Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 51 of 129
Found at i:7201185 original size:105 final size:103
Alignment explanation
Indices: 7200988--7201186 Score: 238
Period size: 105 Copynumber: 1.9 Consensus size: 103
7200978 TGAGATTTTT
* *
7200988 AAAGTTTGTTGCCTTTATATAAAACTCTTTTTTGAAATGAGATTTCTAAGGTTTGTTGCCTATAT
1 AAAGTTTGTTGCCTTTATATAAAACTCTTTTTTGAAATGAAATTTCTAAAGTTTGTTGCCTATAT
** *
7201053 TTATAGGAGCACCTTTTGGAATGAGATTTAAAAAAAAA
66 TTATAGGAGCACCTTTTAAAATAAGATTTAAAAAAAAA
* ** * * * *
7201091 AAAGTTTGTTGCCTATCTTTATAGTAGTCTTTTTTTACATGAAATTTTTAAAGTTTGTTGCCTAT
1 AAAGTTTGTTGCCT-T-TATATAAAACTCTTTTTTGAAATGAAATTTCTAAAGTTTGTTGCCTAT
* *
7201156 CTTTATAGGAGC-TCTTTTCAAAATAAGATTT
64 ATTTATAGGAGCACCTTTT-AAAATAAGATTT
7201187 GTAAAATTCG
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
103 14 0.18
104 6 0.08
105 59 0.75
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.44
Consensus pattern (103 bp):
AAAGTTTGTTGCCTTTATATAAAACTCTTTTTTGAAATGAAATTTCTAAAGTTTGTTGCCTATAT
TTATAGGAGCACCTTTTAAAATAAGATTTAAAAAAAAA
Found at i:7201200 original size:49 final size:49
Alignment explanation
Indices: 7201098--7201227 Score: 131
Period size: 49 Copynumber: 2.7 Consensus size: 49
7201088 AAAAAAGTTT
* ** * * * *
7201098 GTTGCCTATCTTTATAGTAG-TCTTTTTTTACATGAAATTTTTAAAGTTT
1 GTTGCCTATCTTTATAGGAGCTC-TTTTAAAAATGAAATTTGTAAAATTC
*
7201147 GTTGCCTATCTTTATAGGAGCTCTTTTCAAAAT-AAGATTTGTAAAATTC
1 GTTGCCTATCTTTATAGGAGCTCTTTTAAAAATGAA-ATTTGTAAAATTC
*
7201196 GTTGCCTAT-TTTCATAGGAACTCTTTTAAAAA
1 GTTGCCTATCTTT-ATAGGAGCTCTTTTAAAAA
7201228 AAAGTTAAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
48 5 0.07
49 62 0.90
50 2 0.03
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.45
Consensus pattern (49 bp):
GTTGCCTATCTTTATAGGAGCTCTTTTAAAAATGAAATTTGTAAAATTC
Found at i:7202561 original size:11 final size:11
Alignment explanation
Indices: 7202554--7202584 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
7202544 GACAAAAGAT
7202554 AAAAAAAAAAG
1 AAAAAAAAAAG
7202565 AAAAAAAAAAG
1 AAAAAAAAAAG
7202576 AGAAAAAAA
1 A-AAAAAAA
7202585 CCTTTGCTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:7202565 original size:13 final size:12
Alignment explanation
Indices: 7202547--7202584 Score: 58
Period size: 13 Copynumber: 3.0 Consensus size: 12
7202537 GAGGATAGAC
7202547 AAAAGATAAAAAA
1 AAAAGA-AAAAAA
7202560 AAAAGAAAAAAA
1 AAAAGAAAAAAA
7202572 AAAGAGAAAAAAA
1 AAA-AGAAAAAAA
7202585 CCTTTGCTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 9 0.38
13 15 0.62
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.03
Consensus pattern (12 bp):
AAAAGAAAAAAA
Found at i:7203453 original size:29 final size:29
Alignment explanation
Indices: 7203389--7203445 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
7203379 TTTATAATGC
*
7203389 ATACCTTA-TTTGTAATTTAGTTTTAAAA
1 ATACCTAAGTTTGTAATTTAGTTTTAAAA
*
7203417 ATACCTAAGTTTGTAA-TTAGTTTTGAAA
1 ATACCTAAGTTTGTAATTTAGTTTTAAAA
7203445 A
1 A
7203446 CTTTCTAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 19 0.73
29 7 0.27
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.46
Consensus pattern (29 bp):
ATACCTAAGTTTGTAATTTAGTTTTAAAA
Found at i:7205958 original size:7 final size:7
Alignment explanation
Indices: 7205946--7206020 Score: 65
Period size: 7 Copynumber: 11.7 Consensus size: 7
7205936 AAAGCCTAAA
7205946 CTAAACC
1 CTAAACC
7205953 CTAAA-C
1 CTAAACC
*
7205959 TTAAACC
1 CTAAACC
*
7205966 CTTAA-C
1 CTAAACC
7205972 C-AAACC
1 CTAAACC
*
7205978 ATAAACC
1 CTAAACC
7205985 CTAAACC
1 CTAAACC
7205992 CTAAACC
1 CTAAACC
7205999 C---ACC
1 CTAAACC
*
7206003 CCAAA-C
1 CTAAACC
7206009 CTAAACC
1 CTAAACC
7206016 CTAAA
1 CTAAA
7206021 TGAAAACCCT
Statistics
Matches: 54, Mismatches: 7, Indels: 14
0.72 0.09 0.19
Matches are distributed among these distances:
4 4 0.07
5 2 0.04
6 13 0.24
7 35 0.65
ACGTcount: A:0.45, C:0.40, G:0.00, T:0.15
Consensus pattern (7 bp):
CTAAACC
Found at i:7205988 original size:32 final size:31
Alignment explanation
Indices: 7205946--7206020 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 31
7205936 AAAGCCTAAA
*
7205946 CTAAACCCTAAA-CTTAAACCCTTA-ACCAAAC
1 CTAAACCCTAAACCCTAAACCC--ACACCAAAC
*
7205977 CATAAACCCTAAACCCTAAACCCACCCCAAAC
1 C-TAAACCCTAAACCCTAAACCCACACCAAAC
7206009 CTAAACCCTAAA
1 CTAAACCCTAAA
7206021 TGAAAACCCT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
31 13 0.33
32 18 0.46
33 8 0.21
ACGTcount: A:0.45, C:0.40, G:0.00, T:0.15
Consensus pattern (31 bp):
CTAAACCCTAAACCCTAAACCCACACCAAAC
Found at i:7206040 original size:13 final size:13
Alignment explanation
Indices: 7205940--7206041 Score: 86
Period size: 13 Copynumber: 8.1 Consensus size: 13
7205930 TTCATGAAAG
7205940 CCTAAA-CTAAAC
1 CCTAAACCTAAAC
*
7205952 CCTAAACTTAAAC
1 CCTAAACCTAAAC
*
7205965 CCTTAACC-AAAC
1 CCTAAACCTAAAC
*
7205977 CATAAACCCTAAAC
1 CCTAAA-CCTAAAC
*
7205991 CCTAAACC--CAC
1 CCTAAACCTAAAC
*
7206002 CCCAAACCTAAAC
1 CCTAAACCTAAAC
***
7206015 CCTAAATGAAAAC
1 CCTAAACCTAAAC
*
7206028 CCTAATCCTAAAC
1 CCTAAACCTAAAC
7206041 C
1 C
7206042 AACCCCCAAA
Statistics
Matches: 68, Mismatches: 17, Indels: 9
0.72 0.18 0.10
Matches are distributed among these distances:
11 9 0.13
12 14 0.21
13 36 0.53
14 9 0.13
ACGTcount: A:0.45, C:0.38, G:0.01, T:0.16
Consensus pattern (13 bp):
CCTAAACCTAAAC
Found at i:7208114 original size:37 final size:37
Alignment explanation
Indices: 7208063--7208134 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
7208053 GAATAATAAA
*
7208063 ATAGTACATATATTCCATCTCATGTACATCTTAATAT
1 ATAGTACATATATTCCATCTCATGCACATCTTAATAT
* * * *
7208100 ATAGTATATGTATTCTATCTTATGCACATCTTAAT
1 ATAGTACATATATTCCATCTCATGCACATCTTAAT
7208135 GGTAGTGTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.33, C:0.17, G:0.07, T:0.43
Consensus pattern (37 bp):
ATAGTACATATATTCCATCTCATGCACATCTTAATAT
Found at i:7210551 original size:11 final size:11
Alignment explanation
Indices: 7210537--7210561 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7210527 AAAAGTGTCT
7210537 AAAAAAAAAAG
1 AAAAAAAAAAG
7210548 AAAAAAAAAAG
1 AAAAAAAAAAG
7210559 AAA
1 AAA
7210562 GAGAAGAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:7210896 original size:17 final size:17
Alignment explanation
Indices: 7210846--7210902 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
7210836 AAGTTTTATG
7210846 CTTAATACAATTAT-ATA
1 CTTAATACAATT-TCATA
* *
7210863 CGTTGATA-AAGTTTCATG
1 C-TTAATACAA-TTTCATA
7210881 CTTAATACAATTTCATA
1 CTTAATACAATTTCATA
7210898 CTTAA
1 CTTAA
7210903 CAAAATGGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
17 20 0.62
18 12 0.38
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.40
Consensus pattern (17 bp):
CTTAATACAATTTCATA
Found at i:7213066 original size:20 final size:20
Alignment explanation
Indices: 7213041--7213081 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
7213031 TGATATTTCA
*
7213041 CTGAAATTCATTG-AAACAAC
1 CTGAAATT-AATGAAAACAAC
7213061 CTGAAATTAATGAAAACAAC
1 CTGAAATTAATGAAAACAAC
7213081 C
1 C
7213082 AGGATTGCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.49, C:0.20, G:0.10, T:0.22
Consensus pattern (20 bp):
CTGAAATTAATGAAAACAAC
Found at i:7213266 original size:10 final size:10
Alignment explanation
Indices: 7213197--7213275 Score: 54
Period size: 10 Copynumber: 7.8 Consensus size: 10
7213187 AAGGGCATGC
7213197 AAAGAAAAAA
1 AAAGAAAAAA
7213207 AAA-AAAAAGGA
1 AAAGAAAAA--A
*
7213218 AAAGAGAGAAA
1 AAAGA-AAAAA
*
7213229 AATGAAAAAA
1 AAAGAAAAAA
* **
7213239 AATGAAATGA
1 AAAGAAAAAA
*
7213249 ACAGAAAAAA
1 AAAGAAAAAA
*
7213259 AGA-AAAAAA
1 AAAGAAAAAA
7213268 AAAGAAAA
1 AAAGAAAA
7213276 GGAAAATTTT
Statistics
Matches: 53, Mismatches: 11, Indels: 10
0.72 0.15 0.14
Matches are distributed among these distances:
9 13 0.25
10 27 0.51
11 9 0.17
12 1 0.02
13 3 0.06
ACGTcount: A:0.80, C:0.01, G:0.15, T:0.04
Consensus pattern (10 bp):
AAAGAAAAAA
Found at i:7213281 original size:11 final size:11
Alignment explanation
Indices: 7213197--7213275 Score: 52
Period size: 11 Copynumber: 6.7 Consensus size: 11
7213187 AAGGGCATGC
7213197 AAAGAAAAAAA
1 AAAGAAAAAAA
**
7213208 AAA-AAAAGGA
1 AAAGAAAAAAA
* *
7213218 AAAGAGAGAAA
1 AAAGAAAAAAA
*
7213229 AATGAAAAAAAA
1 AAAG-AAAAAAA
7213241 TGAAATGAACAGAAAA
1 --AAA-GAA-A-AAAA
7213257 AAAGAAAAAAA
1 AAAGAAAAAAA
7213268 AAAGAAAA
1 AAAGAAAA
7213276 GGAAAATTTT
Statistics
Matches: 51, Mismatches: 10, Indels: 14
0.68 0.13 0.19
Matches are distributed among these distances:
10 8 0.16
11 21 0.41
12 6 0.12
13 3 0.06
14 7 0.14
15 2 0.04
16 4 0.08
ACGTcount: A:0.80, C:0.01, G:0.15, T:0.04
Consensus pattern (11 bp):
AAAGAAAAAAA
Found at i:7213785 original size:31 final size:33
Alignment explanation
Indices: 7213734--7213820 Score: 97
Period size: 31 Copynumber: 2.7 Consensus size: 33
7213724 TTTAAAGAAA
* ** *
7213734 AAGAAAAGAAAAGGTGAAAGAATG-AGAAAAT-
1 AAGAAAAGAAAAAGAAAAAGAAAGAAGAAAATG
7213765 AAGAAAAGAAAAAGAAAAAGAAAGAAGAAAATG
1 AAGAAAAGAAAAAGAAAAAGAAAGAAGAAAATG
* * *
7213798 AGGAAATGAAAAAGAAAAGGAAA
1 AAGAAAAGAAAAAGAAAAAGAAA
7213821 AAAAGAAGAA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 20 0.43
32 7 0.15
33 20 0.43
ACGTcount: A:0.70, C:0.00, G:0.24, T:0.06
Consensus pattern (33 bp):
AAGAAAAGAAAAAGAAAAAGAAAGAAGAAAATG
Found at i:7213792 original size:7 final size:6
Alignment explanation
Indices: 7213727--7213831 Score: 63
Period size: 6 Copynumber: 17.2 Consensus size: 6
7213717 AAACCCATTT
* ** **
7213727 AAAGAA AAAG-A AAAGAA AAGGTG AAAGAA TGAGAA AATA-AGA AAAGAA
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AA-AGA-A AAAGAA
* * *
7213775 AAAGAA AAAGAA AGAAGAA AATGAGGA AATGAA AAAGAA AAGGAA AAA-AA
1 AAAGAA AAAGAA A-AAGAA AA--AGAA AAAGAA AAAGAA AAAGAA AAAGAA
*
7213825 GAAGAA A
1 AAAGAA A
7213832 TAAATGATTG
Statistics
Matches: 73, Mismatches: 18, Indels: 16
0.68 0.17 0.15
Matches are distributed among these distances:
5 9 0.12
6 48 0.66
7 11 0.15
8 5 0.07
ACGTcount: A:0.72, C:0.00, G:0.23, T:0.05
Consensus pattern (6 bp):
AAAGAA
Found at i:7213823 original size:28 final size:27
Alignment explanation
Indices: 7213768--7213832 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 27
7213758 AGAAAATAAG
7213768 AAAAGAA-AAA-GAAAAAGAAAGAAGA
1 AAAAGAAGAAATGAAAAAGAAAGAAGA
* *
7213793 AAATGAGGAAATGAAAAAGAAAAGGAA-A
1 AAAAGAAGAAATGAAAAAG-AAA-GAAGA
7213821 AAAAGAAGAAAT
1 AAAAGAAGAAAT
7213833 AAATGATTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
25 5 0.16
26 3 0.09
27 7 0.22
28 14 0.44
29 3 0.09
ACGTcount: A:0.74, C:0.00, G:0.22, T:0.05
Consensus pattern (27 bp):
AAAAGAAGAAATGAAAAAGAAAGAAGA
Found at i:7213830 original size:40 final size:40
Alignment explanation
Indices: 7213727--7213838 Score: 104
Period size: 40 Copynumber: 2.8 Consensus size: 40
