Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 5 of 129
Found at i:919852 original size:156 final size:158
Alignment explanation
Indices: 919568--919934 Score: 508
Period size: 156 Copynumber: 2.3 Consensus size: 158
919558 CATCAGTTGG
* *
919568 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TAGACCAGACCGAGGGTTATGGCAGTAGGA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTACGGCAGTAGGA
** *
919632 TCGGCAGCATGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCAGCCCACCCCTCTGGCCGGCT
65 TCGGCAGCACACAGAGGGGGACCCGGCCGATCCTCGGCATGCGCAGCCCACCCCTCTGGCCGGCT
* * *
919697 GAGCGCCTGCACGCTCCTTTCGT-GG-GA
130 GAGCGCCCGCACGCTCATTTCATGGGTGA
* **
919724 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCCGACCGAGGGTTACGGTGGTAGGAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGTAGGAT
* * * *
919789 CGGTAGCACATAGAGGGGGACCCGGCCGATCC-CTGGCATGCGCATCCCGCCCCTCTGGCCGGCT
66 CGGCAGCACACAGAGGGGGACCCGGCCGATCCTC-GGCATGCGCAGCCCACCCCTCTGGCCGGCT
919853 GAGCGCCCGCACGCTCATTTCATGGGTTGA
130 GAGCGCCCGCACGCTCATTTCATGGG-TGA
* * * *
919883 GTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTT
919935 GCAATCGCAC
Statistics
Matches: 186, Mismatches: 20, Indels: 7
0.87 0.09 0.03
Matches are distributed among these distances:
155 1 0.01
156 133 0.72
157 3 0.02
159 49 0.26
ACGTcount: A:0.20, C:0.29, G:0.31, T:0.20
Consensus pattern (158 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGTAGGAT
CGGCAGCACACAGAGGGGGACCCGGCCGATCCTCGGCATGCGCAGCCCACCCCTCTGGCCGGCTG
AGCGCCCGCACGCTCATTTCATGGGTGA
Found at i:920807 original size:26 final size:26
Alignment explanation
Indices: 920770--920822 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
920760 GTTGACTTAG
* * *
920770 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
920796 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
920822 G
1 G
920823 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:922308 original size:894 final size:895
Alignment explanation
Indices: 919888--922452 Score: 3783
Period size: 908 Copynumber: 2.9 Consensus size: 895
919878 GTTGAGTTAG
* * ** *
919888 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCAATCGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCACATGCTGGG
* * * * *
919953 CTCAGGCATGTGCTGGTATCACATTTTTCTTTGTCAGGGCACCATCGCCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
920018 ACCTAACCG-ACGACATTGGGGTTCCGGCAATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATG
131 ACCTGACCGCA-GACATTGGGGTTCCGGCGATC-GGGGGGCCG-GGGGGGTGTGCGCACATGATG
* *
920082 TGCGAA-GGGTGCTGGTACTTGGCCCTTATATT-GACCCCTATCCCTCATCAAACCTTGAGAACT
193 TGC-AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
920145 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTAA
* *
920210 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * ** *
920275 TTGTGCATGCCAACAAAAATACAAGGATCACGTGTACGAAGTTTGGGGCCAAAACTCCAACCAAA
386 TTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** * *
920340 AAAATTTTAAAAAGTCCCGAACCGCAAAAAGTTTCAAAAATCGTGCAAAATAGAAAACAAGTCGT
450 AAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
*
920405 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
920470 GCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTT
579 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
920535 GCGCATCCAGTCTCTCTGGTCGGCATAGTGCCCGCCCGCCCGCCCATTCGCCTGCTTGTTTCATC
644 GCGCATCCAGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCG-CC---CGCC--CTCGTTTGATC
* * * * *
920600 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCGAAGATCGGACCAAACTGAGGGTTGTGGCAG
703 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG
* *** * * *
920665 CAAGATCAGCAGCATGCAGAGGGGGACCTGGCCGATCCCCTGCTTGCGCATCCCGCCCCTCTGGC
768 CAAGATCAGCAGCACGCAGAGGGGGACCCAACCGATCCCCAGCTTACACATCCCG---CTCTGGC
* * *
920730 CGACTTAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTA
830 CGACTAAGCGCCCGCACGCTCGTTTCGTGAGATGACTTAGGCATACGGAGTTCATTCCCAGTCTA
920795 A
895 A
* * *
920796 GCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCACATGCTGGG
* * * *
920861 CTCGGGTATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
920926 ACCTGACCGGC-GACATTGGGGTTCCGGCGATCGGGTGGGCCGGGAGGGGTGTGCGCACATGATG
131 ACCTGACC-GCAGACATTGGGGTTCCGGCGATCGGG-GGGCCGGG-GGGGTGTGCGCACATGATG
** * *
920990 TGTGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGACAACTC
193 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
921055 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCATAGCCATTAAAGTGTCTGAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATAGCCATTAAAGTGTCTAAAA
921120 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
921185 GTGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
388 GTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
921250 AATTTTAAAAAATCCCATACCGCACAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCT
452 AATTTTAAAAAATCCGA-ACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
921315 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
921380 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAGCTACGGCTTGC
581 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * ** * * *
921445 GTATCCTGCCTCTCTGACCGACGTAGTGCCCGCTCGCCCGCCCGCCACTCGTTTGATTGGTTGGC
646 GCATCCAGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCC-CTCGTTTGATCGGTTGGC
* * * * * *
921510 TTAGGCATACGAAGTTCATTCCCAATCTAAGATTGGACCAGACCAAGGGTTGCGGTAGCAGGATC
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATC
* * *
921575 -GACAGCACGCAGAGGGGGACCCAACCGATCCCCAGCTTACACATCCTG-TCTGGTCGGCTAAGC
775 AG-CAGCACGCAGAGGGGGACCCAACCGATCCCCAGCTTACACATCCCGCTCTGGCCGACTAAGC
921638 GCCCGCACGCTCGTTTCGTTG-GATGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GCCCGCACGCTCGTTTCG-TGAGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
921695 GCATATGGAGTTCATTCCCAGTCCAAGATCGGACCAGACTGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCACATGCTGGG
* * *
921760 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
921825 ACCTGACCAGCAG-CATTAGGGTTCCGACGATCGGGGGG-C-GGGGGGTGTGCGCACATGATGTG
131 ACCTGACC-GCAGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
921887 CAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
921952 ACCCCCTTAAAGAGCATTTTAGATTTTATAGGTTTGCTGCCATAGCCATGAAAGTGTCTAAAATG
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATAGCCATTAAAGTGTCTAAAATG
* * * *
922017 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTC-AGCTTCTACCTGAATTTTTTTA
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTG
922081 TGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
389 TGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
922146 TTTTAAAAAATCTCGAACCGCAAAAATTTTTGAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATC-CGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
922211 CCATGAAACTTCACGTTAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
922276 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGC-C
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
922340 ATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCG--CTCGTTTCG-TCGGTTGGCTT
648 ATCCAGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCCCTCGTTT-GATCGGTTGGCTT
*
922402 AGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGC
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC
922453 CATGAAACTT
Statistics
Matches: 1500, Mismatches: 143, Indels: 46
0.89 0.08 0.03
Matches are distributed among these distances:
890 63 0.04
891 1 0.00
893 36 0.02
894 236 0.16
895 206 0.14
896 5 0.00
897 1 0.00
898 3 0.00
899 210 0.14
900 3 0.00
902 1 0.00
903 107 0.07
904 4 0.00
907 11 0.01
908 538 0.36
909 75 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGCAGACATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATAGCCATTAAAGTGTCTAAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CAGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCCCTCGTTTGATCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAAGATCAGCAGC
ACGCAGAGGGGGACCCAACCGATCCCCAGCTTACACATCCCGCTCTGGCCGACTAAGCGCCCGCA
CGCTCGTTTCGTGAGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:922825 original size:26 final size:26
Alignment explanation
Indices: 922789--922841 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
922779 TTTGACTTAG
*
922789 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
922815 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
922841 G
1 G
922842 ATTGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:925462 original size:26 final size:26
Alignment explanation
Indices: 925433--925485 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
925423 GTTCACTTAG
*
925433 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
*
925459 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
925485 G
1 G
925486 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:925945 original size:26 final size:25
Alignment explanation
Indices: 925891--925948 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
925881 AGTTTGGGGC
*
925891 CAAAAAT-CCAACCGAAAAATTTTT
1 CAAAAATCCCAACCGAAAAATGTTT
*
925915 AAAAAATCCCGAACCGTAAAAA-GTTT
1 CAAAAATCCC-AACCG-AAAAATGTTT
925941 CAAAAATC
1 CAAAAATC
925949 ATGAAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
24 6 0.21
25 2 0.07
26 15 0.54
27 5 0.18
ACGTcount: A:0.52, C:0.21, G:0.07, T:0.21
Consensus pattern (25 bp):
CAAAAATCCCAACCGAAAAATGTTT
Found at i:925945 original size:27 final size:24
Alignment explanation
Indices: 925892--925946 Score: 65
Period size: 27 Copynumber: 2.2 Consensus size: 24
925882 GTTTGGGGCC
* *
925892 AAAAATCCAACCGAAAAATTTTTA
1 AAAAATCCAACCGAAAAAGTTTCA
925916 AAAAATCCCGAACCGTAAAAAGTTTCA
1 AAAAAT-CC-AACCG-AAAAAGTTTCA
925943 AAAA
1 AAAA
925947 TCATGAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 6 0.23
25 2 0.08
26 5 0.19
27 13 0.50
ACGTcount: A:0.55, C:0.18, G:0.07, T:0.20
Consensus pattern (24 bp):
AAAAATCCAACCGAAAAAGTTTCA
Found at i:926091 original size:894 final size:894
Alignment explanation
Indices: 923687--930243 Score: 8083
Period size: 894 Copynumber: 7.4 Consensus size: 894
923677 GTTGACTTAG
* * *
923687 GCATACGGAGTTCATTTCCAATCTAAGATCGGACTAGACCGATGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-AGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
923752 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCG-CTGGAGCATCGCCGGAG
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTC-GGAGCATCGCCGGAG
* * * *
923816 AACCTGACCGGCGACAATGGGGTTCCAGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
*
923881 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
923946 ACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
924011 GGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
**
924076 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTATTCC-AAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * *
924140 ATTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA-AAAACGAGTCATCTT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
924204 GCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* **
924269 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTTTG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * * **
924334 TATCCCGTCTCTCTGGCCGGCGTAGTGCCC-A--CCCACCTGCTCGCTCGTTTCATCAATTGGCT
648 CATCCCGTCTCTCTGGCC-GCGTAGTGCCCGACGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCT
* * *
924396 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCAGCAGCAGGATCG
** ** * * *
924461 ATAGCACACAGAGGGGGACCCAGTTGATCCCCGACTTGCACATCCCACCCCTCTGGCTGGCTGAG
777 GCAGCACA-A-AGGGGGACCC-GACGATCCCCGGCTTG--CATCCCGCCCCTCTGGCCGGCTGAG
* * * *
924526 CACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
837 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * *
924584 GCATACGAAGTTCATTCCCAGTCTAAGGTTAGACTGGACCGAGGGTTGCCGCATCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-AGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** ** *
924649 GTCAGGCATGTGCTGGTGCCATATTTTTGTTCACTAGGGCACCATCGTCGGAGCATCATCGAAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** * * *
924714 ACCTGACCGGTGACATTGGGGTTCCGACGATCGGGGGGGCCGGGAGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
924779 GATGGGTGCTAGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTT--G--------
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
*
924833 ---------AGAGCATTTGAGATTTTATAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
924888 GGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTTGAGCTTTTACCTGAATTTTTTTAT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * ** *
924953 GCATGCCAACAAATATACAACGATCATGTCTATGAAGTTTGGGGCCAAAACTGCTTCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** * *
925018 TTTTAAAAAAT-CTGAACCCCAAAATGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
925082 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*** * * * *
925147 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCAATCCACGTCTTGTGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
925212 ATCCCGTATCTCTGGCCGCGTAGTGCCCGACTGCCCGCCCACCCACTCGTTTCGTCGGTTGGCTT
649 ATCCCGTCTCTCTGGCCGCGTAGTGCCCGAC-GCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTT
* *
925277 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGAGTGAGGGTTGCAGTAGCAGGATCGG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCAGCAGCAGGATCGG
* * * *
925342 CAGCACAAAGGGGGACCCGACTATCCCTGGCTTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTG
778 CAGCACAAAGGGGGACCCGACGATCCCCGGCTTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * *
925407 CATGCTTGTTTCGTGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAA
843 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
925459 GCATACGGAGTTAATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGACAGCACCTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
925524 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACTATCGTCGGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
925589 ACCTGACCGGCGGCATTGGGGTTCTGGCGATC-GGGGGCCGGGGGGTGTGTGCACATGATGTGTG
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
925653 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
* *
925718 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTGAAATAG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
925782 GGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATATTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * ** *
925847 CATGCCAACAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCAACCGAAAAATT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
*
925912 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
455 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
925977 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*** * * * * *
926042 GGCACATAGAAATATGAAGATGTTCCTGAACCCACCTACCACCCTATCAATCCACGTCTTGTGCA
585 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
926107 TCCCGTCTCTCTGGTCGGCGTAGTGCCCGA---CCGCCCACCCGCTCATTTTGTTGGTTGGCTTA
650 TCCCGTCTCTCTGG-CCGCGTAGTGCCCGACGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
926169 GGCATATGGAGTTCATTCCTAGTCTAAGATTGAACTGGAATGA---TT-CCGACAGCAGGATCGG
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCAG-CAGCAGGATCGG
* * * *
926230 CAGCACACAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCT-GTCGGCTAAGT
778 CAGCACA-A-AGGGGGACCC-GACGATCCCCGGC-T-TGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
926294 GCCCGCACGCTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAG--T--
838 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
926347 -C-TA---AG---ATT----G-----GA-C---CAGGCCGAGGGTTGCGGCAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * ** * *
926391 TCGAGCATGTGCTAGTGCCGTATTTTT-TTCGTCGGGGCACCATCGTCAGAGCATCGCCGGAGAA
66 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* *
926455 CCTGA-CGACGGCATTGGGGTTCCGACGAT-TGGGGGCC-GGGGGTGTGCGCACATGATGTGCGA
131 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
926517 TGGGTGCTGGTAC-TGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
* * * **
926581 CCCTTAAAGAGCATTTGAGATTTTACAGATTTGTTGCTACCAGCCATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
926646 GATAC-TTTTTCAAATGGTCACAAAATCTGGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTTG
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTG
* * * * * *
926710 CATGCCAAAAAAAATACAAGGAGCATGTGTACCATGTTCGGGGCCAAAACTCCTTCCGAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * *
926775 TGTAAAAAATCTCGAACCAT-AAAAGTTTCAAAAATCGTTAAAAATAGAAAATGAGTCGTCTTGC
455 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* ** *
926839 CATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGGATAAAAATGGCTTT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
926904 GGCATGCAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
585 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
926969 TCCCGTCTCTCTGGCCGACGTAGT-------GCCCGTCCTCTCGCTCGTTTCGTCGGTTAGCTTA
650 TCCCGTCTCTCTGGCCG-CGTAGTGCCCGACGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * * *
927027 GGCATTCTGAGTTCATTCCCTGTCTAAGATCGGACTGAACTGA-GGCTGCAGCAGCAGGAT-GAA
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCAGCAGCAGGATCG-G
** ** *
927090 CAGCACATGGAGGGGAGTCGACGA--CCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
778 CAGCACAAAG-GGGGACCCGACGATCCCCGGCTT--GCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
927153 CCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
927208 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGTTTGCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
927273 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGCCAGAGC
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCAT---C---G--TCG---GAGC
* * * * * *
927338 ATCGCCGGAGAACCTGACCG--GTGCATTGAGGTTTCGACGATGGGGGGGCCAGGGGGTGTGCGT
119 ATCGCCGGAGAACCTGACCGACG-GCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGC
* *
927401 ACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
183 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTT
* * *
927466 CAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCAATTAAAG
248 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
927531 TGTCTGAAATGGGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCGAGGTTTTAGCTG
313 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
927596 AATTTTTTTGTGTATGCCAACAAAAATACAAGGATCACGTCTACCAAGCTTGTGGCCAAAACTCC
378 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * ** * * *
927661 TTTCAAAAAAATTTTAAAAAATCTTGAACGGTAAAAAGTTTCAAAATTTGTGAAAAATA-AAAAC
443 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
*
927725 GAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGT-TGGAAATTTACAAGCC
508 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT-G-AATTTACAAGCC
*
927789 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG-CTGAAACCCACCTACCACCCTACCGA
571 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGA
* * * * *
927853 TCCATGGCTTGCGCATCCTGCCTCTCTGGTCGACGTAGTGCCC-ACCTGCCCGCCCGA-CCGCTT
635 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCCCGA-C-GCCCGCCC-ACCCGCTC
* ** * *
927916 GTTTCGTC-GTTGGCTTAGGCATACAGAGTTCATTCTTAGTCTAAGATCGAACCGAACGGAGGGT
696 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGT
** * * * *
927980 TGTGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGGTTGCGGATCCCGCC
761 TGCAGCAGCAGGATCGGCAGCA--CAAAGGGGGACCCGA-CGATCCCCGGCTTGC--ATCCCGCC
* * *
928045 CCTCTAGCCGGCTGAGCGCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
821 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
928110 CTAG--T--
886 CCAGTCTAA
* *
928115 -C-TA---A--T-A-T--C-G-----GAT----CAGACCAAGGGTTGGGGCAGCACATGCTGGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGCGGCAGCACATGCTGGGC
** * * **
928159 TCGGGCATGTGCTGGTGCTGCATTTTTCTTCTCCAGGGCACCATCGTCGGAGCATCATCGGAGAA
66 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * *
928224 CCTGACCGACGGCATTGGGGTTCCGGCAATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCAA
131 CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * *
928289 TGGGTGCTGGTACTTGGCCCTTATATTGG-ACCCTATCCCTCATCAAACCTTGATAACTCACACT
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
* * *
928353 CCTTTAAAGAGCATTTGAGATTTTACAGGTTTTCTTCCAGTAGCCATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
928418 GACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGATTTTTTAGCTGAA-TTTTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * * *
928482 AAGCCAACAAAAATACAAGCATGACGTCTACCAAGTTTTGGGCCAAAACTCCATCCAAAAAAATT
391 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
** * * *
928547 TTAAAAAATCCCGAACCACAAAGAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCC
456 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
928612 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTG
521 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
928677 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATGCACAGCTTGCGCAT
586 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
928742 CCCGTCTCTCTGGCCTGCGTAGTG-CC--CGCCCG----CCCGCTCGTTTCGTCTGTTGGATTAG
651 CCCGTCTCTCTGGCC-GCGTAGTGCCCGACGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
928800 ACATTCGGAGTTCATTCCCTGTCTAAGATC-AGACTGAACTGAGGGTTGCAGCAGCAGGATCGCC
715 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACTGAGGGTTGCAGCAGCAGGATCGGC
* * *
928864 AGCACATGGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCG
779 AGCACA--AAGGGGGACCCGA-CGATCCCCGGCTT--GCATCCCGCCCCTCTGGCCGGCTGAGCG
928929 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
928985 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGCTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
929050 CTCAGGCATGTCCTGGTGCCACATTTTTCTTCGCTGGGGCACCATCATCGAAGCATCATCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
929115 ACCTGACCGACGGCATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGTTGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
929180 AATGGGTGCTGGTACTTAGCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* * *
929245 CCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTACCGGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
929310 GGGACACGTTTTTCAAATGGTCACAAAGTCTTGTACACTTCGAGTTTTTAGGTGACTTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * **
929375 GCATGCAAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCTTAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** * **
929440 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTTATCTTG
454 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
929505 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
929570 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * **
929635 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCATCAATTGGCT
649 ATCCCGTCTCTCTGGCC-GCGTAGTGCCCG-ACGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
929700 TAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCT
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCAGCAGCAGGATCG
* * * * *
929765 GCAGCACGCAGAGGGAGACCCGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCAGCTAAG
777 GCAGCA--CAAAGGGGGACCC-GACGATCCCCGGCTT--GCATCCCGCCCCTCTGGCCGGCTGAG
*
929830 -GACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 CG-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
929888 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** * * * *
929953 CTCGGGCATGTGCTGGTGTCACTTTTTTCTTTGTCGGGGCA-CAGTCACCAGAGCATCGTCGAAC
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCA-TCGTCGGAGCATCGCCGGAG
* * * *
930017 AACCTGACCGACGACATTAGGGTTCTGGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
129 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
930082 GATGGGTGCTGGGACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGTGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* * * *
930147 CCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTACTGCCAGTAGCCACTAAAGTGTCTGAAATA
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
930212 GGGACACTTTTTTCAAATGGTCACAAAATCTT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTT
930244 ATAGTGCCCG
Statistics
Matches: 4908, Mismatches: 579, Indels: 341
0.84 0.10 0.06
Matches are distributed among these distances:
854 1 0.00
855 1 0.00
856 20 0.00
857 57 0.01
858 64 0.01
859 8 0.00
860 17 0.00
861 4 0.00
862 307 0.06
863 144 0.03
864 30 0.01
865 52 0.01
866 211 0.04
868 3 0.00
869 8 0.00
870 2 0.00
871 3 0.00
872 4 0.00
873 253 0.05
874 252 0.05
875 282 0.06
876 180 0.04
877 212 0.04
878 13 0.00
879 4 0.00
880 92 0.02
881 1 0.00
882 2 0.00
883 55 0.01
884 14 0.00
885 66 0.01
886 2 0.00
887 7 0.00
888 20 0.00
889 1 0.00
890 15 0.00
891 76 0.02
892 168 0.03
893 252 0.05
894 327 0.07
895 318 0.06
896 46 0.01
897 209 0.04
898 253 0.05
899 177 0.04
900 1 0.00
902 181 0.04
903 312 0.06
904 1 0.00
905 4 0.00
906 44 0.01
907 36 0.01
908 9 0.00
909 9 0.00
911 78 0.02
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGCGTAGTGCCCGACGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACTGAGGGTTGCAGCAGCAGGATCGGCAG
CACAAAGGGGGACCCGACGATCCCCGGCTTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:927218 original size:26 final size:26
Alignment explanation
Indices: 927182--927234 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
927172 GTTGACTTAG
927182 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
927208 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
927234 G
1 G
927235 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:927331 original size:11 final size:11
Alignment explanation
Indices: 927315--927347 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
927305 GCCAGGGCAC
927315 CATCGCCGGAG
1 CATCGCCGGAG
*
927326 CATCGCCAGAG
1 CATCGCCGGAG
927337 CATCGCCGGAG
1 CATCGCCGGAG
927348 AACCTGACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.21, C:0.36, G:0.33, T:0.09
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:928995 original size:26 final size:26
Alignment explanation
Indices: 928959--929011 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
928949 GTTGACTTAG
928959 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
928985 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
929011 G
1 G
929012 ATCGAACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:929898 original size:26 final size:26
Alignment explanation
Indices: 929862--929914 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
929852 GTTGACTTAG
929862 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
929888 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
929914 G
1 G
929915 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:930468 original size:26 final size:26
Alignment explanation
Indices: 930439--930488 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
930429 GTTGACTTAG
930439 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
930465 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
930489 GAGATCGGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:931365 original size:26 final size:26
Alignment explanation
Indices: 931335--931386 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
931325 TAGACTTAGC
*
931335 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCACTCCCAGTCTAAG
931361 CATACGGAGTTCACTCCCAGTCTAAG
1 CATACGGAGTTCACTCCCAGTCTAAG
931387 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (26 bp):
CATACGGAGTTCACTCCCAGTCTAAG
Found at i:932270 original size:26 final size:26
Alignment explanation
Indices: 932230--932282 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
932220 GTTGACTTAG
*
932230 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
932256 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGATCATTCCCAGTCTAA
932282 G
1 G
932283 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGATCATTCCCAGTCTAA
Found at i:932682 original size:26 final size:26
Alignment explanation
Indices: 932646--932727 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
932636 TGGGTTGACT
932646 TAAGCATACGGAGTTCATTTCCATTC
1 TAAGCATACGGAGTTCATTTCCATTC
932672 TAAGCATACGGAGTTCATTTCCATTC
1 TAAGCATACGGAGTTCATTTCCATTC
** * *
932698 TAAGCATACAAAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTTCCATTC
932724 TAAG
1 TAAG
932728 ATCGGATCGG
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTTCCATTC
Found at i:933599 original size:26 final size:26
Alignment explanation
Indices: 933564--933614 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
933554 TGGGACTTAG
*
933564 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
*
933590 GCATATGGAGTTCATTCACAGTCTA
1 GCATACGGAGTTCATTCACAGTCTA
933615 TGATCAGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:934492 original size:26 final size:26
Alignment explanation
Indices: 934460--934510 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
934450 TGGGACTTAG
*
934460 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
934486 GCATACGGAGTTCATTCACAGTCTA
1 GCATACGGAGTTCATTCACAGTCTA
934511 CGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:935377 original size:900 final size:897
Alignment explanation
Indices: 932675--937745 Score: 6460
Period size: 899 Copynumber: 5.7 Consensus size: 897
932665 TCCATTCTAA
* * ** * * * *
932675 GCATACGGAGTTCATTTCCATTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTACGATCAGA-CGAAC
* * * * **
932740 CGAGGGTTGCAGCAGCACTTGTTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGG
65 CGAAGGTTGCGGCAGCAGTTGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * *
932805 CACCAT---C---G--T--T-GGAGAACCTGACCGACGGCATTGGCGTTCCAGCGATTGGGGGGG
130 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGG
* * *
932859 CCAGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
195 CC-GGGGGTGTGCACACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
932924 CCCTCATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTAC
259 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * * *
932989 CAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTATACACT
324 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACT
* * ** * *
933054 TTGTGTTTCCAGCTGAATTTTTTTGTGCACGCCAA-AAAAATATACAAGGATCACGTCCACCAAG
389 TCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATA-A-AAGGATCACGTCTACCAAG
** * * ** *
933118 TTTGGGGCCAAAACTAATTCTGAAAAAATTTTAAAAAATGTTGAACCGCAAAAAGTTTCAAAAAT
452 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAAT
* * * *
933183 -AGTGAAAAATAGAAAATGAGTCGTCTTGGCATGAAACTTCACATGAAGGCTTAAGAGACCATTG
516 CA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
933247 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCAC
580 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
933312 CGACCGCTCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCCGGCATAGTGCCCGCTCGCC
645 CTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCTCGCC
*
933377 CTCTCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
710 CTCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * ** * *
933442 TCAGACCGAGGGTTGTGGCAACCGGATAAGCAGCACATAGAGGGGGACCTGACCGATCCTCGGCT
775 TCAGACCGAGGGTTGTGGCAGCCAGATCGGTAGCACATAGAGGGGGACCCGACCGATCCTCGGCT
933507 TGCGCATCCCACCCATCTGGCCGGCTGAGCGCCCGCGCGCTCATT-CGTGGGACTTAG
840 TGCGCATCCCACCCATCTGGCCGGCTGAGCGCCCGCGCGCTCATTCCGTGGGACTTAG
* *
933564 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCACAGTCTATGATCAGATC-AGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTACGATCAGA-CGA-A
* * *
933628 CTGAAGGTTGCGGCAGCAGTTGTTGGGCTCGGGCATGTGCTGGTGCTGAATTTTTCTTCGTCGGG
64 CCGAAGGTTGCGGCAGCAGTTGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* *
933693 GCACCATCATCGGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCCGGTGATC-GGGGG
129 GCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGG
933757 GCCGGGGGTGTGCACACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
194 GCCGGGGGTGTGCACACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
933822 CCCTCATCAAATCTTGAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGC
259 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
933887 CAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTAACAAAATGTTGTACACT
324 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACT
* * * * *
933951 TCAAGTTTTTAGTTGATTTTTTTTGTACAAGCCAACAAAAATAAAAGGATCATGTCTACCAAGTT
389 TCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATAAAAGGATCACGTCTACCAAGTT
* * * *
934016 TGGGGCCAAAAATCCTACCGAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCG
454 TGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCA
*
934081 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTCAGGGACCATTGTAT
518 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
934146 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA-CCACCTA
583 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
934210 CCGCCCTATCGATCCACGGCTTACGCATCCCATCTCTCTGGGCGGCGTAGTGCCCGCTCGCCCTC
648 CCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCTC
* * * *
934275 TTGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGATCA
713 TCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCA
* * * *
934340 GACCGAGGTTTGTGGCAGCCAGATCGGCAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGC
778 GACCGAGGGTTGTGGCAGCCAGATCGGTAGCACATAGAGGGGGACCCGACCGATCCTCGGCTTGC
*
934405 GCATCCCACCCATCTGGCCGGAC-GAGTGCCCGCGCGCTCATTCCGTGGGACTTAG
843 GCATCCCACCCATCTGGCCGG-CTGAGCGCCCGCGCGCTCATTCCGTGGGACTTAG
934460 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTACGATCAGACCGAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTACGATCAGA-CGAAC
* * *
934525 CGAAGGTTGTGGCAGGAGTTGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
65 CGAAGGTTGCGGCAGCAGTTGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
*
934590 CACCATCACCGGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGGTTCCGGTGATCGGGGGGG
130 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGG
* * * *
934655 TCGGGAGGTGTGCACAAATGATGTGTGATGGGAGCTGGTACTTGGCCCTTATGTTGGCCCCCTAT
195 CCGGG-GGTGTGCACACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
934720 CCCTCATCAAATCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGC
259 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
934785 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGGAACAAAATGTTGTACACT
324 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACT
* * * * *
934850 TCGAGTTTTTAACTGATTTTTTTTGTACAAGCCAACAAAAATAAAATGATCATGTCTACCAAGTT
389 TCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATAAAAGGATCACGTCTACCAAGTT
* * * **
934915 TGGGGCCAAAACTCCTGCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCA
454 TGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCA
*
934980 CGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
518 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* **
935045 GAATTTACAAGCCATAAAAATAGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
583 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
935110 TCGCCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCTCGCCCTC
648 CCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCTC
* * *
935175 TCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCC
713 TCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCA
* * *
935240 GACCGAGGGTTGTGGCAGCCAGATCGATAGCACATAGAGGGGGACCCGACCGATTCTCAGCTTGC
778 GACCGAGGGTTGTGGCAGCCAGATCGGTAGCACATAGAGGGGGACCCGACCGATCCTCGGCTTGC
*
935305 GCATCCCACCCATCTGGCCGGCTTAGCGCCCGCGCGCTCATTCCGTGGGACTTAG
843 GCATCCCACCCATCTGGCCGGCTGAGCGCCCGCGCGCTCATTCCGTGGGACTTAG
*
935360 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTACGATCAGACTAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTACGATCAGACGA-AC
*
935425 CGAAGGTTGCGGCAGCAGTTGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGG
65 CGAAGGTTGCGGCAGCAGTTGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * *
935490 CACCATCACCGGAGCATCATCGGAGAACCTGACCGACGACATTGGGGTTCTGGTGATCAGGGGGG
130 CACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGG
* * *
935555 CCGGGGGGGTGCACACATGATGTGCGATAGGAGCTGGTACTTGGCCCTTATATTGGCTCCCTATC
195 CCGGGGGTGTGCACACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
935620 CCTCATCAAATCTTGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCC
260 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* ** *
935685 AGTAGCCATTAAAGTGTCTGAAATGGGGAGACTTTTTTCAAATGGTCCCCAAATCTTGTACACTT
325 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTT
* * *
935750 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTGTACCAAGTTT
390 CGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTT
* * *
935815 GTGGCCAAAACTACTTCCG------------AAAA----AA---T------TTT--AAAA-CGTG
455 GGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATG
* *
935852 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCACTGTATGA
520 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** * *
935917 ATTTACAAGCCATAAAAATGGCATTGGCACTTAGAAATATGAAAATGTACCTAAACCCACCTACC
585 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * *
935982 ACCCTATCGATCTATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTG--C-CT-GCCCACCC
650 ACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCTCTC
* * * * * *
936043 ACTCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCAGA
715 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGA
* * **
936108 CCGAGGGTTGCGACAG-CAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCG
780 CCGAGGGTTGTGGCAGCCA-GATCGGTAGCACATAGAGGGGGACCCGACCGATCCTCGGCTTGCG
* * * * ** * *
936172 CATCTCGCTGC-TCTGGCAGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
844 CATCCCAC-CCATCTGGCCGGCTGAGCGCCCGCGCGCTCATTCCGT-GG--GACTTAG
*
936229 GCATACGGAGTTCATTCCTAGTCTAAG-AT-C--AG---A-T--CAG---AC--T-----G-A--
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTACGATCAGACGAACC
** * ** * *
936271 G--GGTTGCGATAGTACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCGTCGGGGC
66 GAAGGTTGCGGCAGCAGTTGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
** * * * ** *
936334 AACC-TCGTCGGAGCATCGTCGGAGAACCTGATCGGCGGCGTTGGGGTTCCGACGATCGGGGGGT
131 -ACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGG
* * * * *
936398 CGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAAC
195 CCGGGGGTGTGCACACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
936463 CCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCT
260 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
936528 AGTAGCCATTAAAGTGTCTGAAATGGGGACAC---TTTCAAATGGTCAAAAAAATGTTGTACACT
325 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT-AACAAAATCTTGTACACT
* * * * * *
936590 TCGAGTTTTTGGGTGAATTTTTTTATGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTT
389 TCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATAAAAGGATCACGTCTACCAAGTT
** * * * * *
936655 TGCTGTCAAAACTCCTTCCAAAAAAATTAAAAAAAATCCTGAACTGTAAAAAGTTTCAAAAATCT
454 TGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCA
* ** * *
936720 TGAAAAATAAAAAATAAGTCATGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
518 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * *
936785 GAATTTATAAGCCATAAAAATGGCATTGCCACTCAAAAATATGAAGATGTGCCTAAACCCACCTA
583 GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
936850 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGC-CTG--C-
648 CCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCTC-GCCCT
* * **
936911 C-CGCCCGCTCATTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATC
712 CTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
* * * **
936975 GGACCGAGGGTTGTGGCAG-CAGGATCGGTAGCACACAAAGGGGGACCCGATTGATCC-CAGGCT
777 AGACCGAGGGTTGTGGCAGCCA-GATCGGTAGCACATAGAGGGGGACCCGACCGATCCTC-GGCT
