCATTATATGATA
6252472 TACATTAAAA
Statistics
Matches: 862, Mismatches: 180, Indels: 112
0.75 0.16 0.10
Matches are distributed among these distances:
117 1 0.00
118 3 0.00
119 1 0.00
120 18 0.02
121 71 0.08
122 3 0.00
123 62 0.07
124 10 0.01
125 31 0.04
126 30 0.03
127 100 0.12
128 129 0.15
129 328 0.38
130 72 0.08
131 3 0.00
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.36
Consensus pattern (129 bp):
ATTATGAAAATACCCTTTCCTTATAATTATTTACTAAATAATCCTCTATGAAATTACCAAAATAC
CCTTTCCATTATATGATAAAAAATTGACATGTGACCAAATGGACTATTATGCCCTTATACCATA
Found at i:6253229 original size:130 final size:132
Alignment explanation
Indices: 6252567--6253395 Score: 521
Period size: 130 Copynumber: 6.4 Consensus size: 132
6252557 TTGTGTTCTA
** * **
6252567 ATATCATAATTATGAAAATACCCATT-CTCTTGCAATTATTTACTAAATAATCCCCTA-AAAAAT
1 ATATCATAATTACAAAAATACCCCTTCCT-TTATAATTATTTACTAAATAATCCCCTACAAAAAT
* * * * * * * * * *
6252630 TACCAAAAT--ACGTTTCCAATATTTGATAAGAAATTGACATGTAAGC-CAA-TGTACTATTATG
65 TACTAAAATGCCCTTTTCCATTGTATGATAAGAAATTTACATGT-GGCAAAATTG-ATTATTATG
*
6252691 CCTTC
128 CCCTC
* ** * * * * * * *
6252696 ATATAATAATTATGAAAATATCACTT-CTCTTATAATTATTTATTAAAAAATCCCATA-TAAATT
1 ATATCATAATTACAAAAATACCCCTTCCT-TTATAATTATTTACTAAATAATCCCCTACAAAAAT
* * * *** * * * * * * * *
6252759 TACCAAAAT-ACCATTTCCATAACATTATTAA-AAGTTAACATATGGCCATATTGAGTATCATGC
65 TACTAAAATGCCCTTTTCCATTGTATGA-TAAGAAATTTACATGTGGCAAAATTGATTATTATGC
6252822 CCTC
129 CCTC
** * * * **
6252826 ATA-CTATAATTATGAAAATA-CCTTTGCTCTTATAATTAGTTT-CTAAATAATCACCTA-AGGA
1 ATATC-ATAATTACAAAAATACCCCTTCCT-TTATAATTA-TTTACTAAATAATCCCCTACAAAA
* * *
6252887 A-T--T---ATGCCCTTTTCCATTGTATGATATGAAATTTACATGTGGCGAAATTGATTAGTATG
63 ATTACTAAAATGCCCTTTTCCATTGTATGATAAGAAATTTACATGTGGCAAAATTGATTATTATG
6252946 CCCTC
128 CCCTC
** * * *
6252951 ATATCATAATTATGAAAATAACCCTTCTTTTATAATTATTTACTAGATAATCCCC--CAAAAGAT
1 ATATCATAATTACAAAAATACCCCTTCCTTTATAATTATTTACTAAATAATCCCCTACAAAA-AT
* * * * * * *
6253014 TACTAAAATGCCTTTTTCTATTTTATGATAAGAAATTGATATGTGGCTAAATGGATTATTATGCC
65 TACTAAAATGCCCTTTTCCATTGTATGATAAGAAATTTACATGTGGCAAAATTGATTATTATGCC
6253079 CTC
130 CTC
* * * * *
6253082 A-AACTATAATTATAAAAACACCCCTTCACTTTA-AATTATTTAGTAAATAAACCCCTACAAAAA
1 ATATC-ATAATTACAAAAATACCCCTTC-CTTTATAATTATTTACTAAATAATCCCCTACAAAAA
* * * *
6253145 -TACTAAAATGCCCTTTACC-TTGTATGATAAGAAATTTACATGTAGCCAAATTGAGTATTATGC
64 TTACTAAAATGCCCTTTTCCATTGTATGATAAGAAATTTACATGTGGCAAAATTGATTATTATGC
*
6253208 CTTC
129 CCTC
* *
6253212 ATATCATAATTACAAAAATA-CCCTTTCTCTTATAATTATTTACTAAATAATCCCTTA-AAAAAT
1 ATATCATAATTACAAAAATACCCCTTCCT-TTATAATTATTTACTAAATAATCCCCTACAAAAAT
* * * * * * * * *
6253275 TACCAAAATG-CCATTTCCATTGTATAATATGAAATTCATAAGTGGCAAAATTGACTCTTATGCC
65 TACTAAAATGCCCTTTTCCATTGTATGATAAGAAATTTACATGTGGCAAAATTGATTATTATGCC
*
6253339 CTT
130 CTC
* ** * * *
6253342 ATATCATAATAACACAAAA-ACCTTTTCTTTTAGAATAATTTACTAAATAATCCC
1 ATATCATAATTACA-AAAATACCCCTTCCTTTATAATTATTTACTAAATAATCCC
6253396 TTGTGAAATT
Statistics
Matches: 552, Mismatches: 117, Indels: 61
0.76 0.16 0.08
Matches are distributed among these distances:
124 9 0.02
125 79 0.14
126 7 0.01
128 3 0.01
129 86 0.16
130 233 0.42
131 125 0.23
132 5 0.01
133 5 0.01
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (132 bp):
ATATCATAATTACAAAAATACCCCTTCCTTTATAATTATTTACTAAATAATCCCCTACAAAAATT
ACTAAAATGCCCTTTTCCATTGTATGATAAGAAATTTACATGTGGCAAAATTGATTATTATGCCC
TC
Found at i:6254306 original size:129 final size:129
Alignment explanation
Indices: 6253756--6254987 Score: 654
Period size: 129 Copynumber: 9.4 Consensus size: 129
6253746 TGATTTATGG
* ** * * * * **
6253756 CCAAATGTACTATTACACCCTAATATCATAATTATGAAAATACCCATTCTTTTGGAATTATTTAC
1 CCAAATGGACTATTATGCCCTTATACCATAATTACGAAAATACCC-TTCTCTTATAATTATTTAC
* * * * ** * * * *
6253821 TAAATAATCCCCTAAAAAATTACCGAAATGCCTTTTCCATTATACAAGCAGAAATTGAAATGCGG
65 TAAATAATCCCCTATAAAATTACCAAAATACCTTTTTCATTATATGAGAAGAAATTGATATGTGA
* * * * * * * ** *
6253886 CCAAATTGG-CAATTTTACGCTTATATCATTATTACTAAAATACTGATTTTCTTATAATTATTTA
1 CCAAA-TGGACTATTATGCCCTTATACCATAATTACGAAAATAC-CCTTCTCTTATAATTATTTA
* **** * * * * *
6253950 CTAAATATTGTTTTATGAAATCACCAAAATACCTTTTTCATTATATGATAAGAAATTGACAAGTG
64 CTAAATAATCCCCTATAAAATTACCAAAATACCTTTTTCATTATATGAGAAGAAATTGATATGTG
6254015 A
129 A
* * * * * *
6254016 CCAAATGGAATATTATGCCCATATACCTTAATTACAAAAATACCCTTCTTTTATAATTATTTAAT
1 CCAAATGGACTATTATGCCCTTATACCATAATTACGAAAATACCCTTCTCTTATAATTATTTACT
* * * * * *
6254081 AAATAATCCCATATGAAATTACCAAAATACCCTTTGT-GTTATATGATAAGAAATTGATATATGA
66 AAATAATCCCCTATAAAATTACCAAAATA-CCTTTTTCATTATATGAGAAGAAATTGATATGTGA
*** ***
6254145 CCAAATGGACTATTATGCCCTTATATTGTAATTACGAAAATAGTTTTCTCTTATAATTATTTACT
1 CCAAATGGACTATTATGCCCTTATACCATAATTACGAAAATACCCTTCTCTTATAATTATTTACT
*
6254210 AAATAATCCCCTATAAAATTACTAAAATACCTTTTTCATTATATGAGAAGAAATTGATATGT-A
66 AAATAATCCCCTATAAAATTACCAAAATACCTTTTTCATTATATGAGAAGAAATTGATATGTGA
* * *** * *
6254273 GCCGAATGGACTATTCT-TTTTTCATACCATAATTATGAAAATACCCTTCTCCTATAATTATTTA
1 -CCAAATGGACTATTATGCCCTT-ATACCATAATTACGAAAATACCCTTCTCTTATAATTATTTA
*** * * * ** *
6254337 CTAAAATTTACTAAAAATCTTTTATAAAATTACCCAAATGCCTTTTTCATCATATGATTAGGAAT
64 CT--AA---A-T---AATCCCCTATAAAATTACCAAAATACCTTTTTCATTATATGAGAAGAAAT
* *
6254402 TGACATG-CA
120 TGATATGTGA
* ** * * * * * *
6254411 TTCAAACAGACTATTATGCTCTAATGCCATAATTATGAAAATTCCCCTTCTCTTATAATTAATTA
1 -CCAAATGGACTATTATGCCCTTATACCATAATTACGAAAA-TACCCTTCTCTTATAATTATTTA
* ** ** ** * * * * * *
6254476 CTAAATAATCCCTTAGCAAATTATGAAAATGTCTTTTCCATTATATGATAGGAATTTGACACGTG
64 CTAAATAATCCCCTATAAAATTACCAAAATACCTTTTTCATTATATGAGAAGAAATTGATATGTG
6254541 A
129 A
* * * ** * ** * * * * * * *
6254542 TCAAATTGACAATTA-AACTTTCATATAATATTTACAAAAATGCCTTTCTTTTATAGTTATTAAC
1 CCAAATGGACTATTATGCCCTT-ATACCATAATTACGAAAATACCCTTCTCTTATAATTATTTAC
* * ** ** * * * *
6254606 TGAATAATCCCCTATGAAACAAAGAAAATACCCTTTCCATTATATGATAAGAAATTGACATGT-A
65 TAAATAATCCCCTATAAAATTACCAAAATACCTTTTTCATTATATGAGAAGAAATTGATATGTGA
* * * ** * * * * * *
6254670 GTCAAATAGACTACTATGCTATGATACCATAAATATGAAAATAACCTTTCTCATAAAATTATTTA
1 -CCAAATGGACTATTATGCCCTTATACCATAATTACGAAAAT-ACCCTTCTCTTATAATTATTTA
* * * * * * * * *
6254735 CTAAACAAT--CCTTTAAGACATTACTAAAATGCCCTTTCCATCAAATG-GCAGAAAATTGATAT
64 CTAAATAATCCCCTATAA-A-ATTACCAAAATACCTTTTTCATTATATGAGAAG-AAATTGATAT
*
6254797 ATGA
126 GTGA
* * ** * * *
6254801 CCAAATTGACTATTATGCCCTCATATGATAATTATGAAAATA-CATTTTCCTTATAATTATTTAC
1 CCAAATGGACTATTATGCCCTTATACCATAATTACGAAAATACCCTTCT-CTTATAATTATTTAC
* * * ** * * * *
6254865 -AAATTAATCCCTTATGAAATTACCAAAATACCATTTTCGCTATATGATAAAAAATTAACATGTG
65 TAAA-TAATCCCCTATAAAATTACCAAAATACCTTTTTCATTATATGAGAAGAAATTGATATGTG
6254929 A
129 A
* * * * *
6254930 CCAATTGAACTATTATTCTCTCATACCATAATTAC-AAAATACCCTTTCTCTTATAATT
1 CCAAATGGACTATTATGCCCTTATACCATAATTACGAAAATACCC-TTCTCTTATAATT
6254988 GTTACCAAAT
Statistics
Matches: 827, Mismatches: 240, Indels: 71
0.73 0.21 0.06
Matches are distributed among these distances:
128 28 0.03
129 399 0.48
130 285 0.34
131 10 0.01
133 1 0.00
134 2 0.00
135 1 0.00
137 2 0.00
138 75 0.09
139 24 0.03
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (129 bp):
CCAAATGGACTATTATGCCCTTATACCATAATTACGAAAATACCCTTCTCTTATAATTATTTACT
AAATAATCCCCTATAAAATTACCAAAATACCTTTTTCATTATATGAGAAGAAATTGATATGTGA
Found at i:6255385 original size:130 final size:128
Alignment explanation
Indices: 6255251--6255559 Score: 307
Period size: 130 Copynumber: 2.4 Consensus size: 128
6255241 ATCCTAATAT
* * *
6255251 AATAATTAAGAAAATACACATTCTCTTGTAATTATTTACTGAATAATCCCTTAAAAAATTACCAA
1 AATAATTAAGAAAATAC-CATTCTCTTATAATTATTTACTAAATAATCCCATAAAAAATTACCAA
* *
6255316 AATACCCTTTCTAATAAATGATAAGAAA-TTTACATTTAGG-CAAATGGACTATTATGCCTTCAC
65 AATACCCTTTCTAATAAATGATAA-AAAGTTAACA-GT-GGCCAAATGGACTATTATGCCTTCAC
6255379 AC
127 AC
* * * * * ** * *
6255381 AATAATTACGAAAAGACCTCTTCTTTTACAATTATTTACTAAATAATCCCATATGAAATTATCGA
1 AATAATTAAGAAAATACC-ATTCTCTTATAATTATTTACTAAATAATCCCATAAAAAATTACCAA
* * ** * * * *
6255446 AATACCCTTTTTATTACTTGATAAAAAGTTAACAGTGGCCATATTGACTGTTATGCCTTCATAC
65 AATACCCTTTCTAATAAATGATAAAAAGTTAACAGTGGCCAAATGGACTATTATGCCTTCACAC
* * * * *
6255510 CATAATCAAGAAAATGCCCATGCTCTTATAATTATTTAGTAAATAATCCC
1 AATAATTAAGAAAAT-ACCATTCTCTTATAATTATTTACTAAATAATCCC
6255560 CTAAGGAATT
Statistics
Matches: 143, Mismatches: 32, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
128 2 0.01
129 63 0.44
130 78 0.55
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.34
Consensus pattern (128 bp):
AATAATTAAGAAAATACCATTCTCTTATAATTATTTACTAAATAATCCCATAAAAAATTACCAAA
ATACCCTTTCTAATAAATGATAAAAAGTTAACAGTGGCCAAATGGACTATTATGCCTTCACAC
Found at i:6255930 original size:130 final size:128
Alignment explanation
Indices: 6255779--6256383 Score: 451
Period size: 129 Copynumber: 4.7 Consensus size: 128
6255769 ATTTTTGATG
* * * *
6255779 AGAAAGTGATATGTGACCAAATGTACTATTACACCCTAATATCA-TAATTACAAAAATACCCATT
1 AGAAATTGACATGTGACCAAATGTAATATTACACCCTTATA-CAGTAATTACAAAAATACCC-TT
* * * *
6255843 CTTTTAAAATTATTTACTAAATAAT-CCTATACAAAATTATCGAAATGTCTTTTTTATTATATAA
64 CTTTTATAATTATTTACTAAATAATCCCTATA-AAAATTACCAAAAT-ACTTTTTTATTATATAA
**
6255907 GC
127 TA
* * * * ** * * * *
6255909 AGAAATTGACATGCGGCCAAATTGATAATTTTGCATTCATAT-CA-TTATTACTAAAAT-GCCTA
1 AGAAATTGACATGTGACCAAA-TG-TAATATTACACCCTTATACAGTAATTACAAAAATACCCT-
* * * *
6255971 TTTTCTTTTAATTATTTACTAAATAATGCGCTAT-GAAATTACCAAAATACCTTTTTCTATTATA
63 TCTT-TTATAATTATTTACTAAATAAT-CCCTATAAAAATTACCAAAATA-CTTTTT-TATTATA
*
6256035 TGATA
124 TAATA
** * * *
6256040 AGAAATTGACATGTGACCAAATAG-AATATTATGCTCTTATACATTAATTACGAAAAA-GCCCTT
1 AGAAATTGACATGTGACCAAAT-GTAATATTACACCCTTATACAGTAATTAC-AAAAATACCCTT
* * * * *
6256103 CTCTTATAATTATTTACTAAATAATCCCT-TATAAAATTACCAAAATACCTTATGAGTCATATAA
64 CTTTTATAATTATTTACTAAATAATCCCTATA-AAAATTACCAAAATACTTTTTTA-TTATATAA
6256167 TA
127 TA
* * ** * *
6256169 AGAAATTGACATGTGATCAAAT-AAACTATTATGCCCTTATACAGTAATTACGAAAATACACTTC
1 AGAAATTGACATGTGACCAAATGTAA-TATTACACCCTTATACAGTAATTACAAAAATACCCTTC
* * ** * *
6256233 TTTTATAATTATTTACTAAGTAATCCCAATTGAAATTACCAAAATACATTTTTCATTATATGATA
65 TTTTATAATTATTTACTAAATAATCCCTATAAAAATTACCAAAATAC-TTTTTTATTATATAATA
* * **** * *
6256298 AGAAATTGACATGTGACCAAATGGACTATTA-TTTTTTCATACCA-TAATTACAAAAACACTCTT
1 AGAAATTGACATGTGACCAAATGTAATATTACACCCTT-ATA-CAGTAATTACAAAAATACCCTT
*
6256361 CTCTTATAATTATTTACTAAATA
64 CTTTTATAATTATTTACTAAATA
6256384 TTTATTAAAA
Statistics
Matches: 377, Mismatches: 74, Indels: 49
0.75 0.15 0.10
Matches are distributed among these distances:
128 11 0.03
129 193 0.51
130 113 0.30
131 39 0.10
132 21 0.06
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (128 bp):
AGAAATTGACATGTGACCAAATGTAATATTACACCCTTATACAGTAATTACAAAAATACCCTTCT
TTTATAATTATTTACTAAATAATCCCTATAAAAATTACCAAAATACTTTTTTATTATATAATA
Found at i:6255987 original size:570 final size:573
Alignment explanation
Indices: 6255029--6256297 Score: 1352
Period size: 570 Copynumber: 2.2 Consensus size: 573
6255019 TTATAATAAG
* * * *
6255029 TTTACATGTAGCCAAATGGACTATTATGCCTTCATACAATAATTACAAAAATAACTCTTCTCTTA
1 TTTACATGTAACAAAATGAACTATTATGCCCTCATACAATAATTACAAAAATAACTCTTCTCTTA
*
6255094 TAATTATTTTCTAAATAATCCCATATGAAATTACTAAAATACACTTTCCATTATATGATATACAT
66 TAATTATTTTCTAAATAATCCCATATGAAATTACCAAAATACACTTTCCATTATATGATATACAT
*
6255159 TAAAAAAATCTCTTACCAAATTACAAAATTGCCCATCCCACTATTTGATGAGAAAGTGACATATG
131 TAAAAAAATCACTTACCAAATTACAAAATTGCCCATCCCACTATTTGATGAGAAAGTGACATATG
* * **
6255224 TCCAAATGTACTATTCTATCCTAATATAATAATTAAGAAAATACACATTCTCTTGTAATTATTTA
196 ACCAAATGTACTATTCTACCCTAATATAATAATTAAGAAAATACACATTCTCTTAAAATTATTTA
* * * * *
6255289 CTGAATAATCCCTTAAAAAATTACCAAAATACCCTTTCTAATAAATGATAAGAAATTTACATTTA
261 CTAAATAATCCCTTAAAAAATTACCAAAATACCCTTTCTAATAAATAAGAAGAAATTGACATTGA
*
6255354 GGCAAATGGACTATTATGCCTTCACACAATAATTACGAAAAGACCTCTTCTTTTACAATTATTTA
326 GGCAAATGGACTATTATGCATTCACACAATAATTACGAAAAGACCTCTTCTTTTA-AATTATTTA
* *
6255419 CTAAATAAT-CCCATATGAAATTATCGAAATACCCTTTT-TATTACT-TGATAA-AAAGTTAACA
390 CTAAATAATGCCC-TATGAAATTACCAAAATACCCTTTTCTATTA-TATGATAAGAAA-TTAACA
* * * * * *
6255480 -GTGGCCATATTGACTGTTATGC-CTTCATACCA-TAATCAAGAAAATGCCCATGCTCTTATAAT
452 TGTGACCAAATAGAATATTATGCTCTT-ATA-CATTAATCAAGAAAAAGCCC-TGCTCTTATAAT
*
6255542 TATTTAGTAAATAATCCCCTAAGGAATTTCTAAATGCCCTTTCCATTATATGGTATGAAA
514 TATTTACTAAATAATCCCCTAAGGAATTTCTAAATGCCCTTTCCATTATATGGTATGAAA
* * * *
6255602 TTTACATGTAACAAAATTAACTATTATGCCCTCATAGC-ATAATTACAAAAAT-GCCCTTTCTTT
1 TTTACATGTAACAAAATGAACTATTATGCCCTCATA-CAATAATTACAAAAATAACTC-TTCTCT
* *
6255665 TATAATTATTTT-TCAAATAATCCC-TATG-AATTACCAAAATACCCTTTCCATTATCTGATATA
64 TATAATTATTTTCT-AAATAATCCCATATGAAATTACCAAAATACACTTTCCATTATATGATATA
* * * *
6255727 CATT-AAAGAATCACTTACCAAAATTACAAAATTGCCTATCCCA-TTTTTGATGAGAAAGTGATA
128 CATTAAAAAAATCACTTACC-AAATTACAAAATTGCCCATCCCACTATTTGATGAGAAAGTGACA
* * * *
6255790 TGTGACCAAATGTACTATTAC-ACCCTAATATCATAATTACA-AAAATACCCATTCTTTTAAAAT
192 TATGACCAAATGTACTATT-CTACCCTAATATAATAATTA-AGAAAATACACATTCTCTTAAAAT
* * * ** * * * * *
6255853 TATTTACTAAATAAT-CCTATACAAAATTATCGAAATGTCTTTTTTATTATATAAGCAGAAATTG
255 TATTTACTAAATAATCCCT-TAAAAAATTACCAAAATACCCTTTCTAATAAATAAGAAGAAATTG
* * * * * * *
6255917 ACA-TGCGGCCAAATTGA-TAATTTTGCATTCATATC-ATTATTACTAAAATG-CCTATTTTCTT
319 ACATTGAGG-CAAATGGACT-ATTATGCATTCACA-CAATAATTACGAAAA-GACC--TCTTCTT
* *
6255978 TT-AATTATTTACTAAATAATGCGCTATGAAATTACCAAAATACCTTTTTCTATTATATGATAAG
378 TTAAATTATTTACTAAATAATGCCCTATGAAATTACCAAAATACCCTTTTCTATTATATGATAAG
* * * *
6256042 AAATTGACATGTGACCAAATAGAATATTATGCTCTTATACATTAATTACGAAAAAGCCCTTCTCT
443 AAATTAACATGTGACCAAATAGAATATTATGCTCTTATACATTAATCAAGAAAAAGCCCTGCTCT
* * * * * * * **
6256107 TATAATTATTTACTAAATAATCCCTTATA-AAATTACCAAAAT-ACCTTAT-GAGTCATATAATA
508 TATAATTATTTACTAAATAATCCCCTA-AGGAATT-TCTAAATGCCCTT-TCCA-TTATATGGTA
*
6256169 AGAAA
569 TGAAA
* * * * * * * *
6256174 TTGACATGTGATC-AAATAAACTATTATGCCCTTATACAGTAATTACGAAAAT-ACACTTCTTTT
1 TTTACATGT-AACAAAATGAACTATTATGCCCTCATACAATAATTACAAAAATAACTCTTCTCTT
* * * *
6256237 ATAATTATTTACTAAGTAATCCCA-ATTGAAATTACCAAAATACATTTTTCATTATATGATA
65 ATAATTATTTTCTAAATAATCCCATA-TGAAATTACCAAAATACACTTTCCATTATATGATA
6256298 AGAAATTGAC
Statistics
Matches: 580, Mismatches: 86, Indels: 60
0.80 0.12 0.08
Matches are distributed among these distances:
569 7 0.01
570 203 0.35
571 148 0.26
572 116 0.20
573 105 0.18
574 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (573 bp):
TTTACATGTAACAAAATGAACTATTATGCCCTCATACAATAATTACAAAAATAACTCTTCTCTTA
TAATTATTTTCTAAATAATCCCATATGAAATTACCAAAATACACTTTCCATTATATGATATACAT
TAAAAAAATCACTTACCAAATTACAAAATTGCCCATCCCACTATTTGATGAGAAAGTGACATATG
ACCAAATGTACTATTCTACCCTAATATAATAATTAAGAAAATACACATTCTCTTAAAATTATTTA
CTAAATAATCCCTTAAAAAATTACCAAAATACCCTTTCTAATAAATAAGAAGAAATTGACATTGA
GGCAAATGGACTATTATGCATTCACACAATAATTACGAAAAGACCTCTTCTTTTAAATTATTTAC
TAAATAATGCCCTATGAAATTACCAAAATACCCTTTTCTATTATATGATAAGAAATTAACATGTG
ACCAAATAGAATATTATGCTCTTATACATTAATCAAGAAAAAGCCCTGCTCTTATAATTATTTAC
TAAATAATCCCCTAAGGAATTTCTAAATGCCCTTTCCATTATATGGTATGAAA
Found at i:6256217 original size:129 final size:125
Alignment explanation
Indices: 6255974--6257213 Score: 769
Period size: 130 Copynumber: 9.5 Consensus size: 125
6255964 ATGCCTATTT
* *
6255974 TCTTTTAATTATTTACTAAATAATGCGCTATGAAATTACCAAAATACCTTTTTCTATTATATGAT
1 TCTTATAATTATTTACTAAATAAT-CCCTATGAAATTACCAAAATACC-TTTTC-ATTATATGAT
6256039 AAGAAATTGACATGTGACCAAATAGAA-TATTATGCTCTTATACATTAATTACGAAAAAGCCCTT
63 AAGAAATTGACATGTGACCAAATA-AACTATTATGCTCTTATACA-TAATTACGAAAAA-CCCTT
6256103 C
125 C
* * * * *
6256104 TCTTATAATTATTTACTAAATAATCCCTTATAAAATTACCAAAATACCTTATGAGTCATATAATA
1 TCTTATAATTATTTACTAAATAATCCC-TATGAAATTACCAAAATACCTTTTCA-TTATATGATA
* * *
6256169 AGAAATTGACATGTGATCAAATAAACTATTATGCCCTTATACAGTAATTACGAAAATACACTTC
64 AGAAATTGACATGTGACCAAATAAACTATTATGCTCTTATACA-TAATTACGAAAA-ACCCTTC
* * * *
6256233 TTTTATAATTATTTACTAAGTAATCCCAATTGAAATTACCAAAATACATTTTTCATTATATGATA
1 TCTTATAATTATTTACTAAATAATCCCTA-TGAAATTACCAAAATAC-CTTTTCATTATATGATA
** * *
6256298 AGAAATTGACATGTGACCAAATGGACTATTAT-TTTTTCATACCATAATTAC-AAAAACACTCTT
64 AGAAATTGACATGTGACCAAATAAACTATTATGCTCTT-ATA-CATAATTACGAAAAAC-C-CTT
6256361 C
125 C
* * * ** *
6256362 TCTTATAATTATTTACTAAATATTTATTAAAAAATCTCTTTCAAAATTATGAAAATGCCCTTTTC
1 TCTTATAATTATTTACT--A-A---A-T----AATCCCTAT-GAAATTACCAAAAT-ACCTTTTC
* * * * * ** ** * *
6256427 ATTGTATGATAAGAAACTAACA-ATCACCTAAATGGACTATTATGCTCGAATGCCATAATTATGA
53 ATTATATGATAAGAAATTGACATGTGACC-AAATAAACTATTATGCTCTTAT-ACATAATTACGA
* *
6256491 AAATTCCCCTCC
116 AAA--ACCCTTC
* * * *
6256503 TTTTATAATTAGTTACTAAATAATCCCCTA-GCAAATTACAAAAATACATTTTCCATTATATGAT
1 TCTTATAATTATTTACTAAATAAT-CCCTATG-AAATTACCAAAATACCTTTT-CATTATATGAT
** * * ** * ** *
6256567 TGGATATTGACATGTCG-TCAAATTGACAATTACACT-TTCATACTATAATTACGAAAATACCTT
63 AAGAAATTGACATGT-GACCAAATAAACTATTATGCTCTT-ATAC-ATAATTACGAAAA-ACC-C
6256630 TTC
123 TTC
* * ** * * *
6256633 TCTTATAGTTATTTACTAAACAATCTCCTATGAAATTAAAAAAATACCCTCTCTATTATACGATC
1 TCTTATAATTATTTACTAAATAATC-CCTATGAAATTACCAAAATACCTTTTC-ATTATATGAT-
** ** ** * * * * *
6256698 AA-AAATTGATGTGTGGTCAAATGGACTACTATACTATGATACCATAATTATGAAAATAACCCTT
63 AAGAAATTGACATGTGACCAAATAAACTATTATGCTCTTATA-CATAATTACG-AAA-AACCCTT
6256762 C
125 C
* * * * * * * * *
6256763 CCATATAATTATTTACTAAACAATCCCCTAAGAAATTACTAAAATGCCTTTTCCATCAAATGGTA
1 TCTTATAATTATTTACTAAATAAT-CCCTATGAAATTACCAAAATACCTTTT-CATTATATGATA
* * * * ** * * * * *
6256828 AAAAATTAATATGTGGCCAAATTTACTATCATGCCCTCATATGATAATTATGAAAATACCCTTC
64 AGAAATTGACATGTGACCAAATAAACTATTATGCTCTTATA-CATAATTACGAAAA-ACCCTTC
* * *
6256892 CCTTATAATTATTCACTAATTAACTCCCTATGAAATTACCAAAATACCATTTTCATTATATGATA
1 TCTTATAATTATTTACTAAATAA-TCCCTATGAAATTACCAAAATACC-TTTTCATTATATGATA
* * * * * * * *
6256957 AAAAATTAACATGTGGCCAATTGAACTATTATTC-CTTCGTACA-ATATTAC-AAAATATCCTTT
64 AGAAATTGACATGTGACCAAATAAACTATTATGCTCTT-ATACATA-ATTACGAAAA-A-CCCTT
6257019 C
125 C
* * * * *
6257020 TCTTATAATT-GTTACCAAATAATCCTTTATTAAATTACCAAAATACCCTTTTCATTATATTATA
1 TCTTATAATTATTTACTAAATAATCC-CTATGAAATTACCAAAATA-CCTTTTCATTATATGATA
* * * ** * * * *
6257084 AGAAGTTTACATGTGGCCAAATGGATTATTATGCCCTCATACAATAATTA-GAAAAATAACTCTT
64 AGAAATTGACATGTGACCAAATAAACTATTATGCTCTTATAC-ATAATTACG--AAA-AACCCTT
6257148 C
125 C
*
6257149 TCTTATAATTATTTACTAAATAATCCCATATGAAATTACCAAAATACACTTTCCATTATATGATA
1 TCTTATAATTATTTACTAAATAATCCC-TATGAAATTACCAAAATAC-CTTTTCATTATATGATA
6257214 TACATTAAAA
Statistics
Matches: 871, Mismatches: 172, Indels: 134
0.74 0.15 0.11
Matches are distributed among these distances:
126 3 0.00
127 79 0.09
128 41 0.05
129 294 0.34
130 334 0.38
131 18 0.02
132 2 0.00
134 1 0.00
135 1 0.00
136 1 0.00
138 1 0.00
139 6 0.01
140 64 0.07
141 24 0.03
142 1 0.00
143 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.36