7213717 AAACCCATTT
* *
7213727 AAAGAAAAAGAAAAGAAAAGGTGAAA-GAATGAGAAAATAAGA
1 AAAGAAAAAGAAAA-AAAA--AGAAATAAATGAGAAAATAAGA
* * *
7213769 AAAGAAAAAGAAAAAGAAAGAAGA-AAATGAGGAAATGA-A
1 AAAGAAAAAGAAAAAAAAAGAA-ATAAATGAGAAAATAAGA
*
7213808 AAAGAAAAGGAAAAAAAGAAGAAATAAATGA
1 AAAGAAAAAGAAAAAAA-AAGAAATAAATGA
7213839 TTGATTAGAA
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
39 20 0.33
40 23 0.38
41 3 0.05
42 14 0.23
ACGTcount: A:0.71, C:0.00, G:0.22, T:0.06
Consensus pattern (40 bp):
AAAGAAAAAGAAAAAAAAAGAAATAAATGAGAAAATAAGA
Found at i:7217393 original size:16 final size:17
Alignment explanation
Indices: 7217369--7217401 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
7217359 AACTAGTGTA
7217369 AATAGAAAAATAAATTG
1 AATAGAAAAATAAATTG
7217386 AATA-AAAAATAAATTG
1 AATAGAAAAATAAATTG
7217402 TGTGGAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (17 bp):
AATAGAAAAATAAATTG
Found at i:7219185 original size:18 final size:18
Alignment explanation
Indices: 7219164--7219238 Score: 80
Period size: 18 Copynumber: 4.2 Consensus size: 18
7219154 TTTTTTTATT
*
7219164 TTTGTTTATTTTATTTTG
1 TTTGTTTATTTTGTTTTG
*
7219182 TTTGTGTATTTTGTTTTG
1 TTTGTTTATTTTGTTTTG
* *
7219200 TTGGTTTTTGTTTGTTTTG
1 TTTGTTTAT-TTTGTTTTG
* *
7219219 -TTGTTTTTTTTTTTTTG
1 TTTGTTTATTTTGTTTTG
7219236 TTT
1 TTT
7219239 TGGAAAATAA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
17 8 0.17
18 31 0.65
19 9 0.19
ACGTcount: A:0.04, C:0.00, G:0.17, T:0.79
Consensus pattern (18 bp):
TTTGTTTATTTTGTTTTG
Found at i:7219206 original size:22 final size:19
Alignment explanation
Indices: 7219190--7219237 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
7219180 TGTTTGTGTA
7219190 TTTTGTTTTGTTGGTTTTT
1 TTTTGTTTTGTTGGTTTTT
*
7219209 GTTTGTTTTGTT-GTTTTT
1 TTTTGTTTTGTTGGTTTTT
7219227 TTTT-TTTTGTT
1 TTTTGTTTTGTT
7219238 TTGGAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 7 0.26
18 9 0.33
19 11 0.41
ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81
Consensus pattern (19 bp):
TTTTGTTTTGTTGGTTTTT
Found at i:7219213 original size:14 final size:14
Alignment explanation
Indices: 7219163--7219215 Score: 56
Period size: 14 Copynumber: 3.8 Consensus size: 14
7219153 TTTTTTTTAT
* *
7219163 TTTTGTTTATTTTA
1 TTTTGTTTGTTGTA
7219177 TTTTGTTTG-TGTA
1 TTTTGTTTGTTGTA
7219190 TTTTGTTTTGTTGGT-
1 TTTTG-TTTGTT-GTA
7219205 TTTTGTTTGTT
1 TTTTGTTTGTT
7219216 TTGTTGTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
13 8 0.24
14 18 0.53
15 6 0.18
16 2 0.06
ACGTcount: A:0.06, C:0.00, G:0.19, T:0.75
Consensus pattern (14 bp):
TTTTGTTTGTTGTA
Found at i:7219215 original size:19 final size:17
Alignment explanation
Indices: 7219152--7219237 Score: 77
Period size: 18 Copynumber: 4.9 Consensus size: 17
7219142 TTCTTTCCCC
7219152 TTTTTTTT-TATTT-TTG
1 TTTTTTTTGT-TTTGTTG
* *
7219168 TTTATTTTATTTTGTTTG
1 TTTTTTTTGTTTTG-TTG
* *
7219186 TGTATTTTGTTTTGTTGG
1 TTTTTTTTGTTTTGTT-G
7219204 TTTTTGTTTGTTTTGTTG
1 TTTTT-TTTGTTTTGTTG
*
7219222 TTTTTTTTTTTTTGTT
1 TTTTTTTTGTTTTGTT
7219238 TTGGAAAATA
Statistics
Matches: 59, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
16 10 0.17
17 13 0.22
18 25 0.42
19 11 0.19
ACGTcount: A:0.05, C:0.00, G:0.15, T:0.80
Consensus pattern (17 bp):
TTTTTTTTGTTTTGTTG
Found at i:7219323 original size:36 final size:35
Alignment explanation
Indices: 7219267--7219373 Score: 124
Period size: 36 Copynumber: 3.0 Consensus size: 35
7219257 TTGGACATTG
* * *
7219267 CTACATGTTAAAAACATAAAAATGACCAAGACAATA
1 CTACAAGTTAAAAA-ATAAAAATGACCAGGACAACA
** **
7219303 CTGTAAGTCTAAAAAATAAAAATGACTGGGACAACA
1 CTACAAGT-TAAAAAATAAAAATGACCAGGACAACA
*
7219339 CTACAAGTTGAAAAATAAAAATGACCAGGACAACA
1 CTACAAGTTAAAAAATAAAAATGACCAGGACAACA
7219374 TCATAGATCA
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
35 24 0.41
36 28 0.48
37 6 0.10
ACGTcount: A:0.53, C:0.16, G:0.13, T:0.18
Consensus pattern (35 bp):
CTACAAGTTAAAAAATAAAAATGACCAGGACAACA
Found at i:7219389 original size:71 final size:70
Alignment explanation
Indices: 7219277--7219516 Score: 207
Period size: 71 Copynumber: 3.4 Consensus size: 70
7219267 CTACATGTTA
* * * * * * *
7219277 AAAACATAAAAATGACCAAGACAATA-CTGTAAGTCTAAAAAATAAAAATGACTGGGACAACACT
1 AAAA-ATAAAAATGACCAGGACAACATC-ATAAGTCAAAAAAATAAAGATGATTGGGATAACACT
7219341 ACAAGTTG
64 -CAAGTTG
* * *
7219349 AAAAATAAAAATGACCAGGACAACATCAT-AGATCACAAAAATAAAGATGATTGGGGTAAAAC-C
1 AAAAATAAAAATGACCAGGACAACATCATAAG-TCAAAAAAATAAAGATGATTGGGATAACACTC
7219412 AATGGTTG
65 AA--GTTG
* * * * ** *
7219420 AAAAACAAATATGACCGGGACAACATCGTAAGTCAAAAAAATAAAGATGATTTAGATAACATTGC
1 AAAAATAAAAATGACCAGGACAACATCATAAGTCAAAAAAATAAAGATGATTGGGATAACACT-C
**
7219485 AAGTAA
65 AAGTTG
* *
7219491 AAAAATAAAGATGACTAGGACAACAT
1 AAAAATAAAAATGACCAGGACAACAT
7219517 TGCAGGTAAA
Statistics
Matches: 135, Mismatches: 26, Indels: 15
0.77 0.15 0.09
Matches are distributed among these distances:
69 3 0.02
70 2 0.01
71 120 0.89
72 7 0.05
73 3 0.02
ACGTcount: A:0.53, C:0.13, G:0.16, T:0.18
Consensus pattern (70 bp):
AAAAATAAAAATGACCAGGACAACATCATAAGTCAAAAAAATAAAGATGATTGGGATAACACTCA
AGTTG
Found at i:7219493 original size:35 final size:37
Alignment explanation
Indices: 7219437--7219542 Score: 128
Period size: 35 Copynumber: 2.9 Consensus size: 37
7219427 AATATGACCG
* * * *
7219437 GGACAACATCGTAAGTCAAAAAAATAAAGATGATTTA
1 GGACAACATTGCAAGTAAAAAAAATAAAGATGATCTA
*
7219474 -GATAACATTGCAAGT-AAAAAAATAAAGATGA-CTA
1 GGACAACATTGCAAGTAAAAAAAATAAAGATGATCTA
* *
7219508 GGACAACATTGCAGGTAAAAAAAATAAAGTTGATC
1 GGACAACATTGCAAGTAAAAAAAATAAAGATGATC
7219543 GAAGCAATAC
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
34 2 0.03
35 29 0.49
36 27 0.46
37 1 0.02
ACGTcount: A:0.52, C:0.10, G:0.17, T:0.21
Consensus pattern (37 bp):
GGACAACATTGCAAGTAAAAAAAATAAAGATGATCTA
Found at i:7220788 original size:13 final size:12
Alignment explanation
Indices: 7220766--7220801 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 12
7220756 TATTTTTTTA
7220766 TTTTTTTTAATT
1 TTTTTTTTAATT
7220778 TTTTGTTTTAATT
1 TTTT-TTTTAATT
7220791 TTATTTTTTAA
1 TT-TTTTTTAA
7220802 AATTTTATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 4 0.18
13 16 0.73
14 2 0.09
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (12 bp):
TTTTTTTTAATT
Found at i:7227537 original size:15 final size:15
Alignment explanation
Indices: 7227519--7227557 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
7227509 AAAATTTTGA
7227519 CAAAAAAAATTCTTT
1 CAAAAAAAATTCTTT
**
7227534 CAAAAAATTTTTCTTT
1 CAAAAAA-AATTCTTT
7227550 CAAAAAAA
1 CAAAAAAA
7227558 TTCGTTTGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.54, C:0.13, G:0.00, T:0.33
Consensus pattern (15 bp):
CAAAAAAAATTCTTT
Found at i:7227708 original size:27 final size:25
Alignment explanation
Indices: 7227660--7227710 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
7227650 CAAAACCAAA
7227660 CAAAAAAAGAAAAAGAAAAAAATTC
1 CAAAAAAAGAAAAAGAAAAAAATTC
7227685 CAAAAAAA-AACAACAGAAACAAAATT
1 CAAAAAAAGAA-AA-AGAAA-AAAATT
7227711 TTTCAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 2 0.09
25 10 0.43
26 5 0.22
27 6 0.26
ACGTcount: A:0.75, C:0.12, G:0.06, T:0.08
Consensus pattern (25 bp):
CAAAAAAAGAAAAAGAAAAAAATTC
Found at i:7227797 original size:18 final size:18
Alignment explanation
Indices: 7227767--7227804 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
7227757 GTTGGCTAAT
*
7227767 AAAAAAAAGAAAATTTTG
1 AAAAAAAAGAAAACTTTG
7227785 AAAAACAAA-AAAACTTTG
1 AAAAA-AAAGAAAACTTTG
7227803 AA
1 AA
7227805 TCCAAGTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.68, C:0.05, G:0.08, T:0.18
Consensus pattern (18 bp):
AAAAAAAAGAAAACTTTG
Found at i:7228003 original size:37 final size:38
Alignment explanation
Indices: 7227952--7228029 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 38
7227942 AGTTGGAAAA
* * *
7227952 AATAAGATATTACATGCACTT-CATTTCATGAACATCTT
1 AATAAGATAGTACATGCA-TTCCATTACATGAACATCAT
*
7227990 AATAA-ATAGTACATGCATTCCATTACATGCACATCAT
1 AATAAGATAGTACATGCATTCCATTACATGAACATCAT
7228027 AAT
1 AAT
7228030 GGTAGTGTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
36 2 0.06
37 28 0.80
38 5 0.14
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (38 bp):
AATAAGATAGTACATGCATTCCATTACATGAACATCAT
Found at i:7230761 original size:24 final size:24
Alignment explanation
Indices: 7230734--7230785 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
7230724 TCATATTGTC
* *
7230734 ATTTGGTTTATGCTTATTTTTAAG
1 ATTTAGTTTATGATTATTTTTAAG
* * *
7230758 ATTTAGTTTTTTATTTTTTTTAAG
1 ATTTAGTTTATGATTATTTTTAAG
7230782 ATTT
1 ATTT
7230786 TTTTTAAAGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.21, C:0.02, G:0.12, T:0.65
Consensus pattern (24 bp):
ATTTAGTTTATGATTATTTTTAAG
Found at i:7231606 original size:13 final size:12
Alignment explanation
Indices: 7231588--7231661 Score: 53
Period size: 13 Copynumber: 5.8 Consensus size: 12
7231578 AAATAATAAT
*
7231588 AAAGAAAAAGTGA
1 AAAGAAAAAG-AA
7231601 AAAGAAAAAGAA
1 AAAGAAAAAGAA
7231613 AAAGAAAAA-AA
1 AAAGAAAAAGAA
*
7231624 TGAAATG-AAATGAA
1 --AAA-GAAAAAGAA
7231638 AAAGGAAAAATGAA
1 AAA-GAAAAA-GAA
7231652 AAATGAAAAA
1 AAA-GAAAAA
7231662 ATTTTGATTA
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
11 2 0.04
12 14 0.28
13 19 0.38
14 15 0.30
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (12 bp):
AAAGAAAAAGAA
Found at i:7231622 original size:19 final size:19
Alignment explanation
Indices: 7231588--7231662 Score: 55
Period size: 19 Copynumber: 3.8 Consensus size: 19
7231578 AAATAATAAT
**
7231588 AAAGAAAAAGTGAAAAGAA
1 AAAGAAAAAGAAAAAAGAA
7231607 AAAGAAAAAGAAAAAA-ATGA
1 AAAGAAAAAGAAAAAAGA--A
* * *
7231627 AATG-AAATGAAAAAGGAA
1 AAAGAAAAAGAAAAAAGAA
7231645 AAATGAAAAATGAAAAAA
1 AAA-GAAAAA-GAAAAAA
7231663 TTTTGATTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 10
0.70 0.13 0.17
Matches are distributed among these distances:
18 4 0.10
19 24 0.57
20 8 0.19
21 6 0.14
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (19 bp):
AAAGAAAAAGAAAAAAGAA
Found at i:7231638 original size:25 final size:25
Alignment explanation
Indices: 7231588--7231653 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
7231578 AAATAATAAT
*
7231588 AAAGAAAAAGTGAAAAGAAAAAGAA
1 AAAGAAAAAATGAAAAGAAAAAGAA
* *
7231613 AAAGAAAAAAATGAAATG-AAATGAA
1 AAAG-AAAAAATGAAAAGAAAAAGAA
*
7231638 AAAGGAAAAATGAAAA
1 AAAGAAAAAATGAAAA
7231654 ATGAAAAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
24 10 0.29
25 14 0.40
26 11 0.31
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (25 bp):
AAAGAAAAAATGAAAAGAAAAAGAA
Found at i:7231655 original size:31 final size:30
Alignment explanation
Indices: 7231598--7231659 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 30
7231588 AAAGAAAAAG
7231598 TGAAAAGAAAAAGAAAAAGAAAAAAATGAAA
