Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 52 of 129
Found at i:7340329 original size:64 final size:65
Alignment explanation
Indices: 7340254--7340375 Score: 174
Period size: 64 Copynumber: 1.9 Consensus size: 65
7340244 TCTGAAGGTG
* *
7340254 TTTTTGCCTAAAAACACCTTCAATAAGCCTTTATAAAAATTTATTGAAAGGATTATTAAAGATAT
1 TTTTTGCCTAAAAACACCTTCAATAAGCCCTCATAAAAATTTATTGAAAGGATTATTAAAGATAT
** * **
7340319 TTTTTG-CTAAAATTACCTTCAATAATCCCTCATAAAAATTTATTGAGGGGATTATTA
1 TTTTTGCCTAAAAACACCTTCAATAAGCCCTCATAAAAATTTATTGAAAGGATTATTA
7340376 GCCAAAAAGC
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
64 44 0.88
65 6 0.12
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.39
Consensus pattern (65 bp):
TTTTTGCCTAAAAACACCTTCAATAAGCCCTCATAAAAATTTATTGAAAGGATTATTAAAGATAT
Found at i:7351548 original size:24 final size:24
Alignment explanation
Indices: 7351521--7351573 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
7351511 GGGATAGGTG
*
7351521 GGTGGATAAATATCCAAGTTATAT
1 GGTGGACAAATATCCAAGTTATAT
*
7351545 GGTGGACCAATATCCAAG-T-TAT
1 GGTGGACAAATATCCAAGTTATAT
7351567 GGTGGAC
1 GGTGGAC
7351574 CAACCTCGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 10 0.37
23 1 0.04
24 16 0.59
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.28
Consensus pattern (24 bp):
GGTGGACAAATATCCAAGTTATAT
Found at i:7351570 original size:22 final size:24
Alignment explanation
Indices: 7351529--7351576 Score: 82
Period size: 22 Copynumber: 2.1 Consensus size: 24
7351519 TGGGTGGATA
7351529 AATATCCAAGTTATATGGTGGACC
1 AATATCCAAGTTATATGGTGGACC
7351553 AATATCCAAG-T-TATGGTGGACC
1 AATATCCAAGTTATATGGTGGACC
7351575 AA
1 AA
7351577 CCTCGGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 13 0.54
23 1 0.04
24 10 0.42
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (24 bp):
AATATCCAAGTTATATGGTGGACC
Found at i:7353676 original size:16 final size:16
Alignment explanation
Indices: 7353640--7353690 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
7353630 TATGCTTAGT
*
7353640 TTATTTAGCTATTTTAA
1 TTATTTATCTA-TTTAA
* *
7353657 TTATTTATGTATTTAC
1 TTATTTATCTATTTAA
7353673 TTATTTATCTATTTAA
1 TTATTTATCTATTTAA
7353689 TT
1 TT
7353691 TTAAATATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
16 20 0.69
17 9 0.31
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (16 bp):
TTATTTATCTATTTAA
Found at i:7353828 original size:3 final size:3
Alignment explanation
Indices: 7353820--7353850 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
7353810 AAATTTTTTA
7353820 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7353851 TTTTTAAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7361361 original size:16 final size:16
Alignment explanation
Indices: 7361342--7361388 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
7361332 ATTTAAATCC
7361342 AAATTAATTCAAACCT
1 AAATTAATTCAAACCT
* *
7361358 AAATTGATTCGAACCT
1 AAATTAATTCAAACCT
*
7361374 AAATTTATTCAAACC
1 AAATTAATTCAAACC
7361389 CAATTAACCC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.45, C:0.19, G:0.04, T:0.32
Consensus pattern (16 bp):
AAATTAATTCAAACCT
Found at i:7370275 original size:21 final size:23
Alignment explanation
Indices: 7370233--7370277 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
7370223 GCCATATTCA
*
7370233 TTTTCATTTATCTCATTCTTTTT
1 TTTTCATTTATCTCATTATTTTT
*
7370256 TTTTCTTTTAT-T-ATTATTTTT
1 TTTTCATTTATCTCATTATTTTT
7370277 T
1 T
7370278 CATTATCTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 9 0.45
22 1 0.05
23 10 0.50
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.76
Consensus pattern (23 bp):
TTTTCATTTATCTCATTATTTTT
Found at i:7377410 original size:144 final size:144
Alignment explanation
Indices: 7377082--7377520 Score: 401
Period size: 144 Copynumber: 3.1 Consensus size: 144
7377072 TTTTTATTTA
* * * ** *
7377082 TTTTAATGAACCAAAA-ATCATGAAATAATATTGAAACATGATTTGAAGCTTTT--TGCAAAAAA
1 TTTTAATGCACTAAAACAT-ATAAAATAATATCAAAACATGATCTGAAGCTTTTAATG-AAAAAA
* * * * * * *
7377144 TCGACCTTGAA-AAGGTCAAAGTATC-AAAATACCCC-AAAAGGTATTCT-AGTAATTTAACACC
64 -CAACCTT-AAGAAGGTCAAACTA-CAAAAATACCCCTAAATGGCATTTTGA-TAATTTCACAAC
*
7377205 ATTCAAGGTGTGATCAAGGT
125 TTTCAAGGTGTGATCAAGGT
* * * * * * *
7377225 TTTTAATGCATTAAAACATATGAAATAATATTAAAATATGATCTGTAGCTTTTCATGAAAAACCA
1 TTTTAATGCACTAAAACATATAAAATAATATCAAAACATGATCTGAAGCTTTTAATGAAAAAACA
* ** * * * *
7377290 ACTTTATTAAGGTCAAGCTATAAAAATACCCCTAAA-GGACATTTTGATAATTTCATAACTTTTA
66 ACCTTAAGAAGGTCAAACTACAAAAATACCCCTAAATGG-CATTTTGATAATTTCACAACTTTCA
*
7377354 AGGTGCGATCAAGGT
130 AGGTGTGATCAAGGT
* *
7377369 TTTTAATGCACTAAAA-ATCATAAAATAATGTCAAAACATGATCTGAAGCTTTTAATGAAAAAAT
1 TTTTAATGCACTAAAACAT-ATAAAATAATATCAAAACATGATCTGAAGCTTTTAATGAAAAAAC
* * * * * * *
7377433 GACCTTAAGAAGGTCAAATTACGAAAATACCCTTAAATGGTATTTTGATAATTTCACACCTTTCG
65 AACCTTAAGAAGGTCAAACTACAAAAATACCCCTAAATGGCATTTTGATAATTTCACAACTTTCA
7377498 AGGTGTGATCAAGGT
130 AGGTGTGATCAAGGT
7377513 TTTTAATG
1 TTTTAATG
7377521 AATTAAATTC
Statistics
Matches: 240, Mismatches: 46, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
142 1 0.00
143 72 0.30
144 162 0.68
145 5 0.02
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.32
Consensus pattern (144 bp):
TTTTAATGCACTAAAACATATAAAATAATATCAAAACATGATCTGAAGCTTTTAATGAAAAAACA
ACCTTAAGAAGGTCAAACTACAAAAATACCCCTAAATGGCATTTTGATAATTTCACAACTTTCAA
GGTGTGATCAAGGT
Found at i:7378088 original size:49 final size:50
Alignment explanation
Indices: 7378034--7378637 Score: 506
Period size: 49 Copynumber: 12.2 Consensus size: 50
7378024 TTTTAAATTT
* * * *
7378034 AACTTT-AAAATCTTAATCTTTAGAAAGCTACTTTAAATAGAGGATTTAA
1 AACTTTAAAAATCTTAATCTTTAGAAAGCTCCTCTAAATAGAGGCTTTGA
* * * * * * * *
7378083 AACTTTAAAAATATCTTAA-CTTTTGAAAAACTCATTTAAACAAAGGTTTTTA
1 AACTTT-AAAA-ATCTTAATCTTTAG-AAAGCTCCTCTAAATAGAGGCTTTGA
* * * * * * *
7378135 AACTTTAAAAATCTT-GTCTTTGGAATGCTCTTCTAAACAAAAGCTTTGA
1 AACTTTAAAAATCTTAATCTTTAGAAAGCTCCTCTAAATAGAGGCTTTGA
* * ** * * *
7378184 AAC-TTAAAAATC-TCATCTTTAGAATGCTTTTCTAAACAAATGCTTTGA
1 AACTTTAAAAATCTTAATCTTTAGAAAGCTCCTCTAAATAGAGGCTTTGA
* * *
7378232 AAATTT-AAAATCTTAATC-TTAGGAAAGCTTCTCTAAA-A-A-GCTTTCA
1 AACTTTAAAAATCTTAATCTTTA-GAAAGCTCCTCTAAATAGAGGCTTTGA
* * * *
7378278 AACTTTAAAATTCTT-ATCTTTTGAAAGCTCCTCTAAATAGAAGCTTTCA
1 AACTTTAAAAATCTTAATCTTTAGAAAGCTCCTCTAAATAGAGGCTTTGA
* *
7378327 AACTTTTAAAAATCTTAATCTTTGGAAAGCTCCTCTAAATAAAGGCTTTGA
1 AAC-TTTAAAAATCTTAATCTTTAGAAAGCTCCTCTAAATAGAGGCTTTGA
* * * *
7378378 AACTTTAAAAAAATCCTAA-CTTTTAGAAAGCTCCTCTAAGTAGAGGTTTTAA
1 AACTTT--AAAAATCTTAATC-TTTAGAAAGCTCCTCTAAATAGAGGCTTTGA
* ** * * *
7378430 AACTTTAAAAATCTT-AT-TTTGGGAAAGCTAATCTAAACAAAAGCTTTGA
1 AACTTTAAAAATCTTAATCTTT-AGAAAGCTCCTCTAAATAGAGGCTTTGA
* *
7378479 AACTTTAAAAATCTT-ATCTTTAGAAAGCTCCTTTAAATAGAGGCTTTAA
1 AACTTTAAAAATCTTAATCTTTAGAAAGCTCCTCTAAATAGAGGCTTTGA
* * * *
7378528 AACTTTAAAAATCTT-GTCTTTGGAAAGCACCTCTAAATAGAGGGTTTGA
1 AACTTTAAAAATCTTAATCTTTAGAAAGCTCCTCTAAATAGAGGCTTTGA
* * *
7378577 AACGTT-AAAATCTTAATCTTTGGAAAGCTCCTTTAAATAGAGG-TTGTGA
1 AACTTTAAAAATCTTAATCTTTAGAAAGCTCCTCTAAATAGAGGCTT-TGA
7378626 AACTTTAAAAAT
1 AACTTTAAAAAT
7378638 ATTGTCTTTG
Statistics
Matches: 460, Mismatches: 70, Indels: 49
0.79 0.12 0.08
Matches are distributed among these distances:
46 28 0.06
47 12 0.03
48 65 0.14
49 195 0.42
50 40 0.09
51 46 0.10
52 74 0.16
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (50 bp):
AACTTTAAAAATCTTAATCTTTAGAAAGCTCCTCTAAATAGAGGCTTTGA
Found at i:7379126 original size:6 final size:6
Alignment explanation
Indices: 7379117--7379158 Score: 57
Period size: 6 Copynumber: 6.7 Consensus size: 6
7379107 TCATCATCAT
*
7379117 TTTTCA TTTTTCA TTTTTCA TTTTTA TTTTCA TTTTCA TTTT
1 TTTTCA -TTTTCA -TTTTCA TTTTCA TTTTCA TTTTCA TTTT
7379159 TTTCCATTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
6 20 0.61
7 13 0.39
