Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 48 of 129
Found at i:6718736 original size:26 final size:26
Alignment explanation
Indices: 6718707--6718760 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
6718697 GAAAGTTATT
* *
6718707 ACGAGAAAAAGGGCCATGTGGAATGA
1 ACGAAAAAAAGGGCCATGTAGAATGA
*
6718733 ACGAAAAAAAGGGTCATGTAGAATGA
1 ACGAAAAAAAGGGCCATGTAGAATGA
6718759 AC
1 AC
6718761 TCATTTAAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.46, C:0.11, G:0.30, T:0.13
Consensus pattern (26 bp):
ACGAAAAAAAGGGCCATGTAGAATGA
Found at i:6721357 original size:3 final size:3
Alignment explanation
Indices: 6721349--6721377 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
6721339 ATGGTATAAT
6721349 ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
6721378 TATTATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:6725424 original size:19 final size:19
Alignment explanation
Indices: 6725402--6725443 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
6725392 AGGGTTTTGA
*
6725402 GTTTTACTTAAGGTTTCGG
1 GTTTTACTTAAAGTTTCGG
* *
6725421 GTTTTATTTAAAGTTTTGG
1 GTTTTACTTAAAGTTTCGG
6725440 GTTT
1 GTTT
6725444 CACATAGGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.17, C:0.05, G:0.24, T:0.55
Consensus pattern (19 bp):
GTTTTACTTAAAGTTTCGG
Found at i:6725835 original size:19 final size:18
Alignment explanation
Indices: 6725813--6725882 Score: 54
Period size: 19 Copynumber: 3.8 Consensus size: 18
6725803 TTTTTTATTA
6725813 TTTATAATATTATTATAT
1 TTTATAATATTATTATAT
* *
6725831 ATTTATTAT-TTACTTGTAT
1 -TTTATAATATTA-TTATAT
*
6725850 TATTAT-TTATTATTATAT
1 T-TTATAATATTATTATAT
*
6725868 TTTTTAATTATTATT
1 TTTATAA-TATTATT
6725883 TTAAACTTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
17 3 0.08
18 11 0.28
19 26 0.65
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (18 bp):
TTTATAATATTATTATAT
Found at i:6725841 original size:26 final size:27
Alignment explanation
Indices: 6725806--6725865 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 27
6725796 TTTAAAATTT
6725806 TTTATTATTTA-TAATATTATTATATA
1 TTTATTATTTACTAATATTATTATATA
** *
6725832 TTTATTATTTACTTGTATTATTATTTA
1 TTTATTATTTACTAATATTATTATATA
6725859 -TTATTAT
1 TTTATTAT
6725866 ATTTTTTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 18 0.60
27 12 0.40
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (27 bp):
TTTATTATTTACTAATATTATTATATA
Found at i:6725877 original size:16 final size:17
Alignment explanation
Indices: 6725821--6725881 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 17
6725811 TATTTATAAT
6725821 ATTATTATATATTTATTA
1 ATTATTATAT-TTTATTA
* * *
6725839 TTTACTTGTATTATTATTT
1 ATTA-TTATATT-TTATTA
6725858 ATTATTATATTTT-TTA
1 ATTATTATATTTTATTA
6725874 ATTATTAT
1 ATTATTAT
6725882 TTTAAACTTC
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
16 10 0.29
17 2 0.06
18 10 0.29
19 13 0.37
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (17 bp):
ATTATTATATTTTATTA
Found at i:6727191 original size:26 final size:26
Alignment explanation
Indices: 6727162--6727211 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
6727152 TGCTACCAAA
*
6727162 TTTTTTT-TACTTTTCTTTTTTGCTC
1 TTTTTTTCTTCTTTTCTTTTTTGCTC
* *
6727187 TTTTTTTCTTTTTTTTTTTTTTGCT
1 TTTTTTTCTTCTTTTCTTTTTTGCT
6727212 ACTACTCTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.02, C:0.12, G:0.04, T:0.82
Consensus pattern (26 bp):
TTTTTTTCTTCTTTTCTTTTTTGCTC
Found at i:6741678 original size:17 final size:17
Alignment explanation
Indices: 6741637--6741678 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
6741627 AAAAATATAA
*
6741637 AATAAAAATTAATTATC
1 AATAAAAATTAATTACC
*
6741654 AATTAAAATTAAATTACC
1 AATAAAAATT-AATTACC
6741672 AA-AAAAA
1 AATAAAAA
6741679 AATACAAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (17 bp):
AATAAAAATTAATTACC
Found at i:6748528 original size:21 final size:21
Alignment explanation
Indices: 6748498--6748548 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
6748488 ATTTATATAA
*
6748498 AAAAATAAA-GAAAAAAAGGG
1 AAAAAGAAAGGAAAAAAAGGG
*
6748518 AAAAGAGAAAGGAAAAGAAGGG
1 AAAA-AGAAAGGAAAAAAAGGG
6748540 AAAAAGAAA
1 AAAAAGAAA
6748549 TAGCGGCTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 4 0.15
21 9 0.33
22 14 0.52
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (21 bp):
AAAAAGAAAGGAAAAAAAGGG
Found at i:6748996 original size:23 final size:22
Alignment explanation
Indices: 6748939--6748998 Score: 59
Period size: 23 Copynumber: 2.7 Consensus size: 22
6748929 TTGATAAATA
6748939 ATAAATAATAAT-AAATATGTTT
1 ATAAAT-ATAATGAAATATGTTT
** * *
6748961 ATATTTTTTATGAAATTATGTTT
1 ATAAATATAATGAAA-TATGTTT
6748984 ATAAATATAATGAAA
1 ATAAATATAATGAAA
6748999 ATAAAAAATG
Statistics
Matches: 28, Mismatches: 8, Indels: 3
0.72 0.21 0.08
Matches are distributed among these distances:
21 3 0.11
22 7 0.25
23 18 0.64
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (22 bp):
ATAAATATAATGAAATATGTTT
Found at i:6750192 original size:18 final size:19
Alignment explanation
Indices: 6750163--6750199 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
6750153 AATTATCTTT
6750163 TTTTATAAAGTTTAATTAA
1 TTTTATAAAGTTTAATTAA
*
6750182 TTTTA-AAAGTTTTATTAA
1 TTTTATAAAGTTTAATTAA
6750200 AAAGATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (19 bp):
TTTTATAAAGTTTAATTAA
Found at i:6750991 original size:27 final size:26
Alignment explanation
Indices: 6750935--6750997 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 26
6750925 AATAGATAAT
6750935 AAAAGAAAAGCATTTTCTAAAAGGAAA
1 AAAAGAAAAGCATTTTCTAAAA-GAAA
* * *
6750962 AAAAGACAAGCATTTTCTTGAAA-AAG
1 AAAAGAAAAGCATTTTC-TAAAAGAAA
6750988 AAAAGAAAAG
1 AAAAGAAAAG
6750998 TTTCTTTTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
26 11 0.35
27 16 0.52
28 4 0.13
ACGTcount: A:0.59, C:0.08, G:0.16, T:0.17
Consensus pattern (26 bp):
AAAAGAAAAGCATTTTCTAAAAGAAA
Found at i:6751476 original size:35 final size:36
Alignment explanation
Indices: 6751390--6751476 Score: 88
Period size: 35 Copynumber: 2.4 Consensus size: 36
6751380 TAAATATACC
*
6751390 CATTTTATGCACATCATAATAAGATAATACATGCATT
1 CATTTCATGCACATCA-AATAAGATAATACATGCATT
* * * *
6751427 CTATCTCATCCACATC-AAT-AGATAGTGCATGCATTT
1 C-ATTTCATGCACATCAAATAAGATAATACATGCA-TT
6751463 CATTTCATGCACAT
1 CATTTCATGCACAT
6751477 GTTGATAAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
35 23 0.56
36 6 0.15
37 1 0.02
38 11 0.27
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.34
Consensus pattern (36 bp):
CATTTCATGCACATCAAATAAGATAATACATGCATT
Found at i:6756744 original size:78 final size:79
Alignment explanation
Indices: 6756649--6756793 Score: 195
Period size: 79 Copynumber: 1.8 Consensus size: 79
6756639 AGCAAAATGA
* * * *
6756649 AAAAAAAAAGAGCAAAG-AAAGAAAAACATGCACTTCGGATATGATAA-TCAAAGGCAAAAAGTG
1 AAAAAAAAAGAACAAAGAAAAGAAAAACATGCACCTCGAATATGAGAATTC-AAGGCAAAAAGTG
6756712 AATGAAGCTTCAATT
65 AATGAAGCTTCAATT
* * * *
6756727 AAAAAAATAGAACAAAGAAAAGAAAAACATGTACCTCGAATATGAGAATTCAGGGTAAAAAGTGA
1 AAAAAAAAAGAACAAAGAAAAGAAAAACATGCACCTCGAATATGAGAATTCAAGGCAAAAAGTGA
6756792 AT
66 AT
6756794 AAAGTTTTCG
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
78 15 0.26
79 40 0.70
80 2 0.04
ACGTcount: A:0.55, C:0.10, G:0.18, T:0.17
Consensus pattern (79 bp):
AAAAAAAAAGAACAAAGAAAAGAAAAACATGCACCTCGAATATGAGAATTCAAGGCAAAAAGTGA
ATGAAGCTTCAATT
Found at i:6757731 original size:83 final size:83
Alignment explanation
Indices: 6757592--6758016 Score: 440
Period size: 83 Copynumber: 5.0 Consensus size: 83
6757582 TCATCCAGTT
* * * *
6757592 TTCCTTGAAATATTCCCACCAATGAAAACATTGAATTCTCAATCACCACATCCACAAGCATTCCA
1 TTCCTTGAAATATGCCCACCAATGAAAAAATCGAATTGTCAATCACCACATCCACAAGCATTCCA
*
6757657 AATAGTAATTATCAAGCC
66 AATAGTAATCATCAAGCC
* * *
6757675 TTCCTTGAAATATGCCCACTAATGAAAAAATCGAATTGTCAATCACCATATTCACAAGCATTCCA
1 TTCCTTGAAATATGCCCACCAATGAAAAAATCGAATTGTCAATCACCACATCCACAAGCATTCCA
6757740 AATAGTAATCATCAAGCCC
66 AATAGTAATCATCAAG-CC
* * * * *
6757759 TT-ATTGAAATATGTCTACCAGTGAAAAAATCGAATTGTTTTTCAAATTGTCAATCACCCCATCC
1 TTCCTTGAAATATGCCCACCAATGAAAAAATC-----G-------AATTGTCAATCACCACATCC
* * *
6757823 ACAAGCACTCTAAATAGTAATCATCAAGCT
54 ACAAGCATTCCAAATAGTAATCATCAAGCC
* * * *
6757853 TTTCTTGAAATATGCCCACCAATGAAAAAATCAAATTGTCAATCACCCCCATCCATAAGCATTCC
1 TTCCTTGAAATATGCCCACCAATGAAAAAATCGAATTGTCAATCA-CCACATCCACAAGCATTCC
6757918 AAATAGTAATCATCAAGCC
65 AAATAGTAATCATCAAGCC
* * * * *** * *
6757937 TTCCTTGAAATATACCCACCAGTGAAAAAATTGAATTGTCAGTCACTTTATCCATAAGCATTCTA
1 TTCCTTGAAATATGCCCACCAATGAAAAAATCGAATTGTCAATCACCACATCCACAAGCATTCCA
6758002 AA-ACGTAATCATCAA
66 AATA-GTAATCATCAA
6758017 TTTGTAAAAA
Statistics
Matches: 288, Mismatches: 38, Indels: 32
0.80 0.11 0.09
Matches are distributed among these distances:
82 1 0.00
83 138 0.48
84 77 0.27
88 1 0.00
94 3 0.01
95 68 0.24
ACGTcount: A:0.39, C:0.24, G:0.09, T:0.28
Consensus pattern (83 bp):
TTCCTTGAAATATGCCCACCAATGAAAAAATCGAATTGTCAATCACCACATCCACAAGCATTCCA
AATAGTAATCATCAAGCC
Found at i:6757879 original size:95 final size:91
Alignment explanation
Indices: 6757708--6757975 Score: 307
Period size: 95 Copynumber: 3.0 Consensus size: 91
6757698 GAAAAAATCG
** * * * *
6757708 AATTGTCAATCACCATATTCACAAGCATTCCAAATAGTAATCATCAAGCCCTTATTGAAATATGT
1 AATTGTCAATCACCCCATCCACAAGCATTCCAAATAGTAATCATCAAGCCTTTCTTGAAATATGC
*
6757773 CTACCAGTGAAAAAATCGAATTGTTTTTC
66 CCACCAGTGAAAAAATCGAATTG---TTC
* * *
6757802 AAATTGTCAATCACCCCATCCACAAGCACTCTAAATAGTAATCATCAAGCTTTTCTTGAAATATG
1 -AATTGTCAATCACCCCATCCACAAGCATTCCAAATAGTAATCATCAAGCCTTTCTTGAAATATG
* *
6757867 CCCACCAATGAAAAAATCAAATTG-TC
65 CCCACCAGTGAAAAAATCGAATTGTTC
* * *
6757893 AA---TC-A-C-CCCCATCCATAAGCATTCCAAATAGTAATCATCAAGCCTTCCTTGAAATATAC
1 AATTGTCAATCACCCCATCCACAAGCATTCCAAATAGTAATCATCAAGCCTTTCTTGAAATATGC
*
6757952 CCACCAGTGAAAAAATTGAATTGT
66 CCACCAGTGAAAAAATCGAATTGT
6757976 CAGTCACTTT
Statistics
Matches: 151, Mismatches: 21, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
84 67 0.44
85 1 0.01
86 1 0.01
87 2 0.01
90 2 0.01
91 2 0.01
95 76 0.50
ACGTcount: A:0.38, C:0.24, G:0.10, T:0.28
Consensus pattern (91 bp):
AATTGTCAATCACCCCATCCACAAGCATTCCAAATAGTAATCATCAAGCCTTTCTTGAAATATGC
CCACCAGTGAAAAAATCGAATTGTTC
Found at i:6757944 original size:84 final size:83
Alignment explanation
Indices: 6757800--6758016 Score: 292
Period size: 84 Copynumber: 2.6 Consensus size: 83
6757790 GAATTGTTTT
* * * *
6757800 TCAAATTGTCAATCACCCCATCCACAAGCACTCTAAATAGTAATCATCAAGCTTTTCTTGAAATA