1 TGAAAAGAAAAAGAAAAAG-AAAAAATGAAA
*
7231629 TGAAATGAAAAAGGAAAAATG-AAAAATGAAA
1 TGAAAAGAAAAA-GAAAAA-GAAAAAATGAAA
7231660 AAATTTTGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 21 0.75
32 6 0.21
33 1 0.04
ACGTcount: A:0.73, C:0.00, G:0.18, T:0.10
Consensus pattern (30 bp):
TGAAAAGAAAAAGAAAAAGAAAAAATGAAA
Found at i:7232136 original size:19 final size:19
Alignment explanation
Indices: 7232114--7232218 Score: 67
Period size: 19 Copynumber: 5.4 Consensus size: 19
7232104 AAAAAAAGGT
7232114 GAAAGAAAGAGAAAAAAAA
1 GAAAGAAAGAGAAAAAAAA
7232133 GAAAATGAAAG-GAAAAAAAA
1 G-AAA-GAAAGAGAAAAAAAA
* * *
7232153 CAAAATAAAG-GAAAATAAA
1 -GAAAGAAAGAGAAAAAAAA
*
7232172 GAACA-AAAGAAAAGAATAAGAA
1 GAA-AGAAAGAGAA-AA-AA-AA
*
7232194 GAAAGAAA-AGAAACAAAA
1 GAAAGAAAGAGAAAAAAAA
7232212 G-AAGAAA
1 GAAAGAAA
7232219 TGAATGATTG
Statistics
Matches: 69, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
17 6 0.09
18 9 0.13
19 18 0.26
20 18 0.26
21 10 0.14
22 8 0.12
ACGTcount: A:0.75, C:0.03, G:0.18, T:0.04
Consensus pattern (19 bp):
GAAAGAAAGAGAAAAAAAA
Found at i:7232137 original size:9 final size:9
Alignment explanation
Indices: 7232123--7232214 Score: 51
Period size: 9 Copynumber: 9.4 Consensus size: 9
7232113 TGAAAGAAAG
7232123 AGAAAAAAA
1 AGAAAAAAA
7232132 AGAAAATGAAA
1 AGAAAA--AAA
*
7232143 GGAAAAAAA
1 AGAAAAAAA
*
7232152 ACAAAATAAA
1 AGAAAA-AAA
* *
7232162 GGAAAATAA
1 AGAAAAAAA
7232171 AGAACAAAAGA
1 AGAA-AAAA-A
7232182 A-AAGAATAAGA
1 AGAA-AA-AA-A
*
7232193 AGAAAGAAA
1 AGAAAAAAA
*
7232202 AGAAACAAA
1 AGAAAAAAA
7232211 AGAA
1 AGAA
7232215 GAAATGAATG
Statistics
Matches: 65, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
9 31 0.48
10 16 0.25
11 16 0.25
12 2 0.03
ACGTcount: A:0.76, C:0.03, G:0.16, T:0.04
Consensus pattern (9 bp):
AGAAAAAAA
Found at i:7232143 original size:10 final size:9
Alignment explanation
Indices: 7232123--7232184 Score: 54
Period size: 9 Copynumber: 6.7 Consensus size: 9
7232113 TGAAAGAAAG
*
7232123 AGAAAAAAA
1 AGAAAATAA
7232132 AGAAAATGAA
1 AGAAAAT-AA
*
7232142 AGGAAAAAAA
1 A-GAAAATAA
*
7232152 ACAAAATAA
1 AGAAAATAA
7232161 AGGAAAATAA
1 A-GAAAATAA
*
7232171 AGAACA-AA
1 AGAAAATAA
7232179 AGAAAA
1 AGAAAA
7232185 GAATAAGAAG
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
8 7 0.16
9 17 0.40
10 14 0.33
11 5 0.12
ACGTcount: A:0.77, C:0.03, G:0.15, T:0.05
Consensus pattern (9 bp):
AGAAAATAA
Found at i:7232147 original size:20 final size:20
Alignment explanation
Indices: 7232118--7232174 Score: 80
Period size: 19 Copynumber: 2.9 Consensus size: 20
7232108 AAAGGTGAAA
7232118 GAAAGAGAAAAAAAAGAAAAT
1 GAAAG-GAAAAAAAAGAAAAT
*
7232139 GAAAGGAAAAAAAACAAAAT
1 GAAAGGAAAAAAAAGAAAAT
*
7232159 -AAAGGAAAATAAAGAA
1 GAAAGGAAAAAAAAGAA
7232175 CAAAAGAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 14 0.42
20 14 0.42
21 5 0.15
ACGTcount: A:0.75, C:0.02, G:0.18, T:0.05
Consensus pattern (20 bp):
GAAAGGAAAAAAAAGAAAAT
Found at i:7232150 original size:22 final size:22
Alignment explanation
Indices: 7232115--7232214 Score: 59
Period size: 22 Copynumber: 4.7 Consensus size: 22
7232105 AAAAAAGGTG
*
7232115 AAAGAAAGAGAAAA-AAAAGA-A
1 AAAGAAAG-GAAAAGAAAAAACA
*
7232136 AATGAAAGG--AA-AAAAAACA
1 AAAGAAAGGAAAAGAAAAAACA
* * *
7232155 AAATAAAGGAAAATAAAGAACA
1 AAAGAAAGGAAAAGAAAAAACA
* * *
7232177 AAAGAAAAGAATAAGAAGAAAGA
1 AAAGAAAGGAA-AAGAAAAAACA
*
7232200 AAAGAAA-CAAAAGAA
1 AAAGAAAGGAAAAGAA
7232215 GAAATGAATG
Statistics
Matches: 62, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
18 7 0.11
19 8 0.13
20 1 0.02
21 14 0.23
22 18 0.29
23 14 0.23
ACGTcount: A:0.76, C:0.03, G:0.17, T:0.04
Consensus pattern (22 bp):
AAAGAAAGGAAAAGAAAAAACA
Found at i:7232186 original size:5 final size:5
Alignment explanation
Indices: 7232115--7232206 Score: 53
Period size: 5 Copynumber: 17.4 Consensus size: 5
7232105 AAAAAAGGTG
* * * *
7232115 AAAGA AAGAGA AAA-A AAAGA AAATGA AAGGA AAA-A AAACA AAATA AAGGA
1 AAAGA AA-AGA AAAGA AAAGA AAA-GA AAAGA AAAGA AAAGA AAAGA AAAGA
* *
7232165 AAATAA AGAACA AAAGA AAAGA ATAAGAA GAAAGA AAAGA AA
1 AAA-GA A-AAGA AAAGA AAAGA A-AAG-A -AAAGA AAAGA AA
7232207 CAAAAGAAGA
Statistics
Matches: 69, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
4 8 0.12
5 37 0.54
6 17 0.25
7 6 0.09
8 1 0.01
ACGTcount: A:0.76, C:0.02, G:0.17, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:7233828 original size:17 final size:17
Alignment explanation
Indices: 7233808--7233865 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
7233798 CCCTTTTGCA
7233808 AATCTTTGATATTTGTG
1 AATCTTTGATATTTGTG
*
7233825 AATCTTTGACT-CTTGTG
1 AATCTTTGA-TATTTGTG
* * *
7233842 AATATTTGAAATTTCTG
1 AATCTTTGATATTTGTG
*
7233859 AGTCTTT
1 AATCTTT
7233866 AACCCCTTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
17 31 0.97
18 1 0.03
ACGTcount: A:0.24, C:0.10, G:0.16, T:0.50
Consensus pattern (17 bp):
AATCTTTGATATTTGTG
Found at i:7234198 original size:41 final size:42
Alignment explanation
Indices: 7234139--7234244 Score: 117
Period size: 41 Copynumber: 2.5 Consensus size: 42
7234129 CTATTATGAC
* **
7234139 TCTAGAGAT-TTCCAAACTGTGAATTATTTTTTATACTGTGAA
1 TCTAGAGATCTTCC-AACTGTGAATCATTTACTATACTGTGAA
* *
7234181 TCTAGAG-TCTTCCAACTGTGAATCGTTTACTCTACTGTGAA
1 TCTAGAGATCTTCCAACTGTGAATCATTTACTATACTGTGAA
* * *
7234222 TCTAGAGTTCTCCCAACTATGAA
1 TCTAGAGATCTTCCAACTGTGAA
7234245 CTGTTTACTT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
41 31 0.56
42 24 0.44
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (42 bp):
TCTAGAGATCTTCCAACTGTGAATCATTTACTATACTGTGAA
Found at i:7234251 original size:42 final size:41
Alignment explanation
Indices: 7234172--7234253 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 41
7234162 TTATTTTTTA
* *
7234172 TACTGTGAATCTAGAGTCTTCCAACTGTGAATCGTTTACTC
1 TACTGTGAATCTAGAGTCTCCCAACTATGAATCGTTTACTC
7234213 TACTGTGAATCTAGAGTTCTCCCAACTATGAA-CTGTTTACT
1 TACTGTGAATCTAGAG-TCTCCCAACTATGAATC-GTTTACT
7234254 TTATTGTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
41 17 0.46
42 20 0.54
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.37
Consensus pattern (41 bp):
TACTGTGAATCTAGAGTCTCCCAACTATGAATCGTTTACTC
Found at i:7234482 original size:42 final size:41
Alignment explanation
Indices: 7234309--7234566 Score: 171
Period size: 41 Copynumber: 6.3 Consensus size: 41
7234299 ATTATGAATT
* * * * * *
7234309 AATCATTTACTCTGTTGTAAATCCAAAGTCTTCCAACTGTG
1 AATCATTTACTCTATTGTGAATCTAGAGTTTTCCAACTATG
** * * * * * *
7234350 AATTGTTTACTCTACTATGAATC-AGAATTATCCTAATTGTG
1 AATCATTTACTCTATTGTGAATCTAGAGTTTTCC-AACTATG
* * * * *
7234391 AAACGTTTACTCTACTAG-G-ATCTAGAGTCTTCTAACTATG
1 AATCATTTACTCTA-TTGTGAATCTAGAGTTTTCCAACTATG
** * * *
7234431 AATTGTTTACTCTATTATGAATCTAAAGTTTTCCCAACTATT
1 AATCATTTACTCTATTGTGAATCTAGAGTTTT-CCAACTATG
* **
7234473 AATCATTTACTCTATTGTGAATTTAGAGTCTTTTAAACTATG
1 AATCATTTACTCTATTGTGAATCTAGAGT-TTTCCAACTATG
* * * *
7234515 AATCGTCTACTCTATTGTGAATCCAGAGTCTTCCAACTATG
1 AATCATTTACTCTATTGTGAATCTAGAGTTTTCCAACTATG
*
7234556 AACCATTTACT
1 AATCATTTACT
7234567 TTGATGTAAA
Statistics
Matches: 162, Mismatches: 48, Indels: 14
0.72 0.21 0.06
Matches are distributed among these distances:
39 1 0.01
40 27 0.17
41 69 0.43
42 62 0.38
43 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.40
Consensus pattern (41 bp):
AATCATTTACTCTATTGTGAATCTAGAGTTTTCCAACTATG
Found at i:7234566 original size:83 final size:83
Alignment explanation
Indices: 7234413--7234566 Score: 211
Period size: 84 Copynumber: 1.9 Consensus size: 83
7234403 TACTAGGATC
* * * * * *
7234413 TAGAGTCTTCTAACTATGAATTGTTTACTCTATTATGAATCTAAAGTTTTCCCAACTATTAATCA
1 TAGAGTCTTCTAACTATGAATCGTCTACTCTATTATGAATCCAAAGTCTTCCCAACTATGAACCA
7234478 TTTACTCTATTGTGAATT
66 TTTACTCTATTGTGAATT
* * *
7234496 TAGAGTCTTTTAAACTATGAATCGTCTACTCTATTGTGAATCCAGAGTCTT-CCAACTATGAACC
1 TAGAGTCTTCT-AACTATGAATCGTCTACTCTATTATGAATCCAAAGTCTTCCCAACTATGAACC
7234560 ATTTACT
65 ATTTACT
7234567 TTGATGTAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
83 28 0.46
84 33 0.54
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.41
Consensus pattern (83 bp):
TAGAGTCTTCTAACTATGAATCGTCTACTCTATTATGAATCCAAAGTCTTCCCAACTATGAACCA
TTTACTCTATTGTGAATT
Found at i:7234704 original size:41 final size:41
Alignment explanation
Indices: 7234593--7235357 Score: 440
Period size: 42 Copynumber: 18.5 Consensus size: 41
7234583 GTTCTTCTAA
* * *
7234593 TTGTGAATCTAAAGTCTTTCAAACTATAAATCATTTACTCT-
1 TTGTGAATCTAGAGTC-TTCCAACTATGAATCATTTACTCTG
* * * ** *
7234634 TTATAAATTTAGAGT-TATTTAACTTTGAATCATTTACTCTG
1 TTGTGAATCTAGAGTCT-TCCAACTATGAATCATTTACTCTG
* * *
7234675 TTGTGAA-CTTAGAGCCCTCCAACTATGAATCATTTACTCTA
1 TTGTGAATC-TAGAGTCTTCCAACTATGAATCATTTACTCTG
* * *
7234716 TTGTGAATCTAGAGTCTTCTAACTATGAATCATTCACTCTAC
1 TTGTGAATCTAGAGTCTTCCAACTATGAATCATTTACTCT-G
* * *
7234758 TT-TGAATCAAGAGTTCTTCAAACTATAAATCATTTACTCTG
1 TTGTGAATCTAGAG-TCTTCCAACTATGAATCATTTACTCTG
* * * *
7234799 TTGTGAACCTAGAGTCCTCTAACTATGAATCATTTACTCTA
1 TTGTGAATCTAGAGTCTTCCAACTATGAATCATTTACTCTG
* * * * * * *
7234840 TTGTAAATTTTAGAGTCTTCTAATTGTGAATCATTTACTTTC
1 TTGTGAA-TCTAGAGTCTTCCAACTATGAATCATTTACTCTG
* * * * * *
7234882 TTGTAAATCCATAGTCTTCCAACCATGAATCATTTATTTTG
1 TTGTGAATCTAGAGTCTTCCAACTATGAATCATTTACTCTG
* * *
7234923 TTGTGAATCCAGAGTTTTCCCAACTATGAATCATTTACTTTG
1 TTGTGAATCTAGAGTCTT-CCAACTATGAATCATTTACTCTG
* * * * *
7234965 TTATGAATCTAGAGTCTTCAAACTATGAGTCGTTTACTCTA
1 TTGTGAATCTAGAGTCTTCCAACTATGAATCATTTACTCTG
* * * * * * * *
7235006 CTATAAATATGGAGT-TCTCCTAATTATAAATCATTTACTCTA
1 TTGTGAATCTAGAGTCT-TCC-AACTATGAATCATTTACTCTG
* * * * * *
7235048 ATGTCAAT-TCAGAGTTCTCCCAACTGTGAATCATTTGCT-TT
1 TTGTGAATCT-AGAG-TCTTCCAACTATGAATCATTTACTCTG
* * * *
7235089 TATGTAAATCTAGAGTTCTCCCAACTGTGACTCATTTACTCTG
1 T-TGTGAATCTAGAG-TCTTCCAACTATGAATCATTTACTCTG
* * * * * * * * * *
7235132 TTATGTATCCAGAGTTTTCAAATTGTAAATCATTTACTTTA
1 TTGTGAATCTAGAGTCTTCCAACTATGAATCATTTACTCTG
* * * * * *
7235173 TTGTGAATTTAGAGTCTTTCAAAT-TGTAAATCGTTTACTTTA
1 TTGTGAATCTAGAGTCTTCCAACTATG--AATCATTTACTCTG
* * * *
7235215 TTATGAAT-TCAAAGTCTTTCAAACTATGAATTATTTACTCTG
1 TTGTGAATCT-AGAGTC-TTCCAACTATGAATCATTTACTCTG
* * *
7235257 TTATGAATCTAGAGTCCTTTCAA-TATGAATC-TTTACTCTA
1 TTGTGAATCTAGAGT-CTTCCAACTATGAATCATTTACTCTG
* * * * * *
7235297 TTGTGAAT-TCAAAATCTT-TAACCATGAATCATTTTCTTTG
1 TTGTGAATCT-AGAGTCTTCCAACTATGAATCATTTACTCTG
* *
7235337 ATGTGAATCCAGAGTCTTCCA
1 TTGTGAATCTAGAGTCTTCCA
7235358 TTTTTAAATC
Statistics
Matches: 558, Mismatches: 136, Indels: 60
0.74 0.18 0.08
Matches are distributed among these distances:
38 2 0.00
39 12 0.02
40 58 0.10
41 233 0.42
42 237 0.42
43 13 0.02
44 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (41 bp):
TTGTGAATCTAGAGTCTTCCAACTATGAATCATTTACTCTG
Found at i:7234725 original size:146 final size:147