Consensus pattern (125 bp):
TCTTATAATTATTTACTAAATAATCCCTATGAAATTACCAAAATACCTTTTCATTATATGATAAG
AAATTGACATGTGACCAAATAAACTATTATGCTCTTATACATAATTACGAAAAACCCTTC
Found at i:6257977 original size:571 final size:566
Alignment explanation
Indices: 6256769--6258312 Score: 1302
Period size: 571 Copynumber: 2.7 Consensus size: 566
6256759 CTTCCCATAT
* * *
6256769 AATTATTTACTAAACAATCCCCTAAGAAATTACTAAAATGCCTTTTCCATCAAATGGTAAAAAAT
1 AATTATTTACT-AATAATCCCCTAAGAAATTAC-AAAATGCCTTTTCCATTATATGG-AAAAAAT
* * ** * *
6256834 TAATATGTGGCCAAATTTACTATCATGCCCTCATATGATAATTATGAAAATACCCTTCCCTTATA
63 TGACATGTGGCCAAATGGACTATCATGCCCTCACATAATAATTATGAAAATACCCTTCCCTTATA
*
6256899 ATTATTCACTAATTAACTCCCTATGAAATTACCAAAATACCATTTTCATTATATGATAAAAAATT
128 ATTATTCACTAA-TAACTCCCTATGAAATTACCAAAATACCATTCTCATTATATGATAAAAAATT
* * * * *
6256964 AACATGTGGCCAATTGAACTATTATTCCTTCGTACAATATTACAAAATATCCTTTCTCTTATAAT
192 AACATGTAGCCAATTGAACTATTATGCCTTCATACAATATTACAAAATATCCCTACTCTTATAAT
** * * * *
6257029 TGTTACCAAATAATCCTTTATTAAATTACCAAAATACCCTTTTCATTATATTATAAGAAGTTTAC
257 TGTTACCAAATAATCCTTTAGGAAATTACCAAAATACCATTTCCATTATATGATAAGAAATTTAC
* * * * * *
6257094 ATGTGGCCAAATGGATTATTATGCCCTCATACAATAATTAGAAAAATAACTCTTCTCTTATAATT
322 ATATGGCAAAATGGACTATTATACCCTCACACAATAATTAGAAAAATAACCCTTCTCTTATAATT
* **
6257159 ATTTACTAAATAATCCCATATGAAATTACCAAAATACACTTTCCATTATATGATATACATTAAAA
387 ATTTACAAAATAATCCCATATGAAATTACCAAAATACACTTTCCATTATACCATATACATTAAAA
* * * * *
6257224 AAATCCCTAGCCAAATTACAAAATTACCTATCACATTATTTGATGAGAAAGTGACATGTGTCCAA
452 AAAT-CCTAGACAAATAACAAAATTACCCATCACATTATTTGATGAGAAAATGACATGTGACCAA
* *
6257289 ATGTACTATTATGTCCAAATATCATAACTATGAAAATACCTATTATCTTGT
516 ATGTACTATTATGTCCAAATATCATAACTACGAAAATACCTATTATCTTGA
*
6257340 AATTATTTACTAATAATCCCCT-AGAAAATTACCAAAATAGCC-TTTCCAATATAT-GATAAGAA
1 AATTATTTACTAATAATCCCCTAAG-AAATTA-CAAAAT-GCCTTTTCCATTATATGGA-AA-AA
* * **
6257402 ATTGACATGTAGG-CAAATGGACTATTATGCCCTCACATAATGATTATGAAAATACCACTTTTCT
61 ATTGACATGT-GGCCAAATGGACTATCATGCCCTCACATAATAATTATGAAAATACC-CTTCCCT
* *
6257466 TCTAATTATGT-AC-AA-AACGATCCCATATGAAATTACCAAAATACCCATTCT-ATTATTTGAT
124 TATAATTAT-TCACTAATAAC--TCCC-TATGAAATTACCAAAATA-CCATTCTCATTATATGAT
* * * * *
6257527 AAGAAGTTAACATGTAGCGATGTTG-ACTATTATGCCTTCATACCATATTACAAAA-ATGCCCCT
184 AAAAAATTAACATGTAGCCA-ATTGAACTATTATGCCTTCATACAATATTACAAAATAT--CCCT
* * * * * *
6257590 ACTCTTATAATTATTTAGCAAATAAT-CTTCTAGGGAATTTCCAAAATGCCATTTCCATTGTATG
246 ACTCTTATAATT-GTTACCAAATAATCCTT-TAGGAAATTACCAAAATACCATTTCCATTATATG
* * * * ** * *
6257654 ATATGAAATTTACCTATGGCAAAATTGACTATTATACCTTCACATTATAATTA-TAAAATACCCC
309 ATAAGAAATTTACATATGGCAAAATGGACTATTATACCCTCACACAATAATTAGAAAAATAACCC
** * * * *
6257718 TTCTCTTATAATTATTTACAAAATAAT-CTTTGTGAAATTACCAATATACCCTTTCCCTTAT-CC
374 TTCTCTTATAATTATTTACAAAATAATCCCATATGAAATTACCAAAATACACTTTCCATTATACC
* * * * *
6257781 A-ATACATTAAAGAAACAT-TTA-ACAAATAACAAAATTTCCCATCCCATTTTTTTTTATGAGAA
439 ATATACATTAAA-AAA-ATCCTAGACAAATAACAAAATTACCCATCACA--TTATTTGATGAGAA
* * * * * *
6257843 AATGATATGTGACCAAATGTACTATTATG-CCATAGTATCATAATTACGAAAAT-TCTCATTCTT
500 AATGACATGTGACCAAATGTACTATTATGTCCA-AATATCATAACTACGAAAATACCT-ATTATC
6257906 TTGA
563 TTGA
** ** * *
6257910 AATTATTTGTTAAATAATCCTTTAAGAAATTATCGAAATGCCTTTTCCATTATATAGGCAAAAAT
1 AATTATTTACT-AATAATCCCCTAAGAAATTA-CAAAATGCCTTTTCCATTATAT-GGAAAAAAT
* * * ** ** * * * **
6257975 TGACATGCGACCAAATTGA-TAGTTTTGTGCTCATATCATTATTACT-AAAATACCCATTTTCTT
63 TGACATGTGGCCAAATGGACTA-TCATGCCCTCACATAATAATTA-TGAAAATACCC-TTCCCTT
* * *
6258038 ATAATTATTTACTAAATAA-TGCCCTATGAAACTACCAAAATACCATT-TCCATTATATGATAAG
125 ATAATTATTCACT-AATAACT-CCCTATGAAATTACCAAAATACCATTCT-CATTATATGATAAA
* * * ** * *
6258101 CAATTGACATGT-GACCAAATGGAA-TATTATGCCCTT-ATACCTTAATTATGAAAATA-CCCTT
187 AAATTAACATGTAG-CC-AATTGAACTATTATG-CCTTCATACAAT-ATTA-CAAAATATCCCTA
* * * * * *
6258162 CTCTTATAATTATTTACTAAATAAT-CTCCTATGAAATTACCAAAATACCCTTT--GTGTATATG
247 CTCTTATAATT-GTTACCAAATAATCCT-TTAGGAAATTACCAAAATACCATTTCCAT-TATATG
* * * * * * * *
6258224 ATAAGGAATTAACATGTGACCAAATGGACTATTATGCCCTTA-A-AATGTAAATATG-AAAAT-A
309 ATAAGAAATTTACATATGGCAAAATGGACTATTATACCCTCACACAA--TAATTA-GAAAAATAA
* *
6258285 CCCTTCTCCTATAATTATTTACTAAATA
371 CCCTTCTCTTATAATTATTTACAAAATA
6258313 TTTACCCAAA
Statistics
Matches: 786, Mismatches: 135, Indels: 105
0.77 0.13 0.10
Matches are distributed among these distances:
568 25 0.03
569 25 0.03
570 241 0.31
571 329 0.42
572 79 0.10
573 84 0.11
574 3 0.00
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.35
Consensus pattern (566 bp):
AATTATTTACTAATAATCCCCTAAGAAATTACAAAATGCCTTTTCCATTATATGGAAAAAATTGA
CATGTGGCCAAATGGACTATCATGCCCTCACATAATAATTATGAAAATACCCTTCCCTTATAATT
ATTCACTAATAACTCCCTATGAAATTACCAAAATACCATTCTCATTATATGATAAAAAATTAACA
TGTAGCCAATTGAACTATTATGCCTTCATACAATATTACAAAATATCCCTACTCTTATAATTGTT
ACCAAATAATCCTTTAGGAAATTACCAAAATACCATTTCCATTATATGATAAGAAATTTACATAT
GGCAAAATGGACTATTATACCCTCACACAATAATTAGAAAAATAACCCTTCTCTTATAATTATTT
ACAAAATAATCCCATATGAAATTACCAAAATACACTTTCCATTATACCATATACATTAAAAAAAT
CCTAGACAAATAACAAAATTACCCATCACATTATTTGATGAGAAAATGACATGTGACCAAATGTA
CTATTATGTCCAAATATCATAACTACGAAAATACCTATTATCTTGA
Found at i:6258087 original size:130 final size:129
Alignment explanation
Indices: 6257953--6258312 Score: 385
Period size: 128 Copynumber: 2.8 Consensus size: 129
6257943 CGAAATGCCT
* * * * *
6257953 TTTCCATTATATAGGCAA-AAATTGACATGCGACCAAATTGATAGTTTTGTGCTCATAT-CATT-
1 TTTCCATTATAT-GACAAGAAATTGACATGCGACCAAATGGA-A-TATTATGCCCATATACATTA
*
6258015 ATTACT-AAAATACCCATTTTCTTATAATTATTTACTAAATAATGC-CCTATGAAACTACCAAAA
63 ATTA-TGAAAATACCC-TTCTCTTATAATTATTTACTAAATAAT-CTCCTATGAAACTACCAAAA
6258078 TACCA
125 TACCA
* * * * *
6258083 TTTCCATTATATGATAAGCAATTGACATGTGACCAAATGGAATATTATGCCCTTATACCTTAATT
1 TTTCCATTATATGACAAGAAATTGACATGCGACCAAATGGAATATTATGCCCATATACATTAATT
* *
6258148 ATGAAAATACCCTTCTCTTATAATTATTTACTAAATAATCTCCTATGAAATTACCAAAATACCC
66 ATGAAAATACCCTTCTCTTATAATTATTTACTAAATAATCTCCTATGAAACTACCAAAATACCA
* * * * * * * *
6258212 TTT--GTGTATATGATAAGGAATTAACATGTGACCAAATGGACTATTATGCCCTTA-AAATGTAA
1 TTTCCAT-TATATGACAAGAAATTGACATGCGACCAAATGGAATATTATGCCCATATACAT-TAA
* *
6258274 ATATGAAAATACCCTTCTCCTATAATTATTTACTAAATA
64 TTATGAAAATACCCTTCTCTTATAATTATTTACTAAATA
6258313 TTTACCCAAA
Statistics
Matches: 202, Mismatches: 21, Indels: 16
0.85 0.09 0.07
Matches are distributed among these distances:
127 3 0.01
128 96 0.48
129 58 0.29
130 45 0.22
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (129 bp):
TTTCCATTATATGACAAGAAATTGACATGCGACCAAATGGAATATTATGCCCATATACATTAATT
ATGAAAATACCCTTCTCTTATAATTATTTACTAAATAATCTCCTATGAAACTACCAAAATACCA
Found at i:6258279 original size:128 final size:128
Alignment explanation
Indices: 6258021--6258312 Score: 419
Period size: 128 Copynumber: 2.3 Consensus size: 128
6258011 CATTATTACT
*
6258021 AAAATACCCATTTTCTTATAATTATTTACTAAATAATGCCCTATGAAACTACCAAAATACCATTT
1 AAAATACCC-TTCTCTTATAATTATTTACTAAATAATGCCCTATGAAACTACCAAAATACCATTT
* ** *
6258086 CCATTATATGATAAGCAATTGACATGTGACCAAATGGAATATTATGCCCTTATACCTTAATTATG
65 -CATTATATGATAAGCAATTAACATGTGACCAAATGGAATATTATGCCCTTATAAATTAAATATG
* *
6258151 AAAATACCCTTCTCTTATAATTATTTACTAAATAAT-CTCCTATGAAATTACCAAAATACCCTTT
1 AAAATACCCTTCTCTTATAATTATTTACTAAATAATGC-CCTATGAAACTACCAAAATACCATTT
* * *
6258215 -GTGTATATGATAAGGAATTAACATGTGACCAAATGGACTATTATGCCCTTA-AAATGTAAATAT
65 CAT-TATATGATAAGCAATTAACATGTGACCAAATGGAATATTATGCCCTTATAAAT-TAAATAT
6258278 G
128 G
*
6258279 AAAATACCCTTCTCCTATAATTATTTACTAAATA
1 AAAATACCCTTCTCTTATAATTATTTACTAAATA
6258313 TTTACCCAAA
Statistics
Matches: 148, Mismatches: 11, Indels: 8
0.89 0.07 0.05
Matches are distributed among these distances:
127 3 0.02
128 86 0.58
129 50 0.34
130 9 0.06
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (128 bp):
AAAATACCCTTCTCTTATAATTATTTACTAAATAATGCCCTATGAAACTACCAAAATACCATTTC
ATTATATGATAAGCAATTAACATGTGACCAAATGGAATATTATGCCCTTATAAATTAAATATG
Found at i:6259764 original size:182 final size:181
Alignment explanation
Indices: 6259545--6261259 Score: 747
Period size: 180 Copynumber: 9.6 Consensus size: 181
6259535 TTAAATAATC
* * * * *
6259545 ATGACTATTTGAATAATTAGCTATTTCAAATCATTATGATA-TTT-TTTTATAATAAAATATTTG
1 ATGACTATTTGAATAATTATCTATTTCAAAACATTATGACATTTTGTTTTATAATAAAACAATTG
* * *
6259608 TTTCAGTTCATATAAGCTTATTTGAAGTAATATAATATTAATTTATT-AATATTTCAAAAA-AAA
66 TTTCAGTTCATAAAAGCTTATTTGAAATAAAATAATATTAATTTATTAAAT-TTTCAAAAATAAA
* * * * *
6259671 TGAGTAAGAGAATTAAAAAAAAAAGAGTATGTTTAACAAAAAAAGTTTAGATAGTT
130 TAAGTAAAAG-ATTAAAAAAAAAA-A-TATGTTTAAC-AAAAAAGTTCAAAAAGTT
* * * *
6259727 ATGACTATCTGAATAATTATCTATTTCAAAACATTATGACATTTTGTTTTGTCATAAACCAATTG
1 ATGACTATTTGAATAATTATCTATTTCAAAACATTATGACATTTTGTTTTATAATAAAACAATTG
* * *
6259792 TTTCGGTTCATAAAAGCTTTTTTGAAATAAAATAATATTAATTTATTAAATTTTCAAAAATTAAT
66 TTTCAGTTCATAAAAGCTTATTTGAAATAAAATAATATTAATTTATTAAATTTTCAAAAATAAAT
* * * * *
6259857 AAGTAAAAGATTTAAAAAATAAATTTGTTTAACGAATAAGTTCAAAAAGTT
131 AAGTAAAAGATTAAAAAAAAAAATATGTTTAACAAAAAAGTTCAAAAAGTT
* * *** * * *
6259908 ATGACTATTTGAACAATTATTTATTTCAAATTGTTATGAC-TATTTGTTTTGTCATAAAATAATT
1 ATGACTATTTGAATAATTATCTATTTCAAAACATTATGACAT-TTTGTTTTATAATAAAACAATT
* * ** ** * * * * *
6259972 ATTTCTA-TTCATACAATTTTATTCAAAATAAAATAATAGTAATTTATT-AGTATCCTAAAAATT
65 GTTTC-AGTTCATAAAAGCTTATTTGAAATAAAATAATATTAATTTATTAAATTTTC-AAAAATA
*** * * * * * * * *
6260035 AATAAGTTTGAGATTTAAAAAATAAATCTGTTTACCGAACAAG-TCAAATAGTC
128 AATAAGTAAAAGATTAAAAAAAAAAATATGTTTAACAAAAAAGTTCAAAAAGTT
* * * * * * * * **
6260088 ATGTCTATTTGAATTATTATCTATTTCAAATCGTAATAACATTTCGTTTCATCGTAAAACAATTG
1 ATGACTATTTGAATAATTATCTATTTCAAAACATTATGACATTTTGTTTTATAATAAAACAATTG
* * * *
6260153 TTTCTA-TTTATGAAAA-ATTATTT-AGAAT-AAATAATATT-GTTCTA-TAATATTTT----GA
66 TTTC-AGTTCAT-AAAAGCTTATTTGA-AATAAAATAATATTAATT-TATTAA-ATTTTCAAAAA
* * * * ** * *
6260208 TAATTAA-TAAGAGATTTAATAACGAAATATATTT-ACAAAAACAGTTCAAATAG-T
126 TAAATAAGTAAAAGATTAAAAAAAAAAATATGTTTAACAAAAA-AGTTCAAAAAGTT
* * * * * * * * * *
6260262 ATGATTATTTTAAAGAATTATCTATTACAAATCGTTATGACCTTTTGTTTTGTCATAAACCAATT
1 ATGACTA-TTTGAATAATTATCTATTTCAAAACATTATGACATTTTGTTTTATAATAAAACAATT
* * * * *
6260327 GTTTCTA-CTCACAAAAGCTTTTTTGAAATAAAATAATATTAATTTATTAAAATTTCAAAAATTA
65 GTTTC-AGTTCATAAAAGCTTATTTGAAATAAAATAATATTAATTTATTAAATTTTCAAAAATAA
* * * * * * * ** * *
6260391 ATAAGTAAAAGATTTTGAAAAAATATATCTATTTACCGAGTAAGTTCAAATACTT
129 ATAAGTAAAAGA--TTAAAAAAAAAAATATGTTTAACAAAAAAGTTCAAAAAGTT
* * * * * * * * *
6260446 ATGACTATTTCAATAATTATATATTTTAAATCGTTATAATC-TTTTGTTTTGTCCATAAAATAAT
1 ATGACTATTTGAATAATTATCTATTTCAAAACATTATGA-CATTTTGTTTTAT-AATAAAACAAT
* * * ** * * * *
6260510 TATTTCTA-TTCATACAA-TTTATTCAAAATAAAATAATACTAATTTATT-AATATTCTAAAATT
64 TGTTTC-AGTTCATAAAAGCTTATTTGAAATAAAATAATATTAATTTATTAAATTTTCAAAAATA
**** * * * * * * * *
6260572 AATAAGTTTGGGATTTAAAAAATAAATTTGTTTACCGAATAAGTTCAAATAGTC
128 AATAAGTAAAAGATTAAAAAAAAAAATATGTTTAACAAAAAAGTTCAAAAAGTT
* * * * * * * **
6260626 ATGTCCATTTGAACT-ATTATCGATTTCAAATCGTAATGACATTTTATTTTATTGTAAAACAATT
1 ATGACTATTTGAA-TAATTATCTATTTCAAAACATTATGACATTTTGTTTTATAATAAAACAATT
* * * * * *
6260690 ATTTCA-TGC--AAAA--TTATTTAAAATAAAATAATATTGATCTATT-AATATTT----GATAA
65 GTTTCAGTTCATAAAAGCTTATTTGAAATAAAATAATATTAATTTATTAAAT-TTTCAAAAATAA
* * ** * * * * *
6260745 TTAA-TAAAAGATTTAAAAATGAAATTTATTTATCAAAACAGTTCAAATAGTT
129 ATAAGTAAAAGATTAAAAAAAAAAATATGTTTAACAAAAAAGTTCAAAAAGTT
* * * * * * * *
6260797 ATGACTATTTGAACAATTATCTATCTCAAATCTTTATG--ATCTTTGTTTTGTCATCAAATAATT
1 ATGACTATTTGAATAATTATCTATTTCAAAACATTATGACAT-TTTGTTTTATAATAAAACAATT
* ** * * * * * * * * *
6260860 TTTTCTTTTTATACAAGTTTA-TTCATATTAAAATAATACTAATTTAAT-AATATTCCAAAAATT
65 GTTTCAGTTCATAAAAGCTTATTTGA-AATAAAATAATATTAATTTATTAAAT-TTTCAAAAATA
* * * * ** * * * ** *
6260923 AGTAGGTAAGAGATTTAAAAACTAAATGTGTTTATCGAACCAGTTCAAATAGTT
128 AATAAGTAAAAGATTAAAAAAAAAAATATGTTTAACAAAAAAGTTCAAAAAGTT
* * * * * * * * * * *
6260977 AAGACTATTAGAATAATTATCTATTTCAAATCGTTTTAACCTTTTGTTTTGTCATAAAATAATTA
1 ATGACTATTTGAATAATTATCTATTTCAAAACATTATGACATTTTGTTTTATAATAAAACAATTG
* * * * * *
6261042 TTTCAGTCCATACAAGCTTA-TTCAAAGTAAAATAGTACTAATTTATTAACA--TTCAAAAAATT
66 TTTCAGTTCATAAAAGCTTATTTGAAA-TAAAATAATATTAATTTATTAA-ATTTTC-AAAAATA
* * ** * * *
6261104 AATGAGCAAGATATTTTAAAAAAATAAATTTGTTT-ACTAAATAAGTT-AAAATAGATT
128 AATAAGTAA-A-AGATTAAAAAAAAAAATATGTTTAAC-AAAAAAGTTCAAAA-AG-TT
* * *** * * * * *
6261161 -TGACTATTTGAACAATTATTTATTT-AAAGTGTTATGACCTTTTGTTTTGTCATGAAATAATTG
1 ATGACTATTTGAATAATTATCTATTTCAAAACATTATGACATTTTGTTTTATAATAAAACAATTG
* * *
6261224 TTTCAATTCATAAAAACTTATATGAAATAAAATAAT
66 TTTCAGTTCATAAAAGCTTATTTGAAATAAAATAAT
6261260 TCTACTTTAT
Statistics
Matches: 1194, Mismatches: 279, Indels: 120
0.75 0.18 0.08
Matches are distributed among these distances:
169 2 0.00
170 20 0.02
171 67 0.06
172 6 0.01
173 7 0.01
174 34 0.03
175 131 0.11
176 22 0.02
177 5 0.00
178 6 0.01
179 33 0.03
180 236 0.20
181 230 0.19
182 128 0.11
183 143 0.12
184 111 0.09
185 13 0.01
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.41
Consensus pattern (181 bp):
ATGACTATTTGAATAATTATCTATTTCAAAACATTATGACATTTTGTTTTATAATAAAACAATTG
TTTCAGTTCATAAAAGCTTATTTGAAATAAAATAATATTAATTTATTAAATTTTCAAAAATAAAT
AAGTAAAAGATTAAAAAAAAAAATATGTTTAACAAAAAAGTTCAAAAAGTT
Found at i:6260142 original size:21 final size:19
Alignment explanation
Indices: 6260117--6260156 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
6260107 TCTATTTCAA
*
6260117 ATCGTAATAACATTTCGTTTC
1 ATCGTAA-AACAATT-GTTTC
6260138 ATCGTAAAACAATTGTTTC
1 ATCGTAAAACAATTGTTTC
6260157 TATTTATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 6 0.33
21 7 0.39
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (19 bp):
ATCGTAAAACAATTGTTTC
Found at i:6260398 original size:536 final size:534
Alignment explanation
Indices: 6259379--6262644 Score: 2317
Period size: 536 Copynumber: 6.1 Consensus size: 534
6259369 NNNNNNNNNN
* * * * * * *
6259379 AATTATTTATTTCAACTTGTTATGACTTTTTGTTTTATCATAAAATAATTATTTATATTCATATA
1 AATTATCTATTTCAAATCGTTATAAC-TTTTGTTTTGTCATAAAATAATTATTTCTATTCATACA
* * * * * * * * *** *
6259444 AGTTTATTCATATTAAAATAAAATTAATTTA-AAATACTT-TGACAATTAATAAATCAAATATTT
65 AGTTTATTCAAAATAAAATAATACTAATTTATTAATA-TTCTAAAAATTAATAAGTTTGAGATTT
* ** * * * * *
6259507 AAAAAATAAATATAATTATCGAACAGGTTTAAATAATCATGACTATTTGAATAATTAGCTATTTC
129 AAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTCATGACTATTTGAATAATTATCTATTTC
* * * * * * * * ** *
6259572 AAATCATTATGATA-TTT-TTTTATAATAAAATATTTGTTTC-AGTTCATATAAGCTTATTTGAA
194 AAATCGTAATAACATTTTGTTTTATCATAAAACAATTGTTTCTA-TTTATA-AAAATTATTTAAA
* * * ** * * * **
6259634 GTAATATAATATTAATT-TATTAATATTTCAAAAAAAATGAGTAAGAGAATTAAAAAAAAAAGAG
257 ATAAAATAATATT-GTTCTATTAATATTT---TGAAAATTAATAAGAG-ATTTAAAAACGAA-A-
* * * * * * * * * * *
6259698 TATGTTTAACAAAAAAAGTTTAGATAGTTATGACTATCTGAATAATTATCTATTTCAAAACATTA
315 T-TATTTATC-AAAACAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTACAAATCGTTA
* *
6259763 TGACATTTTGTTTTGTCATAAACCAATTGTTTCGGT-TCATAAAAGCTTTTTTGAAATAAAATAA
378 TGACCTTTTGTTTTGTCATAAAACAATTGTTTC--TATCATAAAAGCTTTTTTGAAATAAAATAA
* *
6259827 TATTAATTTATTAA-ATTTTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTAACG
441 TACTAATTTATTAATA-TTTCAAAAATTAATAAGT-AAAGATTTAAAAAATAAATTTGTTTATCG
* * *
6259891 AATAAGTTCAAAAAGTTATGACTATTTGAAC
504 AACAAGTTCAAATAGTTATGACTATTTGAAT
* * *
6259922 AATTATTTATTTCAAATTGTTATGACTATTTGTTTTGTCATAAAATAATTATTTCTATTCATACA
1 AATTATCTATTTCAAATCGTTATAACT-TTTGTTTTGTCATAAAATAATTATTTCTATTCATACA
* * * *
6259987 ATTTTATTCAAAATAAAATAATAGTAATTTATTAGTATCCTAAAAATTAATAAGTTTGAGATTTA
65 AGTTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTTTGAGATTTA
* *
6260052 AAAAATAAATCTGTTTACCGAACAAG-TCAAATAGTCATGTCTATTTGAATTATTATCTATTTCA
130 AAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTCATGACTATTTGAATAATTATCTATTTCA
* * * *
6260116 AATCGTAATAACATTTCGTTTCATCGTAAAACAATTGTTTCTATTTATGAAAAATTATTTAGAAT
195 AATCGTAATAACATTTTGTTTTATCATAAAACAATTGTTTCTATTTAT-AAAAATTATTTAAAAT
* *
6260181 -AAATAATATTGTTCTA-TAATATTTTGATAATTAATAAGAGATTTAATAACGAAATATATTTA-
259 AAAATAATATTGTTCTATTAATATTTTGAAAATTAATAAGAGATTTAAAAACGAAAT-TATTTAT
* *
6260243 CAAAAACAGTTCAAATAG-TATGATTATTTTAAAGAATTATCTATTACAAATCGTTATGACCTTT
323 C-AAAACAGTTCAAATAGTTATGACTA-TTTAAACAATTATCTATTACAAATCGTTATGACCTTT
* * *
6260307 TGTTTTGTCATAAACCAATTGTTTCTACTCACAAAAGCTTTTTTGAAATAAAATAATATTAATTT
386 TGTTTTGTCATAAAACAATTGTTTCTA-TCATAAAAGCTTTTTTGAAATAAAATAATACTAATTT
* * * * * **
6260372 ATTAAAATTTCAAAAATTAATAAGTAAAAGATTTTGAAAAAATATATCTATTTACCGAGTAAGTT
450 ATTAATATTTCAAAAATTAATAAGT-AAAGA-TTT-AAAAAATAAATTTGTTTATCGAACAAGTT
* *
6260437 CAAATACTTATGACTATTTCAAT
512 CAAATAGTTATGACTATTTGAAT
* *
6260460 AATTATATATTTTAAATCGTTATAATCTTTTGTTTTGTCCATAAAATAATTATTTCTATTCATAC
1 AATTATCTATTTCAAATCGTTATAA-CTTTTGTTTTGT-CATAAAATAATTATTTCTATTCATAC
*
6260525 AA-TTTATTCAAAATAAAATAATACTAATTTATTAATATTCT-AAAATTAATAAGTTTGGGATTT
64 AAGTTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTTTGAGATTT
* * * * *
6260588 AAAAAATAAATTTGTTTACCGAATAAGTTCAAATAGTCATGTCCATTTGAACT-ATTATCGATTT
129 AAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTCATGACTATTTGAA-TAATTATCTATTT
* * ** * **
6260652 CAAATCGTAATGACATTTTATTTTATTGTAAAACAATTATTTC-A--T-GCAAAATTATTTAAAA
193 CAAATCGTAATAACATTTTGTTTTATCATAAAACAATTGTTTCTATTTATAAAAATTATTTAAAA
* * * *
6260713 TAAAATAATATTGATCTATTAATA-TTTGATAATTAATAAAAGATTTAAAAATGAAATTTATTTA
258 TAAAATAATATTGTTCTATTAATATTTTGAAAATTAATAAGAGATTTAAAAACGAAA-TTATTTA
* * *
6260777 TCAAAACAGTTCAAATAGTTATGACTATTTGAACAATTATCTATCT-CAAATCTTTATGATC-TT
322 TCAAAACAGTTCAAATAGTTATGACTATTTAAACAATTATCTAT-TACAAATCGTTATGACCTTT
* * * * * * * * *
6260840 TGTTTTGTCATCAAATAATTTTTTCTTTTTATACAAG-TTTATTCATATTAAAATAATACTAATT
386 TGTTTTGTCATAAAACAATTGTTTC-TATCATAAAAGCTTTTTTGA-AATAAAATAATACTAATT
* * * * * * *
6260904 TAATAATATTCCAAAAATTAGTAGGTAAGAGATTTAAAAACTAAATGTGTTTATCGAACCAGTTC
449 TATTAATATTTCAAAAATTAATAAGTAA-AGATTTAAAAAATAAATTTGTTTATCGAACAAGTTC
* *
6260969 AAATAGTTAAGACTATTAGAAT
513 AAATAGTTATGACTATTTGAAT
* *
6260991 AATTATCTATTTCAAATCGTTTTAACCTTTTGTTTTGTCATAAAATAATTATTTC-AGTCCATAC
1 AATTATCTATTTCAAATCGTTATAA-CTTTTGTTTTGTCATAAAATAATTATTTCTA-TTCATAC
* * * * * * *** *
6261055 AAGCTTATTCAAAGTAAAATAGTACTAATTTATTAACATTCAAAAAATTAATGAGCAAGATATTT
64 AAGTTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTTTGAGA-TT
* ** * * * * *
6261120 TAAAAAAATAAATTTGTTTACTAAATAAGTTAAAATAGAT-TTGACTATTTGAACAATTATTTAT
128 T-AAAAAATAAATCTGTTTACCGAACAAGTTCAAATAG-TCATGACTATTTGAATAATTATCTAT
* * * * * * * * *
6261184 TT-AAAGT-GTTATGACCTTTTGTTTTGTCATGAAATAATTGTTTCAATTCATAAAAACTTATAT
191 TTCAAA-TCGTAATAACATTTTGTTTTATCATAAAACAATTGTTTCTATTTATAAAAA-TTATTT
* ** *
6261247 GAAATAAAAT-A-A---TTCTACTT--TATTTCAAAAATTAATAAGCAAGAGATTTAAAAACTAA