1 TCAAATTGTCAATCACCCCATCCATAAGCATTCTAAATAGTAATCATCAAGCCTTCCTTGAAATA
*
6757865 TGCCCACCAATGAAAAAA
66 TACCCACCAATGAAAAAA
*
6757883 TCAAATTGTCAATCACCCCCATCCATAAGCATTCCAAATAGTAATCATCAAGCCTTCCTTGAAAT
1 TCAAATTGTCAATCA-CCCCATCCATAAGCATTCTAAATAGTAATCATCAAGCCTTCCTTGAAAT
*
6757948 ATACCCACCAGTGAAAAAA
65 ATACCCACCAATGAAAAAA
** * ***
6757967 TTGAATTGTCAGTCACTTTATCCATAAGCATTCTAAA-ACGTAATCATCAA
1 TCAAATTGTCAATCACCCCATCCATAAGCATTCTAAATA-GTAATCATCAA
6758017 TTTGTAAAAA
Statistics
Matches: 118, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
82 1 0.01
83 44 0.37
84 73 0.62
ACGTcount: A:0.39, C:0.26, G:0.09, T:0.27
Consensus pattern (83 bp):
TCAAATTGTCAATCACCCCATCCATAAGCATTCTAAATAGTAATCATCAAGCCTTCCTTGAAATA
TACCCACCAATGAAAAAA
Found at i:6758411 original size:90 final size:90
Alignment explanation
Indices: 6758294--6758463 Score: 220
Period size: 90 Copynumber: 1.9 Consensus size: 90
6758284 GTATAAATTA
* ** *
6758294 CATGTGCATCATGAGAAAGACATTTGATTTGCATGTTGTA-AAAAAAAAAAAAAAG-GGCATTTG
1 CATGTGCATCATGAGAAAGACATTTGATTTACA--TACTACAAAAAAAAAAAAAAGAGGCATTCG
6758357 CATTTGCATCACTTGCATTTAGACTAT
64 CATTTGCATCACTTGCATTTAGACTAT
* * *
6758384 CATGTGTATCATGA-AAAGGATATTTGATTTACATACTACAAAAAAAAAAACAAGAGGCATTCGC
1 CATGTGCATCATGAGAAA-GACATTTGATTTACATACTACAAAAAAAAAAAAAAGAGGCATTCGC
*
6758448 ATTTGCATCATTTGCA
65 ATTTGCATCACTTGCA
6758464 CTTGCAGTTG
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
88 3 0.04
89 17 0.25
90 49 0.71
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (90 bp):
CATGTGCATCATGAGAAAGACATTTGATTTACATACTACAAAAAAAAAAAAAAGAGGCATTCGCA
TTTGCATCACTTGCATTTAGACTAT
Found at i:6758614 original size:26 final size:26
Alignment explanation
Indices: 6758585--6758644 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
6758575 TTATTTCATC
* *
6758585 TGCATCATAACCAAGATATTCGCATT
1 TGCATCATAACAAAGACATTCGCATT
* * *
6758611 TGCATCATAAGAAAGGCATTTGCATT
1 TGCATCATAACAAAGACATTCGCATT
6758637 TGCATCAT
1 TGCATCAT
6758645 TGCATCTGTA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (26 bp):
TGCATCATAACAAAGACATTCGCATT
Found at i:6758981 original size:23 final size:23
Alignment explanation
Indices: 6758945--6759053 Score: 101
Period size: 23 Copynumber: 4.7 Consensus size: 23
6758935 TTCAGATCAA
**
6758945 ACTTTAAGTTCAGATTAGCTGGC
1 ACTTTAAGCCCAGATTAGCTGGC
* * *
6758968 ATTTTAAGCCCAGATTAGATGAC
1 ACTTTAAGCCCAGATTAGCTGGC
* * *
6758991 ACTTTAAGCCTAGAGTAGCTAGC
1 ACTTTAAGCCCAGATTAGCTGGC
* * * *
6759014 ACTCTAAACCCAAATTAGTTGGC
1 ACTTTAAGCCCAGATTAGCTGGC
*
6759037 ACTTTAAGCCCATATTA
1 ACTTTAAGCCCAGATTA
6759054 ATTAGCACCT
Statistics
Matches: 65, Mismatches: 21, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 65 1.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (23 bp):
ACTTTAAGCCCAGATTAGCTGGC
Found at i:6759451 original size:124 final size:126
Alignment explanation
Indices: 6759263--6759611 Score: 395
Period size: 124 Copynumber: 2.8 Consensus size: 126
6759253 AGGCTCTAGG
* * ** * *
6759263 CAAAACATTTTAAAATTTTAAAGTTTCAACACCTCTACTATAATGAGTGTTCAAAGATTTTGAGA
1 CAAAACATTTTAAATTTTTAAAGTTTCAACACCTATACTATAATGAGCATTCAAAAAATTTGAGA
*
6759328 TTTGTAAAACCTCCAAGCATAATCTCTAAGAACT-TCAAGCATAATCTATAAGACCCCA-GA
66 TTTGTAAAACCTCCAAGCATAATCTCTAAGACCTCT-AAGCATAATCTATAAGACCCCAGGA
*
6759388 CAAAACATTTTAAATTTTTAAAATTTCAACA-CTATACTA-AGATGAGCATTCAAAAAATTTGAG
1 CAAAACATTTTAAATTTTTAAAGTTTCAACACCTATACTATA-ATGAGCATTCAAAAAATTTGAG
* * ** ** *
6759451 ATTTGTAAGACTTCCGGGCATAATCTCTAAGACCTCTAAGCATAATCTATAAGACCTTAGGG
65 ATTTGTAAAACCTCCAAGCATAATCTCTAAGACCTCTAAGCATAATCTATAAGACCCCAGGA
* ** * *
6759513 TAAAACATTTTAAATTTTTAAAGTTTCAATGCCTCT-CTTATAAGGAGCATT-AAAAAATTTTGA
1 CAAAACATTTTAAATTTTTAAAGTTTCAACACCTATAC-TATAATGAGCATTCAAAAAA-TTTGA
* * * * *
6759576 GATTTGTAAGAGCTCCGAGCTTAATTTCTAAGACCT
64 GATTTGTAAAACCTCCAAGCATAATCTCTAAGACCT
6759612 TTGGGCAAAA
Statistics
Matches: 191, Mismatches: 26, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
123 1 0.01
124 75 0.39
125 65 0.34
126 49 0.26
127 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (126 bp):
CAAAACATTTTAAATTTTTAAAGTTTCAACACCTATACTATAATGAGCATTCAAAAAATTTGAGA
TTTGTAAAACCTCCAAGCATAATCTCTAAGACCTCTAAGCATAATCTATAAGACCCCAGGA
Found at i:6759666 original size:104 final size:104
Alignment explanation
Indices: 6759500--6759695 Score: 279
Period size: 104 Copynumber: 1.9 Consensus size: 104
6759490 GCATAATCTA
* * * *
6759500 TAAGACCTTAGGGTAAAACATTTTAAATTTTTAAAGTTTCAATGCCTCTCTTATAAGGAGCATTA
1 TAAGACCTTAGGGCAAAACATTTAAAATTTTTAAAGTTTCAATGCCTCTCTTAGAAGAAGCATTA
*
6759565 AAAAATTTTGAGATTTGTAAGAGCTCCGAGCTTAATTTC
66 AAAAATTTTGAGATTTGTAAGACCTCCGAGCTTAATTTC
* *
6759604 TAAGACCTTTGGGCAAAACATTTAAAATTTTTAAAGTTTCAATGTCTCTAC-TACGAA-AAGCAT
1 TAAGACCTTAGGGCAAAACATTTAAAATTTTTAAAGTTTCAATGCCTCT-CTTA-GAAGAAGCAT
* *
6759667 TCAAAGATTTTGAGATTTGTAAGACCTCC
64 TAAAAAATTTTGAGATTTGTAAGACCTCC
6759696 AGTATAAATT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
104 78 0.96
105 3 0.04
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (104 bp):
TAAGACCTTAGGGCAAAACATTTAAAATTTTTAAAGTTTCAATGCCTCTCTTAGAAGAAGCATTA
AAAAATTTTGAGATTTGTAAGACCTCCGAGCTTAATTTC
Found at i:6759960 original size:24 final size:24
Alignment explanation
Indices: 6759920--6759965 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
6759910 TGATCTTTTG
*
6759920 TTTTATTTTCAAAAGTTATTAAGT
1 TTTTATTTTAAAAAGTTATTAAGT
*
6759944 TTTTA-TTTAAAAGAGTTTTTAA
1 TTTTATTTTAAAA-AGTTATTAA
6759966 ACTTGTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.54
Consensus pattern (24 bp):
TTTTATTTTAAAAAGTTATTAAGT
Found at i:6760021 original size:11 final size:11
Alignment explanation
Indices: 6759998--6760044 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
6759988 TTATTAGTTT
*
6759998 AAAA-AAATGA
1 AAAATAAATCA
6760008 AAAATAAATCA
1 AAAATAAATCA
6760019 AAAAT--A--A
1 AAAATAAATCA
6760026 AAAATAAATCA
1 AAAATAAATCA
6760037 AAAATAAA
1 AAAATAAA
6760045 AAAATCATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
7 6 0.19
9 2 0.06
10 4 0.13
11 19 0.61
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (11 bp):
AAAATAAATCA
Found at i:6760039 original size:29 final size:28
Alignment explanation
Indices: 6759998--6760066 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 28
6759988 TTATTAGTTT
*
6759998 AAAA-AAATGAAAAATAAATCAAAA-ATAA
1 AAAATAAATCAAAAATAAA--AAAACATAA
6760026 AAAATAAATCAAAAATAAAAAAATCATAA
1 AAAATAAATCAAAAATAAAAAAA-CATAA
*
6760055 AAAATCAATCAA
1 AAAATAAATCAA
6760067 GTTAAAAAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
27 4 0.11
28 4 0.11
29 28 0.78
ACGTcount: A:0.75, C:0.07, G:0.01, T:0.16
Consensus pattern (28 bp):
AAAATAAATCAAAAATAAAAAAACATAA
Found at i:6760047 original size:18 final size:18
Alignment explanation
Indices: 6760000--6760047 Score: 87
Period size: 18 Copynumber: 2.7 Consensus size: 18
6759990 ATTAGTTTAA
*
6760000 AAAAATGAAAAATAAATC
1 AAAAATAAAAAATAAATC
6760018 AAAAATAAAAAATAAATC
1 AAAAATAAAAAATAAATC
6760036 AAAAATAAAAAA
1 AAAAATAAAAAA
6760048 ATCATAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (18 bp):
AAAAATAAAAAATAAATC
Found at i:6774364 original size:34 final size:34
Alignment explanation
Indices: 6774324--6774394 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 34
6774314 GAGCTAACAT
*
6774324 ATGGGTGCTCGTTACAAGAACAAGTTCATTGAAC
1 ATGGGTGCTCGTTACAAGAACAAGTTCATTAAAC
* *
6774358 ATGGGTGCTTGTTATAAGAACAAGTTCATTAAAC
1 ATGGGTGCTCGTTACAAGAACAAGTTCATTAAAC
6774392 ATG
1 ATG
6774395 ACCCGATATG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.30
Consensus pattern (34 bp):
ATGGGTGCTCGTTACAAGAACAAGTTCATTAAAC
Found at i:6777139 original size:73 final size:73
Alignment explanation
Indices: 6777044--6777181 Score: 204
Period size: 73 Copynumber: 1.9 Consensus size: 73
6777034 ATGTACTACC
* * *
6777044 TATTAAAATATGCATGAGATGGAATACATTTACCACCTATTAAAATGTGCATGAAATGGAATGCA
1 TATTAAAATATGCATCAAATGGAATACATGTACCACCTATTAAAATGTGCATGAAATGGAATGCA
6777109 GTGCTATT
66 GTGCTATT
* * * * *
6777117 TATTAAAATATGCATCAAATGGAATGCGTGTACTATCTATTAATATGTGCATGAAATGGAATGCA
1 TATTAAAATATGCATCAAATGGAATACATGTACCACCTATTAAAATGTGCATGAAATGGAATGCA
6777182 TGCACTATTT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
73 57 1.00
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (73 bp):
TATTAAAATATGCATCAAATGGAATACATGTACCACCTATTAAAATGTGCATGAAATGGAATGCA
GTGCTATT
Found at i:6777168 original size:37 final size:37
Alignment explanation
Indices: 6777000--6777189 Score: 193
Period size: 37 Copynumber: 5.2 Consensus size: 37
6776990 GAAATGTATA
* ** ** *
6777000 TACTATCTATTAAAATGTAAATGGCATGAAATGCATG
1 TACTATCTATTAAAATATGCATGAAATGGAATGCATG
* * * *
6777037 TACTACCTATTAAAATATGCATGAGATGGAATACATT
1 TACTATCTATTAAAATATGCATGAAATGGAATGCATG
* * *
6777074 TACCACCTATTAAAATGTGCATGAAATGGAATGCA-G
1 TACTATCTATTAAAATATGCATGAAATGGAATGCATG
* * * *
6777110 TGCTATTTATTAAAATATGCATCAAATGGAATGCGTG
1 TACTATCTATTAAAATATGCATGAAATGGAATGCATG
* *
6777147 TACTATCTATTAATATGTGCATGAAATGGAATGCATG
1 TACTATCTATTAAAATATGCATGAAATGGAATGCATG
*
6777184 CACTAT
1 TACTAT
6777190 TTTATTATTT
Statistics
Matches: 124, Mismatches: 28, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
36 28 0.23
37 96 0.77
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (37 bp):
TACTATCTATTAAAATATGCATGAAATGGAATGCATG
Found at i:6778260 original size:22 final size:21
Alignment explanation
Indices: 6778215--6778260 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 21
6778205 TTTTTTTTAC
6778215 TTTTTTCAAAATTTTCAAACTT
1 TTTTTTCAAAATTTTC-AACTT
6778237 TTTTTTCCAAAATTTTC-ACTT
1 TTTTTT-CAAAATTTTCAACTT
6778258 TTT
1 TTT
6778261 AAGAAAACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 7 0.30
22 6 0.26
23 10 0.43
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTTTCAAAATTTTCAACTT
Found at i:6778821 original size:25 final size:25
Alignment explanation
Indices: 6778792--6778840 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
6778782 ATTTTTTCTT
*
6778792 TGAAAGCAAATCAATTTATATTTTA
1 TGAAAGCAAAACAATTTATATTTTA
* *
6778817 TGAAAGCAAAACATTTTATTTTTT
1 TGAAAGCAAAACAATTTATATTTT
6778841 TTGGATCAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (25 bp):
TGAAAGCAAAACAATTTATATTTTA
Found at i:6779064 original size:20 final size:20
Alignment explanation
Indices: 6779039--6779077 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
6779029 TATTTGAGAG
6779039 ATCATCTTATTTAAAAAAAA
1 ATCATCTTATTTAAAAAAAA
6779059 ATCATCTTATTTAAAAAAA
1 ATCATCTTATTTAAAAAAA
6779078 TATATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.36