Alignment explanation
Indices: 7234446--7234746 Score: 362
Period size: 146 Copynumber: 2.1 Consensus size: 147
7234436 TTTACTCTAT
* * * *
7234446 TATGAATCTAAAGTTTTCCCAACTATTAATCATTTACTCTATTGTGAATTTAGAGTCTTTTAAAC
1 TATGAATCTAAAGTTTTCCAAACTATAAATCATTTACTCTATTATAAATTTAGAGTCTTTTAAAC
* * * *
7234511 TATGAATCGTCTACTCTATTGTGAATCCAGAGTCTTCCAACTATGAACCATTTACTTTGATGTAA
66 TATGAATCATCTACTCTATTGTGAATCCAGAGCCCTCCAACTATGAACCATTTACTCTGATGTAA
*
7234576 ATCTAAAGTTCTTCTAAT
131 ATCTAAAG-TCTTCTAAC
*
7234594 TGTGAATCTAAAGTCTTT-CAAACTATAAATCATTTACTCT-TTATAAATTTAGAGT-TATTT-A
1 TATGAATCTAAAGT-TTTCCAAACTATAAATCATTTACTCTATTATAAATTTAGAGTCT-TTTAA
* * * * *
7234655 ACTTTGAATCATTTACTCTGTTGTGAA-CTTAGAGCCCTCCAACTATGAATCATTTACTCT-ATT
64 ACTATGAATCATCTACTCTATTGTGAATC-CAGAGCCCTCCAACTATGAACCATTTACTCTGA-T
* *
7234718 GTGAATCTAGAGTCTTCTAAC
127 GTAAATCTAAAGTCTTCTAAC
7234739 TATGAATC
1 TATGAATC
7234747 ATTCACTCTA
Statistics
Matches: 131, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
145 17 0.13
146 62 0.47
147 16 0.12
148 33 0.25
149 3 0.02
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (147 bp):
TATGAATCTAAAGTTTTCCAAACTATAAATCATTTACTCTATTATAAATTTAGAGTCTTTTAAAC
TATGAATCATCTACTCTATTGTGAATCCAGAGCCCTCCAACTATGAACCATTTACTCTGATGTAA
ATCTAAAGTCTTCTAAC
Found at i:7234804 original size:83 final size:84
Alignment explanation
Indices: 7234588--7235330 Score: 350
Period size: 83 Copynumber: 9.0 Consensus size: 84
7234578 CTAAAGTTCT
* * * *
7234588 TCTAATTGTGAATCTAA-AG-TCTTTCAAACTATAAATCATTTACTCT-TTATAAATTTAGAGT-
1 TCTACTTGTGAATC-AAGAGTTC-TTCAAACTATAAATCATTTACTCTGTTGTGAATCTAGAGTC
* *
7234649 TATTTAACTTTGAATCATTTAC
64 T-TCTAACTATGAATCATTTAC
* * * * * * *
7234671 TCT-GTTGTGAA-CTTAGAG-CCCTCCAACTATGAATCATTTACTCTATTGTGAATCTAGAGTCT
1 TCTACTTGTGAATC-AAGAGTTCTTCAAACTATAAATCATTTACTCTGTTGTGAATCTAGAGTCT
*
7234733 TCTAACTATGAATCATTCAC
65 TCTAACTATGAATCATTTAC
* *
7234753 TCTACTT-TGAATCAAGAGTTCTTCAAACTATAAATCATTTACTCTGTTGTGAACCTAGAGTCCT
1 TCTACTTGTGAATCAAGAGTTCTTCAAACTATAAATCATTTACTCTGTTGTGAATCTAGAGTCTT
7234817 CTAACTATGAATCATTTAC
66 CTAACTATGAATCATTTAC
* ** * * * * * * * * *
7234836 TCTA-TTGTAAATTTTAGAG-TCTTCTAATTGTGAATCATTTACTTTCTTGTAAATCCATAGTCT
1 TCTACTTGTGAA-TCAAGAGTTCTTCAAACTATAAATCATTTACTCTGTTGTGAATCTAGAGTCT
* *
7234899 TCCAACCATGAATCATTTA-
65 TCTAACTATGAATCATTTAC
* ** * * * * *
7234918 TTTTGTTGTGAATCCAGAGTT-TTCCCAACTATGAATCATTTACTTTGTTATGAATCTAGAGTCT
1 TCTACTTGTGAATCAAGAGTTCTT-CAAACTATAAATCATTTACTCTGTTGTGAATCTAGAGTCT
* * *
7234982 TCAAACTATGAGTCGTTTAC
65 TCTAACTATGAATCATTTAC
* * * * * * ** *
7235002 TCTAC-TATAAAT-ATGGAGTTCTCCTAATTATAAATCATTTACTCTAATGTCAAT-TCAGAGTT
1 TCTACTTGTGAATCA-AGAGTTCTTCAAACTATAAATCATTTACTCTGTTGTGAATCT-AGAG-T
* * * *
7235064 CTCCCAACTGTGAATCATTTGC
63 CTTCTAACTATGAATCATTTAC
* * * * * * * * * * * *
7235086 T-T-TTATGTAAATCTAGAGTTCTCCCAACTGTGACTCATTTACTCTGTTATGTATCCAGAGTTT
1 TCTACT-TGTGAATCAAGAGTTCTTCAAACTATAAATCATTTACTCTGTTGTGAATCTAGAGTCT
* * * *
7235149 TCAAATTGTAAATCATTTAC
65 TCTAACTATGAATCATTTAC
* ** * * * * * * *
7235169 TTTA-TTGTGAATTTAGAG-TCTTTCAAATTGTAAATCGTTTACTTTATTATGAAT-TCAAAGTC
1 TCTACTTGTGAATCAAGAGTTC-TTCAAACTATAAATCATTTACTCTGTTGTGAATCT-AGAGTC
* *
7235231 TTTCAAACTATGAATTATTTAC
64 -TTCTAACTATGAATCATTTAC
* * * * * * * *
7235253 TCT-GTTATGAATCTAGAGTCCTTTC-AA-TATGAATC-TTTACTCTATTGTGAAT-TCAAAATC
1 TCTACTTGTGAATCAAGAGTTC-TTCAAACTATAAATCATTTACTCTGTTGTGAATCT-AGAGTC
*
7235313 TT-TAACCATGAATCATTT
64 TTCTAACTATGAATCATTT
7235331 TCTTTGATGT
Statistics
Matches: 505, Mismatches: 128, Indels: 57
0.73 0.19 0.08
Matches are distributed among these distances:
80 13 0.03
81 26 0.05
82 86 0.17
83 275 0.54
84 100 0.20
85 5 0.01
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.41
Consensus pattern (84 bp):
TCTACTTGTGAATCAAGAGTTCTTCAAACTATAAATCATTTACTCTGTTGTGAATCTAGAGTCTT
CTAACTATGAATCATTTAC
Found at i:7235040 original size:166 final size:165
Alignment explanation
Indices: 7234593--7235251 Score: 456
Period size: 166 Copynumber: 4.0 Consensus size: 165
7234583 GTTCTTCTAA
* * * * **
7234593 TTGTGAATCTAA-AGTCTTT-CAAACTATAAATCATTTACTCT-TTATAAATTTAGAGT-TATTT
1 TTGTGAATC-AAGAGT-TTTCCCAACTATGAATCATTTACTCTGTTATGAATCTAGAGTCT-TCA
* ** * * * * * *
7234654 AACTTTGAATCATTTACTCTGTTGTGAACT-TAGAGCCCTCC-AACTATGAATCATTTACTCTAT
63 AACTATGAATCATTTACTCTACTATAAATTATAGAG-TCTCCTAATTATAAATCATTTACTCTAT
* * * * **
7234717 TGTGAATCTAGAGTCTTCTAACTATGAATCATTCACTCTAC
127 TGTAAATCCAGAGTCTTCCAACTATGAATCATTTA-T-TTT
* * * * * *
7234758 TT-TGAATCAAGAGTTCTT-CAAACTATAAATCATTTACTCTGTTGTGAACCTAGAGTCCTCTAA
1 TTGTGAATCAAGAGTT-TTCCCAACTATGAATCATTTACTCTGTTATGAATCTAGAGTCTTCAAA
* * * * * * * *
7234821 CTATGAATCATTTACTCTATTGTAAATTTTAGAGTCTTCTAATTGTGAATCATTTACTTTCTTGT
65 CTATGAATCATTTACTCTACTATAAATTATAGAGTCTCCTAATTATAAATCATTTACTCTATTGT
* *
7234886 AAATCCATAGTCTTCCAACCATGAATCATTTATTTT
130 AAATCCAGAGTCTTCCAACTATGAATCATTTATTTT
* *
7234922 GTTGTGAATCCAGAGTTTTCCCAACTATGAATCATTTACTTTGTTATGAATCTAGAGTCTTCAAA
1 -TTGTGAATCAAGAGTTTTCCCAACTATGAATCATTTACTCTGTTATGAATCTAGAGTCTTCAAA
* * * *
7234987 CTATGAGTCGTTTACTCTACTATAAA-TATGGAGTTCTCCTAATTATAAATCATTTACTCTAATG
65 CTATGAATCATTTACTCTACTATAAATTATAGAG-TCTCCTAATTATAAATCATTTACTCTATTG
* * * * *
7235051 TCAATTCAGAGTTCTCCCAACTGTGAATCATTTGCTTTT
129 TAAATCCAGAG-TCTTCCAACTATGAATCATTT-ATTTT
* * * * * * * * * *
7235090 ATGTAAATCTAGAGTTCTCCCAACTGTGACTCATTTACTCTGTTATGTATCCAGAGTTTTCAAAT
1 TTGTGAATCAAGAGTTTTCCCAACTATGAATCATTTACTCTGTTATGAATCTAGAGTCTTCAAAC
* * * * * * * * * * * *
7235155 TGTAAATCATTTACTTTATTGTGAATT-TAGAGTCTTTCAAATTGTAAATCGTTTACTTTATTAT
66 TATGAATCATTTACTCTACTATAAATTATAGAGTC-TCCTAATTATAAATCATTTACTCTATTGT
* * * * *
7235219 GAATTCAAAGTCTTTCAAACTATGAATTATTTA
130 AAATCCAGAGTC-TTCCAACTATGAATCATTTA
7235252 CTCTGTTATG
Statistics
Matches: 394, Mismatches: 85, Indels: 29
0.78 0.17 0.06
Matches are distributed among these distances:
163 3 0.01
164 34 0.09
165 54 0.14
166 160 0.41
167 138 0.35
168 5 0.01
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.41
Consensus pattern (165 bp):
TTGTGAATCAAGAGTTTTCCCAACTATGAATCATTTACTCTGTTATGAATCTAGAGTCTTCAAAC
TATGAATCATTTACTCTACTATAAATTATAGAGTCTCCTAATTATAAATCATTTACTCTATTGTA
AATCCAGAGTCTTCCAACTATGAATCATTTATTTT
Found at i:7235345 original size:80 final size:83
Alignment explanation
Indices: 7235159--7235352 Score: 211
Period size: 80 Copynumber: 2.4 Consensus size: 83
7235149 TCAAATTGTA
* *
7235159 AATCATTTACTTT-ATTGTGAATTTAGAGT-CTTTCAAATTGTAAATCGTTTACTTTATTATGAA
1 AATCATTTACTTTGA-TGTGAATCTAGAGTCCTTTCAAATTG-AAATCGTTTACTCTATTATGAA
* *
7235222 TTCAAAGTCTTTCAAACTATG
64 TTCAAAATCTTT-AAACCATG
* * * * *
7235243 AATTATTTACTCTGTTATGAATCTAGAGTCCTTTC-AATATG-AATC-TTTACTCTATTGTGAAT
1 AATCATTTACTTTGATGTGAATCTAGAGTCCTTTCAAAT-TGAAATCGTTTACTCTATTATGAAT
7235305 TCAAAATCTTT-AACCATG
65 TCAAAATCTTTAAACCATG
* *
7235323 AATCATTTTCTTTGATGTGAATCCAGAGTC
1 AATCATTTACTTTGATGTGAATCTAGAGTC
7235353 TTCCATTTTT
Statistics
Matches: 92, Mismatches: 15, Indels: 10
0.79 0.13 0.09
Matches are distributed among these distances:
80 30 0.33
82 25 0.27
83 4 0.04
84 26 0.28
85 7 0.08
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.43
Consensus pattern (83 bp):
AATCATTTACTTTGATGTGAATCTAGAGTCCTTTCAAATTGAAATCGTTTACTCTATTATGAATT
CAAAATCTTTAAACCATG
Found at i:7235440 original size:26 final size:24
Alignment explanation
Indices: 7235388--7235462 Score: 80
Period size: 26 Copynumber: 3.0 Consensus size: 24
7235378 TTGTGAATCT
* **
7235388 AACAA-AAAACAAAAACAAAAACAA
1 AACAACAAAAGAAAAA-AAAAATGA
7235412 AACAACAAATAGAACAAAAAAAATGA
1 AACAACAAA-AGAA-AAAAAAAATGA
*
7235438 AACAACAAAATAAAAAAAAAATGA
1 AACAACAAAAGAAAAAAAAAATGA
7235462 A
1 A
7235463 CCAAAGAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
24 17 0.39
25 6 0.14
26 18 0.41
27 3 0.07
ACGTcount: A:0.79, C:0.12, G:0.04, T:0.05
Consensus pattern (24 bp):
AACAACAAAAGAAAAAAAAAATGA
Found at i:7235803 original size:31 final size:31
Alignment explanation
Indices: 7235681--7235803 Score: 113
Period size: 31 Copynumber: 4.0 Consensus size: 31
7235671 TGTGGTTCGG
*
7235681 TCTTGGTCACTTCATTTGACTTGTC-ATTTAG
1 TCTTGGTCACTTCATTTGACTTG-CAATTTAC
**** ** *
7235712 TCCCAATCACTTCATTTGACTTGCAGCTTAT
1 TCTTGGTCACTTCATTTGACTTGCAATTTAC
* * * *
7235743 TTTTTGTCACTTCATTCGACTTGCGATTTAC
1 TCTTGGTCACTTCATTTGACTTGCAATTTAC
*
7235774 TCTTGGTCACTTTATTTGACTTGCAATTTA
1 TCTTGGTCACTTCATTTGACTTGCAATTTA
7235804 GTTCCAATCA
Statistics
Matches: 69, Mismatches: 22, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
30 1 0.01
31 68 0.99
ACGTcount: A:0.19, C:0.22, G:0.13, T:0.46
Consensus pattern (31 bp):
TCTTGGTCACTTCATTTGACTTGCAATTTAC
Found at i:7235876 original size:31 final size:30
Alignment explanation
Indices: 7235810--7235877 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 30
7235800 TTTAGTTCCA
* * *
7235810 ATCA-TTTGTTCAACTTATGGTTTAGTCCG
1 ATCACTTTGTTCAACTTACGGTTCAATCCG
*
7235839 AGTCACTTTGTTCAACTTACGGTTCAATCTTG
1 A-TCACTTTGTTCAACTTACGGTTCAATC-CG
7235871 ATCACTT
1 ATCACTT
7235878 CATTCTTGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 1 0.03
30 3 0.09
31 26 0.81
32 2 0.06
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.43
Consensus pattern (30 bp):
ATCACTTTGTTCAACTTACGGTTCAATCCG
Found at i:7236466 original size:111 final size:109
Alignment explanation
Indices: 7236311--7236531 Score: 347
Period size: 111 Copynumber: 2.0 Consensus size: 109
7236301 AGCTCAAGTC
* * *
7236311 AATTCTTAAAATTCACAATCAAATTAGAACGAATATTGGTTAAGATTGAAATTTGTGATTTTAAA
1 AATTCTTAAAATTCAAAATCAAATTAGAACGAATATTGGCTAAGATCGAAATTTGTGATTTTAAA
*
7236376 GCACTAAAAACCTTGATTGCATTTCGAGAAGGGATAAAATTACCAA
66 GCACTAAAAACCTTGATTGCATTTCGAGAA-AGATAAAATT-CCAA
*
7236422 AATTCTTAAAATTCAAAATCAAATTAGAA-TAA-ATGTGGACTAAGATCGAAATTTGTGATTTTA
1 AATTCTTAAAATTCAAAATCAAATTAGAACGAATAT-TGG-CTAAGATCGAAATTTGTGATTTTA
7236485 AAGCACTAAAAACCTTGATTGCATTTCGAGAAAGATAAAATTCCAA
64 AAGCACTAAAAACCTTGATTGCATTTCGAGAAAGATAAAATTCCAA
7236531 A
1 A
7236532 TATCTTTTAG
Statistics
Matches: 103, Mismatches: 5, Indels: 6
0.90 0.04 0.05
Matches are distributed among these distances:
109 7 0.07
110 14 0.14
111 82 0.80
ACGTcount: A:0.44, C:0.12, G:0.14, T:0.31
Consensus pattern (109 bp):
AATTCTTAAAATTCAAAATCAAATTAGAACGAATATTGGCTAAGATCGAAATTTGTGATTTTAAA
GCACTAAAAACCTTGATTGCATTTCGAGAAAGATAAAATTCCAA
Found at i:7241335 original size:101 final size:101
Alignment explanation
Indices: 7241160--7241361 Score: 359
Period size: 101 Copynumber: 2.0 Consensus size: 101
7241150 TTCTTTTGGG
*
7241160 GCTACTTTGGAATAGGTTTAGAAGGAACAATAGTCTTCGATGAGCCACTTTTATTGATATAACCT
1 GCTACTTTGGAATACGTTTAGAAGGAACAATAGTCTTCGATGAGCCACTTTTATTGATATAACCT
* *
7241225 TCTTGAGACCCAAATCTTAAGATGTTACCACAAGCC
66 TCTCGAGACCCAAATCTTAAGATATTACCACAAGCC
* *