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.74
Consensus pattern (6 bp):
TTTTCA
Found at i:7379134 original size:8 final size:7
Alignment explanation
Indices: 7379113--7379207 Score: 79
Period size: 7 Copynumber: 12.7 Consensus size: 7
7379103 CATTTCATCA
7379113 TCATTTT
1 TCATTTT
7379120 TCATTTT
1 TCATTTT
7379127 TCATTTT
1 TCATTTT
7379134 TCATTTT
1 TCATTTT
7379141 T-A-TTT
1 TCATTTT
7379146 TCA-TTT
1 TCATTTT
7379152 TCATTTTTT
1 TCA--TTTT
7379161 TCCATTTT
1 T-CATTTT
7379169 TCCACTTTTT
1 T-CA--TTTT
*
7379179 TCATTTG
1 TCATTTT
7379186 TCAATTTCT
1 TC-ATTT-T
7379195 TCATTTCT
1 TCATTT-T
7379203 TCATT
1 TCATT
7379208 CATTTTTTTC
Statistics
Matches: 77, Mismatches: 2, Indels: 17
0.80 0.02 0.18
Matches are distributed among these distances:
5 4 0.05
6 8 0.10
7 27 0.35
8 23 0.30
9 8 0.10
10 7 0.09
ACGTcount: A:0.15, C:0.18, G:0.01, T:0.66
Consensus pattern (7 bp):
TCATTTT
Found at i:7379233 original size:22 final size:22
Alignment explanation
Indices: 7379198--7379244 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
7379188 AATTTCTTCA
*
7379198 TTTCTTCATTCATTT-TTTTCT
1 TTTCTTCATTCATTTCATTTCT
*
7379219 TTTCTATCTTTCATTTCATTTCT
1 TTTCT-TCATTCATTTCATTTCT
7379242 TTT
1 TTT
7379245 TTTTTATGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 9 0.41
23 8 0.36
ACGTcount: A:0.11, C:0.19, G:0.00, T:0.70
Consensus pattern (22 bp):
TTTCTTCATTCATTTCATTTCT
Found at i:7380523 original size:129 final size:130
Alignment explanation
Indices: 7380281--7381786 Score: 933
Period size: 130 Copynumber: 11.7 Consensus size: 130
7380271 TGGGGTTATA
* * * **
7380281 TTCATAAATT-TGGTATG-GGAGCATAATAGTTAATTTGGCTACCTAT-TAACTTT-TTACCATA
1 TTCAT-AATTATGGTATGAGG-GCATAATAGTCAATTTGGCCA-C-ATGTAAATTTCTTATAATA
* * *
7380342 TAAT-GAAGAGGGTATTTTTGGTAATTTTATAAAGGATTATTTGGT-AATAATTATAAGAGAATG
62 TAATGGAA-AGGGTA-TTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGAGAATG
7380405 GGTATT
125 GGTATT
* * * * *
7380411 TTTATAATTATGGTATGAGGGAATAATAGT-ACATTTGGCCACATGTCACTTTCTTATAATGT-A
1 TTCATAATTATGGTATGAGGGCATAATAGTCA-ATTTGGCCACATGTAAATTTCTTATAATATAA
* * * * * *
7380474 TGTAAAGGGTATTTAGGTGATTTCATAAGGGTTTATGTAGTAAATAATTATAAGAGAATGGATAT
65 TGGAAAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGAGAATGGGTAT
7380539 T
130 T
* * * * * * *
7380540 TTCATAATTATGGAATGAGGGCATAATAGTCGATGTGACCACATGTTAATTTTTTATTATATAAT
1 TTCATAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTAAATTTCTTATAATATAAT
* * * * * **
7380605 GGAATGAGTATTTTGGTAATTTTAT-AGGCGATTATTTAGTAAATAGTTATAAGAAAAAAGGTAT
66 GGAAAGGGTATTTTGGTAATTTCATAAGG-GATTATTTAGTAAATAATTATAAGAGAATGGGTAT
7380669 T
130 T
* ** * * * *
7380670 TTCATAATTATAGTAAAAGGCCATAATAGTCAATTTGGCCATATGTAAATTACTTATCATATAAT
1 TTCATAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTAAATTTCTTATAATATAAT
* * * * *
7380735 GGAAATGATATTTTGGTAATTTCATAAGGGATTATTTCA-TAAAAAATAATAA-ATAA-GGAGTA
66 GGAAAGGGTATTTTGGTAATTTCATAAGGGATTATTT-AGTAAATAATTATAAGAGAATGG-GTA
7380797 TT
129 TT
* * * * * ** * * *
7380799 TT--TAATTATGGTATGAGGGTATAATGGTCCATTTAGCTATTTGTCAATTTCTTATCACAT-AT
1 TTCATAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTAAATTTCTTATAATATAAT
** ** * * * * * * * * *
7380861 TAAAATGGGTGCTTTGATAGTTTGAT-AGAGAATTATTTGGTGAATAATCATAAGATAAGGGGTA
66 GGAAA-GGGTATTTTGGTAATTTCATAAG-GGATTATTTAGTAAATAATTATAAGAGAATGGGTA
7380925 TT
129 TT
* ** ** * **
7380927 TTCATAATTATGATATGAATGTGTAATAGTCAATTTGGCCACATGTCAATTTCTTATCGTATAAT
1 TTCATAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTAAATTTCTTATAATATAAT
* * ** * ** * * * **
7380992 AGAAAAGACAATTTGAAAATTTCATTAGGGCTTAGTTAGTAAATAATTATAAGAGAATGAATATT
66 GGAAAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGAGAATGGGTATT
* * * * * * * * *
7381057 CTCATAATTATGGTATAAGGGCATAATAGGCCATTTGACCACATGTTAAGTTCCTATCATATAAT
1 TTCATAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTAAATTTCTTATAATATAAT
* ** * ** * *
7381122 GGAATA-GGTTTTTTGGTAATTTCAT-AGACACTTATTTAGCAAATTGTTATAAGAGAAAGTGTA
66 GGAA-AGGGTATTTTGGTAATTTCATAAGGGA-TTATTTAGTAAATAATTATAAGAGAATGGGTA
7381185 TT
129 TT
* * * * * ** *
7381187 ATCATTATTATGGTATGAGGGTATAATAGTCATTTTGACCACATGTTAACCTT-TTATCATATAA
1 TTCATAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATG-TAAATTTCTTATAATATAA
* * * *
7381251 TAGAAAGAGTATTTTGGTAACTTT-ATTAGGGATTATTTAGTAAATAATTATACA-A-AA--AGT
65 TGGAAAGGGTATTTTGGTAA-TTTCATAAGGGATTATTTAGTAAATAATTATA-AGAGAATGGGT
7381311 ATT
128 ATT
* * * *** * * *
7381314 TT-AGT-ATTATGATATAAGGTCATAATAGTTC-ATTTGATGACATGTCAATTTTTTATCATATA
1 TTCA-TAATTATGGTATGAGGGCATAATAG-TCAATTTGGCCACATGTAAATTTCTTATAATATA
* ** * * * * * * *
7381376 ACGGAAATAGAATTTTGGTAATTTCATAAAGGATTGTTTAGAAAATAATTAGAAAAGAATGGATA
64 ATGGAAAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGAGAATGGGTA
7381441 -T
129 TT
* * * ** * * * *
7381442 TTCGTATTTATGGTATG-CGATATAATAGTCAATTTAGCCACATGTTAATCTCTTATCATATAAT
1 TTCATAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTAAATTTCTTATAATATAAT
* * * * ** *
7381506 -GAAATGGCATATTGGTAATTTCATAA-AGAAAATTTAGTAAATAATTATAAGA-AA--AGTATT
66 GGAAAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGAGAATGGGTATT
* * * * * * *
7381566 TTCATAATTATGGTTTGATGGCATAATAGTTAA-TTGTCCACATCTCAATTTCTTATTATATAAT
1 TTCATAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTAAATTTCTTATAATATAAT
* * * * ** ** * * ** *
7381630 TGAAATGATATTTTTGTAATTTTGT-AGTAAAATATTTAGTAAATAATTATTAGAGAAACGATAT
66 GGAAAGGGTATTTTGGTAATTTCATAAG-GGATTATTTAGTAAATAATTATAAGAGAATGGGTAT
7381694 T
130 T
* * * * * * * *
7381695 TTCATAATTATGGTACGAGGACATAATAGTCTATTTGGCAATATGTCAATTTCTTATCATGTAAT
1 TTCATAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTAAATTTCTTATAATATAAT
* * *
7381760 AGAAATGGTATTTTGATAATTTCATAA
66 GGAAAGGGTATTTTGGTAATTTCATAA
7381787 TAATTGTATG
Statistics
Matches: 1062, Mismatches: 264, Indels: 99
0.75 0.19 0.07
Matches are distributed among these distances:
123 2 0.00
124 41 0.04
125 39 0.04
126 130 0.12
127 114 0.11
128 74 0.07
129 154 0.15
130 482 0.45
131 26 0.02
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.39
Consensus pattern (130 bp):
TTCATAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTAAATTTCTTATAATATAAT
GGAAAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGAGAATGGGTATT
Found at i:7381503 original size:128 final size:123
Alignment explanation
Indices: 7381192--7381595 Score: 327
Period size: 126 Copynumber: 3.2 Consensus size: 123
7381182 GTATTATCAT
* *
7381192 TATTATGGTATGAGGGTATAATAGTCATTTTGACCACATGTTAACCTTTTATCATATAATAGAAA
1 TATTATGGTATGA-GGTATAATAGTCATTTAG-CCACATGTTAATCTTTTATCATATAA-AGAAA
* * * * * * *
7381257 GAGTATTTTGGTAACTTT-ATTAGGGATTATTTAGTAAATAATTATACAAAAAGTATTTTAG
63 TAGAATTTTGGTAA-TTTCATAAAGGATTATTTAGAAAATAATTAGACAAAAAGGATTTTAG
* * * * *
7381318 TATTATGATATAAGGTCATAATAGTTCATTTGATG--ACATGTCAATTTTTTATCATATAACGGA
1 TATTATGGTATGAGGT-ATAATAG-TCATTT-A-GCCACATGTTAATCTTTTATCATATAA-AGA
* *
7381381 AATAGAATTTTGGTAATTTCATAAAGGATTGTTTAGAAAATAATTAGA-AAAGAATGGATATTTC
61 AATAGAATTTTGGTAATTTCATAAAGGATTATTTAGAAAATAATTAGACAAA-AA-GGAT-TTTA
7381445 G
123 G
* * * *
7381446 TATTTATGGTATGCGATATAATAGTCAATTTAGCCACATGTTAATCTCTTATCATATAATGAAAT
1 TA-TTATGGTATGAGGTATAATAGTC-ATTTAGCCACATGTTAATCTTTTATCATATAAAGAAAT
* * * ** * * *
7381511 GGCATATTGGTAATTTCATAAA-GAAAATTTAGTAAATAATTATA-AGAAAAGTATTTTCA-
64 AGAATTTTGGTAATTTCATAAAGGATTATTTAGAAAATAATTAGACA-AAAAGGATTTT-AG
* *
7381570 TAATTATGGTTTGATGGCATAATAGT
1 T-ATTATGGTATGA-GGTATAATAGT
7381596 TAATTGTCCA
Statistics
Matches: 223, Mismatches: 39, Indels: 33
0.76 0.13 0.11
Matches are distributed among these distances:
124 13 0.06
125 22 0.10
126 101 0.45
127 38 0.17
128 38 0.17
129 11 0.05
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (123 bp):
TATTATGGTATGAGGTATAATAGTCATTTAGCCACATGTTAATCTTTTATCATATAAAGAAATAG
AATTTTGGTAATTTCATAAAGGATTATTTAGAAAATAATTAGACAAAAAGGATTTTAG