Consensus pattern (20 bp):
ATCATCTTATTTAAAAAAAA
Found at i:6779316 original size:19 final size:19
Alignment explanation
Indices: 6779292--6779360 Score: 72
Period size: 19 Copynumber: 3.7 Consensus size: 19
6779282 AGATTTAGGA
6779292 TCTAGGTTCA-GGTTTGGGG
1 TCTAGGTT-AGGGTTTGGGG
6779311 TCTAGGTTAGGGTTTGGGG
1 TCTAGGTTAGGGTTTGGGG
* *
6779330 T-TAGGTTTAGGGCTTAGGG
1 TCTAGG-TTAGGGTTTGGGG
*
6779349 T-TAGTTTAGGGT
1 TCTAGGTTAGGGT
6779361 CTAGGTTGGG
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
18 11 0.25
19 33 0.75
ACGTcount: A:0.13, C:0.06, G:0.42, T:0.39
Consensus pattern (19 bp):
TCTAGGTTAGGGTTTGGGG
Found at i:6779336 original size:18 final size:18
Alignment explanation
Indices: 6779302--6779360 Score: 73
Period size: 19 Copynumber: 3.2 Consensus size: 18
6779292 TCTAGGTTCA
6779302 GGTTTGGGGTCTAGGTTAG
1 GGTTTGGGGT-TAGGTTAG
6779321 GGTTTGGGGTTAGGTTTAG
1 GGTTTGGGGTTAGG-TTAG
* * *
6779340 GGCTTAGGGTTAGTTTAG
1 GGTTTGGGGTTAGGTTAG
6779358 GGT
1 GGT
6779361 CTAGGTTGGG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
18 10 0.29
19 25 0.71
ACGTcount: A:0.12, C:0.03, G:0.46, T:0.39
Consensus pattern (18 bp):
GGTTTGGGGTTAGGTTAG
Found at i:6779366 original size:31 final size:30
Alignment explanation
Indices: 6779322--6779447 Score: 96
Period size: 31 Copynumber: 4.0 Consensus size: 30
6779312 CTAGGTTAGG
*
6779322 GTTTGGGGTTAGGTTTAGGGC-TTAGGG-TTA
1 GTTTAGGGTTAGG-TT-GGGCTTTAGGGTTTA
6779352 GTTTAGGGTCTAGGTTGGGCTTTAGGGTTTA
1 GTTTAGGGT-TAGGTTGGGCTTTAGGGTTTA
* *
6779383 GTTTAGGATTTAAGGTTTGG-TTTAGGGGTTTA
1 GTTTAGG-GTT-AGGTTGGGCTTTA-GGGTTTA
* * *
6779415 GGGTTTAAGGTTAAGTTTGGGGTTTAGGGTTTA
1 --GTTTAGGGTT-AGGTTGGGCTTTAGGGTTTA
6779448 AGGTTTGATT
Statistics
Matches: 80, Mismatches: 7, Indels: 15
0.78 0.07 0.15
Matches are distributed among these distances:
29 4 0.05
30 16 0.20
31 19 0.24
32 15 0.19
33 16 0.20
34 10 0.12
ACGTcount: A:0.16, C:0.02, G:0.39, T:0.43
Consensus pattern (30 bp):
GTTTAGGGTTAGGTTGGGCTTTAGGGTTTA
Found at i:6779389 original size:68 final size:69
Alignment explanation
Indices: 6779285--6779419 Score: 157
Period size: 68 Copynumber: 2.0 Consensus size: 69
6779275 TTGGAGTAGA
* * **
6779285 TTTAGGATCTAGGTTCAGGTTTGGGGTCTAGGTTAGGGTTTGGGGTTAGGTTTA-GGGCTTAGGG
1 TTTAGGATCTAGGTTCAGGTTTAGGGTCTAGGTTAGGATTTAAGGTTAGGTTTAGGGGCTTAGGG
6779349 TTAG
66 TTAG
* * * * * *
6779353 TTTAGGGTCTAGGTT-GGGCTTTAGGGTTTAGTTTAGGATTTAAGGTTTGGTTTAGGGGTTTAGG
1 TTTAGGATCTAGGTTCAGG-TTTAGGGTCTAGGTTAGGATTTAAGGTTAGGTTTAGGGGCTTAGG
6779417 GTT
65 GTT
6779420 TAAGGTTAAG
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
67 2 0.04
68 42 0.76
69 11 0.20
ACGTcount: A:0.15, C:0.04, G:0.39, T:0.41
Consensus pattern (69 bp):
TTTAGGATCTAGGTTCAGGTTTAGGGTCTAGGTTAGGATTTAAGGTTAGGTTTAGGGGCTTAGGG
TTAG
Found at i:6779414 original size:8 final size:7
Alignment explanation
Indices: 6779317--6779472 Score: 83
Period size: 7 Copynumber: 24.3 Consensus size: 7
6779307 GGGGTCTAGG
6779317 TTAGGGT
1 TTAGGGT
*
6779324 TT-GGGG
1 TTAGGGT
6779330 TTA-GGT
1 TTAGGGT
*
6779336 TTAGGGC
1 TTAGGGT
6779343 TTAGGG-
1 TTAGGGT
6779349 TTA--GT
1 TTAGGGT
6779354 TTAGGGT
1 TTAGGGT
*
6779361 CTA-GG-
1 TTAGGGT
6779366 TT-GGGCT
1 TTAGGG-T
6779373 TTAGGGT
1 TTAGGGT
6779380 TTA--GT
1 TTAGGGT
*
6779385 TTAGGAT
1 TTAGGGT
*
6779392 TTAAGGT
1 TTAGGGT
6779399 TT--GGT
1 TTAGGGT
6779404 TTAGGGGT
1 TTA-GGGT
6779412 TTAGGGT
1 TTAGGGT
*
6779419 TTAAGG-
1 TTAGGGT
*
6779425 TTA-AGT
1 TTAGGGT
*
6779431 TTGGGGT
1 TTAGGGT
6779438 TTAGGGT
1 TTAGGGT
*
6779445 TTAAGGT
1 TTAGGGT
*
6779452 TT--GAT
1 TTAGGGT
6779457 TTAGGGT
1 TTAGGGT
*
6779464 TTTGGGT
1 TTAGGGT
6779471 TT
1 TT
6779473 GTTTAGGGTC
Statistics
Matches: 114, Mismatches: 17, Indels: 36
0.68 0.10 0.22
Matches are distributed among these distances:
4 1 0.01
5 21 0.18
6 20 0.18
7 63 0.55
8 9 0.08
ACGTcount: A:0.15, C:0.02, G:0.38, T:0.44
Consensus pattern (7 bp):
TTAGGGT
Found at i:6779419 original size:20 final size:19
Alignment explanation
Indices: 6779353--6779421 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
6779343 TTAGGGTTAG
* * * *
6779353 TTTAGGGTCTAGGTTGGGC
1 TTTAGGGTTTAGTTTAGGA
6779372 TTTAGGGTTTAGTTTAGGA
1 TTTAGGGTTTAGTTTAGGA
* * *
6779391 TTTAAGGTTTGGTTTAGGGG
1 TTTAGGGTTTAGTTTA-GGA
6779411 TTTAGGGTTTA
1 TTTAGGGTTTA
6779422 AGGTTAAGTT
Statistics
Matches: 40, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
19 29 0.73
20 11 0.28
ACGTcount: A:0.16, C:0.03, G:0.36, T:0.45
Consensus pattern (19 bp):
TTTAGGGTTTAGTTTAGGA
Found at i:6779463 original size:26 final size:26
Alignment explanation
Indices: 6779383--6779472 Score: 110
Period size: 26 Copynumber: 3.4 Consensus size: 26
6779373 TTAGGGTTTA
* *
6779383 GTTTAGGATTTAAGGTTTGGTTTAGGG
1 GTTTAGGGTTTAAGGTTTGATTTA-GG
* *
6779410 GTTTAGGGTTTAAGG-TTAAGTTTGGG
1 GTTTAGGGTTTAAGGTTTGA-TTTAGG
6779436 GTTTAGGGTTTAAGGTTTGATTTAGG
1 GTTTAGGGTTTAAGGTTTGATTTAGG
*
6779462 GTTTTGGGTTT
1 GTTTAGGGTTT
6779473 GTTTAGGGTC
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
26 34 0.63
27 20 0.37
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (26 bp):
GTTTAGGGTTTAAGGTTTGATTTAGG
Found at i:6779479 original size:18 final size:18
Alignment explanation
Indices: 6779372--6779481 Score: 70
Period size: 19 Copynumber: 6.1 Consensus size: 18
6779362 TAGGTTGGGC
* *
6779372 TTTAGGGTTTAGTTTAGGA
1 TTTAAGGTTT-GTTTAGGG
6779391 TTTAAGGTTTGGTTTAGGGG
1 TTTAAGGTTT-GTTTA-GGG
*
6779411 TTT-AGG---GTTTAAGG
1 TTTAAGGTTTGTTTAGGG
6779425 -TTAA-GTTTGGGGTTTAGGG
1 TTTAAGGTTT---GTTTAGGG
6779444 TTTAAGGTTTGATTTAGGG
1 TTTAAGGTTTG-TTTAGGG
**
6779463 TTTTGGGTTTGTTTAGGG
1 TTTAAGGTTTGTTTAGGG
6779481 T
1 T
6779482 CTCGATTAGG
Statistics
Matches: 73, Mismatches: 7, Indels: 23
0.71 0.07 0.22
Matches are distributed among these distances:
13 3 0.04
14 3 0.04
15 5 0.07
18 9 0.12
19 40 0.55
20 9 0.12
21 4 0.05
ACGTcount: A:0.16, C:0.00, G:0.36, T:0.47
Consensus pattern (18 bp):
TTTAAGGTTTGTTTAGGG
Found at i:6779491 original size:30 final size:30
Alignment explanation
Indices: 6779457--6779522 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
6779447 AAGGTTTGAT
* *
6779457 TTAGGGTTTTGGGTTTGTTTAGGGTCTCGA
1 TTAGGGTGTAGGGTTTGTTTAGGGTCTCGA
* *
6779487 TTAGGGTGTAGGGTTTGTTTAGGGTCTGGT
1 TTAGGGTGTAGGGTTTGTTTAGGGTCTCGA
6779517 TTAGGG
1 TTAGGG
6779523 GTTTCATGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.11, C:0.05, G:0.41, T:0.44
Consensus pattern (30 bp):
TTAGGGTGTAGGGTTTGTTTAGGGTCTCGA
Found at i:6783802 original size:11 final size:13
Alignment explanation
Indices: 6783771--6783816 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 13
6783761 ATCAAAAATT
*
6783771 ATATT-TTTTGAA
1 ATATTATTTTTAA
6783783 ATATTA-TTTTAA
1 ATATTATTTTTAA
6783795 AT-TTATTTTTAA
1 ATATTATTTTTAA
*
6783807 ATAATATTTT
1 ATATTATTTT
6783817 ACATAAAAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
11 3 0.10
12 20 0.69
13 6 0.21
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (13 bp):
ATATTATTTTTAA
Found at i:6783808 original size:24 final size:27
Alignment explanation
Indices: 6783766--6783817 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 27
6783756 GGAGTATCAA
*
6783766 AAATTATATTTTTTGAAATATTATTTT
1 AAATTATATTTTTTGAAATAATATTTT
6783793 AAATT-TA-TTTTT-AAATAATATTTT
1 AAATTATATTTTTTGAAATAATATTTT
6783817 A
1 A
6783818 CATAAAAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 12 0.50
25 5 0.21
26 2 0.08
27 5 0.21
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (27 bp):
AAATTATATTTTTTGAAATAATATTTT
Found at i:6784887 original size:10 final size:10
Alignment explanation
Indices: 6784872--6784896 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
6784862 AAGTTTTGTT
6784872 TTATTATTTA
1 TTATTATTTA
6784882 TTATTATTTA
1 TTATTATTTA
6784892 TTATT
1 TTATT
6784897 TCTTTAGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTATTATTTA
Found at i:6792187 original size:15 final size:15
Alignment explanation
Indices: 6792158--6792207 Score: 59
Period size: 14 Copynumber: 3.3 Consensus size: 15
6792148 CCTTTTCATT
*
6792158 ATTTTTT-ATTATTTT
1 ATTTTTTGATT-TTTG
6792173 ATTATTTTGATTTTTG
1 ATT-TTTTGATTTTTG
6792189 ATTTTTTGA-TTTTG
1 ATTTTTTGATTTTTG
6792203 ATTTT
1 ATTTT
6792208 GATTTTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
14 10 0.31
15 9 0.28
16 10 0.31
17 3 0.09
ACGTcount: A:0.18, C:0.00, G:0.08, T:0.74
Consensus pattern (15 bp):
ATTTTTTGATTTTTG
Found at i:6792189 original size:7 final size:7
Alignment explanation
Indices: 6792177--6792214 Score: 53
Period size: 6 Copynumber: 5.6 Consensus size: 7
6792167 TATTTTATTA
6792177 TTTTGAT
1 TTTTGAT
6792184 TTTTGATT
1 TTTTGA-T
6792192 TTTTGA-
1 TTTTGAT
6792198 TTTTGA-
1 TTTTGAT
6792204 TTTTGAT
1 TTTTGAT
6792211 TTTT
1 TTTT
6792215 TTTTTTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 12 0.41
7 10 0.34
8 7 0.24
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.74
Consensus pattern (7 bp):
TTTTGAT
Found at i:6792200 original size:21 final size:19
Alignment explanation
Indices: 6792168--6792219 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 19
6792158 ATTTTTTATT
6792168 ATTTTATTATTTTGATTTTTG
1 ATTTT-TTATTTTGA-TTTTG
6792189 ATTTTTTGATTTTGATTTTG
1 ATTTTTT-ATTTTGATTTTG
6792209 ATTTTTT-TTTT
1 ATTTTTTATTTT
6792220 TTTTTAAGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.13
20 14 0.47
21 12 0.40
ACGTcount: A:0.15, C:0.00, G:0.10, T:0.75
Consensus pattern (19 bp):
ATTTTTTATTTTGATTTTG
Found at i:6792692 original size:99 final size:99
Alignment explanation
Indices: 6792484--6792694 Score: 284
Period size: 99 Copynumber: 2.2 Consensus size: 99
6792474 AGAATCTAGA
* *
6792484 CTTAAA-TTTTT-ATTGGTACCATATAATCTGGGCTTAAATTTTCATTGATGCTAGCTAAACTGG
1 CTTAAATTTTTTCATTGGTACCAAATAATCTGAGCTTAAATTTTCATTGATGCTAGCTAAACTGG
* * * *
6792547 ATTTAAATTTTCATTGGGTGTCAGCTAAATTGGG
66 ACTTAAATTTGCATTAGGTGTCAGCTAAACTGGG
* ** * *
6792581 CTTAAATCTTTTCATTGGTATTAAATAATCTGAGCTTAAATTTTCATTGGTGCTAGCTAAA-TTG
1 CTTAAATTTTTTCATTGGTACCAAATAATCTGAGCTTAAATTTTCATTGATGCTAGCTAAACTGG
6792645 AGCTTAAATTTGCATTAGGTGTCAGCTAAACTGGG
66 A-CTTAAATTTGCATTAGGTGTCAGCTAAACTGGG
*
6792680 TTTAAATTTTTTCAT
1 CTTAAATTTTTTCAT
6792695 GGATGCTTGC
Statistics
Matches: 98, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
97 6 0.06
98 7 0.07
99 85 0.87
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.42
Consensus pattern (99 bp):
CTTAAATTTTTTCATTGGTACCAAATAATCTGAGCTTAAATTTTCATTGATGCTAGCTAAACTGG
ACTTAAATTTGCATTAGGTGTCAGCTAAACTGGG