7241261 GCTACTTTGGAATACGTTTAGAAGGAATAATAGTCTTCGATGAGCCATTTTTATTGATATAACCT
1 GCTACTTTGGAATACGTTTAGAAGGAACAATAGTCTTCGATGAGCCACTTTTATTGATATAACCT
7241326 TCTCGAGACCCAAATCTTAAGATATTACCACAAGCC
66 TCTCGAGACCCAAATCTTAAGATATTACCACAAGCC
7241362 TCATTTTGTT
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 96 1.00
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (101 bp):
GCTACTTTGGAATACGTTTAGAAGGAACAATAGTCTTCGATGAGCCACTTTTATTGATATAACCT
TCTCGAGACCCAAATCTTAAGATATTACCACAAGCC
Found at i:7242965 original size:17 final size:17
Alignment explanation
Indices: 7242945--7242981 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
7242935 AAAACATAGG
7242945 AAAGAAAAAAAAGAAAA
1 AAAGAAAAAAAAGAAAA
* *
7242962 AAAGAAAAGAGAGAAAA
1 AAAGAAAAAAAAGAAAA
7242979 AAA
1 AAA
7242982 TATTTGCTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (17 bp):
AAAGAAAAAAAAGAAAA
Found at i:7242969 original size:13 final size:13
Alignment explanation
Indices: 7242944--7242981 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
7242934 AAAAACATAG
7242944 GAAAGAAAAAAAA
1 GAAAGAAAAAAAA
7242957 GAAA-AAAAGAAAA
1 GAAAGAAAA-AAAA
*
7242970 GAGAGAAAAAAA
1 GAAAGAAAAAAA
7242982 TATTTGCTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 4 0.18
13 14 0.64
14 4 0.18
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (13 bp):
GAAAGAAAAAAAA
Found at i:7243946 original size:14 final size:14
Alignment explanation
Indices: 7243927--7243982 Score: 58
Period size: 14 Copynumber: 3.6 Consensus size: 14
7243917 TGTGACATAG
7243927 CCTTAAACCCTAAA
1 CCTTAAACCCTAAA
7243941 CCTTAAACCACCTCCCAAA
1 CCTTAAA-C-CCT---AAA
*
7243960 CCCTAAACCCTAAA
1 CCTTAAACCCTAAA
7243974 CCTTAAACC
1 CCTTAAACC
7243983 ACCTCCCAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 18 0.51
15 1 0.03
16 3 0.09
17 3 0.09
18 1 0.03
19 9 0.26
ACGTcount: A:0.39, C:0.43, G:0.00, T:0.18
Consensus pattern (14 bp):
CCTTAAACCCTAAA
Found at i:7243966 original size:19 final size:19
Alignment explanation
Indices: 7243938--7244075 Score: 90
Period size: 19 Copynumber: 7.3 Consensus size: 19
7243928 CTTAAACCCT
*
7243938 AAACCTTAAACCACCTCCC
1 AAACCCTAAACCACCTCCC
7243957 AAACCCTAAA-C-CCT---
1 AAACCCTAAACCACCTCCC
*
7243971 AAACCTTAAACCACCTCCC
1 AAACCCTAAACCACCTCCC
7243990 AAACCCTAAACCAACCATCCTTC
1 AAACCCTAAACC-ACC-TCC--C
* * *
7244013 AAATCTTAAACCATCTTCCC
1 AAACCCTAAACCA-CCTCCC
* **
7244033 AAACCCTGAACCACCTTTC
1 AAACCCTAAACCACCTCCC
* *
7244052 AAGCTCTAAACCAACC-CCC
1 AAACCCTAAACC-ACCTCCC
7244071 AAACC
1 AAACC
7244076 AGCATGCATT
Statistics
Matches: 89, Mismatches: 19, Indels: 22
0.68 0.15 0.17
Matches are distributed among these distances:
14 9 0.10
15 1 0.01
16 3 0.03
17 3 0.03
18 1 0.01
19 36 0.40
20 17 0.19
21 3 0.03
22 4 0.04
23 12 0.13
ACGTcount: A:0.38, C:0.43, G:0.01, T:0.17
Consensus pattern (19 bp):
AAACCCTAAACCACCTCCC
Found at i:7243972 original size:33 final size:33
Alignment explanation
Indices: 7243930--7244001 Score: 144
Period size: 33 Copynumber: 2.2 Consensus size: 33
7243920 GACATAGCCT
7243930 TAAACCCTAAACCTTAAACCACCTCCCAAACCC
1 TAAACCCTAAACCTTAAACCACCTCCCAAACCC
7243963 TAAACCCTAAACCTTAAACCACCTCCCAAACCC
1 TAAACCCTAAACCTTAAACCACCTCCCAAACCC
7243996 TAAACC
1 TAAACC
7244002 AACCATCCTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.40, C:0.44, G:0.00, T:0.15
Consensus pattern (33 bp):
TAAACCCTAAACCTTAAACCACCTCCCAAACCC
Found at i:7247283 original size:39 final size:38
Alignment explanation
Indices: 7247168--7247288 Score: 136
Period size: 37 Copynumber: 3.2 Consensus size: 38
7247158 AAAAGCTGCC
* * **
7247168 TCTTAGAAAGCTTAAACCTTTTGTGTGTATTCTTGGAT
1 TCTTAGAAAGCTTGAACCTTTAGTAAGTATTCTTGGAT
** * *
7247206 TCTT-GAAAGCTTGAATGTTTGGTAGGTATTCTTGGAT
1 TCTTAGAAAGCTTGAACCTTTAGTAAGTATTCTTGGAT
* *
7247243 TCTTAGAAAGCTTGAGCCTTATAGTAAGTATTATTGGAT
1 TCTTAGAAAGCTTGAACCTT-TAGTAAGTATTCTTGGAT
7247282 TCTTAGA
1 TCTTAGA
7247289 TGTATTCTTG
Statistics
Matches: 69, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
37 31 0.45
38 16 0.23
39 22 0.32
ACGTcount: A:0.26, C:0.11, G:0.21, T:0.42
Consensus pattern (38 bp):
TCTTAGAAAGCTTGAACCTTTAGTAAGTATTCTTGGAT
Found at i:7251482 original size:3 final size:3
Alignment explanation
Indices: 7251474--7251507 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
7251464 TGTTCTTTTC
7251474 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7251508 TCCTTTCATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:7263367 original size:35 final size:35
Alignment explanation
Indices: 7263321--7263388 Score: 120
Period size: 35 Copynumber: 1.9 Consensus size: 35
7263311 ACCATCTTAA
7263321 GCATTATTATCTTTTATAGCCTT-GAAATTATTATT
1 GCATTATTATCTTTTATAG-CTTCGAAATTATTATT
7263356 GCATTATTATCTTTTATAGCTTCGAAATTATTA
1 GCATTATTATCTTTTATAGCTTCGAAATTATTA
7263389 GTGCTATTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 3 0.09
35 29 0.91
ACGTcount: A:0.29, C:0.12, G:0.09, T:0.50
Consensus pattern (35 bp):
GCATTATTATCTTTTATAGCTTCGAAATTATTATT
Found at i:7263922 original size:64 final size:65
Alignment explanation
Indices: 7263800--7263919 Score: 165
Period size: 64 Copynumber: 1.9 Consensus size: 65
7263790 ATTGAATGGT
* * *
7263800 ATTATTGAAGGCATTTTTTTTGCTAAAAATACCTTCAATAATCCATTCAAAAAATTTTGGAGAGT
1 ATTATTGAAAGCA-TTTTTTAGCAAAAAATACCTTCAATAATCCATTCAAAAAATTTTGGAGAGT
7263865 G
65 G
**
7263866 ATTATTGAAAGC-TTTTTTAGCAAAAAATGTCTTCAATAATCCA-T-AAAAAATTTT
1 ATTATTGAAAGCATTTTTTAGCAAAAAATACCTTCAATAATCCATTCAAAAAATTTT
7263920 TTGTATAGAT
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
62 10 0.20
63 1 0.02
64 27 0.55
66 11 0.22
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (65 bp):
ATTATTGAAAGCATTTTTTAGCAAAAAATACCTTCAATAATCCATTCAAAAAATTTTGGAGAGTG
Found at i:7264383 original size:65 final size:63
Alignment explanation
Indices: 7264292--7264610 Score: 297
Period size: 65 Copynumber: 5.0 Consensus size: 63
7264282 ATTTTGGAAG
* * * * * ** *
7264292 GGATTATTAAATGTGTTTTTGTCCAAAAATGCTTTCAATAATCCAAATAAAAAATTTTGTTGAAA
1 GGATTATTGAAGGTATTTTTGACCAAAAATACTTTCAATAATCCTCAT-AAAAA-TTTATTGAAA
* * *
7264357 GGATAATTGAAGGTATTTTTGGCCAAAAATACCTTCAATAATCCTTCATAAAAATTTATTGAGAA
1 GGATTATTGAAGGTATTTTTGACCAAAAATACTTTCAATAATCC-TCATAAAAATTTATTGA-AA
* * * * * * * *
7264422 GG-TTATCGAATGTGTTTTTGATCAAAAATGCTTTTAATAATCCTCTTAACAAA-AT-TTGAAA
1 GGATTATTGAAGGTATTTTTGACCAAAAATACTTTCAATAATCCTCATAA-AAATTTATTGAAA
*
7264483 GGGATTATTGAAGGTATTTTTTG-TCAAAAATACTTTCAATAATCCCTCATAAAAATTTTATT-A
1 -GGATTATTGAAGGTA-TTTTTGACCAAAAATACTTTCAATAAT-CCTCATAAAAA-TTTATTGA
*
7264546 AGT
62 A-A
* *
7264549 GGATTATTGAAGGTGTTTTTGACCAAAAATACCTTCAATAATTCCTCATAAAAATTTATTGA
1 GGATTATTGAAGGTATTTTTGACCAAAAATACTTTCAATAA-TCCTCATAAAAATTTATTGA
7264611 GGGATCAAAA
Statistics
Matches: 208, Mismatches: 32, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
61 2 0.01
62 6 0.03
63 36 0.17
64 67 0.32
65 92 0.44
66 5 0.02
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (63 bp):
GGATTATTGAAGGTATTTTTGACCAAAAATACTTTCAATAATCCTCATAAAAATTTATTGAAA
Found at i:7264393 original size:127 final size:124
Alignment explanation
Indices: 7264255--7264590 Score: 333
Period size: 127 Copynumber: 2.6 Consensus size: 124
7264245 TTCTTTAGCC
* *
7264255 AAAATACCTTCAACAATCCATACAT-AAATTTTGGAAGGGATTATTAAATGTGTTTTTGTCCAAA
1 AAAATACCTTCAATAATCC-T-CATAAAATTTTGGAAGGGATTATTGAATGTGTTTTTGTCCAAA
7264319 AATGCTTTCAATAATCCAAATAA-AAAATTTTGTTGAAA-GGATAATTGAAGGTATTTTTGGCCA
64 AATGCTTTCAATAATCCAAATAACAAAA---T-TTGAAAGGGATAATTGAAGGTATTTTTGGCCA
*
7264382 AAAATACCTTCAATAATCCTTCATAAAAATTTATTGAGAA-GG-TTATCGAATGTGTTTTTGAT-
1 AAAATACCTTCAATAATCC-TCAT-AAAA-TT-TTG-GAAGGGATTATTGAATGTGTTTTTG-TC
* *** * * *
7264444 CAAAAATGCTTTTAATAATCCTCTTAACAAAATTTGAAAGGGATTATTGAAGGTATTTTTTGTCA
60 CAAAAATGCTTTCAATAATCCAAATAACAAAATTTGAAAGGGATAATTGAAGGTATTTTTGGCCA
* ** * *
7264509 AAAATACTTTCAATAATCCCTCATAAAAATTTTATTAAGTGGATTATTGAAGGTGTTTTTGACCA
1 AAAATACCTTCAATAAT-CCTCAT-AAAATTTT-GGAAG-GGATTATTGAATGTGTTTTTGTCCA
* *
7264574 AAAATACCTTCAATAAT
62 AAAATGCTTTCAATAAT
7264591 TCCTCATAAA
Statistics
Matches: 175, Mismatches: 20, Indels: 27
0.79 0.09 0.12
Matches are distributed among these distances:
125 4 0.02
126 11 0.06
127 69 0.39
128 37 0.21
129 41 0.23
130 10 0.06
131 3 0.02
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.37
Consensus pattern (124 bp):
AAAATACCTTCAATAATCCTCATAAAATTTTGGAAGGGATTATTGAATGTGTTTTTGTCCAAAAA
TGCTTTCAATAATCCAAATAACAAAATTTGAAAGGGATAATTGAAGGTATTTTTGGCCA
Found at i:7264605 original size:127 final size:126
Alignment explanation
Indices: 7264292--7264602 Score: 374
Period size: 127 Copynumber: 2.4 Consensus size: 126
7264282 ATTTTGGAAG
* * **
7264292 GGATTATTAAATGTGTTTTTGTCCAAAAATGCTTTCAATAATCCAAATAAAAAATTTTGTTGAAA
1 GGATTATTGAATGTGTTTTTGACCAAAAATGCTTTCAATAATCCTCATAAAAAA---T-TTGAAA
* *
7264357 GGATAATTGAAGGTATTTTTGGCCAAAAATACCTTCAATAATCCTTCATAAAAATTTATTGAGAA
62 GGATAATTGAAGGTATTTTTGGCCAAAAATACCTTCAATAATCCCTCATAAAAATTTATTAAGAA
* * * *
7264422 GG-TTATCGAATGTGTTTTTGATCAAAAATGCTTTTAATAATCCTCTTAACAAAATTTGAAAGGG
1 GGATTATTGAATGTGTTTTTGACCAAAAATGCTTTCAATAATCCTCATAA-AAAATTTGAAA-GG
* * * * *
7264486 ATTATTGAAGGTATTTTTTGTCAAAAATACTTTCAATAATCCCTCATAAAAATTTTATTAAG-T
64 ATAATTGAAGGTATTTTTGGCCAAAAATACCTTCAATAATCCCTCATAAAAA-TTTATTAAGAA
* * *
7264549 GGATTATTGAAGGTGTTTTTGACCAAAAATACCTTCAATAATTCCTCATAAAAA
1 GGATTATTGAATGTGTTTTTGACCAAAAATGCTTTCAATAA-TCCTCATAAAAA
7264603 TTTATTGAGG
Statistics
Matches: 154, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
126 6 0.04
127 52 0.34
128 43 0.28
129 47 0.31
130 6 0.04
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (126 bp):
GGATTATTGAATGTGTTTTTGACCAAAAATGCTTTCAATAATCCTCATAAAAAATTTGAAAGGAT
AATTGAAGGTATTTTTGGCCAAAAATACCTTCAATAATCCCTCATAAAAATTTATTAAGAA
Found at i:7264752 original size:63 final size:63
Alignment explanation
Indices: 7264663--7264958 Score: 287
Period size: 63 Copynumber: 4.6 Consensus size: 63
7264653 TGAGATGATA
* * * * *
7264663 ATTGAAGACATTTTTAACCAGAAATACCTTCAATAATCCTTCATAAAAATTTATTGAGGGGTT
1 ATTGAAGGCATTTTTGACCAAAAATACCTTCAATAATCCTTCATAAAAATTTATTAAGGGATT
* * *
7264726 ATTGAATGCATTTTTGACCAAAAATACCTTTAATAATCCTT-TTAACAAAATTTGA--AAGGGAT
1 ATTGAAGGCATTTTTGACCAAAAATACCTTCAATAATCCTTCAT-A-AAAATTT-ATTAAGGGAT
7264788 T
63 T
*
7264789 ATTGAAGGCATTTTTTG-CCAAAAATACCTTCAATAAT-CTCTCATAAAAATTTTATTAAATGGA
1 ATTGAAGGCA-TTTTTGACCAAAAATACCTTCAATAATCCT-TCATAAAAA-TTTATT-AAGGGA
7264852 TT
62 TT
* * ** * *
7264854 ATTAAAGGTATTTTTGGTCAAAAATACCTTCAATAATTCTTCATAAAAATTTATTGAGGGGATT
1 ATTGAAGGCATTTTTGACCAAAAATACCTTCAATAATCCTTCATAAAAATTTATT-AAGGGATT
* * * ** *
7264918 ATTGAAAAGCGTTTTTGACCAGAAACGCCTTTAATAATCCT
1 ATTG-AAGGCATTTTTGACCAAAAATACCTTCAATAATCCT
7264959 ATTCAATATT
Statistics
Matches: 191, Mismatches: 29, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
62 8 0.04