254 AAAATAAAATAATATTGTTCTA-TTAATATTTTGAAAATTAAT----AAGAGATTTAAAAACGAA
* * * * * * * *
6261305 AGTTGTTTTTTCAAACCACTTCAAATAGTTATGACTATTTGAACAAATATC-AATATCAAATAGT
314 A-TT-ATTTATCAAAACAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTA-CAAATCGT
* * * * * * *
6261369 TATGATC-TTTCTTTTCTCATAAAACAATTGTTTTTTATCAT-CAAGCTTATTTG-GATAAAAAT
376 TATGACCTTTTGTTTTGTCATAAAACAATTG-TTTCTATCATAAAAGCTTTTTTGAAAT-AAAAT
* * * * *
6261431 AATACTAATTGAATAATA-TTCTAAAAATTAATAAG---AGATTTAGAAAATAAA-TGGTTTGTC
439 AATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAAGATTTAAAAAATAAATTTGTTTATC
* * * * *
6261491 GAACCAA-TTTAAATAGTTAAGATTATTAGAGT
503 GAA-CAAGTTCAAATAGTTATGACTATTTGAAT
* * * * * * *
6261523 AATTATCTATTTTAAATCATTTTAACTTTTATTTAGTCATATAATAATTATTTC-AGTTCGTACA
1 AATTATCTATTTCAAATCGTTATAACTTTTGTTTTGTCATAAAATAATTATTTCTA-TTCATAC-
*** * * * ***
6261587 AAG-TTATTTGGAATAAAATAATACTAATTTATTGACATTCAAAAAATTAATAAACATGAGATTT
64 AAGTTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTTTGAGATTT
* * * * *
6261651 GAGAAAATAAATCTGTTTACAGAACAAGTTCAAATAGTTATAACTATTT-CATCAATTAT-TGAT
129 -AAAAAATAAATCTGTTTACCGAACAAGTTCAAATAGTCATGACTATTTGAAT-AATTATCT-AT
* * * * * * *
6261714 TTAAAATCCTTATGACCA-TTTGTTTTGTCATAAAATAATTGTTT-TATTTTATAAAAGCTTA-T
191 TTCAAATCGTAAT-AACATTTTGTTTTATCATAAAACAATTGTTTCTA-TTTATAAAA-ATTATT
* ** * **
6261776 CAAAACTAAAATAATACTACTT-TATTAATATTTTCAAAATTAATAAGCAAAAGATTTAAAAAAT
253 TAAAA-TAAAATAATA-TTGTTCTATTAATATTTTGAAAATTAATAAG----AGATTTAAAAACG
* * * * * * * ** *
6261840 AAATTAATTTATCCAATCAGTTCAAATAATCATAACCATTTAAACAACTATCTATTTTAAATTGT
312 AAATT-ATTTATCAAAACAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTACAAATCGT
* * * * * **
6261905 TATTACCTTTTGTTTTGTCATAAAACAATTATTTTTTAGCATACAAGCTTTTTCAAAATAAAATA
376 TATGACCTTTTGTTTTGTCATAAAACAATT-GTTTCTATCATAAAAGCTTTTTTGAAATAAAATA
* * * * *
6261970 ATACTACTTTATTAATATTTTAAGAATTAATAAG---AGATTT-AAAAA-AAA-TTATTT-GCTG
440 ATACTAATTTATTAATATTTCAAAAATTAATAAGTAAAGATTTAAAAAATAAATTTGTTTATC-G
* * *
6262028 AACCAGTTCAAATAGTTATAACTATTTGAAC
504 AACAAGTTCAAATAGTTATGACTATTTGAAT
* * * * *
6262059 AATTATCTATTTCAAATTGTTATAACCTTTGTTCTATCATAAAATAATTATTTCTATTCATATAA
1 AATTATCTATTTCAAATCGTTATAACTTTTGTTTTGTCATAAAATAATTATTTCTATTCATACAA
* * *
6262124 GTTTATTCAAAATAAAATAATAATAATTTAGTAATATTCTGAAAATTAATAA-TTATGAGATTTA
66 GTTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTT-TGAGATTTA
* * * * * * *
6262188 AAAAATAAAT-TCGTTTACCGAACTAGTTCAAACAATTAAGACTATATGAATAATTATTTATTTC
130 AAAAATAAATCT-GTTTACCGAACAAGTTCAAATAGTCATGACTATTTGAATAATTATCTATTTC
** * * * * * * ** *** *
6262252 AAATATTTATAACTTTTTGTTTTGTCATAAAACAATTATTTCAACTTATACAAGCTTATTCGGAT
194 AAATCGTAATAACATTTTGTTTTATCATAAAACAATTGTTTCTATTTATA-AAAATTATTTAAAA
* * * ** *
6262317 TAGAATAAAATTAATT-TATTAATA-TTTGAAAATTTTATAAGTAAGAGA-TTAAGAAAATAATT
258 TAAAATAATATT-GTTCTATTAATATTTTGAAAA---T-TAA-TAAGAGATTTAA-AAACGAAAT
* * * * *
6262379 CTATTTA-CAAAACCGGTTCAAATAATTATAACTATTT--GC-ATAATC-ATT----A---TTAT
316 -TATTTATCAAAA-CAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTACAAATCGTTAT
* * * * * * * * *
6262432 ---TTTTTGTTTTATCATAAAATAATTATTTTTGTTAATATAAG-TTTATTCGAAATAAAATAAT
379 GACCTTTTGTTTTGTCATAAAACAATTGTTTCT-ATCATAAAAGCTTT-TTTGAAATAAAATAAT
* * * ** * *
6262493 ATTAATTTATTAATATTTGAAAAATTAATCAA-TAAGAGATTTAAAAAGTAAATCTACTTGA-CA
442 ACTAATTTATTAATATTTCAAAAATTAAT-AAGTAA-AGATTTAAAAAATAAAT-TTGTTTATCG
*
6262556 AACCAA-TTCAAATAGTTTTGACTATTTGAAT
504 AA-CAAGTTCAAATAGTTATGACTATTTGAAT
** * * *
6262587 AATTATCTATTTCAAATTATTATAACTTTTTATTTTGTCATCAAATAATTAGTTCTAT
1 AATTATCTATTTCAAATCGTTATAAC-TTTTGTTTTGTCATAAAATAATTATTTCTAT
6262645 CTATACTCTA
Statistics
Matches: 2215, Mismatches: 391, Indels: 248
0.78 0.14 0.09
Matches are distributed among these distances:
520 8 0.00
521 67 0.03
522 2 0.00
524 4 0.00
525 6 0.00
526 4 0.00
527 4 0.00
528 49 0.02
529 35 0.02
530 81 0.04
531 241 0.11
532 89 0.04
533 152 0.07
534 170 0.08
535 176 0.08
536 326 0.15
537 187 0.08
538 324 0.15
539 51 0.02
540 11 0.00
542 1 0.00
543 138 0.06
544 55 0.02
545 32 0.01
546 2 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (534 bp):
AATTATCTATTTCAAATCGTTATAACTTTTGTTTTGTCATAAAATAATTATTTCTATTCATACAA
GTTTATTCAAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGTTTGAGATTTAA
AAAATAAATCTGTTTACCGAACAAGTTCAAATAGTCATGACTATTTGAATAATTATCTATTTCAA
ATCGTAATAACATTTTGTTTTATCATAAAACAATTGTTTCTATTTATAAAAATTATTTAAAATAA
AATAATATTGTTCTATTAATATTTTGAAAATTAATAAGAGATTTAAAAACGAAATTATTTATCAA
AACAGTTCAAATAGTTATGACTATTTAAACAATTATCTATTACAAATCGTTATGACCTTTTGTTT
TGTCATAAAACAATTGTTTCTATCATAAAAGCTTTTTTGAAATAAAATAATACTAATTTATTAAT
ATTTCAAAAATTAATAAGTAAAGATTTAAAAAATAAATTTGTTTATCGAACAAGTTCAAATAGTT
ATGACTATTTGAAT
Found at i:6262349 original size:180 final size:178
Alignment explanation
Indices: 6259379--6263062 Score: 2063
Period size: 181 Copynumber: 20.6 Consensus size: 178
6259369 NNNNNNNNNN
* * * * * *
6259379 AATTATTTATTTCAACT-TGTTATGACTTTTTGTTTTATCATAAAATAATTATTTATATTCATAT
1 AATTATCTATTTCAAATCT-TTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTATT-ATAC
* * * * * * * * * *
6259443 AAGTTTATTCATATTAAAATAAAATTAATTTA-AAATACTTTGACAATTAATAAATCAA-ATATT
64 AAGCTTATTCAAAATAAAATAATACTAATTTATTAATA-TTTAAAAATTAATAAGT-AAGAGATT
** * * * *
6259506 TAAAAAATAAATATAATTATCGAAC-AGGTTTAAATAATCATGACTATTTGAAT
127 TAAAAAATAAAT-TGTTTACCGAACTA-GTTCAAATAGTTATGACTATTTGAAT
* * * * * *
6259559 AATTAGCTATTTCAAATCATTATGA--TATTT-TTTTATAATAAAATATTTGTTTC-AGTTCATA
1 AATTATCTATTTCAAATCTTTATGACCT-TTTGTTTTGTCATAAAATAATTATTTCTA-TT-ATA
* ** * * * * *
6259620 TAAGCTTATTTGAAGTAATATAATATTAATTTATTAATATTTCAAAAA-AAATGAGTAAGAGAAT
63 CAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT-AAAAATTAATAAGTAAGAG-AT
* * ** ** * * *
6259684 TAAAAAAAAAAGAGTATGTTTAACAAAAAAAGTTTAGATAGTTATGACTATCTGAAT
126 TTAAAAAATAA-A-T-TGTTT-ACCGAACTAGTTCAAATAGTTATGACTATTTGAAT
* * * ** * ** *
6259741 AATTATCTATTTCAAAACATTATGACATTTTGTTTTGTCATAAACCAATTGTTTCGGTTCATAAA
1 AATTATCTATTTCAAATCTTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTATT-ATACA
* ** * *
6259806 AGCTTTTTTGAAATAAAATAATATTAATTTATTAA-ATTTTCAAAAATTAATAAGTAAAAGATTT
65 AGCTTATTCAAAATAAAATAATACTAATTTATTAATA-TTT-AAAAATTAATAAGTAAGAGATTT
* * *
6259870 AAAAAATAAATTTGTTTAACGAA-TAAGTTCAAAAAGTTATGACTATTTGAAC
128 AAAAAATAAA-TTGTTTACCGAACT-AGTTCAAATAGTTATGACTATTTGAAT
*
6259922 AATTATTTATTTCAAAT-TGTTATGA-CTATTTGTTTTGTCATAAAATAATTATTTCTATTCATA
1 AATTATCTATTTCAAATCT-TTATGACCT-TTTGTTTTGTCATAAAATAATTATTTCTATT-ATA
** * * * **
6259985 CAATTTTATTCAAAATAAAATAATAGTAATTTATTAGTATCCTAAAAATTAATAAGTTTGAGATT
63 CAAGCTTATTCAAAATAAAATAATACTAATTTATTAATAT-TTAAAAATTAATAAGTAAGAGATT
* * *
6260050 TAAAAAATAAATCTGTTTACCGAACAAG-TCAAATAGTCATGTCTATTTGAAT
127 TAAAAAATAAAT-TGTTTACCGAACTAGTTCAAATAGTTATGACTATTTGAAT
* * * * * * ** * * *
6260102 TATTATCTATTTCAAATCGTAATAACATTTCGTTTCATCGTAAAACAATTGTTTCTATTTATGA-
1 AATTATCTATTTCAAATCTTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTA-TTAT-AC
** * * ** **
6260166 AAAATTATTTAGAAT-AAATAATA-TTGTTCTA-TAATATTT--TGA-TAATTAA-TAAGAGATT
64 AAGCTTATTCAAAATAAAATAATACTAATT-TATTAATATTTAAAAATTAA-TAAGTAAGAGATT
* ** * ** * * *
6260224 TAATAACGAAATATATTTACAAAAAC-AGTTCAAATAG-TATGATTATTTTAAAG
127 TAAAAAATAAAT-TGTTTAC-CGAACTAGTTCAAATAGTTATGACTA-TTTGAAT
* * ** * * * *
6260277 AATTATCTATTACAAATCGTTATGACCTTTTGTTTTGTCATAAACCAATTGTTTCTACTCACAAA
1 AATTATCTATTTCAAATCTTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTA-TTATACA
* ** * * *
6260342 AGCTTTTTTGAAATAAAATAATATTAATTTATTAAAATTTCAAAAATTAATAAGTAAAAGATTTT
65 AGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT-AAAAATTAATAAGTAAGAGA-TTT
* * * * *
6260407 GAAAAAATATATCTATTTACCG-AGTAAGTTCAAATACTTATGACTATTTCAAT
128 -AAAAAATAAAT-TGTTTACCGAACT-AGTTCAAATAGTTATGACTATTTGAAT
* * * * *
6260460 AATTATATATTTTAAATCGTTATAATCTTTTGTTTTGTCCATAAAATAATTATTTCTATTCATAC
1 AATTATCTATTTCAAATCTTTATGACCTTTTGTTTTGT-CATAAAATAATTATTTCTATT-ATAC
* ** *
6260525 AA-TTTATTCAAAATAAAATAATACTAATTTATTAATATTCT-AAAATTAATAAGTTTGGGATTT
64 AAGCTTATTCAAAATAAAATAATACTAATTTATTAATATT-TAAAAATTAATAAGTAAGAGATTT
* * *
6260588 AAAAAATAAATTTGTTTACCGAA-TAAGTTCAAATAGTCATGTCCATTTGAACT
128 AAAAAATAAA-TTGTTTACCGAACT-AGTTCAAATAGTTATGACTATTTGAA-T
* * * * * * ** * *
6260641 -ATTATCGATTTCAAATCGTAATGACATTTTATTTTATTGTAAAACAATTATTTC-ATGCA-A-A
1 AATTATCTATTTCAAATCTTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTAT-TATACA
* * * * * *
6260702 A--TTATTTAAAATAAAATAATATTGATCTATTAATATTTGATAATTAAT-A--AA-AGATTT-A
65 AGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTAAAAATTAATAAGTAAGAGATTTAA
* ** *
6260760 AAAATGAAATTTATTTATCAAAAC-AGTTCAAATAGTTATGACTATTTGAAC
130 AAAAT-AAA-TTGTTTA-CCGAACTAGTTCAAATAGTTATGACTATTTGAAT
* * * * *
6260811 AATTATCTATCTCAAATCTTTATGATC-TTTGTTTTGTCATCAAATAATTTTTTCTTTTTATACA
1 AATTATCTATTTCAAATCTTTATGACCTTTTGTTTTGTCATAAAATAATTATTTC-TATTATACA
* * * * * * *
6260875 AGTTTATTCATATTAAAATAATACTAATTTAATAATATTCCAAAAATTAGTAGGTAAGAGATTTA
65 AGCTTATTCAAAATAAAATAATACTAATTTATTAATATT-TAAAAATTAATAAGTAAGAGATTTA
* * * * *
6260940 AAAACTAAATGTGTTTATCGAACCAGTTCAAATAGTTAAGACTATTAGAAT
129 AAAAATAAAT-TGTTTACCGAACTAGTTCAAATAGTTATGACTATTTGAAT
* *
6260991 AATTATCTATTTCAAATCGTTT-TAACCTTTTGTTTTGTCATAAAATAATTATTTC-AGTCCATA
1 AATTATCTATTTCAAATC-TTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTA-T-TATA
* * * * * * *
6261054 CAAGCTTATTCAAAGTAAAATAGTACTAATTTATTAACATTCAAAAAATTAATGAGCAAGATATT
63 CAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATT-TAAAAATTAATAAGTAAGAGA-T
* * * *
6261119 TTAAAAAAATAAATTTGTTTA-CTAAATAAGTTAAAATAGATT-TGACTATTTGAAC
126 TT-AAAAAATAAA-TTGTTTACCGAACT-AGTTCAAATAG-TTATGACTATTTGAAT
* * * * * *
6261174 AATTATTTATTT-AAAGT-GTTATGACCTTTTGTTTTGTCATGAAATAATTGTTTCAATTCATAA
1 AATTATCTATTTCAAA-TCTTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTATT-ATAC
* * * * * *
6261237 AAACTTATAT-GAAATAAAATAATTCT-A-CT-TT-AT-TTCAAAAATTAATAAGCAAGAGATTT
64 AAGCTTAT-TCAAAATAAAATAATACTAATTTATTAATATTTAAAAATTAATAAGTAAGAGATTT
* ** * * * *
6261296 AAAAACTAAAGTTGTTTTTTCAAACCACTTCAAATAGTTATGACTATTTGAAC
128 AAAAAATAAA-TTG-TTTACCGAACTAGTTCAAATAGTTATGACTATTTGAAT
* * * ** * * * * *
6261349 AAATATCAATATCAAATAGTTATGATC-TTTCTTTTCTCATAAAACAATTGTTT-T-TTATCATC
1 AATTATCTATTTCAAATCTTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTATTAT-A-C
*** * *
6261411 AAGCTTATT-TGGATAAAAATAATACTAATTGAATAATATTCTAAAAA-T--TAA-TAAGAGATT
64 AAGCTTATTCAAAAT-AAAATAATACTAATTTATTAATATT-TAAAAATTAATAAGTAAGAGATT
* * ** * * * * * * *
6261471 TAGAAAATAAATGGTTTGTCGAACCAATTTAAATAGTTAAGATTATTAGAGT
127 TAAAAAATAAATTGTTTACCGAACTAGTTCAAATAGTTATGACTATTTGAAT
* * * * * *
6261523 AATTATCTATTTTAAATCATTT-T-AACTTTTATTTAGTCATATAATAATTATTTC-AGTTCGTA
1 AATTATCTATTTCAAATC-TTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTA-TT-ATA
*** * * * ** *
6261585 CAAAG-TTATTTGGAATAAAATAATACTAATTTATTGACATTCAAAAAATTAATAAACATGAGAT
63 C-AAGCTTATTCAAAATAAAATAATACTAATTTATTAATATT-TAAAAATTAATAAGTAAGAGAT
* * * * *
6261649 TTGAGAAAATAAATCTGTTTACAGAACAAGTTCAAATAGTTATAACTATTT-CAT
126 TT-AAAAAATAAAT-TGTTTACCGAACTAGTTCAAATAGTTATGACTATTTGAAT
* * * *
6261703 CAATTAT-TGATTTAAAATCCTTATGACCATTTGTTTTGTCATAAAATAATTGTTT-TATTTTAT
1 -AATTATCT-ATTTCAAATCTTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTA--TTAT
* * * * *
6261766 AAAAGCTTA-TCAAAACTAAAATAATACTACTTTATTAATATTTTCAAAATTAATAAGCAAAAGA
62 ACAAGCTTATTCAAAA-TAAAATAATACTAATTTATTAATA-TTTAAAAATTAATAAGTAAGAGA
* * * * * * *
6261830 TTTAAAAAATAAATTAATTTATCC-AA-TCAGTTCAAATAATCATAACCATTTAAAC
125 TTTAAAAAATAAATT-GTTTA-CCGAACT-AGTTCAAATAGTTATGACTATTTGAAT
* * * * * **
6261885 AACTATCTATTTTAAAT-TGTTATTACCTTTTGTTTTGTCATAAAACAATTATTTTTTAGCATAC
1 AATTATCTATTTCAAATCT-TTATGACCTTTTGTTTTGTCATAAAATAATTA-TTTCTATTATAC
* * *
6261949 AAGCTTTTTCAAAATAAAATAATACTACTTTATTAATATTTTAAGAA-T--TAA-TAAGAGATTT
64 AAGCTTATTCAAAATAAAATAATACTAATTTATTAATA-TTTAAAAATTAATAAGTAAGAGATTT
* * * * * *
6262010 -AAAAA-AAATTATTTGCTGAACCAGTTCAAATAGTTATAACTATTTGAAC
128 AAAAAATAAATTGTTTACCGAACTAGTTCAAATAGTTATGACTATTTGAAT
* * * *
6262059 AATTATCTATTTCAAAT-TGTTATAACC-TTTGTTCTATCATAAAATAATTATTTCTATTCATAT
1 AATTATCTATTTCAAATCT-TTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTATT-ATAC
* * * * * *
6262122 AAGTTTATTCAAAATAAAATAATAATAATTTAGTAATATTCTGAAAATTAATAATTATGAGATTT
64 AAGCTTATTCAAAATAAAATAATACTAATTTATTAATATT-TAAAAATTAATAAGTAAGAGATTT
* * * *
6262187 AAAAAATAAATTCGTTTACCGAACTAGTTCAAACAATTAAGACTATATGAAT
128 AAAAAATAAATT-GTTTACCGAACTAGTTCAAATAGTTATGACTATTTGAAT
* * * * * *
6262239 AATTATTTATTTCAAATATTTATAACTTTTTGTTTTGTCATAAAACAATTATTTCAACTTATACA
1 AATTATCTATTTCAAATCTTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTA-TTATACA
** * * * * * *
6262304 AGCTTATTCGGATTAGAATAAAATTAATTTATTAATATTTGAAAATTTTATAAGTAAGAGA-TTA
65 AGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT-AAAAATTAATAAGTAAGAGATTTA
* * ** ** * * *
6262368 AGAAAATAATTCTATTTACAAAACCGGTTCAAATAATTATAACTATTTGCAT
129 A-AAAATAAAT-TGTTTACCGAACTAGTTCAAATAGTTATGACTATTTGAAT
* * * * *
6262420 -A--ATC-A-TT---A---TTAT---TTTTTGTTTTATCATAAAATAATTATTTTTGTTAATATA
1 AATTATCTATTTCAAATCTTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTATT-ATACA
* * *
6262471 AGTTTATTCGAAATAAAATAATATTAATTTATTAATATTTGAAAAATTAATCAA-TAAGAGATTT
65 AGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT-AAAAATTAAT-AAGTAAGAGATTT
* * * * * * *
6262535 AAAAAGTAAATCTACTTGA-CAAACCAATTCAAATAGTTTTGACTATTTGAAT
128 AAAAAATAAAT-T-GTTTACCGAACTAGTTCAAATAGTTATGACTATTTGAAT
* * * * *
6262587 AATTATCTATTTCAAAT-TATTATAACTTTTTATTTTGTCATCAAATAATTAGTTCTATCTATAC
1 AATTATCTATTTCAAATCT-TTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTAT-TATAC
**** * ** * * * * * * * * ** * * *
6262651 TCTATTGTTTGAAATAAAACAATGCAAATTTAATAATGTTCTAATACTTGATAACCAAACAAAAT
64 AAGCTTATTCAAAATAAAATAATACTAATTTATTAATATT-TAAAAATTAATAA-GTAAGAGATT
* * * * *
6262716 TAAAAAATAAA-TGTAATTACCAAACCTA-TTCAAATATTTAAGATTATATGAAT
127 TAAAAAATAAATTGT--TTACCGAA-CTAGTTCAAATAGTTATGACTATTTGAAT
* * * * * *
6262769 GATTATTTATTTCAAATCATTATAACTTTTTCTTTTGTCATAAAATAATTATTT-TATTCATACA
1 AATTATCTATTTCAAATCTTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTATT-ATACA
* * * *
6262833 AGCTTATTTC-GATTAAAATAATACTAATTTCA-TAATATTTTAAAATCTAATAAGTAAGATATT
65 AGCTTA-TTCAAAATAAAATAATACTAATTT-ATTAATATTTAAAAAT-TAATAAGTAAGAGATT
* * * * ** *
6262896 TAAAAAATAAATTTATTTATCGAA-TCATTTCAAATGGTTAAAACTATTAGAAT
127 TAAAAAATAAA-TTGTTTACCGAACT-AGTTCAAATAGTTATGACTATTTGAAT
* * * * ** * *
6262949 AATTATATACTTT-AAATCATTCTGACATTTTGTTTAATCATAAAATAATTGTTT-TAATTCAAA
1 AATTATCTA-TTTCAAATCTTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCT-ATT-ATA
* * *
6263012 CAAGTTTATTCAAAATAAATTAATACTAATTAATTAATATTTCAAAAATTA
63 CAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT-AAAAATTA
6263063 TTTCAAACTT
Statistics
Matches: 2718, Mismatches: 596, Indels: 379
0.74 0.16 0.10
Matches are distributed among these distances:
166 2 0.00
167 116 0.04
168 10 0.00
170 33 0.01
171 60 0.02
172 16 0.01
173 72 0.03
174 183 0.07
175 251 0.09
176 88 0.03
177 40 0.01
178 93 0.03
179 71 0.03
180 405 0.15
181 683 0.25
182 318 0.12
183 158 0.06
184 109 0.04
185 10 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (178 bp):
AATTATCTATTTCAAATCTTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTATTATACAA
GCTTATTCAAAATAAAATAATACTAATTTATTAATATTTAAAAATTAATAAGTAAGAGATTTAAA
AAATAAATTGTTTACCGAACTAGTTCAAATAGTTATGACTATTTGAAT
Found at i:6262568 original size:167 final size:167
Alignment explanation
Indices: 6262265--6262589 Score: 388
Period size: 167 Copynumber: 1.9 Consensus size: 167
6262255 TATTTATAAC
* * * *
6262265 TTTTTGTTTTGTCATAAAACAATTATTTCAACTTATACAAGCTTATTCGGATTAGAATAAAATTA
1 TTTTTGTTTTATCATAAAACAATTATTTCAACTTATACAAGCTTATTCGAAATAAAATAAAATTA
* * * * **
6262330 ATTTATTAATATTTGAAAATTTTATAAGTAAGAGATTAAGAAAATAATTCTATTTACAAAACCGG
66 ATTTATTAATATTTGAAAAATTAATAAGTAAGAGATTAAGAAAATAAATCTATTGACAAAACCAA
*
6262395 TTCAAATAATTATAACTATTTGCATAATCATTATTAT
131 TTCAAATAATTATAACTATTTGAATAATCATTATTAT
* *** * * *
6262432 TTTTTGTTTTATCATAAAATAATTATTT-TTGTTAATATAAGTTTATTCGAAATAAAATAATATT
1 TTTTTGTTTTATCATAAAACAATTATTTCAACTT-ATACAAGCTTATTCGAAATAAAATAAAATT
*
6262496 AATTTATTAATATTTGAAAAATTAATCAA-TAAGAGATTTAA-AAAGTAAATCTACTTGAC-AAA
65 AATTTATTAATATTTGAAAAATTAAT-AAGTAAGAGA-TTAAGAAAATAAATCTA-TTGACAAAA
* * *
6262558 CCAATTCAAATAGTTTTGACTATTTGAATAAT
127 CCAATTCAAATAATTATAACTATTTGAATAAT
6262590 TATCTATTTC
Statistics
Matches: 132, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
166 2 0.02
167 120 0.91
168 10 0.08
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (167 bp):
TTTTTGTTTTATCATAAAACAATTATTTCAACTTATACAAGCTTATTCGAAATAAAATAAAATTA
ATTTATTAATATTTGAAAAATTAATAAGTAAGAGATTAAGAAAATAAATCTATTGACAAAACCAA
TTCAAATAATTATAACTATTTGAATAATCATTATTAT
Found at i:6277598 original size:522 final size:522
Alignment explanation
Indices: 6276593--6277599 Score: 1215
Period size: 522 Copynumber: 1.9 Consensus size: 522
6276583 TTAAAGACTG
* * * *
6276593 AAAACTTTGTATTAAGGGTGAAATGATCTTTTCATGTGATCTAAGAATTTTGAAAAGTACATATT
1 AAAACTTTGTATTAAGGGTAAAATAATCTTTTCATGTGATCTAAGAACTTTCAAAAGTACATATT
* *
6276658 TGACAGTAAACAATCTAGACCATTGGGTCACATTGGAAATTTGATCCAAGGGTGAAAGTTTGATC
66 TGACAGTAAACAATCTAGACCATTGGATCACATTGGAAATTTGATCCAAAGGTGAAAGTTTGATC
* * * * *
6276723 CTTGAAACAAAAACAAGGGTGAATTTTGGATTTGGATGAATTTGTGATATTCAAATTGGAACCAA
131 CTTGAAACAAAAACAAAGGTAAATTTTAGACTTGGATGAATTTGTGATAATCAAATTGGAACCAA
* * *
6276788 TGTCGATTAAAATTGAAATTTGTAATTTTAAAGCACTAGAAACCTTGATTGCACTTCGAGAAGCG
196 TATCGATTAAAATTGAAATTTGTAATTTTAAAGCACCAAAAACCTTGATTGCACTTCGAGAAGCG
* * * * *
6276853 TAAAATTACCAAAATTCATTTTAAGAGTATTTTTGTATTTTGACCTTTTCAAAAACGAATTGTAG
261 TAAAATTACCAAAATACATTTTAAGAGTATTTTTATATTTAGACCTTCTCAAAAACAAATTGTAG
**
6276918 TGAAAATTTACAGATCATAATTACATATTTTTTGAGAATTTCTTATGCATTGGAAACCCAGATCA
326 TGAAAATTTACAGATCATAATTACATATTTTTTGAGAATTTCTTATGCATTAAAAACCCAGATCA
* * *
6276983 CACCTTGGAGGTGTGAAATTATAAAAATACCCTAAAAGGTATTTTTATAATTTGACCTTCCTAAG
391 CACCTTAGAGGTGTGAAATTATAAAAATACACTAAAAGGTATTTTTATAATTTGACCTTCCCAAG
* * **** *
6277048 GCTAGATTTTTGTGAAATGCTTTAGATCATGAGAGCATTGATTTCTAGGAAAATGGCCTAAAGAA
456 GCTAAAATTTCACAAAATGCTCTAGATCATGAGAGCATTGATTTCTAGGAAAATGGCCTAAAGAA
6277113 GA
521 GA
* * * *
6277115 AAAACTTTGTATT-AGAGGTAAAATAATCTTTTCATTTGATCTAAGAGCTTTCAAAATTACATCT
1 AAAACTTTGTATTAAG-GGTAAAATAATCTTTTCATGTGATCTAAGAACTTTCAAAAGTACATAT
* ** * * * * *
6277179 TTGGCAGTAAATTATTTGGACCATT-GATCACATTGGGAATCTTGATCTAAAGGTGAAAGTTTGC
65 TTGACAGTAAACAATCTAGACCATTGGATCACATTGGAAAT-TTGATCCAAAGGTGAAAGTTTGA
*
6277243 TCCTTGAAACAAAAATAAAGGTAAATTTTAGACCCTTGGATGAATTTGTGATAATCAAATTGGAA
129 TCCTTGAAACAAAAACAAAGGTAAATTTTAGA--CTTGGATGAATTTGTGATAATCAAATTGGAA