* * * * * * * * *
937038 TACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCCCACGCTCGTTTCATGTGTTGACTTAG
840 TGCGCATCCCACCCATCTGGCCGGCTGAGCGCCCGCGCGCTC-ATTC-CGTG-GGACTTAG
* * * ** *
937099 GCATTCGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAAATC-GAACCGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTACGATCAG-A-CGAA
* * * * * * **
937163 CCGAGGGTTACGGTAGCA-TATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTAC-TCACCG
64 CCGAAGGTTGCGGCAGCAGT-TGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT-CTTCGTCG
* * *
937226 GGG-ACCATCGCTGGAGCATCGTCGAAGAACC-G---GAC--CA-----G---C-G-GATCGGGG
127 GGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGG
* * * *
937274 GGGCCAGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCGCCC
192 GGGCC-GGGGGTGTGCACACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCC
937339 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
256 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
937404 TGCCGGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
321 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTAC
* * * * *
937469 ACTTCCAATTTTTAGCTGAATGTTTTTGTGCACGCCAACAAAAATAAAAGGATCATGTCTACCAA
386 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATAAAAGGATCACGTCTACCAA
* * * **
937534 CTTTGGGGCCAAAACT-CTTCCGAAAAAATTGAAAAAAATCCCAAACCGTAAAAAGTTTTGAAAA
451 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAA
* ** *
937598 TCGTGAAAAATAGAAAACGAGTTATCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTG
515 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
**
937663 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGAGT-AACCCAC
580 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
937727 CTACCACCC-ATCGATCCAC
645 CTACCACCCTATCGATCCAC
937746 TACTTGTGCA
Statistics
Matches: 3701, Mismatches: 377, Indels: 218
0.86 0.09 0.05
Matches are distributed among these distances:
840 11 0.00
841 88 0.02
843 249 0.07
844 3 0.00
845 1 0.00
847 1 0.00
853 4 0.00
854 1 0.00
856 2 0.00
858 2 0.00
859 3 0.00
861 2 0.00
862 1 0.00
865 4 0.00
866 152 0.04
867 9 0.00
868 3 0.00
869 39 0.01
870 508 0.14
871 10 0.00
872 5 0.00
873 4 0.00
874 3 0.00
877 1 0.00
878 1 0.00
879 22 0.01
880 170 0.05
881 149 0.04
882 83 0.02
883 12 0.00
884 1 0.00
885 1 0.00
887 4 0.00
889 118 0.03
891 3 0.00
892 2 0.00
894 5 0.00
895 244 0.07
896 424 0.11
897 67 0.02
898 311 0.08
899 523 0.14
900 455 0.12
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCACAGTCTACGATCAGACGAACC
GAAGGTTGCGGCAGCAGTTGTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
ACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGC
CGGGGGTGTGCACACATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCTCTCG
CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
CGAGGGTTGTGGCAGCCAGATCGGTAGCACATAGAGGGGGACCCGACCGATCCTCGGCTTGCGCA
TCCCACCCATCTGGCCGGCTGAGCGCCCGCGCGCTCATTCCGTGGGACTTAG
Found at i:935392 original size:26 final size:26
Alignment explanation
Indices: 935360--935410 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
935350 TGGGACTTAG
*
935360 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
935386 GCATACGGAGTTCATTCACAGTCTA
1 GCATACGGAGTTCATTCACAGTCTA
935411 CGATCAGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:936726 original size:870 final size:864
Alignment explanation
Indices: 935844--937745 Score: 2395
Period size: 870 Copynumber: 2.2 Consensus size: 864
935834 AAAAAATTTT
* *
935844 AAAA-CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
935908 ACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTTAGAAATATGAAAATGTACCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTACCTAAAC
* * * *
935973 CCACCTACCACCCTATCGATCTATGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCTGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCC
* * * * *
936038 CACCCACTCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCGGA
196 CACCCACCCGCTCATTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* *
936103 CCAGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCTC-GGC
261 CCAGACCGAGGGTTGCGACAGCAGGATCGGTAGCACACAAAGGGGGACCCGACCGATCC-CAGGC
* * ** * ** *
936167 TTGCGCATCTCGCTGCTCTGGCAGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCA
325 TTACGCATCCCGCCCCTCTGGCAGGCTGAGCACCCCCACGCTCGTTTCATGGGTTGACTTAGGCA
* * * *
936232 TACGGAGTTCATTCCTAG-T-C-T-A-AG-A-T-CAG-ATC-A-GACTGAGGGTTGCGATAGTAC
390 TACGGAGTTCATTCCCAGCTACATAAGAGTATTCCAGAATCAACGACCGAGGGTTACGATAGCAC
**
936286 ATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTT-CTTCGTCGGGGCAACC-TCG-TCGGAGC
455 ATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTAC-TCACCGGGG--ACCATCGCT-GGAGC
* * * * * *
936348 ATCGTCGGAGAACCTGATCGGCGGCGTTGGGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCA
516 ATCGTCGAAGAACCGGA-C--CAGC-----GGAT----CG---GGGGGGCCAGGGGGTGTGCGCA
* *
936413 CATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTTATCAAACCTCG
566 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCG
*
936478 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGT
631 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * * * *
936543 GTCTGAAATGGGGACAC-TTTCAAATGGTCAAAAAAATGTTGTACACTTCGAGTTTTTGGGTGAA
696 GTCTGAAATGGGGACACTTTTCAAATGGTC-AAAAAATCTTGTACACTTCCAATTTTTAGCTGAA
* * * * * * *
936607 TTTTTTTATGCATGCCAACAAAAATACAAGTATCACGTCTACCAAGTTTGCTGTCAAAACTCCTT
760 TGTTTTTATGCACGCCAACAAAAATAAAAGGATCACGTCTACCAACTTTGCGGCCAAAACT-CTT
** *
936672 CCAAAAAAATTAAAAAAAATCCTGAACTGTAAAAAGTTTCA
824 CCAAAAAAATTAAAAAAAATCCCAAACCGTAAAAAGTTTCA
* * ** *
936713 AAAATCTTGAAAAATAAAAAATAAGTCATGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
936778 ATTGTATGAATTTATAAGCCATAAAAATGGCATTGCCACTCAAAAATATGAAGATGTGCCTAAAC
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTACCTAAAC
* *
936843 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCC
131 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCC
** * *
936908 TGCCCGCCCGCTCATTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
196 CACCCACCCGCTCATTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * **
936973 TCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACACAAAGGGGGACCCGATTGATCCCAGGCT
261 CCAGACCGAGGGTTGCGACAGCAGGATCGGTAGCACACAAAGGGGGACCCGACCGATCCCAGGCT
* *
937038 TACGCATCCCGCCCCTCTGGCCGGCTGAGCACCCCCACGCTCGTTTCATGTGTTGACTTAGGCAT
326 TACGCATCCCGCCCCTCTGGCAGGCTGAGCACCCCCACGCTCGTTTCATGGGTTGACTTAGGCAT
*
937103 TCGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAAATCGAACCGGACCGAG
391 ACGGAGTTCATTCCCAG-CT-A-CATA-AGAG-T-ATT-CCAG-----AATC-AA-C-GACCGAG
* * * * *
937168 GGTTACGGTAGCATATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTACTCACCGGGGACCA
441 GGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTACTCACCGGGGACCA
*
937233 TCGCTGGAGCATCGTCGAAGAACCGGACCAGCGGATCGGGGGGGCCAGGGGGTGTGCGCACGTGA
506 TCGCTGGAGCATCGTCGAAGAACCGGACCAGCGGATCGGGGGGGCCAGGGGGTGTGCGCACATGA
* * *
937298 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCGCCCTATCCCTCATCAAACCTTGAGAAC
571 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAAC
*
937363 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCGGTAGCCATTAAAGTGTCTG
636 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
937428 AATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAATTTTTAGCTGAATGTT
701 AAATGGGGACAC--TTTTCAAATGGTCAAAAAATCTTGTACACTTCCAATTTTTAGCTGAATGTT
* * * *
937493 TTTGTGCACGCCAACAAAAATAAAAGGATCATGTCTACCAACTTTGGGGCCAAAACTCTTCCGAA
764 TTTATGCACGCCAACAAAAATAAAAGGATCACGTCTACCAACTTTGCGGCCAAAACTCTTCCAAA
* **
937558 AAAATTGAAAAAAATCCCAAACCGTAAAAAGTTTTG
829 AAAATTAAAAAAAATCCCAAACCGTAAAAAGTTTCA
* *
937594 AAAATCGTGAAAAATAGAAAACGAGTTATCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACC
1 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
937659 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGA-GT-AA
66 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGT-ACCTAAA
937722 CCCACCTACCACCC-ATCGATCCAC
130 CCCACCTACCACCCTATCGATCCAC
937746 TACTTGTGCA
Statistics
Matches: 888, Mismatches: 110, Indels: 60
0.84 0.10 0.06
Matches are distributed among these distances:
869 5 0.01
870 351 0.40
872 1 0.00
875 1 0.00
876 1 0.00
878 1 0.00
879 12 0.01
880 174 0.20
881 149 0.17
882 80 0.09
883 15 0.02
885 3 0.00
887 3 0.00
891 3 0.00
892 3 0.00
893 1 0.00
894 4 0.00
895 23 0.03
896 57 0.06
897 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (864 bp):
AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACTCAGAAATATGAAGATGTACCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCC
CACCCACCCGCTCATTCCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCAGACCGAGGGTTGCGACAGCAGGATCGGTAGCACACAAAGGGGGACCCGACCGATCCCAGGCT
TACGCATCCCGCCCCTCTGGCAGGCTGAGCACCCCCACGCTCGTTTCATGGGTTGACTTAGGCAT
ACGGAGTTCATTCCCAGCTACATAAGAGTATTCCAGAATCAACGACCGAGGGTTACGATAGCACA
TGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTTACTCACCGGGGACCATCGCTGGAGCATCGT
CGAAGAACCGGACCAGCGGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TCAAATGGTCAAAAAATCTTGTACACTTCCAATTTTTAGCTGAATGTTTTTATGCACGCCAACAA
AAATAAAAGGATCACGTCTACCAACTTTGCGGCCAAAACTCTTCCAAAAAAATTAAAAAAAATCC
CAAACCGTAAAAAGTTTCA
Found at i:939890 original size:26 final size:26
Alignment explanation
Indices: 939860--939912 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
939850 GTTGACTTAG
* *
939860 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
939886 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
939912 G
1 G
939913 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:940324 original size:25 final size:26
Alignment explanation
Indices: 940284--940335 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
940274 GTTGACTTAG
*
940284 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
940310 GCATAC-GAGTCCATTCCCAGTCTAA
1 GCATACAGAGTCCATTCCCAGTCTAA
940335 G
1 G
940336 ATCAGAATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTCCATTCCCAGTCTAA
Found at i:942116 original size:26 final size:26
Alignment explanation
Indices: 942086--942138 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
942076 GTTGACTTAG
942086 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
942112 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
942138 G
1 G
942139 ATCGGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:942715 original size:900 final size:902
Alignment explanation
Indices: 940093--951940 Score: 14257
Period size: 900 Copynumber: 13.2 Consensus size: 902
940083 GGGTGCTGAG
* * ** * *
940093 CGCCCGCACGCTCATTTCGTATGTTGGCTTAGGCATACGAAGGTT-ATTCCCATTCTAAGATCGG
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAA-GTTCATTCCCAGTCTAAGATCAG
** * ** * * * * * *
940157 ACCAAACTGAGGGTTGCAACAGCAGGATCGATAGCACGTAGAGTGGGACAC-AGTCGATCCTCGG
65 ACCGGACTAAGGGTTGCGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGA-CCGATCCCCGG
* * * * * *
940221 CTTGTGCATCCCGCCCCTCTGGTCGGCTAAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGC
129 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * *
940286 ATACAGAGTTCATTCCCAGTCTAAGCATAC-GAGTCCATTCCCAGTCTAAGATCAGAATCGGACC
194 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGGACC
* * ** ** * *
940350 GAGGGTTGTGGCAGCAACAGGCTGGAATCAAGCATGTGCTGGTGCC-CAATTTTAC-T-ACCGGG
258 GAGGGTTGCGGCAGC-ACATGCTGGGCTCGGGCATGTGCTGGTGCCGC-ATTTTTCTTCGCCGGG
* * * * *
940412 GCA-CATCGCCAGAGCATCGT-CGGAGAACCTGGCC-GC-GCATTGGGTTTTCTCGACGATAAGG
321 GCACCATCGTCGGAGCATC-TCCGGAGAACCTGACCGGCGGCATTGGG-GTTC-CGACGAT-CGG
* *** * * * *
940473 TGCGATGGGGGGGTGCTACGCACATGATATTGTCGAAGGGT-CTGGTACTTGGCCCTTATACTGG
382 -GGGGCCGGGGGGTG-TGCGCACATGAT-GTG-CGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
940537 CCCCCTATCCTTCATC-AACCTCTGAGAACTCACACCCCCTTAAAGATCATTTGAGATTTTACAG
443 CCCCCTATCCCTCATCAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
940601 GTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
507 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * * *
940666 TTATACACTTGGAGTGTTTAGCTGAATTTTTTTGTGCACGCCAACATAAATACAAGAATCACGTC
572 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
940731 TACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCTAATCGGAAAAAGTTT
637 TACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* *
940796 CAAAAATCGTGAAAACTAGAAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGA
702 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
***
940861 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAA
767 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAA
* * * * * ** *
940926 ACCCACCTACCATCCTATCGATCCACAGCTTGCGTATCTCGTCTCTCTGGCCGGTGTAGTACCCG
832 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGACGTAGTGCCCG
*
940991 CCCGTC
897 CCCGCC
* * * * *
940997 CACCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCATTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
941062 CCGGTCCAAGGGTTGCGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCCGACCAATCCCCGGCT
66 CCGGACTAAGGGTTGCGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCT
* * * *
941127 TGCGCATCCCGCCCCTCT----GGTTGAGCGTCTGCACGCTCGTTTCATGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * * * *
941188 ACGGAATTCATTCCCAGTCTAAGCACATGGAGTTTATTCCCAATCTAAGATCAGACCGGATCGAG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
** * * * *
941253 GGTTGCAACAGCACATGCTAGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACC
261 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
** * * * ** *
941318 ATCACCGAAGCATCGT-CGGAGAACCTGATCGGTGGCATTGGGGTTTTGGCGATCGGGGGCGCCG
326 ATCGTCGGAGCATC-TCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCCG
* * *
941382 GGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCATATCCC
389 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
941447 TCATCAAACCTCGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
454 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
941512 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
519 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * *
941577 AGTTTTTAGCTGAATTCTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACGAAGTTTGG
584 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
941642 GG-CAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
649 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* *
941706 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGTCCATTGTATGAA
714 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
941771 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCA
779 TTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
941836 CCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCAACGTAGTGCCTGCCCGCC
844 CCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGACGTAGTGCCCGCCCGCC
* * ** *
941895 CGCCAGCCCGTTCGTTTCAACGGTTGGCTTAGGCATACGAAGTCCATTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
* * ** ** *
941960 ACGGACTGAGGGTTGCGGCAGCAGGATTGACAGCACACAGACGGGGACCCGACCGATCCCCGGCT
66 CCGGACTAAGGGTTGCGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCT
* * * * *
942025 TGTGCATCCCGCCCTTCTGGCCGG-TCGATCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCA
131 TGCGCATCCCGCCCCTCTGGCCGGCT-GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* *
942089 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAA
195 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * * * *
942154 GGGTTGCAGCAGCACATGCTGGGCTCGGGAATGTGCTGGGGCCGTATTTTTCTTCGTCGGGGCAC
260 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
** * *
942219 CATCACCGGAGCATCTCCGGAGAACCTGACCGGCGTCATTGGGGTTTCGACGATCGGGTGGG-CG
325 CATCGTCGGAGCATCTCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCG
* *
942283 GGGGGTGTGCGCACATGATGTGGGAT-GGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCC
389 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
*
942347 TCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAG
454 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
942412 TAGCAATTAAAGTGTCT-AGAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTC
519 TAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
942476 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC-AGCCAAGCTT
583 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTT
* * *
942540 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGGAAAAAGTTTCAAAAATCAT
647 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
*
942605 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATG
712 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
942670 AATTTACAAGCCATAAAAATGGCATTGGCATACA-AAATTTGAAGATATGCCTAAACCCACCTAC
777 AATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* ** * * * *
942734 CACCCTATCAATCCACATCTTGTGCATCCCGTCTCTCGGGCC-AGCGTAGTGCCCGACCGCC
842 CACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGA-CGTAGTGCCCGCCCGCC
* **
942795 TGCCCGGTCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGATCAG
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAG
* * * * * * * ** *
942859 ACCAGACTGAGGGTTACGGTAGTAGGATCGGCAGCACGTAGAGGGGGACCCGACTAATCCTC-GC
65 ACCGGACTAAGGGTTGCGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGC
* * * * *
942923 TTGCGCATCCCGCCCCTCTAGCCAGCTGAGCACCCGTATGCTCGTTTCGTGGGTTGACTTAGGCA
130 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
** * *
942988 TACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGA
195 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
** * * *
943053 GGGTTGCAACAGCACCTGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCTGGGGCAC
260 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
* *
943118 CATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCC-AGCGATCGGGGGGGCC
325 CATCGTCGGAGCATCTCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATC-GGGGGGCC
* *
943182 AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCC
388 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * * *
943247 CTCATCAAACCTTGAGAACGCACATCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGGCA
453 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
943312 -TAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
518 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * *
943376 GAGCTTTTACCTGAATTTTTTTATGCATGCCAA-AAAATATACAAGGATCACGTCTACCAAGTTT
583 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTT
* * * * ** * ** * *
943440 GGGACTAAAACTGCTTCCGAAAAAATTTTAAAAAATCATGTACCACAAAAATTTTCAAAAATCCT
647 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
*
943505 AAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
712 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* ** *
943570 AATTTACAAGCCATAAAAATGGCATTGTCACGCAGAAATATGAAGATGTGCCTAAACCCATCTAC
777 AATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
943635 CACCCTATCGATCCA-------CG-A--------CT-T-G-CG-C--A-T-----CCCGTC
842 CACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * * *
943668 CGCCCGCCTGCTCGTTTCGTCGGTTGGCTTTGGCATACGGAGTTTAGTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * **
943733 CTGGACTGAGGGTTACGGCAGCAGGATTGGCAGCATGTAGAGGGTGACCCGATTGATCCCCGGCT
66 CCGGACTAAGGGTTGCGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCT
* * * * *
943798 TGTGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGTACGCTCATTTCATGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
943863 ACGGAGTTCATTCCCAGTCTAAG-AT-C---G---A----C---C------C--A---GACCGAG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * *
943902 GGTTACGGCAGCACATGCTGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACC
261 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* * * * *
943967 ATC-ACTGGAGCATCAT-CGGAGAACCTAATCGGCGACGTTGGGGTTCCGACGATCGGGGGGGCC
326 ATCGTC-GGAGCATC-TCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC
944030 GGGGGG-GTTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
388 GGGGGGTG-TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
944094 CCTCATCAAACCTCGACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCC
452 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * *
944159 AGTAGCCATTAAAGTGTCTGTAATGGGGATACTTTTTTGAAATGGTCACAAAATCTTGTACACTT
517 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
944224 CGAGTTTTTAGCTGAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCACGTTTACCATGTTC
582 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
944289 AGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCAT
647 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
* * * * *
944354 GAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGGTTAAGGGACCATTATATG
712 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * **
944419 AATTTACAAGCAATAAAAATGGCTTTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
777 AATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
944484 CACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT--------GCC
842 CACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * * * *
944537 CGCTCGCCCACTTGTTTCATCGGTTGGCTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
* * * * ** * ** * *
944602 TCGAACTAAGGGTTGCGGTAGTAGGATTGACAGCACGTAAAGGGGGACCCGGTCGATCTCCGACT
66 CCGGACTAAGGGTTGCGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCT
*
944667 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * * * *
944732 ACGGAGTTCATTCCCAGTCTAAGCTTATGGAGTTCATTCCCAATCTAAGTTCAGACCAGTCCGAG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
** * *
944797 GGTTGCGGCAGCACATGC-GGCGCTCTAGCATGTGCTGGTGCCGCATTTTTCTTTGCCAGGGCAC
261 GGTTGCGGCAGCACATGCTGG-GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
* * * * * * * *
944861 CATTGTCAGAGCATCGCCGGAGAACTTGGCCGGC-GCATTAGGGTTCCGATGAT-GGGGGGCCAG
325 CATCGTCGGAGCATCTCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGG
* * * * *
944924 GGGGTGTGTGCACATGATGTGCGATGGATGCTAGTACTTGGCCTTTATATTGGCCCCTTATCCCT
390 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * *
944989 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTCCAGGTTTGTTGTCAGT
455 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
945054 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCTA
520 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
945119 GTTTTTAGCTGAATTTTTTTGTGCCTACCAACAAAAATA-AAGGCATCATGTCTACCAAGTTTGG
585 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG-ATCACGTCTACCAAGTTTGG
* * * * **
945183 AGCTAAAACGCCTTTCAAAAAAATTTTAAAAAATCATGAACCGTAAAAAGTTTCAAAAATCGTGA
649 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
* * **
945248 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGTACCATTGTACAAA
714 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
** * *
945313 TTTACAAGGTATAAAAATGGCATTGACACATC-GAAATATGAAGATGTG-CTGAAACCCACCTAC
779 TTTACAAGCCATAAAAATGGCATTGGCATA-CAGAAATATGAAGATGTGCCT-AAACCCACCTAC
* **
945376 CACCCTATCGATCCACGGCTTGCGCATCCCG-CCTCTCTGGTCGGTGTAGT----GCCCGCC
842 CACCCTATCGATCCACGGCTTGCGCATCCCGTCC-CTCTGGCCGACGTAGTGCCCGCCCGCC
* ** * *
945433 CGTCTACTCGCTCGTTTCGTCGGTTGGGTTAGGCATAC-AGAGTTCATT-CCAGTCTAAGATCTA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATC-A
** ** * * ** ** *
945496 -ACTAGACCGAGGGTTGTGGCAGCAGGATTGGCAGCACGCCGAGGGGGACCCGGTCGATCCCCAG
64 GACCGGACTAAGGGTTGCGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGG
*
945560 CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
129 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
945625 ATACGGAGTTCATT-CC---C--AG--T-C-----T-A-----A---T---ATCGGACCGGACCG
194 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* ** *
945664 AGGGTTGCGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGGTGCATTTTTCTTCGCCAGGGCA
259 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA
* * * * * * *
945729 CCATCATCGGAGCATCACCGAAGAACCTGATCGGTGGCATTGGGGTTCCGGCAATCGGGGGGCC-
324 CCATCGTCGGAGCATCTCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCG
*
945793 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GCCCGCTATCCC
389 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
945857 TGATC-AACCTCGAGAACTCACACCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCAGCCAG
454 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
945921 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
519 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * *
945986 AGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATATAAGGATGACGTCTACCAAGTTTTG
584 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * ** * * *
946051 GACCAAAACTCCTTGCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAATTCATGA
649 GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
946116 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
714 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
***
946181 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
779 TTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
946246 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCTTCCGCCCGCC
844 CCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGACGTAGTG--C--CCGCCCGCC
* * * * *
946309 CGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATTC-AGAGTTCATTCCCAATCTAAGATCGG
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAG
* * * * * *
946373 ACCGAACTGAGGGTT---ACAGCA--A---GCA-CAC--AGAGGGGGACCCGATCGATCCCCAGC
65 ACCGGACTAAGGGTTGCGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGC
* * *
946427 TTGCGCATCTCGCCCCTCTGACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
130 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* *
946492 TACGGAGTTCATTCCCGGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGAT-----CGGATCGA
195 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
** * * * * * * *
946551 GGGTTGCGATAACGCATGCTAGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGAAC
260 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCAC
** * * *
946616 CATCGTCGGAGCATCAT-CGGAGAACCTGACCGATGGCATTCGGGTTTCGATGATCGGGGGGGCC
325 CATCGTCGGAGCATC-TCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC
* * *
946680 GGGGGGGTGTGCGCACATGTTTTGTGATGGGTGCTGGTACTTGGCCCTTATTTGGCCCTTATATT
388 -GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA-------C----TTGGCCCTTATATT
*
946745 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
441 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
946810 GGTTTTCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAAGGTCACAAAAT
506 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
946875 CTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGTGCATGCCAATAACAATACAAGGATCACGT
571 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * * **
946940 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAATATCCCGAATCGCAAAAAGGA
636 CTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
*
947005 TCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
701 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
947070 ACCATTGTATGAATTTAGAAGCCATCAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
766 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTA
* * * *
947135 AACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCC
831 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGACGTAGTGCCC
**
947200 GCCTACC
896 GCCCGCC
* * *
947207 CGACCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC-AGAGTTCATTCCCAGTCTAACATCAG
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAG
* * * * ** * ** * * *
947271 ACCGGA-TCAAGGGTTCCAGTAGTAAAATCGACAGTATGTAGAGGGGGACCCGACCGATCCCCAG
65 ACCGGACT-AAGGGTTGCGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGG
* * *
947335 CTTGTGCATCCCGCCCCTCT-GCCCGATGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
129 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * * *
947399 ATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCA
194 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* * * *
947464 AGGGTTGTGGCATCACATGCTGGCCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCA
259 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCA
* * * * * *
947529 CCATCGTCGGAGCATCGCTGGAGAACCTGACTGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCT
324 CCATCGTCGGAGCATCTCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC
* * *
947594 GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGATACTTGGCCCTTATACTGGCCCCCTATCC
388 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
947659 CTCATCAAACCACGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCA
453 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * * *
947724 GTAGCCATTAAAGTGTCTAAAATGTGGAGACATTTTTCAAATGGTCACAAAATCTTGTACACTTC
518 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * * *
947789 GAGTTTTTGGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACG-CAAACCATGTCT
583 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC-TACCAAGTTT
* * ** *
947853 GGGGCCAAAACTCC-TTCAGAAAAATTTTTTAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCA
647 GGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
* * *
947917 TGAAAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACATGACGGCTTAAGGGACCATTGTAT
711 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
947982 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTA
776 GAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * * ** *
948047 CCACCCTATCGATCCACGGCTTGTGCATTCCATCTCTCTGGCCGGTGTAGTGCGCGCCCG-C
841 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGACGTAGTGCCCGCCCGCC
* *
948108 CGCCCGCCTGCCGCCTCATTTCCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGA
1 CGCCCG-C--CCG-CTCGTTT-CGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA
* * * * * * * * * * * *
948173 CTCGGATCAGA-TCAAGGGTTGTGTCAGCAAGAATCGGTAGCAGGCA-AGAGGGACCTGATCGAT
61 -TCAGACCGGACT-AAGGGTTGCGGCAGC-AGGATTGGTAGCACGTAGAGGGGGACCCGACCGAT
** * * * * * * **
948236 CCCTAGCTTGGCGCATCCCACCCCTCTGGGCTGACTGAGTGGCCTGCACGCTCATTTTAATGGGT
123 CCCCGGCTT-GCGCATCCCGCCCCTCT-GGCCGGCTGAG-CGCCCGCACGCTC-GTTTCGTGGGT
* *
948301 TGACTTACGCATACAGAG-TCATTCCCAGTCCTAAGCATACGGAGTTCATTCCCAAGTCCTAAGA
184 TGACTTAGGCATACGGAGTTCATTCCCAGT-CTAAGCATACGGAGTTCATTCCC-AGT-CTAAGA
* * * * *** *
948365 TTGGACCAGACTGAGGGTTGCGTCAGCACAATGGCTGGGCTCAAACATGTGCTGAGTGTCGCATT
246 TCGGACCGGACCGAGGGTTGCGGCAGCAC-AT-GCTGGGCTCGGGCATGTGCTG-GTGCCGCATT
* * * *
948430 TTCTCTTGGTCGGGGCACCATCG-CTGAAGCATCGT-CGGAGAACCTGACCGGCGGCATTGTGGT
308 TT-TCTTCGCCGGGGCACCATCGTC-GGAGCATC-TCCGGAGAACCTGACCGGCGGCATTGGGGT
* * * * *
948493 TACGGCGATCGGGGGGTCGAGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTCCTTGGC
370 TCCGACGATCGGGGGG-C-CG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
948558 CCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
432 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
948623 GATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
497 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
948688 TCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAAATACA
562 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACA
* *
948753 AGGATCACGTCTTCCAAGTTTGGGGCCAAAACT-CTTTCCAAAAAAATTTTAAAAAATCCCGAAC
626 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-CGAAAAAATTTTAAAAAATCCCGAAC
* * *
948817 CGTAAAAAGTTTCGAAGATCGTGAAATATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
690 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
948882 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
755 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGA
* * * * *
948947 AGATGTGCCAAAACCCAACTACCGCCCTGTCGATCCACGGCTTCCGCATCCCG-CCTCTCTGGCC
820 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCC-CTCTGGCC
* *
949011 GACGTA-T---TGCCCGCT
884 GACGTAGTGCCCGCCCGCC
* * * * * *
949026 CGCCCGCCCGCTCGCTTCGTTGGATGGCTTAAGCATACGGAGTTCATTCCCAGTCGAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
949091 CCGGACCAAGGGTTGTGGCAGCAGGATTGGTAGCACGCAGAGGGGGACCTGGCCGATCCCCAGCT
66 CCGGACTAAGGGTTGCGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCT
* * *
949156 TACGCATCCCGCCTCTCTGGCCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * *
949221 ACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * *
949286 GGTTGTGGCATCACATGCTGGCCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACC
261 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* * * * * *
949351 ATCGTCGGAGCATCGCTGGAGAACCTGACTGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCTGG
326 ATCGTCGGAGCATCTCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGG
* * *
949416 GGGGTGTGCGCACATGATGTGTGATGGGTGCTGATACTTGGCCCTTATACTGGCCCCCTATCCCT
390 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
949481 CATCAAACCACGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
455 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
949546 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTTGA
520 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * * ** *
949611 GTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAGGGATCACGTCTATGAAGTTTGTG
585 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * *
949676 GCAAAAAATCCTTCCGAAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG-
650 GCCAAAACTCCTTTCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGA
*
949740 AAAATAGAAAACGAGTCGTCTTG-CATGAAACTTCACGTAAAGGCTTAAGGG-CCATTGTAATGA
714 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT-ATGA
* *
949803 ATTT-CACAGCCATAGAAAATTGGCATTGGCACACAGAAATATG-AGATGT-CCTAAAACCAACC
778 ATTTACA-AGCCATA-AAAA-TGGCATTGGCATACAGAAATATGAAGATGTGCCT-AAACCCACC
* * *
949865 TACCCACCCTATCGATCCACGG-TTGC-CATCCCGT-CCTCTGGTCGACCGTAGTGGCCCGGCCA
839 TA-CCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGA-CGTAGT-GCCCGCCCG
949927 CC
901 CC
* * *
949929 CTGCCCGCCTC-CAT--TTTCGTCGGTTGCCTTAGGCATACCGGAGTTCATTCCTAGTCTAAGAT
1 C-GCCCGCC-CGC-TCGTTTCGTCGGTTGGCTTAGGCATA-CGAAGTTCATTCCCAGTCTAAGAT
** * ** * * *
949991 -AGGGTCAGACTAAGGGTTAATGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGACTGACCC
62 CA-GACCGGACTAAGGGTT-GCGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCC
* * * * * *
950055 CCGACTTGCGCATCCCGCCTCTCTGGCTGGCTGAGCACCCACACGCTCGTTTCGTGGTTTGACTT
125 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * * * *
950120 AGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTATGATCAGACCAG
190 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * * * * * * *
950185 ACTGAGGGCTGCGGTAGCACATGCTGGGCTTGGTCTTGTGCTGGTGCCACATTTTTCATCGCCGG
255 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGG
* * **
950250 GGCACCATCGTCGGAGCAT-TGTCGGAGAACCTGACCAGCGGCATTGGGCATCCGACGATCGGGG
320 GGCACCATCGTCGGAGCATCT-CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
*
950314 GGCCGGGGGGGTGTGCGCACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
384 GGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
950379 TATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
448 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
950444 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGCCACAAAATCTTGTAC
513 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
950509 ACTTCGAATTTTTAGCTGAATTTTTTTCTTCATGCCAACAAAAATACAAGGATCATGTCTACCAA
578 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * *
950574 GTTCGAGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
643 GTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
950639 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
708 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
950704 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCAA
773 TATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
950769 CTACCGCCCTGTCGATCCACGGCTTACCGCATCCCG-CCTCTCTGGCCGACGTA-T---TGCCCG
838 CTACCACCCTATCGATCCACGGCTT-GCGCATCCCGTCC-CTCTGGCCGACGTAGTGCCCGCCCG
*
950829 CT
901 CC
* * * * * * * *
950831 CGCTCGCCCGCTCGCTTCGTTGGATGGCTTAAGCATACGGAGTTCATTCCTAGTCGAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
950896 CCGGACCAAGGGTTGTGGCAGCAGGATTGGTAGCACGCAGAGGGGGACCTGGCCGATCCCCAGCT
66 CCGGACTAAGGGTTGCGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCT
* *
950961 TACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCAT
131 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * **
951026 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTCCCAGTGTAAGATCGGACCAGATTGAG
196 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
* * * *
951091 GGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCAGCATTTTTCTTC-ACGGGG-ACC
261 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
* *
951154 ATCGTCGGAGCATCCGCCGGAGAAACCTTGACCGGCGGCATTTGGGGTTCCGGCAGATCGGTGGG
326 ATCGTCGGAGCAT-CTCCGGAG-AACC-TGACCGGCGGCA-TTGGGGTTCCGAC-GATCGG-GGG
* * *
951219 AGCCGAGGGGGTGGGCGCACATGATGTGCGATGGATTGCTAGTACTTGGCCCTTATATTGGGCCC
385 -GCCG-GGGGGTGTGCGCACATGATGTGCGATGG-GTGCTGGTACTTGGCCCTTATATT-GGCCC
* *
951284 CCTATCCCTCATCAAACCT-AAGAACTCACA-CCCCTTGAAAGAGCATTTGAGATTTTATAGGTT
446 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTT
951347 TGCTG-CAGTAGCCATTAAAGTGTCCTGAAATGGGGACACTTTTTTTTC-AATGGTCCACAAAAT
510 TGCTGCCAGTAGCCATTAAAGTGT-CTGAAATGGGGACAC--TTTTTTCAAATGGT-CACAAAAT
* * * **
951410 CTTGTACACTTCGTGTTTTAAGCCTGAATTTTTTTTTGCATGCCAACAAAAAT-CAAGGATCATA
571 CTTGTACACTTCGAGTTTTTAG-CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * * * *
951474 TCTACCATGGTTTTTGGG-C-AAACTTCC-TTCCAAAAAAATTT-CAAAATCCCGAACCCTAAAA
635 TCTACCA-AG-TTTGGGGCCAAAAC-TCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGT-AAA
* *
951535 AAGTTTCAAAAATCATGAAAAA-AGAAAACAAGTCGTCTTGCTCA-GAAACTTCCACGTGAAGGC
696 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC-CATGAAACTT-CACGTGAAGGC
* *
951598 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGAT
759 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGAT
* * *
951663 GTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGCATCCCG-CCTCTCTGGTCGACG
824 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCC-CTCTGGCCGACG
951727 TAGTGCCCGCCCGCC
888 TAGTGCCCGCCCGCC
* * * * *
951742 CTCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAGACGGAGTTCATTCCAAGTCTAAGATCAGA
1 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
* ** * ** *
951807 CCGGA-TCATGGGTTGCAACAGTAGGATTGGTAGCATATAGAGGGGGATCCGACCGATCCCCGGC
66 CCGGACT-AAGGGTTGCGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGC
* * * *
951871 TTGCGCTTCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGACTTAGGCA
130 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
*
951936 CACGG
195 TACGG
951941 GGGGCCGGGG
Statistics
Matches: 9486, Mismatches: 1170, Indels: 569
0.85 0.10 0.05
Matches are distributed among these distances:
847 2 0.00
848 231 0.02
849 301 0.03
850 4 0.00
851 1 0.00
853 1 0.00
856 2 0.00
857 1 0.00
859 1 0.00
862 1 0.00
865 2 0.00
866 100 0.01
867 3 0.00
868 386 0.04
869 310 0.03
870 67 0.01
871 9 0.00
872 6 0.00
873 113 0.01
874 90 0.01
875 2 0.00
876 47 0.00
877 24 0.00
878 1 0.00
879 1 0.00
880 2 0.00
881 4 0.00
882 1 0.00
883 1 0.00
884 1 0.00
885 3 0.00
886 104 0.01
887 9 0.00
888 1 0.00
889 36 0.00
890 1 0.00
891 10 0.00
892 448 0.05
893 2 0.00
894 20 0.00
895 222 0.02
896 42 0.00
897 19 0.00
898 507 0.05
899 568 0.06
900 1304 0.14
901 435 0.05
902 1151 0.12
903 57 0.01
904 276 0.03
905 621 0.07
906 192 0.02
907 158 0.02
908 358 0.04
909 108 0.01
910 19 0.00
911 226 0.02
912 89 0.01
913 75 0.01
914 145 0.02
915 5 0.00
916 17 0.00
917 24 0.00
918 64 0.01
919 1 0.00
920 213 0.02
921 239 0.03
922 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
CCGGACTAAGGGTTGCGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCCGGCT
TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACC
ATCGTCGGAGCATCTCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAA
AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
TACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTGCGCATCCCGTCCCTCTGGCCGACGTAGTGCCCGCCCGCC
Found at i:946525 original size:26 final size:25
Alignment explanation
Indices: 946489--946540 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
946479 GTTGACTTAG
*
946489 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
946515 GCATACGGAGTTCATTCCAGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
946540 G
1 G
946541 ATCGGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:946736 original size:11 final size:12
Alignment explanation
Indices: 946720--946749 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
946710 GTGCTGGTAC
946720 TTGGCCCTTAT-
1 TTGGCCCTTATA
946731 TTGGCCCTTATA
1 TTGGCCCTTATA
946743 TTGGCCC
1 TTGGCCC
946750 CCTATCCCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.10, C:0.30, G:0.20, T:0.40
Consensus pattern (12 bp):
TTGGCCCTTATA
Found at i:947433 original size:26 final size:26
Alignment explanation
Indices: 947397--947449 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
947387 GTTGACTTAG
947397 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
947423 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
947449 G
1 G
947450 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:947639 original size:902 final size:901
Alignment explanation
Indices: 945623--951940 Score: 7980
Period size: 902 Copynumber: 7.0 Consensus size: 901
945613 GTTGACTTAG
* * *
945623 GCATACGGAGTTCATTCCCAGTCTAATATCGGACCGGACCGAGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * * *
945688 CTCGGGCATGTGCTGGTGGTGCATTTTTCTTCGCCAGGGCACCATCATCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * * * *
945753 ACCTGATCGGTGGCATTGGGGTTCCGGCAATC-GGGGGGC-CGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGT
* * *
945816 GATGGGTGCTGGTACTTGGCCCTTATATT-GCCCGCTATCCCTGATC-AACCTCGAGAACTCACA
196 GATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
945879 CCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
945944 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
946009 GCATGCCAAAAAAAATATAAGGATGACGTCTACCAAGTTTTGGACCAAAACTCCTTGCAAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
** * * *
946074 TTTTAAAAAATCCCGAACCACAAAAAGTTTTAAAATTCATGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
946139 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
946204 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
586 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
946269 ATCCCGTCTCTCTGGCTGGCGTAGTGCCCTTCCGCCCGCCCGCCCGCCCGTTCGTTTTGTCGGTT
651 ATCCCGTCTCTCTGGCCGACGTAGTG--C--CCG-CCTCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * *
946334 GGCTTAGGCATTCAGAGTTCATTCCCAATCTAAGATCGGACC-GAACTGAGGGTT-A-CAGC---
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-AAGGGTTCAGCAGCAGG
* * * * *
946393 A-----AGCACACAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCTCGCCCCTCTGACCGAC
775 ATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
946453 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGGTCTAA
840 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
946515 GCATACGGAGTTCATT-CCAGTCTAAGA-T----CGGATCGAGGGTTGCGATAACGCATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
946574 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCACCGGGGAACCATCGTCGGAGCATC-ATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCT-GGAG
** * * ** * *
946638 AACCTGACCGATGGCATTCGGGTTTCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGTTTT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGG-CGGGGGGGTGTGCGCACATGATGT
*
946703 GTGATGGGTGCTGGTACTTGGCCCTTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
194 GTGATGGGTGCT-G-A---------TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
946768 TTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAA
248 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
946833 AGTGTCTAAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCAAGTTTTTAGC
313 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
946898 TGAATTGTTTTGTGCATGCCAATAACAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
378 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * ** *
946963 CCTTCCGAAAAAATTTTAAAATATCCCGAATCGCAAAAAGGATCAAAAATCGTGAAAAATAAAAA
443 CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
*
947028 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCC
508 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
947093 ATCAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
573 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
947158 CCAAGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCTACCCGACCGCCCGCTCGTT
638 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCT-CCCGCCCGCCCGCTCGTT
* * *
947223 TCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAACATCAGACCGGATCAAGGGTTCC
702 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTT-C
* * ** ** * * * *
947288 AGTAGTAAAATCGACAGTATGTAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCCGCCCCT
766 AGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCT
* *
947353 CT-GCCCGATGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
831 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
947417 GTCTAA
896 GTCTAA
* * * * * *
947423 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTTGTGGCATCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
947488 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * *
947553 ACCTGACTGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGT
* *
947618 GATGGGTGCTGATACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACA
196 GATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
947683 CTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
947748 TGGAGACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
947813 GCATGCCAATAAAAATACAAGGATCACG-CAAACCATGTCTGGGGCCAAAACTCCTT-CAGAAAA
391 GCATGCCAAAAAAAATACAAGGATCACGTC-TACCAAGTTTGGGGCCAAAACTCCTTCCA-AAAA
* * ** *
947876 ATTTTTTAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
947941 TGCCATCAAACTTCACATGACGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
948006 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGT
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * *
948071 GCATTCCATCTCTCTGGCCGGTGTAGTGCGCGCC-CGCCGCCCGCCTGCCGCCTCATTTCCGTCG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTC-CCGCCCG-C--CCG-CTCGTTT-CGTCG
* * * * * **
948135 GTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGACTCGGATCAGATCAAGGGTTGTGTCAG
708 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGGATCAAGGGTTCAG-CAG
* * * * * * *
948200 CAAGAATCGGTAGCAGGCA-AGAGGGACCTGATCGATCCCTAGCTTGGCGCATCCCACCCCTCTG
771 C-AGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTT-GCGCATCCCGCCCCTCT-
* * * * * ** * *
948264 GGCTGACTGAGTGGCCTGCACGCTCATTTTAATGGGTTGACTTACGCATACAGAG-TCATTCCCA
833 GGCCGGCTGAG-CGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
948328 GTCCTAA
896 GT-CTAA
* * *
948335 GCATACGGAGTTCATTCCCAAGTCCTAAGATTGGACCAGACTGAGGGTTGCGTCAGCACAATGGC
1 GCATACGGAGTTCATTCCC-AGT-CTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAC-AT-GC
*** * *** *
948400 TGGGCTCAAACATGTGCTGAGTGTCGCATTTTCTCTTGGTCGGGGCACCATCG-CTGAAGCATCG
62 TGGGCTCGGGCATGTGCTG-GTGCCGCATTTT-TCTTCACCGGGGCACCATCGTC-GGAGCATCG
* * *
948464 -TCGGAGAACCTGACCGGCGGCATTGTGGTTACGGCGATCGGGGGGTCGAGAGGGGGTGTGCGCA
124 CT-GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCG-G-GGGGGTGTGCGCA
* * *
948528 CATGATGTGTGATGGGTGCTGGTCCTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCG
186 CATGATGTGTGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
948593 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGT
251 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
948658 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGA
316 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
948723 ATTTTTTTATGCATGCCAAAAAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACTCT
381 ATTTTTTTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * *
948788 TTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAGATCGTGAAATATAGAAAAC
445 TTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
948853 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
510 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * * *
948918 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCAACTACCGCCCTGTCGATCC
575 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
948983 ACGGCTTCCGCATCCCGCCTCTCTGGCCGACGTATTGCCCG-CT--CGCCCGCCCGCTCGCTTCG
640 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTCCCGCCCGCCCGCTCGTTTCG
* * * * * **
949045 TTGGATGGCTTAAGCATACGGAGTTCATTCCCAGTCGAAGATCAGACCGGACCAAGGGTTGTGGC
705 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTT-CAGC
* * * * *
949110 AGCAGGATTGGTAGCACGCAGAGGGGGACCTGGCCGATCCCCAGCTTACGCATCCCGCCTCTCTG
769 AGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTG
*
949175 GCCGGCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
834 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
949240 TAA
899 TAA
* * * * * *
949243 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTTGTGGCATCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
949308 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * *
949373 ACCTGACTGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGT
* *
949438 GATGGGTGCTGATACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCACGAGAACTCACA
196 GATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
949503 CTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
949568 GGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * * *
949633 GCATGCCAAAAAAAATACAGGGATCACGTCTATGAAGTTTGTGGCAAAAAATCCTTCCGAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAA
*
949698 TTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTG-AAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
949762 G-CATGAAACTTCACGTAAAGGCTTAAGGG-CCATTGTAATGAATTT-CACAGCCATAGAAAATT
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT-ATGAATTTACA-AGCCATA-AAAA-T
* *
949824 GGCATTGGCACACAGAAATATG-AGATGT-CCTAAAACCAACCTACCCACCCTATCGATCCACGG
581 GGCATTGGCACGCAGAAATATGAAGATGTGCCT-AAACCCACCTA-CCACCCTATCGATCCACGG
* *
949887 -TTGC-CATCCCGTC-CTCTGGTCGACCGTAGTGGCCCGGCCACCCTGCCCGCCTC-CAT--TTT
644 CTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGT-GCCC-GCCTCCC-GCCCGCC-CGC-TCGTTT
* * ** *
949946 CGTCGGTTGCCTTAGGCATACCGGAGTTCATTCCTAGTCTAAGAT-AGGGTCAGA-CTAAGGGTT
703 CGTCGGTTGGCTTAGGCATA-CGGAGTTCATTCCCAGTCTAAGATCA-GACCGGATC-AAGGGTT
* * * *
950009 AATGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGACTGA-CCCCCGACTTGCGCATCCCGC
765 CA--GCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCAG-CTTGCGCATCCCGC
* * * * * *
950073 CTCTCTGGCTGGCTGAGCACCCACACGCTCGTTTCGTGGTTTGACTTAGGCATACAGAGTTCATT
827 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
950138 CCCAGTCTAA
892 CCCAGTCTAA
* * * ** * * * *
950148 GCATACGAAGTTCATTCCCAATCTATGATCAGACCAGACTGAGGGCTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
950213 CTTGGTCTTGTGCTGGTGCCACATTTTTCATCGCCGGGGCACCATCGTCGGAGCATTG-TCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* ** * * *
950277 AACCTGACCAGCGGCATTGGGCATCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGGTGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTG
* *
950342 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 TGATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
950407 ACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
950472 GGGGACACTTTATTCAAATGGCCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTC
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
950537 TTCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTCGAGGCCAAAACTCCTTTCAAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
*
950602 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
950667 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
950732 TTGGCATGCAGAAATATGAAGATGTGCCAAAACCCAACTACCGCCCTGTCGATCCACGGCTTACC
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-GC
* * * * * *
950797 GCATCCCGCCTCTCTGGCCGACGTATTGCCCG-CT--CGCTCGCCCGCTCGCTTCGTTGGATGGC
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * ** *
950859 TTAAGCATACGGAGTTCATTCCTAGTCGAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATT
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTT-CAGCAGCAGGATC
* * *
950924 GGTAGCACGCAGAGGGGGACCTGGCCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCGGCTGA
778 GGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
*
950989 GCGCCCGAACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** *
951048 GCATACGGAGTTCGTTCCCAGTGTAAGATCGGACCAGATTGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
951113 CTCGAGCATGTGCTGGTGCAGCATTTTTCTTCA-CGGGG-ACCATCGTCGGAGCATCCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCAT-CGCTGGAG
* * *
951176 AAACCTTGACCGGCGGCATTTGGGGTTCCGGCAGATCGGTGGGAGCCGAGGGGGTGGGCGCACAT
130 -AACC-TGACCGGCGGCA-TTGGGGTTCCGGC-GATCGG-GGG-GGCGGGGGGGTGTGCGCACAT
* * *
951241 GATGTGCGATGGATTGCT-AGTACTTGGCCCTTATATTGGGCCCCCTATCCCTCATCAAACCT-A
189 GATGTGTGATGG-GTGCTGA-TACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACCTCG
*
951304 AGAACTCACA-CCCCTTGAAAGAGCATTTGAGATTTTATAGGTTTGCTG-CAGTAGCCATTAAAG
251 AGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
951367 TGTCCTGAAATGGGGACACTTTTTTTTC-AATGGTCCACAAAATCTTGTACACTTCGTGTTTTAA
315 TGT-CTGAAATGGGGACAC--TTTTTTCAAATGGT-CACAAAATCTTGTACACTTCGAGTTTTTA
* * ** * *
951431 GCCTGAATTTTTTTTTGCATGCCAACAAAAAT-CAAGGATCATATCTACCATGGTTTTTGGG-C-
376 G-CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCA-AG-TTTGGGGCCA
* * *
951493 AAACTTCCTTCCAAAAAAA-TTT-CAAAATCCCGAACCCTAAAAAAGTTTCAAAAATCATGAAAA
438 AAAC-TCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAA
*
951556 A-AGAAAACAAGTCGTCTTGCTCA-GAAACTTCCACGTGAAGGCTTAAGGGACCATTGTATGAAT
501 ATAGAAAACGAGTCGTCTTGC-CATGAAACTT-CACGTGAAGGCTTAAGGGACCATTGTATGAAT
**
951619 TTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
564 TTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * * * *
951684 CCTATCAATCCATGGCTTGCGCATCCCGCCTCTCTGGTCGACGTAGTGCCCGCCCGCCCTCTCGC
629 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCTCCCGCCCGC
* *
951749 CCGCTCGTTTCGTCGGTTGGCTTAGGCAGACGGAGTTCATTCCAAGTCTAAGATCAGACCGGATC
693 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC
* * * * *** * * *
951814 ATGGGTTGCAACAGTAGGATTGGTAGCATATAGAGGGGGATCCGACCGATCCCCGGCTTGCGCTT
758 AAGGGTT-CAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCAT
* * * *
951879 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCCCGTTTCATGGGTTGACTTAGGCACACGG
822 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
951941 GGGGCCGGGG
Statistics
Matches: 4718, Mismatches: 568, Indels: 261
0.85 0.10 0.05
Matches are distributed among these distances:
886 103 0.02
887 6 0.00
888 1 0.00
889 30 0.01
890 1 0.00
891 10 0.00
892 16 0.00
897 20 0.00
898 143 0.03
899 104 0.02
900 518 0.11
901 84 0.02
902 926 0.20
903 40 0.01
904 156 0.03
905 618 0.13
906 192 0.04
907 163 0.03
908 348 0.07
909 121 0.03
910 20 0.00
911 222 0.05
912 88 0.02
913 74 0.02
914 144 0.03
915 6 0.00
916 17 0.00
917 14 0.00
918 71 0.02
919 1 0.00
920 211 0.04
921 247 0.05
922 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCTGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCGCACATGATGTGT
GATGGGTGCTGATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTCAGCAGCAGGATCGGT
AGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:948345 original size:26 final size:28
Alignment explanation
Indices: 948309--948363 Score: 87
Period size: 26 Copynumber: 2.0 Consensus size: 28
948299 GTTGACTTAC
948309 GCATACAGAG-TCATTCCC-AGTCCTAA
1 GCATACAGAGTTCATTCCCAAGTCCTAA
*
948335 GCATACGGAGTTCATTCCCAAGTCCTAA
1 GCATACAGAGTTCATTCCCAAGTCCTAA
948363 G
1 G
948364 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 9 0.35
27 8 0.31
28 9 0.35
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (28 bp):
GCATACAGAGTTCATTCCCAAGTCCTAA
Found at i:949253 original size:26 final size:26
Alignment explanation
Indices: 949217--949269 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
949207 GTTGACTTAG
949217 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
949243 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
949269 G
1 G
949270 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:950159 original size:26 final size:26
Alignment explanation
Indices: 950122--950172 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
950112 TTTGACTTAG
*
950122 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
950148 GCATAC-GAAGTTCATTCCCAATCTA
1 GCATACAG-AGTTCATTCCCAATCTA
950173 TGATCAGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:951058 original size:26 final size:26
Alignment explanation
Indices: 951022--951074 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
951012 GTTGACTTAG
951022 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
951048 GCATACGGAGTTCGTTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
951074 G
1 G
951075 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:954866 original size:26 final size:26
Alignment explanation
Indices: 954837--954889 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
954827 GTTGACTTAG
*
954837 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
954863 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
954889 G
1 G
954890 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:956765 original size:59 final size:58
Alignment explanation
Indices: 956693--956965 Score: 232
Period size: 59 Copynumber: 4.7 Consensus size: 58
956683 TCAACTTCCT
*
956693 AAATT-ATACTTTCAAACTTTTCCTCCTAAAAATATTTTTGGAAATTTATTTTTAAGGA
1 AAATTGATACTTTC-AACTTTTCCTCCTAAAAATATTTTTGAAAATTTATTTTTAAGGA
*
956751 AAATTGATACTTTCAACTTTTCC-CC-AAAAATAATTTTTTTTGAAAATTTA-TTTAAAGGA
1 AAATTGATACTTTCAACTTTTCCTCCTAAAAAT-A---TTTTTGAAAATTTATTTTTAAGGA
* *
956810 AAATTGATACTTTCAACCTTTCCT--TAAAAATCCCTTTTTTTTTTTTGAAAATTTATTTTTAAG
1 AAATTGATACTTTCAACTTTTCCTCCTAAAAA---------TATTTTTGAAAATTTATTTTTAAG
956873 GA
57 GA
* * *
956875 AAATGGATACTTTCAACTTTT-CT-CT-AAAATATTTTCGAAAATTT-TGATTTTCAGG-
1 AAATTGATACTTTCAACTTTTCCTCCTAAAAATATTTTTGAAAATTTAT--TTTTAAGGA
*
956930 AGATTGATACTTTC-ACTTTTCC-CC-AAAAATATTTTT
1 AAATTGATACTTTCAACTTTTCCTCCTAAAAATATTTTT
956966 TTTGGAACTT
Statistics
Matches: 179, Mismatches: 13, Indels: 49
0.74 0.05 0.20
Matches are distributed among these distances:
54 7 0.04
55 37 0.21
56 13 0.07
57 3 0.02
58 14 0.08
59 43 0.24
60 13 0.07
64 20 0.11
65 28 0.16
68 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (58 bp):
AAATTGATACTTTCAACTTTTCCTCCTAAAAATATTTTTGAAAATTTATTTTTAAGGA
Found at i:957024 original size:15 final size:15
Alignment explanation
Indices: 957004--957058 Score: 65
Period size: 15 Copynumber: 3.6 Consensus size: 15
956994 AATAGAATAA
*
957004 TAAAAAAAATAAAAG
1 TAAAACAAATAAAAG
* *
957019 TGAAAATAAATAAAAA
1 T-AAAACAAATAAAAG
*
957035 TAAAACAAAGAAAAG
1 TAAAACAAATAAAAG
957050 TAAAACAAA
1 TAAAACAAA
957059 AAATAAAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
15 21 0.62
16 13 0.38
ACGTcount: A:0.76, C:0.04, G:0.07, T:0.13
Consensus pattern (15 bp):
TAAAACAAATAAAAG
Found at i:957133 original size:16 final size:16
Alignment explanation
Indices: 957108--957148 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
957098 CTAATCTTAT
957108 AAATATAAAAACAAATA
1 AAATA-AAAAACAAATA
*
957125 AAATAAAAAATAAATA
1 AAATAAAAAACAAATA
957141 AAA-AAAAA
1 AAATAAAAA
957149 CCTGGAGGCG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 5 0.22
16 13 0.57
17 5 0.22
ACGTcount: A:0.83, C:0.02, G:0.00, T:0.15
Consensus pattern (16 bp):
AAATAAAAAACAAATA
Found at i:958044 original size:18 final size:19
Alignment explanation
Indices: 958023--958098 Score: 70
Period size: 18 Copynumber: 4.2 Consensus size: 19
958013 AAATTATAGG
958023 ATAAAAAAAT-AATAATAT
1 ATAAAAAAATAAATAATAT
** *
958041 ATAATTAAATAAATAA-AA
1 ATAAAAAAATAAATAATAT
* *
958059 ATACAAAAATAAATAAAAT
1 ATAAAAAAATAAATAATAT
958078 A-AAAAATAATAAA-AATAT
1 ATAAAAA-AATAAATAATAT
958096 ATA
1 ATA
958099 TATTATTAAT
Statistics
Matches: 45, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
18 31 0.69
19 14 0.31
ACGTcount: A:0.74, C:0.01, G:0.00, T:0.25
Consensus pattern (19 bp):
ATAAAAAAATAAATAATAT
Found at i:958052 original size:8 final size:8
Alignment explanation
Indices: 958023--958127 Score: 50
Period size: 7 Copynumber: 13.9 Consensus size: 8
958013 AAATTATAGG
*
958023 ATAAAAAA
1 ATAAATAA
958031 AT-AAT-A
1 ATAAATAA
*
958037 ATATATAA
1 ATAAATAA
*
958045 TTAAATAA
1 ATAAATAA
958053 AT-AA-AA
1 ATAAATAA
958059 ATACAA-AA
1 ATA-AATAA
958067 ATAAATAAA
1 ATAAAT-AA
958076 ATAAA-AA
1 ATAAATAA
958083 AT-AATAA
1 ATAAATAA
*
958090 A-AATATAT
1 ATAA-ATAA
* *
958098 ATATTATTA
1 ATA-AATAA
958107 AT-AATAA
1 ATAAATAA
958114 ATAAAT-A
1 ATAAATAA
958121 ATAAATA
1 ATAAATA
958128 CATAGGATAT
Statistics
Matches: 73, Mismatches: 11, Indels: 26
0.66 0.10 0.24
Matches are distributed among these distances:
6 9 0.12
7 28 0.38
8 24 0.33
9 12 0.16
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (8 bp):
ATAAATAA
Found at i:958055 original size:4 final size:4
Alignment explanation
Indices: 958023--958127 Score: 50
Period size: 4 Copynumber: 27.8 Consensus size: 4
958013 AAATTATAGG
* * *
958023 ATAA AAAA AT-A AT-A ATAT ATAA TTAA ATAA AT-A A-AA ATACA A-AA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA-A ATAA
* * *
958067 ATAA ATAAA ATAA A-AA AT-A ATAA A-AA TATAT ATATT ATTA AT-A ATAA
1 ATAA AT-AA ATAA ATAA ATAA ATAA ATAA -ATAA ATA-A ATAA ATAA ATAA
958114 ATAA AT-A ATAA ATA
1 ATAA ATAA ATAA ATA
958128 CATAGGATAT
Statistics
Matches: 79, Mismatches: 9, Indels: 26
0.69 0.08 0.23
Matches are distributed among these distances:
3 26 0.33
4 43 0.54
5 10 0.13
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.29
Consensus pattern (4 bp):
ATAA
Found at i:958077 original size:27 final size:26
Alignment explanation
Indices: 958027--958175 Score: 86
Period size: 27 Copynumber: 5.4 Consensus size: 26
958017 TATAGGATAA
* *
958027 AAAAATAATAATATATAATTAAATAAAT
1 AAAAATAA-AAAATA-AATAAAATAAAT
958055 AAAAATACAAAAATAAATAAAATAAA-
1 AAAAATA-AAAAATAAATAAAATAAAT
* ** *
958081 AAATAATAAAAATATATATATTATTAAT
1 AAA-AATAAAAA-ATAAATAAAATAAAT
* * *
958109 AATAAATAAATAATAAAT-ACATAGGAT
1 AA-AAATAAAAAATAAATAAAATA-AAT
* * *
958136 ATACATAAAATATAAAATAAAATAAAAAT
1 AAAAATAAAAAAT-AAATAAAAT--AAAT
958165 AAAAATAAAAA
1 AAAAATAAAAA
958176 TGACAAAGAT
Statistics
Matches: 90, Mismatches: 21, Indels: 19
0.69 0.16 0.15
Matches are distributed among these distances:
26 17 0.19
27 36 0.40
28 24 0.27
29 12 0.13
30 1 0.01
ACGTcount: A:0.70, C:0.02, G:0.01, T:0.26
Consensus pattern (26 bp):
AAAAATAAAAAATAAATAAAATAAAT
Found at i:958157 original size:12 final size:12
Alignment explanation
Indices: 958140--958174 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
958130 TAGGATATAC
958140 ATAAAATATAAA
1 ATAAAATATAAA
958152 ATAAAATA-AAA
1 ATAAAATATAAA
958163 ATAAAA-ATAAA
1 ATAAAATATAAA
958174 A
1 A
958175 ATGACAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 13 0.59
12 8 0.36
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (12 bp):
ATAAAATATAAA
Found at i:958165 original size:6 final size:6
Alignment explanation
Indices: 958142--958176 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
958132 GGATATACAT
958142 AAAATA TAAAAT- AAAATA AAAATA AAAATA AAAAT
1 AAAATA -AAAATA AAAATA AAAATA AAAATA AAAAT
958177 GACAAAGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 17 0.63
7 5 0.19
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:958175 original size:12 final size:11
Alignment explanation
Indices: 958047--958176 Score: 61
Period size: 12 Copynumber: 11.4 Consensus size: 11
958037 ATATATAATT
958047 AAAT-AAATAA
1 AAATAAAATAA
958057 AAATACAAA-AA
1 AAATA-AAATAA
958068 TAAATAAAATAA
1 -AAATAAAATAA
*
958080 AAA-ATAATAA
1 AAATAAAATAA
* *
958090 AAATATATATAT
1 AAATA-AAATAA
* *
958102 TATTAATAATAA
1 AAATAA-AATAA
*
958114 ATAA-ATAATAA
1 A-AATAAAATAA
** *
958125 ATACATAGGATAT
1 A-A-ATAAAATAA
*
958138 ACATAAAATATA
1 AAATAAAATA-A
958150 AAATAAAATAA
1 AAATAAAATAA
958161 AAATAAAAATAA
1 AAAT-AAAATAA
958173 AAAT
1 AAAT
958177 GACAAAGATA
Statistics
Matches: 89, Mismatches: 19, Indels: 22
0.68 0.15 0.17
Matches are distributed among these distances:
10 13 0.15
11 29 0.33
12 41 0.46
13 6 0.07
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:958459 original size:14 final size:15
Alignment explanation
Indices: 958440--958472 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
958430 CTTTTTTTCA
958440 TTTTTTTGCTTTTTT
1 TTTTTTTGCTTTTTT
958455 TTTTTTTGCTTTTTT
1 TTTTTTTGCTTTTTT
958470 TTT
1 TTT
958473 AAATTGATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.88
Consensus pattern (15 bp):
TTTTTTTGCTTTTTT
Found at i:958564 original size:120 final size:118
Alignment explanation
Indices: 958361--958574 Score: 299
Period size: 120 Copynumber: 1.8 Consensus size: 118
958351 TTGTTTTTAC
*
958361 CAAAGCTCCTTTAAACAGAGGCTCAACGACTTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
1 CAAAGCTCCTTTAAACAGAGGCTCAACGACTTTGAGAAACATAAACAAAGCTCCTCTAAATAGAG
*
958426 GTAACTTTTTTTCATTTTTTTGCTTTTTTTTTTTTTGCTTTTTTTTTAAATTGAT
66 GCAACTTTTTTTCATTTTTTT--TTTTTTTTTTTTTGCTTTTTTTTTAAATTGAT
* * *
958481 CAAAGCT-CTTCTAAGCAGAGGTTCAATGACTTTGAGAAACATAAACAAAGCTCCTCT-AATAGA
1 CAAAGCTCCTT-TAAACAGAGGCTCAACGACTTTGAGAAACATAAACAAAGCTCCTCTAAATAGA
* **
958544 GGC-ATTTTTGTTTTGTTTTTTTTTTTTTTTT
65 GGCAACTTTT-TTTCATTTTTTTTTTTTTTTT
958575 AAATGATCAA
Statistics
Matches: 84, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
117 9 0.11
118 5 0.06
119 21 0.25
120 49 0.58
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (118 bp):
CAAAGCTCCTTTAAACAGAGGCTCAACGACTTTGAGAAACATAAACAAAGCTCCTCTAAATAGAG
GCAACTTTTTTTCATTTTTTTTTTTTTTTTTTTTGCTTTTTTTTTAAATTGAT
Found at i:958620 original size:102 final size:101
Alignment explanation
Indices: 958448--958665 Score: 316
Period size: 102 Copynumber: 2.1 Consensus size: 101
958438 CATTTTTTTG
* * *
958448 CTTTTTTTTTTTTTGCTTTTTTTTTAAATTGATCAAAGCTCTTCTAAGCAGAGGTTCAATGACTT
1 CTTTTTTTTTTTTTTCTTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTT
958513 TGAGAAACATAAACAAAGCTCCTCT-AATAGAGGC-A
66 TGAGAAACATAAACAAAGCT-CTCTAAATAGAGGCAA
* *
958548 TTTTTGTTTTGTTTTTTTTTTTTTTTTAAA-TGATCAAAGCTCCTCTAAGTCAGAGGCTCAATGA
1 CTTTT-TTTT-TTTTTTCTTTTTTTTTAAATTGATCAAAGCTCCTCTAAG-CAGAGGCTCAATGA
**
958612 CTTTGAGAAACATAAATGAAGCTCTCTAAATAGAGGCAA
63 CTTTGAGAAACATAAACAAAGCTCTCTAAATAGAGGCAA
958651 CTTTTTTTTTTTTTT
1 CTTTTTTTTTTTTTT
958666 AAAAGCTCCT
Statistics
Matches: 105, Mismatches: 8, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
100 4 0.04
101 32 0.30
102 64 0.61
103 5 0.05
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (101 bp):
CTTTTTTTTTTTTTTCTTTTTTTTTAAATTGATCAAAGCTCCTCTAAGCAGAGGCTCAATGACTT
TGAGAAACATAAACAAAGCTCTCTAAATAGAGGCAA
Found at i:958823 original size:45 final size:45
Alignment explanation
Indices: 958752--958851 Score: 125
Period size: 45 Copynumber: 2.2 Consensus size: 45
958742 TGCCTAACAA
** *
958752 ACCACGACTTTGGA-AAAGTAAATTGCTCCT-CTACACACAGAGGC
1 ACCACGACTTTTTAGAAAGTAAATTGCTCCTCCTAAAC-CAGAGGC
*
958796 -CCAACGACTTTTTAGAAAGTAACTTGCTCCTCCTAAACCAGAGGC
1 ACC-ACGACTTTTTAGAAAGTAAATTGCTCCTCCTAAACCAGAGGC
958841 ACCACGACTTT
1 ACCACGACTTT
958852 CCCCTCTAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
43 2 0.04
44 9 0.19
45 30 0.62
46 7 0.15
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (45 bp):
ACCACGACTTTTTAGAAAGTAAATTGCTCCTCCTAAACCAGAGGC
Found at i:959470 original size:22 final size:22
Alignment explanation
Indices: 959422--959480 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
959412 GATTTCACTC
959422 CTCAAAGATTCTCATTTTGAAAT
1 CTCAAAGATTCTCA-TTTGAAAT
**
959445 -TCAAAGATTCTCATTTGAGTT
1 CTCAAAGATTCTCATTTGAAAT
*
959466 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
959481 CAAAACATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 26 0.81
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAAAT
Found at i:960569 original size:8 final size:8
Alignment explanation
Indices: 960553--960597 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
960543 TTGAATCCCT
*
960553 TTTTTTCA
1 TTTTCTCA
960561 TTTTCTCA
1 TTTTCTCA
960569 TTTTCTCA
1 TTTTCTCA
* *
960577 TTTTTTCTT
1 TTTTCTC-A
960586 TTTTCTCA
1 TTTTCTCA
960594 TTTT
1 TTTT
960598 TTTTCTTTTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
8 25 0.81
9 6 0.19
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (8 bp):
TTTTCTCA
Found at i:960588 original size:24 final size:23
Alignment explanation
Indices: 960553--960646 Score: 79
Period size: 23 Copynumber: 4.0 Consensus size: 23
960543 TTGAATCCCT
*
960553 TTTTTTCATTTTCTCATTTTCTCA
1 TTTTTTCTTTTTCTCATTTT-TCA
*
960577 TTTTTTCTTTTTTCTCATTTTT-T
1 TTTTTTC-TTTTTCTCATTTTTCA
* *
960600 TTCTTTTTTTTTTCATCA-TCTTC-
1 TT-TTTTCTTTTTC-TCATTTTTCA
960623 TCTTTTT-TTTTTCTCATTTTTCA
1 T-TTTTTCTTTTTCTCATTTTTCA
960646 T
1 T
960647 CCATTGTTGA
Statistics
Matches: 58, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
21 3 0.05
22 10 0.17
23 17 0.29
24 16 0.28
25 12 0.21
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (23 bp):
TTTTTTCTTTTTCTCATTTTTCA
Found at i:960608 original size:19 final size:17
Alignment explanation
Indices: 960551--960599 Score: 66
Period size: 17 Copynumber: 3.0 Consensus size: 17
960541 ATTTGAATCC
*
960551 CTTTTTT-TCATTTTCT
1 CTTTTTTCTCATTTTTT
*
960567 C-ATTTTCTCATTTTTT
1 CTTTTTTCTCATTTTTT
960583 CTTTTTTCTCATTTTTT
1 CTTTTTTCTCATTTTTT
960600 TTCTTTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 4 0.14
16 10 0.36
17 14 0.50
ACGTcount: A:0.08, C:0.18, G:0.00, T:0.73
Consensus pattern (17 bp):
CTTTTTTCTCATTTTTT
Found at i:960611 original size:10 final size:9
Alignment explanation
Indices: 960577--960610 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
960567 CATTTTCTCA
960577 TTTTTTCTT
1 TTTTTTCTT
*
960586 TTTTCTCATT
1 TTTTTTC-TT
960596 TTTTTTCTT
1 TTTTTTCTT
960605 TTTTTT
1 TTTTTT
960611 TTCATCATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:964721 original size:117 final size:117
Alignment explanation
Indices: 964524--964922 Score: 556
Period size: 117 Copynumber: 3.4 Consensus size: 117
964514 TCTTGTGTAG
*
964524 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTG-AAATTTATTTTTTAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGAAAATTTATTTTTAAGGAAAAT
* *
964588 TGATACTTTAAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTGATTTTCAA
65 TGATACTTTCAACTTTTCCCCAAAAATATTTTTTTAGAAATTTTGATTTTCAA
964641 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAATT
* *
964706 GATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-A-TTTCAAA
66 GATACTTTCAACTTTTCCCCAAAAATATTTTTTTAGAAATTTTGATTTTC-AA
*
964757 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAATCCCTTTTTTTTTTTTTGAAAATTTATTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAA---------TATTTTTTGAAAATTTATTTTT
* * *
964821 AAGGAAAATGGATACTTTCAACTTTTCCCTAAAAATA-TTTTTCAGAAATTTTGATTTTCAA
56 AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTAGAAATTTTGATTTTCAA
* *
964882 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTT
964923 TTGGAACTTT
Statistics
Matches: 254, Mismatches: 13, Indels: 31
0.85 0.04 0.10
Matches are distributed among these distances:
115 7 0.03
116 46 0.18
117 96 0.38
124 12 0.05
125 87 0.34
126 6 0.02
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAATT
GATACTTTCAACTTTTCCCCAAAAATATTTTTTTAGAAATTTTGATTTTCAA
Found at i:964739 original size:59 final size:59
Alignment explanation
Indices: 964524--964925 Score: 526
Period size: 59 Copynumber: 6.7 Consensus size: 59
964514 TCTTGTGTAG
* *
964524 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTG-AAATTTATTTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
* * * *
964581 GGAAAATTGATACTTTAAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-ATTTTTAA
*
964641 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA--TTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
**
964698 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTCAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
* *
964757 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTTTTTTTTGAAAATTTATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-------TATTTTTTTTGAAAATTTATTTTTA
964822 A
59 A
* * ** * *
964823 GGAAAATGGATACTTTCAACTTTTCCCTAAAAATA-TTTTTCAGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTT-ATTTTTAA
*
964882 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTG
964926 GAACTTTTGA
Statistics
Matches: 300, Mismatches: 31, Indels: 25
0.84 0.09 0.07
Matches are distributed among these distances:
57 74 0.25
58 31 0.10
59 97 0.32
60 45 0.15
66 53 0.18
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAATTTATTTTTAA
Found at i:964815 original size:66 final size:66
Alignment explanation
Indices: 964733--964856 Score: 205
Period size: 66 Copynumber: 1.9 Consensus size: 66
964723 CCCAAAAATA
*
964733 TTTTTTTTGAAAATTTATTTCAAAGGAAAATTGATACTTTCAACTTTT-CCTCAAAAATCCCTTT
1 TTTTTTTTGAAAATTTATTTCAAAGGAAAATGGATACTTTCAACTTTTCCCT-AAAAATCCCTTT
964797 TT
65 TT
**
964799 TTTTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAAT
1 TTTTTTTTGAAAATTTATTTCAAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAAT
964857 ATTTTTCAGA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
66 51 0.94
67 3 0.06
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (66 bp):
TTTTTTTTGAAAATTTATTTCAAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAATCCCTTTT
T
Found at i:964835 original size:125 final size:125
Alignment explanation
Indices: 964676--964915 Score: 385
Period size: 125 Copynumber: 1.9 Consensus size: 125
964666 CCTAAAAATA
* **
964676 TTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATA-TTTTTCA
*
964741 GAAAATTT-A-TTTCAAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTT
65 GAAAATTTGATTTTC-AAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTTTTT
*
964801 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCTAAAAATATTTTTCAG
1 TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTCAG
* *
964866 AAATTTTGATTTTCAAGGAAGATTGATACTTTCAACTTTTCCCCAAAAAT
66 AAAATTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAAT
964916 ATTTTTTTTG
Statistics
Matches: 106, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
124 12 0.11
125 90 0.85
126 4 0.04
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (125 bp):
TTTTTTGAAAATTTATTTTTAAGGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTCAG
AAAATTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCCTTTTTTT
Found at i:964978 original size:16 final size:16
Alignment explanation
Indices: 964949--965026 Score: 66
Period size: 17 Copynumber: 4.6 Consensus size: 16
964939 TTATTTAAAG
964949 AAAATAGAATAATAAAAA
1 AAAATA-AA-AATAAAAA
964967 AAAATAAAAATAAAAA
1 AAAATAAAAATAAAAA
** * *
964983 TGAAGAAAAGTAAAACA
1 AAAATAAAAATAAAA-A
*
965000 AAAATAAAAATAAGATA
1 AAAATAAAAATAA-AAA
*
965017 AAGATAAAAA
1 AAAATAAAAA
965027 AATATTAAAT
Statistics
Matches: 48, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
16 19 0.40
17 22 0.46
18 7 0.15
ACGTcount: A:0.77, C:0.01, G:0.08, T:0.14
Consensus pattern (16 bp):
AAAATAAAAATAAAAA
Found at i:964997 original size:27 final size:28
Alignment explanation
Indices: 964967--965025 Score: 86
Period size: 27 Copynumber: 2.1 Consensus size: 28
964957 ATAATAAAAA
*
964967 AAAATAAAAATAAAAATGAAGA-AAAG-T
1 AAAACAAAAATAAAAAT-AAGATAAAGAT
964994 AAAACAAAAATAAAAATAAGATAAAGAT
1 AAAACAAAAATAAAAATAAGATAAAGAT
965022 AAAA
1 AAAA
965026 AAATATTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 4 0.14
27 20 0.69
28 5 0.17
ACGTcount: A:0.76, C:0.02, G:0.08, T:0.14
Consensus pattern (28 bp):
AAAACAAAAATAAAAATAAGATAAAGAT
Found at i:965056 original size:4 final size:4
Alignment explanation
Indices: 965049--965104 Score: 51
Period size: 4 Copynumber: 13.8 Consensus size: 4
965039 AACCTAATCT
* * *
965049 AATA AATA TAA-A AACA AATAA AATA AACA AATA AATA AACA AATA AATA
1 AATA AATA -AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AATA
*
965098 AAAA AAT
1 AATA AAT
965105 TCAAAAAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
3 2 0.05
4 34 0.81
5 6 0.14
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (4 bp):
AATA
Found at i:965084 original size:12 final size:12
Alignment explanation
Indices: 965060--965104 Score: 72
Period size: 12 Copynumber: 3.7 Consensus size: 12
965050 ATAAATATAA
965060 AAACAAATAAAAT
1 AAACAAAT-AAAT
965073 AAACAAATAAAT
1 AAACAAATAAAT
965085 AAACAAATAAAT
1 AAACAAATAAAT
*
965097 AAAAAAAT
1 AAACAAAT
965105 TCAAAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
12 23 0.74
13 8 0.26
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.16
Consensus pattern (12 bp):
AAACAAATAAAT
Found at i:965988 original size:26 final size:27
Alignment explanation
Indices: 965959--966069 Score: 88
Period size: 26 Copynumber: 4.2 Consensus size: 27
965949 TAGAAAAGAT
* *
965959 AATAAAAAAATATTATAGGA-TAAAAA
1 AATAAAAAAATAATATAGAATTAAAAA
* *
965985 AATAAAAAAATAATATATAATTAAATA
1 AATAAAAAAATAATATAGAATTAAAAA
* * *
966012 AATAAAAATACAA-ATA-AA-TAAAAT
1 AATAAAAAAATAATATAGAATTAAAAA
**
966036 AATAAAAAAAT-ATATATTATTAATAATA
1 AATAAAAAAATAATATAGAATTAA-AA-A
966064 AATAAA
1 AATAAA
966070 TAATAAATAC
Statistics
Matches: 67, Mismatches: 12, Indels: 10
0.75 0.13 0.11
Matches are distributed among these distances:
23 1 0.01
24 16 0.24
25 3 0.04
26 23 0.34
27 18 0.27
28 6 0.09
ACGTcount: A:0.70, C:0.01, G:0.02, T:0.27
Consensus pattern (27 bp):
AATAAAAAAATAATATAGAATTAAAAA
Found at i:966015 original size:4 final size:4
Alignment explanation
Indices: 965978--966078 Score: 59
Period size: 4 Copynumber: 25.8 Consensus size: 4
965968 ATATTATAGG
* * * * *
965978 ATAA AAAA ATAA AAAA AT-A ATAT ATAA TTAA ATAA ATAA A-AA TACAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA -ATAA
* * * *
966025 ATAA ATAA A-ATA ATAA AAAA ATAT ATATT ATTA AT-A ATAA ATAA AT-A
1 ATAA ATAA ATA-A ATAA ATAA ATAA ATA-A ATAA ATAA ATAA ATAA ATAA
966072 ATAA ATA
1 ATAA ATA
966079 CATAGGATAT
Statistics
Matches: 75, Mismatches: 14, Indels: 16
0.71 0.13 0.15
Matches are distributed among these distances:
3 12 0.16
4 57 0.76
5 6 0.08
ACGTcount: A:0.71, C:0.01, G:0.00, T:0.28
Consensus pattern (4 bp):
ATAA
Found at i:966034 original size:51 final size:56
Alignment explanation
Indices: 965978--966080 Score: 153
Period size: 51 Copynumber: 1.9 Consensus size: 56
965968 ATATTATAGG
965978 ATAAAAAAATAAAAAAATA-ATA-TA-TAAT-TAAATAAATAA-AAATACAAATAA
1 ATAAAAAAATAAAAAAATATATATTATTAATATAAATAAATAATAAATACAAATAA
*
966029 ATAAAATAATAAAAAAATATATATTATTAATAATAAATAAATAATAAATACA
1 ATAAAAAAATAAAAAAATATATATTATTAAT-ATAAATAAATAATAAATACA
966081 TAGGATATAC
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
51 18 0.40
52 3 0.07
53 2 0.04
54 4 0.09
56 11 0.24
57 7 0.16
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (56 bp):
ATAAAAAAATAAAAAAATATATATTATTAATATAAATAAATAATAAATACAAATAA
Found at i:966060 original size:24 final size:24
Alignment explanation
Indices: 965957--966071 Score: 81
Period size: 24 Copynumber: 4.6 Consensus size: 24
965947 ATTAGAAAAG
**
965957 ATAATAAAAAAATATTATAGGATAAA
1 ATAATAAAAAAATA-TATATTAT-AA