Found at i:7382363 original size:129 final size:130
Alignment explanation
Indices: 7382222--7382577 Score: 327
Period size: 129 Copynumber: 2.8 Consensus size: 130
7382212 TAAAATACAC
*
7382222 TTTCAATTATATGATAAAAAACAAACATGTGG-TCAAA-TGATTTATTATGCCTTCATACCATAA
1 TTTCAATTATATGATAAAAAACAAACATGTGGCT-AAATTGA-CTATTATGCCTTCATACCATAA
* * * *
7382285 TTATGAAAATACCTTTTCTCTTATAATTATTTACTAAATAATC-TCTTAA-AAATTACAAAAATG
64 TTACGAAAATACCTCTTCTCATATAATTATTTACTAAATAATCATC--AAGAAATTACAAAAATA
7382348 CCTT
127 CCTT
*** *** *
7382352 TTTC-ATTATATGATATGGAATTTACATGTGGCTAAATTGACTATTATGCCTTCATATCATAATT
1 TTTCAATTATATGATAAAAAACAAACATGTGGCTAAATTGACTATTATGCCTTCATACCATAATT
* * *
7382416 ACGAAAATATCTCTTCTCATCTAATTATTTACTAAATAATCATCAAGAAATTACCAAAATACC-T
66 ACGAAAATACCTCTTCTCATATAATTATTTACTAAATAATCATCAAGAAATTACAAAAATACCTT
* * * *** ** * *
7382480 TTT-AGATTACATGCTAAGAAATTGACATGTGCGC-AAATAAACTATTATTCCCTCATACCATAA
1 TTTCA-ATTATATGATAAAAAACAAACATGTG-GCTAAATTGACTATTATGCCTTCATACCATAA
* * *
7382543 TTACG-AAATAACCCCTTCGCTTATAATTA-TTACTA
64 TTACGAAAAT-ACCTCTTCTCATATAATTATTTACTA
7382578 TTACAAAATA
Statistics
Matches: 188, Mismatches: 30, Indels: 18
0.80 0.13 0.08
Matches are distributed among these distances:
128 16 0.09
129 160 0.85
130 12 0.06
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (130 bp):
TTTCAATTATATGATAAAAAACAAACATGTGGCTAAATTGACTATTATGCCTTCATACCATAATT
ACGAAAATACCTCTTCTCATATAATTATTTACTAAATAATCATCAAGAAATTACAAAAATACCTT
Found at i:7383042 original size:77 final size:76
Alignment explanation
Indices: 7382909--7383077 Score: 203
Period size: 77 Copynumber: 2.2 Consensus size: 76
7382899 TCCCTCATAA
* * * *
7382909 AATTACCAAAATACCCTTTACATTATATGATAAGAAATTAACGTATGGCCAAATTGACTATTATG
1 AATTACCAAAAAACCCTTTACATTATATAATAAGAAATTAACATATGACCAAATTGACTATTATG
7382974 CCTTCATACCAT
66 CC-TCATACCAT
* * * * * * *
7382986 AATTACCAAAAAACTCTTTTCATTATATAATAAGAAATTGACATGTGACTATATTGATTATTATG
1 AATTACCAAAAAACCCTTTACATTATATAATAAGAAATTAACATATGACCAAATTGACTATTATG
*
7383051 TCTCATACCAT
66 CCTCATACCAT
* *
7383062 AATTACGAAAATACCC
1 AATTACCAAAAAACCC
7383078 ATTCTTTTAT
Statistics
Matches: 77, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
76 22 0.29
77 55 0.71
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (76 bp):
AATTACCAAAAAACCCTTTACATTATATAATAAGAAATTAACATATGACCAAATTGACTATTATG
CCTCATACCAT
Found at i:7383224 original size:130 final size:128
Alignment explanation
Indices: 7382986--7384561 Score: 1225
Period size: 130 Copynumber: 12.2 Consensus size: 128
7382976 TTCATACCAT
* * * * * *
7382986 AATTACCAAAAAACTCTTTTCATTATATAATAAGAAATTGACATGTGACTATATTGATTATTATG
1 AATTACCAAAATAC-CTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATAGATTATTATG
* * * *
7383051 -TCTCATACCATAATTACGAAAATACCCATTCTT-TTATAATTATTTCCTAAATAATCCCTCATA
65 CCCTCATACCATAATTACAAAAATACCC-TTTTTCTTATAATTATTTACTAAATAATCCCT-ATA
7383114 A
128 A
* * * * * *** * * *
7383115 AATTACCAAAATACCATTTTCGTTATAGGATAAAAAATTGATATGTTGTTGAATGGACTATTATA
1 AATTACCAAAATACC-TTTTCATTATATGATAAGAAATTGACATGTGGCCAAATAGATTATTATG
* * * *
7383180 CCCTCATACCATAATTACAAAAATACTCTTTTTCTTATAATTATTTACTAAATAATCCATCTCGA
65 CCCTCATACCATAATTACAAAAATACCCTTTTTCTTATAATTATTTACTAAATAATCCCTAT-AA
* * * *
7383245 AATTACTAAAATACCCTTTCATTATGA-GATAA-AAACTTGACATGTGACCAAATTGATTATTAT
1 AATTACCAAAATACCTTTTCATTAT-ATGATAAGAAA-TTGACATGTGGCCAAATAGATTATTAT
* * * * * * *
7383308 ACCCTCATACAATTATTACGAAAACACCATTTCTT-TTATAATTATTTGCTAAATAATCCCT-TG
64 GCCCTCATACCATAATTACAAAAATACCCTTT-TTCTTATAATTATTTACTAAATAATCCCTAT-
7383371 AGA
127 A-A
* * * * * * * * * *
7383374 AATTACGAAAATAACCTTTACTTTATATGTTAGGAAATTTATATGTGGCTAAATTGACTATTATG
1 AATTACCAAAAT-ACCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATAGATTATTATG
* * * * * * **
7383439 CCCACATGCCAGAATTACGAAAATACCCTTTCTCTTATGATTATTTACTAAATAATCCTCTATTG
65 CCCTCATACCATAATTACAAAAATACCCTTTTTCTTATAATTATTTACTAAATAATCC-CTATAA
* * * * * * * *
7383504 AATTACTATAATGCCCTTTAATTATATGATAAGAAATTGACATGTAGCCAAATTGACTATTATGC
1 AATTACCAAAATACCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATAGATTATTATGC
* * * *
7383569 TCTCAAATCATAATTACAAAACAT-CCC-TTTTCTTATAATTATTTACTAAATAATCCCTATGA
66 CCTCATACCATAATTACAAAA-ATACCCTTTTTCTTATAATTATTTACTAAATAATCCCTATAA
* * * * *
7383631 AA-T-------TACCTTTTCATTATATGATAAAAAATTGACATATGGCTAAACAGATTATTATAC
1 AATTACCAAAATACCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATAGATTATTATGC
* * * * * *
7383688 CTTCATACCATAATTGCAGAAATACAACTTCTT-GTATAATTATTTACTAAATAATCACCTATAA
66 CCTCATACCATAATTACAAAAATAC-CCTTTTTCTTATAATTATTTACTAAATAATC-CCTATAA
* * *
7383752 AATTACCAAAAATACCATTTTCATTATTTGATAAGAAATTGACATGTAGTCAAATAGATTATTAT
1 AATTACC-AAAATACC-TTTTCATTATATGATAAGAAATTGACATGTGGCCAAATAGATTATTAT
* * ** * * ** * *
7383817 G-CTTACATACCAAAATTATGAAAATACCCATTCTCCAATAATTATTTACTAAATAAT-CTTTTA
64 GCCCT-CATACCATAATTACAAAAATACCCTTTTTCTTATAATTATTTACTAAATAATCCCTAT-
7383880 ATA
127 A-A
* * * * *
7383883 AATTACTAAAATGCCTTTTTCATTATATGATAAAAAATTGACATGTGGTCAAATAAATTATTATG
1 AATTACCAAAATACC-TTTTCATTATATGATAAGAAATTGACATGTGGCCAAATAGATTATTATG
* ** ** * *
7383948 CCCTTATATAATAATTATGAAAATACCATTTCTCTTAT-ATCTATTTACTAAATAATCCCTCA-A
65 CCCTCATACCATAATTACAAAAATACCCTTTTTCTTATAAT-TATTTACTAAATAATCCCT-ATA
7384011 GA
128 -A
* * * * * *
7384013 AATTACTAAAGTGCCATTTCCATTATATGATAAGAAATTGATATGTGGCCAAATAGACTATTATG
1 AATTACCAAAATACC-TTTTCATTATATGATAAGAAATTGACATGTGGCCAAATAGATTATTATG
* * *
7384078 CCCTCATACCATAATGACAAAAATACCTCTTCTT-TTATAATTATTTACTAAATAATCCCTAATG
65 CCCTCATACCATAATTACAAAAATACC-CTTTTTCTTATAATTATTTACTAAATAATCCCT-ATA
7384142 A
128 A
* * * * ** *
7384143 AATTATCAAAATACTCTTTCCTTTATATCATAAGAAATCAACATGTGGCCAAATGGATTA-TATT
1 AATTACCAAAATAC-CTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATAGATTATTA-T
* * ** * * * *
7384207 ACCCTTATAATATAATTACAAAAATACACATTTTCTTATAATTATTTTCTAAATAATCCCTTATG
64 GCCCTCATACCATAATTACAAAAATACCCTTTTTCTTATAATTATTTACTAAATAATCCC-TATA
7384272 A
128 A
* * * * * * *
7384273 AATTACCAAAATA-CTATTGCCATTATATGTTAAGAAATTGATATGTAGACTAAT-GCACTATTA
1 AATTACCAAAATACCT-TT-TCATTATATGATAAGAAATTGACATGTGGCCAAATAG-ATTATTA
* * *
7384336 TGCCCTCATATCGTAATTATC-AAAATACCCTTCTT-TTATAATTATTTACTAAATAATCTCCTA
63 TGCCCTCATACCATAATTA-CAAAAATACCCTTTTTCTTATAATTATTTACTAAATAATC-CCTA
7384399 CT-A
126 -TAA
* * *
7384402 AATTACCAAAATGCCTTTT-ATGTTATATGATAAGAAATTGACATATGGCCAAATGGATTATTAT
1 AATTACCAAAATACCTTTTCA--TTATATGATAAGAAATTGACATGTGGCCAAATAGATTATTAT
* * * * * * * *
7384466 GTCCTCATATCATAATTACTAAAATACCCCTTATCTTATCATTA-TTACTAAATAATCCTTTATT
64 GCCCTCATACCATAATTACAAAAATACCCTTTTTCTTATAATTATTTACTAAATAATCC-CTATA
7384530 A
128 A
* * *
7384531 AATTATCAAAGTACCCTTTCCATTA-ATGATA
1 AATTACCAAAATA-CCTTTTCATTATATGATA
7384562 TACATTGAAC
Statistics
Matches: 1155, Mismatches: 231, Indels: 123
0.77 0.15 0.08
Matches are distributed among these distances:
118 2 0.00
119 59 0.05
120 23 0.02
121 11 0.01
122 1 0.00
126 1 0.00
127 7 0.01
128 43 0.04
129 351 0.30
130 551 0.48
131 105 0.09
132 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.37
Consensus pattern (128 bp):
AATTACCAAAATACCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATAGATTATTATGC
CCTCATACCATAATTACAAAAATACCCTTTTTCTTATAATTATTTACTAAATAATCCCTATAA
Found at i:7383379 original size:259 final size:259
Alignment explanation
Indices: 7383003--7384523 Score: 1235
Period size: 259 Copynumber: 5.9 Consensus size: 259
7382993 AAAAAACTCT
* * * * * *
7383003 TTTCATTATATAATAAGAAATTGACATGTGACTATATTGATTATTATG-TCTCATA-CCATAATT
1 TTTCATTATATGATAAGAAATTGACATGTGACCAAATTGACTATTATGCCCTCATATCAATAATT
* *
7383066 ACGAAAATACCCA-TTCTTTTATAATTATTTCCTAAATAATCCCTCATAAAATTACCAAAATACC
66 ACGAAAATACCCATTTCTTTTATAATTATTTACTAAATAATCCCT-ATGAAATTACCAAAATACC
* * * * *** *
7383130 ATTTTCGTTATAGGATAAAAAATTGATATGTTGTTGAATGGACTATTATACCCTCATACCATAAT
130 -TTTTCATTATATGATAAAAAATTGACATGTGGCCAAATGGATTATTATACCCTCATACCATAAT