Found at i:6792717 original size:99 final size:99
Alignment explanation
Indices: 6792514--6792819 Score: 297
Period size: 99 Copynumber: 3.1 Consensus size: 99
6792504 ATATAATCTG
* * * * *
6792514 GGCTTAAATTTTCATTGATGCTAGCTAAACTG-GATTTAAATTTTCATTGGGTGTCAGCTAAATT
1 GGCTTAAATTTTCATTGGTGCTAGCTAAATTGAGACTTAAATTTTCATTAGGTGTCAGCTAAACT
* *
6792578 GGGCTTAAATCTTTTCATTGGTAT--TAAATAATCT-
66 GGGCTTAAAT-TTTTCA-TGG-ATGCTAGATAAACTA
*
6792612 GAGCTTAAATTTTCATTGGTGCTAGCTAAATTGAG-CTTAAATTTGCATTAGGTGTCAGCTAAAC
1 G-GCTTAAATTTTCATTGGTGCTAGCTAAATTGAGACTTAAATTTTCATTAGGTGTCAGCTAAAC
* * *
6792676 TGGGTTTAAATTTTTTCATGGATGCTTGCTAAACTA
65 TGGGCTTAAA-TTTTTCATGGATGCTAGATAAACTA
* * * *
6792712 GGCTTACATTTTCATTAGGTGCCAGAT-AATCT-AGACTTAAATTTTTCATTAAGTG-CTAGCTA
1 GGCTTAAATTTTCATT-GGTGCTAGCTAAAT-TGAGACTTAAA-TTTTCATTAGGTGTC-AGCTA
* * *
6792774 GACTGGGCTTAAA-TTTTCATTGAGTGCTAGTTAAACTA
62 AACTGGGCTTAAATTTTTCATGGA-TGCTAGATAAACTA
6792812 GGCTTAAA
1 GGCTTAAA
6792820 GCCTCATAAA
Statistics
Matches: 174, Mismatches: 22, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
97 2 0.01
98 4 0.02
99 103 0.59
100 38 0.22
101 27 0.16
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.39
Consensus pattern (99 bp):
GGCTTAAATTTTCATTGGTGCTAGCTAAATTGAGACTTAAATTTTCATTAGGTGTCAGCTAAACT
GGGCTTAAATTTTTCATGGATGCTAGATAAACTA
Found at i:6792800 original size:33 final size:33
Alignment explanation
Indices: 6792407--6792819 Score: 238
Period size: 32 Copynumber: 12.5 Consensus size: 33
6792397 CTTATATGTC
* * * * * *
6792407 AGCTAATCTGGGCTTAACTTTGCATTGGGTACC
1 AGCTAAACTGGGCTTAAATTTTCATTGAGTGCT
** * *
6792440 AGCTAGTCTAGGCTTAAATTTGCATT-AGTGCT
1 AGCTAAACTGGGCTTAAATTTTCATTGAGTGCT
* * * * *
6792472 A--TAGAATCTAGACTTAAATTTTTATTG-GTACC
1 AGCTA-AA-CTGGGCTTAAATTTTCATTGAGTGCT
** *
6792504 ATATAATCTGGGCTTAAATTTTCATTGA-TGCT
1 AGCTAAACTGGGCTTAAATTTTCATTGAGTGCT
** *
6792536 AGCTAAACTGGATTTAAATTTTCATTGGGTG-T
1 AGCTAAACTGGGCTTAAATTTTCATTGAGTGCT
* **
6792568 CAGCTAAATTGGGCTTAAATCTTTTCATTG-GTATT
1 -AGCTAAACTGGGCTTAAA--TTTTCATTGAGTGCT
** * *
6792603 AAATAATCTGAGCTTAAATTTTCATTG-GTGCT
1 AGCTAAACTGGGCTTAAATTTTCATTGAGTGCT
* * *
6792635 AGCTAAATTGAGCTTAAATTTGCATT-AGGTG-T
1 AGCTAAACTGGGCTTAAATTTTCATTGA-GTGCT
* *
6792667 CAGCTAAACTGGGTTTAAATTTTTTCATGGA-TGCT
1 -AGCTAAACTGGGCTTAAA--TTTTCATTGAGTGCT
* * * *
6792702 TGCTAAACTAGGCTTACATTTTCATT-AGGTGCC
1 AGCTAAACTGGGCTTAAATTTTCATTGA-GTGCT
* * * * *
6792735 AGATAATCTAGACTTAAATTTTTCATTAAGTGCT
1 AGCTAAACTGGGCTTAAA-TTTTCATTGAGTGCT
*
6792769 AGCTAGACTGGGCTTAAATTTTCATTGAGTGCT
1 AGCTAAACTGGGCTTAAATTTTCATTGAGTGCT
* *
6792802 AGTTAAACTAGGCTTAAA
1 AGCTAAACTGGGCTTAAA
6792820 GCCTCATAAA
Statistics
Matches: 291, Mismatches: 67, Indels: 44
0.72 0.17 0.11
Matches are distributed among these distances:
30 2 0.01
31 1 0.00
32 107 0.37
33 104 0.36
34 58 0.20
35 18 0.06
36 1 0.00
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.39
Consensus pattern (33 bp):
AGCTAAACTGGGCTTAAATTTTCATTGAGTGCT
Found at i:6792818 original size:67 final size:65
Alignment explanation
Indices: 6792450--6792819 Score: 229
Period size: 67 Copynumber: 5.6 Consensus size: 65
6792440 AGCTAGTCTA
* * * * * * * * ** *
6792450 GGCTTAAATTTGCATT-AGTGCTATAGAATCTAGACTTAAATTTTTATTG-GTACCATATAATCT
1 GGCTTAAATTTTCATTGAGTGCTAGATAAACT-GGCTTAAATTTTCATTGAGTGCTAGCTAAACT
6792513 G
65 G
* * * *
6792514 GGCTTAAATTTTCATTGA-TGCTAGCTAAACTGGATTTAAATTTTCATTGGGTG-TCAGCTAAAT
1 GGCTTAAATTTTCATTGAGTGCTAGATAAACTGG-CTTAAATTTTCATTGAGTGCT-AGCTAAAC
6792577 TG
64 TG
** * *
6792579 GGCTTAAATCTTTTCATTG-GTATTAAATAATCTGAGCTTAAATTTTCATTG-GTGCTAGCTAAA
1 GGCTTAAA--TTTTCATTGAGTGCTAGATAAACTG-GCTTAAATTTTCATTGAGTGCTAGCTAAA
*
6792642 TTG
63 CTG
* * * * * *
6792645 AGCTTAAATTTGCATT-AGGTG-TCAGCTAAACTGGGTTTAAATTTTTTCATGGA-TGCTTGCTA
1 GGCTTAAATTTTCATTGA-GTGCT-AGATAAACT-GGCTTAAA--TTTTCATTGAGTGCTAGCTA
*
6792707 AACTA
61 AACTG
* * * * * *
6792712 GGCTTACATTTTCATT-AGGTGCCAGATAATCTAGACTTAAATTTTTCATTAAGTGCTAGCTAGA
1 GGCTTAAATTTTCATTGA-GTGCTAGATAAACT-GGCTTAAA-TTTTCATTGAGTGCTAGCTAAA
6792776 CTG
63 CTG
*
6792779 GGCTTAAATTTTCATTGAGTGCTAGTTAAACTAGGCTTAAA
1 GGCTTAAATTTTCATTGAGTGCTAGATAAACT-GGCTTAAA
6792820 GCCTCATAAA
Statistics
Matches: 237, Mismatches: 50, Indels: 35
0.74 0.16 0.11
Matches are distributed among these distances:
63 1 0.00
64 45 0.19
65 31 0.13
66 30 0.13
67 128 0.54
68 2 0.01
ACGTcount: A:0.29, C:0.13, G:0.18, T:0.39
Consensus pattern (65 bp):
GGCTTAAATTTTCATTGAGTGCTAGATAAACTGGCTTAAATTTTCATTGAGTGCTAGCTAAACTG
Found at i:6794831 original size:21 final size:19
Alignment explanation
Indices: 6794804--6794859 Score: 60
Period size: 21 Copynumber: 2.9 Consensus size: 19
6794794 GTCAAAACCA
*
6794804 ATTTTTTTATCCTTTTTTCCC
1 ATTTTTTTTTCCTTTTTT--C
* *
6794825 TTTTTTTTTTCATTTTTTC
1 ATTTTTTTTTCCTTTTTTC
6794844 ATTTTTTTTT-CTTTTT
1 ATTTTTTTTTCCTTTTT
6794860 GATATGCCCC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 5 0.17
19 10 0.33
21 15 0.50
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (19 bp):
ATTTTTTTTTCCTTTTTTC
Found at i:6804773 original size:12 final size:14
Alignment explanation
Indices: 6804758--6804793 Score: 58
Period size: 12 Copynumber: 2.7 Consensus size: 14
6804748 TCACCTAGAG
6804758 TTTAGGGTTTT-A-
1 TTTAGGGTTTTAAT
6804770 TTTAGGGTTTTAAT
1 TTTAGGGTTTTAAT
6804784 TTTAGGGTTT
1 TTTAGGGTTT
6804794 CACTTGTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 11 0.50
13 1 0.05
14 10 0.45
ACGTcount: A:0.17, C:0.00, G:0.25, T:0.58
Consensus pattern (14 bp):
TTTAGGGTTTTAAT
Found at i:6805571 original size:41 final size:42
Alignment explanation
Indices: 6805502--6805582 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 42
6805492 TACACATAGC
* * *
6805502 CATGGAGTTTGAAAGACATATGAGCCTTAGCAATTAAATTTG
1 CATGGAATTTGAAAGACATATAAGCCTTAGCAATCAAATTTG
6805544 CATGGAATTTGAAA-ACATATAAGCCTTAGCAATCAAATT
1 CATGGAATTTGAAAGACATATAAGCCTTAGCAATCAAATT
6805583 CCGTGTAAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
41 23 0.64
42 13 0.36
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.30
Consensus pattern (42 bp):
CATGGAATTTGAAAGACATATAAGCCTTAGCAATCAAATTTG
Found at i:6806923 original size:3 final size:3
Alignment explanation
Indices: 6806917--6806948 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
6806907 TTTTTTTTAC
6806917 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
6806949 TATTTTTTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:6813684 original size:25 final size:25
Alignment explanation
Indices: 6813656--6813707 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
6813646 CTTAACTGTC
6813656 CAACAGTCAGTTTCATATAACAATG
1 CAACAGTCAGTTTCATATAACAATG
**
6813681 CAACAGTCAGTTTTGTATAACAATG
1 CAACAGTCAGTTTCATATAACAATG
6813706 CA
1 CA
6813708 TGCCTTACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.29
Consensus pattern (25 bp):
CAACAGTCAGTTTCATATAACAATG
Found at i:6813787 original size:25 final size:25
Alignment explanation
Indices: 6813753--6813805 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
6813743 CTTTAATGGC
*
6813753 ATGTTACGATTACACAATATAGTCG
1 ATGTTACGATCACACAATATAGTCG
6813778 ATGTTACGATCACACAATATAGTCG
1 ATGTTACGATCACACAATATAGTCG
6813803 ATG
1 ATG
6813806 CATTTTGCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (25 bp):
ATGTTACGATCACACAATATAGTCG
Found at i:6817158 original size:19 final size:19
Alignment explanation
Indices: 6817134--6817172 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
6817124 AAAGCTTTTC
6817134 TATTTTCATTACTTTTCTT
1 TATTTTCATTACTTTTCTT
* *
6817153 TATTTTCTTTTCTTTTCTT
1 TATTTTCATTACTTTTCTT
6817172 T
1 T
6817173 CCCCTTCTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.74
Consensus pattern (19 bp):
TATTTTCATTACTTTTCTT
Found at i:6817330 original size:6 final size:6
Alignment explanation
Indices: 6817320--6817366 Score: 60
Period size: 6 Copynumber: 7.8 Consensus size: 6
6817310 ATTGAATCCT
* *
6817320 TTTTAT TTTTAT TTTTTAG TTTTAG TTTTAG TTTTAG TTTTA- TTTTA
1 TTTTAG TTTTAG T-TTTAG TTTTAG TTTTAG TTTTAG TTTTAG TTTTA
6817367 TCCTTTTTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
5 5 0.13
6 29 0.74
7 5 0.13
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (6 bp):
TTTTAG
Found at i:6820551 original size:56 final size:55
Alignment explanation
Indices: 6820438--6820557 Score: 141
Period size: 56 Copynumber: 2.2 Consensus size: 55
6820428 TACTGACGCT
* * ** * * *
6820438 TATAGATTTGTATGTTTTAATTTTCTTACCTATACTGACGGCTAGCGCCCATTAG
1 TATAGACTTATATGTTTTAATTTTCTTACCTATACCAACGACTAACGCCCATCAG
* * *
6820493 TATAGACTTATATGTTTTAATTTTTCTTACCTATACCAATGATTAACGCCTATCAG
1 TATAGACTTATATGTTTTAA-TTTTCTTACCTATACCAACGACTAACGCCCATCAG
6820549 TATAGACTT
1 TATAGACTT
6820558 GTAATTTATC
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
55 18 0.33
56 36 0.67
ACGTcount: A:0.28, C:0.17, G:0.12, T:0.42
Consensus pattern (55 bp):
TATAGACTTATATGTTTTAATTTTCTTACCTATACCAACGACTAACGCCCATCAG
Found at i:6828254 original size:63 final size:63
Alignment explanation
Indices: 6828158--6828279 Score: 158
Period size: 63 Copynumber: 1.9 Consensus size: 63
6828148 AATCCTCTTT
* * **
6828158 AATTTTTATGAAGGGATTATTGAATGTGTTTTTTTCAAAAAAAATGTCTTG-AATAATCCCTAAA
1 AATTTTTATGAAGAGATTATTGAAGGCATTTTTTT-AAAAAAAATGT-TTGTAATAATCCCTAAA
**
6828222 AATTTTTAT-AAGAGATTATTGAAGGCATTTTTTTACCAAAAATGTTTGTAATAATCCC
1 AATTTTTATGAAGAGATTATTGAAGGCATTTTTTTAAAAAAAATGTTTGTAATAATCCC
6828280 CTTCATTTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
61 3 0.06
62 18 0.35
63 21 0.41
64 9 0.18
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.41
Consensus pattern (63 bp):
AATTTTTATGAAGAGATTATTGAAGGCATTTTTTTAAAAAAAATGTTTGTAATAATCCCTAAA
Found at i:6829120 original size:291 final size:290
Alignment explanation
Indices: 6828375--6829201 Score: 1047
Period size: 297 Copynumber: 2.8 Consensus size: 290
6828365 TTATTAAAGG
*
6828375 AATCCCTTTATATTTTTTATGAATG-GATTATTCAAGGCATTTTTTGCCAAAAAAGCCTTCAATA
1 AATCCCTTTA-ATTTTTTA-G-ATGAGATTATTCAAGGCATTTTTTGCCAAAAATGCCTTCAATA
* *
6828439 ATCCTCTCCTATTTGTTTTAGGATCATTCAAGGTATTTTTGTGATAAAATACCTCGAATAATCTC
63 ATCCTCTCC-CTTT-TTTTAGGATCATTCAAGGTATTTTTGTGATAAAACACCT-GAATAATC-C
* *
6828504 C-TTCAGGCATTTATAAAGAGATTCTTGAAGGTGTTTTTGCTTAGAAAATACCTTGAATAATTCC
124 CTTTCAGGCATTTATAAAGAGATTATTGAAGGTGTTTTTGCCTAGAAAATACCTTGAATAA-TCC
* * * *
6828568 TAACAAAATATTGAATAGGGGTTATTAAAGACATTTTTGGCCAAAAATGCCTTGAATAATTCCTG
188 TAACAAAATATTGAAT-GGGGTTATTGAAGGCGTTTTTGGCCAAAAACGCCTTGAATAATTCCTG
* * *
6828633 AATTAGTGTAAAGGCGTTTTTGGCCAAAAATGCATTTAAT