* *
965983 AAAATAAAAAAATAATATATAATTAA
1 ATAATAAAAAAAT-ATATATTA-TAA
* *
966009 ATAAATAAAAATACAAATA-AATA-AA
1 AT-AATAAAAA-A-ATATATATTATAA
*
966034 ATAATAAAAAAATATATATTATTA
1 ATAATAAAAAAATATATATTATAA
*
966058 ATAATAAATAAATA
1 ATAATAAAAAAATA
966072 ATAAATACAT
Statistics
Matches: 71, Mismatches: 11, Indels: 16
0.72 0.11 0.16
Matches are distributed among these distances:
22 4 0.06
23 4 0.06
24 22 0.31
25 4 0.06
26 20 0.28
27 12 0.17
28 4 0.06
29 1 0.01
ACGTcount: A:0.70, C:0.01, G:0.02, T:0.28
Consensus pattern (24 bp):
ATAATAAAAAAATATATATTATAA
Found at i:966108 original size:12 final size:12
Alignment explanation
Indices: 966091--966125 Score: 56
Period size: 11 Copynumber: 3.1 Consensus size: 12
966081 TAGGATATAC
966091 ATAAAATATAAA
1 ATAAAATATAAA
966103 ATAAAATA-AAA
1 ATAAAATATAAA
966114 ATAAAA-ATAAA
1 ATAAAATATAAA
966125 A
1 A
966126 ATGACAAAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 13 0.59
12 8 0.36
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (12 bp):
ATAAAATATAAA
Found at i:966116 original size:6 final size:6
Alignment explanation
Indices: 966093--966127 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
966083 GGATATACAT
966093 AAAATA TAAAAT- AAAATA AAAATA AAAATA AAAAT
1 AAAATA -AAAATA AAAATA AAAATA AAAATA AAAAT
966128 GACAAAGATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
5 5 0.19
6 17 0.63
7 5 0.19
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:966497 original size:26 final size:26
Alignment explanation
Indices: 966461--966513 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
966451 GTTGACTTAG
966461 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
966487 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
966513 G
1 G
966514 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:968919 original size:26 final size:26
Alignment explanation
Indices: 968890--968940 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
968880 TGACTTAGGA
968890 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
968916 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
968941 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:970113 original size:868 final size:874
Alignment explanation
Indices: 967524--978778 Score: 7728
Period size: 867 Copynumber: 12.5 Consensus size: 874
967514 TGAAATTGGG
* *
967524 ACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
967589 AAGTTTGGGGCCGAAACTCCTTCCGAAAAAATTTTAGAAAATCTCGAACCGTAAAAAGTTTTGAA
66 AAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
*
967654 AATCGTGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
130 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
967719 TGTATAAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGCCGAAACCC
195 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * * * *
967784 ACCTACTACCCAATCGACCCACGGCTTGCGCATCGCGTCTCTCTGGCCGGCGTA---G--TGCCC
260 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTACCTGCCCGCCC
* * * * * *
967844 GCCCGCTCATTTCATCAGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGA
325 GCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * * * * *
967909 CTGA-GGTATACAGCAGCAGGATCAGCAGCATGTAGAGGGGGACCCAACCGATCCTCGGGCTTGC
390 CCGAGGGT-TGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCC-CCGGCTTGC
* * * * * *
967973 GCATCCCGCCCCTCTTGCCGGCTGAGTGCCCACACGCTCG-CTTCGCGGGTTGACTTAGGCATAC
453 GCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTCGTGGGTTGACTTAGGCATAC
** * * * ** *
968037 AAAGTTCATTCCCAGTCTAAG-A-CC-G-GACCGGACCGAGGGTTGCGGCAGCGGATGCTGGGCT
518 GGAGTTCATTCCCAGTCTAAGTATCCAGAGATCGGATCGAGGGTTACGGCAGCACATGCTGGGTT
* ** * * * *
968098 CGAGCATGTGCTGGTGCCGTATTTTTCTTTTTCGGGGCGCCATCGTCAGAGCATCGCCGGAGAAC
583 CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
* * *
968163 CTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGGGGTGTGCGCACATGATGTG
648 CTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCC---GGGGGGTGTGCGCACATGATGTG
* *
968228 CGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
710 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
968293 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
775 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
968358 GGGGACAGTTTTTTCAAATGATCACAAAATCTTGT
840 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
968393 ACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGACCACGTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * *
968458 AAGTTTGGGCCCAAAAATCCTTTTG-AAAAATTTTAAAAAATCCCAAAACCGTAAAAAGTTTTGA
66 AAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCCC-GAACCGTAAAAAGTTTTGA
*
968522 AAATTGTGAAAAATAGAAAACGAGT-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
129 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* ** * *
968586 TTGTATGAATTTAAAAGCCAT-AAAATGTAATTGGCATGAAGAAATATGAAGGTGTGCCTAAACC
194 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * *
968650 CACCTACCACCCTATCAATCCACGGCTTGCGCATCCTGTCTCTCTGGCCG-CGTA-GTG--C-CC
259 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTACCTGCCCGCC
* * * *
968710 CGCCCGCTCATTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-G
324 CGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * * * * * *
968774 ACCGAAGGTTACGGTAGTAGGATCGGCAGCACG-AGA-GAGGACCCG-CCGATCCCCGACTT--G
389 ACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCG
* * *
968834 CATCCTG---CTCTGGCCGACTGAGCGCCCGTACGCTC-TTTTCGTGGGTTGACTTAGGAATACG
454 CATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTCGTGGGTTGACTTAGGCATACG
968895 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGT
519 GAGTTCATTCCCAG--T---C-TA---AG-T-A-T-CCAG----AGATCGGAT-----CGAGGGT
* * * * *
968960 TACGGTAGCACATGCTGGGCAT-GGGCATGTGCTGGTCCCGCATTTCTCTTCGTCGGGGCACCAT
562 TACGGCAGCACATGCTGGG-TTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
** * * **
969024 CATCGGAGCATCG-CTGGAGAACCTGATC-GACGGCATTGGGGTTCTGACGATCAAGGGGGCCGG
626 CGCCGGAGCATCGTC-GGAGAACCTGACCAG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGG
* * *
969087 GGGATGTGCGCACATGATGTGTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
689 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
969152 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
754 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * ** *
969217 AGCCATTAAAATGTCTAAAACAGGGACACTTTTTTCAAATGGTCAAAAAATCTTGT
819 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
969273 ACACTTCGAGTTTTTAGCTG-ATTTTTTTATGCATGCCAACAAAAATAAAAGGATCACGTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* ** **
969337 AAGTTTGGGGCCAAAACTTTCTTCGAAAAAATTTTAAAAAATTTCGAACCGTAAAAAGTTTCAAA
66 AAGTTTGGGGCCAAAAC-TCCTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
* * *
969402 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTACACGTGAAGGCTTAAGGAACCAT
130 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
969467 TGTATGAATTTACAAGCCATAAAACTGGCATTGGCATGCAGAAATATGAAGATGTGTCTAAACCA
195 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
*
969532 ACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGACGTA-CTGCCCGCCC
260 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTACCTGCCCGCCC
* * *
969596 GCCCGCCCG-TTCATC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGA
325 GCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* *
969659 CTGAGGGTTGCGGCAGCAGGATCGGCAGCATGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
390 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * *
969724 ATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCATGCTCGTTTTCGCGGGTTGACTTAGGCATACGG
455 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTCGTGGGTTGACTTAGGCATACGG
*
969789 AGTTCATTCCCAGTCTAAG-AT-C-G-GATCGGATCGAGGGTTATGGCAGCACATGCTGGGTTCG
520 AGTTCATTCCCAGTCTAAGTATCCAGAGATCGGATCGAGGGTTACGGCAGCACATGCTGGGTTCG
* ** * * *
969850 AGCATGTGCTGGTGCCACA-TTTTCTTCACCGGGGTACCATCACCGGAGCATCGTCGGAGAACTT
585 AGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
*** * * * *
969914 GA-CAGCAAAATTGGGGTTACAACAATCGGGGGGGCCGAGGGGGGGTGTGCGCACATGATGTGTG
650 GACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCC---GGGGGGTGTGCGCACATGATGTGCG
* *
969978 ATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAAC
712 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
970043 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAATGG
777 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
970108 GGACACTCTTTTCAAATGATCACAAAATCTTGT
842 GGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
970141 ACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
970206 AAGTTTGGGGCCAAAAATCCTTCCAAAGAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAC
66 AAGTTTGGGGCCAAAACTCCTTCGAAA-AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
970271 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
130 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
970336 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
195 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * *
970401 ACCTACCACCCTATCGATCCACGGCTTGCGCATCACGTCCCTCTGGCCTGCGTAATGTCCGCCCG
260 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG--T-CG--ACGT--ACCTG
* * *
970466 CCCGCCTGCCCGGCCGCTCGTTTCGTCGGTCGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
318 CCCGCCCGCCC-G-C-C-CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * ** **
970531 ATCAGACCGAACCAAGGGTTGCGGTAATA-GATCGGCAGCACACAGAGGGGGA-CCGATCGATCC
379 ATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCC
* * * * *
970594 CC-GCTTGCGTGCATTCTGCCCCTCTAGCCGACT-AG-GCTGCCACACGCTTCG-TTTCATGGGT
444 CCGGCTTGC--GCATCCTGCCCCTCTGGCCGGCTGAGCGC--CCGCACGC-TCGTTTTCGTGGGT
970655 TGACTTAGGCATACGCAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
504 TGACTTAGGCATACG--GAGTTCATTCCCAG--T---C-TA---AG-T-A-T-CCAG----AGAT
** * *
970720 CGGATCGGACCGAAGGTTGTGGCAGCACATGTTGGGCTT-G-GCATGTGCTAGTGCCGCATTTTT
550 CGGATC-GA--G--GGTTACGGCAGCACATGCTGGG-TTCGAGCATGTGCTGGTGCCGCATTTTT
** * *
970783 CTTCACCGGGGCACCATTGCCGAAGCATCGTCGGAGAACCTGACCA-CGGCATTGGGGTTCCGAC
609 CTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCGAC
* *
970847 GATCGGAGGGGCC-GGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTGGCCCCTATAT
674 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
970910 TGGGCCCGTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTAT
739 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
970974 AGGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAA
804 AGG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
971039 TTCTTGT
868 ATCTTGT
* * *
971046 ACACTTCGAGTTTTAAGCTGAATTTTTTTGTGCATGCCAAC-AAAATACGAGGATCTCGTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
** * * * *
971110 AAGTTTGCAGCCAAAACTCCTTCTGAAAAAATTTCAAAAAATGCCGAATCG-CAAAAGTTTTGAA
66 AAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
*
971174 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCAT
130 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * *
971239 TGTATGAATTTACAATCCATAAAAATGGCATTGGCACGTAGAAACATGAAGATGTGCCTAAACCA
195 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
*
971304 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGTCGACGTAGTGCCCGCCCG
260 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA-----------
* *
971369 CCCGCCCGCCCGCCCGCTCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTC
314 CCTGCCCGCCCGCCCG--CC--CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
971434 TAAGATCAGACCAGACCGAAGGTTGCGGCAGCAGGATTGGTAGCACGTAGAGGGGGACTCGATCG
375 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCG
* * * * * * *
971499 ATCCCCGGCTTGTGCATTCTGCCCCTCTGGTCGACTGAGCGCCCTCACGCTTGTTTTATGGGTTG
440 ATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTT-T-CG-TG
*
971564 ACTTAGGCATGCAGAGTTCATTCCCAGTCTCAGCATACGGAGTTCATTCCCAGTCTGAGGATACA
501 -----GG--T--TGA---C-TT---AG-----GCATACGGAGTTCATTCCCAGTC------T--A
* * * *
971629 GAGATCATTCCCAGTCTAAGATCGGACTAGATCGAAGGTTGCGGCAGCACATGCTGGGCTCGGGC
537 -AG-T-A-T-CCAG----AGATC-G----GATCGAGGGTTACGGCAGCACATGCTGGGTTCGAGC
* * *
971694 ATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
588 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * * * *
971759 C-GACGACATT-GGGTTTCGACGATCGAGGGGGCCAGGGGGTGTGCACACATGATGTGCGATGGG
653 CAG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
971822 TGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
717 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
971887 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACA
782 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
971952 CTTTTTTCAAATGGTTACAAAATCTTGT
847 CTTTTTTCAAATGGTCACAAAATCTTGT
971980 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG-CTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * ** *
972044 AAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAG-GATCAA
66 AAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
* * *
972108 ATATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCA
130 A-ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
** *** *
972173 TAATATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGGTGTGCCTAAACC
194 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* ** *
972238 CACCTACCACCCTATCGATTCACGGCTTGCTTATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCC
259 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA---CCTGCCC
*
972303 GCCCGCCCGTCCGCTGCTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAG
321 GCCCGCCCG--C-C--C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * * *
972368 ATCGGATAGGACCGAGTGTTGCGACAGCAGGATCAGCAACACGTAAAGGGGGACCTGATCGATCC
379 ATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCC
* * * * * *
972433 TCGGCTTGCACATCCTGCCCCTTTGGCTGGCTGAGCGCTCGCACGCTCGTTTT-GTGAGTTGACT
444 CCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTCGTGGGTTGACT
*
972497 TACGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGATTG
509 TAGGCATACGGAGTTCATTCCCAG--T---C---TA-AG-T-A-T-CCAG----AGATCGGA-T-
* * * * * * *
972562 GACCGAAGGTTGCGGTAGTACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCG
555 ---CGAGGGTTACGGCAGCACATGCTGGGTTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* **
972627 GGGCACCATCGCCGGAGCATCATCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCAGGG
617 GGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATC-GGG
* * *
972692 GGGGCCGGGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCG
681 GGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
972757 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TAAAGAGAATTTGATATTTTACAGG-TT
745 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
972820 --TG-C--T-G-C----------CT----T---G-----------AAATGGTCACAAAATCTTGT
810 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
972850 ACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* ** * *
972915 AAGTTTGTGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCATAAAAAGTTTCGAA
66 AAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
* * * *
972980 TATCATGAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
130 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * ** *
973045 TGTATGAATTTACGAGCAATAAAAATAGCATTGGCACACAGAAATATGAAGATGTGCCTTAACCC
195 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * *
973110 ACCAATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGACGTAGTGCCTGCCCG
260 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA---CCTGCCCG
* * * *
973175 CCCACCCACTCGTTTCATCAGG-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
322 CCCGCCCGCCCGTTTCGTC-GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * * * * * *
973239 CAGACTGACGGTTACGGCGGCAGGATCGGTAGCACATAGAGGGGGACACGGTTGATCCCCGGCTT
386 CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTT
* * * * * * *
973304 GTGCATCCCGCCCCTCTAGTCGGCTGAACGCCTGTACGCTCG-TTTCGTGGGTTGACTTAGGCAT
451 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTCGTGGGTTGACTTAGGCAT
*
973368 ACGGAGCTCATTCCCAGTCTAAGCATACGAACTTCATTCCCAGTCTAAGATCGGATCAGATCGAG
516 ACGGAGTTCATTCCCAGTCT----A-A-G----T-A-T-CCAG----AGATC-G----GATCGAG
* * * * ** * ***
973433 GGTTACGGCAGTAGGATCGGTAGCATGCAGATTGACCCAGCCGAT-CCCCGGCTTG-CGCATCCC
559 GGTTACGGC---AGCA-C-AT-GC-TG--GGTT---CGAG-C-ATGTGCTGG--TGCCGCATTTT
* * * * * * * * *** * * *
973496 AC-CCCTCTGGCCGACTGAGCGCC--CGCA-CGGTCGTGTCATG-GGTTGACTTA--GGTATACG
608 TCTTCGTCGGGGC-AC-CATCGCCGGAGCATC-GTCG-G--A-GAACCTGAC-CAGCGGCAT-TG
* * ** * *** * * * * * *
973554 GAGTTCATTCCAGTCTAAGATCGGATCGGACCGAATGTTGCGGTAGCACATGCTGGGC-A-CGG-
664 G-G---GTTCC-G---ACGATCGG-GGGGGCCGGGGGGTG-TG-CGCACATGATGTGCGATGGGT
* * * * * * * * * * *
973616 GCAT-GTGCTGGTGCCGCATTTTTCTTTACCGGGGCACC-ATCGCTGGAGC-ATCGTCAGAGAAC
718 GC-TGGTACTTG-GCC-C--TTAT-ATT----GGCCCCCTATCCCT-CATCAAACCTC-GAGAAC
* * *** ** ** * **** * * *
973678 -CAGACCGACGGCATTG-GGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC-GCACATGATGTGC
771 TCACACC-CCCTTAAAGAGCATT-TGA-GAT----TTTAC---AGGTTTGCTGC-CA-G-T-AGC
* ** * * * * * ** ** * ** *
973740 GA-T-GGGTG-CTGCTACT-TGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
822 CATTAAAGTGTCTG-AAATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTGT
** *** *** * ** ** *
973798 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT-TGC-TGCCAGTAGCCATTA-AA-G
1 A--CACTTCGAGTT-TTTAGC---TGA-ATTTT----TTTGTGCATGCCAACA-AAAATACAAGG
* *** * * * * ** * * * *
973859 -T---GTCTA--AA--ATGGGGACACTTGATTCAAATGGTC-ACAAAATCTTGTACACT-TCGAG
54 ATCACGTCTACCAAGTTTGGGG-C-CAAAACTC--CT--TCGAAAAAATTTTAAAAAATCCCGAA
*** * *** ***** * * * * * *
973914 TTTTTAGCTGATTTTTTTTTTGCATGCCAACAAAAATACAA-GGGTCACGTC-TACCAAGTTTGG
113 CCGTAAAAAG-TTTTGAAAAT-CGTG--AA-AAATAGAAAACGAGT--CGTCTTGCC-A---T--
* * ** *** ** ** * * *
973977 GGCCAAAACTCCTTC-TGAAAAAGTTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAACCGTG
165 -G---AAACTTC-ACGTG---AAGGCTTAAGGGA-C-C--ATTGTATGAA-TTT-ACAAGCCAT-
** ** * * ** ***
974041 AAAAATAGAAAACGAGTCATCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
215 AAAAAT-GGCATTG-G-CA---TG-CA-GAAA--T-A--TGAA-G---ATGTG-CC--TAAACCC
** * * *** * * * * *** * ** * * *
974106 ATTTACAAGCC-AT--AAAAATGGTATTG-GTA-CGCAG-AAATAT-GAAGATGTGCCTAAACCC
260 ACCTACCACCCTATCGATCCACGG-CTTGCGCATC-CCGTCTCTCTGGTCGACGTACCT--GCCC
* ** * * *** * ** ***
974164 -ACCTACCACCC-TATCGATC-CACGACTT-GCGCA-ATC-CCG-TC--TCCCTAGTCGGCGTAG
321 GCCCGCCCGCCCGTTTCG-TCGGTTGGCTTAG-GCATA-CGGAGTTCATTCCC-AGTCTAAG-A-
** * * * * * *
974220 TGCCCACCCGCCCGTCGGCTCGTTTCGGCGGATTGCTTAGGCATACATAGTTCATTCACAGTCTA
380 T-CGGACCGGACCG-AGG---GTTGCGGC--A--GC--AGG-AT-C---G-GCA-GCAC-G--T-
** * * * * * * * * * * *****
974285 AGATCAGACTGGACCAAGGGTTGCG-GCAGCAGGATCG-GCAGCATGTCGAGGGGGACCCGG-TC
423 AG---AG-GGGGACC---CGAT-CGATC-CCCGGCTTGCGCATCCTGCCCCTCTGG--CCGGCT-
* *** * * * ** * * * *
974347 GATC-CCCG-ACTTGTGCATCCTGCCCCTC-TGGCTAG-CTGA-GCACCCGCACGCTCGTTTCGT
476 GAGCGCCCGCAC----GC-T-C-G-TTTTCGTGGGTTGACTTAGGCATACGGA-GTTC-ATTC-C
** * * * * * * *
974407 GGGTTGACTTAAGCATACAGAGTTC--ATTCCCA--GTCTAAGATCAG-ACCA-GACCGAGGGTT
530 CAG-T--C-TAAGTATCCAGAGATCGGA-T-CGAGGGT-TACG-GCAGCA-CATG--C-TGGGTT
*
974466 GCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG
583 -C-G-AG--CA---T-G-----------TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* ** * * *
974531 TCGGAGCATCGTCGGAGAACCTGACTGGTGGCATTGGGGTTCCGACGATCAGGGGGGCCAGGGGG
628 CCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
* *
974596 TGTGCACACATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
693 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
974661 AAACCTCAAGAACTCACACCCCCTTAAAGAGCATGTGAGATTTTACAAGTTTGCTGCCAGTAGTC
758 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
974726 ATTAAAGTATCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGT
823 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * *
974778 ACACTTCAAATTTTTAGCTGATTTTTTTTGTGCATTCCAACAAAAATACAAGGATCACGTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* **
974843 AAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAAAAT-CCGAAACCGTAAAAAGTTTCAA
66 AAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCG-AACCGTAAAAAGTTTTGA
*
974907 AAATCGTCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
129 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* ** *
974972 TTGTATGAATTTACAAGCCATAAAAATGGCATTAGCACACAGAAATATGAAGATGTGCCTAACCC
194 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * * *
975037 CACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTAGCATAGTGCCCGCCC
259 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-TCG-A-CGTACCTGCCC
* * * * * **
975102 ACCCGCCCGCTGCTCGTTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCTCAGTCGAAGATAA
321 GCCCGCCCGC--C-CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * *
975167 GACCGAACTGAGGGTTGCGGCAGTAGGATCGACAGCACGTAGAGGAGGACCCGATCGATCCCTGG
383 GACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGG
* * *
975232 CTTACGCATCC-GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-ATTTCGTGGTTTGACTTAGG
448 CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTCGTGGGTTGACTTAGG
*
975295 CATACGGAGTTCATTCCCAGTCTAAGCATACAGATTTCATTCCCAGTCTAAGATGGGACCGGACC
513 CATACGGAGTTCATTCCCAG--T---C-TA-AG---T-A-T-CCAG----AGAT-----CGGATC
* * * * * * *
975360 GAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGAGGC
556 GAGGGTTACGGCAGCACATGCTGGGTTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* * * * * * *
975425 ACCATCACCGGAGCATCGTCGGAGAACCTAATCGGCGGCATTGGTGTTCCAACGTTCGGGGGGGC
621 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGC
*
975490 CGGGGGGGCTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTA
686 C-GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
975555 TCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTG
749 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
975620 CCAATAGCCATTAAAGTGTCAT-AAATGGGGACACTTTTTTCAAATGGTCACAAAATTTTGT
814 CCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
975681 ACACTTCGATTTTTTAG-TGAATTTTTTTGTGCATGCTAATAAAAATACAAGGATCACGTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
** * ***
975745 AAGTTCAGGGCCAAATCTTGTACACTTCGAGTTTTTACCTGATTGTTTTTTGCATGCCAACAAAA
66 AAGTTTGGGGCCAAAAC---T-C-CTTCGA------A----A---AAATTT---T----A-AAAA
* ** ***
975810 ATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAGCTCCTTCCGAAAAAGTTTTAAAAAATCTC
105 AT-C------C-CG--AACC--G--T----AAAAAG-T--TTTGAAAA---------------T-
* *
975875 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGTCATGAAACTTCAC
133 ----CGT-----G-----AAAA--AT--A-----GAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
975940 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGTACGCAGAAAT
175 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
*
976005 ATGAAGA--TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCCCTG
240 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* ** **
976068 G-C--CGTA-GTGCCCGCCCGCCGTCGGTCGTTTCGTCGGTTGGCTTAGGCATACATAGTTCATT
305 GTCGACGTACCTGCCCGCCCGCC--CGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * *
976129 CACAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGACAGCATGCAGATGGGGAC
368 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGAC
* * ** *
976194 CC-AGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTAGCTGAACGCCCGCACGCTCG-TTT
433 CCGA-TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTT
**
976257 CGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCT
497 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T--A-AG-T-A-T-CCAG---
* * * * * *
976322 AAGATCGGAACGGATTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTTGGTGCCCGT
546 -AGAT-----CGGATCGAGGGTTACGGCAGCACATGCTGGGTTCGAGCATGTG-CTGGTG-CCGC
* ** *
976387 ATTTTTCTTCGTC-GGGCACC-TCACCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGT
603 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGT
* * **
976450 TCTGACGATCGGGGGTGCCGGGGGGTGGTGTGCGCACATGATGTATGATGGGTGCTGGTACTTGG
668 TCCGACGATCGGGGGGGCC--GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * * *
976515 CCCTTATATTGGCACCCTATCCCTCATCAAACCTTGAGAACT-TCACCCCCTTAAAAAGCATTTG
730 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
976579 AGA-TTTACAGGTTTTGCTG-CAG-AGCAATTAAAGTGTCTGAAATGGGGA-ACTTTTTTCAAAT
795 AGATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
976640 GGTCACAAAATCTTGT
859 GGTCACAAAATCTTGT
* * *
976656 ACACTTCGAGTTTTTAGCAGAA--TTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACT
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* **
976719 AAGTTTGGGGCCAAAACTGCTTTCGAAAAAATTTT-AAAAATCCCGAACCGTAAAAAGTTTCAAA
66 AAGTTTGGGGCCAAAACT-CCTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
* * * * *
976783 AATCGTGAAAAATAAAAAATGAGTCGTCTTGTCATGAAACTTCATGTGAAGGTTTAAGGGACCAT
130 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
** * *
976848 TGTATGAATTTACGGGCCATAAAAATGGCATTGGC-TCGTAGAAATATAAAGATGTGCCTAAACC
195 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACC
* * * * * * *
976912 TAGCTACCATCCC-ATC--TCTC-TGGC-TGACG--T--AGT-GC-C----C-AC---CC-ACTC
259 CACCTACCA-CCCTATCGATC-CACGGCTTG-CGCATCCCGTCTCTCTGGTCGACGTACCTGCCC
* * *
976957 GCCCG-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCGGAC
321 GCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * * * * * *
977021 CGAACCAAGAGGATTCCGGTAGCAAGATTGACAGCATGCAGAGGGGGACCCGATCGATCCCTGGC
386 CGGACC--GAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGC
** * * *
977086 TTGCGCATCCCACCCGTCTGGCCGACTGAGCGTCCGCACGCTCG-TTTCGTGGGTTGACTTAGGC
449 TTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTCGTGGGTTGACTTAGGC
* * *
977150 ATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-GATCGGACCGAGGGTTACGACAGCACATGCTG
514 ATACGGAGTTCATTCCCAGTCTAAGTATCCAGAGATCGGATCGAGGGTTACGGCAGCACATGCT-
* ** ** * * *
977211 GGGTT-G-GCCATGTGCTGGTACCATATTTTTCTTCACCGGGGCACCATCACCAGAGCATCATCG
578 GGGTTCGAG-CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCG
* ** * * * *
977274 GAGAACTTGACTGGCGGCATTGGCGTTTCGACGATCGGGGTGGTCGGGGCGGTGTGCGCACATGA
642 GAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGA
* * * ** *
977339 TATGCAATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCATTCATCATACCTTC-AGAA
706 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAA
* * *
977403 CTCACACCCTCTTAAAGAGCATTTGAGATTTTATAGG-TTGTTGCCAGTAGCCATTAAAGTGTCT
770 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
977467 GAAATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGT
835 GAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGT
*
977508 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * **
977573 AAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTTAAAAAATCCCAAACCAT-AAAAGTTTCAAA
66 AAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
*
977636 AATCGTGAATAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
130 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
***
977701 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC
195 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
** * *
977766 ACCTACCACCCTATCGATCCACAACTTGCGCATCCCGTCTCTCTGGCCGACGTGGTGCTCGCTCG
260 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGAC---GT--AC-CT-G
* * ** * * *
977831 CACGCCCACCCGCTTGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCA
318 CCCGCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * * *
977896 GACCAGACTGAGGGTTACGGCAGTAGGATCAGCAGCACATAGAGGGGGACCCGGTCGATCCCCAG
383 GACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGG
* * *
977961 CTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTT-GTGGGTTCACTTAGG
448 CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTCGTGGGTTGACTTAGG
* * * * * ** *
978025 CATACAGAGTTCATTCCCAGTCTAAG-ATCC-GA-CT-AGACCGAGGGTTGCGATAGCACGTGCT
513 CATACGGAGTTCATTCCCAGTCTAAGTATCCAGAGATCGGATCGAGGGTTACGGCAGCACATGCT
* * * ** *
978086 GGGCTCGGGCACGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCAT-GCCGGAGCATCGCCGG
578 GGGTTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGG
* * * *
978150 AGAACTTGACCGGCGGAATTGGGGTTCCGACGATC------G--GGGGGGTGTGCACACATGATG
643 AGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
978207 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
708 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** * * *
978272 ACATTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCTACTAGCCATTAAAGTGTCTGAA
773 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
978337 AGGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
838 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * * **
978374 ACACTTTGAGTTTTTAGCTAAATTTTGTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTAAT
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * ** **
978439 AAGTTTGGGCCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAA
66 AAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
* * * * *
978504 AATCATGAAAAATAAAAAATGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTCAAGGGACCAT
130 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
978569 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGA-AAATATGAAGATGTGCCTAAACCC
195 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * *
978633 ACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGTCCG
260 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA----CC-T--G
* * * * *
978698 CCTGCCTGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
318 CCCGCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
*
978763 GACTGGACCGAGGGTT
383 GACCGGACCGAGGGTT
978779 ATGGCAGCGC
Statistics
Matches: 8287, Mismatches: 1361, Indels: 1478
0.74 0.12 0.13
Matches are distributed among these distances:
848 92 0.01
849 38 0.00
850 115 0.01
851 6 0.00
852 51 0.01
853 151 0.02
854 73 0.01
855 8 0.00
856 3 0.00
857 58 0.01
859 4 0.00
860 11 0.00
861 3 0.00
862 7 0.00
863 13 0.00
864 197 0.02
865 33 0.00
866 282 0.03
867 397 0.05
868 389 0.05
869 382 0.05
870 80 0.01
871 241 0.03
872 15 0.00
873 3 0.00
874 61 0.01
875 48 0.01
876 308 0.04
877 50 0.01
878 74 0.01
879 111 0.01
880 287 0.03
881 104 0.01
882 82 0.01
883 206 0.02
884 58 0.01
885 14 0.00
886 17 0.00
887 28 0.00
888 112 0.01
889 20 0.00
890 25 0.00
891 6 0.00
892 24 0.00
893 41 0.00
894 14 0.00
895 19 0.00
896 5 0.00
897 7 0.00
898 4 0.00
899 4 0.00
900 5 0.00
901 86 0.01
902 64 0.01
903 363 0.04
904 233 0.03
905 189 0.02
906 76 0.01
907 189 0.02
908 58 0.01
909 35 0.00
910 97 0.01
911 4 0.00
912 16 0.00
913 8 0.00
914 16 0.00
915 7 0.00
916 5 0.00
917 2 0.00
918 10 0.00
919 7 0.00
920 2 0.00
921 6 0.00
922 6 0.00
923 8 0.00
924 5 0.00
925 8 0.00
926 6 0.00
927 33 0.00
928 6 0.00
929 6 0.00
930 138 0.02
931 60 0.01
932 91 0.01
933 44 0.01
934 220 0.03
935 231 0.03
936 10 0.00
937 5 0.00
938 9 0.00
939 18 0.00
940 7 0.00
941 4 0.00
942 6 0.00
943 16 0.00
944 8 0.00
945 11 0.00
946 10 0.00
947 8 0.00
948 20 0.00
949 3 0.00
950 12 0.00
951 11 0.00
952 28 0.00
953 11 0.00
954 8 0.00
955 17 0.00
956 11 0.00
957 16 0.00
958 7 0.00
959 10 0.00
960 2 0.00
961 1 0.00
962 8 0.00
963 2 0.00
964 1 0.00
965 1 0.00
966 8 0.00
967 1 0.00
968 4 0.00
969 10 0.00
970 12 0.00
971 15 0.00
972 11 0.00
973 16 0.00
974 58 0.01
975 52 0.01
976 56 0.01
977 126 0.02
978 243 0.03
979 95 0.01
980 34 0.00
981 4 0.00
982 4 0.00
983 5 0.00
984 8 0.00
985 61 0.01
986 6 0.00
987 109 0.01
988 34 0.00
989 19 0.00
990 4 0.00
991 6 0.00
992 10 0.00
993 11 0.00
994 5 0.00
995 5 0.00
996 26 0.00
997 16 0.00
998 4 0.00
999 2 0.00
1000 10 0.00
1001 4 0.00
1002 12 0.00
1003 7 0.00
1004 15 0.00
1005 19 0.00
1006 4 0.00
1007 3 0.00
1008 2 0.00
1009 6 0.00
1012 9 0.00
1013 11 0.00
1014 10 0.00
1015 8 0.00
1016 31 0.00
1017 12 0.00
1018 7 0.00
1020 2 0.00
1021 1 0.00
1022 7 0.00
1023 9 0.00
1024 13 0.00
1025 8 0.00
1026 6 0.00
1027 9 0.00
1028 1 0.00
1029 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTACCTGCCCGCCCG
CCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
CGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA
TCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGTATCCAGAGATCGGATCGAGGGTTACGGCAGCACATGCTGGGTTCGA
GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
ACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGT
Found at i:970379 original size:869 final size:874
Alignment explanation
Indices: 967524--973390 Score: 6361
Period size: 869 Copynumber: 6.6 Consensus size: 874
967514 TGAAATTGGG
* *
967524 ACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
967589 AAGTTTGGGGCCGAAACTCCTTCCGAAAAAATTTTAGAAAATCTCGAACCGTAAAAAGTTTTGAA
66 AAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
*
967654 AATCGTGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
130 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
967719 TGTATAAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGCCGAAACCC
195 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * * * *
967784 ACCTACTACCCAATCGACCCACGGCTTGCGCATCGCGTCTCTCTGGCCGGCGTA---G--TGCCC
260 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTACCTGCCCGCCC
* * * * * *
967844 GCCCGCTCATTTCATCAGTTGGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGA
325 GCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * * * * *
967909 CTGA-GGTATACAGCAGCAGGATCAGCAGCATGTAGAGGGGGACCCAACCGATCCTCGGGCTTGC
390 CCGAGGGT-TGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCC-CCGGCTTGC
* * * * * *
967973 GCATCCCGCCCCTCTTGCCGGCTGAGTGCCCACACGCTCG-CTTCGCGGGTTGACTTAGGCATAC
453 GCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTCGTGGGTTGACTTAGGCATAC
** * * * ** *
968037 AAAGTTCATTCCCAGTCTAAG-A-CC-G-GACCGGACCGAGGGTTGCGGCAGCGGATGCTGGGCT
518 GGAGTTCATTCCCAGTCTAAGTATCCAGAGATCGGATCGAGGGTTACGGCAGCACATGCTGGGTT
* ** * * * *
968098 CGAGCATGTGCTGGTGCCGTATTTTTCTTTTTCGGGGCGCCATCGTCAGAGCATCGCCGGAGAAC
583 CGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
* * *
968163 CTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGGGGTGTGCGCACATGATGTG
648 CTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCC---GGGGGGTGTGCGCACATGATGTG
* *
968228 CGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
710 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
968293 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
775 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
968358 GGGGACAGTTTTTTCAAATGATCACAAAATCTTGT
840 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
968393 ACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGACCACGTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *** *
968458 AAGTTTGGGCCCAAAAATCCTTTTGAAAAATTTTAAAAAATCCCAAAACCGTAAAAAGTTTTGAA
66 AAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCC-GAACCGTAAAAAGTTTTGAA
*
968523 AATTGTGAAAAATAGAAAACGAGT-GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
130 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* ** * *
968587 TGTATGAATTTAAAAGCCAT-AAAATGTAATTGGCATGAAGAAATATGAAGGTGTGCCTAAACCC
195 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * *
968651 ACCTACCACCCTATCAATCCACGGCTTGCGCATCCTGTCTCTCTGGCCG-CGTA-GTG--C-CCC
260 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTACCTGCCCGCCC
* * * *
968711 GCCCGCTCATTTCGTCGGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GA
325 GCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * * * *
968775 CCGAAGGTTACGGTAGTAGGATCGGCAGCACG-AGA-GAGGACCCG-CCGATCCCCGACTT--GC
390 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * *
968835 ATCCTG---CTCTGGCCGACTGAGCGCCCGTACGCTC-TTTTCGTGGGTTGACTTAGGAATACGG
455 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTCGTGGGTTGACTTAGGCATACGG
968896 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTT
520 AGTTCATTCCCAG--T---C-TA---AG-T-A-T-CCAG----AGATCGGAT-----CGAGGGTT
* * * * *
968961 ACGGTAGCACATGCTGGGCAT-GGGCATGTGCTGGTCCCGCATTTCTCTTCGTCGGGGCACCATC
563 ACGGCAGCACATGCTGGG-TTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
** * * **
969025 ATCGGAGCATCG-CTGGAGAACCTGATC-GACGGCATTGGGGTTCTGACGATCAAGGGGGCCGGG
627 GCCGGAGCATCGTC-GGAGAACCTGACCAG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
* * *
969088 GGATGTGCGCACATGATGTGTGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
690 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
969153 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
755 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * ** *
969218 GCCATTAAAATGTCTAAAACAGGGACACTTTTTTCAAATGGTCAAAAAATCTTGT
820 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
969273 ACACTTCGAGTTTTTAGCTG-ATTTTTTTATGCATGCCAACAAAAATAAAAGGATCACGTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * ** **
969337 AAGTTTGGGGCCAAAACTTTCTTCGAAAAAATTTTAAAAAATTTCGAACCGTAAAAAGTTTCAAA
66 AAGTTTGGGGCCAAAAC-TCCTTCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
* * *
969402 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTACACGTGAAGGCTTAAGGAACCAT
130 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
969467 TGTATGAATTTACAAGCCATAAAACTGGCATTGGCATGCAGAAATATGAAGATGTGTCTAAACCA
195 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
*
969532 ACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGACGTA-CTGCCCGCCC
260 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTACCTGCCCGCCC
* * *
969596 GCCCGCCCG-TTCATC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGA
325 GCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* *
969659 CTGAGGGTTGCGGCAGCAGGATCGGCAGCATGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
390 CCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGC
* * *
969724 ATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCATGCTCGTTTTCGCGGGTTGACTTAGGCATACGG
455 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTCGTGGGTTGACTTAGGCATACGG
*
969789 AGTTCATTCCCAGTCTAAG-AT-C-G-GATCGGATCGAGGGTTATGGCAGCACATGCTGGGTTCG
520 AGTTCATTCCCAGTCTAAGTATCCAGAGATCGGATCGAGGGTTACGGCAGCACATGCTGGGTTCG
* ** * * *
969850 AGCATGTGCTGGTGCCACA-TTTTCTTCACCGGGGTACCATCACCGGAGCATCGTCGGAGAACTT
585 AGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
*** * * * *
969914 GA-CAGCAAAATTGGGGTTACAACAATCGGGGGGGCCGAGGGGGGGTGTGCGCACATGATGTGTG
650 GACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCC---GGGGGGTGTGCGCACATGATGTGCG
* *
969978 ATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAAC
712 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
970043 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAATGG
777 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
970108 GGACACTCTTTTCAAATGATCACAAAATCTTGT
842 GGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
970141 ACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* *
970206 AAGTTTGGGGCCAAAAATCCTTCCAAAGAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAC
66 AAGTTTGGGGCCAAAACTCCTTCCAAA-AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
970271 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
130 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
970336 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
195 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * *
970401 ACCTACCACCCTATCGATCCACGGCTTGCGCATCACGTCCCTCTGGCCTGCGTAATGTCCGCCCG
260 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG--T-CG--ACGT--ACCTG
* * *
970466 CCCGCCTGCCCGGCCGCTCGTTTCGTCGGTCGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
318 CCCGCCCGCCC-G-C-C-CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * ** **
970531 ATCAGACCGAACCAAGGGTTGCGGTAATA-GATCGGCAGCACACAGAGGGGGA-CCGATCGATCC
379 ATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCC
* * * * *