* *
7383195 TACAAAAATACTCTTTTTCTTATAATTATTTACTAAATAATCCATCTCGAAATTACTAAAATACC
194 TACAAAAATACACTTTTTCTTATAATTATTTACTAAATAATCCATCTTGAAATTACTAAAATACC
*
7383260 C
259 A
* * *
7383261 TTTCATTATGA-GATAA-AAACTTGACATGTGACCAAATTGATTATTATACCCTCATA-CAATTA
1 TTTCATTAT-ATGATAAGAAA-TTGACATGTGACCAAATTGACTATTATGCCCTCATATCAATAA
* * *
7383323 TTACGAAAACA-CCATTTCTTTTATAATTATTTGCTAAATAATCCCT-TGAGAAATTACGAAAAT
64 TTACGAAAATACCCATTTCTTTTATAATTATTTACTAAATAATCCCTAT--GAAATTACCAAAAT
* * * ** * * * * * * * * *
7383386 AACCTTTACTTTATATGTTAGGAAATTTATATGTGGCTAAATTGACTATTATGCCCACATGCCAG
127 -ACCTTTTCATTATATGATAAAAAATTGACATGTGGCCAAATGGATTATTATACCCTCATACCAT
* * * * *
7383451 AATTACGAAAATACCCTTTCTCTTATGATTATTTACTAAATAATCC-TCTATTG-AATTACTATA
191 AATTACAAAAATACACTTTTTCTTATAATTATTTACTAAATAATCCATC--TTGAAATTACTAAA
* *
7383514 ATGCCC
254 ATACCA
* * *
7383520 TTTAATTATATGATAAGAAATTGACATGT-AGCCAAATTGACTATTATGCTCTCAAATC-ATAAT
1 TTTCATTATATGATAAGAAATTGACATGTGA-CCAAATTGACTATTATGCCCTCATATCAATAAT
* *
7383583 TAC-AAAACATCCC-TTT-TCTTATAATTATTTACTAAATAATCCCTATGAAA-T-------TAC
65 TACGAAAATA-CCCATTTCTTTTATAATTATTTACTAAATAATCCCTATGAAATTACCAAAATAC
* * ** *
7383637 CTTTTCATTATATGATAAAAAATTGACATATGGCTAAACAGATTATTATACCTTCATACCATAAT
129 CTTTTCATTATATGATAAAAAATTGACATGTGGCCAAATGGATTATTATACCCTCATACCATAAT
* * * * * * *
7383702 TGCAGAAATACAACTTCTT-GTATAATTATTTACTAAATAAT-CACCTATAAAATTACCAAAAAT
194 TACAAAAATAC-ACTTTTTCTTATAATTATTTACTAAATAATCCATCT-TGAAATTA-CTAAAAT
7383765 ACCA
256 ACCA
* * * * * *
7383769 TTTTCATTATTTGATAAGAAATTGACATGT-AGTCAAATAGATTATTATG-CTTACATACCAA-A
1 -TTTCATTATATGATAAGAAATTGACATGTGA-CCAAATTGACTATTATGCCCT-CATATCAATA
* *** ** *
7383831 ATTATGAAAATACCCA-TTCTCCAATAATTATTTACTAAATAATCTTTTAAT-AAATTACTAAAA
63 ATTACGAAAATACCCATTTCTTTTATAATTATTTACTAAATAATC-CCT-ATGAAATTACCAAAA
* * ** * * **
7383894 TGCCTTTTTCATTATATGATAAAAAATTGACATGTGGTCAAATAAATTATTATGCCCTTATATAA
126 TACC-TTTTCATTATATGATAAAAAATTGACATGTGGCCAAATGGATTATTATACCCTCATACCA
** * * **
7383959 TAATTATGAAAATAC-CATTTCTCTTAT-ATCTATTTACTAAATAATCCCTCAAGAAATTACTAA
190 TAATTACAAAAATACAC-TTTTTCTTATAAT-TATTTACTAAATAATCCATCTTGAAATTACTAA
* *
7384022 AGTGCCA
253 AATACCA
* * * *
7384029 TTTCCATTATATGATAAGAAATTGATATGTGGCCAAATAGACTATTATGCCCTCATA-CCATAAT
1 TTT-CATTATATGATAAGAAATTGACATGTGACCAAATTGACTATTATGCCCTCATATCAATAAT
* * *
7384093 GACAAAAATA-CC-TCTTCTTTTATAATTATTTACTAAATAATCCCTAATGAAATTATCAAAATA
65 TACGAAAATACCCAT-TTCTTTTATAATTATTTACTAAATAATCCCT-ATGAAATTACCAAAATA
* * * * ** * **
7384156 CTCTTTCCTTTATATCATAAGAAATCAACATGTGGCCAAATGGATTA-TATTACCCTTATAATAT
128 C-CTTTTCATTATATGATAAAAAATTGACATGTGGCCAAATGGATTATTA-TACCCTCATACCAT
* * * *
7384220 AATTACAAAAATACACATTTTCTTATAATTATTTTCTAAATAATCCCT-TATGAAATTACCAAAA
191 AATTACAAAAATACACTTTTTCTTATAATTATTTACTAAATAATCCATCT-TGAAATTACTAAAA
*
7384284 TACTA
255 TACCA
* * * * *
7384289 TTGCCATTATATGTTAAGAAATTGATATGTAGA-CTAA-TGCACTATTATGCCCTCATATC-GTA
1 TT-TCATTATATGATAAGAAATTGACATGT-GACCAAATTG-ACTATTATGCCCTCATATCAATA
7384351 ATTATC-AAAATACCC--TTCTTTTATAATTATTTACTAAATAATCTCCTACT-AAATTACCAAA
63 ATTA-CGAAAATACCCATTTCTTTTATAATTATTTACTAAATAATC-CCTA-TGAAATTACCAAA
* * * ** *
7384412 ATGCCTTTT-ATGTTATATGATAAGAAATTGACATATGGCCAAATGGATTATTATGTCCTCATAT
125 ATACCTTTTCA--TTATATGATAAAAAATTGACATGTGGCCAAATGGATTATTATACCCTCATAC
* * * * *
7384476 CATAATTACTAAAATACCCCTTATCTTATCATTA-TTACTAAATAATCC
188 CATAATTACAAAAATACACTTTTTCTTATAATTATTTACTAAATAATCC
7384524 TTTATTAAAT
Statistics
Matches: 1019, Mismatches: 179, Indels: 130
0.77 0.13 0.10
Matches are distributed among these distances:
246 1 0.00
247 2 0.00
248 85 0.08
249 13 0.01
250 57 0.06
251 29 0.03
252 4 0.00
253 3 0.00
256 1 0.00
257 8 0.01
258 94 0.09
259 345 0.34
260 279 0.27
261 96 0.09
262 2 0.00
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.37
Consensus pattern (259 bp):
TTTCATTATATGATAAGAAATTGACATGTGACCAAATTGACTATTATGCCCTCATATCAATAATT
ACGAAAATACCCATTTCTTTTATAATTATTTACTAAATAATCCCTATGAAATTACCAAAATACCT
TTTCATTATATGATAAAAAATTGACATGTGGCCAAATGGATTATTATACCCTCATACCATAATTA
CAAAAATACACTTTTTCTTATAATTATTTACTAAATAATCCATCTTGAAATTACTAAAATACCA
Found at i:7385334 original size:129 final size:128
Alignment explanation
Indices: 7384884--7385349 Score: 494
Period size: 129 Copynumber: 3.6 Consensus size: 128
7384874 GAAATTAACA
* * * * ** * * *
7384884 TTCCATTATATGATAAGAAAATAACATGGGGCCAAATAAACTATTATACCCTTATATCAT-ATTA
1 TTCCATTATATGATAAGAAGATAGCATGTGACCAAATTGACTATTATGCCTTTATACCATAATTA
* ** ** *
7384948 TGAAAATACCCCTTCAATTATAATTATTTACTAAATAATCCTATATGAATTTACCAAAATACCAT
66 -CAAAATACCATTTCTCTTATAATTATTTACTAAATAATCCTATATGAAATTACCAAAATACC-T
* * *
7385013 TTCCATTACT-TGATAAGAA-ATTGACATGTGGCCAAATTGACTAATATGCCTTTATACCATAAT
1 TTCCATTA-TATGATAAGAAGATAG-CATGTGACCAAATTGACTATTATGCCTTTATACCATAAT
* * * *
7385076 TACAAAAACACTCA-TTCTTTTATAATTATTTACTAAATAATCC-CTATGAAATTACTAAAATAC
64 TAC-AAAATAC-CATTTCTCTTATAATTATTTACTAAATAATCCTATATGAAATTACCAAAATAC
7385139 CT
127 CT
* * * * *
7385141 TTCCATTATATGATAAGAAGTTAACGTGT-AGCCAAATTGACTATTATGTCTTTATACCAAAATT
1 TTCCATTATATGATAAGAAGATAGCATGTGA-CCAAATTGACTATTATGCCTTTATACCATAATT
* * *
7385205 ACAAAATACCATTTCTCTTATAATTATTTATTAAATAATCCTTTATGAAATTACCAAACTACCTT
65 ACAAAATACCATTTCTCTTATAATTATTTACTAAATAATCCTATATGAAATTACCAAAATACC-T
* * * *
7385270 TTACATTATATGATAAGAAGATAGCATATGACTAAATTGACTATTATGCCTTCATACCATAATTA
1 TTCCATTATATGATAAGAAGATAGCATGTGACCAAATTGACTATTATGCCTTTATACCATAATTA
*
7385335 CCAAAATGCCATTTC
66 -CAAAATACCATTTC
7385350 CTTTATATGA
Statistics
Matches: 283, Mismatches: 41, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
126 2 0.01
127 34 0.12
128 74 0.26
129 120 0.42
130 52 0.18
131 1 0.00
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (128 bp):
TTCCATTATATGATAAGAAGATAGCATGTGACCAAATTGACTATTATGCCTTTATACCATAATTA
CAAAATACCATTTCTCTTATAATTATTTACTAAATAATCCTATATGAAATTACCAAAATACCT
Found at i:7385356 original size:77 final size:76
Alignment explanation
Indices: 7385275--7385417 Score: 182
Period size: 77 Copynumber: 1.9 Consensus size: 76
7385265 ACCTTTTACA
* * * *
7385275 TTATATGATAAGAAGA-TAGCATAT-GACTAAATTGACTATTATGCCTTCATACCATAATTACCA
1 TTATATGATAAGAA-ATTAACATATAG-CCAAATGGACTATTATGCC-TCATACCATAATTACAA
7385338 AAATGCCATTTCCT
63 AAATGCCATTTCCT
* * *
7385352 TTATATGATAGGAAATTAACATATAGCCAAATGGACTATTATGCCTCATACTATAGTTACAAAAA
1 TTATATGATAAGAAATTAACATATAGCCAAATGGACTATTATGCCTCATACCATAATTACAAAAA
7385417 T
66 T
7385418 ATCCCTTCTC
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
76 19 0.33
77 37 0.65
78 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33
Consensus pattern (76 bp):
TTATATGATAAGAAATTAACATATAGCCAAATGGACTATTATGCCTCATACCATAATTACAAAAA
TGCCATTTCCT
Found at i:7385523 original size:206 final size:204
Alignment explanation
Indices: 7385125--7385539 Score: 480
Period size: 206 Copynumber: 2.0 Consensus size: 204
7385115 ATCCCTATGA
* * * * *
7385125 AATTACTAAAATACCTTTCCATTATATGATAAGAAGTTAACGTGTAGCCAAATTGACTATTATGT
1 AATTACCAAAATACCTTTCCATTATATGATAAGAAATTAACATATAGCCAAATGGACTATTATGT
* * * * *
7385190 CTTTATACCAAAATTACAAAATACCATTTCTCTTATAATTATTTATTAAATAATCCTTTATGAAA
66 CCTCATACCAAAATTACAAAATACCACTTCTCTTATAATTATTTACTAAATAATCCTCTATGAAA
* * * * *
7385255 TTACCAAACTACCTTTTACATTATATGATAAGAAGATAGCATATGACTAAATTGACTATTATGCC
131 TTACAAAACTACCTTTTAAATTATATGATAAGAAAATAGCATATGACCAAATAGACTATTATG-C
*
7385320 TTCATACCAT
195 TGCATACCAT
* * *
7385330 AATTACCAAAATGCCATTTCCTTTATATGATAGGAAATTAACATATAGCCAAATGGACTATTATG
1 AATTACCAAAATACC-TTTCCATTATATGATAAGAAATTAACATATAGCCAAATGGACTATTATG
* * *
7385395 -CCTCATACTATAGTTACAAAAATATCC-CTTCTCTTATAATTATTTACTAAATAAT-CTCCTAT
65 TCCTCATACCAAAATTAC-AAAATA-CCACTTCTCTTATAATTATTTACTAAATAATCCT-CTAT
* * * * * *
7385457 GATATTACTAAAATTTCC-TTTAAATTATATGATAA-AAAATTGACATATGGCCAAATAGATTAT
127 GAAATTAC-AAAACTACCTTTTAAATTATATGATAAGAAAATAG-CATATGACCAAATAGACTAT