* * * * *
6277308 CCAATATGGATTAAGATTG-AATTTAGTAATTTTAAAGCCCCAAAAACTTTGATTGCACTTTGAG
192 CCAATATCGATTAAAATTGAAATTT-GTAATTTTAAAGCACCAAAAACCTTGATTGCACTTCGAG
* * **
6277372 ATG-GTAAAATTACCAAAATACATTTT-AGGGATATTTTTATAATTTAG-CCTTCTCAAAGTCAA
256 AAGCGTAAAATTACCAAAATACATTTTAAGAG-TATTTTTAT-ATTTAGACCTTCTCAAAAACAA
* * ** * * * * *
6277434 ATTTTTGTGAAAATTTGTAGATCATAATT-GATTTTTTTTTAGGATTT-TTGATGTATTAAAAAC
319 ATTGTAGTGAAAATTTACAGATCATAATTACATATTTTTTGAGAATTTCTT-ATGCATTAAAAAC
* * * ** * *
6277497 CTAGATCACACCTTAAGAGGTGTTAAATTATAAAAATA-ACTTAGGGGTATTTTTATCATTTTAC
383 CCAGATCACACCTT-AGAGGTGTGAAATTATAAAAATACACTAAAAGGTATTTTTATAATTTGAC
* *
6277561 TTTCCCAAGG-TCAAAATTTCACAAAATGGTCTAGATCAT
447 CTTCCCAAGGCT-AAAATTTCACAAAATGCTCTAGATCAT
6277600 TGTTTGATAT
Statistics
Matches: 404, Mismatches: 71, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
521 18 0.04
522 208 0.51
523 92 0.23
524 86 0.21
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (522 bp):
AAAACTTTGTATTAAGGGTAAAATAATCTTTTCATGTGATCTAAGAACTTTCAAAAGTACATATT
TGACAGTAAACAATCTAGACCATTGGATCACATTGGAAATTTGATCCAAAGGTGAAAGTTTGATC
CTTGAAACAAAAACAAAGGTAAATTTTAGACTTGGATGAATTTGTGATAATCAAATTGGAACCAA
TATCGATTAAAATTGAAATTTGTAATTTTAAAGCACCAAAAACCTTGATTGCACTTCGAGAAGCG
TAAAATTACCAAAATACATTTTAAGAGTATTTTTATATTTAGACCTTCTCAAAAACAAATTGTAG
TGAAAATTTACAGATCATAATTACATATTTTTTGAGAATTTCTTATGCATTAAAAACCCAGATCA
CACCTTAGAGGTGTGAAATTATAAAAATACACTAAAAGGTATTTTTATAATTTGACCTTCCCAAG
GCTAAAATTTCACAAAATGCTCTAGATCATGAGAGCATTGATTTCTAGGAAAATGGCCTAAAGAA
GA
Found at i:6278476 original size:162 final size:161
Alignment explanation
Indices: 6278110--6278715 Score: 608
Period size: 159 Copynumber: 3.8 Consensus size: 161
6278100 ATTTGCTCTG
* *
6278110 AGTTGAAGG-TCAACTTTGAAACCAAACAAAATGAATAGGAGAAATGCTTTTTTTTTGGCAAACA
1 AGTTGAAGGACCAACTTTGAAACCAAACAAAATGAATAGGAGAAATGC-TTTTTTTTGGTAAACA
* ** * * **
6278174 AAAGCAACAATATCATGTATCCCAATGGTTAC-AAACT-TATTTGGTTGGTACTTTGT-CTAAAG
65 AAAGCAACAATATCGTGTATCCCAATGGGAACTATA-TAT-TTTGCTTGGTACTTTGTGAAAAAG
* **
6278236 AACTTATATTTTTACA-ATGGAGGAAGTTTGAAAG
128 AACTTATACTTTTA-AGATGGAGGAAGTTTGAACC
* * * **
6278270 AGTTGAAAGACTAACTTTGGAACCAAACAAAATGAATAGGAGAAATGC-TTTTCATGGTAAACAA
1 AGTTGAAGGACCAACTTTGAAACCAAACAAAATGAATAGGAGAAATGCTTTTTTTTGGTAAACAA
* * * *
6278334 AAGCAACAATATCGTGTATCCGAATGGGACCTATATATTTTGCTTGGTATTTTGTGAAAAAAAAA
66 AAGCAACAATATCGTGTATCCCAATGGGAACTATATATTTTGCTTGGTACTTTGTG--AAAAAGA
* * *
6278399 ACTTATACTTTTAAGAAGAAAGAAGTTTGAACC
129 ACTTATACTTTTAAGATGGAGGAAGTTTGAACC
* * *
6278432 AGTT-AGAGGACCAACTTTGAAACAAAACAAAATGAATGGGAGAAAATGC-TTTTTTTGGTAACC
1 AGTTGA-AGGACCAACTTTGAAACCAAACAAAATGAATAGGAG-AAATGCTTTTTTTTGGTAAAC
* * * * ** * *
6278495 AAAAGCAATAA-ATCGTGCATCCCAATGGTAAC-AAACTATTTCACATGGTAATTTGTG-AAAAG
64 AAAAGCAACAATATCGTGTATCCCAATGGGAACTATA-TATTTTGCTTGGTACTTTGTGAAAAAG
* * *
6278557 AACTTATACATTTATGATGGAGGAAGTTTGAACT
128 AACTTATACTTTTAAGATGGAGGAAGTTTGAACC
* * **
6278591 AGTTGAAGGACCAACTTTGAAACCAAGCAAAATGTAA-AGGATAAATGCTTTTTTTTGGTAAATG
1 AGTTGAAGGACCAACTTTGAAACCAAACAAAATG-AATAGGAGAAATGCTTTTTTTTGGTAAACA
* * * *
6278655 AAAGCAACAATATC-TAGTATCCTAATGAGAACTATTTATTTTGCTTGGCACTTTGTGAAAA
65 AAAGCAACAATATCGT-GTATCCCAATGGGAACTATATATTTTGCTTGGTACTTTGTGAAAA
6278716 CAATTGCCAC
Statistics
Matches: 361, Mismatches: 68, Indels: 33
0.78 0.15 0.07
Matches are distributed among these distances:
158 6 0.02
159 142 0.39
160 45 0.12
161 43 0.12
162 98 0.27
163 27 0.07
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (161 bp):
AGTTGAAGGACCAACTTTGAAACCAAACAAAATGAATAGGAGAAATGCTTTTTTTTGGTAAACAA
AAGCAACAATATCGTGTATCCCAATGGGAACTATATATTTTGCTTGGTACTTTGTGAAAAAGAAC
TTATACTTTTAAGATGGAGGAAGTTTGAACC
Found at i:6280156 original size:159 final size:158
Alignment explanation
Indices: 6279677--6280856 Score: 1096
Period size: 159 Copynumber: 7.5 Consensus size: 158
6279667 TAGCTTTTTA
* * * * * ** * *
6279677 ACTTTGTGCAAACAACCTATAATTTTATGATCA-AGGAAGTTTGAACAAGTT-GATGACCAACTT
1 ACTTTGTGAAAAGAACTTATACTTTTACGAT-AGAGGAAGTTTGAATGAGTTAAAGGACCAACTT
* ** * * *
6279740 TGAAACAAAACAAAATGAAAGGGAGAAAAACTTTTTTTGGTAAA-AGAAAACATCAATATCATGT
65 TGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACA-AAAGCAACAATATCTTGT
* * ** * *
6279804 ATCCCAATAGTAAAGAACTATTTTGCTTGGT
129 ATCCTAA-AGGAACTATCTATTTTGCTTGAT
* * * * ** * *
6279835 ACTTTATGAAAAGAA-TGTACACTTTTACAATGGATAAAGTTTAAATTAGTTAAAGGACCAACTT
1 ACTTTGTGAAAAGAACT-TATACTTTTACGATAGAGGAAGTTTGAATGAGTTAAAGGACCAACTT
* * * * * *
6279899 TAAAACCAAATAGAATGAAAGGGAGAAATGCTTTTTTTTTTTGTAAACAAAAGCAACAATTTATT
65 TGAAACCAAACAAAATGAAAGGGAGAAATGC---TTTTTTTGGTAAACAAAAGCAACAATATCTT
*
6279964 GTATCCCAATAGGAACTATCTATTTTGCTTGAT
127 GTATCCTAA-AGGAACTATCTATTTTGCTTGAT
* * * * * *
6279997 ACTTTGTGCAAAGAAATTATACTTTTATGATTGAGGAAGTTTGAACGAGTTGAAA-GACTAACTT
1 ACTTTGTGAAAAGAACTTATACTTTTACGATAGAGGAAGTTTGAATGAGTT-AAAGGACCAACTT
* * *
6280061 TGAAACCAAACAAAATGAAAGGAAGAAATGCTTTTTTTGGTAAATAAAAGCAACAATATCTTGTC
65 TGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTA
* *
6280126 TCCTAACAAGAACTATCTATTTTTCTTGAT
130 TCCTAA-AGGAACTATCTATTTTGCTTGAT
* * * *
6280156 ATTTTGTGAAAAGAACTTATATTTTTACGATAGATGAAGTTTGAATAAGTTAAAGGACCAACTTT
1 ACTTTGTGAAAAGAACTTATACTTTTACGATAGAGGAAGTTTGAATGAGTTAAAGGACCAACTTT
* * * *
6280221 GAAACCAAATAAAATGAAAGGCACAAATGCTTTTTTTGGTAAACAAAAGCAAGAATAT-TATGTA
66 GAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCT-TGTA
* * ** * *
6280285 TCCTAATGGTAACAAAT-TATACTACTTGGT
130 TCCTAAAGG-AAC-TATCTATTTTGCTTGAT
* * * * * * * *
6280315 ACTTTGTGAAAAGGATTTACATTTTTACAACAGAGGAAGTTTGAATGAGTTGAAGGACCTACTTT
1 ACTTTGTGAAAAGAACTTATACTTTTACGATAGAGGAAGTTTGAATGAGTTAAAGGACCAACTTT
* *
6280380 GAAACCAAACAAAATG-AA--TA-AAA-GCTTCTTTTGGTAAACAAAAGCAACAATATCATT-TA
66 GAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATC-TTGTA
* * * *
6280439 TCCCTATTA-TAACAAAT-TATTTTGCTTGGT
130 T-CCTA-AAGGAAC-TATCTATTTTGCTTGAT
* * * ** * * *
6280469 ATTTTGTGAAAAGAACCTATACTTTTACGGT-GAAGGAAGTTTGAACAAGTTGAAGGGCTAACTT
1 ACTTTGTGAAAAGAACTTATACTTTTACGATAG-AGGAAGTTTGAATGAGTTAAAGGACCAACTT
* * * *
6280533 TGAAACCAAACAAAATAAAAGGGAGAAATACCTTTTTTGGTAAAC-AAAGCAACAATATCATGTA
65 TGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTA
*
6280597 TCCTTATAGGAACTATGC-ATTTTGCTTGAT
130 TCC-TAAAGGAACTAT-CTATTTTGCTTGAT
* *
6280627 ACTTTGTGAAAAGAACTTATA----T--GATCGAGGAAGTTTGAATGAGTTAAATGACCAACTTT
1 ACTTTGTGAAAAGAACTTATACTTTTACGATAGAGGAAGTTTGAATGAGTTAAAGGACCAACTTT
*
6280686 GAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATAT-TTGTCT
66 GAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTAT
* * * * *
6280750 CCCAATGGTAACAAACTATTTTGCTTGTT
131 CCTAAAGG-AACTATCTATTTTGCTTGAT
* *
6280779 ACTTTGTGAAAAGATCTTATACTTTTACGATAGAGGAAATTTGAATGAGTTAAAGGACCAACTTT
1 ACTTTGTGAAAAGAACTTATACTTTTACGATAGAGGAAGTTTGAATGAGTTAAAGGACCAACTTT
* *
6280844 GAAATCGAACAAA
66 GAAACCAAACAAA
6280857 TGGGTGAAAT
Statistics
Matches: 834, Mismatches: 150, Indels: 76
0.79 0.14 0.07
Matches are distributed among these distances:
151 4 0.00
152 110 0.13
153 15 0.02
154 113 0.14
155 10 0.01
156 3 0.00
157 8 0.01
158 142 0.17
159 298 0.36
160 2 0.00
162 124 0.15
163 5 0.01
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (158 bp):
ACTTTGTGAAAAGAACTTATACTTTTACGATAGAGGAAGTTTGAATGAGTTAAAGGACCAACTTT
GAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTAT
CCTAAAGGAACTATCTATTTTGCTTGAT
Found at i:6280575 original size:313 final size:308
Alignment explanation
Indices: 6279710--6280856 Score: 973
Period size: 321 Copynumber: 3.7 Consensus size: 308
6279700 TTTATGATCA
** * * * * **
6279710 AGGAAGTTTGAACAAGTTG-ATGACCAACTTTGAAACAAAACAAAATGAAAGGGAGAAAAACTTT
1 AGGAAGTTTGAATGAGTTGAAAGACCTACTTTGAAACCAAACAAAATGAAA-GAAGAAATGCTTT
* * * * * * *
6279774 TTTTGGTAAA-AGAAAACATCAATATCATGTATCCCAATAGTAA-AGAACTATTTTGCTTGGTAC
65 TTTTGGTAAACA-AAAGCAACAATATC-TTTATCCCTATA-TAACA-AATTATTTTGCTTGATAT
* * * * ** * * *
6279837 TTTATGAAAAGAA-TGTACACTTTTACAATGGATAAAGTTTAAATTAGTTAAAGGACCAACTTTA
126 TTTGTGAAAAGAACT-TATACTTTTACGATAGAGGAAGTTTGAATAAGTTAAAGGACCAACTTTG
* * * * * * * * *
6279901 AAACCAAATAGAATGAAAGGGAGAAATGCTTTTTTTTTTTGTAAACAAAAGCAACAAT-TTATTG
190 AAACCAAACAAAATAAAAGGCACAAATAC---CTTTTTTGGTAAAC-AAAGCAACAATATCA-TG
* * ** * * * * *
6279965 TATCCCAATAGGAACTAT-CTATTTTGCTTGATACTTTGTGCAAAGAAATTATACTTTTATGATT
250 TATCCTAATAGGAACAATGC-ATACTACTTGATACTTTGTGAAAAGAACTTATA---TCA--A-C
6280029 G
308 G
*
6280030 AGGAAGTTTGAACGAGTTGAAAGA-CTAACTTTGAAACCAAACAAAATGAAAGGAAGAAATGCTT
1 AGGAAGTTTGAATGAGTTGAAAGACCT-ACTTTGAAACCAAACAAAATGAAA-GAAGAAATGCTT
* * * * *
6280094 TTTTTGGTAAATAAAAGCAACAATATC-TTGTCTCCTA-ACAAGAACTATCTATTTTTCTTGATA
64 TTTTTGGTAAACAAAAGCAACAATATCTTTATC-CCTATATAACAA--AT-TATTTTGCTTGATA
* *
6280157 TTTTGTGAAAAGAACTTATATTTTTACGATAGATGAAGTTTGAATAAGTTAAAGGACCAACTTTG
125 TTTTGTGAAAAGAACTTATACTTTTACGATAGAGGAAGTTTGAATAAGTTAAAGGACCAACTTTG
* * * * * *
6280222 AAACCAAATAAAATGAAAGGCACAAATGCTTTTTTTGGTAAACAAAAGCAAGAATATTATGTATC
190 AAACCAAACAAAATAAAAGGCACAAATACCTTTTTTGGTAAAC-AAAGCAACAATATCATGTATC
* * *
6280287 CTAAT-GGTAACAAAT-TATACTACTTGGTACTTTGTGAAAAGGATTTACATT-TTTACAACAG
254 CTAATAGG-AAC-AATGCATACTACTTGATACTTTGTGAAAA-GA---AC-TTATAT-CAAC-G
* * *
6280348 AGGAAGTTTGAATGAGTTGAAGGACCTACTTTGAAACCAAACAAAATG-AA-TA-AAA-GCTTCT
1 AGGAAGTTTGAATGAGTTGAAAGACCTACTTTGAAACCAAACAAAATGAAAGAAGAAATGCTTTT
*
6280409 TTTGGTAAACAAAAGCAACAATATCATTTATCCCTATTATAACAAATTATTTTGCTTGGTATTTT
66 TTTGGTAAACAAAAGCAACAATATC-TTTATCCCTA-TATAACAAATTATTTTGCTTGATATTTT
* * * * * *
6280474 GTGAAAAGAACCTATACTTTTACGGT-GAAGGAAGTTTGAACAAGTTGAAGGGCTAACTTTGAAA
129 GTGAAAAGAACTTATACTTTTACGATAG-AGGAAGTTTGAATAAGTTAAAGGACCAACTTTGAAA
* * *
6280538 CCAAACAAAATAAAAGGGAGAAATACCTTTTTTGGTAAACAAAGCAACAATATCATGTATCCTTA
193 CCAAACAAAATAAAAGGCACAAATACCTTTTTTGGTAAACAAAGCAACAATATCATGTATCCTAA
* ** * * *
6280603 TAGGAACTATGCATTTTGCTTGATACTTTGTGAAAAGAACTTATATGATCG
258 TAGGAACAATGCATACTACTTGATACTTTGTGAAAAGAACTTATATCAACG
* *
6280654 AGGAAGTTTGAATGAGTT-AAATGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTT
1 AGGAAGTTTGAATGAGTTGAAA-GACCTACTTTGAAACCAAACAAAATGAAA-GAAGAAATGCTT
* * * * * *
6280718 TTTTTGGTAAACAAAAGCAACAATAT-TTGTCTCCCAATGGTAACAAACTATTTTGCTTGTTACT
64 TTTTTGGTAAACAAAAGCAACAATATCTT-TATCCCTAT-ATAACAAATTATTTTGCTTGATATT
* * *
6280782 TTGTGAAAAGATCTTATACTTTTACGATAGAGGAAATTTGAATGAGTTAAAGGACCAACTTTGAA
127 TTGTGAAAAGAACTTATACTTTTACGATAGAGGAAGTTTGAATAAGTTAAAGGACCAACTTTGAA
* *
6280847 ATCGAACAAA
192 ACCAAACAAA
6280857 TGGGTGAAAT
Statistics
Matches: 690, Mismatches: 100, Indels: 84
0.79 0.11 0.10
Matches are distributed among these distances:
305 2 0.00
306 44 0.06
307 6 0.01
308 4 0.01
309 4 0.01
310 92 0.13
311 34 0.05
312 47 0.07
313 135 0.20
314 9 0.01
315 5 0.01
316 5 0.01
317 4 0.01
318 104 0.15
319 15 0.02
320 24 0.03
321 150 0.22
322 4 0.01
323 2 0.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.31
Consensus pattern (308 bp):
AGGAAGTTTGAATGAGTTGAAAGACCTACTTTGAAACCAAACAAAATGAAAGAAGAAATGCTTTT
TTTGGTAAACAAAAGCAACAATATCTTTATCCCTATATAACAAATTATTTTGCTTGATATTTTGT
GAAAAGAACTTATACTTTTACGATAGAGGAAGTTTGAATAAGTTAAAGGACCAACTTTGAAACCA
AACAAAATAAAAGGCACAAATACCTTTTTTGGTAAACAAAGCAACAATATCATGTATCCTAATAG
GAACAATGCATACTACTTGATACTTTGTGAAAAGAACTTATATCAACG
Found at i:6281466 original size:158 final size:158
Alignment explanation
Indices: 6280907--6282019 Score: 1045
Period size: 158 Copynumber: 7.0 Consensus size: 158
6280897 CATATATCCC
* * * * ** * ** *
6280907 AATGAATGGGAGAATTGCTTCTTTTGGAAAATGAAAGCAACAATATCTTGTATCCCAGGGGGAGC
1 AATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATCCAATAGGGA-A
* * * * * *
6280972 TATATATTTTGCTTGATAGTTT-TGGAAAAAAACTTATACTTTTATGATGAAGGAAGTTTGAA-T
65 TATCTATTTTGCTTGGTACTTTAT-GAAAAGAACTTATACTTTTACGATGAAGGAAGTTTGAACG
6281035 ACGTTGAAGGACCAACTTTGAAACCAAACAA
129 A-GTTGAAGGACCAACTTTGAAACCAAACAA
* * *
6281066 AATGAAAGGGAAAAATGCATTTTTTTGGTAAACCAAAGCAGCAATATCTTGTATCCCAATA-GGA
1 AATGAAAGGGAGAAATGC-TTTTTTTGGTAAACAAAAGCAACAATATCTTGTAT-CCAATAGGGA
** * * *
6281130 ACTATCTATTTTGCTTGACATTATTATGAAAAGAA-TATATACATTTACGATGGAA-GAAATTTG
64 A-TATCTATTTTGCTTGGTACT-TTATGAAAAGAACT-TATACTTTTACGAT-GAAGGAAGTTTG
* * * * * *
6281193 AATGAGTTAAAAGCCCAACTTTGAAACCATATAA
125 AACGAGTTGAAGGACCAACTTTGAAACCAAACAA
* * * *
6281227 AATGAAAGGGAGAAATGATTTTTTTGGCAAACAAAAGCAACAATTTCTTGTATCCCAATA-AGAG
1 AATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTAT-CCAATAGGGA-
* * * * * * *
6281291 CTATCTATTTTGGTTGGTAATTTATGAAAATAACTTGTACCTTTATGATGAAGGAAGTTTGAACG
64 ATATCTATTTTGCTTGGTACTTTATGAAAAGAACTTATACTTTTACGATGAAGGAAGTTTGAACG
* *
6281356 AGTTGAAAGACCAACTTTGAAAGCAAACAA
129 AGTTGAAGGACCAACTTTGAAACCAAACAA
** * * *
6281386 AAAAAAAAGGAGAAATGCCTTATTT-GTAAACAAAAGCAACAATATCTTGTATCCTAATAGGGAA
1 AATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATCC-AATAGGGAA
* * * *
6281450 TATCTATTTTACTTGGTGCTTTGTGAATAA-AACTTATA-TTTTACGATGTAGGAAGTTTGAACG
65 TATCTATTTTGCTTGGTACTTTATGAA-AAGAACTTATACTTTTACGATGAAGGAAGTTTGAACG
* *
6281513 AGTTGAAGGATCAACTTTGAAACCAAACAT
129 AGTTGAAGGACCAACTTTGAAACCAAACAA
* *
6281543 AATGAAAGGGTA-TAAGGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATTCCAATA-GGA
1 AATGAAAGGG-AGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTA-TCCAATAGGGA
* * * * * * *
6281606 ACTATCCACTTTGCTTGGTACTTTATCAAAAGAACTTATA-TTTTACGATGGAGCAAGGTTGAAT
64 A-TATCTATTTTGCTTGGTACTTTATGAAAAGAACTTATACTTTTACGATGAAGGAAGTTTGAAC
* *
6281670 GAGATGAAGGACCAAATTTGAAACCAAACAA
128 GAGTTGAAGGACCAACTTTGAAACCAAACAA
* * * * *
6281701 ACTGAAAGGGAAAAATGCTTTTTTTGGTAAACAAAAACAACAATATCTTATATCCTAAT-GGAAA
1 AATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATCC-AATAGGGAA
* * * * * * * * *
6281765 CTATCTATTTTGCTTGAT-CTTTTTGAAATGAACTTATACTTATATGATGGATGAAATTTGAACA
65 -TATCTATTTTGCTTGGTACTTTATGAAAAGAACTTATACTTTTACGATGAAGGAAGTTTGAACG
* * *
6281829 AGTTAAAGGACCAACTTTGAAACCAAATAG
129 AGTTGAAGGACCAACTTTGAAACCAAACAA
* * * * * **
6281859 AATGAAAGGGAGAAATACTTTTGTTTGGTAAA-AAAAGCAAAAATATCATGTATTGCAACAGTCA
1 AATGAAAGGGAGAAATGCTTTT-TTTGGTAAACAAAAGCAACAATATCTTGTA-TCCAATAGGGA
* * * *
6281923 A-AGACTATTTTTCTTGGTACTTTGTGAAAAGAACTTATACTTTTAC-AGTGGAGGAAGTTTGAA
64 ATA-TCTATTTTGCTTGGTACTTTATGAAAAGAACTTATACTTTTACGA-TGAAGGAAGTTTGAA
** *
6281986 CGAGTTGAAGGATTAACTTTAAAACCAAACAA
127 CGAGTTGAAGGACCAACTTTGAAACCAAACAA
6282018 AA
1 AA
6282020 GTACTTTGTG
Statistics
Matches: 781, Mismatches: 144, Indels: 58
0.79 0.15 0.06
Matches are distributed among these distances:
157 94 0.12
158 326 0.42
159 175 0.22
160 108 0.14
161 73 0.09
162 5 0.01
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (158 bp):
AATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATCCAATAGGGAAT
ATCTATTTTGCTTGGTACTTTATGAAAAGAACTTATACTTTTACGATGAAGGAAGTTTGAACGAG
TTGAAGGACCAACTTTGAAACCAAACAA
Found at i:6281733 original size:316 final size:317
Alignment explanation
Indices: 6280907--6284863 Score: 1229
Period size: 316 Copynumber: 12.2 Consensus size: 317
6280897 CATATATCCC
* * * * ** * *** *
6280907 AATGAATGGGAGAATTGCTTCTTTTGGAAAATGAAAGCAACAATATCTTGTATCCCAGGGGGAGC
1 AATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATTCCAATAGGAAC
* * * * * *
6280972 TATATATTTTGCTTGATAGTTT-TGGAAAAAAACTTATACTTTTATGATGAAGGAAGTTTGAA-T
66 TATCTATTTTGCTTGGTACTTTAT-GAAAAGAACTTATACTTTTACGATGAAGGAAGTTTGAACG
*
6281035 ACGTTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAAAAATGCATTTTTTTGGTAAACC
130 A-GTTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAAAAATGC-TTTTTTTGGTAAACA
* *
6281100 AAAGCAGCAATATCTTGTATCCCAATA-GGAACTATCTATTTTGCTTGA-CATTATTATGAAAAG
193 AAAGCAACAATATCTTGTATCCTAATAGGGAACTATCTATTTTGCTTGATC--T-TTATGAAAA-
* * * * *
6281163 AA-TATATACATTTACGATGGAAGAAATTTGAATGAGTTAAAAGCCCAACTTTGAAACCATATAA
254 AACT-TATACTTTTACGATGGAAGAAATTTGAACGAGTTAAAGGACCAACTTTGAAACCAAATAA
* * * * * *
6281227 AATGAAAGGGAGAAATGATTTTTTTGGCAAACAAAAGCAACAATTTCTTGTATCCCAATAAGAGC
1 AATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATTCCAATAGGAAC
* * * * * *
6281292 TATCTATTTTGGTTGGTAATTTATGAAAATAACTTGTACCTTTATGATGAAGGAAGTTTGAACGA
66 TATCTATTTTGCTTGGTACTTTATGAAAAGAACTTATACTTTTACGATGAAGGAAGTTTGAACGA
* * ** * * * *
6281357 GTTGAAAGACCAACTTTGAAAGCAAACAAAAAAAAAAGGAGAAATGCCTTATTT-GTAAACAAAA
131 GTTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAAAAATGCTTTTTTTGGTAAACAAAA
* * *
6281421 GCAACAATATCTTGTATCCTAATAGGGAA-TATCTATTTTACTTGGTGCTTTGTGAATAAAACTT
196 GCAACAATATCTTGTATCCTAATAGGGAACTATCTATTTTGCTTGAT-CTTTATGAA-AAAACTT
* * * * * * *
6281485 ATA-TTTTACGATGTAGGAAGTTTGAACGAGTTGAAGGATCAACTTTGAAACCAAACAT
259 ATACTTTTACGATGGAAGAAATTTGAACGAGTTAAAGGACCAACTTTGAAACCAAATAA
* *
6281543 AATGAAAGGGTA-TAAGGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATTCCAATAGGAA
1 AATGAAAGGG-AGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATTCCAATAGGAA
* * * * * * *
6281607 CTATCCACTTTGCTTGGTACTTTATCAAAAGAACTTATA-TTTTACGATGGAGCAAGGTTGAATG
65 CTATCTATTTTGCTTGGTACTTTATGAAAAGAACTTATACTTTTACGATGAAGGAAGTTTGAACG
* * *
6281671 AGATGAAGGACCAAATTTGAAACCAAACAAACTGAAAGGGAAAAATGCTTTTTTTGGTAAACAAA
130 AGTTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAAAAATGCTTTTTTTGGTAAACAAA
* * * * *
6281736 AACAACAATATCTTATATCCTAAT-GGAAACTATCTATTTTGCTTGATCTTTTTGAAATGAACTT
195 AGCAACAATATCTTGTATCCTAATAGGGAACTATCTATTTTGCTTGATCTTTATGAAA-AAACTT
* * * * *
6281800 ATACTTATATGATGGATGAAATTTGAACAAGTTAAAGGACCAACTTTGAAACCAAATAG
259 ATACTTTTACGATGGAAGAAATTTGAACGAGTTAAAGGACCAACTTTGAAACCAAATAA
* * * * * *
6281859 AATGAAAGGGAGAAATACTTTTGTTTGGTAAA-AAAAGCAAAAATATCATGTATTGCAACAGTCA
1 AATGAAAGGGAGAAATGCTTTT-TTTGGTAAACAAAAGCAACAATATCTTGTATTCCAATAG-GA
** * * *
6281923 AAGA-CTATTTTTCTTGGTACTTTGTGAAAAGAACTTATACTTTTAC-AGTGGAGGAAGTTTGAA
64 ACTATCTATTTTGCTTGGTACTTTATGAAAAGAACTTATACTTTTACGA-TGAAGGAAGTTTGAA
** * ** *
6281986 CGAGTTGAAGGATTAACTTTAAAACCAAACAAAA-GTACTTTGTG-AAAA-GACTTATGGTTTTA
128 CGAGTTGAAGGACCAACTTTGAAACCAAACAAAATG-A--AAGGGAAAAATG-CTT-T--TTTT-
** * * ** *
6282048 CAATCAAGGGAGTCTGAATGAGTGAAAGACCAA-AT-TTACAACCAAACTAAATGAATGGGAGA-
185 -GGT-AA---A--C--AA--A-AG-CA-A-CAATATCTT-GTATC---CT-AAT--A-GGGA-AC
* * ** * * ** * *
6282110 AATGT-TTTT--TT--T-TTGGTAAACAAAAGCAATAATACCATGTATCCCAATGGTAACAAACT
226 TATCTATTTTGCTTGATCTTTATGAA-AAAA-C--TTATA-C-T-T-TTACGATGG-AA-GAA--
* ** * ** * * * * * **
6282169 ATTTTTCATGGTACTTTGTGAAAAAAACCTATTCTTTTACGATCGAGGAA
279 A---TT--T-GAAC-GAGT-TAAAGGACC-A-ACTTTGA-AACCAAATAA
** * ** * * *** * * *
6282219 TTTTGAACGAGTTG-TAGGAC-TAACTTGGAAATCAAACAAAATGAAAGGGAGATAGTTTTTTTG
1 -AATGAAAG-GGAGAAATG-CTTTTTTTGG---T-AAACAAAA-GCAA--CA-ATA----TCTT-
** * * * * *
6282282 GTA-AACAAAAGTAA-TAATATCATGTATCCAAAAGGTAGCAAACTATTTTGCTTAGCACTTTTT
50 GTATTCCAATAGGAACT-ATCT-AT-T-T--------T-G----C----TTG----GTACTTTAT