970594 CC-GCTTGCGTGCATTCTGCCCCTCTAGCCGACT-AG-GCTGCCACACGCTTCG-TTTCATGGGT
444 CCGGCTTGC--GCATCCTGCCCCTCTGGCCGGCTGAGCGC--CCGCACGC-TCGTTTTCGTGGGT
970655 TGACTTAGGCATACGCAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
504 TGACTTAGGCATACG--GAGTTCATTCCCAG--T---C-TA---AG-T-A-T-CCAG----AGAT
** * *
970720 CGGATCGGACCGAAGGTTGTGGCAGCACATGTTGGGCTT-G-GCATGTGCTAGTGCCGCATTTTT
550 CGGATC-GA--G--GGTTACGGCAGCACATGCTGGG-TTCGAGCATGTGCTGGTGCCGCATTTTT
** * *
970783 CTTCACCGGGGCACCATTGCCGAAGCATCGTCGGAGAACCTGACCA-CGGCATTGGGGTTCCGAC
609 CTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCGAC
* *
970847 GATCGGAGGGGCC-GGGGGTGTGCGCACATGATGTGCGAT-GGTGCTGGTACTTGGCCCCTATAT
674 GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
970910 TGGGCCCGTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTAT
739 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
970974 AGGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAA
804 AGG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
971039 TTCTTGT
868 ATCTTGT
* * *
971046 ACACTTCGAGTTTTAAGCTGAATTTTTTTGTGCATGCCAAC-AAAATACGAGGATCTCGTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
** * * * * *
971110 AAGTTTGCAGCCAAAACTCCTTCTGAAAAAATTTCAAAAAATGCCGAATCG-CAAAAGTTTTGAA
66 AAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
*
971174 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCGTGAAGGCTTAAGGGACCAT
130 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * *
971239 TGTATGAATTTACAATCCATAAAAATGGCATTGGCACGTAGAAACATGAAGATGTGCCTAAACCA
195 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
*
971304 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGTCGACGTAGTGCCCGCCCG
260 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA-----------
* *
971369 CCCGCCCGCCCGCCCGCTCCGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTC
314 CCTGCCCGCCCGCCCG--CC--CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
971434 TAAGATCAGACCAGACCGAAGGTTGCGGCAGCAGGATTGGTAGCACGTAGAGGGGGACTCGATCG
375 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCG
* * * * * * *
971499 ATCCCCGGCTTGTGCATTCTGCCCCTCTGGTCGACTGAGCGCCCTCACGCTTGTTTTATGGGTTG
440 ATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTT-T-CG-TG
*
971564 ACTTAGGCATGCAGAGTTCATTCCCAGTCTCAGCATACGGAGTTCATTCCCAGTCTGAGGATACA
501 -----GG--T--TGA---C-TT---AG-----GCATACGGAGTTCATTCCCAGTC------T--A
* * * *
971629 GAGATCATTCCCAGTCTAAGATCGGACTAGATCGAAGGTTGCGGCAGCACATGCTGGGCTCGGGC
537 -AG-T-A-T-CCAG----AGATC-G----GATCGAGGGTTACGGCAGCACATGCTGGGTTCGAGC
* * *
971694 ATGTGCTGGTGTCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
588 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * * * *
971759 C-GACGACATT-GGGTTTCGACGATCGAGGGGGCCAGGGGGTGTGCACACATGATGTGCGATGGG
653 CAG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
971822 TGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
717 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
971887 TAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACA
782 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
971952 CTTTTTTCAAATGGTTACAAAATCTTGT
847 CTTTTTTCAAATGGTCACAAAATCTTGT
971980 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG-CTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * ** *
972044 AAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAG-GATCAA
66 AAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
* * *
972108 ATATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCA
130 A-ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
** *** *
972173 TAATATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGGTGTGCCTAAACC
194 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* ** *
972238 CACCTACCACCCTATCGATTCACGGCTTGCTTATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCC
259 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA---CCTGCCC
*
972303 GCCCGCCCGTCCGCTGCTTGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAG
321 GCCCGCCCG--C-C--C--GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * * *
972368 ATCGGATAGGACCGAGTGTTGCGACAGCAGGATCAGCAACACGTAAAGGGGGACCTGATCGATCC
379 ATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCC
* * * * * *
972433 TCGGCTTGCACATCCTGCCCCTTTGGCTGGCTGAGCGCTCGCACGCTCGTTTT-GTGAGTTGACT
444 CCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTCGTGGGTTGACT
*
972497 TACGCATACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGGATTG
509 TAGGCATACGGAGTTCATTCCCAG--T---C---TA-AG-T-A-T-CCAG----AGATCGGA-T-
* * * * * * *
972562 GACCGAAGGTTGCGGTAGTACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCG
555 ---CGAGGGTTACGGCAGCACATGCTGGGTTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* **
972627 GGGCACCATCGCCGGAGCATCATCGGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATCAGGG
617 GGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATC-GGG
* * *
972692 GGGGCCGGGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCG
681 GGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
972757 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCC-TAAAGAGAATTTGATATTTTACAGG-TT
745 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
972820 --TG-C--T-G-C----------CT----T---G-----------AAATGGTCACAAAATCTTGT
810 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
972850 ACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACC
1 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* ** * *
972915 AAGTTTGTGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCATAAAAAGTTTCGAA
66 AAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAA
* * * *
972980 TATCATGAAAAATAAAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
130 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * ** *
973045 TGTATGAATTTACGAGCAATAAAAATAGCATTGGCACACAGAAATATGAAGATGTGCCTTAACCC
195 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * *
973110 ACCAATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGACGTAGTGCCTGCCCG
260 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA---CCTGCCCG
* * * *
973175 CCCACCCACTCGTTTCATCAGG-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
322 CCCGCCCGCCCGTTTCGTC-GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * * * * * *
973239 CAGACTGACGGTTACGGCGGCAGGATCGGTAGCACATAGAGGGGGACACGGTTGATCCCCGGCTT
386 CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTT
* * * * * * *
973304 GTGCATCCCGCCCCTCTAGTCGGCTGAACGCCTGTACGCTCG-TTTCGTGGGTTGACTTAGGCAT
451 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTCGTGGGTTGACTTAGGCAT
*
973368 ACGGAGCTCATTCCCAGTCTAAG
516 ACGGAGTTCATTCCCAGTCTAAG
973391 CATACGAACT
Statistics
Matches: 4306, Mismatches: 493, Indels: 412
0.83 0.09 0.08
Matches are distributed among these distances:
855 2 0.00
856 2 0.00
857 57 0.01
859 2 0.00
860 7 0.00
862 7 0.00
863 12 0.00
864 164 0.04
865 28 0.01
866 72 0.02
867 185 0.04
868 278 0.06
869 379 0.09
870 75 0.02
871 239 0.06
872 14 0.00
873 1 0.00
874 3 0.00
877 13 0.00
878 8 0.00
879 96 0.02
880 281 0.07
881 101 0.02
882 81 0.02
883 205 0.05
884 52 0.01
885 13 0.00
886 9 0.00
887 14 0.00
888 3 0.00
889 9 0.00
890 2 0.00
891 1 0.00
892 24 0.01
893 40 0.01
896 1 0.00
897 1 0.00
898 4 0.00
899 4 0.00
900 5 0.00
901 1 0.00
902 1 0.00
903 181 0.04
904 230 0.05
905 185 0.04
906 62 0.01
907 174 0.04
908 48 0.01
909 34 0.01
910 95 0.02
911 4 0.00
912 4 0.00
913 1 0.00
916 2 0.00
917 2 0.00
918 1 0.00
919 1 0.00
920 1 0.00
921 2 0.00
924 1 0.00
925 4 0.00
926 2 0.00
927 18 0.00
928 5 0.00
929 4 0.00
930 134 0.03
931 59 0.01
932 81 0.02
933 39 0.01
934 214 0.05
935 218 0.05
936 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTACCTGCCCGCCCG
CCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
CGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCA
TCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGTATCCAGAGATCGGATCGAGGGTTACGGCAGCACATGCTGGGTTCGA
GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
ACCAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGT
Found at i:970704 original size:26 final size:27
Alignment explanation
Indices: 970663--970717 Score: 94
Period size: 26 Copynumber: 2.0 Consensus size: 27
970653 GTTGACTTAG
970663 GCATACGCAGAGTTCATTCCCAGTCTAA
1 GCATACG-AGAGTTCATTCCCAGTCTAA
970691 GCATACG-GAGTTCATTCCCAGTCTAA
1 GCATACGAGAGTTCATTCCCAGTCTAA
970717 G
1 G
970718 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 20 0.74
28 7 0.26
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (27 bp):
GCATACGAGAGTTCATTCCCAGTCTAA
Found at i:971369 original size:4 final size:4
Alignment explanation
Indices: 971360--971385 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
971350 TCGACGTAGT
971360 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
971386 TCCGTCGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:971606 original size:26 final size:26
Alignment explanation
Indices: 971570--971645 Score: 107
Period size: 26 Copynumber: 2.9 Consensus size: 26
971560 GTTGACTTAG
*
971570 GCATGCAGAGTTCATTCCCAGTCTCA
1 GCATACAGAGTTCATTCCCAGTCTCA
* *
971596 GCATACGGAGTTCATTCCCAGTCTGA
1 GCATACAGAGTTCATTCCCAGTCTCA
* *
971622 GGATACAGAGATCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
971646 AAGATCGGAC
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTCA
Found at i:973564 original size:183 final size:183
Alignment explanation
Indices: 973205--973572 Score: 445
Period size: 183 Copynumber: 2.0 Consensus size: 183
973195 GGTGGCTTAG
* * *
973205 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGACGGTTACGGCGGCAGGATCGGTA
1 GCATACGAACTTCATTCCCAGTCTAAGATCGGACCAGACTGACGGTTACGGCAGCAGGATCGGTA
* * ** * * * *
973270 GCACATAGAGGGGGACACGGTTGATCCCCGGCTTGTGCATCCCGCCCCTCTAGTCGGCTGAACGC
66 G-ACATAGAGAGGGACACAGCCGATCCCCGGCTTGCGCATCCCACCCCTCTAGCCGACTGAACGC
* * * *
973335 CTGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAA
130 CCGCACGCTCGTGTCATGGGTTGACTTAGGCATACGGAGCTCATT-CCAGTCTAA
* * *
973390 GCATACGAACTTCATTCCCAGTCTAAGATCGGATCAGA-TCGAGGGTTACGGCAGTAGGATCGGT
1 GCATACGAACTTCATTCCCAGTCTAAGATCGGACCAGACT-GACGGTTACGGCAGCAGGATCGGT
** * * *
973454 AG-CAT-GCAGATTGACCCAGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCG
65 AGACATAG-AGAGGGACACAGCCGATCCCCGGCTTGCGCATCCCACCCCTCTAGCCGACTGAACG
* * *
973517 CCCGCACGGTCGTGTCATGGGTTGACTTAGGTATACGGAGTTCATTCCAGTCTAA
129 CCCGCACGCTCGTGTCATGGGTTGACTTAGGCATACGGAGCTCATTCCAGTCTAA
973572 G
1 G
973573 ATCGGATCGG
Statistics
Matches: 155, Mismatches: 26, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
182 11 0.07
183 85 0.55
184 1 0.01
185 58 0.37
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.23
Consensus pattern (183 bp):
GCATACGAACTTCATTCCCAGTCTAAGATCGGACCAGACTGACGGTTACGGCAGCAGGATCGGTA
GACATAGAGAGGGACACAGCCGATCCCCGGCTTGCGCATCCCACCCCTCTAGCCGACTGAACGCC
CGCACGCTCGTGTCATGGGTTGACTTAGGCATACGGAGCTCATTCCAGTCTAA
Found at i:975333 original size:26 final size:26
Alignment explanation
Indices: 975294--975346 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
975284 TTTGACTTAG
*
975294 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
975320 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
975346 G
1 G
975347 ATGGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:975820 original size:85 final size:85
Alignment explanation
Indices: 975672--975834 Score: 249
Period size: 85 Copynumber: 1.9 Consensus size: 85
975662 AATGGTCACA
* * * * *
975672 AAATTTTGTACACTTCGATTTTTTAGTGAATTTTTTTGTGCATGCTAATAAAAATACAAGGATCA
1 AAATCTTGTACACTTCGAGTTTTTACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
975737 CGTCTACCAAGTTCAGGGCC
66 CGTCTACCAAGTTCAGGGCC
975757 AAATCTTGTACACTTCGAGTTTTTACCTG-ATTGTTTTT-TGCATGCCAACAAAAATACAAGGAT
1 AAATCTTGTACACTTCGAGTTTTTA-CTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGAT
975820 CACGTCTACCAAGTT
64 CACGTCTACCAAGTT
975835 TGGGGCTAAA
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
85 64 0.90
86 7 0.10
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (85 bp):
AAATCTTGTACACTTCGAGTTTTTACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
CGTCTACCAAGTTCAGGGCC
Found at i:976309 original size:26 final size:26
Alignment explanation
Indices: 976272--976324 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
976262 GTTGACTTAG
976272 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
976298 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
976324 G
1 G
976325 ATCGGAACGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:980573 original size:26 final size:26
Alignment explanation
Indices: 980537--980589 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
980527 GTTGACTTAG
*
980537 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
*
980563 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
980589 G
1 G
980590 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:984375 original size:26 final size:26
Alignment explanation
Indices: 984345--984397 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
984335 ATTGTCTTAG
*
984345 GCATATGGAGTTCATACCCAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
* *
984371 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATACCCAGTCTAA
984397 G
1 G
984398 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATACCCAGTCTAA
Found at i:985349 original size:868 final size:878
Alignment explanation
Indices: 983675--986012 Score: 2982
Period size: 868 Copynumber: 2.6 Consensus size: 878
983665 ATTGGTGCTG
* * * *
983675 GTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTCAAGAACTCAAACCCCTTTAAAG
1 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
983740 AACATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
66 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
983805 TTCAAATGGTCACAAAATCTTGTAAACTTCGATTTTTTACCTG-ATTTTTTTTTGCATGCCAAAA
131 TTCAAATGGTCACAAAATTTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACA
* * * *
983869 AAAATACAAGGATCATGTCTACCAAGCTTGGGGCCAAAA-ATCCTTCCGAAACAATTTTAAAAAT
196 AAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACA-CCTTCCGAAAAAATTTTAAAAAA
983933 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
260 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
**
983998 TCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTTC
325 TCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
* * *
984063 AAATAAGAAGATGTACCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCAT-CTCGTCT
390 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCT-GTCT
* * * *
984127 CTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCTCCCGCTCATTTTGTCGGTTGGCTTAGACATAC
454 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATAC
** * * ** * * *
984192 GGAGTTTGTT-CAAAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCTGCAGCACG
519 GGAGTTCATTCCCAA-TCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACA
* * ** * ** * *
984256 TAGAGTGGGACCCGGCTAATCCCTGGCTTGCACATCCCGCCCTTCTGGCCGACTGAGCGCCCGCA
583 CAGAGGGGGACCCAACCAATCCCCAGCTTGCACATCCCGCCCCTCTGGCCGACTGAGCACCCGCA
** * * * * *
984321 CGCTCGTTTCGTGAATTGTCTTAGGCATATGGAGTTCATACCCAGTCTAAGCATACGGAGTTCAT
648 CGCTCGTTTCGTGAATTGAATTAGGCATACGAAGTTCATACCCAATCTAACCATACAGAGTTCAT
* * * * * *
984386 TCCTAGTCTAAGATCGAACCGGACCGTGGGTTCCGGTAGCACATGCTGGGCTCAGGCATGTGCTG
713 TCCCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATACTGGGCTCAGGCATGTGCTG
* * ** * * *
984451 GTGCCGTATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCACCGGAGAACCTGACTGGTGGCA
778 GTGCCGCATTTTTCTTCGTCGAGGCACCATCACCAGAGCATCACCAGAAAACCTGACTGGCGGCA
984516 -TT-A-GGGTTCT-G-AC-GA-T-C-A-GGGGGCTC
843 GTTCAGGGGTTCTCGCACAGAGTGCGATGGGGGCTC
* *
984542 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACGCCCCCTTAAAG
1 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
984607 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTTTT
66 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
984672 TTCAAATGGTCACAAAATTTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCGAACA
131 TTCAAATGGTCACAAAATTTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACA
* * * *
984737 AAAATACAAAGATCAAATATAACAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAAT
196 AAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAAT
* *
984802 CCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
261 CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
*
984867 CACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGA
326 CACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGA
* *
984932 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCTGTCTCT
391 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCTGTCTCT
* * *
984997 CTGGCCGGCGTAGTTCCCGCCCGCCTTG-TCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACG
456 CTGGCCGGCGTAGTGCCCGCCCGCC-CGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACG
* * * *
985061 GAGTTCATTCCCAATCTAAGATCAGACCAAACTGAGGGTTGTGGCAGTAGGATCGGTAGCACACA
520 GAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACA
** * *
985126 GAGGGGGACCCAACCGGTCCCCAGCTTGCATATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACG
585 GAGGGGGACCCAACCAATCCCCAGCTTGCACATCCCGCCCCTCTGGCCGACTGAGCACCCGCACG
** * *
985191 CTCGTTTCGTGGGTTGAATTGGGCATACGAAGTTCATTCCCAATCTAACCATACAGAGTTCATTC
650 CTCGTTTCGTGAATTGAATTAGGCATACGAAGTTCATACCCAATCTAACCATACAGAGTTCATTC
* *
985256 CCAGTCTAAGATCGGACCAGACTGAGGGTTACGGCAGCACATACTGGGCTC-GAGCATGTGCTGG
715 CCAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATACTGGGCTCAG-GCATGTGCTGG
* * *
985320 TGCTGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCATCAGAAAACCTGACTGGCGGCAT
779 TGCCGCATTTTTCTTCGTCGAGGCACCATCACCAGAGCATCACCAGAAAACCTGACTGGCGGCA-
* * *
985385 TGGGCTTCCGACGATCGGGGGGCCGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTG
843 ---G-TT----C-A------------GGGGTTCT-CGCACA-GA-GTGCGATGGGGGCTC
* *
985445 GTACTTGGCCCTTATATTGGCCACCTATCCCCCATCAAACCTCGAGAACTCACACCCCCTTAAAG
1 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* ** *
985510 AGCATTTGAGATTTTACAGGTTTGCTACTTGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTT
66 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * * *
985575 TTCAAATGGCCACAAAATTTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACA
131 TTCAAATGGTCACAAAATTTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACA
* * * * * ** *
985640 AAAATACAAGGATCACGTCTTCCAGGTTCGGAGTGAAAACTCCTTCCGAAAAAATTTTAAAAAAT
196 AAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAAT
* * * *
985705 CCCGAACCCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCATCTTGTCATGAAACTT
261 CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
* * * * *
985770 CACGTGAAGGCCTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCATGCAGA
326 CACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGA
* * * *
985835 AATATGAAGATGTGTCTAAACCCACCTACCACCCTATTGATACACGGCTTGTGCATCCCGTCTCT
391 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCTGTCTCT
* * * * * * **
985900 CTGGCCGGCGTAATGCCCACCCGCCCGCCCGCCTGCACGTTTCGTTGGTCTATC-TAGGCATACG
456 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGT-TGGCTTAGGCATACG
* * * * * * *
985964 GAGTTCATTCCCAGTCTAGGATCAGAGCAGACCAAGGGTTACGGTAGCA
520 GAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCA
986013 CATACTAGGG
Statistics
Matches: 1266, Mismatches: 162, Indels: 50
0.86 0.11 0.03
Matches are distributed among these distances:
867 162 0.13
868 574 0.45
869 7 0.01
874 2 0.00
880 1 0.00
893 6 0.00
895 1 0.00
896 2 0.00
898 2 0.00
900 1 0.00
901 1 0.00
902 2 0.00
903 503 0.40
904 2 0.00
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (878 bp):
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATTTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACA
AAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAAT
CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
CACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCATCCTGTCTCT
CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAG
AGGGGGACCCAACCAATCCCCAGCTTGCACATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGC
TCGTTTCGTGAATTGAATTAGGCATACGAAGTTCATACCCAATCTAACCATACAGAGTTCATTCC
CAGTCTAAGATCGAACCAGACCGAGGGTTACGGCAGCACATACTGGGCTCAGGCATGTGCTGGTG
CCGCATTTTTCTTCGTCGAGGCACCATCACCAGAGCATCACCAGAAAACCTGACTGGCGGCAGTT
CAGGGGTTCTCGCACAGAGTGCGATGGGGGCTC
Found at i:986619 original size:715 final size:718
Alignment explanation
Indices: 985240--986727 Score: 2092
Period size: 715 Copynumber: 2.1 Consensus size: 718
985230 CCAATCTAAC
* * **
985240 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGCAGCACATACTGGGC
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATACTGGGC
*
985305 TCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCATCAGAAAA
66 TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCATCAGAAAA
* * *
985370 CCTGACTGGCGGCATTGGGCTTCCGACGATCGGGGGGCCGGGGGGTTGTGCGCACATGATGTGCG
131 CCTGACCGACGGCATTGGGCTTACGACGATCGGGGGGCCGGGGGGTTGTGCGCACATGATGTGCG
* * *
985435 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCCCATCAAACCTCGAGAACTCACAC
196 ATGCGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCCCATCAAAACTCAAGAACTCACAC
* **
985500 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTTGTAGCAATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGG
* * * * *
985565 GGACACTTTTTTCAAATGGCCACAAAATTTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTG
326 GGACACTTTTGTCAAATAGCCACAAAATCTTATACACTTTGAGTTTTTAGCTAAATTTTTCTGTG
* * * ** *
985630 CATGCCAACAAAAATACAAGGATCACGTCTTCCAGGTTCGGAGTGAAAACTCCTTCCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTCGGAGCCAAAACTCCTTCCAAAAAAAT
* *
985695 TTTAAAAAATCCCGAACCCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAATGAGTCATCTTGT
456 TTTAAAAAATCCCGAACCCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
* * *
985760 CATGAAACTTCACGTGAAGGCCTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCAAT
521 CATGAAACTTCACATGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCAAT
* * * * *
985825 GGCATGCAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATTGATACACGGCTTGTGCA
586 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGAA
* * * *
985890 TCCCGTCTCTCTGGCCGGCGTAATG-CCCACCCGCCCGCCCGCCTGCACGTTTCGTTGGTCTATC
651 TCCCGTCTCTCTGGCCGGCATAATGCCCCA-CCGCCCGCCCGCCCGCACGTTTCGTCGGT-TAGC
985954 -TAGG
714 ATAGG
* * *
985958 CATACGGAGTTCATTCCCAGTCTAGGATCAGAGCAGACCAAGGGTTACGGTAGCACATACTAGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATACT-GGG
* * * ** * *
986023 -TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCG-GGCCACCATTGCTGGAGCATCGTCAGAG
65 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGG-CACCATCGCCAGAGCATCATCAGAA
*
986086 AACCTGACCGACGGCATTAGGG-TTATGACGATCGGGGGGCCGGGGGG-TGTGCGCACATGATGT
129 AACCTGACCGACGGCATT-GGGCTTACGACGATCGGGGGGCCGGGGGGTTGTGCGCACATGATGT
* * *
986149 GCGATGCGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTAT-CCCTATCAAAACTCAAGAACTCA
193 GCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCCCATCAAAACTCAAGAACTCA
* *
986213 CACCCCTTTAAAGAGCAATTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAA
* *
986278 T-GGGACACTTTTGTCAAATAGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTCT
323 TGGGGACACTTTTGTCAAATAGCCACAAAATCTTATACACTTTGAGTTTTTAGCTAAATTTTTCT
* * * *
986342 GTGCATGCCAATAAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTCGGAGCCAAAACTCCTTCCAAAAA
* ** * * * *
986407 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGGAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCT
* * *
986472 TGCCGTTAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGC
518 TGCCATGAAACTTCACATGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGC
* * * *
986537 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
583 AATGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGC
* * ** * * * *
986602 GAATCCTGTCTCTCTGGCTGGCATGGTGCCCCACCTCCCGCCCGCCCGCTCGTTTTGTCGGTTGG
648 GAATCCCGTCTCTCTGGCCGGCATAATGCCCCACCGCCCGCCCGCCCGCACGTTTCGTCGGTTAG
986667 CATAGG
713 CATAGG
* ** *
986673 CATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCA
1 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCA
986728 AGATCGACAG
Statistics
Matches: 675, Mismatches: 90, Indels: 13
0.87 0.12 0.02
Matches are distributed among these distances:
714 2 0.00
715 381 0.56
716 85 0.13
717 56 0.08
718 145 0.21
719 6 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (718 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAGCACATACTGGGC
TCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCAGAGCATCATCAGAAAA
CCTGACCGACGGCATTGGGCTTACGACGATCGGGGGGCCGGGGGGTTGTGCGCACATGATGTGCG
ATGCGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCCCATCAAAACTCAAGAACTCACAC
CCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTACCAGTAGCAATTAAAGTGTCTGAAATGG
GGACACTTTTGTCAAATAGCCACAAAATCTTATACACTTTGAGTTTTTAGCTAAATTTTTCTGTG
CATGCCAACAAAAATACAAGGATCACATCTACCAAGTTCGGAGCCAAAACTCCTTCCAAAAAAAT
TTTAAAAAATCCCGAACCCCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
CATGAAACTTCACATGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCAAT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGAA
TCCCGTCTCTCTGGCCGGCATAATGCCCCACCGCCCGCCCGCCCGCACGTTTCGTCGGTTAGCAT
AGG
Found at i:987767 original size:26 final size:26
Alignment explanation
Indices: 987730--987782 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
987720 GTTGACTTAG
987730 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
987756 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
987782 G
1 G
987783 ATCGGATGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:988668 original size:26 final size:26
Alignment explanation
Indices: 988632--988682 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
988622 GTTGACTTAG
988632 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
988658 GCATATGGAGTTCATTGCCAGTCTA
1 GCATATGGAGTTCATTCCCAGTCTA
988683 TGATCAGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:988681 original size:902 final size:892
Alignment explanation
Indices: 985952--989423 Score: 4388
Period size: 901 Copynumber: 3.9 Consensus size: 892
985942 CGTTGGTCTA
* * * * *
985952 TCTAGGCATACGGAGTTCATTCCCAGTCTAGGATCAGAGCAGACCA-AGGGTTACGGTAGCACAT
1 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TAGA-CAGAGGGTTGCGGCAGCACAT
* * * ** * *
986016 ACTAGGG-TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGCCACCATTG-CTGGAGCATC
64 GCT-GGGCTCGGGCATGTGCTGGTGCCGCAATTTTCTTCACCGGGGCACCATCGTC-GGAGCATC
** * * * *
986079 GTCAGAGAACCTGACCGACGGCATTAGGGTTATGACGATC-GGGGGGCCGGGGGGTGTGCGCACA
127 ACCGGAGAACCTAACCGACGGCATTGGGGTTACGACGATCGGGGGGGCCGGGGGGTGTGCGCACA
* * *
986143 TGATGTGCGATGCGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCT-ATCAAAACTCAAG
192 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
* * *
986207 AACTCACACCCCTTTAAAGAGCAATTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGT
257 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
986272 CTGAAAT-GGGACACTTTTGTCAAATAGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGAAT
322 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
986336 TTTTCTGTGCATGCCAAT-AAAAATACAGGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT
387 TTTTTTGTGCATGCC-ATCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-T
* ** * *
986400 CCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGGAAAATAGAAAACGA
450 CCAAAAAAA-TTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* * * *
986465 GTCGTCTTGCCGTTAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAA
514 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAA
* *
986530 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAT
579 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * *
986595 GGCTTGCGAATCCTGTCTCTCTGGCTGGCATGGTGCCCCACCTCCCGCCCGCCCGCTCGTTTTGT
644 GGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGT-------CGCCCGCCCGCCCGCTCGTTTCGT
* * * *
986660 CGGTTGGCATAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTGAGGGTTGCGGCA
702 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTA
* * * * * * * *
986725 GCAAGATCGACAGCACGT-AGAGGGGGA-CCTGACAAATCCCCAGCTTCCGCATCCCCCCCCTCT
767 GCAAGATCGATAGCACGTGAGAGGGAGACCCGGTC-GATCCCCGGCTTGCGCAT--CCCTCCTCT
* * *
986788 GGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTAACTTAGGCGTACGGAGTTCATTCCCAG
829 GGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * *
986852 TCTAAGCATACGAAATTCATTCCCAATCTAAGATCAGACTAGACCAAAGGGTTGCGACAGCACTT
1 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TAGA-CAGAGGGTTGCGGCAGCACAT
* * *
986917 GTTGGGCTCGAGCATGTGCTGGTGCCGC-ATATTTCTTCACCGGGGCACCATCGTCGGTGCATCA
64 GCTGGGCTCGGGCATGTGCTGGTGCCGCAAT-TTTCTTCACCGGGGCACCATCGTCGGAGCATCA
* * * *
986981 CCGGAGAACCTGATCGACGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACAT
128 CCGGAGAACCTAACCGACGGCATTGGGGTTACGACGATCGGGGGGGCCGGGGGGTGTGCGCACAT
* * *
987046 GATGTGAGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCGCATCAAA-CTCAAGA
193 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* * * *
987110 ACTCACAACCCCTTAAAGTGCATTTCAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTC
258 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
987175 TAAAATGGGGAC-CTTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAAT
323 TGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
987239 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTC
387 TTTTTTGTGCATGCCATCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TC
* *
987304 CAAAAAAGTTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
451 CAAAAAA-ATTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* * * *
987369 TCATCATGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGCATGAATTTACAAGCCACAAA
515 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAA
* *
987434 AATGGCATTGGCATGCAGTAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
580 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
987499 GCTTGCGCATCCCGTCTCTCTGACCGGCATAGTGCCAGCCCGCCCGTCCGCTCGTTTCGTCGGTT
645 GCTTGCGCATCCCGTCTCTCTGGCCGGCATAGT--C-GCCCGCCCGCCCGCTCGTTTCGTCGGTT
* *
987564 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGTAGCAGG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAAG
* * * * *
987629 ATCGGTA--ACATGCA-AAGGAGGACCCGATCGATCCCCGGCTTGTGCATCCCATCCCTCTGGCC
772 ATCGATAGCACGTG-AGAGGGA-GACCCGGTCGATCCCCGGCTTGCGCATCCC-T-CCTCTGGCC
* * *
987691 GACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAG
833 GACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * *
987751 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATGGGATAGAGGGTTGCGGCAGTACATG
1 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT-AGACAGAGGGTTGCGGCAGCACATG
* * *
987816 CTGGGCTCGGGCATGTGCTGGTGCCGCAATTTTCTTTACCGGGGCACCATCGTCGGGGCATCATC
65 CTGGGCTCGGGCATGTGCTGGTGCCGCAATTTTCTTCACCGGGGCACCATCGTCGGAGCATCACC
* ** *
987881 GGAGAACCTAACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGCGCGCACATG
130 GGAGAACCTAACCGACGGCATTGGGGTTACGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATG
*
987946 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
194 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
*
988011 CTCACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
259 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
988076 GAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGACTTTTCAGCTGATTTT
324 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA--AT
* * * *
988141 TTTTTTGGGCTTGCCATCAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-CG
387 TTTTTTGTGCATGCCATCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCC
*
988205 AAAAAAATTTAAAAAATCTTGAA-C-TAAGAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
452 AAAAAAATTTAAAAAATCTTGAACCGT-A-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
988268 T-GATTCTTAGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACTAAGCCA
515 TCG--TCTT-GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCA
* * ** * *
988332 -TAAAATGGGGCATTCGCACATAGAAATATGAAGATGTACTTTAAACCCACCTACCACCGCTATC
576 CAAAAAT--GGCATTGGCACGCAGAAATATGAAGATGTGC-CTAAACCCACCTACCACC-CTATC
* * **
988396 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAGCGTAGT-GCCCGCTTGCCCGCTCGTTTCGT
637 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTCGCCCGCCCGCCCGCTCGTTTCGT
** * * * * *
988460 CGGTTGGCTTAAACATATGGAGTTCATTCCCAGTCTAAGATCGGACGAGATTGAGTGTTGTGGTA
702 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTA
* * *
988525 GTATGATCGATAGCACGTGAGAGGGAGACCCGGTCGATCCCTCGGCTTGCGTATCCGGCTCCTCT
767 GCAAGATCGATAGCACGTGAGAGGGAGACCCGGTCGATCCC-CGGCTTGCGCATCC--CTCCTCT
* *
988590 GG-CGACTGAGCACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAG
829 GGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * **
988653 TCTAAGCATATGGAGTTCATTGCCAGTCTATGATCAGATCAG-CGGAGGGTTATGGCAGCACATG
1 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT-AGACAGAGGGTTGCGGCAGCACATG
* * * ** * * *
988717 CTGGGCCCGGACATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGTCGAAGCATCGCC
65 CTGGGCTCGGGCATGTGCTGGTGCCGCAATTTTCTTCACCGGGGCACCATCGTCGGAGCATCACC
*
988782 GGAGAACCTAACCGACGGCATTGGGGTTACGACGATTGGGGGGGCCGGGGGGGTGTGCGCACATG
130 GGAGAACCTAACCGACGGCATTGGGGTTACGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATG
*
988847 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGAA
194 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
** * * *
988912 CTCACACCTTCTTAAAGAACATTTGAGATTTTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCT
259 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* ** *
988977 GAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTCCACACTTTGAGTTTTTAGCTGAAGTT
324 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TT
* *
989042 TTTTT-TGCATGCCA-AAACAAATACAAGGATCACGTCTACCAAGTTT-GGGCTCAAATCTCCTT
388 TTTTTGTGCATGCCATCAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCC--
* * *
989104 TCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATTGAAAACGA
449 TCCAAAAAAATTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
989169 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAG-CATTA
514 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-CA
*
989233 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
578 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * ** *
989298 CGGCTTGCGCATCACGTCTCTCTGGCTGACGTAGTGCCAGCCCGCCTACCCACTCGATTATTTCG
643 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGT--C-GCCCGCCCGCCCGCTCG----TTTCG
* * * * * * *
989363 TCGGTTCGCTTAGCCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACAGAGGGTTG
701 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTG
989424 GGGCAGCACA
Statistics
Matches: 2244, Mismatches: 269, Indels: 114
0.85 0.10 0.04
Matches are distributed among these distances:
896 42 0.02
897 24 0.01
898 157 0.07
899 372 0.17
900 248 0.11
901 540 0.24
902 372 0.17
903 370 0.16
904 75 0.03
905 44 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATAGACAGAGGGTTGCGGCAGCACATGC
TGGGCTCGGGCATGTGCTGGTGCCGCAATTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCG
GAGAACCTAACCGACGGCATTGGGGTTACGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TTGTGCATGCCATCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTCCAAAA
AAATTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGC
ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGGCATAGTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAAGATCGATAGC
ACGTGAGAGGGAGACCCGGTCGATCCCCGGCTTGCGCATCCCTCCTCTGGCCGACTGAGCGCCCG
CACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
Found at i:990067 original size:12 final size:12
Alignment explanation
Indices: 990050--990074 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
990040 CGTAGTGCCT
990050 GCCCGCCCGCTC
1 GCCCGCCCGCTC
990062 GCCCGCCCGCTC
1 GCCCGCCCGCTC
990074 G
1 G
990075 TTTCATCGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.64, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCCGCCCGCTC
Found at i:992169 original size:704 final size:702
Alignment explanation
Indices: 990277--994672 Score: 3317
Period size: 716 Copynumber: 6.0 Consensus size: 702
990267 CCCAGTCTAA
* *
990277 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACAAGCTGGG
* * * * *
990342 CTGGGGCATGTGCTGGTGTCACATTTTTCTTC-ACCAGGGCACCATCGCCGGAGCAT-TATCGGA
66 CTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGA-GGCACCATCGCCGGAGCATCT-TCGGA
* ** * *
990405 GAACCTTACCGACGGCATTGGGGTTCCGGCGATAAAGGGGGCCGGGGGGTGTGCGCACATGATGT
129 GAACCTAACCGACGGCATTGGGGTTCCGATGAT--CGGGGGGCGGGGGGTGTGCGCACATGATGT
*
990470 GCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
192 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCA
* *
990535 CTCTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAA
256 CAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
990600 TGAGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAATTTTTTT
* * * *
990665 GTGCATGCCAACAAAAATGCAAGGATCATGTCTACCAAGTTTGGGGTCAAAACCCTTTCGAAAAA
385 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAAAACCCTTCCGAAAAA
* * * ** * *
990730 ATTTCAAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAAAGAACGAGTCGTCT
450 ATTT-TAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
*
990795 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCGTTGTATGAATTTAAAAGCCATAAAAATGGC
514 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGC
* *
990860 ATTGGCATGCAGAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
579 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
990925 GCATCCCGTGTCTCTGGTCGACGTAGTACCCGCTCGCCCGCCCGCCCG-TTCATTTTGTCGGTTG
644 GCATCCCGTCTCTCTGGTCGA--T-GTA---G-TCGCCCGTCCGCTCGTTTCA-----TCGGTTG
990989 GCTTAG
697 GCTTAG
* ** * * * * *
990995 GCATACGGGGTTCATTCCCAGTCTAAGATTGGA-TAGGATCGAGGGTTTCTGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGCGGCAGCACAAGCTGG
* * * ** **
991059 GCTAGAGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCATCGGAGCATCACCGGAG
65 GCTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCTTCGGAG
* * * * *
991124 AACCTAATCGGCGGCATTGGGGTTTCGATGATCGGGGGGGCCGGGGG-GTGCGCACAAGATGTGC
130 AACCTAACCGACGGCATTGGGGTTCCGATGATC-GGGGGGCGGGGGGTGTGCGCACATGATGTGC
* * * *
991188 GATGGGTGGTAGTACTTGGCCCTTATATTGGCCACCTATCCCTCTTCAAACCTCGAGAAATCACA
194 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACA
*
991253 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
258 CCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
991318 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-CCTGATTTTTTTTG
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCC-GAATTTTTTTG
* * *
991382 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGTTCCAAAAATCCTTCCGAAAA
386 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGG-GCC-AAAACCCTTCCGAAAA
*
991446 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
449 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
* * *
991511 TGCCATGCAACATCATGTGAAGGCTTAAGGGACCATTATATGAATTTAAAAGCCATAAAAATGGC
514 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGC
*
991576 ATTGGGATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
579 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
991641 GCATCACGTCTCTCTGGCCGATGTAGT-GCCCGTCCGCTCGTTTCATCGGTTGGCTTAG
644 GCATCCCGTCTCTCTGGTCGATGTAGTCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAG
*
991699 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACAAGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACAAGCTGGG
** * * *
991763 CCCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGAGGCACCATCGCCGGAGCATCTTTGGAGA