7385520 TATGCTGCATACCAT
190 TATGCTGCATACCAT
7385535 AATTA
1 AATTA
7385540 GGAAATTATC
Statistics
Matches: 176, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
205 47 0.27
206 121 0.69
207 8 0.05
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (204 bp):
AATTACCAAAATACCTTTCCATTATATGATAAGAAATTAACATATAGCCAAATGGACTATTATGT
CCTCATACCAAAATTACAAAATACCACTTCTCTTATAATTATTTACTAAATAATCCTCTATGAAA
TTACAAAACTACCTTTTAAATTATATGATAAGAAAATAGCATATGACCAAATAGACTATTATGCT
GCATACCAT
Found at i:7385610 original size:334 final size:332
Alignment explanation
Indices: 7384998--7385618 Score: 770
Period size: 334 Copynumber: 1.9 Consensus size: 332
7384988 CTATATGAAT
* * * *
7384998 TTACCAAAATACCATTTCCATTACTTGATAAGAAATTGACATGTGGCCAAATTGACTAATATGCC
1 TTACCAAAATACCATTTCCATTACTTGATAAGAAATTAACATATAGCCAAATGGACTAATATGCC
* *
7385063 TTTATACCATAATTACAAAAACACTCATTCTTTTATAATTATTTACTAAATAATCCCTATGAAAT
66 TTCATACCATAATTACAAAAACACTCATTCTCTTATAATTATTTACTAAATAATCCCTATGAAAT
** * * * * * *
7385128 TACTAAAATACCTTTCCATTATATGATAAGAAGTTAACGTGTAGCCAAATTGACTATTATGTCTT
131 TACTAAAATACCTTTAAATTATATGATAAAAAATTAACATATAGCCAAATAGACTATTATGTCTG
* * *
7385193 TATACCAAAATTACAAAATACCATTTCTCTTATAATTATTTATTAAATAATCCTTTATGAAATTA
196 CATACCAAAATTACAAAATACCA-TTCTCTTATAATTATTTACTAAATAATCCTCTATGAAATTA
7385258 CCAAACTACCTTTTACATTATATGATAAGAAGATAGCATATGACTAAATTGACTATTATGCCTTC
260 CCAAACTACC-TTTACATTATATGATAAGAAGATAGCATATGACTAAATTGACTATTATGCCTTC
7385323 ATACCATAA
324 ATACCATAA
* * * *
7385332 TTACCAAAATGCCATTTCCTTTA-TATGATAGGAAATTAACATATAGCCAAATGGACTATTATGC
1 TTACCAAAATACCATTTCCATTACT-TGATAAGAAATTAACATATAGCCAAATGGACTAATATGC
* * * *
7385396 C-TCATACTATAGTTACAAAAATA-TCCCTTCTCTTATAATTATTTACTAAATAATCTCCTATGA
65 CTTCATACCATAATTACAAAAACACT-CATTCTCTTATAATTATTTACTAAATAATC-CCTATGA
* * * * *
7385459 TATTACTAAAATTTCCTTTAAATTATATGATAAAAAATTGACATATGGCCAAATAGATTATTATG
128 AATTACTAAAA-TACCTTTAAATTATATGATAAAAAATTAACATATAGCCAAATAGACTATTATG
* * * * *
7385524 -CTGCATACCATAATTAGGAAATTATCC-TTCTTTTATAATTATTTACTAAATATTCAC-CTATG
192 TCTGCATACCAAAATTA-CAAAATA-CCATTCTCTTATAATTATTTACTAAATAATC-CTCTATG
*
7385586 AAATTACCGAAATCTGCC-TTACATTATATGATA
254 AAATTACC-AAA-CTACCTTTACATTATATGATA
7385619 CATAATTGAC
Statistics
Matches: 242, Mismatches: 36, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
332 1 0.00
333 47 0.19
334 137 0.57
335 51 0.21
336 6 0.02
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.37
Consensus pattern (332 bp):
TTACCAAAATACCATTTCCATTACTTGATAAGAAATTAACATATAGCCAAATGGACTAATATGCC
TTCATACCATAATTACAAAAACACTCATTCTCTTATAATTATTTACTAAATAATCCCTATGAAAT
TACTAAAATACCTTTAAATTATATGATAAAAAATTAACATATAGCCAAATAGACTATTATGTCTG
CATACCAAAATTACAAAATACCATTCTCTTATAATTATTTACTAAATAATCCTCTATGAAATTAC
CAAACTACCTTTACATTATATGATAAGAAGATAGCATATGACTAAATTGACTATTATGCCTTCAT
ACCATAA
Found at i:7385758 original size:129 final size:128
Alignment explanation
Indices: 7385330--7386653 Score: 921
Period size: 129 Copynumber: 10.2 Consensus size: 128
7385320 TTCATACCAT
* * * * * *
7385330 AATTACCAAAATGCCATTTCCTTTATATGATAGGAAATTAACATATAGCCAAATGGACTATTATG
1 AATTACCAAAATGCC-TTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATG
* * ** *
7385395 -CCTCATACTATAGTTACAAAAATATCCCTTCTCTTATAATTATTTACTAAATAATCTCCTATGA
65 CCCTCATACCATAATTATGAAAATATCCATTCTCTTATAATTATTTACTAAATAATC-CCTATGA
* * * ** * * * *
7385459 TATTACTAAAATTTCCTTTAAATTATATGATAAAAAATTGACATATGGCCAAATAGATTATTATG
1 AATTACCAAAA-TGCCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATG
* * * *
7385524 --CTGCATACCATAATTAGGAAATTATCC-TTCTTTTATAATTATTTACTAAATATTCACCTATG
65 CCCT-CATACCATAATTATGAAAATATCCATTCTCTTATAATTATTTACTAAATAATC-CCTATG
7385586 A
128 A
* * * *
7385587 AATTACCGAAATCTGCC-TTACATTATATGATACA-TAATTGACATTTGGCCAAATGGACTATTA
1 AATTACC-AAA-ATGCCTTTTCATTATATGATA-AGAAATTGACATGTGGCCAAATGGACTATTA
* *
7385650 TGCCCTCATACCTTAATTATGAAAATA-CACATTCTCTTGTAATTATTTACTAAATAATCCCTAA
63 TGCCCTCATACCATAATTATGAAAATATC-CATTCTCTTATAATTATTTACTAAATAATCCCT-A
7385714 TGA
126 TGA
* ** *
7385717 AATTACCAAAATGCCTTTTAATTATATGATAAGAAATTGACATGTCACCAAATGGACTATTTTGC
1 AATTACCAAAATGCCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGC
* * * * *
7385782 CTTCAAATCATAATTATGAAAATATCCATTTTCTTATAATTA-TTATTAAATAATCCCCTATGA
66 CCTCATACCATAATTATGAAAATATCCATTCTCTTATAATTATTTACTAAATAAT-CCCTATGA
* * **
7385845 AATTACAAAAATACCTTTTCCATTATATGATAAGAAATTGACATGTTACCAAATGGACTATTAT-
1 AATTACCAAAATGCCTTTT-CATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATG
* ** * * ** *
7385909 CCCTCATATCATAATTACAAAAATA-CTTATTCTTTTTATAATTATTTAGAAAATAATCACGTAT
65 CCCTCATACCATAATTATGAAAATATC-CATTC-TCTTATAATTATTTACTAAATAATC-CCTAT
*
7385973 AA
127 GA
* * ** * * * ** *
7385975 AATTATCAAAACATG--TTTTCCATTAAATGGCAAG-AATTGATAAGTGGCCAAAAGGAAAATTT
1 AATTA-CCAAA-ATGCCTTTT-CATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTA
* * * * * * * * * * * **
7386037 TTCCTTCTTATCATAATTATAAAAATACCCCTTCTTTTATAA-CAATTA-TGAGATAATCTTTAA
63 TGCCCTCATACCATAATTATGAAAATATCCATTCTCTTATAATTATTTACT-AAATAATCCCT-A
*
7386100 TTA
126 TGA
* * * * * * ** * *
7386103 AATTACAAAAATATCATTTCCATTATATGATAAGAAGTTAACATGTTACCAAATTGACTATCATG
1 AATTACCAAAAT-GCCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATG
** * * * * * *
7386168 CTTTCATACCTTAATTATGAAAAGTATCCCTTTTTTTGTAATTATTTACTAAATAATCCCCTAGG
65 CCCTCATACCATAATTATGAAAA-TATCCATTCTCTTATAATTATTTACTAAATAAT-CCCTATG
7386233 A
128 A
* * * * *
7386234 AATTACCAAAATGCCTTTTTCATTGTATGATAAGAAATTTACATTTTGTCCAAATTGACTATTAT
1 AATTACCAAAATGCC-TTTTCATTATATGATAAGAAATTGACA-TGTGGCCAAATGGACTATTAT
** * * ** *
7386299 GCCCTCATATTATAATTACGAAAATA-CCATT-TCCTTTATAATTATTTACTAAATATTCTTTTG
64 GCCCTCATACCATAATTATGAAAATATCCATTCT-C-TTATAATTATTTACTAAATAATC-CCTA
7386362 TGA
126 TGA
* * * * * * *
7386365 AATTATCAAAATACCCTTTACATTACATCATAAGAAATT-ATCACGTGGCC-AATGAGACTATTC
1 AATTACCAAAAT-GCCTTTTCATTATATGATAAGAAATTGA-CATGTGGCCAAATG-GACTATTA
* * * * * * * *
7386428 TTCACTTATACCACAATTATGAAAA-AGCCTTATCTCTTATAATTA-TAACTAAATAATCCTTTA
63 TGCCCTCATACCATAATTATGAAAATATCCAT-TCTCTTATAATTATTTACTAAATAATCC-CTA
*
7386491 TTA
126 TGA
* * * * ** *
7386494 AATTACCAATATACCTTTTTTATTATATGATAAAAAATTGACATGTGGTTAAATCGACTATTATG
1 AATTACCAAAATGCC-TTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATG
* * * * *
7386559 CCTTCATACC-TAATTACGAAAATATACATTCTTTTATAATTATTTACTAAATAATGCCTTATGA
65 CCCTCATACCATAATTATGAAAATATCCATTCTCTTATAATTATTTACTAAATAAT-CCCTATGA
* * * *
7386623 GATTACAAAAATACCATTTCCATTA-ATGATA
1 AATTACCAAAATGCC-TTTTCATTATATGATA
7386654 TACAATAAAA
Statistics
Matches: 941, Mismatches: 203, Indels: 103
0.75 0.16 0.08
Matches are distributed among these distances:
126 2 0.00
127 7 0.01
128 203 0.22
129 404 0.43
130 171 0.18
131 111 0.12
132 43 0.05
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.38
Consensus pattern (128 bp):
AATTACCAAAATGCCTTTTCATTATATGATAAGAAATTGACATGTGGCCAAATGGACTATTATGC
CCTCATACCATAATTATGAAAATATCCATTCTCTTATAATTATTTACTAAATAATCCCTATGA
Found at i:7385777 original size:463 final size:463
Alignment explanation
Indices: 7384950--7385797 Score: 1061
Period size: 463 Copynumber: 1.8 Consensus size: 463
7384940 TCATATTATG
7384950 AAAATACCCCTTCAATTATAATTATTTACTAAATAATCCTATATGAATTTACCAAAATACCATTT
1 AAAATACCCCTTCAATTATAATTATTTACTAAATAATCCTATATGAATTTACCAAAATACCATTT
** * * * **
7385015 CCATTACTTGATAAGAAATTGACATGTGGCCAAATTGACTAATATGCCTTTATACCATAATTACA
66 AAATTACTTGATAAAAAATTGACATATGGCCAAATAGACTAATATGCCTGCATACCATAATTACA
* * *
7385080 AAAACACTCATTCTTTTATAATTATTTACTAAATAATCCCTATGAAATTACTAAAATACCTTTCC
131 AAAACACTCATTCTTTTATAATTATTTACTAAATAATCCCTATGAAATTACCAAAATACCCTTAC
* * * * *
7385145 ATTATATGATAAGAAGTTAACGTGTAGCCAAATTGACTATTATGTCTTTATACCAAAATTACAAA
196 ATTATATGATAAGAAGTTAACATGTAGCCAAATGGACTATTATGCCCTCATACCAAAATTACAAA
* * * *
7385210 ATACCATTTCTCTTATAATTATTTATTAAATAATCCTTTATGAAATTACCAAACTACCTTTTACA