252 AACTAGTG-AAAGACATTTTTGGCCAAAAATGCATTTAAT
* ** * *
6828673 AATCCCTTTCAATTTTTTAGAGGAGATTATTCAAGGCATTTTTTATC-AAAATCACCTTTAATAA
1 AATCCCTTT-AATTTTTTAGATGAGATTATTCAAGGCATTTTTTGCCAAAAAT-GCCTTCAATAA
* * *
6828737 CCCTCTCCCATTTTTTTTAGGATCATTCAAGGTATTTTTGTGATAAAACACTTTAAATAATCCCT
64 TCCTCTCCC--TTTTTTTAGGATCATTCAAGGTATTTTTGTGATAAAACAC-CTGAATAATCCCT
* * * *
6828802 TTTAGGCATTTATAAAGAGATTATTGAAGATGTTTTTGCCCAAAAAATACCTTGAATAATCCTTA
126 TTCAGGCATTTATAAAGAGATTATTGAAGGTGTTTTTGCCTAGAAAATACCTTGAATAATCC-TA
* * * *
6828867 ACAAAATATTGAATGGGGTTATTGAAGGCGTTTCTAGCCAAAAACGCCTTGAATAATTCTTGGAC
190 ACAAAATATTGAATGGGGTTATTGAAGGCGTTTTTGGCCAAAAACGCCTTGAATAATTCCTGAAC
*
6828932 TAGTG-AAGACATTTTTGGCCAAAAATGCCTTTAAT
255 TAGTGAAAGACATTTTTGGCCAAAAATGCATTTAAT
** *
6828967 AATGCCCTTTAATTTTTTAGATGAGATTATTCAAGGTGTTTTCTGCCAAAAATGCCTTCAATAAT
1 AAT-CCCTTTAATTTTTTAGATGAGATTATTCAAGGCATTTTTTGCCAAAAATGCCTTCAATAA-
* *
6829032 TCC-CTCCCTTTTTTTA-GACCATTCAAGGTATTTTTATGATAAAACACCATGAATAATCCCTTT
64 TCCTCTCCCTTTTTTTAGGATCATTCAAGGTATTTTTGTGATAAAACACC-TGAATAATCCCTTT
* * ** * *
6829095 CAAGCATTTAT-GAGTAGATTATTGAAGGCATTTTTACCTAGAAAATGCCTTGAATAATCCCTAA
128 CAGGCATTTATAAAG-AGATTATTGAAGGTGTTTTTGCCTAGAAAATACCTTGAATAAT-CCTAA
*
6829159 CAAAATATTAAATGGGGTTATTGAAGGCGTTTTTGGCCAAAAA
191 CAAAATATTGAATGGGGTTATTGAAGGCGTTTTTGGCCAAAAA
6829202 TACCTTCAAT
Statistics
Matches: 460, Mismatches: 55, Indels: 35
0.84 0.10 0.06
Matches are distributed among these distances:
290 2 0.00
291 130 0.28
292 10 0.02
294 75 0.16
295 13 0.03
296 58 0.13
297 150 0.33
298 21 0.05
299 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.37
Consensus pattern (290 bp):
AATCCCTTTAATTTTTTAGATGAGATTATTCAAGGCATTTTTTGCCAAAAATGCCTTCAATAATC
CTCTCCCTTTTTTTAGGATCATTCAAGGTATTTTTGTGATAAAACACCTGAATAATCCCTTTCAG
GCATTTATAAAGAGATTATTGAAGGTGTTTTTGCCTAGAAAATACCTTGAATAATCCTAACAAAA
TATTGAATGGGGTTATTGAAGGCGTTTTTGGCCAAAAACGCCTTGAATAATTCCTGAACTAGTGA
AAGACATTTTTGGCCAAAAATGCATTTAAT
Found at i:6829993 original size:25 final size:27
Alignment explanation
Indices: 6829956--6830011 Score: 64
Period size: 25 Copynumber: 2.1 Consensus size: 27
6829946 TATTATTTAT
*
6829956 ATTCTTTGATATAGGT-TTTTTT-TTC
1 ATTCTTTGATATAGATATTTTTTATTC
*
6829981 ATTCTTT-ACTATATATATTTTTTATTC
1 ATTCTTTGA-TATAGATATTTTTTATTC
6830008 ATTC
1 ATTC
6830012 CACAATCACT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 1 0.04
25 12 0.46
26 6 0.23
27 7 0.27
ACGTcount: A:0.21, C:0.11, G:0.05, T:0.62
Consensus pattern (27 bp):
ATTCTTTGATATAGATATTTTTTATTC
Found at i:6840767 original size:11 final size:9
Alignment explanation
Indices: 6840709--6840772 Score: 53
Period size: 9 Copynumber: 7.1 Consensus size: 9
6840699 AAATGAGAAG
*
6840709 AAAATATGA
1 AAAAAATGA
6840718 AAAAAATGTGCA
1 AAAAAA--TG-A
6840730 AAAAAATG-
1 AAAAAATGA
*
6840738 -AAAAAGGA
1 AAAAAATGA
6840746 AAAAAATGA
1 AAAAAATGA
6840755 AAAAAAT-A
1 AAAAAATGA
*
6840763 AGAAAATGA
1 AAAAAATGA
6840772 A
1 A
6840773 GACTTAAATT
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
7 6 0.13
8 7 0.16
9 21 0.47
10 2 0.04
11 2 0.04
12 7 0.16
ACGTcount: A:0.72, C:0.02, G:0.14, T:0.12
Consensus pattern (9 bp):
AAAAAATGA
Found at i:6841938 original size:21 final size:21
Alignment explanation
Indices: 6841874--6841941 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 21
6841864 TGTTTGAAAC
* *
6841874 TTTGGATGTGAATCTCTAATT
1 TTTGGATGTGAATCTTTAAAT
* *
6841895 TTTCGAATGTGAATTCTTGAAAT
1 TTT-GGATGTGAA-TCTTTAAAT
*
6841918 TTTGGATATGAATCTTTAAAT
1 TTTGGATGTGAATCTTTAAAT
6841939 TTT
1 TTT
6841942 TTGAACAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 14 0.37
22 15 0.39
23 9 0.24
ACGTcount: A:0.28, C:0.07, G:0.16, T:0.49
Consensus pattern (21 bp):
TTTGGATGTGAATCTTTAAAT
Found at i:6842240 original size:17 final size:17
Alignment explanation
Indices: 6842218--6842287 Score: 79
Period size: 17 Copynumber: 4.2 Consensus size: 17
6842208 CTCCCGTGAT
6842218 TCTAAAGTTCTTACGAA
1 TCTAAAGTTCTTACGAA
**
6842235 TCTAAAGTTCTTATAAA
1 TCTAAAGTTCTTACGAA
* * **
6842252 TATAAAATTCTTGGGAA
1 TCTAAAGTTCTTACGAA
6842269 TCTAAA-TTCTTACGAA
1 TCTAAAGTTCTTACGAA
6842285 TCT
1 TCT
6842288 TCCATTCTTC
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
16 11 0.26
17 32 0.74
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (17 bp):
TCTAAAGTTCTTACGAA
Found at i:6842285 original size:50 final size:52
Alignment explanation
Indices: 6842218--6842320 Score: 140
Period size: 50 Copynumber: 2.0 Consensus size: 52
6842208 CTCCCGTGAT
*
6842218 TCTAAAGTTCTTACGAATC-TAAAGTTCTTATAAATAT-AAAATTCTTGGGAA
1 TCTAAAGTTCTTACGAATCTTAAA-TTCTTACAAATATGAAAATTCTTGGGAA
** *
6842269 TCTAAA-TTCTTACGAATCTTCCATTCTTCCAAATATGAAAATTCTTGGGAA
1 TCTAAAGTTCTTACGAATCTTAAATTCTTACAAATATGAAAATTCTTGGGAA
6842320 T
1 T
6842321 TTGGAACCTT
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
50 23 0.50
51 23 0.50
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (52 bp):
TCTAAAGTTCTTACGAATCTTAAATTCTTACAAATATGAAAATTCTTGGGAA
Found at i:6842367 original size:17 final size:16
Alignment explanation
Indices: 6842347--6842404 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 16
6842337 TCTGAAATCT
*
6842347 TTGTGAAACTTGAAAGC
1 TTGTGAAACTTG-AACC
* *
6842364 TTGTGAACCTAGAACC
1 TTGTGAAACTTGAACC
6842380 TCTGTGAAACTTGGAACC
1 T-TGTGAAACTT-GAACC
6842398 TT-TGAAA
1 TTGTGAAA
6842405 ATCTTGAAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
16 9 0.26
17 19 0.56
18 6 0.18
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (16 bp):
TTGTGAAACTTGAACC
Found at i:6842462 original size:18 final size:18
Alignment explanation
Indices: 6842439--6842486 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
6842429 ATTTTTTTTT
* *
6842439 TGAATCTTGGAACCTTTG
1 TGAATCTTGAAACCTTTA
6842457 TGAATCTTGAAACCTTTA
1 TGAATCTTGAAACCTTTA
6842475 TGAATCTTGAAA
1 TGAATCTTGAAA
6842487 TTTTTGACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.38
Consensus pattern (18 bp):
TGAATCTTGAAACCTTTA
Found at i:6843003 original size:15 final size:14
Alignment explanation
Indices: 6842985--6843019 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
6842975 ACAAAAGGTC
*
6842985 AAAAGTAAAAAAAA
1 AAAAATAAAAAAAA
6842999 AAAAATAAAAAAAA
1 AAAAATAAAAAAAA
6843013 AAAAATA
1 AAAAATA
6843020 GGGATTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.03, T:0.09
Consensus pattern (14 bp):
AAAAATAAAAAAAA
Found at i:6843008 original size:13 final size:13
Alignment explanation
Indices: 6842992--6843016 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6842982 GTCAAAAGTA
6842992 AAAAAAAAAAAAT
1 AAAAAAAAAAAAT
6843005 AAAAAAAAAAAA
1 AAAAAAAAAAAA
6843017 ATAGGGATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.96, C:0.00, G:0.00, T:0.04
Consensus pattern (13 bp):
AAAAAAAAAAAAT
Found at i:6843358 original size:22 final size:22
Alignment explanation
Indices: 6843333--6843375 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
6843323 TTATAGGGAA
*
6843333 GTTTTTAGGCTTTTGATCTTTT
1 GTTTTTAGGCTTTTGACCTTTT
* *
6843355 GTTTTTTGGGTTTTGACCTTT
1 GTTTTTAGGCTTTTGACCTTT
6843376 GAAATTTTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.09, G:0.21, T:0.63
Consensus pattern (22 bp):
GTTTTTAGGCTTTTGACCTTTT
Found at i:6843537 original size:24 final size:25
Alignment explanation
Indices: 6843508--6843559 Score: 97
Period size: 24 Copynumber: 2.1 Consensus size: 25
6843498 TTGAGGGTAC
6843508 TTTCTGAAATTTACTAGGTTT-GAT
1 TTTCTGAAATTTACTAGGTTTGGAT
6843532 TTTCTGAAATTTACTAGGTTTGGAT
1 TTTCTGAAATTTACTAGGTTTGGAT
6843557 TTT
1 TTT
6843560 TTTTTTACAG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 21 0.78
25 6 0.22
ACGTcount: A:0.23, C:0.08, G:0.17, T:0.52
Consensus pattern (25 bp):
TTTCTGAAATTTACTAGGTTTGGAT
Found at i:6844015 original size:14 final size:14
Alignment explanation
Indices: 6843987--6844038 Score: 58
Period size: 13 Copynumber: 4.0 Consensus size: 14
6843977 CAGGTTTTTA
*
6843987 TTCTTTTTTTG-TT
1 TTCTTATTTTGATT
6844000 TTCTTATTTTGA--
1 TTCTTATTTTGATT
6844012 TT-TTATTTTGATT
1 TTCTTATTTTGATT
*
6844025 TTATTATTTTGATT
1 TTCTTATTTTGATT
6844039 GTTTTCCCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
11 9 0.26
12 2 0.06
13 12 0.35
14 11 0.32
ACGTcount: A:0.13, C:0.04, G:0.08, T:0.75
Consensus pattern (14 bp):
TTCTTATTTTGATT
Found at i:6844019 original size:11 final size:11
Alignment explanation
Indices: 6844003--6844029 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
6843993 TTTTGTTTTC
6844003 TTATTTTGATT
1 TTATTTTGATT
6844014 TTATTTTGATT
1 TTATTTTGATT
6844025 TTATT
1 TTATT
6844030 ATTTTGATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.00, G:0.07, T:0.74
Consensus pattern (11 bp):
TTATTTTGATT
Found at i:6844156 original size:18 final size:18
Alignment explanation
Indices: 6844122--6844156 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6844112 GATATGTTTG
* *
6844122 TATATTTATTTGGATGAC
1 TATATTTAATTGCATGAC
6844140 TATATTTAATTGCATGA
1 TATATTTAATTGCATGA
6844157 TTATCAATAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.06, G:0.14, T:0.49
Consensus pattern (18 bp):
TATATTTAATTGCATGAC
Found at i:6844193 original size:42 final size:42
Alignment explanation
Indices: 6844125--6844221 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 42
6844115 ATGTTTGTAT
*
6844125 ATTTATTTG-GATGACTATATTTAATTGCATGATTATCA-ATAC
1 ATTTATTTGTGATGACTATATTCAATTGCATGATTAT-ATAT-C
* *
6844167 ATTTATTTGTG-TGATTATGTTCAATTGCATGATTATATATC
1 ATTTATTTGTGATGACTATATTCAATTGCATGATTATATATC
6844208 ATTTTATTTGTGAT
1 A-TTTATTTGTGAT
6844222 ATTTATTTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
41 3 0.06
42 43 0.90
43 2 0.04
ACGTcount: A:0.29, C:0.07, G:0.13, T:0.51
Consensus pattern (42 bp):
ATTTATTTGTGATGACTATATTCAATTGCATGATTATATATC
Found at i:6850690 original size:15 final size:15
Alignment explanation
Indices: 6850670--6850699 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
6850660 TGTCCACCAT
*
6850670 CCGGAGTATCAGCTG
1 CCGGAGCATCAGCTG
6850685 CCGGAGCATCAGCTG
1 CCGGAGCATCAGCTG
6850700 TCAATTGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.30, G:0.33, T:0.17
Consensus pattern (15 bp):
CCGGAGCATCAGCTG
Found at i:6853474 original size:20 final size:20
Alignment explanation
Indices: 6853449--6853487 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6853439 AAGCCTCATA
6853449 TATTTGACAAAAAAATTTTT
1 TATTTGACAAAAAAATTTTT
* *
6853469 TATTTGATAATAAAATTTT
1 TATTTGACAAAAAAATTTT
6853488 ATCATTGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (20 bp):