* * * * *
6282345 CAAAAGAACCTATACTTTTACGATGAAGAAAGTTTGAACAAG-T---GGACCAACTATGAAACCA
90 GAAAAGAACTTATACTTTTACGATGAAGGAAGTTTGAACGAGTTGAAGGACCAACTTTGAAACCA
* * * * ** * *
6282406 AATAAAATGAAAGGGAGAAATGTTTTTTTTGGTAAACCAAAGCAATGATATATTGTATCCCAATA
155 AACAAAATGAAAGGGAAAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATCCTAATA
* * ** * * * * * * *
6282471 -GAAACTATATATATATATATTTTATACTTTGTGAAATGAACATATACTTTTAAGATGGAGGAAG
220 GGGAACTATCTAT-T-T-TGCTTGAT-CTTTATGAAA-AAACTTATACTTTTACGATGGAAGAAA
* * *
6282535 TTTAAATGAGTTAAAGGACCAACTTTGAAACCAAAAAA
280 TTTGAACGAGTTAAAGGACCAACTTTGAAACCAAATAA
* * * **
6282573 AATGAAAAGGTA-AAATTG-TTTTTTTGGTAAACAAAAGCAAAAATAT-TGCGTACCCCAAT-GG
1 AATG-AAAGGGAGAAA-TGCTTTTTTTGGTAAACAAAAGCAACAATATCT-TGTATTCCAATAGG
* * * * * *
6282634 TAACAAACTAATTTGCTTAGTACTTTGTGAAAAGAACTTATACCTTTACGAT-ATAGGAAGTTTG
63 -AACTATCTATTTTGCTTGGTACTTTATGAAAAGAACTTATACTTTTACGATGA-AGGAAGTTTG
* * *
6282698 AACAAGTTGAAGGATCAACTTTGAAACCAAACAAAATGAAAGGGAGAAAAT--ATTTTTTGGTAA
126 AACGAGTTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGA-AAAATGCTTTTTTTGGTAA
* * ** * *
6282761 CCAAAAGCAACAATAACTTGTATTCC--------AAC--TCTATTTTATTTGGTACTTTGTGAAA
190 ACAAAAGCAACAATATCTTGTA-TCCTAATAGGGAACTATCTATTTTGCTTGAT-CTTTATG-AA
** * * ** ** *
6282816 AAAACTTATACAATTACAAT-GTAGAAAGTTTGAAAAAGTTAAAGGATGAACTTTGAGACCAAAT
252 AAAACTTATACTTTTACGATGGAAGAAA-TTTGAACGAGTTAAAGGACCAACTTTGAAACCAAAT
6282880 AA
316 AA
* * ** * * *
6282882 AATGACAGAGTTAAATG-TTTTTTATGGAAAACGAAAA-CAACAATATCTTGTATCCCAATGGGA
1 AATGAAAGGGAGAAATGCTTTTTT-TGGTAAAC-AAAAGCAACAATATCTTGTATTCCAATAGGA
* * * ** * * *
6282945 ACTATCTATTTTGCTTGATATTTTGTCCAAAGAACATATACTTTTACAATAAAGGAAGTTT-AAT
64 ACTATCTATTTTGCTTGGTACTTTATGAAAAGAACTTATACTTTTACGATGAAGGAAGTTTGAA-
** * * * ** * * *
6283009 AAAG-TGAATGACCAATTTTGAAACCAAACAAAAAGAGTGGGAGAAATACTTCTTTTGGTAAACA
128 CGAGTTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAAAAATGCTTTTTTTGGTAAACA
** * * * * * *
6283073 AAAGCTCCAATATCGTGTAT-TTCAAT-GGTAAC-AGACTATTTTGCTTGGTACTTTGTG-----
193 AAAGCAACAATATCTTGTATCCT-AATAGGGAACTA-TCTATTTTGCTTGAT-CTTTATGAAAAA
* * * ** ** *
6283130 ---TATACTTTTACAAT-GAAG---TCTGAACGAGTTTAAGGATGTATACTTTGAAATGAATGTA
255 ACTTATACTTTTACGATGGAAGAAATTTGAACGAGTTAAAGGA-CCA-ACTTTGAAACCAA-ATA
6283188 A
317 A
* * * * * * *** * * * *
6283189 ACTTTGTGAAAAGAACATATACTTTGAAAT--CAAACAAAATGAATAGGAGAAATGCTTTTTGTG
1 A----ATGAAAGGGAGAAATGCTTT-TTTTGGTAAACAAAA-GCA-A-CA-ATAT-C---TTGT-
* ** * * * * *** *
6283252 GTAAACAA-AGGCAATAATATCT-TGTATTCCATCAGGAACTATCTAT--TTTG--CTTGATATT
52 AT-TCCAATAGG--A-ACTATCTAT-T-TTGC-T-TGGTACT-T-TATGAAAAGAACTT-ATACT
* ** * **
6283311 TTGTA-GAAAGAACTTATACTTTTATGATTAAAAAAGTTTGAATGAGTTAAAGGACCAACTTTGA
106 TT-TACG-ATGAA-GGA-A--GTT-TG----AACGAG-TTGA---------AGGACCAACTTTGA
* * * * * * *
6283375 GACCAAACAAAATGAAATGGAGAAATACTTTCTTGGGTAAACAAAAGTAACAATATCTTGTATCC
150 AACCAAACAAAATGAAAGGGAAAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATCC
* ** * * * *
6283440 CAAT-GATAACTATCTATTGTGCTTTATACTTTGTGAAAAGAACTTATACTTTTACGATGGAGGA
215 TAATAGGGAACTATCTATTTTGCTTGAT-CTTTATGAAAA-AACTTATACTTTTACGATGGAAGA
* * * * *
6283504 AGTTTGAACAAGTTGAAGGACCAACTTTGAAACTAAACAA
278 AATTTGAACGAGTTAAAGGACCAACTTTGAAACCAAATAA
** * * * * * *
6283544 AATGAAA-GGAGAAATGCACTTTTCGGCAAACAAAAGCAAAAATATCATGTATCCCAATAGTAAC
1 AATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATTCCAATAGGAAC
* * * * * * * *
6283608 AAACTATTTTGTTTGGTACTTTGTGAAAAGAACTTATTCTTTTACAATGAAGGAAGTTTAAAAGA
66 TATCTATTTTGCTTGGTACTTTATGAAAAGAACTTATACTTTTACGATGAAGGAAGTTTGAACGA
* * * *
6283673 GTTGAAGGACCAACTTTGAAACCAAATAGAATGAAAGGGAGAAATGATTTTTTTGGTAAA-AAAA
131 GTTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAAAAATGCTTTTTTTGGTAAACAAAA
* * * *
6283737 GGCAACAATATCTTGTATTCTAAT-GGGAACTATCTATTTTGCTCGGTAATTTATGAAAAGAACT
196 -GCAACAATATCTTGTATCCTAATAGGGAACTATCTATTTTGCTTGAT-CTTTATGAAAA-AACT
* * * * * * * * *
6283801 TATA-TTTTATGGTGGAGGAAGTATGAATGAGTTGAAGGACCAACTTTGAAACAAAACAA
258 TATACTTTTACGATGGAAGAAATTTGAACGAGTTAAAGGACCAACTTTGAAACCAAATAA
* * * ** * ** * * *
6283860 AAAGAAAGGGCCG-AATGCTTATTTTGGTAAATGAAGGCAATGATATCTTTTATCCCAATGGGAA
1 AATGAAAGGG-AGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATTCCAATAGGAA
* ** * * * * * * **
6283924 CAATCTATTTTGCTTTTTACTTTGTCAAAATAACTTATA-TTTTATGATGGAGGAAGGTTGAATA
65 CTATCTATTTTGCTTGGTACTTTATGAAAAGAACTTATACTTTTACGATGAAGGAAGTTTGAACG
** * * * *
6283988 AAATGAAGGACCAACTTTAAAACCAAACAAAATGAAAGGGAGAAATAC-TTTTTGGGTAAACAAA
130 AGTTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAAAAATGCTTTTTTTGGTAAACAAA
* * ** *
6284052 AGCAACAACATCTTGTATCCTAA-A-GGACACTATCTATTTTGCTTCATACCATGTGAAAAGAAC
195 AGCAACAATATCTTGTATCCTAATAGGGA-ACTATCTATTTTGCTTGAT-CTTTATGAAAA-AAC
* * * * * * *
6284115 TTATACTTTTATGATGGATGAAGTTTGAATGACTTAAAGGACCAACTTTGAAACAAAAAAAA
257 TTATACTTTTACGATGGAAGAAATTTGAACGAGTTAAAGGACCAACTTTGAAAC-CAAATAA
* * * * * ** *
6284177 AATG-AATGGAGAAATGCTTTTTTTGGTAAACAAAAG-TAGAATATCATATATGGCAAT-GGTAC
1 AATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATTCCAATAGGAAC
* * * * * * *
6284239 AAACTATTTTGCTTGGTGCTTTATGAAAAGAACCTATACTTTTATGAT-AGAGGACGTTTGAATG
66 TATCTATTTTGCTTGGTACTTTATGAAAAGAACTTATACTTTTACGATGA-AGGAAGTTTGAACG
* * * * *
6284303 ATTTTAAGGACCAATTTTGAAACCAAACAAAATGAATGGGAGAAAA-GCTTCTTTTGGTAAACAA
130 AGTTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGA-AAAATGCTTTTTTTGGTAAACAA
* * * * *
6284367 AAGCAACAATAT-TGTTTATCAC-CAT-GGCAA-TAAATC-ATTTTGTTTGCTACTTTAT-AAAA
194 AAGCAACAATATCT-TGTATC-CTAATAGGGAACT--ATCTATTTTGCTTGAT-CTTTATGAAAA
* ** * * * * * * *
6284426 GAACCTATACCATTAC-AGTGGAGGAAGTTTGAATGAGTTGAATGACCAACTATG-AACCTAAAC
254 -AACTTATACTTTTACGA-TGGAAGAAATTTGAACGAGTTAAAGGACCAACTTTGAAACC-AAAT
6284489 AA
316 AA
* * * * * * * * *
6284491 ATTGAAAGGGGGAAATACTTTTTTTTGGTAAACAAAAGTAATAATATCATATATCCCAATGGGAA
1 AATGAAAGGGAGAAATGC-TTTTTTTGGTAAACAAAAGCAACAATATCTTGTATTCCAATAGGAA
* * * *
6284556 CTATGC-ATTTTTCTTGATACTTTGTGAAAAGAACTTATA-GTTTACGAT-AGAGGAAGTTTGAA
65 CTAT-CTATTTTGCTTGGTACTTTATGAAAAGAACTTATACTTTTACGATGA-AGGAAGTTTGAA
* ** * ** * * * ** * *
6284618 CGAATTGAAATACCAATTTTGAAATGAAACAACATGAATGGGAGAAGGGCATTCTTTGGTAAACA
128 CGAGTTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAAAAATGCTTTTTTTGGTAAACA
* * * * * * * * * * * *
6284683 AAAGCAATAGTATCATGTGTCCTAAT-GGTAGCAAACTATTTTACTTGGTACTTTGTGAAAAGAT
193 AAAGCAACAATATCTTGTATCCTAATAGGGAACTATCTATTTTGCTTGAT-CTTTATGAAAA-AA
* * * * * ** * *
6284747 CTTATTACTTTTATGATGGGATGAAGTTTTGAACAAGTTGAAGGATAAACTTTGAAATCAAACAA
256 CTTA-TACTTTTACGAT-GGAAGAA-ATTTGAACGAGTTAAAGGACCAACTTTGAAACCAAATAA
* * * *
6284812 AATG-ATGGGTGAAATGCTTTTTTTGGCAAACAAAAGCAACAATATCATGTAT
1 AATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTAT
6284864 GCAAATGAAT
Statistics
Matches: 2693, Mismatches: 660, Indels: 569
0.69 0.17 0.15
Matches are distributed among these distances:
304 14 0.01
305 1 0.00
306 10 0.00
307 8 0.00
308 65 0.02
309 172 0.06
310 16 0.01
311 9 0.00
312 9 0.00
313 1 0.00
314 56 0.02
315 282 0.10
316 555 0.21
317 446 0.17
318 104 0.04
319 54 0.02
320 195 0.07
321 74 0.03
322 14 0.01
323 6 0.00
324 9 0.00
325 10 0.00
326 6 0.00
327 9 0.00
329 4 0.00
330 2 0.00
331 3 0.00
332 2 0.00
333 1 0.00
334 7 0.00
335 7 0.00
336 20 0.01
337 9 0.00
338 13 0.00
339 11 0.00
340 11 0.00
341 17 0.01
342 4 0.00
343 8 0.00
344 7 0.00
345 98 0.04
346 4 0.00
347 5 0.00
348 4 0.00
349 10 0.00
350 10 0.00
351 14 0.01
352 2 0.00
353 10 0.00
354 23 0.01
355 14 0.01
356 14 0.01
357 13 0.00
358 18 0.01
359 6 0.00
360 9 0.00
361 7 0.00
362 5 0.00
363 1 0.00
364 3 0.00
365 5 0.00
366 8 0.00
367 3 0.00
368 4 0.00
369 9 0.00
370 5 0.00
371 2 0.00
372 6 0.00
373 12 0.00
374 11 0.00
375 6 0.00
376 10 0.00
377 1 0.00
379 1 0.00
381 1 0.00
383 1 0.00
384 1 0.00
386 2 0.00
387 1 0.00
389 5 0.00
391 3 0.00
392 5 0.00
393 25 0.01
394 1 0.00
396 1 0.00
397 42 0.02
398 1 0.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (317 bp):
AATGAAAGGGAGAAATGCTTTTTTTGGTAAACAAAAGCAACAATATCTTGTATTCCAATAGGAAC
TATCTATTTTGCTTGGTACTTTATGAAAAGAACTTATACTTTTACGATGAAGGAAGTTTGAACGA
GTTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAAAAATGCTTTTTTTGGTAAACAAAA
GCAACAATATCTTGTATCCTAATAGGGAACTATCTATTTTGCTTGATCTTTATGAAAAAACTTAT
ACTTTTACGATGGAAGAAATTTGAACGAGTTAAAGGACCAACTTTGAAACCAAATAA
Found at i:6282308 original size:157 final size:156
Alignment explanation
Indices: 6282019--6283129 Score: 733
Period size: 158 Copynumber: 7.1 Consensus size: 156
6282009 ACCAAACAAA
* ** * * * * * * *
6282019 AGTACTTTGTGAAAAG-ACTTATGGTTTTACAATCAAGGGAGTCTGAATGAG-TGAAAGACCAAA
1 AGTACTTTGTGAAAAGAACCTATACTTTTACGAT-GAGGAAGTTTGAACGAGTTGAAGGACCAAC
* * *
6282082 TTT-ACAACCAAACTAAATGAATGGGAGAAATGTTTTTTTTTTGGTAAACAAAAGCAATAATACC
65 TTTGA-AACCAAACAAAATGAAAGGGAGAAA-G---TTTTTTTGGTAAACAAAAGCAATAATATC
* *
6282146 ATGTATCCCAATGGTAACAAACTATTTTTCAT
125 ATGTATCCCAATGGTAACAAACTATTTTGCTT
* * * * * *
6282178 GGTACTTTGTGAAAAAAACCTATTCTTTTACGATCGAGGAATTTTGAACGAGTTGTAGGACTAAC
1 AGTACTTTGTGAAAAGAACCTATACTTTTACGAT-GAGGAAGTTTGAACGAGTTGAAGGACCAAC
* * * *
6282243 TTGGAAATCAAACAAAATGAAAGGGAGATAGTTTTTTTGGTAAACAAAAGTAATAATATCATGTA
65 TTTGAAACCAAACAAAATGAAAGGGAGAAAGTTTTTTTGGTAAACAAAAGCAATAATATCATGTA
* * *
6282308 TCCAAAAGGTAGCAAACTATTTTGCTT
130 TCCCAATGGTAACAAACTATTTTGCTT
* * * * *
6282335 AGCACTTTTTCAAAAGAACCTATACTTTTACGATGAAGAAAGTTTGAACAAG-T---GGACCAAC
1 AGTACTTTGTGAAAAGAACCTATACTTTTACGATG-AGGAAGTTTGAACGAGTTGAAGGACCAAC
* * * *
6282396 TATGAAACCAAATAAAATGAAAGGGAGAAATGTTTTTTTTGGTAAACCAAAGCAATGATAT-ATT
65 TTTGAAACCAAACAAAATGAAAGGGAGAAA-G-TTTTTTTGGTAAACAAAAGCAATAATATCA-T
* * *
6282460 GTATCCCAATAGAAACTATATA-TATATATAT-TTT
127 GTATCCCAATGGTAAC-A-A-ACTAT-T-T-TGCTT
* * * * * *
6282494 A-TACTTTGTGAAATGAACATATACTTTTAAGATGGAGGAAGTTTAAATGAGTTAAAGGACCAAC
1 AGTACTTTGTGAAAAGAACCTATACTTTTACGAT-GAGGAAGTTTGAACGAGTTGAAGGACCAAC
* * * ***
6282558 TTTGAAACCAAAAAAAATGAAAAGGTA-AAATTGTTTTTTTGGTAAACAAAAGCAAAAATATTGC
65 TTTGAAACCAAACAAAATG-AAAGGGAGAAA--GTTTTTTTGGTAAACAAAAGCAATAATATCAT
* *
6282622 GTACCCCAATGGTAACAAACTAATTTGCTT
127 GTATCCCAATGGTAACAAACTATTTTGCTT
* * * * *
6282652 AGTACTTTGTGAAAAGAACTTATACCTTTACGATATAGGAAGTTTGAACAAGTTGAAGGATCAAC
1 AGTACTTTGTGAAAAGAACCTATACTTTTACGAT-GAGGAAGTTTGAACGAGTTGAAGGACCAAC
* * * * *
6282717 TTTGAAACCAAACAAAATGAAAGGGAGAAAATATTTTTTGGTAACCAAAAGCAACAATAACTTGT
65 TTTGAAACCAAACAAAATGAAAGGGAGAAAGT-TTTTTTGGTAAACAAAAGCAATAATATCATGT
* * **
6282782 ATTCC------AAC--TCTATTTTATTT
129 ATCCCAATGGTAACAAACTATTTTGCTT
* * * ** * * ** * **
6282802 GGTACTTTGTGAAAAAAACTTATACAATTACAATGTAGAAAGTTTGAAAAAGTTAAAGGATGAAC
1 AGTACTTTGTGAAAAGAACCTATACTTTTACGATG-AGGAAGTTTGAACGAGTTGAAGGACCAAC
* * * * ** * * *
6282867 TTTGAGACCAAATAAAATGACAGAGTTAAATGTTTTTTATGGAAAACGAAAA-CAACAATATCTT
65 TTTGAAACCAAACAAAATGAAAGGGAGAAA-GTTTTTT-TGGTAAAC-AAAAGCAATAATATCAT
* * *
6282931 GTATCCCAATGGGAACTATCTATTTTGCTT
127 GTATCCCAATGGTAACAAACTATTTTGCTT
* ** * * * ** *
6282961 -GATATTTTGTCCAAAGAACATATACTTTTACAATAAAGGAAGTTT-AATAAAG-TGAATGACCA
1 AG-TACTTTGTGAAAAGAACCTATACTTTTACGAT-GAGGAAGTTTGAA-CGAGTTGAAGGACCA
* * ** ***
6283023 ATTTTGAAACCAAACAAAAAGAGTGGGAGAAA-TACTTCTTTTGGTAAACAAAAGCTCCAATATC
63 ACTTTGAAACCAAACAAAATGAAAGGGAGAAAGT--TT-TTTTGGTAAACAAAAGCAATAATATC
* ** *
6283087 GTGTATTTCAATGGTAACAGACTATTTTGCTT
125 ATGTATCCCAATGGTAACAAACTATTTTGCTT
*
6283119 GGTACTTTGTG
1 AGTACTTTGTG
6283130 TATACTTTTA
Statistics
Matches: 749, Mismatches: 157, Indels: 93
0.75 0.16 0.09
Matches are distributed among these distances:
150 91 0.12
151 24 0.03
152 7 0.01
153 32 0.04
154 2 0.00
155 37 0.05
156 4 0.01
157 108 0.14
158 160 0.21
159 146 0.19
160 31 0.04
161 32 0.04
162 67 0.09
163 8 0.01
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (156 bp):
AGTACTTTGTGAAAAGAACCTATACTTTTACGATGAGGAAGTTTGAACGAGTTGAAGGACCAACT
TTGAAACCAAACAAAATGAAAGGGAGAAAGTTTTTTTGGTAAACAAAAGCAATAATATCATGTAT
CCCAATGGTAACAAACTATTTTGCTT
Found at i:6282361 original size:397 final size:396
Alignment explanation
Indices: 6281665--6282383 Score: 853
Period size: 397 Copynumber: 1.8 Consensus size: 396
6281655 GGAGCAAGGT
*
6281665 TGAATGAGATGAAGGACCAAATTTGAAACCAAACAAACTGAAAGGGAAAAATGCTTTTTTTGGTA
1 TGAATGAGATGAAAGACCAAATTTGAAACCAAACAAACTGAAAGGGAAAAATGCTTTTTTTGGTA
* * * * * * * **
6281730 AACAAAAACAACAATATCTTATATCCTAATGGAAACTATCTATTTTGCTTGATCTTTTTGAAATG
66 AACAAAAACAACAATACCATATATCCCAATGGAAACAAACTATTTTGCATGATCTTTGTGAAAAA
* * * * * * *
6281795 AACTTATACTTATATGATGGATGAAATTTGAACAAGTTAAAGGACCAACTTTGAAACCAAATAGA
131 AACCTATACTTATACGATCGAGGAAATTTGAACAAGTTAAAGGACCAACTTGGAAACCAAACAAA
* *
6281860 ATGAAAGGGAGAAATACTTTTGTTTGGTAAAAAAAGCAAAAATATCATGTATTGCAACAGTCAAA
196 ATGAAAGGGAG-AATACTTTTGTTTGGTAAAAAAAGCAAAAATATCATGTATTCCAAAAGTCAAA
* * * * * * *
6281925 GACTATTTTTCTTGGTACTTTGTGAAAAGAACTTATACTTTTAC-AGTGGAGGAAGTTTGAACGA
260 GACTATTTTGCTTAGCACTTTGTCAAAAGAACCTATACTTTTACGA-TGAAGAAAGTTTGAACGA
6281989 GTTGAAGGATTAACTTTAAAACCAAACAAAAGTACTTTGTGAAAAGACTTATGGTTTTACAATCA
324 GTTGAAGGATTAACTTTAAAACCAAACAAAAGTACTTTGTGAAAAGACTTATGGTTTTACAATCA
6282054 AGGGAGTC
389 AGGGAGTC
* * *
6282062 TGAATGAG-TGAAAGACCAAATTT-ACAACCAAACTAAA-TGAATGGGAGAAATGTTTTTTTTTT
1 TGAATGAGATGAAAGACCAAATTTGA-AACCAAAC-AAACTGAAAGGGAAAAATG--CTTTTTTT
* * * * * *
6282124 GGTAAACAAAAGCAATAATACCATGTATCCCAATGGTAACAAACTATTTTTCATGGTACTTTGTG
62 GGTAAACAAAAACAACAATACCATATATCCCAATGGAAACAAACTATTTTGCATGAT-CTTTGTG
* * * * ** * *
6282189 AAAAAAACCTATTCTTTTACGATCGAGGAATTTTGAACGAGTTGTAGGACTAACTTGGAAATCAA
126 AAAAAAACCTATACTTATACGATCGAGGAAATTTGAACAAGTTAAAGGACCAACTTGGAAACCAA
* * *
6282254 ACAAAATGAAAGGGAG-ATAGTTTT-TTTGGTAAACAAAAGTAATAATATCATGTA-TCCAAAAG
191 ACAAAATGAAAGGGAGAATACTTTTGTTTGGTAAA-AAAAGCAAAAATATCATGTATTCCAAAA-
*
6282316 GT-AGCAA-ACTATTTTGCTTAGCACTTTTTCAAAAGAACCTATACTTTTACGATGAAGAAAGTT
254 GTCA--AAGACTATTTTGCTTAGCACTTTGTCAAAAGAACCTATACTTTTACGATGAAGAAAGTT
6282379 TGAAC
317 TGAAC
6282384 AAGTGGACCA
Statistics
Matches: 265, Mismatches: 47, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
395 1 0.00
396 50 0.19
397 89 0.34
398 55 0.21
399 70 0.26
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.30
Consensus pattern (396 bp):
TGAATGAGATGAAAGACCAAATTTGAAACCAAACAAACTGAAAGGGAAAAATGCTTTTTTTGGTA
AACAAAAACAACAATACCATATATCCCAATGGAAACAAACTATTTTGCATGATCTTTGTGAAAAA
AACCTATACTTATACGATCGAGGAAATTTGAACAAGTTAAAGGACCAACTTGGAAACCAAACAAA
ATGAAAGGGAGAATACTTTTGTTTGGTAAAAAAAGCAAAAATATCATGTATTCCAAAAGTCAAAG
ACTATTTTGCTTAGCACTTTGTCAAAAGAACCTATACTTTTACGATGAAGAAAGTTTGAACGAGT
TGAAGGATTAACTTTAAAACCAAACAAAAGTACTTTGTGAAAAGACTTATGGTTTTACAATCAAG
GGAGTC
Found at i:6282519 original size:555 final size:553
Alignment explanation
Indices: 6281561--6282574 Score: 1170
Period size: 555 Copynumber: 1.8 Consensus size: 553
6281551 GGTATAAGGC
* * * * * *
6281561 TTTTTTTGGTAAACAAAAGCAACAATATCTTGTATTCCAATAGGAACTATCCACTTTGCTTGGTA
1 TTTTTTTGGTAAACAAAAGCAACAATACCATGTATCCCAATAGGAACAAACCACTTTGCATGGTA
* * * * *
6281626 CTTTATCAAAAGAACTTATATTTTACGATGGAGCAAGGTTGAATGAGATGAAGGACCAAATTTGA
66 CTTTATCAAAAAAACCTATATTTTACGATCGAGCAAGGTTGAACGAGATGAAGGACCAAATTGGA
* *
6281691 AACCAAACAAACTGAAAGGGAAAAATGCTTTTTTTGGTAAACAAAAACAACAATATCTTATATCC
131 AACCAAACAAAATGAAAGGGAAAAATGCTTTTTTTGGTAAACAAAAACAACAATATCATATATCC
* * * * * * * * *
6281756 TAATGGAAACTATCTATTTTGCTTGATCTTTTTGAAATGAACTTATACTTATATGATGGATGAAA
196 AAAAGGAAACAAACTATTTTGCTTGATCTTTTTCAAAAGAACCTATACTTATACGATGGAAGAAA
* *
6281821 TTTGAACAAGTTAAAGGACCAACTTTGAAACCAAATAGAATGAAAGGGAGAAATACTTTTGTTTG
261 TTTGAACAAGTT--AGGACCAACTATGAAACCAAATAAAATGAAAGGGAGAAATACTTTTGTTTG
** *
6281886 GTAAAAAAAGCAAAAATATCATGTATTGCAACAGTCAAAGACTATTTTTCTTGGTACTTTGTGAA
324 GTAAAAAAAGCAAAAATATCATGTATCCCAACAG-CAAAGACTATTTTTCTTGATACTTTGTGAA
* * * **
6281951 AAGAACTTATACTTTTACAG-TGGAGGAAGTTTGAACGAGTTGAAGGATTAACTTTAAAACCAAA
388 AAGAACATATACTTTTA-AGATGGAGGAAGTTTAAACGAGTTAAAGGACCAACTTTAAAACCAAA
*
6282015 CAAAAGTACTTTGTGAAAAGACTTATGGTTTTACAATCAAGGGAGTCTGAATGAGTGAAAGACCA
452 AAAAAGTACTTTGTGAAAAGACTTATGGTTTTACAATCAAGGGAGTCTGAATGAGTGAAAGACCA
6282080 AATTTACAACCAAACTAAATGAATGGGAGAAATGTTT
517 AATTTACAACCAAACTAAATGAATGGGAGAAATGTTT
* * * *
6282117 TTTTTTTGGTAAACAAAAGCAATAATACCATGTATCCCAAT-GGTAACAAACTATTTTTCATGGT
1 TTTTTTTGGTAAACAAAAGCAACAATACCATGTATCCCAATAGG-AACAAACCACTTTGCATGGT
* * * * ** * * * *
6282181 ACTTTGTGAAAAAAACCTATTCTTTTACGATCGAGGAATTTTGAACGAGTTGTAGGACTAACTTG
65 ACTTTATCAAAAAAACCTA-TATTTTACGATCGAGCAAGGTTGAACGAGATGAAGGACCAAATTG
* * * ** * *
6282246 GAAATCAAACAAAATGAAAGGGAGATA-G-TTTTTTTGGTAAACAAAAGTAATAATATCATGTAT
129 GAAACCAAACAAAATGAAAGGGAAAAATGCTTTTTTTGGTAAACAAAAACAACAATATCATATAT
* * *
6282309 CCAAAAGGTAGCAAACTATTTTGCTTAGCA-CTTTTTCAAAAGAACCTATACTTTTACGAT-GAA
194 CCAAAAGGAAACAAACTATTTTGCTT-G-ATCTTTTTCAAAAGAACCTATACTTATACGATGGAA
* *
6282372 GAAAGTTTGAACAAG-T-GGACCAACTATGAAACCAAATAAAATGAAAGGGAGAAAT-GTTTTTT
257 GAAA-TTTGAACAAGTTAGGACCAACTATGAAACCAAATAAAATGAAAGGGAGAAATACTTTTGT
* ** * * * *
6282434 TTGGTAAACCAAAGCAATGATAT-ATTGTATCCCAATAG-AAACTA-TATATATATATATTTTAT
321 TTGGTAAA-AAAAGCAAAAATATCA-TGTATCCCAACAGCAAA-GACTAT-T-T-T-T-CTTGAT
* *
6282496 ACTTTGTGAAATGAACATATACTTTTAAGATGGAGGAAGTTTAAATGAGTTAAAGGACCAACTTT
378 ACTTTGTGAAAAGAACATATACTTTTAAGATGGAGGAAGTTTAAACGAGTTAAAGGACCAACTTT
*
6282561 GAAACCAAAAAAAA
443 AAAACCAAAAAAAA
6282575 TGAAAAGGTA
Statistics
Matches: 375, Mismatches: 69, Indels: 29
0.79 0.15 0.06
Matches are distributed among these distances:
550 6 0.02
551 16 0.04
552 59 0.16
553 1 0.00
554 3 0.01
555 129 0.34
556 103 0.27
557 58 0.15
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (553 bp):
TTTTTTTGGTAAACAAAAGCAACAATACCATGTATCCCAATAGGAACAAACCACTTTGCATGGTA
CTTTATCAAAAAAACCTATATTTTACGATCGAGCAAGGTTGAACGAGATGAAGGACCAAATTGGA
AACCAAACAAAATGAAAGGGAAAAATGCTTTTTTTGGTAAACAAAAACAACAATATCATATATCC
AAAAGGAAACAAACTATTTTGCTTGATCTTTTTCAAAAGAACCTATACTTATACGATGGAAGAAA
TTTGAACAAGTTAGGACCAACTATGAAACCAAATAAAATGAAAGGGAGAAATACTTTTGTTTGGT
AAAAAAAGCAAAAATATCATGTATCCCAACAGCAAAGACTATTTTTCTTGATACTTTGTGAAAAG
AACATATACTTTTAAGATGGAGGAAGTTTAAACGAGTTAAAGGACCAACTTTAAAACCAAAAAAA
AGTACTTTGTGAAAAGACTTATGGTTTTACAATCAAGGGAGTCTGAATGAGTGAAAGACCAAATT
TACAACCAAACTAAATGAATGGGAGAAATGTTT
Found at i:6282537 original size:158 final size:155
Alignment explanation
Indices: 6282087--6282775 Score: 488
Period size: 157 Copynumber: 4.3 Consensus size: 155
6282077 CCAAATTTAC
** * * * *
6282087 AACCAAACTAAATGAATGGGAGAAATGTTTTTTTTTTGGTAAACAAAAGCAATAATA-CCATGTA
1 AACCAAAAAAAATGAAAGGGAGAAA---TTTTTTTTTGGTAAACCAAAGCAAAAATATTC--GTA
* * * * * * * * * *
6282151 TCCCAATGGTAACAAACTATTTTTCATGGTACTTTGTGAAAAAAACCTATTCTTTTACGATCG-A
61 CCCCAATAGAAACAAACTAATTTGCTTAGTACTTTGTGAAAAGAACATATACTTTTACGAT-GAA
* * * *