261 ATACCATTTCTCTTATAATTATTTACTAAATAATCCCTAATGAAATTACCAAAATACCTTTTACA
* * * *
7385275 TTATATGATAAGAAGATAGCATATGACTAAATTGACTATTATGCCTTCATACCATAATTACCAAA
326 TTATATGATAAGAAGATAGCATATCACCAAATGGACTATTATGCCTTCAAACCATAATTACCAAA
7385340 ATGCCATTTCCTTTATATGATAGGAAATTAACATATAGCCAAATGGACTATTATGCCTCATACTA
391 ATGCCATTTCCTTTATATGATAGGAAATTAACATATAGCCAAATGGACTATTATGCCTCATACTA
7385405 TAGTTACA
456 TAGTTACA
* ** * * *
7385413 AAAATATCCCTTCTCTTATAATTATTTACTAAATAAT-CTCCTATG-ATATTACTAAAATTTCC-
1 AAAATACCCCTTCAATTATAATTATTTACTAAATAATCCT-ATATGAAT-TTACCAAAA-TACCA
* *
7385475 TTTAAATTA-TATGATAAAAAATTGACATATGGCCAAATAGATTATTATG-CTGCATACCATAAT
63 TTTAAATTACT-TGATAAAAAATTGACATATGGCCAAATAGACTAATATGCCTGCATACCATAAT
** ** * * *
7385538 TAGGAAATTA-TCCTTCTTTTATAATTATTTACTAAATATTCACCTATGAAATTACCGAAAT-CT
127 TACAAAAACACTCATTCTTTTATAATTATTTACTAAATAATC-CCTATGAAATTACCAAAATAC-
* * * * **
7385601 GCCTTACATTATATGATACATAA-TTGACATTTGGCCAAATGGACTATTATGCCCTCATACCTTA
190 -CCTTACATTATATGATA-AGAAGTTAACATGTAGCCAAATGGACTATTATGCCCTCATACCAAA
* *
7385665 ATTATGAAAATACACA-TTCTCTTGTAATTATTTACTAAATAATCCCTAATGAAATTACCAAAAT
253 ATTA-CAAAATAC-CATTTCTCTTATAATTATTTACTAAATAATCCCTAATGAAATTACCAAAAT
* * * * *
7385729 GCCTTTTA-ATTATATGATAAGAA-ATTGACATGTCACCAAATGGACTATTTTGCCTTCAAATCA
316 ACCTTTTACATTATATGATAAGAAGATAG-CATATCACCAAATGGACTATTATGCCTTCAAACCA
7385792 TAATTA
380 TAATTA
7385798 TGAAAATATC
Statistics
Matches: 323, Mismatches: 51, Indels: 22
0.82 0.13 0.06
Matches are distributed among these distances:
461 30 0.09
462 43 0.13
463 185 0.57
464 63 0.20
465 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.37
Consensus pattern (463 bp):
AAAATACCCCTTCAATTATAATTATTTACTAAATAATCCTATATGAATTTACCAAAATACCATTT
AAATTACTTGATAAAAAATTGACATATGGCCAAATAGACTAATATGCCTGCATACCATAATTACA
AAAACACTCATTCTTTTATAATTATTTACTAAATAATCCCTATGAAATTACCAAAATACCCTTAC
ATTATATGATAAGAAGTTAACATGTAGCCAAATGGACTATTATGCCCTCATACCAAAATTACAAA
ATACCATTTCTCTTATAATTATTTACTAAATAATCCCTAATGAAATTACCAAAATACCTTTTACA
TTATATGATAAGAAGATAGCATATCACCAAATGGACTATTATGCCTTCAAACCATAATTACCAAA
ATGCCATTTCCTTTATATGATAGGAAATTAACATATAGCCAAATGGACTATTATGCCTCATACTA
TAGTTACA
Found at i:7387165 original size:127 final size:128
Alignment explanation
Indices: 7386969--7387331 Score: 400
Period size: 127 Copynumber: 2.8 Consensus size: 128
7386959 TATGATATCC
* * * *
7386969 CATATCATAATTACGAAAATACCCATTCTCTTACAATTATTT-CTAAATAATCGA--TAGGCAAT
1 CATACCATAATTACG-AAATACCC-TTCTCTTATAATTATTTACTAAATAATC-ACCTATGAAAT
* *
7387031 TATCAAAATATCCTTTCCATTATTTGATAAGAAATTGACATGTGGCC-AAATGGACTAAT-ATGC
63 TACCAAAATA-CCTTTCCATTATATGATAAGAAATTGACATGTGGCCTAAATGGACT-ATCATGC
7387094 CCA
126 CCA
*
7387097 CATACCATAATTACGAAATACCCTTCTCTTATAATT-TTTACTAAATATTCACCTATGAAATTAC
1 CATACCATAATTACGAAATACCCTTCTCTTATAATTATTTACTAAATAATCACCTATGAAATTAC
* * ** ** *
7387161 CAAAATACACATTACATTATATGATAAGAAATTGACAT-TTTCCTAAATGGACTATCATGTGCT
66 CAAAATAC-CTTTCCATTATATGATAAGAAATTGACATGTGGCCTAAATGGACTATCATGCCCA
** * * *
7387224 CATACCATAATTACGAATATATCTTTTTTCTTATAATTATTTACTAAACAATC-CCTTATAAAAT
1 CATACCATAATTACGAA-ATA-CCCTTCTCTTATAATTATTTACTAAATAATCACC-TATGAAAT
*
7387288 TACCAAAATACCATTTCCATTATATGATAAGAAATTGATATGTG
63 TACCAAAATACC-TTTCCATTATATGATAAGAAATTGACATGTG
7387332 ATCAAATAGA
Statistics
Matches: 199, Mismatches: 24, Indels: 21
0.82 0.10 0.09
Matches are distributed among these distances:
125 4 0.02
126 27 0.14
127 79 0.40
128 17 0.09
129 16 0.08
130 55 0.28
131 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.36
Consensus pattern (128 bp):
CATACCATAATTACGAAATACCCTTCTCTTATAATTATTTACTAAATAATCACCTATGAAATTAC
CAAAATACCTTTCCATTATATGATAAGAAATTGACATGTGGCCTAAATGGACTATCATGCCCA
Found at i:7388362 original size:112 final size:108
Alignment explanation
Indices: 7388161--7388368 Score: 272
Period size: 112 Copynumber: 1.9 Consensus size: 108
7388151 TTTTCTAGGT
* * *
7388161 GATTATTTAGCAAATAATTATAAGAGAAGTACTTTCCTAATTATGGTATGAAGTATAATAGTCCA
1 GATTATTTAGCAAATAATTATAAGAGAAGTACTTTCATAATTACGGTATGAAGCATAATAGTCCA
* *
7388226 TTTGGCAATATGTTAATTACTTATCATATAACGGAAATGGAGG
66 TTTGGCAACATGTCAATTACTTATCATATAACGGAAATGGAGG
* * * **
7388269 GATTATTTAGTAAATTATTATAAGAGAAGGTGTATTTTCATAATTACGGTATGGGGGCATAATAG
1 GATTATTTAGCAAATAATTATAAGAGAA---GTACTTTCATAATTACGGTAT-GAAGCATAATAG
* *
7388334 TCCATTTGGCTACATGTCAATTTCTTATCATATAA
62 TCCATTTGGCAACATGTCAATTACTTATCATATAA
7388369 TGGGGAGGGC
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
108 26 0.31
111 18 0.21
112 40 0.48
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.37
Consensus pattern (108 bp):
GATTATTTAGCAAATAATTATAAGAGAAGTACTTTCATAATTACGGTATGAAGCATAATAGTCCA
TTTGGCAACATGTCAATTACTTATCATATAACGGAAATGGAGG
Found at i:7388590 original size:131 final size:130
Alignment explanation
Indices: 7388414--7388695 Score: 318
Period size: 130 Copynumber: 2.2 Consensus size: 130
7388404 TTTAATATTT
* * *
7388414 GATTATTTAGT-AATAATTATAAAAGAAGTGGTATTTTTGTAATTATGGTATAAAAG-AGTAGTA
1 GATTATTTAGTAAATAATTATAAAAGAAGTGGCATTTTCGTAATTATGGTATAAAAGCA-TAATA
* * * * * *
7388477 GTCCAATAGCCATATATATAAATTTCTTATTATGTAATGGAAAGGGTACTTTGATAATTTCATAA
65 GTCCAATAG-CATACACATAAATTTCTTATCATATAATGGAAAAGGTACTTTGATAATTTCAAAA
7388542 GG
129 GG
* * * * *
7388544 GATTATATAGTAAATAATTATAAGAGAA-TGTGCATTTTCGTTATTATGGTATGAAGGCATAATA
1 GATTATTTAGTAAATAATTATAAAAGAAGTG-GCATTTTCGTAATTATGGTATAAAAGCATAATA
* * ** * * *
7388608 GTCCATTTGGTTACACATCAATTTCTTATCATATAATGGAAAAGGTATTTTGATAATTTCAAAAT
65 GTCCAATAGCATACACATAAATTTCTTATCATATAATGGAAAAGGTACTTTGATAATTTCAAAAG
7388673 G
130 G
*
7388674 AATTATTTAGTAAATAATTATA
1 GATTATTTAGTAAATAATTATA
7388696 GGAAAAACGT
Statistics
Matches: 126, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
130 78 0.62
131 47 0.37
132 1 0.01
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (130 bp):
GATTATTTAGTAAATAATTATAAAAGAAGTGGCATTTTCGTAATTATGGTATAAAAGCATAATAG
TCCAATAGCATACACATAAATTTCTTATCATATAATGGAAAAGGTACTTTGATAATTTCAAAAGG
Found at i:7391361 original size:20 final size:19
Alignment explanation
Indices: 7391338--7391386 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
7391328 AAATTTTGTG
7391338 TAATTTTGACTTTATTTGAC
1 TAATTTTGACTTTA-TTGAC
*
7391358 TAATTTTAACTTTATTGAC
1 TAATTTTGACTTTATTGAC
* *
7391377 CAAGTTTGAC
1 TAATTTTGAC
7391387 CCGAGTTGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.49
Consensus pattern (19 bp):
TAATTTTGACTTTATTGAC
Found at i:7391731 original size:5 final size:5
Alignment explanation
Indices: 7391674--7391759 Score: 54
Period size: 5 Copynumber: 17.0 Consensus size: 5
7391664 TCCTTCCTTT
* *
7391674 TTTTG -TTTG TTTTGG TTTTA TTGTTG CTTTG TTGTTG TTGTTG -TTT-
1 TTTTG TTTTG TTTT-G TTTTG TT-TTG TTTTG TT-TTG TT-TTG TTTTG
* * *
7391720 ATTTG TTTTG TTTTTG TTTTC ATTT- TTTTG TTTTG TTTTG
1 TTTTG TTTTG -TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG
7391760 GAAAATAAAG
Statistics
Matches: 65, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
4 12 0.18
5 31 0.48
6 22 0.34
ACGTcount: A:0.03, C:0.02, G:0.20, T:0.74
Consensus pattern (5 bp):
TTTTG
Found at i:7391757 original size:25 final size:24
Alignment explanation
Indices: 7391671--7391758 Score: 83
Period size: 25 Copynumber: 3.7 Consensus size: 24
7391661 CCCTCCTTCC
*
7391671 TTTTTTTG-TTTGTTTTGGTTTTA
1 TTTTTTTGTTTTGTTTTTGTTTTA
* * * *
7391694 --TTGTTGCTTTGTTGTTGTTGTTG
1 TTTTTTTGTTTTGTTTTTGTT-TTA
*
7391717 TTTATTTGTTTTGTTTTTGTTTTCA
1 TTTTTTTGTTTTGTTTTTGTTTT-A
7391742 TTTTTTTGTTTTGTTTT
1 TTTTTTTGTTTTGTTTT
7391759 GGAAAATAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
21 5 0.10
22 10 0.20
23 2 0.04
24 2 0.04
25 31 0.62
ACGTcount: A:0.03, C:0.02, G:0.18, T:0.76
Consensus pattern (24 bp):
TTTTTTTGTTTTGTTTTTGTTTTA
Found at i:7391758 original size:19 final size:20
Alignment explanation
Indices: 7391679--7391758 Score: 69
Period size: 20 Copynumber: 3.9 Consensus size: 20
7391669 CCTTTTTTTG
*