66 CTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCTTCGGAGA
*
991828 ACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
131 ACCTAACCGACGGCATTGGGGTTCCGATGATCGGGGGG-C-GGGGGGTGTGCGCACATGATGTGC
*
991893 GATGGGTGCT-GTTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCATACCTCATGAACTCAC
194 GATGGGTGCTAG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA-GAACTCAC
* * * *
991956 ACCCCTTAAAGAGCATTTGATATTTTACAAGTTTGCTGCAAAATAGCCATTAAAGTGTCTGAAAT
257 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-CAGTAGCCATTAAAGTGTCTGAAAT
992021 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAATTTTTTTG
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAATTTTTTTG
* * *
992086 TGCATGCCAACAAAAATACAGGGATCATGTCTACAAAGTTTTGGGCCAAAACGCCTTCCTAAAAA
386 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAAAAC-CCTTCCGAAAAA
* *
992151 ATTTTAAAAAATCCTGAACCGGAAAAAGTTTCAAAAATCATGAAGAATAAAAAACGAGTCGTCTT
450 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
* *
992216 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
515 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
* * *
992281 TTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACTGCTTGCG
580 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** *
992346 CATCCCGTCTCTTTGGTCGGCGTAGTGCCCGCCCGTCCGTCCGCCCACTCATTTCATCGGTTGGC
645 CATCCCGTCTCTCTGGTCGATGTAGT---CG--C--CCGTCCG----CTCGTTTCATCGGTTGGC
992411 TTAG
699 TTAG
* * * *
992415 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTTACGACAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT--G-C----GG--CAGC-
* * * ** * * *
992480 ACAAGCAGAGG---GGGACCCGATCGATCCTCGACTTG-CGCA--TCCCGTCCCTC-TGGC-CTG
56 ACAAGCTG-GGCTAGGG---C-AT-G-TGCT-G--GTGCCGCATTTTTC-TTCGTCGAGGCAC--
* * * ** * ** *
992537 TTGAGCGCCCGCACGC-TCGTTTCGTG-G--GTTGACATA-GGCATATGGAGTTCATTCCTAGTT
108 --CATCG-CCGGA-GCATC--TTCG-GAGAACCTAACCGACGGCAT-TGG-G---GTTCC--G--
* * * * * * * * * *
992597 TAAGATCGGATCGGACCGAGGGT-TACGACAGCACATGCTG-G-GCTCGGGCATTACCAGAGAAC
157 -ATGATCGG--GGGGCGGGGGGTGT--G-C-GCACATGATGTGCGAT-GGG---T-GC-TAGTAC
* * ** * *** * ** ****** ** *** * ***
992659 CTGACCGACGGCAT-TGGGGTTCCGA-CGATCGGGGGGGCCGTGGGGGGT-GC-GTGC--AAATG
209 TTGGCC--C-TTATATTGGCCCCCTATCCCTC-ATCAAACC-TCAGAACTCACACCCCTTAAA-G
** * * ** * ** ** * * **
992718 ATGTGTGGTGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAA--ACCTAGAG
268 A-GCAT--T-TGAGATTTTAC-AGG---TT-TGCT-G-CCAGTAGCCAT--TAAAGTGTCT-GA-
* ** ** * *** * **
992781 AACT---CACACCTCCTTAAAGAGGATTTGAGTTTTTACAGGTTTGCTGCCAGTATC-CATTAAA
318 AA-TGGGGACA-CTTTTTTCA-A--A--TG-G---TCACA-AAAT-CT---TGTA-CAC-TTCGA
** ** * ** * * ** * *
992842 GTGTCTGAAATGGGGACACTTTTTT-TAAATGGTC-ACAAAATCTTGTAC-A-CTTCGAGTTTTT
365 GT-T-T-TTA-GCCGA-ATTTTTTTGTGCAT-GCCAACAAAA----ATACAAGGATC-A-TGTCT
** * *
992903 AGATGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAA
418 --ACCAA--GTTTTG-G---GCC------AAA-AC------C----CTTCC---------G----
* * * ** *
992968 AACTCCTTTCTAAAAAATTTCAAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAAT
445 AA---------AAAA--TTT-TAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* * *
993033 AAAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
498 AAAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAA
** * * * *
993098 AAGCCATAAAAATGGCATTGATACGCATAAATATGGAGATGTGCCTAAACCCACCAACCACCCTA
563 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * *
993163 CCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCATGC
628 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGATGTAGT---CGCCCGTCCGCTCG--T-T
* *
993228 TCATTTTGTGGGTTGACTTAG
687 TCA-----TCGGTTGGCTTAG
* * * * * *
993249 GCATACGGAGTTCATT-CGAGTCTAAGATCGGACCGGACCGAGGGTTTCTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACAAGCTGGG
* * ** * *
993313 CTAGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCATCAGAGCATCGTCGGAGA
66 CTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCTTCGGAGA
* ** * *
993378 ACCTGACCGGTGGCATTGGGGTTTCGATGATCGGGGGGGCCGGGAGG-GTGCGCACATGATGTGC
131 ACCTAACCGACGGCATTGGGGTTCCGATGATC-GGGGGG-CGGGGGGTGTGCGCACATGATGTGC
*
993442 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCGAGAACTCACA
194 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTCACA
*
993507 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
258 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
993572 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-CCTGATTTTTTTTG
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCC-GAATTTTTTTG
* *
993636 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGTTCCAAAACTCCTTCCGAAAA
386 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGG-GCCAAAAC-CCTTCCGAAAA
* *
993700 ATTTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
449 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
* * *
993765 TGCCATGCAACATCATGTGAAGGCTTAAGGGACCATTTATATGAATTTAAAAGCCATAAAAATGG
514 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCA-TTGTATGAATTTAAAAGCCATAAAAATGG
* * * *
993830 CATTGGGATGGCAGAAATATGAAGATGTGCCTAAA-CCAGCTA-CA-CCTATCGAT-CA-AGATT
578 CATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
993890 GCG-A--CCATCT-TCT-G-CGACGTAGT-G-CCGCCCGCTC-TTT-GTC-GTTGGCTTAG
642 GCGCATCCCGTCTCTCTGGTCGATGTAGTCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAG
*
993940 GCATACGGAG-T-ATTCCCAGTCTAAG-TC-G-CTAGA-CGAGGGTTGCGG-AGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACAAGCTGGG
* * ** * *
993998 CTCGGGCAT-T-CTAGTG--GCA-AGTAC-TCG-CGAGGCACCATCGCCGGAGCATCATCGGAGA
66 CTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCTTCGGAGA
* *
994056 A-CTAATGACAACGGCAGTTGGGGTCTCCGATG-TCGGGGGGGCTCGGGGGGTGGTGCGCACATG
131 ACCTAA--CCGACGGCA-TTGGGGT-TCCGATGATC-GGGGGG--CGGGGGGT-GTGCGCACATG
* * * * *
994119 ATGTCCGATGCGGTGCT-GT-TTTGG-CCTTATAAT-G--CCCTAT-CCT--T-ATACCTCGGGA
188 ATGTGCGATG-GGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AG-
* *
994174 AACGCACACCCCCTTAAAGAGCATTTGAGA--TTACAAGTTTGCTGCCAGTTAGCCATTAAAGTG
250 AACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG-TAGCCATTAAAGTG
*
994237 TCTGAAATGGGGGACGAC--TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
313 TCTGAAAT-GGGGAC-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCG
994300 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAAAACGCC
376 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAAAAC-CC
* * * * * * *
994365 TTCCTAAAAAATTTTAAAAAATCCCGAACTGGAAATAGTTTCAAAAATCATGAAGAATAAAAAAT
440 TTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAAC
* * *
994430 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCAT
505 GAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCAT
** * *
994495 AAAAATGGCATTGGCACACATAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCC
570 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * *
994560 ACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGTCCGCCCACTCGTTTA
635 ACGGCTTGCGCATCCCGTCTCTCTGGTCGATGTAGT---CG--C--CCGTCCG----CTCGTTTC
994625 ATCGGTTGGCTTAG
689 ATCGGTTGGCTTAG
994639 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
994673 TGGACTAAGG
Statistics
Matches: 2917, Mismatches: 481, Indels: 574
0.73 0.12 0.14
Matches are distributed among these distances:
672 23 0.01
673 56 0.02
674 225 0.08
675 51 0.02
676 4 0.00
677 11 0.00
678 34 0.01
679 7 0.00
680 24 0.01
681 26 0.01
682 5 0.00
683 36 0.01
684 7 0.00
685 20 0.01
686 10 0.00
687 4 0.00
688 1 0.00
689 5 0.00
690 10 0.00
691 19 0.01
692 7 0.00
696 3 0.00
697 3 0.00
698 3 0.00
699 21 0.01
700 1 0.00
701 14 0.00
702 17 0.01
703 159 0.05
704 396 0.14
705 58 0.02
707 9 0.00
708 13 0.00
709 8 0.00
710 7 0.00
712 8 0.00
713 8 0.00
714 3 0.00
715 16 0.01
716 543 0.19
717 98 0.03
718 152 0.05
719 5 0.00
720 1 0.00
724 2 0.00
725 3 0.00
726 3 0.00
727 6 0.00
728 5 0.00
729 2 0.00
730 2 0.00
731 8 0.00
732 5 0.00
733 3 0.00
734 10 0.00
735 14 0.00
736 3 0.00
737 4 0.00
738 1 0.00
739 4 0.00
741 5 0.00
743 1 0.00
744 12 0.00
745 6 0.00
746 7 0.00
747 9 0.00
749 1 0.00
750 6 0.00
751 11 0.00
752 4 0.00
753 10 0.00
754 7 0.00
755 7 0.00
756 1 0.00
757 3 0.00
759 3 0.00
760 6 0.00
761 11 0.00
762 8 0.00
763 10 0.00
764 1 0.00
765 6 0.00
766 2 0.00
767 4 0.00
768 9 0.00
769 11 0.00
770 1 0.00
771 5 0.00
772 2 0.00
773 8 0.00
774 4 0.00
776 4 0.00
777 8 0.00
778 2 0.00
779 5 0.00
780 1 0.00
781 12 0.00
782 10 0.00
783 4 0.00
784 1 0.00
785 7 0.00
786 1 0.00
787 10 0.00
788 7 0.00
789 16 0.01
790 2 0.00
791 2 0.00
792 2 0.00
793 3 0.00
795 5 0.00
796 18 0.01
797 5 0.00
798 8 0.00
799 7 0.00
800 5 0.00
801 3 0.00
802 9 0.00
803 5 0.00
804 3 0.00
805 3 0.00
806 10 0.00
807 2 0.00
809 5 0.00
811 3 0.00
812 1 0.00
813 4 0.00
814 3 0.00
815 11 0.00
816 9 0.00
817 4 0.00
818 4 0.00
819 8 0.00
820 2 0.00
821 2 0.00
822 5 0.00
823 6 0.00
824 3 0.00
825 3 0.00
826 3 0.00
828 1 0.00
829 3 0.00
830 7 0.00
831 4 0.00
832 1 0.00
833 30 0.01
834 228 0.08
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (702 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACAAGCTGGG
CTAGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCTTCGGAGA
ACCTAACCGACGGCATTGGGGTTCCGATGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAGAACTCACACCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAAAACCCTTCCGAAAAAATTTTA
AAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATG
AAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGTCGATGTAGTCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAG
Found at i:995662 original size:26 final size:26
Alignment explanation
Indices: 995632--995683 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
995622 GTTGAGTTAG
*
995632 GCATACGGAGTTCATTC-CTAGTCTAA
1 GCATACGCAGTTCATTCTC-AGTCTAA
*
995658 GCATATGCAGTTCATTCTCAGTCTAA
1 GCATACGCAGTTCATTCTCAGTCTAA
995684 TATCAGACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (26 bp):
GCATACGCAGTTCATTCTCAGTCTAA
Found at i:996584 original size:26 final size:26
Alignment explanation
Indices: 996546--996598 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
996536 GTTGACTTAG
*
996546 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
996572 GCATACAGGGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
996598 G
1 G
996599 ATCGGACAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:996750 original size:914 final size:910
Alignment explanation
Indices: 994877--996789 Score: 2570
Period size: 914 Copynumber: 2.1 Consensus size: 910
994867 GGGCATTACC
* * * * *
994877 AGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGGCCGTGGGGGGTAT-CTGCAA
1 AGAGAACCTGATCGGCGGCATTGGGGTTCCGACCATC-GGGGGGGCCG-GGGGGGTGTGC-GCAC
* *
994941 AAGATGTGC-AGTGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTAG
63 ATGATGTGCGA-TGGGTGCTAGTACTTGGCCATTATATTGGCCCCCTATCCCTCATAAAACCTAG
* * * * *
995005 AGAACTCACACCTCCTTAAAGAGGATTTGAGTTTTTACAGGTTTGCTGCCAGTATCCATTAAAGT
127 AGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
*
995070 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGA
192 CTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGA
* * *
995135 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
257 ATTTTTTTCTGCATGCCAACAAAAATAAAAAGATCACGTCTACCAAGTTTGGGGCCAAAAATCCT
* * * * *
995200 TCCGAAACAATTTTAAGAAATCCCGAACTGCCAAAAGTTTTGAAAATCATGAAAAATAGAAAACG
322 TCCAAAAAAATTTTAAAAAATCCCGAACTACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACG
995265 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATA
387 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATA
* *
995330 AAAATGGCATTGGCACGAAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCA
452 AAAATGGCATCGGCACGAAGAAATATGAAGATGTGCCTAAACCCAACTACCACCATATCGATCCA
** * * *
995395 CGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTTCCCTCCCGCCCGCCCGCCCGCTCATTTCG
517 CGGCTTGCACATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCG
* * * * * * *
995460 TTGGTTGGATTAGGCATATGGAGTTCATTCCCAGTCGAAGATCAAATCAGACTGAGGGTTGCTGT
582 TCGGTTGGATTAGGCATATGGAGTTCATTCCCAATCGAAGATCAAACCAGACCGAGGGTTACAGC
* ** * * * * * *
995525 AGAAGGTTCGGTAGTACACAGAGGGGGACTCGGCTGATCCTCGACTTGTGCATCCTGCCCCTCTG
647 AGAAGGATCGACAGCACACAGAGGGGGACCCGGCTAATCCTCGACTTGCGCATCCCGCCCCTCTA
* * * * * *
995590 GCCGGCTGAGCGCCCGCGCGCTCATTTCATGGGTTGAGTTAGGCATACGGAGTTCATTCCTAGTC
712 GCCGGCTGAGCACCCACACCCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTC
* *
995655 TAAGCATATGCAGTTCATTCTCAGTCTAATATCAGACCAGACCGAGGGTTGCGACAGCACATGCT
777 TAAGCATA-GCAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCT
* *
995720 AGGCTCAAGCACCATCGTCGGAGCATCGCCGAAGCATTTTTCTTCGTCAGGGCACCATCGCCGGA
841 AGACTC-AGCACCATCGTCGGAG-ATCGCC-AAGCATTTTTCTTCGTCAGGGCACCATCACCGGA
*
995785 GCATCGCC
903 GCATCGCA
* *
995793 GGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
1 AGAGAACCTGATCGGCGGCATTGGGGTTCCGACCATCGGGGGGGCCGGGGGGGTGTGCGCACATG
* * *
995858 ATGTGCGATGGGTGCTTGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
66 ATGTGCGATGGGTGCTAGTACTTGGCCATTATATTGGCCCCCTATCCCTCATAAAACCTAGAGAA
995923 CTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCT
131 CTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCT
*
995988 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTT
* *
996053 TTTTCTGCATGCCAACAAAAATAAAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCA
261 TTTTCTGCATGCCAACAAAAATAAAAAGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCA
* *
996118 AAAAAATTTTAAAAAATCCTGAAAC-ACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
326 AAAAAATTTTAAAAAATCCCG-AACTACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
*
996182 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
390 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAA
* * *
996247 ATGGCATCGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGG
455 ATGGCATCGGCACGAAGAAATATGAAGATGTGCCTAAACCCAACTACCACCATATCGATCCACGG
* *
996312 CTTGCACATCCCGTTTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
520 CTTGCACATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCG
* * ** ***
996377 GTTGGATTAGGCGTACT-GAGTTGATTCCCAATCTTAGATTGCACCAGACCGAGGGTTACAGCAG
585 GTTGGATTAGGCATA-TGGAGTTCATTCCCAATCGAAGATCAAACCAGACCGAGGGTTACAGCAG
** * * *
996441 CTGGATCGACAGCACGCAGAGGGGGACCC-GATCAAT-CTCTGGCTTGCGCATCCCGCCCCTCTA
649 AAGGATCGACAGCACACAGAGGGGGACCCGGCT-AATCCTC-GACTTGCGCATCCCGCCCCTCTA
* **
996504 GCCGGCTGAGCACCCACACCCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTGCC-AGT
712 GCCGGCTGAGCACCCACACCCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCTAGT
* * * **
996568 CTAAGCATA-CAGGGTTCATTCCCAGTCTAAGATCGGA-CAGGATCGAGGTTTGCGGTAGCACAT
776 CTAAGCATAGCA--GTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGCGACAGCACAT
* * ** * **
996631 GCTCA-ACTC-GC-GCAT-GTGCTG-G-T-GCC-A-CATTTTTCTTTTTCGGGGTGCCATCACCG
838 GCT-AGACTCAGCACCATCGT-CGGAGATCGCCAAGCATTTTTCTTCGTCAGGGCACCATCACCG
996687 GAGCATCGCA
901 GAGCATCGCA
* * * *
996697 AGAGAACCTGA-CTGGTGGGATTGGGGTTTCGGCCAGT-GGGGGGGCCGGGGGGGGTGTGCGCAC
1 AGAGAACCTGATC-GGCGGCATTGGGGTTCCGACCA-TCGGGGGGGCC-GGGGGGGTGTGCGCAC
*
996760 ATGATGTGCGATGGGTGCTGGTACTTGGCC
63 ATGATGTGCGATGGGTGCTAGTACTTGGCC
996790 CGCATACGGA
Statistics
Matches: 879, Mismatches: 103, Indels: 41
0.86 0.10 0.04
Matches are distributed among these distances:
903 1 0.00
904 68 0.08
905 47 0.05
907 3 0.00
908 1 0.00
910 3 0.00
911 5 0.01
912 4 0.00
913 7 0.01
914 687 0.78
915 19 0.02
916 34 0.04
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (910 bp):
AGAGAACCTGATCGGCGGCATTGGGGTTCCGACCATCGGGGGGGCCGGGGGGGTGTGCGCACATG
ATGTGCGATGGGTGCTAGTACTTGGCCATTATATTGGCCCCCTATCCCTCATAAAACCTAGAGAA
CTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGATGAATTT
TTTTCTGCATGCCAACAAAAATAAAAAGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCA
AAAAAATTTTAAAAAATCCCGAACTACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAA
TGGCATCGGCACGAAGAAATATGAAGATGTGCCTAAACCCAACTACCACCATATCGATCCACGGC
TTGCACATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGG
TTGGATTAGGCATATGGAGTTCATTCCCAATCGAAGATCAAACCAGACCGAGGGTTACAGCAGAA
GGATCGACAGCACACAGAGGGGGACCCGGCTAATCCTCGACTTGCGCATCCCGCCCCTCTAGCCG
GCTGAGCACCCACACCCTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAG
CATAGCAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTAGACT
CAGCACCATCGTCGGAGATCGCCAAGCATTTTTCTTCGTCAGGGCACCATCACCGGAGCATCGCA
Found at i:997728 original size:26 final size:26
Alignment explanation
Indices: 997692--997744 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
997682 GTTGACTTAG
*
997692 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
997718 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
997744 G
1 G
997745 ATCGGATCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:998462 original size:25 final size:26
Alignment explanation
Indices: 998434--998483 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
998424 GCTGACTTAG
998434 GCATACAGAGTTCATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
998459 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
998484 TGTTCGGACC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:998794 original size:26 final size:26
Alignment explanation
Indices: 998765--998817 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
998755 GTTGACTTAT
*
998765 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
998791 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
998817 G
1 G
998818 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:999001 original size:332 final size:330
Alignment explanation
Indices: 998344--999009 Score: 987
Period size: 332 Copynumber: 2.0 Consensus size: 330
998334 CCACCAACCA
*
998344 CCCTATCGATCCATGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGC
1 CCCTATCGATCCAGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGC
* *
998409 ATGCTCGTTTTGTGGGCTGACTTAGGCATACAGAGTTCATTCCAGTCTAAGCATACGGAGTTCAT
66 ATGCTCGTTTCGTGGGCTGACTTAGGCATACAGAGTTCATTCCAGTCTAAGCATACAGAGTTCAT
* *
998474 TCCCAGTCTATGTTCGGACCAGACCGAGGGTTACGACAGCACATGCTGAGATCGGGCATGTGCTG
131 TCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGAGATCGGGCATGTGCTG
* * *
998539 GTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTAGAGCATCACCGGAGAACTTGACCGGTGGCA
196 GTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTAGAGCATCACCGGAGAACCTAACCGATGGCA
* *
998604 TTGGGGTTCCAGCGATCGGGGGGGCCGGCGGGTGCGTGCGCACATGATGTGCGTGGGTACTGGTA
261 TTGGGGTTCCAGCGATCGGGGGGGCCGGAGGGTGCGTGCGCACATGATGTGCGTCGGTACTGGTA
998669 CTTGG
326 CTTGG
* *
998674 CCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGTCGTAGTGCCCGCCCGCCCGCCCG
1 CCCTATCGATCCA-GGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCG
* * *
998739 CATGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
65 CATGCTCGTTTCGTGGGCTGACTTAGGCATACAGAGTTCATT-CCAGTCTAAGCATACAGAGTTC
* * * * * *
998804 ATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCCA-CAGATGCTGGGCTCGGGCATGTG
129 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTAC-GACAGCACATGCTGAGATCGGGCATGTG
* * * *
998868 CTGGTGTCGTATTTTTCTTCGTCGGGGCACCATTG-TCGGAGCATCACCGGAGAACCTAACTGAT
193 CTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCT-AGAGCATCACCGGAGAACCTAACCGAT
* * * * * *
998932 GGCATTGGGGTTCCGGTGATCGGGGGGTCGGGAGGG-GTGTGCGCACATGATGTGCGATCGGTGC
257 GGCATTGGGGTTCCAGCGATCGGGGGGGCCGGAGGGTGCGTGCGCACATGATGTGCG-TCGGTAC
998996 TGGTACTTGG
321 TGGTACTTGG
999006 CCCT
1 CCCT
999010 TATATTGGTC
Statistics
Matches: 300, Mismatches: 31, Indels: 8
0.88 0.09 0.02
Matches are distributed among these distances:
330 13 0.04
331 106 0.35
332 178 0.59
333 3 0.01
ACGTcount: A:0.16, C:0.28, G:0.31, T:0.25
Consensus pattern (330 bp):
CCCTATCGATCCAGGCTTACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGC
ATGCTCGTTTCGTGGGCTGACTTAGGCATACAGAGTTCATTCCAGTCTAAGCATACAGAGTTCAT
TCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGACAGCACATGCTGAGATCGGGCATGTGCTG
GTGCCGTATTTTTCTTCGTCGGGGCACCATCGCTAGAGCATCACCGGAGAACCTAACCGATGGCA
TTGGGGTTCCAGCGATCGGGGGGGCCGGAGGGTGCGTGCGCACATGATGTGCGTCGGTACTGGTA
CTTGG
Found at i:999448 original size:26 final size:26
Alignment explanation
Indices: 999419--999497 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
999409 GTTGACTTAG
999419 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
999445 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
999471 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
999497 G
1 G
999498 ATCAGACCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1001269 original size:26 final size:26
Alignment explanation
Indices: 1001205--1001308 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
1001195 GTTGACTTAG
1001205 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1001231 GC-TACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1001256 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1001282 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1001308 G
1 G
1001309 ATCGGATCAG
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
25 25 0.34
26 48 0.66
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1001281 original size:51 final size:52
Alignment explanation
Indices: 1001205--1001308 Score: 183
Period size: 51 Copynumber: 2.0 Consensus size: 52
1001195 GTTGACTTAG
*
1001205 GCATACGGAGTTCATTCCCAGTCTAAGC-TACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
*
1001256 GCATACGAAGTTCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1001308 G
1 G
1001309 ATCGGATCAG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 26 0.52
52 24 0.48
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (52 bp):
GCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1002202 original size:26 final size:26
Alignment explanation
Indices: 1002166--1002218 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1002156 GTTGACTTAG
1002166 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1002192 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1002218 G
1 G
1002219 ATTAGCCTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1003991 original size:26 final size:26
Alignment explanation
Indices: 1003955--1004007 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1003945 GTTGACTTAG
1003955 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1003981 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1004007 G
1 G
1004008 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1004472 original size:874 final size:870
Alignment explanation
Indices: 1003248--1005532 Score: 2463
Period size: 874 Copynumber: 2.7 Consensus size: 870
1003238 GGCTGGGGGG
* *
1003248 TGTGCGCACATGATGTGCAATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATC
1 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
1003313 AAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCCA-TAGCC
66 AAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-GCCAGTAGCC
* * *
1003377 ATTAAAGTGTTTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGATTTT
130 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
1003442 TTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
195 TTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * ** *
1003507 AAAGTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAAT
259 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAAT
* * ** *
1003572 AAAAAATGAGTTATCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTCC
324 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTAC
* ** * *
1003637 AAGCAATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACTCACCTACCACCCTA
388 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
1003702 TCGATCCACGGCTTACGCTTCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCTCGCCCGC
453 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC-GCCCGCTCG--CGC
* *
1003767 TCGCCCGATCATTTCGAT-GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
515 -CGCCCGCTCATTTCGATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
* * * * *** * *
1003831 GAACTGGGGGTTGCGGTAGCAGGATCTGCAGCATGTAGAGGGGGACCCGACCGATCCACAGCTTG
579 GAACCGAGGGTTGCGATAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCC-CGGCTTG
* * *
1003896 CGCATCCCGCCCTTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATAC
643 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
1003961 GGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGG
708 GGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATT-CCAGTC---GATT---CC--ACC-AGGG
* *
1004026 TTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCTGGGGCACCAT
762 TTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGCTGGGGCACCAT
1004091 -C-G-TCGGAG-C-A-T-C-G-TCGGG-G-G-TC-GGGGGT-GC
827 CCAGATCGGAGACGACTACAGATCGGGTGAGATCGGGGGGTGGC
*
1004121 TGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
1 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* ** * *
1004186 AAACCTCGAGAACACAGGCTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTG-CTGTAGCC
66 AAACCTCGAGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
1004250 ATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAAATGGTCACAAAATCTTGTACACTTTGAGTT
130 ATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
1004315 TGTAGCTGAATTTTTTTGTGCATGCCAACAAAATACAAGGATCACGTCTACCAGGTTT-GGGCAC
194 TTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-C
1004379 TAAAACTCCTTCC-AAAAAAGTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAA
258 -AAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAA
* **
1004443 AATAGAAAACGAGTCATCTTGCCATGAAACTGAACGTGAAGGCTTACAGGACCATTGTATGAATT
321 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA-AGGACCATTGTATGAATT
* *
1004508 TACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACC
385 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * *
1004573 CTATCGATCCACGGTTTTCACATCCCGTCTCTCTCGTCGGCGTA------G-CGCCCG-TCG-G-
450 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCTCGCGC
* * *
1004628 C-CCCGCTCATTTTG-TTGGTTGGCTTAGGCATACGGAGGTCATTCCCAGTCTAAGATCAGACTG
515 CGCCCGCTCATTTCGATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG
* * * *
1004691 GACCGAGGGTTTGCGGTAGC---A--GG-A-CACGCAGA---GGACCC-A---AT---GGCTTAC
580 AACCGAGGG-TTGCGATAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCGGCTTGC
*
1004739 GCA-CCCG-----CTGGCC-G-TGAGCG---GTA--CTCG-TTCGT--GTTGACTTA-GCATAC-
644 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
1004786 GAGTTCATTCCCAGTCTAAGC-TA-GAGTTCATTCCATGTCGATT--ACC-GGGTT--G-CAGCA
709 GAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCA-GTCGATTCCACCAGGGTTGCGACAGCA
1004843 CAT-CTGGG-T--AGCATGTGCTGGT---GCATTTTTC-TTGC-GGGGCACCATCGTCAGAGCAT
773 CATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGCTGGGGCACCATC--C--AG-AT
* * * * * *
1004899 AAC-GAAACTGAACTCACA-TTGGGGTTCGTGATCGGGGGTCAGGGGGT
833 --CGGAGAC-G-ACT-ACAGATCGGG-T-GAGATC-GGGG---GGTGGC
* *
1004946 TGTGCGCACATCGATGTGC-ATGGGTGC-GGTACTATTG-CCTTATA-TGGCCCCTTTATCACCT
1 TGTGCGCACAT-GATGTGCGATGGGTGCTGGTACT-TGGCCCTTATATTGGCCCC-CTATC-CCT
* * *
1005007 CATCAAA-CTCGAGAACTCACACCCCTTAAAGAGCATTTAAGATTTTATATGTTTGCTGCCAGTA
62 CATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
1005071 GCCATT-AAGTGT-TGAAATGGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG
127 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * * *
1005133 TTTTTAGCTGAATTTTTTTTTGTATGCCAAAAAAAATACAAGGATCCCATCTACCATGTTTGGGG
192 TTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * *
1005198 CCAAAATTCCTTTCGAAAAAATTTTAAAAAATCTCGAA-CGGAAAAAATTTCAAAAATCATGAAA
256 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAA
1005262 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGCACCATTGTATGAATT
321 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG-ACCATTGTATGAATT
* * * *
1005327 TACAAGCCATAAAAATGGCATTGGCATGGAGAAATATAAAGATGGGCCTAAACCTACCTACCACC
385 TACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
1005392 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CCG--C-C-CGC-C
450 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCTCGCGC
** * * *
1005449 CGCCCGCTTGTTTCG-TCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGCCCG
515 CGCCCGCTCATTTCGATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTG
* * *
1005513 GACCGAGGGTTCCGACAGCA
580 AACCGAGGGTTGCGATAGCA
1005533 CTTGCTAGGC
Statistics
Matches: 1242, Mismatches: 111, Indels: 169
0.82 0.07 0.11
Matches are distributed among these distances:
797 10 0.01
798 4 0.00
799 9 0.01
800 1 0.00
802 12 0.01
803 1 0.00
804 1 0.00
805 6 0.00
806 10 0.01
807 3 0.00
809 5 0.00
810 1 0.00
811 4 0.00
813 1 0.00
814 4 0.00
817 1 0.00
818 8 0.01
819 182 0.15
820 84 0.07
821 66 0.05
822 79 0.06
823 49 0.04
824 61 0.05
825 38 0.03
826 15 0.01
828 5 0.00
829 4 0.00
831 2 0.00
834 6 0.00
835 1 0.00
836 6 0.00
841 4 0.00
842 8 0.01
846 2 0.00
849 1 0.00
850 6 0.00
853 6 0.00
854 1 0.00
855 1 0.00
857 1 0.00
858 1 0.00
859 62 0.05
860 11 0.01
862 1 0.00
865 3 0.00
866 5 0.00
867 1 0.00
868 1 0.00
872 5 0.00
873 150 0.12
874 292 0.24
875 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (870 bp):
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCTCGCGCCGCCCG
CTCATTTCGATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGA
GGGTTGCGATAGCAGGATCGGCAGCACACAGAGGGGGACCCGATCGATCCCGGCTTGCGCATCCC
GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGCATACGAGTTCATTCCAGTCGATTCCACCAGGGTTGCGACAGCACATGCTGG
GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGCTGGGGCACCATCCAGATCGGAGACGACTAC
AGATCGGGTGAGATCGGGGGGTGGC
Found at i:1008166 original size:26 final size:26
Alignment explanation
Indices: 1008136--1008187 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
1008126 GTTGACTTAG
1008136 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
1008162 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
1008188 AATCGGATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:1009060 original size:26 final size:26
Alignment explanation
Indices: 1009030--1009081 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
1009020 GTTGACTTAG
1009030 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1009056 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1009082 AATCGAATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1009953 original size:26 final size:26
Alignment explanation
Indices: 1009917--1009969 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1009907 GTTGACTTAG
* *
1009917 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1009943 GCATACGGAGTTCTTTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1009969 G
1 G
1009970 ATCGAATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1010480 original size:906 final size:904
Alignment explanation
Indices: 1005477--1013386 Score: 9510
Period size: 906 Copynumber: 8.8 Consensus size: 904
1005467 GTTGGCTTAG
* * * * * *
1005477 GCATACGAAGTTCATTCCCAGTCTAAGATC-A-GCCCGGACCGAGGGTTCCGACAGCACTTGCTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* * ** * * *
1005540 GGCTCGGGCATGTGGTGGTGCTGCATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGCCGAA
66 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
* * *
1005605 GAACCTGACCGGCGGCATTCGGGTTTCGACGAT---------CGGGGGGTGTGCGCACATGATGT
131 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * * * *
1005661 CCTATGGGAGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACACA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * * *
1005726 CACCCCCTTAAAGAACATTTGAGATTTTATAGGTTTACTGCCAGTAGCCACTAAAGTGTTTGGAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1005791 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGTATTTTTTT
326 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
1005856 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
391 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
1005921 AATTTTAAAAAATCCCAAACCGCAAAATGTTTCG-AAAATCATGAAAAATAGAAAACGAGTCGTC
456 AATTTTAAAAAATCCCGAACCGTAAAAAGTTT-GAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
1005985 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTTCAAGCCATATAAATGG
520 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
1006050 CGTTGGCAAACAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATGGATCCACGGCTTG
585 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * * *
1006115 CGCATCCCGTCTCTCTGGCTAGCGTAGTGCCCGCCCGCCCTCCCGCCCGCTCGTTTTGTCGGTTG
650 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * *
1006180 GCTTAGGCATTA-GGAGTTCATTCCCAGTCTAAGATCAAACTAGACCAAGGGTTGTGGCAGTAGG
714 GCTTAGGCA-TACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGG
** * * ** *
1006244 ATCAACAGCATGCAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCGGT
778 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* ** * *
1006309 TGAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAA
843 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** ** * *
1006371 GCATACGGAGTTCATTTGCAGTCTAAGATC-A-GACTAGACCGAGGGTTGTGGTAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* * * *
1006434 GGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTTGTCAGGGCACCATCG-C----CA------GA
66 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
* * * *
1006488 GAACCTGATCGGCGGCATTGGGGTTCCGACGGTC-GGGGGG-CTGGGGGTGTGCGCACATGATGT
131 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
1006551 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1006616 CACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1006681 TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
326 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * **
1006746 GTGCATGCCAACAAAAATACATGGATCACGTTTGCCAAGTTTGATGCCAAAACTCCTTCC-AAAA
391 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * *
1006810 AATTAAAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
456 AATT-TTAAAAAATCCCGAACCGTAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
1006875 TCGCCATGAAACTTCACGTGAAGGCTTACGGGACCATTGTATGAATTTAAAAGCCATAAAAATTG
520 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
1006940 CATTGGCACGTAAAAATATGAA-ATGTGCATAAACACACCTACCACCTTATCGATACACGGCTTG
585 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * *
1007004 CACATCCCATCTCTCTGGTCGGGGTAGAGCCGCCC-GCCG--CGCCCGCTCATTTCATCGGTTGG
650 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * **
1007066 CTTAGGCATACGGAGTT-ATTCCCAGTCTAAGATTAGACCGGACAGA-GGTTGCGATAGCAGGGA
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCA-GGA
* * * * * * *
1007129 TCTGTAGCATGCA-AAGGGGACCCGACCGATCGCCTGGCTTGCGC-TCCCTCCCCTCTGGGCCGG
779 TCGGCAGCACGCAGAGGGGGACCCGATCGATC-CCCGGCTTGCGCATCCCGCCCCTCT-GGCCGG
*
1007192 CT-AACGCCCG-ACTGCTCGTTTCATGGGTTGAC-TAGGCATACGGAGTTC-TTCCCAGTCTAA
842 CTGAGCGCCCGCAC-GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
1007252 GCATATAGAGTT--TGTCCCAGTCTAAGATC--GGACCAGACCGGATGGTTGGCAGCAGCATATG
1 GCATACGGAGTTCAT-TCCCAGTCTAAGATCGAGGACCGGACC-GAGGGTT-GCGGCAGCACATG
* * * * * *
1007313 CTGGGGTTTGGGCCTAGTGCTGGTGCCGTATTTTTCTTCATCAGGGCACCATCGGTCGGAGCATC
63 CT-GGGCTCGGGCAT-GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-GTCGGAGCATC
* * * ** *
1007378 ATCGGAGAACCTGGCTGGTGCCA-TGGGGTTTCCGACGATCTTGGGGGGGCCGGGGGGTGTGCGC
125 GTCGGAGAACCTGACCGACGGCATTGGGG-TTCCGACGATC--GGGGGGGCCGGGGGGTGTGCGC
* *
1007442 ACATGATGTGCGAT-GGTGCTGGTACTT-GCCCTTATATTGGCCCCCTACCCCTCATCAATCCTC
187 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
1007505 AAGACCTCACACCCCCTTAAAGAGCA-TTGAGATTTTACAGGTTTGGCTGGCCAGTAGCCATTAA
252 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-GCT-GCCAGTAGCCATTAA
* * * * *
1007569 AGCGATTTGAAATGGGGACA-TCTTTTTCAAATGGTCAGAAAATCATGTACAAGTTCGAGTTTTT
315 AGTG-TCTGAAATGGGGACACT-TTTTTCAAATGGTCACAAAATCTTGTAC-ACTTCGAGTTTTT
* * * **
1007633 AGCTGAA-TTTTTTGTGCATGCCAACAATAATACAAGGATCATGTCTACCGAGTTTGATGCCAAA
377 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * ** * * * *
1007697 ACTACTGCCAAAAAAATTTT-AAAAATCTCAAAACTGCAAAAGGTTTTG-AAAATCATG-AAAAT
442 ACTCCTTCCGAAAAAATTTTAAAAAATC-CCGAACCGTAAAAAG-TTTGAAAAATCGTGAAAAAT
*
1007759 AGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
505 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
1007824 AAG-CATAAAAATTGCATTGGCATGCA-A-AAATATCAAGATGTGACTAAACCCACCTACCACCC
570 AAGCCATAAAAATGGCATTGGCA--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
1007886 TATCGATCCATGGCTTGCGCATTCCGTCTCTCTGGCCGACGTAGTGCC-CGCACGCC-CACCGCC
633 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCAC-CCGC-CCGCC
* * * * * * * ** *
1007949 TGCTCGTTT-GTCGGTTGGCTGAGGCATAC-GAGCTCATTCCTAGTCTAACAACGGACCCAGATC
696 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACC
* * * * * * *
1008012 GAGTGCG-TGT-AC-GCATGATCGGTTAGCACATCA-AGGCGGGAACCCGACCAATCCCCGACTT
760 GAG-G-GTTGTGGCAGCAGGATCGG-CAGCAC-GCAGAGG-GGG-ACCCGATCGATCCCCG---G
* * *
1008073 CTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCACACGTTCGTTTCATGGGTTGACTTAGGC
816 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
*
1008138 ATACGGAGTTCATTCCCAGTATAA
881 ATACGGAGTTCATTCCCAGTCTAA
* * ** * * *
1008162 GCATACGGAGTTCATTCCCAGTATAAAATC--GGATTGGACCGAGGGATGCAGTAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* * * * * *
1008225 GGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCTTTGCCGGA
66 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
* * * *
1008290 GAACCTGATCGACGGAATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCACACATGATG
131 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
* * * *
1008355 TGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCACCCTATCCTTCATCAAACCTCAAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * *
1008420 ACACTCCATTAAAAAGCATTTGAGATTTTATAGG-TT--TG-C--T-GCCATTAAAATGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
1008478 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTGTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
1008543 TGTGCATGCCAAAAAAAATACTAGGATCACGTCTACCAAGTTTGGGGCCAGAAA-TCCTACCGAA
390 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCGAA
*
1008607 AAAATTTTAAAAAATGCCGAACCGTAAAAAGTTTTG-AAAATCGTGAAAAATAGAAAACGAGTCG
454 AAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTGAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
1008671 TCTTGCCATGAAACTTCACGTGACGCCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAAT
518 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
**
1008736 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
583 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * ** * *
1008801 TGCGCTTCCAGTCTCTCTGGCCGACGTAGTGGCCGCCCGCCCGCCTACCCACTCGTTTCATCGG-
648 TGCGCATCCCGTCTCTCTGGCCGGCGTAGT-GCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGT
* ** * * *
1008865 -GACTTAGGCATACGGAGTT-ATTCCCAGTCTAAGATTGGA-TCGGAACGAGGGTTGCGGTAGCA
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGTGGCAGCA
* * * * * *
1008927 AGATCGACAGCATGCAGAAGGGGACCCG-TCCGAACCCCGGCTTGTGCATCCCGCCCCTCTGGCC
776 GGATCGGCAGCACGCAGAGGGGGACCCGAT-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
1008991 AGCTGAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1009056 GCATACGGAGTTCATTCCCAGTCTAAAATCGA--ATCGGACCGAGGGATGCGACAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
**
1009119 GGCTCGGGCATGTGCTGGTGCCGCATTTTT-TTCGTCGGGGCACCATCACCGGAGCATCGTCGGA
66 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
* * * * * * *
1009183 GAACCTGACTGACGGCAGTGGGGTT-TGGCGAT-TGGGGGACCGGGGGGTGTGCGCACATGAAGT
131 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
1009246 GTGATGGGTGCTGGTA-------C-----TTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
1009299 CACCCCCTTAAAGGGCATTTGTGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCTGAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