63 76 0.40
64 35 0.18
65 70 0.37
66 2 0.01
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (63 bp):
ATTGAAGGCATTTTTGACCAAAAATACCTTCAATAATCCTTCATAAAAATTTATTAAGGGATT
Found at i:7264878 original size:300 final size:301
Alignment explanation
Indices: 7264315--7264913 Score: 948
Period size: 300 Copynumber: 2.0 Consensus size: 301
7264305 TGTTTTTGTC
* * ** **
7264315 CAAAAATGCTTTCAATAATCCAAATAAAAAATTTTGTTGAAAGGATAATTGAAGGTATTTTTGGC
1 CAAAAACGCTTTCAATAATCCAAACAAAAAATTTTGTTGAAAGGATAATTGAAGACATTTTTAAC
** *
7264380 CAAAAATACCTTCAATAATCCTTCATAAAAATTTATTGAGAAGGTTATCGAATGTGTTTTTGATC
66 CAAAAATACCTTCAATAATCCTTCATAAAAATTTATTGAGAAGGTTATCGAATGCATTTTTGACC
* * * *
7264445 AAAAATGCTTTTAATAATCCTCTTAACAAAATTTGAAAGGGATTATTGAAGGTATTTTTTGTCAA
131 AAAAATACCTTTAATAATCCTCTTAACAAAATTTGAAAGGGATTATTGAAGGCATTTTTTGCCAA
* * * *
7264510 AAATACTTTCAATAATCCCTCATAAAAATTTTATTAAGTGGATTATTGAAGGTGTTTTTGACCAA
196 AAATACCTTCAATAATCCCTCATAAAAATTTTATTAAATGGATTATTAAAGGTATTTTTGACCAA
7264575 AAATACCTTCAATAATTCCTCATAAAAATTTATTGAGGGAT
261 AAATACCTTCAATAATTCCTCATAAAAATTTATTGAGGGAT
* *
7264616 CAAAAACGCTTTCAATAATCCAAACAAAAAATTTTGTTGAGATGATAATTGAAGACATTTTTAAC
1 CAAAAACGCTTTCAATAATCCAAACAAAAAATTTTGTTGAAAGGATAATTGAAGACATTTTTAAC
* * *
7264681 CAGAAATACCTTCAATAATCCTTCATAAAAATTTATTGAG-GGGTTATTGAATGCATTTTTGACC
66 CAAAAATACCTTCAATAATCCTTCATAAAAATTTATTGAGAAGGTTATCGAATGCATTTTTGACC
*
7264745 AAAAATACCTTTAATAATCCTTTTAACAAAATTTGAAAGGGATTATTGAAGGCATTTTTTGCCAA
131 AAAAATACCTTTAATAATCCTCTTAACAAAATTTGAAAGGGATTATTGAAGGCATTTTTTGCCAA
* **
7264810 AAATACCTTCAATAATCTCTCATAAAAATTTTATTAAATGGATTATTAAAGGTATTTTTGGTCAA
196 AAATACCTTCAATAATCCCTCATAAAAATTTTATTAAATGGATTATTAAAGGTATTTTTGACCAA
*
7264875 AAATACCTTCAATAATTCTTCATAAAAATTTATTGAGGG
261 AAATACCTTCAATAATTCCTCATAAAAATTTATTGAGGG
7264914 GATTATTGAA
Statistics
Matches: 271, Mismatches: 27, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
300 175 0.65
301 96 0.35
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (301 bp):
CAAAAACGCTTTCAATAATCCAAACAAAAAATTTTGTTGAAAGGATAATTGAAGACATTTTTAAC
CAAAAATACCTTCAATAATCCTTCATAAAAATTTATTGAGAAGGTTATCGAATGCATTTTTGACC
AAAAATACCTTTAATAATCCTCTTAACAAAATTTGAAAGGGATTATTGAAGGCATTTTTTGCCAA
AAATACCTTCAATAATCCCTCATAAAAATTTTATTAAATGGATTATTAAAGGTATTTTTGACCAA
AAATACCTTCAATAATTCCTCATAAAAATTTATTGAGGGAT
Found at i:7265528 original size:63 final size:63
Alignment explanation
Indices: 7265427--7265579 Score: 177
Period size: 63 Copynumber: 2.4 Consensus size: 63
7265417 TAATCCATGA
* ** **
7265427 ATTATTCAAGGCA-TTTTTAGCCATAAATGCCTTCAATAA-CCCTATT-TAATATTTTGTAAGGG
1 ATTATTCAAGGCATTTTTTAGCCAAAAATGCCTTCAATAATCCC-ATTATAA-AAATTAAAAGGG
* * *
7265489 ATTATTCAAGGTATTTTTTAGCTAAAAATGCCTTTAATAATCCCATTATAAAAATTAAAAGGG
1 ATTATTCAAGGCATTTTTTAGCCAAAAATGCCTTCAATAATCCCATTATAAAAATTAAAAGGG
* *
7265552 ATTATTCAAGGCATTTTCTAGGCAAAAA
1 ATTATTCAAGGCATTTTTTAGCCAAAAA
7265580 CATCTTAAAT
Statistics
Matches: 76, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
62 12 0.16
63 58 0.76
64 6 0.08
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (63 bp):
ATTATTCAAGGCATTTTTTAGCCAAAAATGCCTTCAATAATCCCATTATAAAAATTAAAAGGG
Found at i:7265554 original size:274 final size:281
Alignment explanation
Indices: 7265064--7265822 Score: 833
Period size: 274 Copynumber: 2.7 Consensus size: 281
7265054 GTTTTTGATA
* * *
7265064 AAAAAATGCCTTCAATAATCCCCTTTGAATGAATAATTTATGGGTTACAGAAA-GTATTTTTAGC
1 AAAAAATGCCTTTAATAAT-CCCTTTGAATGAATAATTTATGGGTTATAGAAAGGT-TTTTTGGC
* * * **
7265128 CAAAAATACCTTGAATAATCCATCAATTATTGAAGGCATTTTTAGTCAGAAATATCTTCAATAA-
64 CAAAAATACCTTGAATAATCCATGAATTATTCAAGGCATTTTTAGTCAAAAATGCCTTCAATAAC
* * * * ** *
7265192 CCTCATTTAATATTTTGTAAAGAATTATTGAATGTGTTTTCTAGCTAAAAACACCTTCAATAATC
129 CCT-ATTTAATATTTTGTAAGGGATTATTCAAGGTGTTTTCTAGCTAAAAATGCCTTAAATAATC
* ** ** *
7265257 CCATCATAAAAATTGAAAGGGATTATTCAAGGTGTTTTAT-GGGTAAAACACCTTGAATATT-AA
193 CCATCATAAAAATTAAAAGGGATTATTCAAGGCATTTTATAGGCAAAAACACCTTAAATATTCAA
*
7265320 AA-AAAAA-AATGTTG-GG-A-TT
258 AAGAAAAAGAATATTGAGGCATTT
* * *
7265339 -AAAAATGCCTTTAATAATCTCTTCTGAATAAATACTTTATGGGTTATA-AAAGGTTTTTTTGGC
1 AAAAAATGCCTTTAATAATCCCTT-TGAATGAATAATTTATGGGTTATAGAAAGG-TTTTTTGGC
* *
7265402 CAAAAATACCTTGAATAATCCATGAATTATTCAAGGCATTTTTAGCCATAAATGCCTTCAATAAC
64 CAAAAATACCTTGAATAATCCATGAATTATTCAAGGCATTTTTAGTCAAAAATGCCTTCAATAAC
* * *
7265467 CCTATTTAATATTTTGTAAGGGATTATTCAAGGTATTTTTTAGCTAAAAATGCCTTTAATAATCC
129 CCTATTTAATATTTTGTAAGGGATTATTCAAGGTGTTTTCTAGCTAAAAATGCCTTAAATAATCC
* * *
7265532 CATTATAAAAATTAAAAGGGATTATTCAAGGCATTTTCTAGGCAAAAACATCTTAAATATTCCAA
194 CATCATAAAAATTAAAAGGGATTATTCAAGGCATTTTATAGGCAAAAACACCTTAAATATT-CAA
*
7265597 AAGAAAAACGTTGGGATTATTGAAGGCATTTTT
258 AAGAAAAA------GAATATTG-AGGCA--TTT
** *
7265630 AGCAGAAAATATCTTTAATAATCCCTTATGAATGAATAATTTGTGGGTTATAGAAAGCG-TTTTT
1 A--A-AAAATGCCTTTAATAATCCCTT-TGAATGAATAATTTATGGGTTATAGAAAG-GTTTTTT
* * * * * * *
7265694 GGTCAAAAATACATTGAATAATCTATGAATTATTTAAGGCATTTTTAGTCAAAAACGCATTCAAA
61 GGCCAAAAATACCTTGAATAATCCATGAATTATTCAAGGCATTTTTAGTCAAAAATGCCTTCAAT
*
7265759 AACCCCATTTAATATTTTGTAAGGGATTATTCAAGGTGTTTTCTAGGC-AAAAATGCCTTAAATA
126 AACCCTATTTAATATTTTGTAAGGGATTATTCAAGGTGTTTTCTA-GCTAAAAATGCCTTAAATA
7265823 TTCCAAAAAC
Statistics
Matches: 404, Mismatches: 52, Indels: 36
0.82 0.11 0.07
Matches are distributed among these distances:
273 7 0.02
274 191 0.47
275 21 0.05
277 4 0.01
278 5 0.01
285 5 0.01
287 2 0.00
288 1 0.00
291 2 0.00
294 1 0.00
295 158 0.39
296 6 0.01
297 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.14, T:0.35
Consensus pattern (281 bp):
AAAAAATGCCTTTAATAATCCCTTTGAATGAATAATTTATGGGTTATAGAAAGGTTTTTTGGCCA
AAAATACCTTGAATAATCCATGAATTATTCAAGGCATTTTTAGTCAAAAATGCCTTCAATAACCC
TATTTAATATTTTGTAAGGGATTATTCAAGGTGTTTTCTAGCTAAAAATGCCTTAAATAATCCCA
TCATAAAAATTAAAAGGGATTATTCAAGGCATTTTATAGGCAAAAACACCTTAAATATTCAAAAG
AAAAAGAATATTGAGGCATTT
Found at i:7265946 original size:230 final size:232
Alignment explanation
Indices: 7265547--7266052 Score: 639
Period size: 230 Copynumber: 2.2 Consensus size: 232
7265537 TAAAAATTAA
**
7265547 AAGGGATTATTCAAGGCATTTTCTAGGCAAAAACATCTTAAATATTCCAAAAGAAAAACGTTGGG
1 AAGGGATTATTCAAGGCATTTTCTAGGCAAAAACGCCTTAAATATTCCAAAAGAAAAACGTTGGG
* * * * *
7265612 ATTATTGAAGGCATTTTTAGCAGAAAATATCTTTAATAATCCCTTATGAATGAATAATTTGTGGG
66 ATTATTGAAGGCATTTTTAGCAGAAAAGAACTTCAATAATCCCTAATGAATGAATAATTCGTGGG
* * **
7265677 TTATAGAAAGCGTTTTTGGTCAAAAATACATTGAATAATCTATGAATTATTTAAGGCATTTTTAG
131 TTATAGAAAGCATTTTTGGTCAAAAATACATTCAATAATCTATGAATTATTTAAAACATTTTTAG
* *
7265742 -TCAAAAACGCATTCAAAAACCCCATTTAATATTTTGT
196 CT-AAAAACACATTCAAAAACCCCATTCAATATTTTGT
** * * *
7265779 AAGGGATTATTCAAGGTGTTTTCTAGGCAAAAATGCCTTAAATATTCC-AAA-AACAATGTTGGG
1 AAGGGATTATTCAAGGCATTTTCTAGGCAAAAACGCCTTAAATATTCCAAAAGAAAAACGTTGGG
* * * *
7265842 ATTATTTAAGGC-TTTTTTGATAGAAAAGAACTTCAATAATCTCC-AATTAATGAATAATTCGTG
66 ATTATTGAAGGCATTTTTAG-CAGAAAAGAACTTCAATAATC-CCTAATGAATGAATAATTCGTG
* * * * *
7265905 GGTTATATAAGGTATTTTTGG-CAAAAAATGCATTCAATAATCTATGTATTATTTAAAACATTTT
129 GGTTATAGAAAGCATTTTTGGTC-AAAAATACATTCAATAATCTATGAATTATTTAAAACATTTT
* *
7265969 TAGCTAGAAACACCTTCAAAAACCCCATTCAATATTTTGT
193 TAGCTAAAAACACATTCAAAAACCCCATTCAATATTTTGT
* *
7266009 AATGGATTATTCAAGGCATTTTCT-GGCTAAAAACGCCTTCAATA
1 AAGGGATTATTCAAGGCATTTTCTAGGC-AAAAACGCCTTAAATA
7266053 ATCCCATTCA
Statistics
Matches: 235, Mismatches: 34, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
229 10 0.04
230 176 0.75
231 6 0.03
232 43 0.18
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.35
Consensus pattern (232 bp):
AAGGGATTATTCAAGGCATTTTCTAGGCAAAAACGCCTTAAATATTCCAAAAGAAAAACGTTGGG
ATTATTGAAGGCATTTTTAGCAGAAAAGAACTTCAATAATCCCTAATGAATGAATAATTCGTGGG
TTATAGAAAGCATTTTTGGTCAAAAATACATTCAATAATCTATGAATTATTTAAAACATTTTTAG
CTAAAAACACATTCAAAAACCCCATTCAATATTTTGT
Found at i:7266059 original size:63 final size:63
Alignment explanation
Indices: 7265963--7266117 Score: 181
Period size: 63 Copynumber: 2.5 Consensus size: 63
7265953 TTATTTAAAA
* * * * * *
7265963 CATTTTTAGCTAGAAACACCTTCAAAAACCCCATTCAATATTTTGT-A-ATGGATTATTCAAGG
1 CATTTTTGGCTAAAAACGCCTTCAATAATCCCATTCAATACTTTGTGAGA-GGATTATTCAAGG
*
7266025 CATTTTCTGGCTAAAAACGCCTTCAATAATCCCATTCAATACTTTGTGAGAGGATTATTGAAGG
1 CATTTT-TGGCTAAAAACGCCTTCAATAATCCCATTCAATACTTTGTGAGAGGATTATTCAAGG
* *
7266089 CATTTTTGG-TCAACAATGCCTTCAATAAT
1 CATTTTTGGCT-AAAAACGCCTTCAATAAT
7266118 TCACTCATAA
Statistics
Matches: 80, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
62 7 0.09
63 53 0.66
64 19 0.24
65 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (63 bp):
CATTTTTGGCTAAAAACGCCTTCAATAATCCCATTCAATACTTTGTGAGAGGATTATTCAAGG
Found at i:7283190 original size:18 final size:18
Alignment explanation
Indices: 7283167--7283231 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 18
7283157 AACAAACATT
7283167 TTTTTAATTTTTAATACA
1 TTTTTAATTTTTAATACA
* *
7283185 TTTTTAATTTGT-ATGAACT
1 TTTTTAATTTTTAAT--ACA
*
7283204 TTTTTAATTTTTAATATA
1 TTTTTAATTTTTAATACA
*
7283222 CTTTTAATTT
1 TTTTTAATTT
7283232 ATGTTAACTC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
17 2 0.05
18 21 0.55
19 13 0.34
20 2 0.05
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (18 bp):
TTTTTAATTTTTAATACA
Found at i:7294387 original size:28 final size:28
Alignment explanation
Indices: 7294356--7294410 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
7294346 ACTCAAATAT
7294356 TTAT-AAAAATTGAAAAAATTAAAAAAAA
1 TTATGAAAAATT-AAAAAATTAAAAAAAA
* * *
7294384 TTATGAAAACTTAAAAGATTCAAAAAA
1 TTATGAAAAATTAAAAAATTAAAAAAA
7294411 TTCAAAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 17 0.74
29 6 0.26
ACGTcount: A:0.65, C:0.04, G:0.05, T:0.25
Consensus pattern (28 bp):
TTATGAAAAATTAAAAAATTAAAAAAAA
Found at i:7294486 original size:17 final size:16
Alignment explanation
Indices: 7294448--7294478 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7294438 TGAAAAATTC
7294448 ATAAAAAGAAATTTTA
1 ATAAAAAGAAATTTTA
7294464 ATAAAAAGAAATTTT
1 ATAAAAAGAAATTTT
7294479 TCTTAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.32
Consensus pattern (16 bp):
ATAAAAAGAAATTTTA
Found at i:7294565 original size:19 final size:20
Alignment explanation
Indices: 7294522--7294565 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
7294512 AATTGCAAAT
* *
7294522 AAAAAATCTAAAATATTTTG
1 AAAAAATCCAAAATATTTTA
*
7294542 GAAAAATCCAAAA-ATTTTA
1 AAAAAATCCAAAATATTTTA
7294561 AAAAA
1 AAAAA
7294566 TTTTAAATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.61, C:0.07, G:0.05, T:0.27
Consensus pattern (20 bp):
AAAAAATCCAAAATATTTTA
Found at i:7294903 original size:17 final size:17
Alignment explanation
Indices: 7294878--7294919 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
7294868 TGAATTTTAA
7294878 GAAA-ATTTTATTTTATT
1 GAAATATTTTATTTT-TT
*