7391679 TTTGTTTTGGTTTTATTGTTGC-
1 TTTGTTTT-GTTTTGTT-TT-CA
7391701 TTTGTTGTTGTTGTTG-TTT-A
1 TTTGTT-TTGTT-TTGTTTTCA
7391721 TTTGTTTTGTTTTTGTTTTCA
1 TTTGTTTTG-TTTTGTTTTCA
7391742 TTT-TTTTGTTTTGTTTT
1 TTTGTTTTGTTTTGTTTT
7391759 GGAAAATAAA
Statistics
Matches: 51, Mismatches: 1, Indels: 15
0.76 0.01 0.22
Matches are distributed among these distances:
19 15 0.29
20 16 0.31
21 6 0.12
22 10 0.20
23 4 0.08
ACGTcount: A:0.04, C:0.03, G:0.19, T:0.75
Consensus pattern (20 bp):
TTTGTTTTGTTTTGTTTTCA
Found at i:7391985 original size:72 final size:72
Alignment explanation
Indices: 7391903--7392039 Score: 177
Period size: 72 Copynumber: 1.9 Consensus size: 72
7391893 ATCGTAGGTC
* * * * * * * *
7391903 AGAAAAATAAAGATGATTGGGATAATACTAATAGTTGAAAAAA-CAATATGATCAGGACAACACC
1 AGAAAAATAAAAATGATAGGGACAATA-TAATAGGTCAAAAAATAAATATGACCAAGACAACACC
7391967 AAATTGTT
65 AAATTGTT
*
7391975 AGAAAAATAAAAATGATAGGGACAATATTATAGGTCAAAAAATAAATATGACCAAGACAACACCA
1 AGAAAAATAAAAATGATAGGGACAATATAATAGGTCAAAAAATAAATATGACCAAGACAACACCA
7392040 TAAGTCAAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
71 12 0.22
72 43 0.78
ACGTcount: A:0.53, C:0.11, G:0.15, T:0.20
Consensus pattern (72 bp):
AGAAAAATAAAAATGATAGGGACAATATAATAGGTCAAAAAATAAATATGACCAAGACAACACCA
AATTGTT
Found at i:7392200 original size:35 final size:35
Alignment explanation
Indices: 7392124--7392216 Score: 109
Period size: 35 Copynumber: 2.7 Consensus size: 35
7392114 ATTCAAAAAA
* * *
7392124 TAAAGATGATTGAGATAACACCAATAGTTGAGAAG
1 TAAAGATGATCGAGACAACACCAAGAGTTGAGAAG
* *
7392159 -ATAAGATGATCGAGACAACACCAAGGGTTGGGAAG
1 TA-AAGATGATCGAGACAACACCAAGAGTTGAGAAG
7392194 TAAAGATGATC-AGGACAACACCA
1 TAAAGATGATCGA-GACAACACCA
7392217 GCATTTAAGA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
34 2 0.04
35 47 0.94
36 1 0.02
ACGTcount: A:0.44, C:0.14, G:0.25, T:0.17
Consensus pattern (35 bp):
TAAAGATGATCGAGACAACACCAAGAGTTGAGAAG
Found at i:7392774 original size:28 final size:26
Alignment explanation
Indices: 7392742--7392814 Score: 74
Period size: 28 Copynumber: 2.7 Consensus size: 26
7392732 TATGATGCAG
*
7392742 ATGATGTAAATGGAAATGTCTTTTGTGA
1 ATGATGTAAATGCAAATGTCTTTT-T-A
* * * *
7392770 ATGATGCAATTACAAATGTCTTTTTC
1 ATGATGTAAATGCAAATGTCTTTTTA
*
7392796 ATGATGTAGATGCAAATGT
1 ATGATGTAAATGCAAATGT
7392815 GAATATCTTT
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
26 15 0.42
27 1 0.03
28 20 0.56
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (26 bp):
ATGATGTAAATGCAAATGTCTTTTTA
Found at i:7402027 original size:128 final size:131
Alignment explanation
Indices: 7401798--7402119 Score: 316
Period size: 129 Copynumber: 2.5 Consensus size: 131
7401788 TGTTTATAAC
* * * * * **
7401798 TATTAT-CCCTCGTATCATCATTACGAAAATACTCATTCT-CTTATAATAATTTAGAAAATAAT-
1 TATTATGCCCTCATACCATAATTACAAAAATACCCATTCTACTTATAATAATTTACTAAATAATC
* * * * * * *
7401860 ATTGTATGAAATTACCAAAATACGCTTTCCATTACATGATAAGAA-TTGACAAATGGCTAAAAGG
66 CTTAT-TTAGATTACCAAAATACGCTTTCCATTAAATGATAAGAAGTTAACAAATCGCTAAAAGG
7401924 AA
130 AA
* ** * *
7401926 TATTATTCCCTCATACCATAATTATGAAAGTGCCCATTCT-CTTATAATAA-TTACTAAATAATC
1 TATTATGCCCTCATACCATAATTACAAAAATACCCATTCTACTTATAATAATTTACTAAATAATC
* * * **
7401989 CTTATTTAGATTACTAAAATAC-CTTTTTCATTAAATGATAAGAAGTTAACATATCGCTAAATTG
66 CTTATTTAGATTACCAAAATACGC-TTTCCATTAAATGATAAGAAGTTAACAAATCGCTAAAAGG
*
7402053 AT
130 AA
* * * *
7402055 TATTATGCCTTCATACCATAATTACAAAAATACCCCTTTTATTTATAATAATTTACTAAATAATC
1 TATTATGCCCTCATACCATAATTACAAAAATACCCATTCTACTTATAATAATTTACTAAATAATC
7402120 TCCTAAGAAA
Statistics
Matches: 157, Mismatches: 31, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
127 1 0.01
128 48 0.31
129 86 0.55
130 9 0.06
131 13 0.08
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.37
Consensus pattern (131 bp):
TATTATGCCCTCATACCATAATTACAAAAATACCCATTCTACTTATAATAATTTACTAAATAATC
CTTATTTAGATTACCAAAATACGCTTTCCATTAAATGATAAGAAGTTAACAAATCGCTAAAAGGA
A
Found at i:7402498 original size:130 final size:127
Alignment explanation
Indices: 7401798--7402527 Score: 447
Period size: 130 Copynumber: 5.7 Consensus size: 127
7401788 TGTTTATAAC
* * * * * * ** *
7401798 TATTATCCCTCGTATCATCATTACGAAAATACTCATTCTCTTATAATAATTTAGAAAATAATATT
1 TATTATTCCTCATACCATAATTACGAAAATACACATTCTCTTATAATTATTTACTAAATAATCTT
** * * * * *
7401863 GTATGAAATTACCAAAATACGCTTTCCATTACATGATAAG-AATTGACAAATGGCTAAAAGGAA
66 -TATGAAATTACCAAAATACATTTTCCATTATATGATAAGAAATTAACATAT-GCTAAATGGAT
* * * * * *
7401926 TATTATTCCCTCATACCATAATTATGAAAGTGCCCATTCTCTTATAA-TAATTACTAAATAATCC
1 TATTATT-CCTCATACCATAATTACGAAAATACACATTCTCTTATAATTATTTACTAAATAATCT
* * * * * * * *
7401990 TTATTTAGATTACTAAAATACCTTTTTCATTAAATGATAAGAAGTTAACATATCGCTAAATTGAT
65 TTA-TGAAATTACCAAAATACATTTTCCATTATATGATAAGAAATTAACATAT-GCTAAATGGAT
* * * * * * *
7402055 TATTATGCCTTCATACCATAATTACAAAAATACCCCTTTTATTTATAATAATTTACTAAATAATC
1 TATTATTCC-TCATACCATAATTACGAAAATACACATTCT-CTTATAATTATTTACTAAATAATC
* * * * * * * * * *
7402120 TCCTAAGAAATTACCAAAATATCA-TTTCCAATGTATGATATGAAATTTATATTTGTCCAAATTG
64 T-TTATGAAATTACCAAAATA-CATTTTCCATTATATGATAAGAAATTAACATATG-CTAAATGG
7402184 AT
126 AT
* * * * * * *
7402186 TGTTACGTT-CTCATATCATAATTA-TAAAA-ATAC-TTCTCTTATAATTATGTACTAAATATTT
1 TATTA--TTCCTCATACCATAATTACGAAAATACACATTCTCTTATAATTATTTACTAAATAATC
* * * * * * * * * *
7402247 TCTTGTAAAATTATCAAAATATC-TTTTACATTATATCATAAAAAATTATCATGTGGC-CAATAA
64 T-TTATGAAATTACCAAAATA-CATTTTCCATTATATGATAAGAAATTAACATAT-GCTAAAT-G
*
7402310 GAC
125 GAT
* * * * * *
7402313 TATTCTTTCCTCATACCACAATTATGAAAAAATC-CCTATCTTTTATAATTA-TTACTAAATAAT
1 TATT-ATTCCTCATACCATAATTACGAAAATA-CACAT-TCTCTTATAATTATTTACTAAATAAT
* * * * *
7402376 CCTTTATTAAATTAGCAAAATACATTTTCTATTATATGATAAGAAGTTAACATATAGTTAAATGG
63 -CTTTATGAAATTACCAAAATACATTTTCCATTATATGATAAGAAATTAACATAT-GCTAAATGG
7402441 AT
126 AT
* * * *
7402443 TTTTATTCCTTCATACCGTAATTACGAAAATACACATTCTCTTATATTTATTTACTAAATAGTCT
1 TATTATTCC-TCATACCATAATTACGAAAATACACATTCTCTTATAATTATTTACTAAATAATCT
*
7402508 CTTATAAAATTACCAAAATA
65 -TTATGAAATTACCAAAATA
7402528 GCCTTTTTCA
Statistics
Matches: 452, Mismatches: 122, Indels: 54
0.72 0.19 0.09
Matches are distributed among these distances:
126 5 0.01
127 78 0.17
128 58 0.13
129 101 0.22
130 116 0.26
131 89 0.20
132 4 0.01
133 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (127 bp):
TATTATTCCTCATACCATAATTACGAAAATACACATTCTCTTATAATTATTTACTAAATAATCTT
TATGAAATTACCAAAATACATTTTCCATTATATGATAAGAAATTAACATATGCTAAATGGAT
Found at i:7403159 original size:129 final size:126
Alignment explanation
Indices: 7402699--7404015 Score: 617
Period size: 129 Copynumber: 10.3 Consensus size: 126
7402689 ATTTTTTAAA
* * * * * * * * *
7402699 AAATTATAAAAACACCTTTCCATTATATGATAA-AAATTAACATGTAGCCAAATTGACTATTA-G
1 AAATTATCAAAATACCTTT-CATTATATGATAAGAAATTGATATATGGCTAAATGGACTACTATG
* * * * * * * *
7402762 AACTAAATATCATATTTACGAAAATACTGACTT-TCTTAAAATTATTTGCTAAATAATCCCTCAT
65 -CCTACATACCATAATTACGAAAATA-T-CCTTCTCTTATAATTATTTACTAAATATTCCCT-AT
*
7402826 A
126 G
* * * * * * *
7402827 AAATTATCAAAATACTTTTTTTTATTTTATGATAAGAAATTGACT-TGTGGCCAAATGAACTATT
1 AAATTATCAAAATAC---CTTTCATTATATGATAAGAAATTGA-TATATGGCTAAATGGACTACT
* * * * * * **
7402891 TTGTCT-CTATATCATAATTATGAAAATACCCCTTCTCTTACAATTATTTA-TAAATTATTCAAT
62 ATGCCTAC-ATACCATAATTACGAAAATA-TCCTTCTCTTATAATTATTTACTAAA-TATTCCCT
*
7402954 AAG
124 ATG
* *
7402957 AAATTATCAAAATACCCTTTTCATTATATGATAAGAAATTGATGTATGGCTAAATTGACTACTAT
1 AAATTATCAAAATA-CC-TTTCATTATATGATAAGAAATTGATATATGGCTAAATGGACTACTAT
* *
7403022 GCCTACATACCATAATTACAAAAATATCCTTCTCTTATAATTATTTACCAAATATTCGCCTATG
64 GCCTACATACCATAATTACGAAAATATCCTTCTCTTATAATTATTTACTAAATATTC-CCTATG
* * * * * * **
7403086 AAATTATCAAAATACGCTTTACATTTTATGATACGAAATTGATATTTAG-TCAAGTGGATTGTTA
1 AAATTATCAAAATAC-CTTT-CATTATATGATAAGAAATTGATATATGGCT-AAATGGACTACTA
* * * * **
7403150 TGTCC-ACATATCA-AATTACGAAAGTATCCATTCTTTTATAATTTTTTACTAAATAGACCCTAA