TATTTGACAAAAAAATTTTT
Found at i:6859681 original size:15 final size:15
Alignment explanation
Indices: 6859663--6859706 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
6859653 ATTTTCATGA
6859663 AAAAAGAAAATAAAT
1 AAAAAGAAAATAAAT
*
6859678 AAAAATAAAAT-AAT
1 AAAAAGAAAATAAAT
6859692 AAAAAGATAAATAAA
1 AAAAAGA-AAATAAA
6859707 AATTAATGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 9 0.36
15 14 0.56
16 2 0.08
ACGTcount: A:0.80, C:0.00, G:0.05, T:0.16
Consensus pattern (15 bp):
AAAAAGAAAATAAAT
Found at i:6863075 original size:81 final size:84
Alignment explanation
Indices: 6862928--6863145 Score: 311
Period size: 81 Copynumber: 2.6 Consensus size: 84
6862918 ACATTTGAAT
6862928 AGATTCAGCTTGAAAGATTTATGAATCTTGCCTAGAGGATTTTGAGACTATGACTGAAGGTATTA
1 AGATTCAGCTTGAAAGATTTATGAATCTTGCCTAGAGGATTTTGAGACTATGACTGAAGGTATTA
6862993 TAAGTCTT-AACACTT-AA-
66 TAAGT-TTCAACACTTAAAC
* * * *
6863010 A-ATTTAGCTCGAAAGATTTATGAATCTAGCCTAGAGGATTTTGAGACTATGACTGAAGGTCTTA
1 AGATTCAGCTTGAAAGATTTATGAATCTTGCCTAGAGGATTTTGAGACTATGACTGAAGGTATTA
*
6863074 TAAGTTTCAATACTTAAAC
66 TAAGTTTCAACACTTAAAC
** *
6863093 AGATTCAAATTGAAAGATTTATGAATCTTG-CTAGGAGGATTTAGAGACTATGA
1 AGATTCAGCTTGAAAGATTTATGAATCTTGCCTA-GAGGATTTTGAGACTATGA
6863146 TCGAAAGATT
Statistics
Matches: 120, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
80 2 0.02
81 70 0.58
82 3 0.03
83 4 0.03
84 41 0.34
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.33
Consensus pattern (84 bp):
AGATTCAGCTTGAAAGATTTATGAATCTTGCCTAGAGGATTTTGAGACTATGACTGAAGGTATTA
TAAGTTTCAACACTTAAAC
Found at i:6863177 original size:84 final size:84
Alignment explanation
Indices: 6862939--6863208 Score: 243
Period size: 84 Copynumber: 3.2 Consensus size: 84
6862929 GATTCAGCTT
* * * * * * *
6862939 GAAAGATTTATGAATCTTGCCTAGAGGATTTTGAGACTATGACTGAAGGTATTATAAGTCTTAAC
1 GAAAGATTTATGAATCTTG-CTAGAGGATTTAGAGACTATGACTGAAGATCTTACAAATCTCAAT
* ** *
6863004 ACTT-AA-A-ATT-TAGCTC
65 ACTTAAACAGATTCAAATTA
* * * * * *
6863020 GAAAGATTTATGAATCTAGCCTAGAGGATTTTGAGACTATGACTGAAGGTCTTATAAGTTTCAAT
1 GAAAGATTTATGAATCTTG-CTAGAGGATTTAGAGACTATGACTGAAGATCTTACAAATCTCAAT
6863085 ACTTAAACAGATTCAAATT-
65 ACTTAAACAGATTCAAATTA
*
6863104 GAAAGATTTATGAATCTTGCTAGGAGGATTTAGAGACTATGA-TCGAAAGAT-TTACAAATCTCG
1 GAAAGATTTATGAATCTTGCTA-GAGGATTTAGAGACTATGACT-G-AAGATCTTACAAATCTCA
*
6863167 ATA-TTCAAACAGATTCAACTTA
63 ATACTT-AAACAGATTCAAATTA
*
6863189 GAAA-ATTTACGAATCTTGCT
1 GAAAGATTTATGAATCTTGCT
6863209 TGAAAGATTT
Statistics
Matches: 163, Mismatches: 17, Indels: 15
0.84 0.09 0.08
Matches are distributed among these distances:
81 64 0.39
82 2 0.01
83 7 0.04
84 80 0.49
85 10 0.06
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.33
Consensus pattern (84 bp):
GAAAGATTTATGAATCTTGCTAGAGGATTTAGAGACTATGACTGAAGATCTTACAAATCTCAATA
CTTAAACAGATTCAAATTA
Found at i:6863354 original size:80 final size:80
Alignment explanation
Indices: 6863243--6863441 Score: 202
Period size: 80 Copynumber: 2.5 Consensus size: 80
6863233 AGTTTGAGAT
* ** * * * * * * * *
6863243 TTTGCTCAAAGGTCTTAAAAATTATTTAAAAATTTAAGATTTTGCATGAAGGTTTTAGACTTCAC
1 TTTGCTCAAAAGTCTTAGGAATCATTCAAAAATTCAAAATATTGCATAAAGGTCTTAGAATTCAC
*
6863308 TAAAAAATCTAGGGA
66 TAAAAAATCTAAGGA
* * *
6863323 TTTG-TGCAAAAGTCTTGGGAATCATTCAAAAATTCAAAATATTGCCTAAAGGTCTTGGAATTCA
1 TTTGCT-CAAAAGTCTTAGGAATCATTCAAAAATTCAAAATATTGCATAAAGGTCTTAGAATTCA
* * *
6863387 TTTAAAAATCTAAGGT
65 CTAAAAAATCTAAGGA
* *
6863403 TTTGCTCAATAGTTTTAGGAATCATTCAAAAATTCAAAA
1 TTTGCTCAAAAGTCTTAGGAATCATTCAAAAATTCAAAA
6863442 AATAAAAAAT
Statistics
Matches: 96, Mismatches: 21, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
79 1 0.01
80 94 0.98
81 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.35
Consensus pattern (80 bp):
TTTGCTCAAAAGTCTTAGGAATCATTCAAAAATTCAAAATATTGCATAAAGGTCTTAGAATTCAC
TAAAAAATCTAAGGA
Found at i:6865112 original size:26 final size:26
Alignment explanation
Indices: 6865083--6865140 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 26
6865073 CTTTTATTTA
6865083 TTTTGCTTTGTT-TTTTTCTTACCTTTT
1 TTTTGCTTT-TTCTTTTT-TTACCTTTT
*
6865110 TTTTTCTTTTTCTTTTTTTA-CTTTT
1 TTTTGCTTTTTCTTTTTTTACCTTTT
6865135 TTTTGC
1 TTTTGC
6865141 ACATATCCAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 10 0.36
26 5 0.18
27 13 0.46
ACGTcount: A:0.03, C:0.14, G:0.05, T:0.78
Consensus pattern (26 bp):
TTTTGCTTTTTCTTTTTTTACCTTTT
Found at i:6865644 original size:20 final size:21
Alignment explanation
Indices: 6865614--6865667 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
6865604 GTCATAATCA
6865614 TTTCTTATTTTTT-ATTTT-TT
1 TTTCTT-TTTTTTCATTTTCTT
*
6865634 TTTCTCTTTTTTTCCTTTTCTT
1 TTTCT-TTTTTTTCATTTTCTT
6865656 TTTCTTTTTTTT
1 TTTCTTTTTTTT
6865668 TTTATACATA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 11 0.37
21 12 0.40
22 7 0.23
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (21 bp):
TTTCTTTTTTTTCATTTTCTT
Found at i:6865646 original size:22 final size:22
Alignment explanation
Indices: 6865616--6865672 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
6865606 CATAATCATT
* *
6865616 TCTTATTTTTTATTTTTTTTTC
1 TCTTTTTTTTTATTTCTTTTTC
*
6865638 TCTTTTTTTCCT-TTTCTTTTTC
1 TCTTTTTTT-TTATTTCTTTTTC
*
6865660 TTTTTTTTTTTAT
1 TCTTTTTTTTTAT
6865673 ACATACTTCA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
21 1 0.04
22 26 0.93
23 1 0.04
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.82
Consensus pattern (22 bp):
TCTTTTTTTTTATTTCTTTTTC
Found at i:6865668 original size:11 final size:11
Alignment explanation
Indices: 6865628--6865669 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
6865618 TTATTTTTTA
6865628 TTTTTTTTTCT
1 TTTTTTTTTCT
* *
6865639 CTTTTTTTCCT
1 TTTTTTTTTCT
*
6865650 TTTCTTTTTCT
1 TTTTTTTTTCT
6865661 TTTTTTTTT
1 TTTTTTTTT
6865670 TATACATACT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:6866846 original size:33 final size:33
Alignment explanation
Indices: 6866759--6866872 Score: 128
Period size: 33 Copynumber: 3.5 Consensus size: 33
6866749 CTTATTCACA
*
6866759 ATTTAAGCCCAGTTTAGCTAGCAC-CTAGATGAG
1 ATTTAAGCCTAGTTTAGCTAGCACTC-AGATGAG
* * * *
6866792 ATTAAAGCCTAATTTAACTAGCACTCAGATAAG
1 ATTTAAGCCTAGTTTAGCTAGCACTCAGATGAG
*
6866825 ATTTAAGCCTAGTCTAGCTAGCA-TC-GATGAG
1 ATTTAAGCCTAGTTTAGCTAGCACTCAGATGAG
6866856 ATTTAAG-CTCAGTTTAG
1 ATTTAAGCCT-AGTTTAG
6866873 TTGACAACAA
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
30 2 0.03
31 18 0.26
32 2 0.03
33 45 0.66
34 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (33 bp):
ATTTAAGCCTAGTTTAGCTAGCACTCAGATGAG
Found at i:6867445 original size:46 final size:46
Alignment explanation
Indices: 6867388--6867547 Score: 212
Period size: 46 Copynumber: 3.5 Consensus size: 46
6867378 CAAGTTTTCA
* * * *
6867388 TTTAAATTTATTTTTAAAAGTTGTTGAGCATTTACCTAAAGGAGCT
1 TTTAAATTTATTTTCAAAAGTTGTTGAACCTTTACCTAAAAGAGCT
* * * *
6867434 TTTAAAGTTATTTTCCAAAGTTGTTAAACCTTTACATAAAAGAGCT
1 TTTAAATTTATTTTCAAAAGTTGTTGAACCTTTACCTAAAAGAGCT
** * *
6867480 TTTAAATTTATTTTCAAAAGTCATTGAACCTTTACCTAAATGAGTT
1 TTTAAATTTATTTTCAAAAGTTGTTGAACCTTTACCTAAAAGAGCT
6867526 TTTAAATTTATTTTCAAAAGTT
1 TTTAAATTTATTTTCAAAAGTT
6867548 TGTAAAGCTT
Statistics
Matches: 97, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 97 1.00
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.44
Consensus pattern (46 bp):
TTTAAATTTATTTTCAAAAGTTGTTGAACCTTTACCTAAAAGAGCT
Found at i:6868578 original size:274 final size:274
Alignment explanation
Indices: 6868089--6868620 Score: 951
Period size: 274 Copynumber: 1.9 Consensus size: 274
6868079 TTAGGTTAAT
6868089 CCTGATTAAATAAAGTCAAATTTGATCAAAATTAGTCAAATTAGATTGAATTTGGGTCAATTTTT
1 CCTGATTAAATAAAGTCAAATTTGATCAAAATTAGTCAAATTAGATTGAATTTGGGTCAATTTTT
* *
6868154 CAAATTTTGGAACCAAATGGGACTAATAAGGCTTGAAAATGATTTTAAAGCACTAAAAACTTTGA
66 CAAATATTGGAACCAAATGGGACTAATAAGGCTTGAAAATGATTTTAAAGCACTAAAAACATTGA
* * *
6868219 TTGCACTTTGGGAAAGATAAAATTACTAAAAGACCGTTTATGGGTCTTTTTTAATTTGAACTTCT
131 TTGCACTTTGGGAAAGATAAAATTACTAAAAGACCGTTTAGGGGTCTTTTTTAATTTAAACTTCG
6868284 CGAAGTTGAATTTTCATGAAAACTTTCATCACACTAAAATAGTATTTTATAATTTTTGGTGCAAT
196 CGAAGTTGAATTTTCATGAAAACTTTCATCACACTAAAATAGTATTTTATAATTTTTGGTGCAAT
6868349 GCCTTTGGGTCAAA
261 GCCTTTGGGTCAAA
6868363 CCTGATTAAATAAAGTCAAATTTGATCAAAATTAGTCAAATTAGATTGAATTTGGGTCAATTTTT
1 CCTGATTAAATAAAGTCAAATTTGATCAAAATTAGTCAAATTAGATTGAATTTGGGTCAA-TTTT
*
6868428 TCAAA-ATTGGAACCAAATGGGACTAATAGGGCTTGAAAATGATTTTAAAGCACTAAAAACATTG
65 TCAAATATTGGAACCAAATGGGACTAATAAGGCTTGAAAATGATTTTAAAGCACTAAAAACATTG
* *
6868492 ATTGCACTTTGGGAAGGGTAAAATTACTAAAA-AGCCGTTTAGGGGTCTTTTTTAATTTAAACTT
130 ATTGCACTTTGGGAAAGATAAAATTACTAAAAGA-CCGTTTAGGGGTCTTTTTTAATTTAAACTT
*
6868556 CGCGGAGTTGAATTTTCATGAAAACTTTCATCACACTAAAATAGTATTTTATAATTTTTGGTGCA
194 CGCGAAGTTGAATTTTCATGAAAACTTTCATCACACTAAAATAGTATTTTATAATTTTTGGTGCA
6868621 CCATAAACCT
Statistics
Matches: 247, Mismatches: 9, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
273 1 0.00
274 237 0.96
275 9 0.04
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (274 bp):
CCTGATTAAATAAAGTCAAATTTGATCAAAATTAGTCAAATTAGATTGAATTTGGGTCAATTTTT
CAAATATTGGAACCAAATGGGACTAATAAGGCTTGAAAATGATTTTAAAGCACTAAAAACATTGA
TTGCACTTTGGGAAAGATAAAATTACTAAAAGACCGTTTAGGGGTCTTTTTTAATTTAAACTTCG
CGAAGTTGAATTTTCATGAAAACTTTCATCACACTAAAATAGTATTTTATAATTTTTGGTGCAAT
GCCTTTGGGTCAAA
Found at i:6870490 original size:20 final size:20
Alignment explanation
Indices: 6870439--6870492 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
6870429 CATTTCCCAT
**
6870439 AAAATCCTAAACCCCAAAATT
1 AAAAT-CTAAACCCCAAAACC
6870460 AAAAT-TAAACCCCAAAACC
1 AAAATCTAAACCCCAAAACC
*
6870479 AAACTCTAAACCCC
1 AAAATCTAAACCCC
6870493 CTAAATTGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 16 0.55
20 8 0.28
21 5 0.17
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.15
Consensus pattern (20 bp):
AAAATCTAAACCCCAAAACC
Found at i:6870655 original size:19 final size:18
Alignment explanation
Indices: 6870618--6870670 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
6870608 TAACTTAGAG
6870618 CCTAAACC-AACCCAAAC
1 CCTAAACCAAACCCAAAC
*
6870635 CCTAAACCAAACCTGAAAC
1 CCTAAACCAAACC-CAAAC
* *
6870654 CCTAAACTAAACACAAA
1 CCTAAACCAAACCCAAA
6870671 AACTATCTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
17 8 0.27
18 7 0.23
19 15 0.50
ACGTcount: A:0.51, C:0.38, G:0.02, T:0.09
Consensus pattern (18 bp):
CCTAAACCAAACCCAAAC
Found at i:6872292 original size:19 final size:20
Alignment explanation
Indices: 6872268--6872310 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