7294895 GAAATTTTTTATTTTTT
1 GAAATATTTTATTTTTT
7294912 GAAA-ATTT
1 GAAATATTT
7294920 CAAAATCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 3 0.14
17 10 0.45
18 9 0.41
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (17 bp):
GAAATATTTTATTTTTT
Found at i:7294985 original size:9 final size:9
Alignment explanation
Indices: 7294973--7295033 Score: 54
Period size: 9 Copynumber: 6.7 Consensus size: 9
7294963 ATATTTTAAG
7294973 TTTTTATAA
1 TTTTTATAA
*
7294982 TTTTTTTAA
1 TTTTTATAA
7294991 TTTTTATAA
1 TTTTTATAA
*
7295000 TCTCTTGA-AA
1 T-T-TTTATAA
*
7295010 TATTTTAT-T
1 T-TTTTATAA
7295019 TTTTTATAA
1 TTTTTATAA
7295028 TTTTTA
1 TTTTTA
7295034 GAATATTTCA
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
8 6 0.15
9 27 0.66
10 5 0.12
11 3 0.07
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.67
Consensus pattern (9 bp):
TTTTTATAA
Found at i:7295066 original size:10 final size:10
Alignment explanation
Indices: 7295048--7295082 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
7295038 ATTTCAGATA
7295048 TTTTGAAAAT
1 TTTTGAAAAT
*
7295058 TTTTTAAAAT
1 TTTTGAAAAT
7295068 TTTTGAGAAAT
1 TTTTGA-AAAT
7295079 TTTT
1 TTTT
7295083 TTTAGATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 14 0.64
11 8 0.36
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (10 bp):
TTTTGAAAAT
Found at i:7298090 original size:9 final size:9
Alignment explanation
Indices: 7298073--7298139 Score: 68
Period size: 9 Copynumber: 7.3 Consensus size: 9
7298063 GTTATAAAGT
*
7298073 TAACCTCCA
1 TAACATCCA
7298082 TAACATCCA
1 TAACATCCA
7298091 TAA-ATAGCCA
1 TAACAT--CCA
7298101 TAACATCCA
1 TAACATCCA
7298110 TAA-ATAGCCA
1 TAACAT--CCA
7298120 TAACATCCA
1 TAACATCCA
7298129 -AACATCCA
1 TAACATCCA
7298137 TAA
1 TAA
7298140 AGTACATCAT
Statistics
Matches: 50, Mismatches: 1, Indels: 14
0.77 0.02 0.22
Matches are distributed among these distances:
8 12 0.24
9 22 0.44
10 12 0.24
11 4 0.08
ACGTcount: A:0.46, C:0.30, G:0.03, T:0.21
Consensus pattern (9 bp):
TAACATCCA
Found at i:7298103 original size:19 final size:19
Alignment explanation
Indices: 7298079--7298128 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
7298069 AAGTTAACCT
7298079 CCATAACATCCATAAATAG
1 CCATAACATCCATAAATAG
7298098 CCATAACATCCATAAATAG
1 CCATAACATCCATAAATAG
7298117 CCATAACATCCA
1 CCATAACATCCA
7298129 AACATCCATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.46, C:0.30, G:0.04, T:0.20
Consensus pattern (19 bp):
CCATAACATCCATAAATAG
Found at i:7300654 original size:28 final size:27
Alignment explanation
Indices: 7300606--7300662 Score: 69
Period size: 28 Copynumber: 2.1 Consensus size: 27
7300596 AAAATATATA
*
7300606 AAAATAAGCACATAAAATATTATAATT
1 AAAATAAGCAAATAAAATATTATAATT
* * *
7300633 AAAATAAGCTAAATCAAGTATTATATTT
1 AAAATAAGC-AAATAAAATATTATAATT
7300661 AA
1 AA
7300663 CATTACATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 9 0.36
28 16 0.64
ACGTcount: A:0.56, C:0.07, G:0.05, T:0.32
Consensus pattern (27 bp):
AAAATAAGCAAATAAAATATTATAATT
Found at i:7300769 original size:3 final size:3
Alignment explanation
Indices: 7300761--7300801 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
7300751 CTCATGTGTT
7300761 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
7300802 TTCTTCTTCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:7301012 original size:26 final size:26
Alignment explanation
Indices: 7300980--7301069 Score: 92
Period size: 26 Copynumber: 3.5 Consensus size: 26
7300970 ACTATAGACA
* *
7300980 CCCATTTTGGTCCGAGCCTAATTGGG
1 CCCATTTTGGTCCGAGCCTAACTAGG
* *
7301006 CTCATTTTGGTCCAAGCCTAACTAGG
1 CCCATTTTGGTCCGAGCCTAACTAGG
* * **
7301032 CCCATTCTGGT-CGAGCCAAACTATA
1 CCCATTTTGGTCCGAGCCTAACTAGG
7301057 CGCCATTTTGGTC
1 C-CCATTTTGGTC
7301070 AAACCCATTA
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
25 11 0.22
26 40 0.78
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.30
Consensus pattern (26 bp):
CCCATTTTGGTCCGAGCCTAACTAGG
Found at i:7301115 original size:3 final size:3
Alignment explanation
Indices: 7301107--7301159 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
7301097 TTAGTTACTT
7301107 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7301155 TTA TT
1 TTA TT
7301160 TTCCTTTTCT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7301647 original size:19 final size:19
Alignment explanation
Indices: 7301612--7301648 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7301602 TAGGTTTGGT
*
7301612 TGAATTTTTTGACGAAGTA
1 TGAATTTTTCGACGAAGTA
*
7301631 TGAATTTTTCGATGAAGT
1 TGAATTTTTCGACGAAGT
7301649 TTTCGGCAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.05, G:0.22, T:0.43
Consensus pattern (19 bp):
TGAATTTTTCGACGAAGTA
Found at i:7302003 original size:6 final size:5
Alignment explanation
Indices: 7301988--7302066 Score: 56
Period size: 5 Copynumber: 15.6 Consensus size: 5
7301978 TTCCTTTTCC
* ****
7301988 ATTTT ATTTT A-TTT -TTTG ATTTT A-TTT ATTTT ATTTT ATTTCT AACCC
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTT-T ATTTT
7302036 ATTTTT CATTTTT ATTTT ATTTT ATTTT ATT
1 A-TTTT -A-TTTT ATTTT ATTTT ATTTT ATT
7302067 ATTTTTTGGT
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
4 9 0.16
5 40 0.69
6 3 0.05
7 6 0.10
ACGTcount: A:0.20, C:0.06, G:0.01, T:0.72
Consensus pattern (5 bp):
ATTTT
Found at i:7302073 original size:15 final size:15
Alignment explanation
Indices: 7301988--7302066 Score: 56
Period size: 13 Copynumber: 5.2 Consensus size: 15
7301978 TTCCTTTTCC
7301988 ATTTTATTTTA-TTT
1 ATTTTATTTTATTTT
*
7302002 -TTTGATTTTA-TTT
1 ATTTTATTTTATTTT
7302015 ATTTTATTTTATTTCT
1 ATTTTATTTTATTT-T
****
7302031 AACCCATTTTTCATTTTT
1 ATTTTA-TTTT-A-TTTT
7302049 ATTTTATTTTATTTT
1 ATTTTATTTTATTTT
7302064 ATT
1 ATT
7302067 ATTTTTTGGT
Statistics
Matches: 49, Mismatches: 10, Indels: 11
0.70 0.14 0.16
Matches are distributed among these distances:
13 12 0.24
14 9 0.18
15 9 0.18
16 4 0.08
17 8 0.16
18 4 0.08
19 3 0.06
ACGTcount: A:0.20, C:0.06, G:0.01, T:0.72
Consensus pattern (15 bp):
ATTTTATTTTATTTT
Found at i:7309132 original size:17 final size:17
Alignment explanation
Indices: 7309087--7309137 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
7309077 AGACTATACA
* *
7309087 AATAAAAATGAATCAAT
1 AATAAAAATAAATAAAT
7309104 AATAAAAAATAAATAAAT
1 AAT-AAAAATAAATAAAT
*
7309122 AATAGAAATAACATAA
1 AATAAAAATAA-ATAA
7309138 CAACTATATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 10 0.34
18 19 0.66
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.22
Consensus pattern (17 bp):
AATAAAAATAAATAAAT
Found at i:7310929 original size:19 final size:18
Alignment explanation
Indices: 7310906--7310948 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
7310896 TTTGCTTATA
7310906 ATTTAGGATCTCACCTAGG
1 ATTTAGG-TCTCACCTAGG
* *
7310925 GTTTAAGGTTTCACCTAGG
1 ATTT-AGGTCTCACCTAGG
7310944 ATTTA
1 ATTTA
7310949 AGGTTTTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
18 1 0.05
19 16 0.80
20 3 0.15
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (18 bp):
ATTTAGGTCTCACCTAGG
Found at i:7310949 original size:19 final size:19
Alignment explanation
Indices: 7310916--7310954 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
7310906 ATTTAGGATC
*
7310916 TCACCTAGGGTTTAAGGTT
1 TCACCTAGGATTTAAGGTT
7310935 TCACCTAGGATTTAAGGTT
1 TCACCTAGGATTTAAGGTT
7310954 T
1 T
7310955 TATTTTACAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38
Consensus pattern (19 bp):
TCACCTAGGATTTAAGGTT
Found at i:7311130 original size:16 final size:16
Alignment explanation
Indices: 7311109--7311144 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7311099 TTACTAAAAT
*
7311109 TTTATTATATTTATTA
1 TTTATTATATTTAATA
*
7311125 TTTATTATTTTTAATA
1 TTTATTATATTTAATA
7311141 TTTA
1 TTTA
7311145 ATAATTCCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTATTATATTTAATA
Found at i:7311255 original size:16 final size:16
Alignment explanation
Indices: 7311231--7311265 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7311221 TCTTATGGTT
* *
7311231 TTTATTTTATTTTTTA
1 TTTACTTTATTTATTA
7311247 TTTACTTTATTTATTA
1 TTTACTTTATTTATTA
7311263 TTT
1 TTT
7311266 TTTAAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTACTTTATTTATTA
Found at i:7312993 original size:22 final size:21
Alignment explanation
Indices: 7312968--7313008 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7312958 TTTTTGCCTG
*
7312968 CTGCCAGTTTCTGTTTGTTTTT
1 CTGCCA-TTTCTCTTTGTTTTT
*
7312990 CTGCCATTTTTCTTTGTTT
1 CTGCCATTTCTCTTTGTTT
7313009 GGGCCGCTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.05, C:0.20, G:0.15, T:0.61
Consensus pattern (21 bp):
CTGCCATTTCTCTTTGTTTTT
Found at i:7318996 original size:3 final size:3
Alignment explanation
Indices: 7318990--7319023 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
7318980 TAAATAATTA
7318990 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATAT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT
7319024 TTTTATGGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:7321168 original size:5 final size:5
Alignment explanation
Indices: 7321158--7321207 Score: 54
Period size: 5 Copynumber: 10.6 Consensus size: 5
7321148 AATGGGTTAG
*
7321158 AAATA AAATA AAATA AAAT- CAA-A AAATA AAATA AAATA GAAA-A AAA-A
1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA -AAATA AAATA
7321205 AAA
1 AAA
7321208 AACCTACGAT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
4 11 0.28
5 26 0.65
6 3 0.08
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.14
Consensus pattern (5 bp):
AAATA
Found at i:7321185 original size:13 final size:12
Alignment explanation
Indices: 7321158--7321206 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 12
7321148 AATGGGTTAG
7321158 AAATAAAAT--A
1 AAATAAAATAAA
7321168 AAATAAAATCAAA
1 AAATAAAAT-AAA
7321181 AAATAAAATAAA
1 AAATAAAATAAA
* *
7321193 ATAGAAAA-AAA
1 AAATAAAATAAA
7321204 AAA
1 AAA
7321207 AAACCTACGA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
10 9 0.27
11 5 0.15
12 9 0.27
13 10 0.30
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.14
Consensus pattern (12 bp):
AAATAAAATAAA
Found at i:7321204 original size:23 final size:23
Alignment explanation
Indices: 7321158--7321207 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
7321148 AATGGGTTAG
*
7321158 AAATAAAATAAAATAAAATCAAA
1 AAATAAAATAAAATAAAATAAAA
*
7321181 AAATAAAATAAAATAGAAAAAAAA
1 AAATAAAATAAAATA-AAATAAAA
7321205 AAA
1 AAA
7321208 AACCTACGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.14
Consensus pattern (23 bp):
AAATAAAATAAAATAAAATAAAA
Found at i:7322051 original size:20 final size:20
Alignment explanation
Indices: 7322026--7322063 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7322016 AAAAAAGGAA
* *