6282215 GGAATTTTGAACGAGTTGTAGGACTAACTTGGA
125 GGAAGTTTGAACAAG-T-TAGGACCAACTTTGA
* * * * * * * *
6282248 AATCAAACAAAATGAAAGGGAGATA-GTTTTTTTGGTAAACAAAAGTAATAATA-TCATGTA-TC
1 AACCAAAAAAAATGAAAGGGAGAAATTTTTTTTTGGTAAACCAAAGCAAAAATATTC--GTACCC
* * * * * * * * *
6282310 CAAAAGGTAGCAAACTATTTTGCTTAGCACTTTTTCAAAAGAACCTATACTTTTACGATGAAGAA
64 CAATA-GAAACAAACTAATTTGCTTAGTACTTTGTGAAAAGAACATATACTTTTACGATGAAGGA
*
6282375 AGTTTGAACAAG-T-GGACCAACTATGA
128 AGTTTGAACAAGTTAGGACCAACTTTGA
* * *
6282401 AACCAAATAAAATGAAAGGGAGAAATGTTTTTTTTGGTAAACCAAAGCAATGATATATT-GTATC
1 AACCAAAAAAAATGAAAGGGAGAAAT-TTTTTTTTGGTAAACCAAAGCAA--AAATATTCGTACC
* * *
6282465 CCAATAGAAACTATATA-TATATATAT-TTTA-TACTTTGTGAAATGAACATATACTTTTAAGAT
63 CCAATAGAAAC-A-A-ACTA-AT-T-TGCTTAGTACTTTGTGAAAAGAACATATACTTTTACGAT
* * **
6282527 GGAGGAAGTTTAAATGAGTTAAAGGACCAACTTTGA
122 GAAGGAAGTTTGAACAAGTT--AGGACCAACTTTGA
* *
6282563 AACCAAAAAAAATGAAAAGGTA-AAATTGTTTTTTTGGTAAACAAAAGCAAAAATATTGCGTACC
1 AACCAAAAAAAATG-AAAGGGAGAAATT-TTTTTTTGGTAAACCAAAGCAAAAATATT-CGTACC
* * * *
6282627 CCAATGGTAACAAACTAATTTGCTTAGTACTTTGTGAAAAGAACTTATACCTTTACGAT-ATAGG
63 CCAATAGAAACAAACTAATTTGCTTAGTACTTTGTGAAAAGAACATATACTTTTACGATGA-AGG
*
6282691 AAGTTTGAACAAGTTGAAGGATCAACTTTGA
127 AAGTTTGAACAAGTT--AGGACCAACTTTGA
* * * *
6282722 AACCAAACAAAATGAAAGGGAGAAAATATTTTTTGGT-AACCAAAAGCAACAATA
1 AACCAAAAAAAATGAAAGGGAGAAATTTTTTTTTGGTAAACC-AAAGCAAAAATA
6282776 ACTTGTATTC
Statistics
Matches: 425, Mismatches: 75, Indels: 59
0.76 0.13 0.11
Matches are distributed among these distances:
153 32 0.08
154 1 0.00
155 26 0.06
156 11 0.03
157 99 0.23
158 72 0.17
159 82 0.19
160 10 0.02
161 23 0.05
162 63 0.15
163 6 0.01
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (155 bp):
AACCAAAAAAAATGAAAGGGAGAAATTTTTTTTTGGTAAACCAAAGCAAAAATATTCGTACCCCA
ATAGAAACAAACTAATTTGCTTAGTACTTTGTGAAAAGAACATATACTTTTACGATGAAGGAAGT
TTGAACAAGTTAGGACCAACTTTGA
Found at i:6282669 original size:317 final size:316
Alignment explanation
Indices: 6282180--6282770 Score: 740
Period size: 317 Copynumber: 1.9 Consensus size: 316
6282170 TTTTTCATGG
* * * * * ** *
6282180 TACTTTGTGAAAAAAACCTATTCTTTTACGATCGAGGAATTTTGAACGAGTTGTAGGACTAACTT
1 TACTTTGTGAAAAAAACATATACTTTTAAGATCGAGGAAGTTTAAACGAGTTAAAGGACCAACTT
* * * * * * * *
6282245 GGAAATCAAACAAAATGAAAGGGAGATAGTTTTTTTGGTAAACAAAAGTAATAATATCATGTATC
66 GGAAACCAAAAAAAATGAAAGGAAAATAGTTTTTTTGGTAAACAAAAGCAAAAATATCACGTACC
* * * *
6282310 CAAAAGGTAGCAAACTATTTTGCTTAGCACTTTTTCAAAAGAACCTATACTTTTACGATGA-AGA
131 CAAAAGGTAACAAACTAATTTGCTTAGCACTTTGTCAAAAGAACCTATACCTTTACGAT-ATAGA
* * *
6282374 AAGTTTGAACAAG-T-GGACCAACTATGAAACCAAATAAAATGAAAGGGAGAAATGTTTTTTTTG
195 AAGTTTGAACAAGTTAGGACCAACTATGAAACCAAACAAAATGAAAGGGAGAAA-ATATTTTTTG
6282437 GTAAACC-AAAGCAATGATATATTGTATCCCAATAGAAACTATATATATATATATTTTA
259 GT-AACCAAAAGCAATGATATATTGTATCCCAATAGAAACTATATATATATATATTTTA
** * *
6282495 TACTTTGTGAAATGAACATATACTTTTAAGATGGAGGAAGTTTAAATGAGTTAAAGGACCAACTT
1 TACTTTGTGAAAAAAACATATACTTTTAAGATCGAGGAAGTTTAAACGAGTTAAAGGACCAACTT
* * **
6282560 TGAAACCAAAAAAAATGAAAAGGTAAAATTGTTTTTTTGGTAAACAAAAGCAAAAATATTGCGTA
66 GGAAACCAAAAAAAATG-AAAGG-AAAATAGTTTTTTTGGTAAACAAAAGCAAAAATATCACGTA
* * * * *
6282625 CCCCAATGGTAACAAACTAATTTGCTTAGTACTTTGTGAAAAGAACTTATACCTTTACGATATAG
129 CCCAAAAGGTAACAAACTAATTTGCTTAGCACTTTGTCAAAAGAACCTATACCTTTACGATATAG
* * *
6282690 GAAGTTTGAACAAGTTGAAGGATCAACTTTGAAACCAAACAAAATGAAAGGGAGAAAATATTTTT
194 AAAGTTTGAACAAGTT--AGGACCAACTATGAAACCAAACAAAATGAAAGGGAGAAAATATTTTT
6282755 TGGTAACCAAAAGCAA
257 TGGTAACCAAAAGCAA
6282771 CAATAACTTG
Statistics
Matches: 229, Mismatches: 39, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
315 67 0.29
316 6 0.03
317 99 0.43
318 1 0.00
319 4 0.02
320 17 0.07
321 35 0.15
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.30
Consensus pattern (316 bp):
TACTTTGTGAAAAAAACATATACTTTTAAGATCGAGGAAGTTTAAACGAGTTAAAGGACCAACTT
GGAAACCAAAAAAAATGAAAGGAAAATAGTTTTTTTGGTAAACAAAAGCAAAAATATCACGTACC
CAAAAGGTAACAAACTAATTTGCTTAGCACTTTGTCAAAAGAACCTATACCTTTACGATATAGAA
AGTTTGAACAAGTTAGGACCAACTATGAAACCAAACAAAATGAAAGGGAGAAAATATTTTTTGGT
AACCAAAAGCAATGATATATTGTATCCCAATAGAAACTATATATATATATATTTTA
Found at i:6283639 original size:158 final size:158
Alignment explanation
Indices: 6283209--6284863 Score: 1337
Period size: 158 Copynumber: 10.4 Consensus size: 158
6283199 AAGAACATAT
* *
6283209 ACTTTGAAA-TCAAACAAAATGAATAGGAGAAATGC-TTTTTGTGGTAAACAAAGGCAATAATAT
1 ACTTTGAAACT-AAACAAAATGAA-AGGAGAAATGCATTTTT-TGGTAAACAAAAGCAACAATAT
* * * * *
6283272 CTTGTATTCC-ATCAGGAACTATCTATTTTGCTTGATATTTTGT-AGAAAGAACTTATACTTTTA
63 CATGTATCCCAAT-GGGAACAATCTATTTTGCTTGATACTTTGTGA-AAAGAACTTATACTTTTA
** ** * *
6283335 TGATTAAAAAAGTTTGAATGAGTTAAAGGACCA
126 TGATGGAGGAAGTTTGAATAAGTTGAAGGACCA
* * * * *
6283368 ACTTTGAGACCAAACAAAATGAAATGGAGAAATAC-TTTCTTGGGTAAACAAAAGTAACAATATC
1 ACTTTGAAACTAAACAAAATGAAA-GGAGAAATGCATTT-TTTGGTAAACAAAAGCAACAATATC
* ** * * * *
6283432 TTGTATCCCAATGATAACTATCTATTGTGCTTTATACTTTGTGAAAAGAACTTATACTTTTACGA
64 ATGTATCCCAATGGGAACAATCTATTTTGCTTGATACTTTGTGAAAAGAACTTATACTTTTATGA
*
6283497 TGGAGGAAGTTTGAACAAGTTGAAGGACCA
129 TGGAGGAAGTTTGAATAAGTTGAAGGACCA
* * * *
6283527 ACTTTGAAACTAAACAAAATGAAAGGAGAAATGCACTTTTCGGCAAACAAAAGCAAAAATATCAT
1 ACTTTGAAACTAAACAAAATGAAAGGAGAAATGCATTTTTTGGTAAACAAAAGCAACAATATCAT
* * * * * * **
6283592 GTATCCCAATAGTAACAAACTATTTTGTTTGGTACTTTGTGAAAAGAACTTATTCTTTTACAATG
66 GTATCCCAATGGGAACAATCTATTTTGCTTGATACTTTGTGAAAAGAACTTATACTTTTATGATG
* *
6283657 AAGGAAGTTT-AAAAGAGTTGAAGGACCA
131 GAGGAAGTTTGAATA-AGTTGAAGGACCA
* * *
6283685 ACTTTGAAACCAAATAGAATGAAAGGGAGAAATG-ATTTTTTTGGTAAA-AAAAGGCAACAATAT
1 ACTTTGAAACTAAACAAAATGAAA-GGAGAAATGCA-TTTTTTGGTAAACAAAA-GCAACAATAT
* * * * * * * *
6283748 CTTGTATTCTAATGGGAACTATCTATTTTGCTCGGTAATTTATGAAAAGAACTTATA-TTTTATG
63 CATGTATCCCAATGGGAACAATCTATTTTGCTTGATACTTTGTGAAAAGAACTTATACTTTTATG
* * *
6283812 GTGGAGGAAGTATGAATGAGTTGAAGGACCA
128 ATGGAGGAAGTTTGAATAAGTTGAAGGACCA
* * * ** * **
6283843 ACTTTGAAACAAAACAAAAAGAAAGG-GCCGAATGC-TTATTTTGGTAAATGAAGGCAATGATAT
1 ACTTTGAAACTAAACAAAATGAAAGGAG--AAATGCATT-TTTTGGTAAACAAAAGCAACAATAT
* * ** * *
6283906 CTTTTATCCCAATGGGAACAATCTATTTTGCTTTTTACTTTGTCAAAATAACTTATA-TTTTATG
63 CATGTATCCCAATGGGAACAATCTATTTTGCTTGATACTTTGTGAAAAGAACTTATACTTTTATG
* **
6283970 ATGGAGGAAGGTTGAATAAAATGAAGGACCA
128 ATGGAGGAAGTTTGAATAAGTTGAAGGACCA
* * * * * *
6284001 ACTTTAAAACCAAACAAAATGAAAGGGAGAAATAC-TTTTTGGGTAAACAAAAGCAACAACATCT
1 ACTTTGAAACTAAACAAAATGAAA-GGAGAAATGCATTTTTTGGTAAACAAAAGCAACAATATCA
* * * * **
6284065 TGTATCCTAA-AGGACACTATCTATTTTGCTTCATACCATGTGAAAAGAACTTATACTTTTATGA
65 TGTATCCCAATGGGA-ACAATCTATTTTGCTTGATACTTTGTGAAAAGAACTTATACTTTTATGA
* * * *
6284129 TGGATGAAGTTTGAATGACTTAAAGGACCA
129 TGGAGGAAGTTTGAATAAGTTGAAGGACCA
* * * * * *
6284159 ACTTTGAAACAAAAAAAAAATGAATGGAGAAATGCTTTTTTTGGTAAACAAAAG-TAGAATATCA
1 ACTTTGAAAC-TAAACAAAATGAAAGGAGAAATGCATTTTTTGGTAAACAAAAGCAACAATATCA
* ** * * * * * *
6284223 TATATGGCAAT-GGTACAAACTATTTTGCTTGGTGCTTTATGAAAAGAACCTATACTTTTATGAT
65 TGTATCCCAATGGGAACAATCTATTTTGCTTGATACTTTGTGAAAAGAACTTATACTTTTATGAT
* * * * *
6284287 AGAGGACGTTTGAATGATTTTAAGGACCA
130 GGAGGAAGTTTGAATAAGTTGAAGGACCA
* * * * *
6284316 ATTTTGAAACCAAACAAAATGAATGGGAGAAAAGC-TTCTTTTGGTAAACAAAAGCAACAATATT
1 ACTTTGAAACTAAACAAAATGAA-AGGAGAAATGCATT-TTTTGGTAAACAAAAGCAACAATATC
* * * * * * * * **
6284380 GTTTATCACC-ATGGCAATAAATC-ATTTTGTTTGCTACTTTAT-AAAAGAACCTATACCATTA-
64 ATGTATC-CCAATGGGAA-CAATCTATTTTGCTTGATACTTTGTGAAAAGAACTTATACTTTTAT
* * *
6284441 CAGTGGAGGAAGTTTGAATGAGTTGAATGACCA
127 GA-TGGAGGAAGTTTGAATAAGTTGAAGGACCA
* * * * * * * *
6284474 ACTATGAACCTAAACAAATTGAAAGGGGGAAATACTTTTTTTTGGTAAACAAAAGTAATAATATC
1 ACTTTGAAACTAAACAAAATGAAA-GGAGAAATGC-ATTTTTTGGTAAACAAAAGCAACAATATC
* * * * *
6284539 ATATATCCCAATGGGAACTATGC-ATTTTTCTTGATACTTTGTGAAAAGAACTTATA-GTTTACG
64 ATGTATCCCAATGGGAACAAT-CTATTTTGCTTGATACTTTGTGAAAAGAACTTATACTTTTATG
* * **
6284602 ATAGAGGAAGTTTGAACGAA-TTGAAATACCA
128 ATGGAGGAAGTTTGAA-TAAGTTGAAGGACCA
* * * ** * * *
6284633 ATTTTGAAA-TGAAACAACATGAATGGGAGAAGGGCATTCTTTGGTAAACAAAAGCAATAGTATC
1 ACTTTGAAACT-AAACAAAATGAA-AGGAGAAATGCATTTTTTGGTAAACAAAAGCAACAATATC
* * * * * * * *
6284697 ATGTGTCCTAATGGTAGCAAACTATTTTACTTGGTACTTTGTGAAAAGATCTTATTACTTTTATG
64 ATGTATCCCAATGGGAACAATCTATTTTGCTTGATACTTTGTGAAAAGAACTTA-TACTTTTATG
* * **
6284762 ATGGGATGAAGTTTTGAACAAGTTGAAGGATAA
128 AT-GGAGGAAG-TTTGAATAAGTTGAAGGACCA
** * * *
6284795 ACTTTGAAA-TCAAACAAAATGATGGGTGAAATGCTTTTTTTGGCAAACAAAAGCAACAATATCA
1 ACTTTGAAACT-AAACAAAATGAAAGGAGAAATGCATTTTTTGGTAAACAAAAGCAACAATATCA
6284859 TGTAT
65 TGTAT
6284864 GCAAATGAAT
Statistics
Matches: 1195, Mismatches: 255, Indels: 90
0.78 0.17 0.06
Matches are distributed among these distances:
156 17 0.01
157 169 0.14
158 525 0.44
159 375 0.31
160 32 0.03
161 45 0.04
162 32 0.03
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (158 bp):
ACTTTGAAACTAAACAAAATGAAAGGAGAAATGCATTTTTTGGTAAACAAAAGCAACAATATCAT
GTATCCCAATGGGAACAATCTATTTTGCTTGATACTTTGTGAAAAGAACTTATACTTTTATGATG
GAGGAAGTTTGAATAAGTTGAAGGACCA
Found at i:6283916 original size:317 final size:315
Alignment explanation
Indices: 6283209--6284863 Score: 1363
Period size: 317 Copynumber: 5.2 Consensus size: 315
6283199 AAGAACATAT
* *
6283209 ACTTTGAAATC-AAACAAAATGAATAGGAGAAATGCTT-TTTGTGGTAAACAAAGGCAATAATAT
1 ACTTTGAAA-CAAAACAAAAAGAA-AGGAGAAATGCTTATTT-TGGTAAACAAAAGCAATAATAT
* * * * * *
6283272 CTTGTATTCC-ATCAGGAACTATCTATTTTGCTTGATATTTTGT-AGAAAGAACTTATACTTTTA
63 CATGTATCCCAAT-AGGAACAAACTATTTTGCTTGGTACTTTGTGA-AAAGAACTTATACTTTTA
* ** * * * * *
6283335 TGATTAAAAAAGTTTGAATGAGTTAAAGGACCAACTTTGAGACCAAACAAAATGAAATGGAGAAA
126 TGATGAAGGAAGTTTAAAAGAGTTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAA
* * * ** * *
6283400 TACTTTCTTGGGTAAACAAAAGTAACAATATCTTGTATCCCAATGATAACTATCTATTGTGCTTT
191 TA-TTTTTTGGGTAAACAAAAGCAACAATATCTTGTATCCTAATGGGAACTATCTATTTTGC-TC
* **
6283465 ATACTTTGTGAAAAGAACTTATACTTTTACGATGGAGGAAGTTTGAACAAGTTGAAGGACCA
254 ATACTTTGTGAAAAGAACTTATACTTTTATGATGGAGGAAGTTTGAATGAGTTGAAGGACCA
* * * *
6283527 ACTTTGAAACTAAACAAAATGAAAGGAGAAATGC--ACTTTTCGGCAAACAAAAGCAAAAATATC
1 ACTTTGAAACAAAACAAAAAGAAAGGAGAAATGCTTA-TTTT-GGTAAACAAAAGCAATAATATC
* * * **
6283590 ATGTATCCCAATAGTAACAAACTATTTTGTTTGGTACTTTGTGAAAAGAACTTATTCTTTTACAA
64 ATGTATCCCAATAGGAACAAACTATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTTTTATGA
* *
6283655 TGAAGGAAGTTTAAAAGAGTTGAAGGACCAACTTTGAAACCAAATAGAATGAAAGGGAGAAATGA
129 TGAAGGAAGTTTAAAAGAGTTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAAT-A
* * *
6283720 TTTTTTTGGTAAA-AAAAGGCAACAATATCTTGTATTCTAATGGGAACTATCTATTTTGCTCGGT
193 TTTTTTGGGTAAACAAAA-GCAACAATATCTTGTATCCTAATGGGAACTATCTATTTTGCTC-AT
* * * *
6283784 AATTTATGAAAAGAACTTATA-TTTTATGGTGGAGGAAGTATGAATGAGTTGAAGGACCA
256 ACTTTGTGAAAAGAACTTATACTTTTATGATGGAGGAAGTTTGAATGAGTTGAAGGACCA
* ** * *
6283843 ACTTTGAAACAAAACAAAAAGAAAGG-GCCGAATGCTTATTTTGGTAAATGAAGGCAATGATATC
1 ACTTTGAAACAAAACAAAAAGAAAGGAG--AAATGCTTATTTTGGTAAACAAAAGCAATAATATC
* * * * ** * *
6283907 TTTTATCCCAATGGGAACAATCTATTTTGCTTTTTACTTTGTCAAAATAACTTATA-TTTTATGA
64 ATGTATCCCAATAGGAACAAACTATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTTTTATGA
* * * *
6283971 TGGAGGAAGGTTGAATAA-A-ATGAAGGACCAACTTTAAAACCAAACAAAATGAAAGGGAGAAAT
129 TGAAGGAA-GTTTAA-AAGAGTTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAAT
* * *
6284034 ACTTTTTGGGTAAACAAAAGCAACAACATCTTGTATCCTAA-AGGACACTATCTATTTTGCTTCA
192 ATTTTTTGGGTAAACAAAAGCAACAATATCTTGTATCCTAATGGGA-ACTATCTATTTTGC-TCA
** * * *
6284098 TACCATGTGAAAAGAACTTATACTTTTATGATGGATGAAGTTTGAATGACTTAAAGGACCA
255 TACTTTGTGAAAAGAACTTATACTTTTATGATGGAGGAAGTTTGAATGAGTTGAAGGACCA
* * * * *
6284159 ACTTTGAAACAAAAAAAAAATGAATGGAGAAATGCTTTTTTTGGTAAACAAAAG-TAGAATATCA
1 ACTTTGAAACAAAACAAAAA-GAAAGGAGAAATGCTTATTTTGGTAAACAAAAGCAATAATATCA
* ** * * * *
6284223 TATATGGCAAT-GGTACAAACTATTTTGCTTGGTGCTTTATGAAAAGAACCTATACTTTTATGAT
65 TGTATCCCAATAGGAACAAACTATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTTTTATGAT
* * * * * * *
6284287 -AGAGGACGTTTGAATGATTTTAAGGACCAATTTTGAAACCAAACAAAATGAATGGGAGAAA-AG
130 GA-AGGAAGTTTAAAAGAGTTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATA-
* * *
6284350 CTTCTTTT-GGTAAACAAAAGCAACAATAT-TGTTTATCAC-CATGGCAA-TAAATC-ATTTTGT
193 -TT-TTTTGGGTAAACAAAAGCAACAATATCT-TGTATC-CTAATGGGAACT--ATCTATTTTG-
* * * ** * *
6284410 TTGC-TACTTTAT-AAAAGAACCTATACCATTA-CAGTGGAGGAAGTTTGAATGAGTTGAATGAC
251 CT-CATACTTTGTGAAAAGAACTTATACTTTTATGA-TGGAGGAAGTTTGAATGAGTTGAAGGAC
6284472 CA
314 CA
* * * ** * * * *
6284474 ACTATGAACCTAAACAAATTGAAAGGGGGAAATACTTTTTTTTGGTAAACAAAAGTAATAATATC
1 ACTTTGAAACAAAACAAAAAGAAA-GGAGAAATGC-TTATTTTGGTAAACAAAAGCAATAATATC
* * ** * * * *
6284539 ATATATCCCAATGGGAACTATGC-ATTTTTCTTGATACTTTGTGAAAAGAACTTATA-GTTTACG
64 ATGTATCCCAATAGGAAC-AAACTATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTTTTATG
* * * ** * ** * *
6284602 AT-AGAGGAAGTTTGAACGAATTGAAATACCAATTTTGAAATGAAACAACATGAATGGGAGAAGG
128 ATGA-AGGAAGTTTAAAAGAGTTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAA--
** * * * * * * * * * * *
6284666 GCATTCTTT-GGTAAACAAAAGCAATAGTATCATGTGTCCTAATGGTAGCAAACTATTTTACTTG
190 ATATTTTTTGGGTAAACAAAAGCAACAATATCTTGTATCCTAATGGGAACTATCTATTTTGC-TC
* * * ** **
6284730 GTACTTTGTGAAAAGATCTTATTACTTTTATGATGGGATGAAGTTTTGAACAAGTTGAAGGATAA
254 ATACTTTGTGAAAAGAACTTA-TACTTTTATGAT-GGAGGAAG-TTTGAATGAGTTGAAGGACCA
* ** * * * *
6284795 ACTTTGAAATC-AAACAAAATGATGGGTGAAATGCTTTTTTTGGCAAACAAAAGCAACAATATCA
1 ACTTTGAAA-CAAAACAAAAAGAAAGGAGAAATGCTTATTTTGGTAAACAAAAGCAATAATATCA
6284859 TGTAT
65 TGTAT
6284864 GCAAATGAAT
Statistics
Matches: 1076, Mismatches: 205, Indels: 111
0.77 0.15 0.08
Matches are distributed among these distances:
313 1 0.00
314 47 0.04
315 196 0.18
316 256 0.24
317 409 0.38
318 75 0.07
319 41 0.04
320 17 0.02
321 33 0.03
322 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (315 bp):
ACTTTGAAACAAAACAAAAAGAAAGGAGAAATGCTTATTTTGGTAAACAAAAGCAATAATATCAT
GTATCCCAATAGGAACAAACTATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTTTTATGATG
AAGGAAGTTTAAAAGAGTTGAAGGACCAACTTTGAAACCAAACAAAATGAAAGGGAGAAATATTT
TTTGGGTAAACAAAAGCAACAATATCTTGTATCCTAATGGGAACTATCTATTTTGCTCATACTTT
GTGAAAAGAACTTATACTTTTATGATGGAGGAAGTTTGAATGAGTTGAAGGACCA
Found at i:6285446 original size:159 final size:158
Alignment explanation
Indices: 6284936--6286425 Score: 1021
Period size: 159 Copynumber: 9.5 Consensus size: 158
6284926 AGGAACTATA
* * ** * * *
6284936 TATTTTGCTTTGTAGTTTGTGAAAA-AACTTGCACTCTTATAATGGAGGAAGTTTGAAAGCA-TT
1 TATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTTTTATGATGGAGGAAGTTTGAACG-AGTT
* * * * * * * **
6284999 GCAGAATCAATTTTGAAGCCAAACAAAATGAATGGGAGAAATGTTTTTTCTTTTTGGCAAACGAA
65 GAAGGACCAACTTTGAAACCAAACAAAATGAATGGGAGAAATG---CTT-TTTTT-GTAAATAAA
* * * * *
6285064 AGTAACAATATCATTTATCCCAGTCGTAACAAAAA
125 AGCAACAATATCATGTATCCCAATGGTAAC-AAAC
* ** * * ** * *
6285099 TAATTTTGCTTGGTACTTTTTGAAATTAACTTAGACTTTTATGATGCAAAAAGTTTAAATGAGTT
1 T-ATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTTTTATGATGGAGGAAGTTTGAACGAGTT
* * * * * * * * * **** *
6285164 AAAAGACCAATTTTGAAGCAAAATAAAATGAAAGAAAGAAAAAAAAATTTTTTG--AATGAAAGC
65 GAAGGACCAACTTTGAAACCAAACAAAATGAATG--GGAGAAATGCTTTTTTTGTAAATAAAAGC
*
6285227 AACAATATCATGTGTCCCAATGGTAACAAAC
128 AACAATATCATGTATCCCAATGGTAACAAAC
* * * * * * *
6285258 TATTTTCCTTGATACCTTGTGAAAAGAACTTATACTTTTTTGATAGAGGAAGTTTGAATGAGTTA
1 TATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTTTTATGATGGAGGAAGTTTGAACGAGTTG
** * * * * * *
6285323 AAGGATGAACTTTGAAAGCAAATAGAATAAAAGGCAGAAATGCTTTTTTTGTCAAATAAAAGCAA
66 AAGGACCAACTTTGAAACCAAACAAAATGAATGGGAGAAATGCTTTTTTTGT-AAATAAAAGCAA
** * * *
6285388 CAATATCATGTATCCTGATGGAAACTATC
130 CAATATCATGTATCCCAATGGTAACAAAC
* * **
6285417 TATTTTGCTTGGTACTATGTGAAAAGAACTTATACTTTTA-CATTGGAGGAAGTTTGAATAAGTT
1 TATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTTTTATGA-TGGAGGAAGTTTGAACGAGTT
* *
6285481 GAAGGACCAACTTTTG-AACCAAAGAAAAT--ATAGGGAGAAATG---ATTTT-T---T------
65 GAAGGACCAAC-TTTGAAACCAAACAAAATGAAT-GGGAGAAATGCTTTTTTTGTAAATAAAAGC
* * * *
6285530 ----ATATCTTGTATCCCAATGGTGACTATC
128 AACAATATCATGTATCCCAATGGTAACAAAC
* * *
6285557 TATTTTGCTTGGTACTGTGTGAAAA-ATCTTATACTTTTATGATGGAGGAAGTTTGAATGAGTTG
1 TATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTTTTATGATGGAGGAAGTTTGAACGAGTTG
* *** * ** ** *
6285621 AAGGAACAA-TTTGAAATTGAACAAAATTAAAAGGTTAAATGCTTTTCTTGGT-AATCAAAAGCA
66 AAGGACCAACTTTGAAACCAAACAAAATGAATGGGAGAAATGCTTTT-TTTGTAAAT-AAAAGCA
*
6285684 ACAATATCATGTATTCCAATGGTAACAAAC
129 ACAATATCATGTATCCCAATGGTAACAAAC
* ** * * *
6285714 TACTTTT-CTTGGTACTTTGTG---AGAA--TAAACTTTTACAATGGAGAAAGTTTGTACAAGTT
1 TA-TTTTGCTTGGTACTTTGTGAAAAGAACTTATACTTTTATGATGGAGGAAGTTTGAACGAGTT
* * * * * ** **
6285773 GTAGGACCAACTTTGAAACCAAGCAAAATGTATGGGACAAATACTTTTTGGGTAAA-CGAAGCAA
65 GAAGGACCAACTTTGAAACCAAACAAAATGAATGGGAGAAATGCTTTTTTTGTAAATAAAAGCAA
* * * *
6285837 TAATATCATGGATCCTAAAGGTAACAAAC
130 CAATATCATGTATCCCAATGGTAACAAAC
** * * * ** *
6285866 TATTTTGCTTGGTACTTCATCAAAAGAACCTATACTTTTAGGACAGAGGAAATTTGAACGAGTTG
1 TATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTTTTATGATGGAGGAAGTTTGAACGAGTTG
** ** * *
6285931 -AGAGATGAA-TTCT-AGAACCAAGTAAAATGAATGGGAGAAATGCTTTTTTTGGCAAACAAAAG
66 AAG-GACCAACTT-TGA-AACCAAACAAAATGAATGGGAGAAATGCTTTTTTT-GTAAATAAAAG
* * *
6285993 CAACAATATTATGTACCCCAATGGTTACAAAC
127 CAACAATATCATGTATCCCAATGGTAACAAAC
* * * * * ** * *
6286025 TACTTTGCTAGGTATTTTATGAAAAGAACTTATAATTTTATGATGGATAAAGTTTGAATGAATTG
1 TATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTTTTATGATGGAGGAAGTTTGAACGAGTTG
* * * *
6286090 AATGACCAATTTTGAAACCAAAGAAAATGAATGGGAGAAATGCTTTTTTTGCTAAACAAAAGCAA
66 AAGGACCAACTTTGAAACCAAACAAAATGAATGGGAGAAATGCTTTTTTTG-TAAATAAAAGCAA
** * * * *
6286155 CAATATTGTGTATGCAAATGAG-AACTATC
130 CAATATCATGTATCCCAATG-GTAACAAAC
* * * *
6286184 TATTTTGCTTGGTACTTTGAGAAAA-ATACTTATACATTTATGATTGAGGAAGTTTGAACCAGTT
1 TATTTTGCTTGGTACTTTGTGAAAAGA-ACTTATACTTTTATGATGGAGGAAGTTTGAACGAGTT
* * *
6286248 GGTA-GACCAACTTTGAAACCAAACATAATGAATGGGAGAAATG-TGTTTTTTGGTAAATAAAAA
65 -GAAGGACCAACTTTGAAACCAAACAAAATGAATGGGAGAAATGCT-TTTTTT-GTAAATAAAAG
* ** *
6286311 CAATAATATTGTATATCCCAATGGTAACAAAC
127 CAACAATATCATGTATCCCAATGGTAACAAAC
* *
6286343 TATTTTGCTTGGTAATTTGTGAAAAGAACTTATACTTTTATGATGGAAGAAGTTTGAACGAGTTG
1 TATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTTTTATGATGGAGGAAGTTTGAACGAGTTG
*
6286408 ATGGACCAACTTTGAAAC
66 AAGGACCAACTTTGAAAC
6286426 GAAATGAAAT
Statistics
Matches: 1034, Mismatches: 233, Indels: 124
0.74 0.17 0.09
Matches are distributed among these distances:
137 4 0.00
138 9 0.01
139 49 0.05
140 48 0.05
142 1 0.00
143 2 0.00
144 1 0.00
146 1 0.00