1009364 TGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCAAG-TTGTAGCTGAATTTTTTT
326 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
1009428 GTGCGTGCCAACAAAACTATAAGGATCATGTCTACCAAGTTTGGGGCCGAAACTCCTTCTGAAAA
391 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
1009493 AATTTTAAAAAATCCCGAGCCGCATAAAGTTTCG-AAAATCATGAAAAATAGAAAACGAGTCATC
456 AATTTTAAAAAATCCCGAACCGTAAAAAGTTT-GAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
1009557 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAGTTTACAAGCCAAAAAAATGG
520 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
1009622 CATTGGCACATAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
585 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * *
1009687 CGTATCTCGTCACTTTGGTCGGCGTAGTGCCAGCCCACTCGCCCGCCCGCTCATTTCGTCGGCTG
650 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-GCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTG
* *
1009752 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAACCGAGGGTTGTGGCAGTAGGA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGA
* * * ** * * *
1009817 TCGGTAGCACACAGAGGGGGACCC-AGTCGATCCCCGACTTGCGTTTTCTGCCCCTCTGACCGGC
779 TCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
1009881 TGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
843 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1009943 GCATACGGAGTTCTTTCCCAATCTAAGATCGAATTGGACCGGACCGAGGGTTGCGGTAGCACATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-A--GGACCGGACCGAGGGTTGCGGCAGCACATG
* * * * *
1010008 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCATCGAAGCATTGTC
63 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
1010073 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
128 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
* * *
1010138 TATGTGATGGGTGCTGGTACTTGGCCGTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
1010202 TCACA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCACTAAAGTGTCTG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
1010266 AAATGGGGATACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
1010331 TTTATGCATGCCAACAAAAATACAAGCATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
388 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* *
1010396 AAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGCCG
453 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTCG
* * * * * ** *
1010461 CCTTCCCATGAAACTTCACGTGAAGCCTTAAGGGAGCATTGTATGAATTTACACGGGACAAAAAT
518 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
1010526 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCT
583 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
1010591 TGTGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCCCGCCCTCTCGTTCGCTCGTTTCGT
648 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCACCCGCCCGC-C---CGCTCGTTTCGT
* * *
1010656 CGGCTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCAAAGGTTGTGGCA
708 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCA
* * *
1010721 CCAGGATCGGCAGGC-TGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTG
773 GCAGGATCGGCA-GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
** * * * **
1010785 GCCGGCTGAGCAACCGCACGTTCATTTCATGGGTTGAGTTAGGCATACGGAGTTCATTCTAAGTC
837 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
1010850 TAA
902 TAA
* * *
1010853 GCATACGGAGTTCATTCCCAGTCTAAGAT-G-GGACCAGACCGAGGGTTACGGTAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* * * * *
1010916 GGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCAGAGCATCATCGGA
66 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
* * * * *
1010981 GAATCTGATCGACAGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGTGGTATGCGCACATGAT
131 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGG-GGTGTGCGCACATGAT
1011046 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
1011111 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
1011175 AATGGGGACACTTTTTTCTAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
1011240 TTTTGCATGCCAA-AAAAATTACAAGGATCACGTCTACCAAGTTTGGGCCCAAAATTCCTTCCG-
389 TTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * * *
1011303 AAAATTTTGTTAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
453 AAAAATTT-TAAAAAATCCCGAACCGTAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTC
*
1011368 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAA
517 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
1011433 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
582 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
*
1011498 TTGCGCATCCCGTCTCTCT-GCCAGGCGTA---------A--TGCCCGCCCGCTCGTTTCGTCGG
647 TTGCGCATCCCGTCTCTCTGGCC-GGCGTAGTGCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGG
* * * *
1011551 TTGGTTTAGGCATACCGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCAAGGGTTTTGGCAGC
711 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGTGGCAGC
* * * * * ** *
1011615 AGGATCAGCAGCACGCAAAGGGGGTCCTGACCGATCCGTGGCTTGCGCATCCCGCCCCTCTAGCC
775 AGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
1011680 GACTGAGTGCCCACACGCTCATTT--T--G-TGAC-T-----T---GA---C-TT---AG-----
840 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1011719 GCATACGGAGTTCATTCCCAGTGTAAGAT-G-GGTCCGGATCGAGGGTTGTGGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* * * * * ** *
1011782 GGCTCGGGCTTGTGCTGGTGCCGCATTTTTCATCGCCAGGGCATCATCACCGGAGCATCGTCAGA
66 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
* * **
1011847 GAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGGGGTCGGGTGGGGTGTAAGCACATGAT
131 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CCGG-GGGGTGTGCGCACATGAT
*
1011912 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
1011977 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
1012042 AATGGGGACACTTTTTTCAAACGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
1012107 TTGTGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCAAA
389 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * ** * *
1012172 AAAATTTTTAAAAATCCCAAACCGTAAAAACATTAAAAAATCGTGAAAAATAGAAAACCAGTCGT
454 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * *
1012237 CTTGCCATGAAACTTAACGTGAAGGCTTAAGGGTCCATTGTATGAATTTAGAAGTCATAAAAATG
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* ***
1012302 GCATTAGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
584 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
1012367 GCGTATCCCGTCTCTCTAGCCGACGTAGT---GCCCGCCCGCCCGTCCGCTTGTTTCGTCGGTTG
649 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
1012429 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTATGACAGTAGGA
714 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGA
* * ** * * * *
1012494 TCGACAGCACGTAGAGGAAGACCCGATCGATCCCTGGCTTGCGCTTCCCGCGCCTCTAGCCGGCT
779 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
1012559 GGGCGCCCGCACGCTCGTTCCGTGGGTTGACTTA-GCGATACGGAGTTCATTCCCAGTCTAA
844 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC-ATACGGAGTTCATTCCCAGTCTAA
* * * * * *
1012620 GCATACGGAGTTTATTCACAGTCTAAGATCGGATCGGACCAGACCGGGGGTTGCGACAGCACAAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GA--GGACCGGACCGAGGGTTGCGGCAGCACATG
* * * *
1012685 CTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCCTCGCCGGGGCACCATCGTCGGAGCATCGCC
63 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* ** * * *
1012750 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGAGGTCGGGGGGTGTGCACACATGA
128 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGA
*
1012815 TGTGCGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
1012880 TCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CTTCTAAAGTGTCT
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT-TAAAGTGTCT
* * * *
1012944 GAAATGGGGACACTTTTTTCAAATGGTGACAAAATCTTGAACACTTAGAGTTTTTAGTTGAATTT
322 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
1013009 TTTTGTGCATGCCAACATAAATACAAGAATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCCA
387 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
1013074 AAAAAATTTTAAAACATCCCGAACCGTAAAAAGTTTCAAAAATCGTGCAAAATAGAAAATGAGTC
452 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTC
* *
1013139 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAA
517 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
1013204 TGGCATTGGCACA-CGAAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
582 TGGCATTGGCACATAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * * *
1013268 CTT-CGCATCCCATCTCTCTGGTCGGCATAGTGCCTGCTCACCCACCCGCCCGTTCATTTCGTCA
646 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-GCCCACCCGCCCGCCCGCTCGTTTCGTCG
* *
1013332 GTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGG
710 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGG
1013387 ATGCAGGGAG
Statistics
Matches: 6033, Mismatches: 780, Indels: 393
0.84 0.11 0.05
Matches are distributed among these distances:
866 231 0.04
867 369 0.06
868 15 0.00
871 2 0.00
874 2 0.00
875 146 0.02
877 1 0.00
878 61 0.01
879 4 0.00
880 25 0.00
881 31 0.01
882 29 0.00
883 109 0.02
884 376 0.06
885 97 0.02
886 21 0.00
887 173 0.03
888 10 0.00
889 70 0.01
890 418 0.07
891 10 0.00
892 203 0.03
893 106 0.02
894 264 0.04
895 49 0.01
896 31 0.01
897 49 0.01
898 224 0.04
899 277 0.05
900 275 0.05
901 112 0.02
902 34 0.01
903 32 0.01
904 447 0.07
905 265 0.04
906 478 0.08
907 247 0.04
908 451 0.07
909 32 0.01
910 233 0.04
911 23 0.00
912 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (904 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
AATTTTAAAAAATCCCGAACCGTAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGCAGCAGGATC
GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1010857 original size:26 final size:26
Alignment explanation
Indices: 1010827--1010879 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1010817 GTTGAGTTAG
*
1010827 GCATACGGAGTTCATTCTAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
1010853 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
1010879 G
1 G
1010880 ATGGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:1012625 original size:26 final size:26
Alignment explanation
Indices: 1012596--1012646 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1012586 TGACTTAGCG
*
1012596 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCACAGTCTAAGC
*
1012622 ATACGGAGTTTATTCACAGTCTAAG
1 ATACGGAGTTCATTCACAGTCTAAG
1012647 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCACAGTCTAAGC
Found at i:1015072 original size:26 final size:26
Alignment explanation
Indices: 1015036--1015088 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1015026 GTTGACTTAG
*
1015036 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1015062 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1015088 G
1 G
1015089 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1015479 original size:892 final size:887
Alignment explanation
Indices: 1013393--1025780 Score: 6174
Period size: 891 Copynumber: 13.7 Consensus size: 887
1013383 AGGGATGCAG
* * * * * *
1013393 GGAGAACCTGACCGGTGGCAATGGTGTTCCGGCGATCGGGGAGCTGGGGGGGTGTGCGCACATGA
1 GGAGAACCTGACCAGCGGCATTGG-GTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGA
* * *
1013458 AGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAAC
65 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
1013523 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTTTG
130 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* ** *
1013588 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAAAGTTTTTAGCTGAATATT
195 AAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
1013653 TTTGCGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGTCAAAACTCCTTACGA
260 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* * *
1013718 AAAAATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTC
325 AAAAATTTTAAAAAATCCT-GAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
* *
1013782 GTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAA
389 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * *
1013847 TGGCATTGGCATGTAGAAATATGACGATGTGGCTAAACCCACGTACCATCCTATCAATCCACGAC
454 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
* * * * *
1013912 ATGCGCATCCCGTCTCTCTAGCCGGCGTAGT----GCCCGCCCGCCCACTCG-TTCGTCAGTTGG
519 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* *
1013972 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACCGAGGGTTGTGGCAGCAGGAT
584 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * * *
1014037 CAGCAACACATAGAGGGGGACCCGGCCGATGCCCGGCTTGCGCATCTCGCCCCTCTGGCCGACAG
649 CGGCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* * * * * *
1014102 AGCGCCTGCAAGCTCGTTTCATGAGTTGACTCAGGCATACGGAGGTCATTCCCAGTCTAAGCATA
714 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * *
1014167 CGGAGTTCATTCCCAGTCGAACA--TGGGACTGGACCA-AGGGTTGCGGCAGCACATGCTGGGCT
779 CAGAGTTCATTCCCAGTCTAAGATCTCGGA-TGGA-CAGAGGGTTGCGGCAGCACATGCTGGGC-
* * * *
1014229 TGGGCATGTGCTGGTGCCGCATTTTTCATCACCGGGGCACCATCACTGGAGCAAC
841 TAGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCAT--C----GC--C
* * * * *
1014284 GCCAGAGAACTTGACCAACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG-GCGCTCAC
1 G---GAGAACCTGACCAGCGGCATT-GGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTG--CGC
* * * * *
1014348 ACATGATGCGCAATGGTTTCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
59 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
1014413 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
124 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
1014478 TGTCTGAAATAGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
189 TGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
1014543 -ATTTTTTTGCT-CATGTCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAAATC
254 AATTTTTTTG-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATC
*
1014606 CTTCCAAAAAAATTTTAAAAAATCCTGAACCACAAAACA-TTTTGAAAATCGTGAAAAATAGAAA
318 CTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAA-AGTTTTGAAAATCGTGAAAAATAGAAA
* * *
1014670 ACAAGTCATCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
382 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
1014735 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATAGAT
447 ATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * *
1014800 CCATGACTTGTGCATCCCGTCTCTCTAGCCGACATAGTGCCCGCCCGCCCGCCCGCTCGTTTCGT
512 CCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * * * *
1014865 CAGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGACCGAGGGTTACGGTA
577 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCA
* * * * * ** *
1014930 GCAGGATTGGTAGCACACAGAGGGGGACCCGACCGATCCCCGACTTGTGTTTCCCACCCCTCTGG
642 GCAGGATCGGCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
1014995 CCGACTGAACGCCCACAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
707 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
1015060 AAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGGACAGAGGGTTGCGGCAGCACA
772 AAGCATACAGAGTTCATTCCCAGTCTAAGATC---TCGGAT-GGACAGAGGGTTGCGGCAGCACA
* * * * * *
1015125 TGCTAGGCTTGGACATGTACTAGTGTCGCATTTTTCTTCGCCAGGACACCATCGCC
833 TGCTGGGCTAGG-CATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCATCGCC
* * ** * *
1015181 GGAGAACCTGATC-GCGGCATTGAGGTTTCGACGATCGAGGCAGTCGGGGGGGTGTACGCACATG
1 GGAGAACCTGACCAGCGGCATTG-GGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATG
*
1015245 ATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
64 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
1015310 CTCACACCTCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CAGTTAAAGTGTC
129 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTC
* * * ***
1015374 TGAAATGGGGATACCTTTTTCAGATGGTCACAAAATCTTGTACACTTTGAAAATTTAGCTGAATT
193 TGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
1015439 TTTTT-TGCATCCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAATTCCTTCC
258 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
1015503 GAAAAAATTTTAAAAAATCCTGAA-CAGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
323 GAAAAAATTTTAAAAAATCCTGAACCA-CAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
* * *
1015567 TCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACATGCCATAAA
387 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
1015632 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
452 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
1015697 ACTTGCGCATCCCGTCTCTCTCGTCGGCGTAAT--------GCCCGCCCGCTCTTTTCGTCGGTT
517 ACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * ** ** * *
1015754 GGCTTAGGCATACGGAGTTCATTCCCAATCTTAGATTGGACTAGACCGAGGGTTGCGGTAGTAGG
582 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGG
* ** *
1015819 ATCGGCAGCACATAGAGGGGGACCCCACCGATCAGCGGCTTACGCATCCCGCCCCTCTGGCCCG-
647 ATCGGCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CCGA
* **
1015883 CTGAGCGCCCGCACGTTCGTTTCAAGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
711 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *
1015948 ATAC-GAAGTTCATTCCTAGTCTAAGATCT--GATTGGACCGAGGGTTGCGGCAGCACATGCTGG
776 ATACAG-AGTTCATTCCCAGTCTAAGATCTCGGA-TGGACAGAGGGTTGCGGCAGCACATGCTGG
* * * *
1016010 GCTCGGGCATGTGCTGGTGTCGCATTTCTCTTCGTCGGGGCACCATCACC
839 GCT-AGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCATCGCC
* * * * * * *
1016060 GAAAAACCTGA-CTGACGGAATTGGGGTACC-AGTGATCGGGGGGGGCCGGGGGGGTGTGCACAC
1 GGAGAACCTGACCAG-CGGCATT-GGGTTCCGA-CGATC--GGGGGGCCGGGGGGGTGTGCGCAC
*
1016123 ATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
61 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * * * *
1016188 GAACTTATACCCTCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTG
126 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
1016253 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
191 TCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * * * * *
1016318 TTTTTTTGTGGAAGCTAACAAAAATACGAGGATCACGTCTACCAAGTTTGCGGCTAAAACTTCTT
256 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT
* * * * *
1016383 -CGAAAAAA-TTTAAACAAATCTTGAATCGCAAAAAGTTTT-AAGAATCATGAAAAATAGAAAAT
321 CCGAAAAAATTTTAAA-AAATCCTGAACCACAAAAAGTTTTGAA-AATCGTGAAAAATAGAAAAC
*
1016445 GAGTCATCTTGCCATG-AA----ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
384 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
*
1016505 AAAAATGGCATCGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
449 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
1016570 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCG
514 ACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * ** * *
1016635 GTTGGCTTGGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAAGGTTGCAGCAGC
579 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGC
* *
1016700 AGGATCGGCA--ACATGCAGAGGGGCACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGG
644 AGGATCGGCAGCACAT--AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
1016763 CCGGCTGAGCGCCCGCGCGCTTGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAG--T
707 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* *
1016826 ---C-T--A-AG---------A-TC--AGA-C-CGGAT---C-GAGGGTTACAGCAGCACATGCT
772 AAGCATACAGAGTTCATTCCCAGTCTAAGATCTCGGATGGACAGAGGGTTGCGGCAGCACATGCT
*** * *
1016866 GGGCTCAGGCATGTGCTAGAAAT-GCATTTTTCTTCGTCGGGGCACCATCGTC
837 GGGCT-AGGCATGTGCT-GGTGTCGCATTTTTCTTCGCCGGGGCACCATCGCC
* * * *
1016918 GGAGAAACTGACCGGCGGCATTGGGGTTCCGACAATCGGGGGGCCCGGGGGGTGTGCGCACATGA
1 GGAGAACCTGACCAGCGGCATT-GGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGA
* * * * *
1016983 TATGCAATGGGTGCTGGTACATGGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCAAGAAC
65 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * *
1017048 TTACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCAATAAAGTGTCTG
130 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
1017113 AAATGGGGACA-CTTTTCTCAAATGGTCACACAATCTTGTACAGTTCGAGTTTTTAGTTGAATTT
195 AAATGGGGACACCTTTT-TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
** * *
1017177 TTTTGTGCATGTGGAA-AAAAATACAGGGATCACGTCCACCAAGTTTGGGGCCAAAAATCCTTCC
259 TTTTGTGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
* ** *
1017241 GAAAAAATTTAAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
323 GAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
*
1017306 CGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT----
388 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
1017367 A----A-----AC-------------------CC---A-CCA---ACCACCCTATCGAGCCACGG
453 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
* * * *
1017397 CTTGCTCATCCCGTCTGTCTGGCCGACGTAGTTTTCGCCCGACTGTCCGCCCGTCTGCTCGTTTC
518 CTTGCGCATCCCGTCTCTCTGGCCGACGTAG---T-GCCCG-C---CCGCCCGCCCGCTCGTTTC
* * * *
1017462 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCAG
575 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
* * * * * *
1017527 CAACAGAATCGGTAGCACATAGAGGGGGACCCGGCCAATCCCTGGCTTGCGCATCCCGCCCCTCT
640 CAGCAGGATCGGCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
** ** * * * * *
1017592 GATCGGTTGAGTGCCCGCACGCTCTTTTCGTGGATTGACTTAGGCATACGAAGTTCATTCCTAGT
705 GGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* *
1017657 CTAAGCATA-AGGAGTTCATTCCCAGTTTAAGAT-T-GGATTGGACCGAGGGTTGCGGCAGCACA
770 CTAAGCATACA-GAGTTCATTCCCAGTCTAAGATCTCGGA-TGGACAGAGGGTTGCGGCAGCACA
* * *
1017719 TGCTGGGCTCAGGCATGTGCTGGTGCCGGATTTTTCTTTGCCGGGGCACCATCGTCGAAGCATCG
833 TGCTGGGCT-AGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGG---CA----C----CATCG
1017784 CC
886 CC
** *
1017786 GGAGAACCTGACC-GACGGCATTGGTGTTCCGGTGATCGGGGGGCCGGTGGGGGGTTTGCGCACA
1 GGAGAACCTGACCAG-CGGCATTGG-GTTCCGACGATCGGGGGGCC-G-GGGGGGTGTGCGCACA
* *
1017850 TAATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
62 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
1017915 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
127 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
1017980 CTGAAATGGGGACACTTTTTTCAAACGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
192 CTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
** **
1018045 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCAGGGTGAAAAATCCTTC
257 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC
* * * *** * *
1018110 TGAAAAAATTTTAAAAAATCCCGATCTGTAAAAACTTTTGAAAATCGTGAAAAGTAGAAAACGAG
322 CGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
*
1018175 TCGTCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
387 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
1018240 AATGGCATTGGCAAGCAGAAATATGAAGATGAGCCTAAACTCACCTACCACCCTATCGATCCACG
452 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
*
1018305 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTC
517 ACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTTCGTC
* *
1018370 GGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAG
578 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAG
* * ** * ** ** **** * *
1018435 CA-CATGCTGGGCTCGGGCAT-GTGCTGGTGCCGCATTTTTCTTCGCCGG--GGCACCATCATCG
643 CAGGAT-C--GGC-AGCACATAGAGGGGGACCCG-ACCGATC--C-CCGGCTTGC-GCATC--C-
* ** * * * * * * **** ** *
1018496 GAGAACCTGACCGGCGGCATTG-GGGTTCCG-ACGATCGAGGGGGCTGGGGGGGCTGT-GCGCAC
696 -CGCCCCT--CTGGCCG-ACTGAGCG-CCCGCACGCTCG-TTTCG-TGGGTTGACT-TAG-G--C
* * * ** * ** ** ** ** * *
1018558 ATGATGTAAGATGGTTGCTGGTACTTGGCCCTTATATTG-GCCCCCTATCCC--TCATCAA-ACC
750 AT-ACG-GAGTTCATTCCCAGT-CTAAG--C--ATACAGAG-TTCAT-TCCCAGTC-T-AAGATC
* * * ***** *** * ** *** * ** *
1018619 TTGAAAACT-CACACCCCATTAAAG-AG--CAT-TTGAGATTTTACAGGTTTGCTGCCAGTAGCC
804 TCG--GA-TGGACAGAGGGTTGCGGCAGCACATGCTG-GGCTAGGCA--TGTGCTG-GTGTCG-C
* ***** ** ***
1018679 ATTAAAGTGTCTGAAATGGGGACACTTTTTTC
861 ATT----TTTCTTCGCCGGGG-CACCATCGCC
** *** * * * * ****** ** * * ****
1018711 --A-AA--TGGTCA-CAAAATCT-TG-TAC-AC-TTC-GAGTTTTTAGCTGAT-TTCTTTTATGC
1 GGAGAACCTGACCAGCGGCAT-TGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATG-
* * **** * * * * ** * *** * **
1018764 ATG-CCAAAAAAAAATACAAGGATCAC--GTCTACAAAGT-TTGAGGCCAAAACTCCTTCCGAAA
64 ATGTGC---GATGGGTGC-TGG-T-ACTTGGC-CCTTA-TATTG-GCCCCCTA-TCCCT-C-ATC
** ** * * ** * * * * *** *
1018825 AAATTTTAAAAAAATC-C-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG-T
117 AAA-CCTCGAGAACTCACAC-CCCCTTAAAGAG---C----AT-TTG--AGATTTTACA-G-GTT
* * * *** * * * * *
1018887 CGTCTTGCCATGAAACTTCACGGGAAG-G-CT-TAA--GGGAC-CATTGTAT-GAAT--TTAC--
168 TG-C-TGCCA-GTAGC--CA-TTAAAGTGTCTGAAATGGGGACACCTT-TTTCAAATGGTCACAA
* ** * ** * * * ** * * *** ** ** * *
1018941 AAGC-CATAAAAATGGCA-TTGTCATGAAGAAATATGAAGATG--TGCCTAAACCCACCTACCAC
226 AATCTTGTACACTTCG-AGTTTTTA-GCTGAATTTTTTTG-TGCATGCC--AACAAAAATACAAG
** * * * * **** * ** * * **** ****
1019002 CCT-A--TCGATCCACGGCTT-GTG-CATCCCGTCTCTCTGGTCGGCATAGTGCCCACCCGTCC-
286 GATCACGTCTA-CCA-AGTTTGGGGCCA-AAAATC-CT-T--CCGAAAAAATTTTAAAAAATCCT
* * ***** * **** ** * * * ** *
1019061 G-CCCGCCTGCTCGTTTCGTCGGTCG-G---CTTAGGCATACGGAGT--TCATTCCCAGTCTAAG
344 GAACC-ACAAAAAGTTTTGAAAATCGTGAAAAATA-GAAAAC-GAGTCGTC-TTGCCA-TGAAAC
* ** * * * * * * ** * *
1019119 ATCGGACCAGACCGAGGGTTACGGTAGCACA-TGCTAGGCTCGGGCATGTGCTGGTGCC--ACAT
404 TTC--ACGTGA---AGGCTTAAGGGA-C-CATTG-TA---T---GAATTTAC--AAGCCATAAAA
* ** * * * ** * * * * * * *
1019181 TTTTC-TTCGC-CAG-GGCACCATCGCCAGAGCAT-CGCCGGAGAACCTGATCGGTAGCA--TTG
453 ATGGCATTGGCAC-GTAGAAATAT-G--A-AG-ATGTGCC-TA-AACC-CA-C-CTACCACCCTA
** * * * *** * **** * * * **** ** **
1019240 GGGTTCCGACGA-TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTTCTGGTACTT
507 TCGATCC-ACGACT-TGCGCATCCCGTCTCTCTG-GC-C--GACGT-AG-TGCCCGCCCG--CCC
* ** * * ** ** * * * ** ** ** **
1019304 GGCC-CTTATATTGGCCACCTATCCCTCA-TCACACCTTGGGAACTCACAACCCCTTAAAGAGCA
562 GCCCGCTCGT-TTCGTC-GGT-TGGCTTAGGCATA-C---GGAGTTCA-TTCCCAGTCTA-AG-A
* **** * * * * *** ** * **
1019367 TTTGAGATTTTA-C-AGGTTTGCTGCCAGTAGCCAT-TAAAGTGTC-TGAAATTGGGA--C-A-C
617 --TCAGACCGGACCGAGGGTTGC-GGCAGCAG-GATCGGCAG-CACAT-AGAGGGGGACCCGACC
** *** *** ***** ** ***** ** ** *
1019424 TTTTTTC-AAATG-GTCAT--AAAATCT-TGTAC-ACTTCGAGTTTTTAGCTA-AATTTTTTTGT
676 GATCCCCGGCTTGCG-CATCCCGCCCCTCTGGCCGAC-T-GAG-CGCCCGC-ACGCTCGTTTCGT
** * ** *** * * * *** *
1019482 -GCATGCCAAAAAAAATACAAGGA--TCATGTCTACCAAGT-TTAGCA-CCAAAACACCTTCCGA
736 GGGTTGAC-TTAGGCATAC--GGAGTTCAT-TC--CC-AGTCTAAGCATACAGAGTTCATTCC--
* * * * * * * ** * * ** ***** *** *
1019542 AAAAGTTGTAAAAAATCCCGAACCGTA-A-AAAGTTTC--AAAAATCATG-AAAAATAAAAAACG
792 --CAG-TCT--AAGATCTCGGA-TGGACAGAGGGTTGCGGCAGCA-CATGCTGGGCT-AGGCATG
* * * **** * *** **
1019602 AG-TCGTCTTAC-CATGAAACTTC-ACGTGATGGCTTAAGGGACC
849 TGCTGGT-GT-CGCATTTTTCTTCGCCG-G--GGCACCATCG-CC
* * * * ** * * ** * * * ***
1019644 ATTGTATGAA-TTTACAAGCCAAAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAA
1 ---GGA-GAACCTGACCAG-C--------GGCATTGGGTTCCGACGAT-CG--G-GGGGCC-GGG
***** * *** * ** * * **
1019708 CCCACGTAC-CACCCTATCGATCAACGGCTTGCGCGT-CCCGTCCTTTTGGCCGACGTAGTGACC
48 GGGGTGTGCGCA--C-AT-GATGTGC-G-ATG-G-GTGCTGGTAC--TTGGCC--CTTA-T-ATT
* * * * ** * ** * **
1019771 GCCCGCCGTCCGCTTGTTTCGTCGGAGTTGATTCCCAGTCTAAGCATACGGAGGTCATTCCCAGT
99 G---GCC--CC-C-T-ATCCCTC--A--TCA-AACC--TC-GAG-A-ACTCA---CA-CCCCCTT
** * * * ** * *** *
1019836 CTA-AG-A-TCGAAACTGGACCGAGGGTTGTGGTAGCACATGCTGAGCTCAGGCATGTG-CTG--
142 AAAGAGCATTTGAGATTTTA-C-A-GGTT-TGCT-GC-CA-G-T-AGC-CATTAAAGTGTCTGAA
* ** ** * *** * * *** ** ** ** * *
1019895 GTGCTG-CATTTTTCTTTACCGGGGCACCATCGCCAG-AGCATCGCCGGAGAACTTGACCGGCAG
197 ATGGGGACACCTTT-TTCAAATGGTCACAAAATCTTGTA-CA-CTTC-GAG-TTTTTA---GCTG
* * ** * ******** * * * ** * **
1019958 CATTGGGGTTCCGACGATCAGGGGTGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT-GCTG
254 AATT---TTTTTG-TG--CA----TGCC-AACAAAAAT--ACA-AGGA--T-C-ACGTCTACCAA
* * * * ** **** ** * ** ** ***
1020022 GTACTT-GGCCCTTATATTGGCC--CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCA---
301 GT--TTGGGGCC-AAAAAT--CCTTCCGAAAAAATTTTAAAAAATCCTGAAC-CACA-AAAAGTT
* * *** * *** * * * * * * *
1020081 TT-AAAGAGCATTTGAGATTTTACA-G-GT-TTGC-TGCCA-GTAGC--CA-TTAAAGTGTTTGA
359 TTGAAA-ATCGTGAAAAATAGAAAACGAGTCGT-CTTGCCATGAAACTTCACGTGAAG-GCTT--
* * * ** * **** **
1020137 AATAGGGA-CACTTTTTTGAAATGGT-C-A--CA-AAATCTTGTACACTTCGAGTTTTTAGCTGA
419 -A-AGGGACCA-TTGTATG-AAT-TTACAAGCCATAAA-AATG-GCA-TT-G-GCACGTAG-AAA
* **** ** ** * *** * ** * * ** ***
1020196 TTTCTTTTATGCATGCC-AAA-AAAAATACAAGGATCA-CG-TCTAAAAAGTT-TG-AGGCCAAA
473 TAT-GAAGATG--TGCCTAAACCCACCTACCACCCT-ATCGATC-CACGACTTGCGCATCCCGTC
* * *** * **** **** * * * **
1020255 ACTC-GTTCCGAAAAAATTTTAAAGAAATCCCGAACCG-TAAAAGTTTCAAAAATC-G-TGAAAA
533 TCTCTG-GCCG-ACGTA-GTGCCCGCCCGCCCG-CCCGCT---CGTTTC----GTCGGTTG--GC
* * * * * * ** ** *
1020316 ATA-GAAAAC-GAGTTGTC-TTGCCATGAAACTTCACGGGAATGCTTAAGGGACCATTGTATGAA
585 TTAGGCATACGGAG-T-TCATTCCCA-G--TC-T-A--AG-AT-CAGACCGGACC---G-A-G-G
* * * ** * * * * ** *
1020378 TTTACAAGCCATAAAAATGGCATTGTCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCA
633 GTTGC--GGC---AGCA-GG-ATCGGCA-G--CACATA-G-AG--G-G-------GGACC--CGA
* * * * * * * *
1020443 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCAT-AGTG-CC-CA-AC-CG--T
674 -CCGATC--CCC--GGCTTGCGCATCCCGCCCCTCTGGCCGAC-TGAGCGCCCGCACGCTCGTTT
* *** * * * *** * *
1020501 C--CGCCCG-CCT--GC-T-C-G-TTTC-GTCGGTTGGCTTAGGCATAC-GAAGTTCATTCCCAG
733 CGTGGGTTGACTTAGGCATACGGAGTTCATTC-CCAGTC-TAAGCATACAG-AGTTCATTCCCAG
* * * * * * *
1020555 TCTAAGA--TCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGC
795 TCTAAGATCTCGGA-TGGACAGAGGGTTGCGGCAGCACATGCTGGGCT-AGGCATGTGCTGGTGT
*
1020618 CGCATTTTTCTTCGCCAGGGCACCATCGCCAGAGCATCGTC
858 CGCATTTTTCTTCGCCGGGGCACCAT---C---G---C--C
* * **
1020659 GGAGAACCTGATCGGTAGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATG
1 GGAGAACCTGACCAGCGGCATT-GGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATG
* * * *
1020723 ATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCACACCTTGGGAA
64 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
1020788 CTCACAACCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
129 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
1020853 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTT
194 GAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
*
1020918 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
259 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
* * * ** ** *
1020983 AAAAAGTTGTAAAAAATCCCGAACCGTAAAATA-TTTCAAAAATCGTGAAAAATAAAAAACGAGT
324 AAAAAATTTTAAAAAATCCTGAACCACAAAA-AGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
* * *
1021047 CGTCTTGCCATGAAACTTCACGTTATGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAA
388 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
1021112 ATGGCATTGGCACGCAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGA
453 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
* *
1021177 CTTGCGCATCCCGTCTCTTTGGCCGGCGTAGT--------GCCCGCCCGCTCGTTTCGTCGGTTG
518 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * ** * * *
1021234 GCTTAGGCATACGGAGTTCATTTCCAATCTAAGATTGGACCGGACTGAGGGTTACGGTAGCAGGA
583 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGA
* *** * * * * *
1021299 TCGGCAGTATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCTCTCTGGCTGGCT
648 TCGGCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* * * *
1021364 GAGCGCCTGCACACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
713 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * ** * *
1021429 ACGGAGTTCATT-CCAGTCTAAGA--TCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCT
778 ACAGAGTTCATTCCCAGTCTAAGATCTCGGA-TGGACAGAGGGTTGCGGCAGCACATGCTGGGCT
* * *
1021491 CAGGCATGTGCTGGTGCCGCATTTCTCTTTGCCGGGGCACCATCGTCGGAGCGTCGCC
842 -AGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGG---CA-C--C--A---TCGCC
* * * * *
1021549 GGAGAACCTGATCGGCGGCATTGGGGTTTCGACGATCGAGGTGGCCAGGGGGGTGTGCGCACATG
1 GGAGAACCTGACCAGCGGCATT-GGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTGCGCACATG
* *
1021614 ATGTGCGATGGGTGCTGGTACCTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
64 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
1021679 CTCACTCCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCT
129 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
1021744 GGAATGGGGACA-CTGTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTT
194 GAAATGGGGACACCT-TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
**
1021808 TTTTTGTGCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAAATCCTTCC
258 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
* ** * ** * *
1021873 -AAAAAATTTTTAAAAAATCTTGAACCGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAATGAG
323 GAAAAAA-TTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
*
1021937 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAC
387 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
1022002 AATGGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCAAG
452 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
1022067 GCTTGCACATCCCGACTCTCTGGCCGACGTAGTGCCCGCCCACCCGCTCACTCGTTTCG-CTGGT
517 ACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC-GGT
* * * * * * * *
1022131 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTATACTGAACTGAGGGTTGTGGTAGTAG
581 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAG
* * * * * **
1022196 GATCAGCAGCACACAGAGGGGGACCC-AGTCGATCCCCAGCTTGCACATCGTGCCCCTCTGGCCG
646 GATCGGCAGCACATAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* ** * *
1022260 ACTGAGTGCCTACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCTAGTCTAAG
710 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* ** * *
1022325 CATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAGACTGAGGGTTGCGACAGCACATGC
775 CATACAGAGTTCATTCCCAGTCTAAGATC---TCGGA-TGGACAGAGGGTTGCGGCAGCACATGC
* * * *
1022390 TGGGCTCGGGCATGTTCTGGTG-CTGTATTTTTCTTCGCCGGGGCATCAT---C
836 TGGGCT-AGGCATGTGCTGGTGTC-GCATTTTTCTTCGCCGGGGCACCATCGCC
* * * *
1022440 GGAGAACTTGACCAGCGGCATTGGGGTTAC-AGTGATCGGGGGGCC-GGGGGGTGTGCACACATG
1 GGAGAACCTGACCAGCGGCATT-GGGTTCCGA-CGATCGGGGGGCCGGGGGGGTGTGCGCACATG
*
1022503 ATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC-CTATCAAACCTCGAGA
64 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGA
* * *
1022567 ACTCAGACCCCCTTAAAGAGCATCTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
128 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * * *
1022632 TGGAATGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCAATTTTTTAGCTG-ATT
193 TGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * ** *
1022696 TTTTTCATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGTCTGAAACTCCTTC
258 TTTTT-GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC
* ** ** * *
1022761 CAAAAAAATTTTAAAAAATCCCT-AACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGA
322 CGAAAAAATTTTAAAAAAT-CCTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
* *
1022825 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTACGAATTTACAAGCCATAA
386 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
1022890 AAATGGCATTGGCATGTAGAAATA-GAAGATGTGCCTAAACCTACCTACCACCATATCGATCGAC
451 AAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* ***
1022954 GACTTGCGCATCCCGTCTTTCTGATTGACGTAGTGCCCACCCGCCCGCTCGCCCGCCCGCTCGTT
516 GACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCG--C-C-CGCCCGCCCGCTCGTT
* * * * * *
1023019 TCATCTGTTGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGT
573 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
* * * * * ** * * *
1023084 GGTAGCAGGATCGGTAACACGTAGAGGGGGACCCGACTGATCATCGACTTGCGCATACCTCCCCT
638 GGCAGCAGGATCGGCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * *
1023149 CCGGCCGGCTGATCGCCCGTACGGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
703 CTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
** * * * *
1023214 GTCTAAGCATATGGAGTTCATTCCCAGTCTAAGA--TCAGACCGGATC-CAGGGTTGCAGCAGCA
768 GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCTCGGA-TGGA-CAGAGGGTTGCGGCAGCA
* * * *
1023276 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCC
831 CATGCTGGGCT-AGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCATCGCC
* * * *
1023334 GAAGCTTCACCAGAGAACCTGACC-GACGGCATTAGGGTTTCGGCGATC-GGGGGTCTGGGGGGT
1 ---G--------GAGAACCTGACCAG-CGGCATT-GGGTTCCGACGATCGGGGGGCCGGGGGGGT
*
1023397 GTGAGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
53 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
1023462 AACCTCGAGAACTCAGACCCCTTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
118 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
1023527 TTAAAGTATCTGAAATGGGGACA-CTTTTATCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
183 TTAAAGTGTCTGAAATGGGGACACCTTTT-TCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * **
1023591 TTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTCTATGGCCA
247 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * ** *
1023656 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA-TTTTGAAAATTGTGAAAAAT
312 AAAATCCTTCCGAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCGTGAAAAAT
* *
1023720 AGAAAACGAGTTGTCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
377 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * * *
1023785 AAGCCATGAAAATGGCATTGGCATGCA-AAATTATGAAGATGTGCCTAAACCCACGTACCACCCT
442 AAGCCATAAAAATGGCATTGGCACGTAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
1023849 ATCGATCCACAACTTGCGCATCTCGTCTCTCTGGCC-AGCGTAGTGCCTGCCCGCCCGCCCGCTT
506 ATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCTC
**
1023913 GCTCATTACGTTAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCG
570 G-T--TT-CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCG
* * * * * * *
1023977 AGGGTTGCGGTAGCAAGATCAGCAGCACGTAGAGGAGGACCTGGCCGAT-CCC--C--GC-C-T-
630 AGGGTTGCGGCAGCAGGATCGGCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* * * * *
1024034 ------CTCTGGCCTACTGAACGCCCACACGCTCTTTTCTTGGGTTGACTTAGGCATACGGAGTT
695 CCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* *
1024093 CATTCCCAGTCTACGCATACAGAGTTCATTCCCAGT-TAAGA--TCGGATCGGATCA-AGGGTTA
760 CATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCTCGGAT-GGA-CAGAGGGTTG
* * * * * * **
1024154 TGGCAGCAAATGCTAGGCTCGGGCATGTGCTAGTGCCGCA-TTTTCTTCATCGGGGCACCATCAC
823 CGGCAGCACATGCTGGGCT-AGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCAT---
1024218 CGGAGCATCATC
884 C---G---C--C
* *
1024230 GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTC-GGGGGGTGTGCGCACATG
1 GGAGAACCTGACCAGCGGCATT-GGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATG
*
1024294 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTCGAGAA
64 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
1024359 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCT-GCCATTAAAGTATC
129 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG-TAGCCATTAAAGTGTC
* * *
1024423 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATG
193 TGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
1024488 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTTGGGCCAAAACTCCTTCC
258 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
* ** * *
1024553 GAAAAAATTTTAAAAAAT-TTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAG
323 GAAAAAATTTTAAAAAATCCT-GAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
*
1024617 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAA
387 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * *
1024682 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTAGCGATCGACG
452 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
1024747 GCTTGCGCATCCCTTTTCTCTGGCCGACGTAGTGCCCACCGGCCCGCCCGCTCGTTTCGTCAGTT
517 ACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * *
1024812 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGG
582 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGG
* * * * ** * * * * *
1024877 ATCGGTAACACGTAGAGGGGGACCC-AGCTGATCATCGACTTGCGCATTCCTCCCCTCCGGCCGG
647 ATCGGCAGCACATAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* * * *
1024941 CTGATCGCCCGTACGGTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
711 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
1025006 ATACAGAGTTCATTCCCAGTCTAAGA--TCAGACCGGATC-GAGGGTTGCAGCAGCACATGCTGG
776 ATACAGAGTTCATTCCCAGTCTAAGATCTCGGA-TGGA-CAGAGGGTTGCGGCAGCACATGCTGG
* * * *
1025068 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCGAAGCTTCACC
839 GCT-AGGCATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCA---TC---G-----CC
* * * * * * *
1025129 AGAGAACCTGACCAACGGCATTAGGGTTTCGGCGATC-AGGGGTCTGGGGGGTGTGCGCACATGA
1 GGAGAACCTGACCAGCGGCATT-GGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGA
*
1025193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAAC
65 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
1025258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
130 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
1025323 AAATGGGGACACTTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
195 AAATGGGGACAC-CTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * *
1025388 TTTTTGTGCATGCCAACAAAAGTACAAGGATCACATCTACCAACTTTGGGCCCAAAAATCCTTTC
258 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
* * ** *
1025453 GAAAAAATTTTAAAAAATCCTGAATCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGT
323 GAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
* * *
1025518 CGTCTTGCCATGAAAATTCACGTGAAGGCTAAAAGGGACCATTGTATGAATTAACAAGCCATAAA
388 CGTCTTGCCATGAAACTTCACGTGAAGGCT-TAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * *
1025583 AATGGCATTGGCATGAAAAAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCCATCCAC
452 AATGGCATTGGCACG-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * *
1025648 GGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCTGCCCACCCACCTGCTCGCTCGTTTCGT
516 GACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-CGC-CC-GCCCGCTCGTTTCGT
* * * *
1025713 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTGCAGCA
577 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCA
1025778 GCA
642 GCA
1025781 CATGCTGGGC
Statistics
Matches: 8783, Mismatches: 1891, Indels: 1631
0.71 0.15 0.13
Matches are distributed among these distances:
823 47 0.01
826 4 0.00
827 6 0.00
828 1 0.00
830 2 0.00
831 179 0.02
833 5 0.00
836 1 0.00
837 1 0.00
838 1 0.00
840 2 0.00
849 3 0.00
850 1 0.00
852 6 0.00
853 1 0.00
854 1 0.00
855 4 0.00
856 248 0.03
857 116 0.01
858 96 0.01
859 6 0.00
860 2 0.00
862 43 0.00
863 5 0.00
864 1 0.00
865 2 0.00
866 1 0.00
867 3 0.00
868 42 0.00
869 2 0.00
870 359 0.04
871 4 0.00
874 1 0.00
875 2 0.00
876 135 0.02
877 28 0.00
878 4 0.00
879 84 0.01
880 29 0.00
881 269 0.03
882 57 0.01
883 96 0.01
884 395 0.04
885 55 0.01
886 343 0.04
887 281 0.03
888 80 0.01
889 377 0.04
890 144 0.02
891 581 0.07
892 450 0.05
893 42 0.00
894 47 0.01
895 278 0.03
896 393 0.04
897 111 0.01
898 218 0.02
899 292 0.03
900 394 0.04
901 145 0.02
902 80 0.01
903 7 0.00
904 133 0.02
905 568 0.06
906 91 0.01
907 10 0.00
908 7 0.00
909 51 0.01
910 5 0.00
911 8 0.00
912 12 0.00
913 2 0.00
914 10 0.00
915 6 0.00
916 17 0.00
917 17 0.00
918 13 0.00
919 7 0.00
920 23 0.00
921 20 0.00
922 9 0.00
923 12 0.00
924 8 0.00
925 10 0.00
926 32 0.00
927 38 0.00
928 29 0.00
929 29 0.00
930 20 0.00
931 19 0.00
932 24 0.00
933 20 0.00
934 16 0.00
935 32 0.00
936 35 0.00
937 37 0.00
938 32 0.00
939 35 0.00
940 31 0.00
941 16 0.00
942 17 0.00
943 11 0.00
944 13 0.00
945 11 0.00
946 12 0.00
947 6 0.00
948 1 0.00
949 5 0.00
950 16 0.00
951 9 0.00
952 14 0.00
953 4 0.00
954 2 0.00
955 11 0.00
956 8 0.00
957 4 0.00
958 19 0.00
959 16 0.00
960 11 0.00
961 23 0.00
962 10 0.00
963 7 0.00
964 6 0.00
965 12 0.00
966 9 0.00
967 2 0.00
968 6 0.00
969 3 0.00
970 3 0.00
971 1 0.00
972 2 0.00
973 6 0.00
974 9 0.00
975 8 0.00
976 10 0.00
977 10 0.00
978 7 0.00
979 6 0.00
980 2 0.00
981 4 0.00
982 8 0.00
983 6 0.00
984 8 0.00
985 8 0.00
986 9 0.00
987 12 0.00
988 9 0.00
989 15 0.00
990 6 0.00
991 11 0.00
992 7 0.00
993 14 0.00
994 6 0.00
995 9 0.00
996 14 0.00
997 6 0.00
998 3 0.00
999 9 0.00
1000 12 0.00
1001 7 0.00
1002 3 0.00
1003 16 0.00
1004 10 0.00
1005 28 0.00
1006 10 0.00
1007 22 0.00
1008 14 0.00
1009 4 0.00
1010 1 0.00
1011 11 0.00
1012 13 0.00
1013 3 0.00
1015 3 0.00
1016 1 0.00
1019 1 0.00
1020 2 0.00
1021 3 0.00
1022 4 0.00
1024 15 0.00
1025 10 0.00
1026 7 0.00
1027 14 0.00
1028 3 0.00
1029 6 0.00
1030 3 0.00
1031 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
GGAGAACCTGACCAGCGGCATTGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGAT
GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
AAAATTTTAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCG
GCAGCACATAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
GAGTTCATTCCCAGTCTAAGATCTCGGATGGACAGAGGGTTGCGGCAGCACATGCTGGGCTAGGC
ATGTGCTGGTGTCGCATTTTTCTTCGCCGGGGCACCATCGCC
Found at i:1015949 original size:26 final size:26
Alignment explanation
Indices: 1015920--1015972 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1015910 GTTGACTTAG
*
1015920 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1015946 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1015972 G
1 G
1015973 ATCTGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1020941 original size:718 final size:717
Alignment explanation
Indices: 1017661--1021295 Score: 5300
Period size: 718 Copynumber: 5.1 Consensus size: 717
1017651 CCTAGTCTAA
* * * ** * * *
1017661 GCATAAGGAGTTCATTCCCAGTTTAAGATTGGATTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGG
* * * *
1017726 CTCAGGCATGTGCTGGTGCCGGATTTTTCTTTGCCGGGGCACCATCGTC-GAAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAG-AGCATCGCCGGAG
* * * ** * *
1017790 AACCTGACCGACGGCATTGGTGTTCCGGTGATC-GGGGGGCCGGTGGGGGGTTTGCGCACATAAT
130 AACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCC---GGGGGGTGTGCGCACATGAT
* *
1017854 GTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
*
1017919 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
257 CACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
1017984 AATGGGGACACTTTTTTCAAACGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * ** * *
1018049 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTCAGGGTGAAAAATCCTTCTGA
387 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGA-GGCCAAAACTCCTTCCGA
* * * ** *
1018113 AAAAATTTTAAAAAATCCCGATCTGTAAAAACTTTTGAAAATCGTGAAAAGTAGAAAACGAGTCG
451 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
1018178 TCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGGGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
1018243 GGCATTGGCAAGCAGAAATATGAAGATGAGCCTAAACTCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
1018308 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGT
646 TGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCC-ACCGTCCGCCCGCCCGCTCGTTTCGTCGGT
1018373 TGGCTTAG
710 TGGCTTAG
* * * *
1018381 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGG
1018446 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT--------CAT---CGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCCGGAGA
* * *
1018500 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCTGGGGGGGCTGTGCGCACATGATGT
131 ACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGG-TGTGCGCACATGATGT
** * *
1018565 AAGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
1018630 C-ACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 CAACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
1018694 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTCTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TT
* *
1018758 TTATGCATGCCAAAAAAAAATACAAGGATCACGTCTACAAAGTTTGAGGCCAAAACTCCTTCCGA
387 TTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGA
1018823 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
451 AAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
1018888 GTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGGGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
1018953 TGGCATTGTCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
580 TGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
1019018 TTGTGCATCCCGTCTCTCTGGTCGGCATAGTGCCCACCCGTCCGCCCGCCTGCTCGTTTCGTCGG
645 TTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCA-CCGTCCGCCCGCCCGCTCGTTTCGTCGG
*
1019083 TCGGCTTAG
709 TTGGCTTAG
*
1019092 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGG
* *
1019157 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGGGCACCATCGCCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCCGGAGA
* *
1019222 ACCTGATCGGTAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
1019287 GATGGGTTCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATCACACCTTGGGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
*
1019352 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATT
261 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
1019417 GGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
1019482 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTT-AGCACCAAAACACCTTCCGAAAAA
391 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGAG-GCCAAAACTCCTTCCGAAAAA
* * * *
1019546 GTTGTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
1019611 ACCATGAAACTTCACGTG-ATGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGC
520 GCCATGAAACTTCACGGGAAT-GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
1019675 ATTGGCATGCAA-AAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCAACGGCTTG
584 ATTGGCATG-AAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
1019739 CGCGTCCCGTC-CTTTTGGCCGACGTAGTG---ACCGCCCG-CCGTCCGCTTGTTTCGTCGGAGT
648 CGCATCCCGTCTC-TCTGGCCGGCATAGTGCCCACCGTCCGCCCGCCCGCTCGTTTCGTC-G-GT
* *
1019799 TGATTCCCAGTCTAA
710 TG----GC--T-TAG
* * * **
1019814 GCATACGGAGGTCATTCCCAGTCTAAGATCGAAACTGGACCGAGGGTTGTGGTAGCACATGCT-G
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-GACCGGACCGAGGGTTACGGTAGCACATGCTAG
* * **
1019878 AGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTTACCGGGGCACCATCGCCAGAGCATCGCCGGA
65 -GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCCGGA
* * *
1019943 GAACTTGACCGGCAGCATTGGGGTTCCGACGATCAGGGGTGCCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
*
1020008 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
*
1020073 AC-ACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
258 ACAACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
1020137 AATAGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTCT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-T
* ** *
1020201 TTTATGCATGCCAAAAAAAATACAAGGATCACGTCTAAAAAGTTTGAGGCCAAAACTCGTTCCGA
386 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGA
*
1020266 AAAAATTTTAAAGAAATCCCGAACCGT-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTT
451 AAAAATTTTAAA-AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
1020330 GTCTTGCCATGAAACTTCACGGGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACGGGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
1020395 TGGCATTGTCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
580 TGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
1020460 TTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCAACCGTCCGCCCGCCTGCTCGTTTCGTCGG
645 TTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCC-ACCGTCCGCCCGCCCGCTCGTTTCGTCGG
1020525 TTGGCTTAG
709 TTGGCTTAG
*
1020534 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGG
* *
1020599 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCCGGAGA
* *
1020664 ACCTGATCGGTAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
1020729 GATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCACACCTTGGGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* *
1020794 ACCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
261 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
1020859 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
1020924 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAG
391 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAAAAA
* *
1020989 TTGTAAAAAATCCCGAACCGTAAAATA-TTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
456 TTTTAAAAAATCCCGAACCGTAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
** *
1021053 GCCATGAAACTTCAC-GTTATGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGC
520 GCCATGAAACTTCACGGGAAT-GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
1021117 ATTGGCACGCAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
584 ATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
1021182 GCATCCCGTCTCTTTGGCCGGC---GT----A--GT--GCCCGCCCGCTCGTTTCGTCGGTTGGC
649 GCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
1021236 TTAG
714 TTAG
* * * *
1021240 GCATACGGAGTTCATTTCCAATCTAAGATTGGACCGGACTGAGGGTTACGGTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCA
1021296 GGATCGGCAG
Statistics
Matches: 2643, Mismatches: 216, Indels: 126
0.89 0.07 0.04
Matches are distributed among these distances:
706 81 0.03
708 16 0.01
709 234 0.09
710 58 0.02
711 342 0.13
712 3 0.00
713 15 0.01
714 7 0.00
715 6 0.00
717 19 0.01
718 634 0.24
719 192 0.07
720 329 0.12
721 17 0.01
722 75 0.03
723 134 0.05
724 435 0.16
725 19 0.01
727 4 0.00
728 8 0.00
729 15 0.01
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (717 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCAGAGCATCGCCGGAGA
ACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGGGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCATAGTGCCCACCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AG
Found at i:1021450 original size:25 final size:26
Alignment explanation
Indices: 1021399--1021450 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1021389 GTTGGCTTAG
1021399 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1021425 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1021450 G
1 G
1021451 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.38
26 16 0.62
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1022334 original size:26 final size:26
Alignment explanation
Indices: 1022298--1022350 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1022288 GTTGACTTAG
* *
1022298 GCATACGGAGTTAATTCCTAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
*
1022324 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTCTAA
1022350 G
1 G
1022351 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTCTAA
Found at i:1023224 original size:26 final size:26
Alignment explanation
Indices: 1023194--1023246 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1023184 GTTGACTTAG
1023194 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1023220 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1023246 G
1 G
1023247 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1023594 original size:905 final size:897
Alignment explanation
Indices: 1020534--1025772 Score: 6932
Period size: 891 Copynumber: 5.9 Consensus size: 897
1020524 GTTGGCTTAG
* * *
1020534 GCATAC-GAAGTTCATTCCCAGTCTAAGATCGGACCGGA-CCGAGGGTTACGGTAGCACATGCTA
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCAGACCGGATCCGAGGGTTACGGCAGCACATGCTG
* * **
1020597 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCC-AGAGCATCGTCGG
65 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGA-AGCTTCACCGG
* ** * *
1020661 AGAACCTGATCGGTAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
129 AGAACCTGACCGGCGGCATTGGGGTTTCGACGATC-GGGGGTCCGGGGGGTGTGCGCACATGATG
* * * *
1020726 TGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCACACCTTGGGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
1020791 ACAACCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1020856 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
1020921 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAA
* * *
1020986 AAGTTGTAAAAAATCCCGAACCGTAAAATA-TTTCAAAAATCGTGAAAAATAAAAAACGAGTCGT
452 AAATTTTAAAAAATCCCGAACCGTAAAA-AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
1021050 CTTGCCATGAAACTTCACGTTATGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1021115 GCATTGGCACGCAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGACTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
* * *
1021180 GCGCATCCCGTCTCTTTGGCCGGCGTAGT----------GCCCGCCCGCTCGTTTCGTCGGTTGG
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCGCCCGCCCGCTCGTTTCGTCTGTTGG
* * ** * **
1021235 CTTAGGCATACGGAGTTCATTTCCAATCTAAGATTGGACCGGACTGAGGGTTACGGTAGCAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGAT
* * * * *
1021300 CGGCAGTATGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCC-CACCTCTCTGGCTGGC
776 CGGCAGCACGTAGAGGGGGACCC-ACT-GAT-CCCGACTTGCGCATCCTC-CC-CTCTGGCCGGC
* * * * *
1021363 TGAGCGCCTGCACACTCGTTTTGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 TGATCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1021425 GCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGA-CCGAGGGTTACGGCAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCCGAGGGTTACGGCAGCACATGCTGG
* * * * * * *
1021488 GCTCAGGCATGTGCTGGTGCCGCATTTCTCTTTGCCGGGGCACCATCGTCGGAGCGTCGCCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGAAGCTTCACCGGAG
*
1021553 AACCTGATCGGCGGCATTGGGGTTTCGACGATCGAGGTGG-CCAGGGGGGTGTGCGCACATGATG
131 AACCTGACCGGCGGCATTGGGGTTTCGACGATCG-GG-GGTCC-GGGGGGTGTGCGCACATGATG
* *
1021617 TGCGATGGGTGCTGGTACCTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
1021682 ACTCCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGGA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1021747 ATGGGGACACTGTTTTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTT
323 ATGGGGACACT-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
1021811 TTGTGCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAAATCCTTCC-AA
387 TTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT-GGGCCAAAACTCCTTCCGAA
** * * *
1021875 AAAATTTTTAAAAAATCTTGAACCGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAATGAGTCG
451 AAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
1021940 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAACAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
1022005 GGCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCAAGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACT
* * * * *
1022070 TGCACATCCCGACTCTCTGGCCGACGTAGTGCCCG-C-CCACCCGCTCACTCGTTTCG-CTGGTT
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCGCCCGCCCGCTCGTTTCGTCT-GTT
* * * *
1022132 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTATA-CTGAACTGAGGGTTGTGGTAGTAG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGTGGTAGCAG
* ** * * * * *
1022196 GATCAGCAGCACACAGAGGGGGACCCAGTCGATCCCCAGCTTGCACATCGTGCCCCTCTGGCCGA
773 GATCGGCAGCACGTAGAGGGGGACCCACT-GATCCCGA-CTTGCGCATCCT-CCCCTCTGGCCGG
** * *
1022261 CTGAGT-GCCTACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCTAGTCTAA
835 CTGA-TCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1022324 GCATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAGACTGAGGGTTGCGACAGCACATG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATC---C-GAGGGTTACGGCAGCACATG
* * *
1022389 CTGGGCTCGGGCATGTTCTGGTGCTGTATTTTTCTTCGCCGGGG---CAT---C--A---T---C
62 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGAAGCTTCACC
* * * * * *
1022440 GGAGAACTTGACCAGCGGCATTGGGGTTAC-AGTGATCGGGGGGCCGGGGGGTGTGCACACATGA
127 GGAGAACCTGACCGGCGGCATTGGGGTTTCGA-CGATCGGGGGTCCGGGGGGTGTGCGCACATGA
*
1022504 TGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC-CTATCAAACCTCGAGAA
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGAA
* * *
1022568 CTCAGACCCCCTTAAAGAGCATCTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
1022633 GGAATGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCAATTTTTTAGCTG-ATTT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * **
1022697 TTTTCATGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGTCTGAAACTCCTTCC
385 TTTT-GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGG-CCAAAACTCCTTCC
* * * *
1022762 AAAAAAATTTTAAAAAATCCCTAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGT
448 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
1022827 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGTGACCATTGTACGAATTTACAAGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
1022892 ATGGCATTGGCATGTAGAAATA-GAAGATGTGCCTAAACCTACCTACCACCATATCGATCGACGA
578 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
* ***
1022956 CTTGCGCATCCCGTCTTTCTGATTGACGTAGTGCCCACCCGCCCGCTCGCCCGCCCGCTCGTTTC
643 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCG-CCGC-CGCCCGCCCGCTCGTTTC
* *
1023021 ATCTGTTGGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGG
702 GTCTGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGG
* * * *
1023086 TAGCAGGATCGGTAACACGTAGAGGGGGACCCGACTGATCATCGACTTGCGCATACCTCCCCTCC
767 TAGCAGGATCGGCAGCACGTAGAGGGGGACCC-ACTGATC-CCGACTTGCGCAT-CCTCCCCTCT
* *
1023151 GGCCGGCTGATCGCCCGTACGGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
829 GGCCGGCTGATCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
1023216 CTAA
894 CTAA
** * *
1023220 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCC-AGGGTTGCAGCAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCCGAGGGTTACGGCAGCACATGCTGG
* * *
1023284 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCGAAGCTTCACCAGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGAAGCTTCACCGGAG
* * * * *
1023349 AACCTGACCGACGGCATTAGGGTTTCGGCGATCGGGGGTCTGGGGGGTGTGAGCACATGATGTGC
131 AACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGTCCGGGGGGTGTGCGCACATGATGTGC
*
1023414 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAGA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
1023479 CCCCTTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
1023544 GGGACACTTTTATCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
**
1023609 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTCTAT-GGCCAAAACTCCTTCCGAAAAA
391 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGT-T-TGGGCCAAAACTCCTTCCGAAAAA
** * *
1023673 ATTTTAAAAAATCCCGAACCGTAAAAA-TTTTGAAAATTGTGAAAAATAGAAAACGAGTTGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
1023737 GTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
1023802 TTGGCATGCA-AAATTATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACAACTTGC
584 TTGGCATGCAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
* * ** * *
1023866 GCATCTCGTCTCTCTGGCC-AGCGTAGTGCCTGCCCGCCCGCCCGCTTGCTCATTACGT-TAGTT
648 GCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCG-CCG-CCGCCCGCCCGCTCGTTTCGTCT-GTT
* * * *
1023929 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTGCGGTAGCAA
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGTGGTAGCAG
* * * * * **
1023993 GATCAGCAGCACGTAGAGGAGGA--C-CTG--GCCGA--T-C-C--CCGCCTCTCTGGCCTACTG
773 GATCGGCAGCACGTAGAGGGGGACCCACTGATCCCGACTTGCGCATCCTCCCCTCTGGCCGGCTG
* * * * *
1024047 AACGCCCACACGCTCTTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAC
838 ATCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
1024107 GCATACAGAGTTCATTCCCAGT-TAAGATCGGATCGGAT-CAAGGGTTATGGCAGCAAATGCTAG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCCGAGGGTTACGGCAGCACATGCTGG
* ** * * * *
1024170 GCTCGGGCATGTGCTAGTGCCGCA-TTTTCTTCATCGGGGCACCATCACCGGAGCATCATCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGAAGCTTCACCGGAG
*
1024234 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGT-CGGGGGGTGTGCGCACATGATGT
131 AACCTGACCGGCGGCATTGGGGTTTCGACGATC--GGGGGTCCGGGGGGTGTGCGCACATGATGT
*
1024298 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1024363 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCT-GCCATTAAAGTATCTAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG-TAGCCATTAAAGTGTCTGAA
*
1024427 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
1024492 TGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAG-TTTGGGCCAAAACTCCTTCCGAAA
** ** * *
1024557 AAATTTTAAAAAATTTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
1024622 TTGCCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
1024687 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTAGCGATCGACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * * *
1024752 CGCATCCCTTTTCTCTGGCCGACGTAGTGCCCACCG--GCCCGCCCGCTCGTTTCGTCAGTTGGC
647 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCGCCCGCCCGCTCGTTTCGTCTGTTGGC
1024815 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATC
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATC
* * * *
1024880 GGTAACACGTAGAGGGGGACCCAGCTGATCATCGACTTGCGCATTCCTCCCCTCCGGCCGGCTGA
777 GGCAGCACGTAGAGGGGGACCCA-CTGATC-CCGACTTGCGCA-TCCTCCCCTCTGGCCGGCTGA
* * *
1024945 TCGCCCGTACGGTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 TCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1025004 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGAT-CGAGGGTTGCAGCAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCCGAGGGTTACGGCAGCACATGCTGG
* * * *
1025068 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGTCGAAGCTTCACCAGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGAAGCTTCACCGGAG
** * * * *
1025133 AACCTGACCAACGGCATTAGGGTTTCGGCGATCAGGGGTCTGGGGGGTGTGCGCACATGATGTGC
131 AACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGTCCGGGGGGTGTGCGCACATGATGTGC
*
1025198 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
1025263 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
1025328 GGGACACTTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
326 GGGACAC-TTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
1025393 GTGCATGCCAACAAAAGTACAAGGATCACATCTACCAACTTTGGGCCCAAAAATCCTTTCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGG-CCAAAACTCCTTCCGAAAA
* * * *
1025458 AATTTTAAAAAATCCTGAATCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
1025523 TGCCATGAAAATTCACGTGAAGGCTAAAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGG
518 TGCCATGAAACTTCACGTGAAGGCT-TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
1025588 CATTGGCATGAAAAAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCCATCCACGGCTT
582 CATTGGCATG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTT
* * * * * *
1025653 GCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCTGCC-CACCCACCTGCTCGCTCGTTTCGTCGGT
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGC-CGC-CC-GCCCGCTCGTTTCGTCTGT
*
1025717 TGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGA-TCGAGGGTTG
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTG
1025773 CAGCAGCACA
Statistics
Matches: 3824, Mismatches: 409, Indels: 215
0.86 0.09 0.05
Matches are distributed among these distances:
883 95 0.02
884 1 0.00
885 65 0.02
886 346 0.09
887 270 0.07
888 83 0.02
889 373 0.10
890 153 0.04
891 557 0.15
892 12 0.00
893 2 0.00
894 9 0.00
895 2 0.00
896 208 0.05
897 110 0.03
898 218 0.06
899 271 0.07
900 196 0.05
901 149 0.04
902 82 0.02
903 3 0.00
904 108 0.03
905 428 0.11
906 82 0.02
907 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCCGAGGGTTACGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGAAGCTTCACCGGAG
AACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGTCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCGCCCGCCCGCTCGTTTCGTCTGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGCAGGATCGGCA
GCACGTAGAGGGGGACCCACTGATCCCGACTTGCGCATCCTCCCCTCTGGCCGGCTGATCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1025008 original size:26 final size:26
Alignment explanation
Indices: 1024978--1025030 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1024968 GTTGACTTAG
*
1024978 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1025004 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1025030 G
1 G
1025031 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1027958 original size:873 final size:874
Alignment explanation
Indices: 1025701--1029136 Score: 4671
Period size: 901 Copynumber: 3.9 Consensus size: 874
1025691 CCCACCTGCT
* * * *
1025701 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCG
1 CGCTCGTTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCG
* * * **
1025766 AGGGTTGCAGCAGCACATGCTGGGCTCGAGCATTTGCTGGTGCCGTATTTTTCTTCCCCGGGGCA
66 AGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
** * * *
1025831 CCATTGTCGGAGCATCATCGGAGAACTTTACCGGCGGCATTAGGGTTCCGACGATCGGG-GCGGC
131 CCATCATCGGAGCATCATCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGAG-GG-
** * *
1025895 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTTTTTGGCCCTTATATTGGCCTCCTATT
194 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
1025960 CCTCAACAAACCTCGAGAACTCACACCCCGTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCC
259 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
1026025 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
324 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
1026090 CGAGTTTTTAGCTGATTTTTTTTTTGTGCGTGCCAACAAAAATACAAGGATCACGTCTACCAAGA
389 CGAGTTTTTAGCTGA--ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * *
1026155 TTGGGGCCAAAACTCCTTCCGAAAAAGTTTTAAAAAATCCCAAACTACAAAAAGTTTCAAAAATC
452 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATC
* *
1026220 GTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
517 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
1026285 TGAATTTGCAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
582 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
1026350 ACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCTGCCCC
647 ACCACCCTATCAATCCAC-GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCT
* * * * * *
1026415 CTCCGCCCGCTCCTTTCGTCGGTTGGCTTAGGCATATGTAGTTCATTCCCAGTCTAAAATTGGAT
711 C-CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
* * * ** * ** *
1026480 CGGACCGATGGTTGCGGCAGTAGGATCGACAGTGCATAGAGGGGGACCCGACCGATCCTTGACTT
775 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGA-CGATCCCCGGCTT
* * * *
1026545 ACGCATCCCGCCCCTCTGGCTGGCTGAACGCCCGTA
839 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTA
* * * *
1026581 CACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCG
1 CGCTCGTTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCG
** * * ** *
1026646 AGGGTTGCAGCAGCACATGCTACGCTTGGGCATGTGCTGCTGCTACATTTTTCTTCGTTGGGGCA
66 AGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
* * * * * * * * *
1026711 CAATCACCGGAGCATCGTCAGAGAACTTGACCGACGGCATTAGGGTTCAGGCGATC-GGAAGGCT
131 CCATCATCGGAGCATCATCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGAGGGCG
* * *
1026775 AGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGCCTTTATATTGGCCCCCTATCCC
196 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * *
1026840 TCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTACCAG
261 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
1026904 TAGCCATATAAAGTGTTTGAAATGGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACAC-T
326 TAGCCAT-TAAAGTGTCTGAAAT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * *
1026967 CGATTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT
389 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
1027032 GGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCAT
454 GGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGT
* * *
1027097 GGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTACACCTGAAGGCTTAAGGGACCATTGTATG
519 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
1027162 AATTTACAAGCCATAAAAATGGCA-TGGCATC-CAGAAATATGAAGATGTGCCTAAACCCACCTA
584 AATTTACAAGCCATAAAAATGGCATTGGCA-CGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
1027225 CCACCCTATCAAGCCACGACTTGCGCATCCCGCCTCTCTGGGCGGCGTAGTGCCCGTCC-GCCCT
648 CCACCCTATCAATCCACG-CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCTGCCCT
** * * *
1027289 CCCG-GTGATTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATTGGAC
711 CCCGCCCG-CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGAC
* * *
1027353 CGGACCAAGGGTTGTGGTAGCAGGATC-ACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTT
775 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGA-CGATCCCCGGCTT
* *
1027417 GCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCGCA
839 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTA
* *
1027453 TGCTCGTTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACTG
1 CGCTCGTTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCG
* * *
1027518 AGGGTTAC-GATAGCACATGCTGGGCTCGGGCATGTACTGGTGCCGCATTTTTCTTCGTCGGGGC
66 AGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
* *
1027582 ACCATCGTCGGAGCATTATCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGAGGGC
130 ACCATCATCGGAGCATCATCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGAGGGC
* * *
1027647 GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTAGTACTTGGCCATTATATTGGCCCCCTATCC
195 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
*
1027712 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCA
260 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
1027777 -TAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
325 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* * * *
1027841 GAGCTTTTACCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTG
390 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * *
1027906 GGGCCAAAACTACTTTCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCGAAAACCGTG
455 GGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTG
* * * *
1027971 AAAAAGAGAAAACTAGTCGTCTTGTCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGA
520 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* *
1028036 ATTTACAAGCCATAAAAATGGCATTGGCACGCTGAAATATGAAGATGTGCCTAAACCCACCTGCC
585 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
1028101 ACCCTATCAATCCACGTCTTGTGCATCCCGTATCTCTGGCCGACGTAGTGCCCGACC-ACCCGCC
650 ACCCTATCAATCCACG-CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCTGCCCTCC
* * *
1028165 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAG
713 CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGG
* * * * *
1028230 ACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAAATGGGGACCCGACTATCCCCAGCTTGCGC
778 ACCGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGACGATCCCCGGCTTGCGC
1028295 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTA
843 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTA
*
1028327 CGCTTGTTTCGTGCGTTCACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 CGCTCGTTTCGT--G--------GG-AT--G-A---C-TT---AG-----GCATACGGAGTTCAT
* * * * * * *
1028392 TCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC-GACAGCACTTGTTGGGCTCGGGCATGTGCC
40 TCCCAATCTAAGATCAGACCAGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGGGCATGTGCT
* * * * * *
1028456 GGGGCCCCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCACCGGAGAACCTAACCGGCGGC
104 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCATCGGAGAACCTGACCGACGGC
* * *
1028521 ATTGGGGTTCCGACGATCGGGGGGGCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTA
169 ATTAGGGTTCCGACGATCGGGAGGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
1028586 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGC
233 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
1028651 ATTTGAGATTTTATAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
298 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
1028715 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGCCAACAAAA
363 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
1028780 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAATCT
428 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCT
** * *
1028844 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAAAGTAAACGAGTCGTCTTGCCATGAAACTTCA
492 CGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
1028909 CATTAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAGAAA
557 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * *
1028974 TATGAAGATGTGCCTAAACCCACCTACCACCCTATTAATCCACGCTTGCGCATCCCGTCTTTTTG
622 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGCTTGCGCATCCCGTCTCTCTG
*
1029039 GCCGGCGTAGTGCCCGCCTG----CCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
687 GCCGGCGTAGTGCCCGCCTGCCCTCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
** * * *
1029100 TCATTCTTAGTCTAAGATCGAACCGGAACGAGGGTTG
752 TCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTG
1029137 CCATGAAACT
Statistics
Matches: 2253, Mismatches: 258, Indels: 74
0.87 0.10 0.03
Matches are distributed among these distances:
871 9 0.00
872 262 0.12
873 368 0.16
874 349 0.15
875 208 0.09
876 1 0.00
877 59 0.03
878 123 0.05
879 12 0.01
880 158 0.07
884 2 0.00
885 2 0.00
887 1 0.00
888 1 0.00
891 1 0.00
892 2 0.00
895 2 0.00
896 69 0.03
899 2 0.00
900 184 0.08
901 438 0.19
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (874 bp):
CGCTCGTTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCG
AGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA
CCATCATCGGAGCATCATCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGAGGGCG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
GGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGA
AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCAATCCACGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCTCCCGC
CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACC
GAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGACGATCCCCGGCTTGCGCATC
CTGCCCCTCTGGCCGGCTGAGCGCCCGTA
Found at i:1028380 original size:26 final size:26
Alignment explanation
Indices: 1028351--1028403 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1028341 GTTCACTTAG
1028351 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1028377 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1028403 G
1 G
1028404 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1031278 original size:25 final size:26
Alignment explanation
Indices: 1031244--1031293 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
1031234 TGACTTAGGC
*
1031244 ATACGGAGTTCATTCCTAG-CTAAGG
1 ATACGGAGTTCATTCCCAGTCTAAGG
1031269 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
1031294 ATTGGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:1033075 original size:26 final size:26
Alignment explanation
Indices: 1033045--1033094 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
1033035 GTTGACTTAG
*
1033045 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
* *
1033071 GCATATGGAGTTCAATCCCAGTCT
1 GCATACGAAGTTCAATCCCAGTCT
1033095 GAGATCGGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:1033968 original size:26 final size:26
Alignment explanation
Indices: 1033938--1033990 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1033928 GCTGACTTAG
1033938 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1033964 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1033990 G
1 G
1033991 ATCGAATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Done.