6872258 CTTTCATAAG
**
6872268 AATAACATTTTAAA-AAATA
1 AATAACATCATAAATAAATA
6872287 AATAACATCATAAATAAATA
1 AATAACATCATAAATAAATA
6872307 AATA
1 AATA
6872311 TAGTATTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (20 bp):
AATAACATCATAAATAAATA
Found at i:6873149 original size:13 final size:14
Alignment explanation
Indices: 6873124--6873157 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
6873114 ATTTTTTAAT
6873124 TCAAAATTAAAAAA
1 TCAAAATTAAAAAA
*
6873138 TCAAAATAAAAAAA
1 TCAAAATTAAAAAA
*
6873152 GCAAAA
1 TCAAAA
6873158 CAACAAAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.74, C:0.09, G:0.03, T:0.15
Consensus pattern (14 bp):
TCAAAATTAAAAAA
Found at i:6874845 original size:16 final size:16
Alignment explanation
Indices: 6874824--6874863 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
6874814 TGAAGTATTT
6874824 AAAAAAATATTTAATA
1 AAAAAAATATTTAATA
*
6874840 AAAAAAA-ATTTTATA
1 AAAAAAATATTTAATA
*
6874855 AATAAAATA
1 AAAAAAATA
6874864 AATAAAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
AAAAAAATATTTAATA
Found at i:6874900 original size:22 final size:20
Alignment explanation
Indices: 6874875--6874916 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
6874865 ATAAAAATAA
*
6874875 AATAATAGAAAGATAAATAAAG
1 AATAAT-GAAAGA-AAAAAAAG
6874897 AATAATGAAAGAAAAAAAAG
1 AATAATGAAAGAAAAAAAAG
6874917 TTGAATCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 6 0.32
22 6 0.32
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (20 bp):
AATAATGAAAGAAAAAAAAG
Found at i:6884553 original size:33 final size:33
Alignment explanation
Indices: 6884497--6884575 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 33
6884487 TTAAGCTTAG
* *
6884497 TTTAGCTAGCACCTAGATGAGATTAAAGCCTAA
1 TTTAACTAGCACCTAGATAAGATTAAAGCCTAA
* *
6884530 TTTAACTAGCA-CTCAGATAAGATTTAAGCCTAG
1 TTTAACTAGCACCT-AGATAAGATTAAAGCCTAA
* *
6884563 TCTAGCTAGCACC
1 TTTAACTAGCACC
6884576 GATGAGATTT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
32 2 0.05
33 35 0.92
34 1 0.03
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (33 bp):
TTTAACTAGCACCTAGATAAGATTAAAGCCTAA
Found at i:6885171 original size:46 final size:46
Alignment explanation
Indices: 6885114--6885273 Score: 212
Period size: 46 Copynumber: 3.5 Consensus size: 46
6885104 CAAGTTTTCA
* * *
6885114 TTTAAATTTATTTTTAAAAGTTGTTGAGCATTTACCTAAAGGAGCT
1 TTTAAATTTATTTTCAAAAGTTGTTGAACCTTTACCTAAAGGAGCT
* * * * * *
6885160 TTTAAAGTTATTTTCCAAAGTTGTTAAACCTTTACATAAAAGATCT
1 TTTAAATTTATTTTCAAAAGTTGTTGAACCTTTACCTAAAGGAGCT
** *
6885206 TTTAAATTTATTTTCAAAAGTCATTGAACCTTTACCTAAAGGAGTT
1 TTTAAATTTATTTTCAAAAGTTGTTGAACCTTTACCTAAAGGAGCT
6885252 TTTAAATTTATTTTCAAAAGTT
1 TTTAAATTTATTTTCAAAAGTT
6885274 TGTAAAGCTT
Statistics
Matches: 95, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 95 1.00
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.44
Consensus pattern (46 bp):
TTTAAATTTATTTTCAAAAGTTGTTGAACCTTTACCTAAAGGAGCT
Found at i:6885362 original size:10 final size:10
Alignment explanation
Indices: 6885347--6885371 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
6885337 AAATAGCAAC
6885347 AAAAAGAAAG
1 AAAAAGAAAG
6885357 AAAAAGAAAG
1 AAAAAGAAAG
6885367 AAAAA
1 AAAAA
6885372 AATTCCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAG
Found at i:6886337 original size:274 final size:273
Alignment explanation
Indices: 6885827--6886357 Score: 931
Period size: 274 Copynumber: 1.9 Consensus size: 273
6885817 TTAGGTTAAT
6885827 CCTGATTAAATAAAGTCAAATTTGATCAAAATTAGTCAAATTAGATTGAATTTGGGTCAATTTTT
1 CCTGATTAAATAAAGTCAAATTTGATCAAAATTAGTCAAATTAGATTGAATTTGGGTCAATTTTT
*
6885892 CAAATTTTGGAACCAAATGGGACTAATAAGGCTTGAAAATGAGTTAAAGCACTAAAAACTTTGAT
66 CAAAATTTGGAACCAAATGGGACTAATAAGGCTTGAAAATGAGTTAAAGCACTAAAAACTTTGAT
* *
6885957 TGCACTTTGGGAAAGATAAAATTACTAGAAGACCGTTTAGGGGTCTTTTTTAATTTGAACTTCTC
131 TGCACTTTGGGAAAGATAAAATTACTAAAAGACCGTTTAGGGGTCTTTTTTAATTTAAACTTCTC
*
6886022 GAAGTTGGATTTTCATGAAAACTTTCATCACACTAAAATAGTATTTTATAATTTTTGGTGCAATG
196 GAAGTTGAATTTTCATGAAAACTTTCATCACACTAAAATAGTATTTTATAATTTTTGGTGCAATG
6886087 CCTTTGGGTCAAA
261 CCTTTGGGTCAAA
6886100 CCTGATTAAATAAAGTCAAATTTGATCAAAATTAGTCAAATTAGATTGAATTTGGGTCAATTTTT
1 CCTGATTAAATAAAGTCAAATTTGATCAAAATTAGTCAAATTAGATTGAATTTGGGTCAATTTTT
* * *
6886165 CAAAATTTGGAATCAAATGGGACTAATAGGGCTTGAAAATGATTTTAAAGCACTAAAAACTTTGA
66 CAAAATTTGGAACCAAATGGGACTAATAAGGCTTGAAAATGA-GTTAAAGCACTAAAAACTTTGA
* *
6886230 TTGCACTTTGGGAAGGGTAAAATTACTAAAA-AGCCGTTTAGGGGTCTTTTTTAATTTAAACTTC
130 TTGCACTTTGGGAAAGATAAAATTACTAAAAGA-CCGTTTAGGGGTCTTTTTTAATTTAAACTTC
*
6886294 GT-GGAGTTGAATTTTCATGAAAACTTTCATCACACTAAAATAGTATTTTATAATTTTTGGTGCA
194 -TCGAAGTTGAATTTTCATGAAAACTTTCATCACACTAAAATAGTATTTTATAATTTTTGGTGCA
6886358 CTATAAACCT
Statistics
Matches: 245, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
273 105 0.43
274 139 0.57
275 1 0.00
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.36
Consensus pattern (273 bp):
CCTGATTAAATAAAGTCAAATTTGATCAAAATTAGTCAAATTAGATTGAATTTGGGTCAATTTTT
CAAAATTTGGAACCAAATGGGACTAATAAGGCTTGAAAATGAGTTAAAGCACTAAAAACTTTGAT
TGCACTTTGGGAAAGATAAAATTACTAAAAGACCGTTTAGGGGTCTTTTTTAATTTAAACTTCTC
GAAGTTGAATTTTCATGAAAACTTTCATCACACTAAAATAGTATTTTATAATTTTTGGTGCAATG
CCTTTGGGTCAAA
Found at i:6888224 original size:20 final size:20
Alignment explanation
Indices: 6888173--6888226 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
6888163 CATTTCCCAT
**
6888173 AAAATCCTAAACCCCAAAATT
1 AAAAT-CTAAACCCCAAAACC
6888194 AAAAT-TAAACCCCAAAACC
1 AAAATCTAAACCCCAAAACC
*
6888213 AAACTCTAAACCCC
1 AAAATCTAAACCCC
6888227 CTAAATTGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 16 0.55
20 8 0.28
21 5 0.17
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.15
Consensus pattern (20 bp):
AAAATCTAAACCCCAAAACC
Found at i:6888307 original size:18 final size:18
Alignment explanation
Indices: 6888286--6888330 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
6888276 AACCTATACC
*
6888286 CTAAATTAACCCTAAACT
1 CTAAACTAACCCTAAACT
6888304 CTAAACTAACCCTAAACT
1 CTAAACTAACCCTAAACT
6888322 CTAAACTAA
1 CTAAACTAA
6888331 ATCATAAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.47, C:0.29, G:0.00, T:0.24
Consensus pattern (18 bp):
CTAAACTAACCCTAAACT
Found at i:6888407 original size:19 final size:18
Alignment explanation
Indices: 6888370--6888422 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 18
6888360 TAACTTAGAG
6888370 CCTAAACC-AACCCAAAC
1 CCTAAACCAAACCCAAAC
*
6888387 CCTAAACCAAACCTGAAAC
1 CCTAAACCAAACC-CAAAC
* *
6888406 CCTAAACTAAACACAAA
1 CCTAAACCAAACCCAAA
6888423 AACTATCTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
17 8 0.27
18 7 0.23
19 15 0.50
ACGTcount: A:0.51, C:0.38, G:0.02, T:0.09
Consensus pattern (18 bp):
CCTAAACCAAACCCAAAC
Found at i:6889523 original size:115 final size:115
Alignment explanation
Indices: 6889399--6889612 Score: 279
Period size: 115 Copynumber: 1.9 Consensus size: 115
6889389 ATCCATTACA
* * *
6889399 TGATCGATCCCTTATGTAGGGGGATCGATCTCTTTTTT-GGATTTTCAAACGA-TAGAGCATTCT
1 TGATCGATCCCTTATGTAGGGGGATCGATCTCTTTTTTAGAATTTT-AAACGAGAAAAGCATTCT
* **
6889462 GTTTGAGCAACTGATCAATCCCTTTAAGAAAGAGATCGATCCCATGCCTAGG
65 GTAT-AAAAACTGATCAATCCCTTTAAGAAAGAGATCGATCCCATGCCTAGG
* * * * *
6889514 TGATTGATCCCTTATGTGGGGGGATCGATCTTTTTTTTAGAATTTTGAGCGAGAAAAGCATTCTG
1 TGATCGATCCCTTATGTAGGGGGATCGATCTCTTTTTTAGAATTTTAAACGAGAAAAGCATTCTG
* *
6889579 TATAAAAAGTGATCAATCCCTTTAAGGAAGAGAT
66 TATAAAAACTGATCAATCCCTTTAAGAAAGAGAT
6889613 TGATTGGGTA
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
115 66 0.79
116 18 0.21
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.33
Consensus pattern (115 bp):
TGATCGATCCCTTATGTAGGGGGATCGATCTCTTTTTTAGAATTTTAAACGAGAAAAGCATTCTG
TATAAAAACTGATCAATCCCTTTAAGAAAGAGATCGATCCCATGCCTAGG
Found at i:6890048 original size:20 final size:22
Alignment explanation
Indices: 6890010--6890055 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 22
6890000 ATAAGCTTTC
**
6890010 ATAAGAATAACATTTTAAA-AA
1 ATAAGAATAACATCATAAATAA
6890031 ATAAG-ATAACATCATAAATAA
1 ATAAGAATAACATCATAAATAA
6890052 ATAA
1 ATAA
6890056 ATATAGTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.63, C:0.07, G:0.04, T:0.26
Consensus pattern (22 bp):
ATAAGAATAACATCATAAATAA
Found at i:6892574 original size:16 final size:15
Alignment explanation
Indices: 6892552--6892592 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
6892542 ATGAAGTATT
6892552 TAAAAAAATATTTAA
1 TAAAAAAATATTTAA
* *
6892567 TAAAAAAATTTTTTA
1 TAAAAAAATATTTAA
6892582 TAAATAAAATA
1 TAAA-AAAATA
6892593 AATAAAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAAAAAATATTTAA
Found at i:6892629 original size:22 final size:20
Alignment explanation
Indices: 6892604--6892645 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
6892594 ATAAAAATAA
*
6892604 AATAATAGAAAGATAAATAAAG
1 AATAAT-GAAAGA-AAAAAAAG
6892626 AATAATGAAAGAAAAAAAAG
1 AATAATGAAAGAAAAAAAAG
6892646 TTGAATCGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 6 0.32
22 6 0.32
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (20 bp):
AATAATGAAAGAAAAAAAAG
Found at i:6894024 original size:14 final size:13
Alignment explanation
Indices: 6893979--6894011 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
6893969 AATTAAGGAT
6893979 AATT-AAAT-AAA
1 AATTAAAATAAAA
6893990 AATTAAAATAAAA
1 AATTAAAATAAAA
6894003 AATTAAAAT
1 AATTAAAAT
6894012 TGATAAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 4 0.20
12 4 0.20
13 12 0.60
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (13 bp):
AATTAAAATAAAA
Found at i:6894345 original size:18 final size:18
Alignment explanation
Indices: 6894322--6894358 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
6894312 CCTTCTGGTT
6894322 AGCCATACGAATGGATCC
1 AGCCATACGAATGGATCC
6894340 AGCCATACGAATGGATCC
1 AGCCATACGAATGGATCC
6894358 A
1 A
6894359 ACACCAAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.27, G:0.22, T:0.16
Consensus pattern (18 bp):
AGCCATACGAATGGATCC
Found at i:6901520 original size:10 final size:10
Alignment explanation
Indices: 6901505--6901584 Score: 53
Period size: 10 Copynumber: 8.1 Consensus size: 10
6901495 GGATCAATAG
6901505 AAAAA-GAAA
1 AAAAATGAAA
6901514 TAAAAA-GAAGA
1 -AAAAATGAA-A
6901525 AAAAATGAAA
1 AAAAATGAAA
6901535 AAAAATG-AA
1 AAAAATGAAA
** **
6901544 AAAGTTG-TG
1 AAAAATGAAA
6901553 AAAAATGAAAA
1 AAAAATG-AAA
6901564 AAAAATGAAA
1 AAAAATGAAA
6901574 GAAAAA-GAAA
1 -AAAAATGAAA
6901584 A