150 1 0.00
151 4 0.00
152 43 0.04
153 39 0.04
154 30 0.03
155 9 0.01
156 16 0.02
157 98 0.09
158 98 0.09
159 451 0.44
160 43 0.04
162 1 0.00
163 6 0.01
164 22 0.02
165 53 0.05
167 5 0.00
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (158 bp):
TATTTTGCTTGGTACTTTGTGAAAAGAACTTATACTTTTATGATGGAGGAAGTTTGAACGAGTTG
AAGGACCAACTTTGAAACCAAACAAAATGAATGGGAGAAATGCTTTTTTTGTAAATAAAAGCAAC
AATATCATGTATCCCAATGGTAACAAAC
Found at i:6310424 original size:44 final size:45
Alignment explanation
Indices: 6310375--6310468 Score: 111
Period size: 44 Copynumber: 2.1 Consensus size: 45
6310365 ATTAAGGCAT
* * * *
6310375 GTGCCTATAGC-AAGGGCTAGCATGTGCCAATGGTAGT-GAGGTAA
1 GTGCCTATA-CTAAAGGCCAGCATATACCAATGGTAGTCGAGGTAA
* *
6310419 GTGCCTATACTAAAGGCCAGCTTATACCAATGGTGGTCGAGGTAA
1 GTGCCTATACTAAAGGCCAGCATATACCAATGGTAGTCGAGGTAA
6310464 GTGCC
1 GTGCC
6310469 CTTACCAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
43 1 0.02
44 29 0.69
45 12 0.29
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (45 bp):
GTGCCTATACTAAAGGCCAGCATATACCAATGGTAGTCGAGGTAA
Found at i:6349396 original size:45 final size:45
Alignment explanation
Indices: 6349331--6349433 Score: 143
Period size: 45 Copynumber: 2.3 Consensus size: 45
6349321 GTATGTACCT
* * *
6349331 ATACCAAGGGCTAGCATGTGCCAATGGTGGTCAAGGTAAATGCCC
1 ATACCAAAGGCCAGCATGTGCCAATGGTGGTCAAGGCAAATGCCC
* ** *
6349376 ATACCAAAGGCCAGCTTGTGCCAATGGTGGTTGAGGCAAGTGCCC
1 ATACCAAAGGCCAGCATGTGCCAATGGTGGTCAAGGCAAATGCCC
6349421 ATACCAAAGGCCA
1 ATACCAAAGGCCA
6349434 ACTTATACTG
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 51 1.00
ACGTcount: A:0.29, C:0.24, G:0.28, T:0.18
Consensus pattern (45 bp):
ATACCAAAGGCCAGCATGTGCCAATGGTGGTCAAGGCAAATGCCC
Found at i:6349457 original size:45 final size:45
Alignment explanation
Indices: 6349351--6349458 Score: 117
Period size: 45 Copynumber: 2.4 Consensus size: 45
6349341 CTAGCATGTG
* * * * * * *
6349351 CCAATGGTGGTCAAGGTAAATGCCCATACCAAAGGCCAGCTTGTG
1 CCAATGATGGTCGAGGCAAGTGCCCATACCAAAGGCCAACTTATA
* *
6349396 CCAATGGTGGTTGAGGCAAGTGCCCATACCAAAGGCCAACTTATA
1 CCAATGATGGTCGAGGCAAGTGCCCATACCAAAGGCCAACTTATA
**
6349441 CTGATGATGGTCGAGGCA
1 CCAATGATGGTCGAGGCA
6349459 TATGTCTACA
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 52 1.00
ACGTcount: A:0.29, C:0.23, G:0.28, T:0.20
Consensus pattern (45 bp):
CCAATGATGGTCGAGGCAAGTGCCCATACCAAAGGCCAACTTATA
Found at i:6359780 original size:46 final size:46
Alignment explanation
Indices: 6359727--6359983 Score: 206
Period size: 44 Copynumber: 5.7 Consensus size: 46
6359717 ACACTTTAAG
** * * *
6359727 AAATAAATAAAGTTGTTTTAAGCAGGGGCTCAACAACTTCTGAAAA
1 AAATAAATAAAACTCTTTTAAACAGAGGCTCAACAACTTCTGAAAA
**
6359773 AAATAAATAAAACTCTTTTAAACAGAGGCTCAATGACTTCTGAAAA
1 AAATAAATAAAACTCTTTTAAACAGAGGCTCAACAACTTCTGAAAA
** * * * * * *
6359819 AAATTAAATAAGTCTCCTCTAAATAAAGGCTCGACGACTTCTG--AA
1 AAA-TAAATAAAACTCTTTTAAACAGAGGCTCAACAACTTCTGAAAA
* * ** * * *
6359864 AAATAAATAAAGCTCTTCTAAGTAGAAGCTTAACAAGTTCT--AAA
1 AAATAAATAAAACTCTTTTAAACAGAGGCTCAACAACTTCTGAAAA
* *
6359908 AAATAAATAAAACTCCTTTAAGA-AGAGGCTCAACAACTTTTG---A
1 AAATAAATAAAACTCTTTTAA-ACAGAGGCTCAACAACTTCTGAAAA
* *
6359951 AAATAAATAAAGCTCTTCTAAACAGAGGCTCAA
1 AAATAAATAAAACTCTTTTAAACAGAGGCTCAA
6359984 TGACTTTTAA
Statistics
Matches: 170, Mismatches: 36, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
42 1 0.01
43 29 0.17
44 62 0.36
45 5 0.03
46 42 0.25
47 31 0.18
ACGTcount: A:0.46, C:0.16, G:0.13, T:0.26
Consensus pattern (46 bp):
AAATAAATAAAACTCTTTTAAACAGAGGCTCAACAACTTCTGAAAA
Found at i:6359849 original size:47 final size:46
Alignment explanation
Indices: 6359753--6360019 Score: 171
Period size: 44 Copynumber: 6.0 Consensus size: 46
6359743 TTTAAGCAGG
* * * *
6359753 GGCTCAACAACTTCTGAAAAAAATAAATAAAACTCTTTTAAACAGA
1 GGCTCAACGACTTCTGAAAAAAATAAATAAAACTCCTCTAAACAAA
* ** *
6359799 GGCTCAATGACTTCTGAAAAAAATTAAATAAGTCTCCTCTAAATAAA
1 GGCTCAACGACTTCTGAAAAAAA-TAAATAAAACTCCTCTAAACAAA
* * * **
6359846 GGCTCGACGACTTCTG--AAAAATAAATAAAGCTCTTCTAAGTAGAA
1 GGCTCAACGACTTCTGAAAAAAATAAATAAAACTCCTCTAAACA-AA
* * * * *
6359891 -GCTTAACAAGTTCT--AAAAAATAAATAAAACTCCTTTAAGA-AGA
1 GGCTCAACGACTTCTGAAAAAAATAAATAAAACTCCTCTAA-ACAAA
* * * * *
6359934 GGCTCAACAACTTTTG---AAAATAAATAAAGCTCTTCTAAACAGA
1 GGCTCAACGACTTCTGAAAAAAATAAATAAAACTCCTCTAAACAAA
* * * * *
6359977 GGCTCAATGACTT-T--TAAAAAGAAATAAAGCTCCTATAAACAAA
1 GGCTCAACGACTTCTGAAAAAAATAAATAAAACTCCTCTAAACAAA
6360020 TAAATAAGGC
Statistics
Matches: 177, Mismatches: 35, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
42 2 0.01
43 57 0.32
44 59 0.33
45 7 0.04
46 21 0.12
47 31 0.18
ACGTcount: A:0.46, C:0.17, G:0.12, T:0.25
Consensus pattern (46 bp):
GGCTCAACGACTTCTGAAAAAAATAAATAAAACTCCTCTAAACAAA
Found at i:6359910 original size:44 final size:44
Alignment explanation
Indices: 6359719--6360008 Score: 166
Period size: 44 Copynumber: 6.5 Consensus size: 44
6359709 GAGGTTTAAC
* * * * * **
6359719 ACTT-TAAGAAATAAATAAAGTTGTTTTAAGCAGGGGCTCAACA
1 ACTTCTAAAAAATAAATAAAGCTCTTCTAAGAAGAAGCTCAACA
* * * **
6359762 ACTTCTGAAAAAAATAAATAAAACTCTTTTAA-ACAGAGGCTCAATG
1 ACTTCT--AAAAAATAAATAAAGCTCTTCTAAGA-AGAAGCTCAACA
* * *
6359808 ACTTCTGAAAAAAATTAAAT-AAGTCTCCTCTAA-ATA-AAGGCTCGACG
1 ACTTCT--AAAAAA-TAAATAAAG-CTCTTCTAAGA-AGAA-GCTCAACA
* * *
6359855 ACTTCTGAAAAATAAATAAAGCTCTTCTAAGTAGAAGCTTAACA
1 ACTTCTAAAAAATAAATAAAGCTCTTCTAAGAAGAAGCTCAACA
* * *
6359899 AGTTCTAAAAAATAAATAAAACTCCTT-TAAGAAGAGGCTCAACA
1 ACTTCTAAAAAATAAATAAAGCT-CTTCTAAGAAGAAGCTCAACA
** * **
6359943 ACTT-TTGAAAATAAATAAAGCTCTTCTAA-ACAGAGGCTCAATG
1 ACTTCTAAAAAATAAATAAAGCTCTTCTAAGA-AGAAGCTCAACA
* *
6359986 ACTT-TTAAAAAGAAATAAAGCTC
1 ACTTCTAAAAAATAAATAAAGCTC
6360009 CTATAAACAA
Statistics
Matches: 199, Mismatches: 35, Indels: 26
0.77 0.13 0.10
Matches are distributed among these distances:
42 4 0.02
43 53 0.27
44 57 0.29
45 13 0.07
46 46 0.23
47 26 0.13
ACGTcount: A:0.46, C:0.16, G:0.13, T:0.26
Consensus pattern (44 bp):
ACTTCTAAAAAATAAATAAAGCTCTTCTAAGAAGAAGCTCAACA
Found at i:6359978 original size:43 final size:43
Alignment explanation
Indices: 6359727--6360017 Score: 192
Period size: 43 Copynumber: 6.6 Consensus size: 43
6359717 ACACTTTAAG
* * * * *
6359727 AAATAAATAAAGTTGTTTTAAGCAGGGGCTCAACAACTTCTGAAAA
1 AAATAAATAAAGCTCTTCTAAACAGAGGCTCAACAACTTCTG---A
* * **
6359773 AAATAAATAAAACTCTTTTAAACAGAGGCTCAATGACTTCTGA
1 AAATAAATAAAGCTCTTCTAAACAGAGGCTCAACAACTTCTGA
* * * * *
6359816 AAA-AAATTAAATAAGTCTCCTCTAAATAAAGGCTCGACGACTTCTGAA
1 AAATAAA-T--A-AAG-CTCTTCTAAACAGAGGCTCAACAACTTCTG-A
** * * * *
6359864 AAATAAATAAAGCTCTTCTAAGTAGAAGCTTAACAAGTTCTAAA
1 AAATAAATAAAGCTCTTCTAAACAGAGGCTCAACAACTTCT-GA
* *
6359908 AAATAAATAAAACTCCTT-TAAGA-AGAGGCTCAACAACTTTTGA
1 AAATAAATAAAGCT-CTTCTAA-ACAGAGGCTCAACAACTTCTGA
** * *
6359951 AAATAAATAAAGCTCTTCTAAACAGAGGCTCAATGACTTTTAA
1 AAATAAATAAAGCTCTTCTAAACAGAGGCTCAACAACTTCTGA
* * *
6359994 AAAGAAATAAAGCTCCTATAAACA
1 AAATAAATAAAGCTCTTCTAAACA
6360018 AATAAATAAG
Statistics
Matches: 196, Mismatches: 37, Indels: 27
0.75 0.14 0.10
Matches are distributed among these distances:
42 7 0.04
43 60 0.31
44 52 0.27
45 7 0.04
46 38 0.19
47 24 0.12
48 5 0.03
49 3 0.02
ACGTcount: A:0.46, C:0.16, G:0.12, T:0.26
Consensus pattern (43 bp):
AAATAAATAAAGCTCTTCTAAACAGAGGCTCAACAACTTCTGA
Found at i:6360024 original size:23 final size:23
Alignment explanation
Indices: 6359998--6360089 Score: 78
Period size: 23 Copynumber: 3.9 Consensus size: 23
6359988 TTTTAAAAAG
6359998 AAATAAAGCTCCTATAAACAAAT
1 AAATAAAGCTCCTATAAACAAAT
* * * *
6360021 AAATAAGGCTCAATGACTTGAA-AATT
1 AAATAAAGCTC-CT-A--TAAACAAAT
*
6360047 AAATAAAGCTCCTCTAAACAAAT
1 AAATAAAGCTCCTATAAACAAAT
* *
6360070 AAATAAGGCTCCTCTAAACA
1 AAATAAAGCTCCTATAAACA
6360090 GAGGCTCAAT
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
22 3 0.06
23 32 0.59
24 1 0.02
25 2 0.04
26 13 0.24
27 3 0.06
ACGTcount: A:0.50, C:0.18, G:0.09, T:0.23
Consensus pattern (23 bp):
AAATAAAGCTCCTATAAACAAAT
Found at i:6360065 original size:49 final size:50
Alignment explanation
Indices: 6359976--6360080 Score: 167
Period size: 49 Copynumber: 2.1 Consensus size: 50
6359966 TTCTAAACAG
*
6359976 AGGCTCAATGACTTTTAAAAAGAAATAAAGCTCCTATAAACAAATAAATA
1 AGGCTCAATGACTTTGAAAAAGAAATAAAGCTCCTATAAACAAATAAATA
** *
6360026 AGGCTCAATGAC-TTGAAAATTAAATAAAGCTCCTCTAAACAAATAAATA
1 AGGCTCAATGACTTTGAAAAAGAAATAAAGCTCCTATAAACAAATAAATA
6360075 AGGCTC
1 AGGCTC
6360081 CTCTAAACAG
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
49 39 0.76
50 12 0.24
ACGTcount: A:0.49, C:0.16, G:0.11, T:0.24
Consensus pattern (50 bp):
AGGCTCAATGACTTTGAAAAAGAAATAAAGCTCCTATAAACAAATAAATA
Found at i:6360134 original size:47 final size:47
Alignment explanation
Indices: 6360066--6360166 Score: 139
Period size: 47 Copynumber: 2.1 Consensus size: 47
6360056 TCCTCTAAAC
** * * *
6360066 AAATAAATAAGGCTCCTCTAAACAGAGGCTCAATGACTAAAAAAAGT
1 AAATAAATAAACCTCCTCTAAACAAAGGCCCAATGAATAAAAAAAGT
**
6360113 AAATAAATAAACCTCCTCTAAACAAAGGCCCAATGAATTGAAAAAGT
1 AAATAAATAAACCTCCTCTAAACAAAGGCCCAATGAATAAAAAAAGT
6360160 AAATAAA
1 AAATAAA
6360167 GCTCCTTTAA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.52, C:0.17, G:0.12, T:0.19
Consensus pattern (47 bp):
AAATAAATAAACCTCCTCTAAACAAAGGCCCAATGAATAAAAAAAGT
Found at i:6360206 original size:43 final size:44
Alignment explanation
Indices: 6360154--6360457 Score: 283
Period size: 43 Copynumber: 6.9 Consensus size: 44
6360144 AATGAATTGA
* * * *
6360154 AAAAGTAAATAAAGCTCCTTTAAATAGAGGCTCAAAAACTTTTG
1 AAAAGTAAATAAGGCTCCTCTAAACAGAGGCTCAACAACTTTTG
* * * * * *
6360198 AAAA-TAAATAAAGCTCCTTTAAGCAAAGGCTTAACGACTTTT-
1 AAAAGTAAATAAGGCTCCTCTAAACAGAGGCTCAACAACTTTTG
* * * * * * *
6360240 AAAAATAACTAAGGCACTTTTAAGCAGAGACTCAACAACTTTTG
1 AAAAGTAAATAAGGCTCCTCTAAACAGAGGCTCAACAACTTTTG
* *** * * *
6360284 ATAAAGTAAATAAGGCTCCCCTAGGTAGAAGCTCAATAACTTTTA
1 A-AAAGTAAATAAGGCTCCTCTAAACAGAGGCTCAACAACTTTTG
* * * *
6360329 ATAAAGTTAATAAGGGTCCTCTAAATAGAGACTCAACAACTTTTG
1 A-AAAGTAAATAAGGCTCCTCTAAACAGAGGCTCAACAACTTTTG
* *
6360374 AAATGTAAATAAGGCTCCCCTAAACAGAGGCTCAACAA-TTTTG
1 AAAAGTAAATAAGGCTCCTCTAAACAGAGGCTCAACAACTTTTG
6360417 AAAAGTAAATAAGGCTCC-CATAAACAGAGGCTCAACAACTT
1 AAAAGTAAATAAGGCTCCTC-TAAACAGAGGCTCAACAACTT
6360458 AGAAAATAAA
Statistics
Matches: 213, Mismatches: 42, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
42 5 0.02
43 102 0.48
44 38 0.18
45 68 0.32
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.25
Consensus pattern (44 bp):
AAAAGTAAATAAGGCTCCTCTAAACAGAGGCTCAACAACTTTTG
Found at i:6360743 original size:33 final size:33
Alignment explanation
Indices: 6360706--6360776 Score: 97
Period size: 33 Copynumber: 2.2 Consensus size: 33
6360696 TCCTAAATTC
*
6360706 ATGCACTAGACATTCTCAAATACAATGCATACT
1 ATGCACTAGACATTCACAAATACAATGCATACT
* * * *
6360739 ATGCACTAGCCATTCAGAAATGCAATGCATGCT
1 ATGCACTAGACATTCACAAATACAATGCATACT
6360772 ATGCA
1 ATGCA
6360777 AATTTCAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (33 bp):
ATGCACTAGACATTCACAAATACAATGCATACT
Found at i:6361510 original size:14 final size:13
Alignment explanation
Indices: 6361491--6361529 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
6361481 GACTCATCTT
6361491 TTTTTTCATTTTTC
1 TTTTTTC-TTTTTC
*
6361505 TTTTTTTTTTCTTC
1 TTTTTTCTTT-TTC
6361519 TTTTTTCTTTT
1 TTTTTTCTTTT
6361530 AAACATAGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 4 0.18
14 18 0.82
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTCTTTTTC
Found at i:6361513 original size:21 final size:21
Alignment explanation
Indices: 6361489--6361529 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
6361479 TTGACTCATC
6361489 TTTTTT-TTCATTTTTCTTTT
1 TTTTTTCTTCATTTTTCTTTT
*
6361509 TTTTTTCTTCTTTTTTCTTTT
1 TTTTTTCTTCATTTTTCTTTT
6361530 AAACATAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTTTCTTCATTTTTCTTTT
Found at i:6369264 original size:4 final size:4
Alignment explanation
Indices: 6369255--6369308 Score: 56
Period size: 4 Copynumber: 13.2 Consensus size: 4
6369245 AATACTTTAA
* * *
6369255 AAAT AAAT AAAAT AACT AAAT AAAT AAAT AAAT AAAAT AATT AAA- AAAC
1 AAAT AAAT -AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT AAAT AAAT
6369304 AAAT A
1 AAAT A
6369309 GGATCGGCTC
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
3 3 0.07
4 31 0.74
5 8 0.19
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (4 bp):
AAAT
Found at i:6369281 original size:12 final size:12
Alignment explanation
Indices: 6369255--6369308 Score: 56
Period size: 13 Copynumber: 4.4 Consensus size: 12
6369245 AATACTTTAA
6369255 AAATAAATAAAAT
1 AAATAAAT-AAAT
*
6369268 AACTAAATAAAT
1 AAATAAATAAAT
6369280 AAATAAATAAAAT
1 AAATAAAT-AAAT
* *
6369293 AATTAAA-AAAC
1 AAATAAATAAAT
6369304 AAATA
1 AAATA
6369309 GGATCGGCTC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
11 7 0.20
12 11 0.31
13 17 0.49
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (12 bp):
AAATAAATAAAT
Found at i:6369283 original size:25 final size:24
Alignment explanation
Indices: 6369255--6369308 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 24
6369245 AATACTTTAA
*
6369255 AAATAAATAAAATAACTAAATAAAT
1 AAATAAATAAAATAACTAAA-AAAC
*
6369280 AAATAAATAAAATAATTAAAAAAC
1 AAATAAATAAAATAACTAAAAAAC
6369304 AAATA
1 AAATA
6369309 GGATCGGCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 8 0.30
25 19 0.70
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (24 bp):
AAATAAATAAAATAACTAAAAAAC
Found at i:6374666 original size:45 final size:45
Alignment explanation
Indices: 6374615--6374707 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 45
6374605 GCATTTATTG
* * *
6374615 ATGGTGGTCAAGATAAGTGCCCACATCAAAGGCCAAC-TAGTGCCA
1 ATGGTGGTCAAGACAAATGCCCACACCAAAGGCCAACTTA-TGCCA
* *
6374660 ATGGTGGTCAAGGCAAATGCCCATACCAAAGGCCAACTTATGCCA
1 ATGGTGGTCAAGACAAATGCCCACACCAAAGGCCAACTTATGCCA
6374705 ATG
1 ATG
6374708 ATAGTTAAGG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
45 40 0.95
46 2 0.05
ACGTcount: A:0.33, C:0.25, G:0.24, T:0.18
Consensus pattern (45 bp):
ATGGTGGTCAAGACAAATGCCCACACCAAAGGCCAACTTATGCCA
Found at i:6374718 original size:45 final size:45
Alignment explanation
Indices: 6374632--6374718 Score: 113
Period size: 45 Copynumber: 1.9 Consensus size: 45
6374622 TCAAGATAAG
* * *
6374632 TGCCCACATCAAAGGCCAACTAGTGCCAATGGTGGTCAAGGCAAA
1 TGCCCACACCAAAGGCCAACTAGTGCCAATGATAGTCAAGGCAAA
* *
6374677 TGCCCATACCAAAGGCCAACTTA-TGCCAATGATAGTTAAGGC
1 TGCCCACACCAAAGGCCAAC-TAGTGCCAATGATAGTCAAGGC
6374719 TTGTGCTCGC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
45 34 0.94
46 2 0.06
ACGTcount: A:0.33, C:0.26, G:0.22, T:0.18
Consensus pattern (45 bp):
TGCCCACACCAAAGGCCAACTAGTGCCAATGATAGTCAAGGCAAA
Found at i:6394026 original size:27 final size:26
Alignment explanation
Indices: 6393995--6394055 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
6393985 AAACCCCTTT
* *
6393995 TAAAAAATTTCAAAAAATATTAAACCA
1 TAAAAAATTTCAAAAAATATGAAA-AA
* *
6394022 TAAAAAATTTTAAAAATTATGAAAAA
1 TAAAAAATTTCAAAAAATATGAAAAA
6394048 TAAAAAAT
1 TAAAAAAT
6394056 GAGTCATCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 9 0.30
27 21 0.70
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.28
Consensus pattern (26 bp):
TAAAAAATTTCAAAAAATATGAAAAA
Found at i:6416385 original size:6 final size:6
Alignment explanation
Indices: 6416374--6416398 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
6416364 GCCTAGAACA
6416374 ATGGTC ATGGTC ATGGTC ATGGTC A
1 ATGGTC ATGGTC ATGGTC ATGGTC A
6416399 GCATGTCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.16, G:0.32, T:0.32
Consensus pattern (6 bp):
ATGGTC
Found at i:6416445 original size:29 final size:29
Alignment explanation
Indices: 6416383--6416452 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
6416373 AATGGTCATG
* *
6416383 GTCATGGTCATGGTCAGCATGTCTCAATT
1 GTCATAGTCATGGTCAACATGTCTCAATT
* * * *
6416412 ATCATAGTCTTGGTCAACATGTGTCGATT
1 GTCATAGTCATGGTCAACATGTCTCAATT
*
6416441 GTCATGGTCATG
1 GTCATAGTCATG
6416453 CTCTTAATAA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (29 bp):
GTCATAGTCATGGTCAACATGTCTCAATT
Found at i:6417701 original size:113 final size:113
Alignment explanation
Indices: 6417501--6417728 Score: 366
Period size: 113 Copynumber: 2.0 Consensus size: 113
6417491 GCGACCCATG
*
6417501 TGTGGGCATGAGATTGAGAAATCAAGGTAATGCTAAGCTCAAAGAGAGTTATCTTGGTGCAATTG
1 TGTGGGAATGAGATTGAGAAATCAAGGTAATGCTAAGCTCAAAGAGAGTTATCTTGGTGCAATTG
* * * *
6417566 TGATAATGTATCTATATGGGCTCGAGAATGAGTCATTGAGGTGATACA
66 TGATAATGTATCTATATAGGCTCGAGAATAAGCCATCGAGGTGATACA
* ** * *
6417614 TGTGGGAATGATATTGAGAAATTGAGGTAATGCTAAGCTTAAAGAGAGTTATCTTGGTGTAATTG
1 TGTGGGAATGAGATTGAGAAATCAAGGTAATGCTAAGCTCAAAGAGAGTTATCTTGGTGCAATTG
6417679 TGATAATGTATCTATATAGGCTCGAGAATAAGCCATCGAGGTGATACA
66 TGATAATGTATCTATATAGGCTCGAGAATAAGCCATCGAGGTGATACA
6417727 TG
1 TG
6417729 GGAAAAAATA
Statistics
Matches: 105, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
113 105 1.00
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.30
Consensus pattern (113 bp):
TGTGGGAATGAGATTGAGAAATCAAGGTAATGCTAAGCTCAAAGAGAGTTATCTTGGTGCAATTG
TGATAATGTATCTATATAGGCTCGAGAATAAGCCATCGAGGTGATACA
Found at i:6451565 original size:144 final size:142
Alignment explanation
Indices: 6451342--6451884 Score: 565
Period size: 144 Copynumber: 3.8 Consensus size: 142
6451332 GAGAAGTACA
* * * * *
6451342 AAATTACTAAAATGCCCT-TTAGGTAATATTTTCGT-ATTTGGCCCTCCCGAGTTCAAATTTTCA
1 AAATTACTAAAATACCCTATAAGG--GTATTTT-GTAATTTGGCCTTCCCGAGCTCAAATTTTCA
* * * * * *
6451405 TGAAACGTTTTAGATCTTAATTTCATAAAATTTCTTGATTTTTGGTGCAATTGAAATCATAGCCG
63 TGAAACTTTTTAGATCTTAATTTCATAAAATTTCATGATTTTTGGTGCATTTGAAATCACAACAG
* *
6451470 TGCCTCAAGATGTGTG
128 TACCTCAA-AAGTGTG
* * * * * *
6451486 AAATCACTAAAATACCCTATAAGGGTACTTTTATAATTTGGCCTTCCTGAGCTCAGATTTTTACG
1 AAATTACTAAAATACCCTATAAGGGTA-TTTTGTAATTTGGCCTTCCCGAGCTCAAATTTTCATG
* * *
6451551 AAACTTTTTAGATCTTAATTTCA-AAATATTTTATGATTTTTAGTGCATTTGAAATCACAATAGT
65 AAACTTTTTAGATCTTAATTTCATAAA-ATTTCATGATTTTTGGTGCATTTGAAATCACAACAGT
*
6451615 ACCTTGAAAAGTGTG
129 ACC-TCAAAAGTGTG
* * * ***
6451630 AAATTACCAAAATACCCTTATAAGGGTATTTTTGTAATTTGGCTTTCCCAAGCTTGGATTTTCAT
1 AAATTACTAAAATACCC-TATAAGGGTA-TTTTGTAATTTGGCCTTCCCGAGCTCAAATTTTCAT
*** *
6451695 GAAACTCACTAGATCTTAATTTCATAATATTTCAT-ATTTTTGGTGCATTTGAAATCACAACAGT
64 GAAACTTTTTAGATCTTAATTTCATAAAATTTCATGATTTTTGGTGCATTTGAAATCACAACAGT
6451759 ACC-CTAATAAGTGTG
129 ACCTC-AA-AAGTGTG
* * **
6451774 AAATTACTAAAATATCCCTATAGGGGTATTTTCGTAATTTGACCTTTTCGAGCTCAAATTTTCAT
1 AAATTACTAAAATA-CCCTATAAGGGTATTTT-GTAATTTGGCCTTCCCGAGCTCAAATTTTCAT
* * * *
6451839 GAAACTTTTCAGATCTCAATTTAATAATATTTCATGATTTTTGGTG