7322026 AATAAAATAATAATAATAAT
1 AATAAAAAAATAAAAATAAT
7322046 AATAAAAAAATAAAAATA
1 AATAAAAAAATAAAAATA
7322064 TCTAATTGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (20 bp):
AATAAAAAAATAAAAATAAT
Found at i:7322624 original size:119 final size:119
Alignment explanation
Indices: 7322365--7322867 Score: 429
Period size: 116 Copynumber: 4.3 Consensus size: 119
7322355 ATAAATGATC
* * * * *
7322365 TAAGAAATAATCTGGATTGAGCCAAGATCAAGTGACTGGGATGAAACCATGAA-TCGAAATAAAA
1 TAAGAAATGATCTGGATTGAGCCAAGATCAAGTGACCGGGACGAAACCATCAAGTC-AAATAAAG
* *
7322429 TGATCAAGACCAAGTCAAGGTCAAAAATAAATGATCGAGGCA-G-AACCATGAATCA
65 TGACCAAGACCAAGTCAAGGTCAAAAATAAATGATC-AGG-ATGAAACCACGAATCA
* * * * *
7322484 -ATAGAGATAATATGGACTGAGCCAAGATCAAGTGACCGGGACGAAACCA-CAAGCCAAAATAAA
1 TA-AGAAATGATCTGGATTGAGCCAAGATCAAGTGACCGGGACGAAACCATCAAGTC-AAATAAA
* * * * * *
7322547 GTGACC-AGAACTAACTCGAGGTCCAAAATAAATGATCAGGATGAAACTATGAATCA
64 GTGACCAAG-ACCAAGTCAAGGTCAAAAATAAATGATCAGGATGAAACCACGAATCA
* * * * * * * *
7322603 TAAGAAATGATCTAGATTGAGCCAAGATTATGCGATC-GGATGAAACCATC--GTCAAATAAGGC
1 TAAGAAATGATCTGGATTGAGCCAAGATCAAGTGACCGGGACGAAACCATCAAGTCAAATAAAGT
* * * * * * *
7322665 GATCAAGTCCGAGTCGAGGTCGAAAATAAATGATCGGGATAAAACCACGAATCA
66 GACCAAGACCAAGTCAAGGTCAAAAATAAATGATCAGGATGAAACCACGAATCA
* * * ** * *
7322719 TAAAAAATGATCTAGATTGA-CCAAG-TCAAGTGATCGAAACGAAACCA-CGAGTCAAAT-GAGA
1 TAAGAAATGATCTGGATTGAGCCAAGATCAAGTGACCGGGACGAAACCATCAAGTCAAATAAAG-
* * *
7322780 TGACTAGGACCAAGTCAAGGTCAAAAATAAATGATCAAGATGAAACCACGAATCA
65 TGACCAAGACCAAGTCAAGGTCAAAAATAAATGATCAGGATGAAACCACGAATCA
* * * *
7322835 TAAAAAATGATTTGGACTGAGCCAATATCAAGT
1 TAAGAAATGATCTGGATTGAGCCAAGATCAAGT
7322868 AGGCAAATAA
Statistics
Matches: 308, Mismatches: 62, Indels: 29
0.77 0.16 0.07
Matches are distributed among these distances:
114 8 0.03
115 14 0.05
116 135 0.44
117 9 0.03
118 25 0.08
119 116 0.38
120 1 0.00
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.18
Consensus pattern (119 bp):
TAAGAAATGATCTGGATTGAGCCAAGATCAAGTGACCGGGACGAAACCATCAAGTCAAATAAAGT
GACCAAGACCAAGTCAAGGTCAAAAATAAATGATCAGGATGAAACCACGAATCA
Found at i:7323418 original size:13 final size:13
Alignment explanation
Indices: 7323393--7323433 Score: 73
Period size: 13 Copynumber: 3.1 Consensus size: 13
7323383 AAAAAGAAGG
7323393 CTATTTAGGAGTAA
1 CTATTT-GGAGTAA
7323407 CTATTTGGAGTAA
1 CTATTTGGAGTAA
7323420 CTATTTGGAGTAA
1 CTATTTGGAGTAA
7323433 C
1 C
7323434 AATGCCCCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 21 0.78
14 6 0.22
ACGTcount: A:0.32, C:0.10, G:0.22, T:0.37
Consensus pattern (13 bp):
CTATTTGGAGTAA
Found at i:7327942 original size:74 final size:74
Alignment explanation
Indices: 7327819--7327967 Score: 280
Period size: 74 Copynumber: 2.0 Consensus size: 74
7327809 GTTCAAAGGA
* *
7327819 TCTGTATGAGCACTCCAATGATTCTTCTACTACTTCTACATATGGGGCATTTAACTTTAAACCTA
1 TCTGTATGAGCACTCCAATGATTCTTCTACTACTTCTACATATGAGGCATTTAACTTCAAACCTA
7327884 AACTTGCAT
66 AACTTGCAT
7327893 TCTGTATGAGCACTCCAATGATTCTTCTACTACTTCTACATATGAGGCATTTAACTTCAAACCTA
1 TCTGTATGAGCACTCCAATGATTCTTCTACTACTTCTACATATGAGGCATTTAACTTCAAACCTA
7327958 AACTTGCAT
66 AACTTGCAT
7327967 T
1 T
7327968 AAATCCTTTT
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 73 1.00
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.36
Consensus pattern (74 bp):
TCTGTATGAGCACTCCAATGATTCTTCTACTACTTCTACATATGAGGCATTTAACTTCAAACCTA
AACTTGCAT
Found at i:7330425 original size:15 final size:15
Alignment explanation
Indices: 7330405--7330435 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7330395 GAAATGCCTT
*
7330405 AGAAAAAAAGAGAAA
1 AGAAAAAAAAAGAAA
7330420 AGAAAAAAAAAGAAA
1 AGAAAAAAAAAGAAA
7330435 A
1 A
7330436 AAGTAAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AGAAAAAAAAAGAAA
Found at i:7330427 original size:17 final size:16
Alignment explanation
Indices: 7330407--7330454 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
7330397 AATGCCTTAG
7330407 AAAAAAAGAGAAAAGAA
1 AAAAAAAGA-AAAAGAA
*
7330424 AAAAAAAGAAAAAAGTA
1 AAAAAAAG-AAAAAGAA
*
7330441 AAAAGAAGAAAAAG
1 AAAAAAAGAAAAAG
7330455 GGTAAAAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 6 0.21
17 21 0.75
18 1 0.04
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (16 bp):
AAAAAAAGAAAAAGAA
Found at i:7330444 original size:24 final size:24
Alignment explanation
Indices: 7330408--7330453 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
7330398 ATGCCTTAGA
7330408 AAAAAAGAGAAAAGAAAAAAAAAG
1 AAAAAAGAGAAAAGAAAAAAAAAG
*
7330432 AAAAAAGTA-AAAAGAAGAAAAA
1 AAAAAAG-AGAAAAGAAAAAAAA
7330454 GGGTAAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 19 0.95
25 1 0.05
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (24 bp):
AAAAAAGAGAAAAGAAAAAAAAAG
Found at i:7331711 original size:14 final size:14
Alignment explanation
Indices: 7331692--7331725 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
7331682 ATCCACTTAG
7331692 AAAAAATGAAAAGA
1 AAAAAATGAAAAGA
*
7331706 AAAAAATGAAGAGA
1 AAAAAATGAAAAGA
7331720 AAAAAA
1 AAAAAA
7331726 GAAGAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (14 bp):
AAAAAATGAAAAGA
Found at i:7331729 original size:13 final size:13
Alignment explanation
Indices: 7331690--7331734 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
7331680 GAATCCACTT
* *
7331690 AGAAAAAATGAAA
1 AGAAAAAAAGAAG
7331703 AGAAAAAAATGAAG
1 AGAAAAAAA-GAAG
7331717 AGAAAAAAAGAAG
1 AGAAAAAAAGAAG
7331730 A-AAAA
1 AGAAAA
7331735 TAAATAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 4 0.14
13 13 0.45
14 12 0.41
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (13 bp):
AGAAAAAAAGAAG
Found at i:7331767 original size:14 final size:14
Alignment explanation
Indices: 7331692--7331767 Score: 54
Period size: 14 Copynumber: 5.6 Consensus size: 14
7331682 ATCCACTTAG
7331692 AAAAAATGAA-AAGA
1 AAAAAAT-AAGAAGA
7331706 AAAAAATGAAG-AGA
1 AAAAAAT-AAGAAGA
*
7331720 AAAAAAGAAGAA-A
1 AAAAAATAAGAAGA
* *
7331733 AATAAAT-A-AATA
1 AAAAAATAAGAAGA
*
7331745 AATAAATAAGAAGA
1 AAAAAATAAGAAGA
*
7331759 AAGAAATAA
1 AAAAAATAA
7331768 AATGGAATGA
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
11 2 0.04
12 9 0.17
13 10 0.19
14 31 0.60
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.11
Consensus pattern (14 bp):
AAAAAATAAGAAGA
Found at i:7332743 original size:22 final size:21
Alignment explanation
Indices: 7332690--7332746 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
7332680 TTTTAAACCT
**
7332690 AGTTTAGTTGGCACAAAAGCTT
1 AGTTT-GTTGGCACAAAAGCCC
*
7332712 AGATTTGTTGGCACATAAGCCC
1 AG-TTTGTTGGCACAAAAGCCC
7332734 AGTTTCGTTGGCA
1 AGTTT-GTTGGCA
7332747 TGTAAGTCTG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 3 0.10
22 24 0.80
23 3 0.10
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (21 bp):
AGTTTGTTGGCACAAAAGCCC
Found at i:7333096 original size:29 final size:29
Alignment explanation
Indices: 7333064--7333144 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 29
7333054 TTAAGTCCAT
7333064 TTTAGTTGGCACCCAAGTTTTAAACCTAA
1 TTTAGTTGGCACCCAAGTTTTAAACCTAA
* * ** *
7333093 TTTAATTGGCACTCAAGTTTTATGCCTAG
1 TTTAGTTGGCACCCAAGTTTTAAACCTAA
* *
7333122 TTTAGCTGGCACCCAGGTTTTAA
1 TTTAGTTGGCACCCAAGTTTTAA
7333145 GCCGAAATTA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (29 bp):
TTTAGTTGGCACCCAAGTTTTAAACCTAA
Found at i:7333237 original size:32 final size:33
Alignment explanation
Indices: 7333172--7333242 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
7333162 CCAAATAAAG
*
7333172 ATTTAAGCCCAGTTTAGCTAGCACCCAATGAAA
1 ATTTAAGCCCAGATTAGCTAGCACCCAATGAAA
* **
7333205 ATTTAAGCCTAGATTATTTAGCA-CCAATGAAA
1 ATTTAAGCCCAGATTAGCTAGCACCCAATGAAA
7333237 ATTTAA
1 ATTTAA
7333243 ATCTAACTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 15 0.44
33 19 0.56
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (33 bp):
ATTTAAGCCCAGATTAGCTAGCACCCAATGAAA
Found at i:7333503 original size:14 final size:15
Alignment explanation
Indices: 7333467--7333512 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
7333457 TGGTCGTCTT
7333467 AAAGAAAAAAGCAAA
1 AAAGAAAAAAGCAAA
7333482 AACA-AAAAAA-CAAA
1 AA-AGAAAAAAGCAAA
7333496 AAAGAAAAGAAG-AAA
1 AAAGAAAA-AAGCAAA
7333511 AA
1 AA
7333513 CTTTTCCTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
13 1 0.04
14 10 0.37
15 15 0.56
16 1 0.04
ACGTcount: A:0.83, C:0.07, G:0.11, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAAGCAAA
Found at i:7335108 original size:3 final size:3
Alignment explanation
Indices: 7335100--7335135 Score: 63
Period size: 3 Copynumber: 11.7 Consensus size: 3
7335090 AATAAAAGAC
7335100 AAT AAT AAT AAT AAT AAT AAT AAAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AA
7335136 GTTTTTTCTT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7335116 original size:22 final size:22
Alignment explanation
Indices: 7335090--7335135 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
7335080 TTTAAAAGAA
7335090 AATAA-AAGACAATAATAATAAT
1 AATAATAAGA-AATAATAATAAT
*
7335112 AATAATAATAAATAATAATAAT
1 AATAATAAGAAATAATAATAAT
7335134 AA
1 AA
7335136 GTTTTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 19 0.86
23 3 0.14
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (22 bp):
AATAATAAGAAATAATAATAAT
Found at i:7335258 original size:15 final size:18
Alignment explanation
Indices: 7335228--7335275 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 18
7335218 ATGTCGGAAA
* *
7335228 ATTATTAAATATTAAAA-
1 ATTAATAAATAATAAAAG
7335245 A-TAA-AAATAATAAAAG
1 ATTAATAAATAATAAAAG
7335261 ATTAATAAATAATAA
1 ATTAATAAATAATAA
7335276 GTATAATGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 10 0.38
16 3 0.12
17 4 0.15
18 9 0.35
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (18 bp):
ATTAATAAATAATAAAAG
Found at i:7335533 original size:31 final size:33
Alignment explanation
Indices: 7335489--7335552 Score: 89
Period size: 31 Copynumber: 2.0 Consensus size: 33
7335479 AAATTATAAG
7335489 TGAAATCTCAAAACCC-TATGTGAAACCTTAAAA
1 TGAAATCTCAAAACCCTTATGTGAAA-CTTAAAA
*
7335522 TGAAA-CT-AAAACCCTTTTGTGAAACTTAAAA
1 TGAAATCTCAAAACCCTTATGTGAAACTTAAAA
7335553 CCTTAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 14 0.48
32 10 0.34
33 5 0.17
ACGTcount: A:0.45, C:0.19, G:0.09, T:0.27
Consensus pattern (33 bp):
TGAAATCTCAAAACCCTTATGTGAAACTTAAAA
Found at i:7335564 original size:13 final size:13
Alignment explanation
Indices: 7335548--7335589 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
7335538 TTGTGAAACT
7335548 TAAAACCTTAAAA
1 TAAAACCTTAAAA
*
7335561 TAAAACCATAAAA
1 TAAAACCTTAAAA
* *
7335574 TAAAATCTTAGAA
1 TAAAACCTTAAAA
7335587 TAA
1 TAA
7335590 GTGAAACTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.62, C:0.12, G:0.02, T:0.24
Consensus pattern (13 bp):
TAAAACCTTAAAA
Done.