1 A
6901585 CTCAAATTGA
Statistics
Matches: 57, Mismatches: 8, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
9 13 0.23
10 28 0.49
11 16 0.28
ACGTcount: A:0.75, C:0.00, G:0.15, T:0.10
Consensus pattern (10 bp):
AAAAATGAAA
Found at i:6904404 original size:11 final size:11
Alignment explanation
Indices: 6904388--6904428 Score: 73
Period size: 11 Copynumber: 3.7 Consensus size: 11
6904378 AAGTCTATAA
6904388 GAGATTTGTTT
1 GAGATTTGTTT
*
6904399 GAGATTTGTTA
1 GAGATTTGTTT
6904410 GAGATTTGTTT
1 GAGATTTGTTT
6904421 GAGATTTG
1 GAGATTTG
6904429 CCAGATATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:6904415 original size:22 final size:22
Alignment explanation
Indices: 6904387--6904428 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
6904377 AAAGTCTATA
6904387 AGAGATTTGTTTGAGATTTGTT
1 AGAGATTTGTTTGAGATTTGTT
6904409 AGAGATTTGTTTGAGATTTG
1 AGAGATTTGTTTGAGATTTG
6904429 CCAGATATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.48
Consensus pattern (22 bp):
AGAGATTTGTTTGAGATTTGTT
Found at i:6904526 original size:52 final size:51
Alignment explanation
Indices: 6904465--6904610 Score: 159
Period size: 52 Copynumber: 2.8 Consensus size: 51
6904455 ACTTGTAAAA
*
6904465 AAAAGATTCTAAGATAAAGAGGATTCTTAATAAGTAAGTTTGACTTACAAGAG
1 AAAA-ATTCTAAGA-AAAGAGGATTCTTAATAAGCAAGTTTGACTTACAAGAG
* * *
6904518 AAAAATTCTAAAAGGAAAG-GGATTCTTAATAGGCAAGTTTGACTTACAGGAG
1 AAAAATTCT--AAGAAAAGAGGATTCTTAATAAGCAAGTTTGACTTACAAGAG
* ** **
6904570 AAGAATTCTAAGAGGAGAGGGATTCTTAATGGGCAAGTTTG
1 AAAAATTCTAAGAAAAGA-GGATTCTTAATAAGCAAGTTTG
6904611 TATGGTTATA
Statistics
Matches: 80, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
50 5 0.06
52 64 0.80
53 8 0.10
54 3 0.04
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.27
Consensus pattern (51 bp):
AAAAATTCTAAGAAAAGAGGATTCTTAATAAGCAAGTTTGACTTACAAGAG
Found at i:6917839 original size:46 final size:47
Alignment explanation
Indices: 6917751--6917839 Score: 126
Period size: 46 Copynumber: 1.9 Consensus size: 47
6917741 AAATATTCAA
* **
6917751 TGGAGTTATTGAAGGCGTTTTTGGCCAAAAATGCCTTGAATAAATCT
1 TGGAGTTATTGAAGGCATTTTTGGCCAAAAACACCTTGAATAAATCT
* *
6917798 TGGA-TTATTGAAGGCATTTTTGGCTAAAAACACCTTTAATAA
1 TGGAGTTATTGAAGGCATTTTTGGCCAAAAACACCTTGAATAA
6917840 TCTCTTCCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
46 33 0.89
47 4 0.11
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (47 bp):
TGGAGTTATTGAAGGCATTTTTGGCCAAAAACACCTTGAATAAATCT
Found at i:6918466 original size:299 final size:293
Alignment explanation
Indices: 6917930--6918469 Score: 728
Period size: 299 Copynumber: 1.8 Consensus size: 293
6917920 TCCCCACCCC
*
6917930 TTTTTTGGGATCATTCAAGGCATTTTTATGATTAAACACCTTGAATAATCCCTTTCAAGCATTTA
1 TTTTTTGGGATCATTCAAGGCATTTTTATGATAAAACACCTTGAATAATCCCTTTCAAGCATTTA
* * * * *
6917995 AGATGAGATTAATGAAGGTATTTTTGCACAAAAAATGCTTTGAACTATTCTTAACAAAATATTCA
66 AGAGGAGATTAATGAAGGTATTTTTACACAAAAAAAGCCTTGAACTATCCTTAACAAAATATTCA
* *
6918060 ATGAGGTTATTGAAGGCATTTATAGGCAAAAATACCTTGAACAAATCCTGGATTATTGAAGGCAT
131 ATGAGGTTATTGAAGGCATTTATAGCCAAAAATACCTTGAACAAATCCTAGATTATTGAAGGCAT
* * * * *
6918125 TTTTGGCTAAAAATGCCTTTAATAATCCTTTTCAATTTTTTAGAGGAAAATATTTGAGGCGTGTT
196 TTTTGACTAAAAACGCCTTTAACAATCCCTTTCAAATTTTTAGAGGAAAATATTTGAGGCGTGTT
6918190 CTACCAAAAACATCTTCAATAATCGCTTCTTAT
261 CTACCAAAAACATCTTCAATAATCGCTTCTTAT
* ** *
6918223 TTTTTTGGGATCATTCAAGGCATTTTTGTGATAAAATGCCTTGAATAAGAATAATTCCTTTCAAG
1 TTTTTTGGGATCATTCAAGGCATTTTTATGATAAAACACC-T---T--GAATAATCCCTTTCAAG
* * *
6918288 CATTTATA-AGGAGATTATTGAAGGTGTTTTTACCCAAAAAAAGCCTTGAA-TAATCCTTAACAA
60 CATTTA-AGAGGAGATTAATGAAGGTATTTTTACACAAAAAAAGCCTTGAACT-ATCCTTAACAA
* * * * * *
6918351 AATATTTAATGGGGTTATTGAAGGCATTTCTAGCCAAAAATGCCTTGAATAATTCCTAGATTATT
123 AATATTCAATGAGGTTATTGAAGGCATTTATAGCCAAAAATACCTTGAACAAATCCTAGATTATT
6918416 GAAGGCATTTTTGACTAAAAACG-CTTTCAACAATCCCCTTT-AAATTTTTAGAGG
188 GAAGGCATTTTTGACTAAAAACGCCTTT-AACAAT-CCCTTTCAAATTTTTAGAGG
6918470 GGTTTAATCA
Statistics
Matches: 211, Mismatches: 26, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
293 36 0.17
294 1 0.00
297 1 0.00
298 5 0.02
299 162 0.77
300 6 0.03
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.36
Consensus pattern (293 bp):
TTTTTTGGGATCATTCAAGGCATTTTTATGATAAAACACCTTGAATAATCCCTTTCAAGCATTTA
AGAGGAGATTAATGAAGGTATTTTTACACAAAAAAAGCCTTGAACTATCCTTAACAAAATATTCA
ATGAGGTTATTGAAGGCATTTATAGCCAAAAATACCTTGAACAAATCCTAGATTATTGAAGGCAT
TTTTGACTAAAAACGCCTTTAACAATCCCTTTCAAATTTTTAGAGGAAAATATTTGAGGCGTGTT
CTACCAAAAACATCTTCAATAATCGCTTCTTAT
Found at i:6918498 original size:299 final size:295
Alignment explanation
Indices: 6917930--6918566 Score: 695
Period size: 299 Copynumber: 2.2 Consensus size: 295
6917920 TCCCCACCCC
* * **
6917930 TTTTTTGGGATCATTCAAGGCATTTTTATGATTAAACACC-T---T-GAATAATCCCTTTCAAGC
1 TTTTTTGGGATCATTCAAGGCATTTTTGTGATAAAATGCCTTGAATAGAATAATCCCTTTCAAGC
* * * * *
6917990 ATTTAAGATGAGATTAATGAAGGTATTTTTGCACAAAAAATGCTTTGAACTATTCTTAACAAAAT
66 ATTTAAGAGGAGATTAATGAAGGTATTTTTACACAAAAAAAGCCTTGAACTATCCTTAACAAAAT
* *
6918055 ATTCAATGAGGTTATTGAAGGCATTTATAGGCAAAAATACCTTGAACAAATCCTGGATTATTGAA
131 ATTCAATGAGGTTATTGAAGGCATTTATAGCCAAAAATACCTTGAACAAATCCTAGATTATTGAA
* * * * * * **
6918120 GGCATTTTTGGCTAAAAATGCCTTTAATAATCCTTTTCAATTTTTTAGAGGAAAATATTTGAGGC
196 GGCATTTTTGACTAAAAACGCCTTTAACAATCCCTTTCAAATTTTTAGAGGAAAATAATCAAGGC
* *
6918185 GTGTTCTACCAAAAACA-TCTTCAATAATCGCTTC-TTAT
261 GTGTTCTACCAAAAA-AGCCTTCAAT-AT---TTCGTGAT
*
6918223 TTTTTTGGGATCATTCAAGGCATTTTTGTGATAAAATGCCTTGAATAAGAATAATTCCTTTCAAG
1 TTTTTTGGGATCATTCAAGGCATTTTTGTGATAAAATGCCTTGAAT-AGAATAATCCCTTTCAAG
* * *
6918288 CATTTATA-AGGAGATTATTGAAGGTGTTTTTACCCAAAAAAAGCCTTGAA-TAATCCTTAACAA
65 CATTTA-AGAGGAGATTAATGAAGGTATTTTTACACAAAAAAAGCCTTGAACT-ATCCTTAACAA
* * * * * *
6918351 AATATTTAATGGGGTTATTGAAGGCATTTCTAGCCAAAAATGCCTTGAATAATTCCTAGATTATT
128 AATATTCAATGAGGTTATTGAAGGCATTTATAGCCAAAAATACCTTGAACAAATCCTAGATTATT
****
6918416 GAAGGCATTTTTGACTAAAAACG-CTTTCAACAATCCCCTTT-AAATTTTTAGAGGGGTTTAATC
193 GAAGGCATTTTTGACTAAAAACGCCTTT-AACAAT-CCCTTTCAAATTTTTAGAGGAAAATAATC
* * * *
6918479 AATGTGTTTTCTGCCAAAAAAGCCTTCAATATTTCGTGAT
256 AAGGCGTGTTCTACCAAAAAAGCCTTCAATATTTCGTGAT
* * * *
6918519 TGTTTTT-GGATTATTCAAGGCAATTTTGTCCAAAAAATGCCTTGAATA
1 T-TTTTTGGGATCATTCAAGGCATTTTTGT-GATAAAATGCCTTGAATA
6918567 TTCCCTTACA
Statistics
Matches: 287, Mismatches: 43, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
293 36 0.13
294 1 0.00
295 3 0.01
296 25 0.09
297 21 0.07
298 8 0.03
299 187 0.65
300 6 0.02
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (295 bp):
TTTTTTGGGATCATTCAAGGCATTTTTGTGATAAAATGCCTTGAATAGAATAATCCCTTTCAAGC
ATTTAAGAGGAGATTAATGAAGGTATTTTTACACAAAAAAAGCCTTGAACTATCCTTAACAAAAT
ATTCAATGAGGTTATTGAAGGCATTTATAGCCAAAAATACCTTGAACAAATCCTAGATTATTGAA
GGCATTTTTGACTAAAAACGCCTTTAACAATCCCTTTCAAATTTTTAGAGGAAAATAATCAAGGC
GTGTTCTACCAAAAAAGCCTTCAATATTTCGTGAT
Found at i:6922424 original size:62 final size:62
Alignment explanation
Indices: 6922327--6922446 Score: 154
Period size: 62 Copynumber: 1.9 Consensus size: 62
6922317 GCATTTCTGG
* * *
6922327 TTGAATAATCCTTTTAAATTTTTATGAGTGGATTATTGAAGGTGTTGTTGACCAAAAACAAC
1 TTGAATAATCCTTATAAATTTTTATGAGTGGATTATTAAACGTGTTGTTGACCAAAAACAAC
* * *
6922389 TTGAATAATCCCTTATAATTTTTTA-GA-TGGGATTATTAAACGTGTTTTTGGCCAAAAA
1 TTGAATAAT-CCTTATAAATTTTTATGAGT-GGATTATTAAACGTGTTGTTGACCAAAAA
6922447 AGCCTTCAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
61 1 0.02
62 36 0.72
63 13 0.26
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (62 bp):
TTGAATAATCCTTATAAATTTTTATGAGTGGATTATTAAACGTGTTGTTGACCAAAAACAAC
Found at i:6922458 original size:62 final size:63
Alignment explanation
Indices: 6922330--6922460 Score: 144
Period size: 62 Copynumber: 2.1 Consensus size: 63
6922320 TTTCTGGTTG
* * * *
6922330 AATAAT-CCTTTTAAATTTTTATGAGTGGATTATTGAAGGTGTTGTTGACCAAAAACAACTTG
1 AATAATCCCTTATAAATTTTTATGAGTGGATTATTAAACGTGTTGTTGACCAAAAACAACTTC
* * * *
6922392 AATAATCCCTTATAATTTTTTA-GA-TGGGATTATTAAACGTGTTTTTGGCCAAAAA-AGCCTTC
1 AATAATCCCTTATAAATTTTTATGAGT-GGATTATTAAACGTGTTGTTGACCAAAAACA-ACTTC
6922454 AATAATC
1 AATAATC
6922461 TCTTCCCAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
61 2 0.03
62 43 0.74
63 13 0.22
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.38
Consensus pattern (63 bp):
AATAATCCCTTATAAATTTTTATGAGTGGATTATTAAACGTGTTGTTGACCAAAAACAACTTC
Found at i:6922650 original size:124 final size:125
Alignment explanation
Indices: 6922516--6922754 Score: 329
Period size: 125 Copynumber: 1.9 Consensus size: 125
6922506 ACACCTTGAC
* * * *
6922516 TAATCGCTTAGAAAAAATTGAAT-GGGTTAGTCAAGGCGTTTATGGCAAAAAATGCCTCCAATAA
1 TAATCCCTTAGAAAAAATTAAATGGGGTTAGTCAAGGCGTTTATGACAAAAAATGCATCCAATAA
* *
6922580 TCCCCTTCAATTTTTATGATTGGATTATTGAAA-GTGTTTTTAGCTAAAAAATGCCTTGCA
66 TCCCCTTCAATTTTTATGATGGGATTATT-AAAGGTGTTTATAGCTAAAAAATGCCTTGCA
* * **
6922640 TAATCCCTTAGAAAAAATTAAATGGGGTTAGTTAAGGTGTTTATGACAAAAAATGCATTGAATAA
1 TAATCCCTTAGAAAAAATTAAATGGGGTTAGTCAAGGCGTTTATGACAAAAAATGCATCCAATAA
* * * *
6922705 TCTCCTTCATTTTTTATGATGGGCTTATTAAAGGTGTTTATAGTTAAAAA
66 TCCCCTTCAATTTTTATGATGGGATTATTAAAGGTGTTTATAGCTAAAAA
6922755 CACTTTGAAT
Statistics
Matches: 99, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
124 24 0.24
125 75 0.76
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.36
Consensus pattern (125 bp):
TAATCCCTTAGAAAAAATTAAATGGGGTTAGTCAAGGCGTTTATGACAAAAAATGCATCCAATAA
TCCCCTTCAATTTTTATGATGGGATTATTAAAGGTGTTTATAGCTAAAAAATGCCTTGCA
Found at i:6924188 original size:105 final size:104
Alignment explanation
Indices: 6923998--6924207 Score: 253
Period size: 105 Copynumber: 2.0 Consensus size: 104
6923988 TTTTTCTTTC
* * * * * *
6923998 TCAAAAGAGGAAGTTGACTTTTTTGTCGATTCTTAAAATAAGCCTATCCTAATCCTCAATCTTAC
1 TCAAAAGAGGAACTTGACTTTTTTGCCAATTCATAAAATAAGCCTATCCCAAACCTCAATCTTAC
* *
6924063 CCACTTACCTCCAACATGTTATTTAGACTAAAAGGAAAT
66 CCACCTACCTCCAACATGTTATTTAGACCAAAAGGAAAT
*
6924102 TCAAAAG-GGAAACTTGACTTTTTTTGCCAATTCATAAGATAAG-CTCATCCCAAACCTCAATCT
1 TCAAAAGAGG-AACTTGAC-TTTTTTGCCAATTCATAAAATAAGCCT-ATCCCAAACCTCAATCT
* *** *
6924165 TACCCACCTACTTCCAGTGTGTTATTTATACCAAAAGGAAAT
63 TACCCACCTACCTCCAACATGTTATTTAGACCAAAAGGAAAT
6924207 T
1 T
6924208 TTATACATAA
Statistics
Matches: 89, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
103 2 0.02
104 16 0.18
105 71 0.80
ACGTcount: A:0.34, C:0.22, G:0.11, T:0.32
Consensus pattern (104 bp):
TCAAAAGAGGAACTTGACTTTTTTGCCAATTCATAAAATAAGCCTATCCCAAACCTCAATCTTAC
CCACCTACCTCCAACATGTTATTTAGACCAAAAGGAAAT
Done.