64 GAAACTTTTTAGATCTTAATTTCATAAAATTTCATGATTTTTGGTG
6451885 TTTTAAAATC
Statistics
Matches: 329, Mismatches: 58, Indels: 23
0.80 0.14 0.06
Matches are distributed among these distances:
143 12 0.04
144 230 0.70
145 85 0.26
146 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (142 bp):
AAATTACTAAAATACCCTATAAGGGTATTTTGTAATTTGGCCTTCCCGAGCTCAAATTTTCATGA
AACTTTTTAGATCTTAATTTCATAAAATTTCATGATTTTTGGTGCATTTGAAATCACAACAGTAC
CTCAAAAGTGTG
Found at i:6454205 original size:3 final size:3
Alignment explanation
Indices: 6454197--6454253 Score: 51
Period size: 3 Copynumber: 19.0 Consensus size: 3
6454187 TTTTTAATGG
* * * * * * *
6454197 TAA TAA TAA TAA TAA TAA CAA TAA CAA TAA TAA CAA CAA CAA CAA CAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6454245 TAA TAA TAA
1 TAA TAA TAA
6454254 AAGGGAAACA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.12, G:0.00, T:0.21
Consensus pattern (3 bp):
TAA
Found at i:6464843 original size:13 final size:12
Alignment explanation
Indices: 6464823--6464864 Score: 57
Period size: 13 Copynumber: 3.3 Consensus size: 12
6464813 TTTGCCTAAG
6464823 AAAAAAAAACAA
1 AAAAAAAAACAA
6464835 AACAAAAAAACAA
1 AA-AAAAAAACAA
*
6464848 AAAAAAAGAATAA
1 AAAAAAA-AACAA
6464861 AAAA
1 AAAA
6464865 TGAAGGATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 7 0.26
13 20 0.74
ACGTcount: A:0.88, C:0.07, G:0.02, T:0.02
Consensus pattern (12 bp):
AAAAAAAAACAA
Found at i:6466072 original size:22 final size:22
Alignment explanation
Indices: 6466015--6466073 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
6466005 TTGAGATTTG
6466015 TAAGACCTTTGGGCATAATCTC
1 TAAGACCTTTGGGCATAATCTC
* *
6466037 TAAGA-CTTTGGGGCATAGTTTC
1 TAAGACCTTT-GGGCATAATCTC
6466059 TAAGACCTTTGGGCA
1 TAAGACCTTTGGGCA
6466074 AAAGATTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 4 0.12
22 25 0.76
23 4 0.12
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (22 bp):
TAAGACCTTTGGGCATAATCTC
Found at i:6466305 original size:22 final size:22
Alignment explanation
Indices: 6466268--6466381 Score: 147
Period size: 22 Copynumber: 5.2 Consensus size: 22
6466258 TTGAGATTTG
* *
6466268 TAAGACCTCCAAGCATAATCTC
1 TAAGACCTCTAGGCATAATCTC
*
6466290 TAAGACTTCTAGGCATAATCTC
1 TAAGACCTCTAGGCATAATCTC
* *
6466312 TAAAACCTCTAGGCATAATCTT
1 TAAGACCTCTAGGCATAATCTC
* *
6466334 TAAAACCTCTGGGCATAATCTC
1 TAAGACCTCTAGGCATAATCTC
* *
6466356 TAAGACCTCCAGGCATAATCTG
1 TAAGACCTCTAGGCATAATCTC
6466378 TAAG
1 TAAG
6466382 TCCTTCGGGC
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 80 1.00
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.27
Consensus pattern (22 bp):
TAAGACCTCTAGGCATAATCTC
Found at i:6466305 original size:127 final size:127
Alignment explanation
Indices: 6465960--6466326 Score: 490
Period size: 126 Copynumber: 2.9 Consensus size: 127
6465950 AAATAAAAAC
* *
6465960 TTTT-AAAGTTTCAACACCTCTATTACCAGGAGCATTCAAAGATTTTTGAGATTTGTAAGACCTT
1 TTTTCAAAGTTTCAACACCTCTATTACGAGGAGCATTCAAAGATTTTTGAGATTTGTAAGACCTC
** * * *
6466024 TGGGCATAATCTCTAAGACTT-TGGGGCATAGTTTCTAAGACCTTTGGGCAAAAGATTTTAAA
66 TAAGCATAATCTCTAAGACTTCT-GGGCATAATTTCCAAGACCTTTAGGCAAAAGATTTTAAA
* ** **
6466086 ATTTCAAAGTTTCAATGCCTCTATTA-GAGGAGCATTCAAAGATTTTTTTGATTTGTAAGACCTC
1 TTTTCAAAGTTTCAACACCTCTATTACGAGGAGCATTCAAAGATTTTTGAGATTTGTAAGACCTC
* *
6466150 TAAGCATAATCACTAAGACCTTC-GGGCATAATTTCCAAGACCTTTAGGTAAAAGATTTTAAA
66 TAAGCATAATCTCTAAGA-CTTCTGGGCATAATTTCCAAGACCTTTAGGCAAAAGATTTTAAA
* *
6466212 TTTTCAAAGTTTCAACACCTCTATTACGAGGAGCATTCAATGGTTTTTGAGATTTGTAAGACCTC
1 TTTTCAAAGTTTCAACACCTCTATTACGAGGAGCATTCAAAGATTTTTGAGATTTGTAAGACCTC
* * * * * *
6466277 CAAGCATAATCTCTAAGACTTCTAGGCATAATCTCTAAAACCTCTAGGCA
66 TAAGCATAATCTCTAAGACTTCTGGGCATAATTTCCAAGACCTTTAGGCA
6466327 TAATCTTTAA
Statistics
Matches: 207, Mismatches: 29, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
126 114 0.55
127 93 0.45
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (127 bp):
TTTTCAAAGTTTCAACACCTCTATTACGAGGAGCATTCAAAGATTTTTGAGATTTGTAAGACCTC
TAAGCATAATCTCTAAGACTTCTGGGCATAATTTCCAAGACCTTTAGGCAAAAGATTTTAAA
Found at i:6466524 original size:106 final size:106
Alignment explanation
Indices: 6466332--6466544 Score: 275
Period size: 106 Copynumber: 2.0 Consensus size: 106
6466322 AGGCATAATC
* ** *
6466332 TTTAAAACCTCTGGGCATAATCTCTAAGACCTCCAGGCATAATCTGTAAGTCCTTCGGGCAAGAT
1 TTTAAAACCTCTGGGCATAATCTCTAAGACCTCCAAGCATAATCTGTAAGTCCTTCAAGCAAGAA
* *
6466397 TCAAAAGTCTTTCAAGATGAATCTATTTTAATTTTGAGATT
66 TCAAAAGTCTTTCAAGATGAATCTATTTAAAGTTTGAGATT
* * * *
6466438 TTTAAAACCTCTGGGCGTAATCTCTAAGACTTCCAAGCATAATCTGTAATTCC-TCTAAGTAAGA
1 TTTAAAACCTCTGGGCATAATCTCTAAGACCTCCAAGCATAATCTGTAAGTCCTTC-AAGCAAGA
** ** *
6466502 ATCGTAAGTCTTTTGAGTTGAATCTATTTAAAGTTTGAGATT
65 ATCAAAAGTCTTTCAAGATGAATCTATTTAAAGTTTGAGATT
6466544 T
1 T
6466545 GTAAGTCCTT
Statistics
Matches: 91, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
105 2 0.02
106 89 0.98
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (106 bp):
TTTAAAACCTCTGGGCATAATCTCTAAGACCTCCAAGCATAATCTGTAAGTCCTTCAAGCAAGAA
TCAAAAGTCTTTCAAGATGAATCTATTTAAAGTTTGAGATT
Found at i:6466717 original size:11 final size:11
Alignment explanation
Indices: 6466698--6466754 Score: 53
Period size: 11 Copynumber: 5.1 Consensus size: 11
6466688 TTTATAAATT
6466698 AAAAAAAAAA-
1 AAAAAAAAAAC
6466708 AAAAACAAAAAC
1 AAAAA-AAAAAC
* *
6466720 AAGAATAAAAC
1 AAAAAAAAAAC
*
6466731 AAAAATAAAAAT
1 AAAAA-AAAAAC
*
6466743 AAAAACAAAAC
1 AAAAAAAAAAC
6466754 A
1 A
6466755 TAGCGAAAAC
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
10 5 0.14
11 19 0.51
12 13 0.35
ACGTcount: A:0.84, C:0.09, G:0.02, T:0.05
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:6466729 original size:17 final size:18
Alignment explanation
Indices: 6466698--6466752 Score: 71
Period size: 17 Copynumber: 3.2 Consensus size: 18
6466688 TTTATAAATT
6466698 AAAAA-AAAAA-AAAAAC
1 AAAAACAAAAATAAAAAC
*
6466714 AAAAACAAGAAT-AAAAC
1 AAAAACAAAAATAAAAAC
*
6466731 AAAAATAAAAATAAAAAC
1 AAAAACAAAAATAAAAAC
6466749 AAAA
1 AAAA
6466753 CATAGCGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 5 0.15
17 19 0.58
18 9 0.27
ACGTcount: A:0.85, C:0.07, G:0.02, T:0.05
Consensus pattern (18 bp):
AAAAACAAAAATAAAAAC
Found at i:6466853 original size:49 final size:49
Alignment explanation
Indices: 6466790--6466918 Score: 152
Period size: 49 Copynumber: 2.7 Consensus size: 49
6466780 TTAAAGCCTT
* * **
6466790 TGTTTAGGAGGAGCCATTTTTAGACAAGATTTAGATGTTTCAAAACCTC
1 TGTTTGGGAGGAGCCATTTTCAGACAAGATTTAGAAATTTCAAAACCTC
* * ** *
6466839 TGTTTGGGATGAGCCATTTTCAGACAGGATTTTTAAATTTCAAAGCCTC
1 TGTTTGGGAGGAGCCATTTTCAGACAAGATTTAGAAATTTCAAAACCTC
* *
6466888 TATTTGGGAGGAGCCATTTTCA-CCAAGATTT
1 TGTTTGGGAGGAGCCATTTTCAGACAAGATTT
6466919 TATTTTTAAA
Statistics
Matches: 67, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
48 7 0.10
49 60 0.90
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.36
Consensus pattern (49 bp):
TGTTTGGGAGGAGCCATTTTCAGACAAGATTTAGAAATTTCAAAACCTC
Found at i:6466971 original size:37 final size:37
Alignment explanation
Indices: 6466922--6467052 Score: 142
Period size: 37 Copynumber: 3.6 Consensus size: 37
6466912 AAGATTTTAT
* *
6466922 TTTTAAAAGTTTCAAATCCTTTATTTAAGGGAAGCCA
1 TTTTCAAAGTTTCAAAGCCTTTATTTAAGGGAAGCCA
* * * * *
6466959 TTTTCAAAGTTTCTAAGCCTCTGTTTAGCGGGAA-ACA
1 TTTTCAAAGTTTCAAAGCCTTTATTTA-AGGGAAGCCA
*
6466996 TCTTT-AAAGTTTCAAAGCCTTTCTTTAA-GGAAGCCA
1 T-TTTCAAAGTTTCAAAGCCTTTATTTAAGGGAAGCCA
*
6467032 TTTTCAAAGTTTCAAAACCTT
1 TTTTCAAAGTTTCAAAGCCTT
6467053 CGTTTAGAAT
Statistics
Matches: 77, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
35 7 0.09
36 18 0.23
37 44 0.57
38 8 0.10
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (37 bp):
TTTTCAAAGTTTCAAAGCCTTTATTTAAGGGAAGCCA
Found at i:6467136 original size:37 final size:37
Alignment explanation
Indices: 6467087--6467219 Score: 158
Period size: 37 Copynumber: 3.6 Consensus size: 37
6467077 CAAGATTTAT
* *
6467087 TTTTAAAAGTTTCAAAGCCTCTATTTTGGGGGAGCCA
1 TTTTCAAAGTTTCAAAGCCTCTATTTTGGAGGAGCCA
*
6467124 TTTTCAAAGTTTCAAAGTCTCTATTTTGGAGGAGCCA
1 TTTTCAAAGTTTCAAAGCCTCTATTTTGGAGGAGCCA
* * ** * *
6467161 TTTTCAAAGTTTCAATGCCTTTGCTTAGGAGAAGCCA
1 TTTTCAAAGTTTCAAAGCCTCTATTTTGGAGGAGCCA
* * *
6467198 TTTTTAAAGTTTTAAAACCTCT
1 TTTTCAAAGTTTCAAAGCCTCT
6467220 GCTTAGAGGG
Statistics
Matches: 81, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 81 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (37 bp):
TTTTCAAAGTTTCAAAGCCTCTATTTTGGAGGAGCCA
Found at i:6467172 original size:165 final size:166
Alignment explanation
Indices: 6466896--6467342 Score: 530
Period size: 166 Copynumber: 2.7 Consensus size: 166
6466886 TCTATTTGGG
* * * * * *
6466896 AGGAGCCATTTTC-ACCAAGATTTTATTTTTAAAAGTTTCAAATCCTTTATTTAAGGGAAGCCAT
1 AGGAGCAATTTTCAAACAAGATTTTATTTTTAAAAGTTTCAAAGCCTCTATTTAGGGGGAGCCAT
* * **
6466960 TTTCAAAGTTTCTAAGCCTCTGTTTAGCGGGAAACATCTTT-AAAGTTTCAAAGCCTTT-CTTTA
66 TTTCAAAGTTTCAAAGCCTCTATTTAG-GGGAGCCAT-TTTCAAAGTTTCAAAGCCTTTGC-TTA
*
6467023 AG-GAAGCCATTTTCAAAGTTTCAAAACCT-TCGTTTAGA
128 AGAGAAGCCATTTTCAAAGTTTCAAAACCTCT-GCTTAGA
* * *
6467061 ATGAGCAGTTTTCAAACAAGA-TTTATTTTTAAAAGTTTCAAAGCCTCTATTTTGGGGGAGCCAT
1 AGGAGCAATTTTCAAACAAGATTTTATTTTTAAAAGTTTCAAAGCCTCTATTTAGGGGGAGCCAT
* * * *
6467125 TTTCAAAGTTTCAAAGTCTCTATTTTGGAGGAGCCATTTTCAAAGTTTCAATGCCTTTGCTTAGG
66 TTTCAAAGTTTCAAAGCCTCTATTTAGG-GGAGCCATTTTCAAAGTTTCAAAGCCTTTGCTTAAG
* *
6467190 AGAAGCCATTTTTAAAGTTTTAAAACCTCTGCTTAGA
130 AGAAGCCATTTTCAAAGTTTCAAAACCTCTGCTTAGA
* * * * * * *
6467227 GGGGGCAATTTTGAAACAAGATTTTATTTTTAAAAGTTTCAAAGCTTCT-TTTAGAGTGAACCAT
1 AGGAGCAATTTTCAAACAAGATTTTATTTTTAAAAGTTTCAAAGCCTCTATTTAGGGGGAGCCAT
* *
6467291 TTTCAAAGTTTCAAAACCCCTATTTAGGGGAAGCCATTTTCAAAGTTTCAAA
66 TTTCAAAGTTTCAAAGCCTCTATTTAGGGG-AGCCATTTTCAAAGTTTCAAA
6467343 ATCTTTGTTT
Statistics
Matches: 239, Mismatches: 35, Indels: 15
0.83 0.12 0.05
Matches are distributed among these distances:
164 4 0.02
165 99 0.41
166 109 0.46
167 27 0.11
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (166 bp):
AGGAGCAATTTTCAAACAAGATTTTATTTTTAAAAGTTTCAAAGCCTCTATTTAGGGGGAGCCAT
TTTCAAAGTTTCAAAGCCTCTATTTAGGGGAGCCATTTTCAAAGTTTCAAAGCCTTTGCTTAAGA
GAAGCCATTTTCAAAGTTTCAAAACCTCTGCTTAGA
Found at i:6467317 original size:37 final size:36
Alignment explanation
Indices: 6467254--6467343 Score: 110
Period size: 37 Copynumber: 2.5 Consensus size: 36
6467244 AAGATTTTAT
* * ** *
6467254 TTTTAAAAGTTTCAAAGCTTCTTTTAGAGTGAA-CCA
1 TTTTCAAAGTTTCAAAACCCCTTTTAG-GGGAAGCCA
6467290 TTTTCAAAGTTTCAAAACCCCTATTTAGGGGAAGCCA
1 TTTTCAAAGTTTCAAAACCCCT-TTTAGGGGAAGCCA
6467327 TTTTCAAAGTTTCAAAA
1 TTTTCAAAGTTTCAAAA
6467344 TCTTTGTTTG
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
36 22 0.47
37 25 0.53
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (36 bp):
TTTTCAAAGTTTCAAAACCCCTTTTAGGGGAAGCCA
Found at i:6468071 original size:145 final size:145
Alignment explanation
Indices: 6467914--6468405 Score: 476
Period size: 145 Copynumber: 3.4 Consensus size: 145
6467904 GGCCCACTCA
* * * ** *
6467914 AGCTTGGATTTTCATGAAACTTTCTAGATCTTAATTTTATAAATTTTTTTGATTTTTGATGCATT
1 AGCTTAGATTTTCATGAAACTTTCTAAATCTTAATTTCATAAATTTTCATGATTTTTGGTGCATT
* * * * * * *
6467979 TAAAATCATAGTCGTATCTTAGGAAGTATGAAATTACCAACATACCCCTATAAGGGTATTTTCAT
66 TGAAATCATAGTCGTAACTCAAGAAGTGTGAAATTACCAAAATACCCTTATAAGGGTATTTTCAT
*
6468044 AATTTAGCTTTCTTG
131 AATTTAACTTTCTTG
* ** * * * **
6468059 AGCTCAGATTTTCATGAAAAATTCTAGATTTTAATTTCATAAAATTTCATGATTTTTGGTAAATT
1 AGCTTAGATTTTCATGAAACTTTCTAAATCTTAATTTCATAAATTTTCATGATTTTTGGTGCATT
* * * * * *
6468124 TGAAATCATAGTAGTAAC-CAAAAAATGTGAAATTACCAAAATACTCTTGTAATGGTATTTTCAT
66 TGAAATCATAGTCGTAACTCAAGAAGTGTGAAATTACCAAAATACCCTTATAAGGGTATTTTCAT
* **
6468188 AATTTGACCTTCTCCCG
131 AATTT-AACTT-TCTTG
* *
6468205 AGCTTAGATTTTCTTG-AACTTTCCAAATCTTAATTTCAT-AATATTTCATGATTTTTGGTGCAT
1 AGCTTAGATTTTCATGAAACTTTCTAAATCTTAATTTCATAAAT-TTTCATGATTTTTGGTGCA-
* * * * *
6468268 TTTGAAATCATAG-CAATACCTCAAGAAGTGTGAAATTACTAAAATACCCTTTTAGGGGTATTTT
64 TTTGAAATCATAGTC-GTAACTCAAGAAGTGTGAAATTACCAAAATACCCTTATAAGGGTATTTT
* *
6468332 CGTAATTTAACCTTCTTG
128 CATAATTTAACTTTCTTG
* * * *
6468350 TG-TTGGATTTTCATGAAACTTT-TCAAATCTCAATTTTAT-AATATTTCATGATTTTT
1 AGCTTAGATTTTCATGAAACTTTCT-AAATCTTAATTTCATAAAT-TTTCATGATTTTT
6468406 AGTGTTTTAA
Statistics
Matches: 280, Mismatches: 59, Indels: 16
0.79 0.17 0.05
Matches are distributed among these distances:
144 54 0.19
145 147 0.52
146 36 0.13
147 43 0.15
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (145 bp):
AGCTTAGATTTTCATGAAACTTTCTAAATCTTAATTTCATAAATTTTCATGATTTTTGGTGCATT
TGAAATCATAGTCGTAACTCAAGAAGTGTGAAATTACCAAAATACCCTTATAAGGGTATTTTCAT
AATTTAACTTTCTTG
Found at i:6475579 original size:45 final size:45
Alignment explanation
Indices: 6475475--6475581 Score: 117
Period size: 45 Copynumber: 2.4 Consensus size: 45
6475465 GTGCCGTCAC
* * * * *
6475475 CAAAGGCTAGCCTGTGTTGATGGTGGTTGAGGTAGATGCCTATAC
1 CAAAGGCTAGCTTGTGCTGATGGTGGTAGAGGTAGATGCCCATAA
* * *
6475520 CAAATGCCAACTTGTGCTGATGGTGGTCAG-GGTAGATGCCCATAA
1 CAAAGGCTAGCTTGTGCTGATGGTGGT-AGAGGTAGATGCCCATAA
*
6475565 CAAAGGTTAGCTTGTGC
1 CAAAGGCTAGCTTGTGC
6475582 CAATGATGGT
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
45 48 0.98
46 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (45 bp):
CAAAGGCTAGCTTGTGCTGATGGTGGTAGAGGTAGATGCCCATAA
Found at i:6485131 original size:18 final size:18
Alignment explanation
Indices: 6485108--6485143 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
6485098 TTGAAAAAAT
6485108 TAGAGTGCTTAAAGCAAA
1 TAGAGTGCTTAAAGCAAA
6485126 TAGAGTGCTTAAAGCAAA
1 TAGAGTGCTTAAAGCAAA
6485144 GCTACACTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.22
Consensus pattern (18 bp):
TAGAGTGCTTAAAGCAAA
Found at i:6496132 original size:33 final size:33
Alignment explanation
Indices: 6496095--6496164 Score: 97
Period size: 33 Copynumber: 2.1 Consensus size: 33
6496085 CATACATGAC
* *
6496095 TATCCTAGGCCTAG-GCTATGCACCACCCATGGG
1 TATCCTAAG-CTAGAGCCATGCACCACCCATGGG
*
6496128 TATCCTAAGCTCGAGCCATGCACCACCCATGGG
1 TATCCTAAGCTAGAGCCATGCACCACCCATGGG
6496161 TATC
1 TATC
6496165 AAAGGCCAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 3 0.09
33 30 0.91
ACGTcount: A:0.23, C:0.34, G:0.21, T:0.21
Consensus pattern (33 bp):
TATCCTAAGCTAGAGCCATGCACCACCCATGGG
Found at i:6496180 original size:33 final size:33
Alignment explanation
Indices: 6496112--6496183 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
6496102 GGCCTAGGCT
* *
6496112 ATGCACCACCCATGGGTATCCTAAGCTCGAGCC
1 ATGCACCACCCATGGGTATCCAAAGCTCGAACC
6496145 ATGCACCACCCATGGGTAT-CAAAGGC-CAGAACC
1 ATGCACCACCCATGGGTATCCAAA-GCTC-GAACC
6496178 ATGCAC
1 ATGCAC
6496184 ATTGTGCACC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 4 0.11
33 31 0.89
ACGTcount: A:0.29, C:0.35, G:0.21, T:0.15
Consensus pattern (33 bp):
ATGCACCACCCATGGGTATCCAAAGCTCGAACC
Found at i:6498710 original size:82 final size:82
Alignment explanation
Indices: 6498573--6498741 Score: 257
Period size: 82 Copynumber: 2.1 Consensus size: 82
6498563 AACAAAACTT
* * * * *
6498573 ATAAGGCCTTGTCAACTAACTAATTACGGTTTGTTTGTTCTAGTAAACTACACACTGTCATGATT
1 ATAAGGCCTTGTCAACTAACTAATTACGGCTTATTTGTTCCACTAAACTACACACTATCATGATT
6498638 TGTGACCACCACATCTC
66 TGTGACCACCACATCTC
*** *
6498655 ATAAGGCCTTGTCAACTGGTTAATTATGGCTTATTTGTTCCACTAAACTACACACTATCATGATT
1 ATAAGGCCTTGTCAACTAACTAATTACGGCTTATTTGTTCCACTAAACTACACACTATCATGATT
6498720 TGTGACCACCACATCTC
66 TGTGACCACCACATCTC
6498737 ATAAG
1 ATAAG
6498742 TCTTTTTTTC
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
82 78 1.00
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (82 bp):
ATAAGGCCTTGTCAACTAACTAATTACGGCTTATTTGTTCCACTAAACTACACACTATCATGATT
TGTGACCACCACATCTC
Found at i:6510184 original size:43 final size:43
Alignment explanation
Indices: 6510123--6510207 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
6510113 ACTATGGCCA
*
6510123 TTTAGGCAAAGGAAGTTTGAGGCAACAATAGGTTTGTGATGCC
1 TTTAGGCAAAGGAAGTTTGAGGCAACAATAAGTTTGTGATGCC
* * * *
6510166 TTTAGGCCAATGAAGTTTGAGGTAATAATAAGTTTGTGATGC
1 TTTAGGCAAAGGAAGTTTGAGGCAACAATAAGTTTGTGATGC
6510208 GCTTAGATGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.31, C:0.09, G:0.28, T:0.32
Consensus pattern (43 bp):
TTTAGGCAAAGGAAGTTTGAGGCAACAATAAGTTTGTGATGCC
Found at i:6517720 original size:20 final size:19
Alignment explanation
Indices: 6517697--6517735 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
6517687 TTTTTACCTA
*
6517697 AATTTTTAAGTTTTATTTTT
1 AATTTTTAAATTTT-TTTTT
6517717 AATTTTTAAATTTTTTTTT
1 AATTTTTAAATTTTTTTTT
6517736 GCTTGGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (19 bp):
AATTTTTAAATTTTTTTTT
Found at i:6517994 original size:4 final size:4
Alignment explanation
Indices: 6517985--6518030 Score: 74
Period size: 4 Copynumber: 11.0 Consensus size: 4
6517975 GACATTTCAA
6517985 AAAT AAAT AAAT AAAT AAAT AAAT AAACT AAAAT AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAA-T -AAAT AAAT AAAT AAAT
6518031 GAAAATAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
4 35 0.88
5 2 0.05
6 3 0.08
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:6518020 original size:18 final size:17
Alignment explanation
Indices: 6517985--6518039 Score: 85
Period size: 18 Copynumber: 3.2 Consensus size: 17
6517975 GACATTTCAA
6517985 AAATAAATAAAT-AAAT
1 AAATAAATAAATAAAAT
6518001 AAATAAATAAACTAAAAT
1 AAATAAATAAA-TAAAAT
6518019 AAATAAATAAATGAAAAT
1 AAATAAATAAAT-AAAAT
6518037 AAA
1 AAA
6518040 AAGAAAATGC
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
16 11 0.31
17 2 0.06
18 23 0.64
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.22
Consensus pattern (17 bp):
AAATAAATAAATAAAAT
Found at i:6528839 original size:23 final size:23
Alignment explanation
Indices: 6528809--6528865 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
6528799 CTATCGTCAA
*
6528809 CACATGCTGGCCCTTGGTGAAGG
1 CACATGCTAGCCCTTGGTGAAGG
* *
6528832 CACATGCTAGCCCTTGTTGATGG
1 CACATGCTAGCCCTTGGTGAAGG
*
6528855 CATATGCTAGC
1 CACATGCTAGC
6528866 ATTTGTTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.19, C:0.26, G:0.28, T:0.26
Consensus pattern (23 bp):
CACATGCTAGCCCTTGGTGAAGG
Found at i:6528871 original size:23 final size:23
Alignment explanation
Indices: 6528830--6528882 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
6528820 CCTTGGTGAA
* *
6528830 GGCACATGCTAGCCCTTGTTGAT
1 GGCACATGCTAGCACTTGTTAAT
* *
6528853 GGCATATGCTAGCATTTGTTAAT
1 GGCACATGCTAGCACTTGTTAAT
6528876 GGCACAT
1 GGCACAT
6528883 ACCTTGATCG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.32
Consensus pattern (23 bp):
GGCACATGCTAGCACTTGTTAAT
Done.