63 TG-CCTACATACCATAATTACGAAAATATCC-TTCTCTTATAATTATTTACTAAATATTCCCT-A
7403213 TG
125 TG
* * * * * *
7403215 AAATTACCAAAATGCCTTTCAATTATATGATAAGAAATTAATATGTGGCCAAATGGACTATTATT
1 AAATTATCAAAATACCTTTC-ATTATATGATAAGAAATTGATATATGGCTAAATGGACTACTA-T
** * * * * * * ** *
7403280 TTCT-TATATCATAATTACAAAAATAT-C-T-T-TTATTAGTATTTGCTAAATATTTTCTATA
64 GCCTACATACCATAATTACGAAAATATCCTTCTCTTATAATTATTTACTAAATATTCCCTATG
* * * * *
7403338 AAATTACCAAAATACCATTTTCTATTATATGATAAAAAATTGACATATGGCCAAATAGG-CTATT
1 AAATTATCAAAATACC--TTTC-ATTATATGATAAGAAATTGATATATGGCTAAAT-GGACTACT
* * * * * * *
7403402 ATTCCT-TATATCATAATTACGAAAATACTCTTTCT-TATATAATTATTTACGAAATAATCCTTT
62 ATGCCTACATACCATAATTACGAAAATA-TCCTTCTCT-TATAATTATTTACTAAATATTCC-CT
7403465 ATG
124 ATG
*** * * * * * * * *
7403468 AAATTA-CTAGAACATTTATTCCATT-TCAAGATAAG-AATTGACAAATGGCCAAATTGAATATT
1 AAATTATC-A-AA-ATACCTTTCATTAT-ATGATAAGAAATTGATATATGGCTAAATGGACTACT
* * * * * * * *
7403530 ATTCCTTCATACCATAATTATGAAAATACCCATTCTTTTAT-ACTAATTACTAAATAATCCCTAA
62 ATGCCTACATACCATAATTACGAAAATATCC-TTCTCTTATAATTATTTACTAAATATTCCCT-A
*
7403594 TT
125 TG
* * * * * * * * *
7403596 AAATTATTAAAATACTGTTTCCATTATATGATAAGAAGTTAATATGTTGCCAAATTGACTATTAT
1 AAATTATCAAAATAC-CTTT-CATTATATGATAAGAAATTGATATATGGCTAAATGGACTACTAT
* * * * * *
7403661 GCCCACGTACCATAATTACGAAAGTATCTTTTCTCTTATAATTATTTACTAAATAATCCCATAGG
64 GCCTACATACCATAATTACGAAAATATC-CTTCTCTTATAATTATTTACTAAATATTCCC-TATG
* * * ** *
7403726 AAATTA-CTAAATACCATTTCCATTATATGATAAGAAATTTACATATGG-TCAAATTCACTATTA
1 AAATTATCAAAATACC-TTT-CATTATATGATAAGAAATTGATATATGGCT-AAATGGACTACTA
* * * * *
7403789 TGCCATTA-A-ATCATAATTACTAAAATA-CCTCTTTTTTATAATTATTTACTAAATATTTTCCT
63 TGCC--TACATACCATAATTACGAAAATATCCT-TCTCTTATAATTATTTACTAAATA-TTCCCT
*
7403851 GTG
124 ATG
* * * *
7403854 AAATTATCAAAATACCCTTTACATTATATCATAAGAAATT-ATCACATGGCCAAATGAACTATTC
1 AAATTATCAAAATA-CCTTT-CATTATATGATAAGAAATTGAT-ATATGGCTAAATGGACTA--C
* * * * * ** *
7403918 T-TCCCT-CAAACCATAATTA-TAAAAAATCCAATCTCTTATAATTA-TTACTCGATAATTCCTT
61 TATGCCTACATACCATAATTACGAAAATATCC-TTCTCTTATAATTATTTACTAAAT-ATTCCCT
* *
7403979 GTT
124 ATG
* *
7403982 AAATTATCAAGATACCTTCTTTATTATATGATAA
1 AAATTATCAAAATACC-T-TTCATTATATGATAA
7404016 AAGGTTGACA
Statistics
Matches: 924, Mismatches: 194, Indels: 142
0.73 0.15 0.11
Matches are distributed among these distances:
123 17 0.02
124 42 0.05
125 41 0.04
126 5 0.01
127 11 0.01
128 250 0.27
129 405 0.44
130 80 0.09
131 70 0.08
132 3 0.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.38
Consensus pattern (126 bp):
AAATTATCAAAATACCTTTCATTATATGATAAGAAATTGATATATGGCTAAATGGACTACTATGC
CTACATACCATAATTACGAAAATATCCTTCTCTTATAATTATTTACTAAATATTCCCTATG
Found at i:7403933 original size:258 final size:256
Alignment explanation
Indices: 7402707--7403963 Score: 836
Period size: 258 Copynumber: 4.9 Consensus size: 256
7402697 AAAAATTATA
* * * * * *
7402707 AAAACACC-TTTCCATTATATGATAA-AAATTAACATGTAGCCAAATTGACTATTA-GAACTAAA
1 AAAATACCATTTCCATTATATGATAAGAAATTGACATATGGCCAAATTGACTATTATG-CCTTAA
* * * * * * * * *
7402769 TATCATATTTACGAAAATA-CTGACTTTCTTAAAATTATTTGCTAAATA-ATCCCTCATAAAATT
65 -ACCATAATTACAAAAATACCT--CTTTTTTATAATTATTTACTAAATATTTTCCT-ATGAAATT
** ** * * * *
7402832 ATCAAAATACTTTTTTTTATTTTATGATAAGAAATTGACTTGTGGCCAAATGAACTATT-TTGTC
126 ATCAAAATAC-CCTTTACATTATATGATAAGAAATTGA-ATATGGCCAAATGAACTATTATT-CC
* * * * * * * *
7402896 TCTATATCATAATTATGAAAATACCCCTTCTCTTACAATTATTTA-TAAATTATTCAATAAGAAA
188 TC-ATATCATAATTACGAAAATATCCTTTCTCTTATAATTATTTACTAAATAATCCCATATGAAA
*
7402960 TTATC
252 TTACC
* * ** * *
7402965 AAAATACCCTTTTCATTATATGATAAGAAATTGATGTATGGCTAAATTGACTACTATGCC-TACA
1 AAAATACCATTTCCATTATATGATAAGAAATTGACATATGGCCAAATTGACTATTATGCCTTA-A
* * * **
7403029 TACCATAATTACAAAAATATCCT-TCTCTTATAATTATTTACCAAATATTCGCCTATGAAATTAT
65 -ACCATAATTACAAAAATA-CCTCTTTTTTATAATTATTTACTAAATATTTTCCTATGAAATTAT
* * * * * * * * * * *
7403093 CAAAATACGCTTTACATTTTATGATACGAAATTGATATTTAGTCAAGTGGATTGTTATGTCCACA
128 CAAAATACCCTTTACATTATATGATAAGAAATTGA-ATATGGCCAAATGAACTATTAT-TCCTCA
* * * *
7403158 TATCA-AATTACGAAAGTATCCATTCTTTTATAATTTTTTACTAAATAGA-CCC-TAATGAAATT
191 TATCATAATTACGAAAATATCCTTTCTCTTATAATTATTTACTAAATA-ATCCCAT-ATGAAATT
7403220 ACC
254 ACC
* * * * * * ** *
7403223 AAAATGCC-TTTCAATTATATGATAAGAAATTAATATGTGGCCAAATGGACTATTATTTTCTTAT
1 AAAATACCATTTCCATTATATGATAAGAAATTGACATATGGCCAAATTGACTATTA-TGCCTTAA
* * * * * *
7403287 ATCATAATTACAAAAATA--TC--TTTTATTAGTATTTGCTAAATATTTT-CTATAAAATTACCA
65 ACCATAATTACAAAAATACCTCTTTTTTATAATTATTTACTAAATATTTTCCTATGAAATTATCA
* * * * *
7403347 AAATACCATTTTCTATTATATGATAAAAAATTGACATATGGCCAAAT-AGGCTATTATTCCTTAT
130 AAATACCCTTTAC-ATTATATGATAAGAAATTGA-ATATGGCCAAATGA-ACTATTATTCCTCAT
* **
7403411 ATCATAATTACGAAAATA-CTCTTTCT-TATATAATTATTTACGAAATAATCCTTTATGAAATTA
192 ATCATAATTACGAAAATATC-CTTTCTCT-TATAATTATTTACTAAATAATCCCATATGAAATTA
*
7403474 CT
255 CC
** * * * *
7403476 AGAACAT-TTA-TTCCATT-TCAAGATAAG-AATTGACAAATGGCCAAATTGAATATTATTCCTT
1 A-AA-ATACCATTTCCATTAT-ATGATAAGAAATTGACATATGGCCAAATTGACTATTATGCCTT
* ** * * * * *
7403537 CATACCATAATTATGAAAATACC-CATTCTTTTAT-ACTAATTACTAAATA-ATCCCTAATTAAA
63 -AAACCATAATTACAAAAATACCTC-TT-TTTTATAATTATTTACTAAATATTTTCCT-ATGAAA
* ** * * *
7403599 TTATTAAAATACTGTTTCCATTATATGATAAGAAGTT-AATATGTTGCCAAATTG-ACTATTATG
124 TTATCAAAATACCCTTTACATTATATGATAAGAAATTGAATATG--GCCAAA-TGAACTATTATT
* * * *
7403662 CC-CACGTACCATAATTACGAAAGTATCTTTTCTCTTATAATTATTTACTAAATAATCCCATAGG
186 CCTCA--TATCATAATTACGAAAATATCCTTTCTCTTATAATTATTTACTAAATAATCCCATATG
7403726 AAATTA-C
249 AAATTACC
* * * *
7403733 TAAATACCATTTCCATTATATGATAAGAAATTTACATATGGTCAAATTCACTATTATGCCATTAA
1 AAAATACCATTTCCATTATATGATAAGAAATTGACATATGGCCAAATTGACTATTATGCC-TTAA
* * *
7403798 ATCATAATTACTAAAATACCTCTTTTTTATAATTATTTACTAAATATTTTCCTGTGAAATTATCA
65 ACCATAATTACAAAAATACCTCTTTTTTATAATTATTTACTAAATATTTTCCTATGAAATTATCA
* * * *
7403863 AAATACCCTTTACATTATATCATAAGAAATT-ATCACATGGCCAAATGAACTATTCTTCCCTCAA
130 AAATACCCTTTACATTATATGATAAGAAATTGA--ATATGGCCAAATGAACTATTATT-CCTCAT
* * * **
7403927 ACCATAATTA-TAAAAAATCCAATCTCTTATAATTATT
192 ATCATAATTACGAAAATATCCTTTCTCTTATAATTATT
7403964 ACTCGATAAT
Statistics
Matches: 774, Mismatches: 169, Indels: 113
0.73 0.16 0.11
Matches are distributed among these distances:
252 39 0.05
253 136 0.18
254 18 0.02
255 9 0.01
256 6 0.01
257 173 0.22
258 269 0.35
259 71 0.09
260 50 0.06
261 1 0.00
262 2 0.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.38
Consensus pattern (256 bp):
AAAATACCATTTCCATTATATGATAAGAAATTGACATATGGCCAAATTGACTATTATGCCTTAAA
CCATAATTACAAAAATACCTCTTTTTTATAATTATTTACTAAATATTTTCCTATGAAATTATCAA
AATACCCTTTACATTATATGATAAGAAATTGAATATGGCCAAATGAACTATTATTCCTCATATCA
TAATTACGAAAATATCCTTTCTCTTATAATTATTTACTAAATAATCCCATATGAAATTACC
Found at i:7404289 original size:129 final size:126
Alignment explanation
Indices: 7404139--7404776 Score: 358
Period size: 129 Copynumber: 4.9 Consensus size: 126
7404129 ACATTAAAAG
* ** * *
7404139 AATCCCTTACAAAATTACAAAATTGCCTATCCCATAATTTGATGAGAAAATAACATGTGTATAAA
1 AATCCATTACAAAATTACAAAA-TGCCTATTTCATTATATGAT-AGAAAATAACATGTGTATAAA
7404204 TGTACTATTATACCTTATATCATAATTACGAAAATACCATTTCTCTT-TAATTATTTATTAAAT
64 TGTACTATTATACCTTATATCATAATTACGAAAATACCATTT-TCTTATAATTATTTATTAAAT
* * *
7404267 AATCCTTTAAAAAATTATCAAAAT-ACTATTTTTCATTATATGATA-AAAAGTTAACATGTAGT-
1 AATCCATTACAAAATTA-CAAAATGCCTA--TTTCATTATATGATAGAAAA--TAACATGT-GTA
* * * *
7404329 CAAAT-TGACTATTATACCCTCATATCCTGATTAAC-AAAATACTCATTTTCTTATAATTATTTA
60 TAAATGT-ACTATTATA-CCTTATATCATAATT-ACGAAAATAC-CATTTTCTTATAATTATTTA
*
7404392 CTAAAT
121 TTAAAT
* * * * *
7404398 AATCCATTACGAAATTACCAAAATGCCTTTTTCATTATATGATAAGAAATTGACATGT-AACTAA
1 AATCCATTACAAAATTA-CAAAATGCCTATTTCATTATATGAT-AGAAAATAACATGTGTA-TAA
* * * * * *
7404462 ATGGACTATTATCCCTTCATATCATAATTATGAAAATATCACTTATCTTATAATTATTT-TTGAA
63 ATGTACTATTATACCTT-ATATCATAATTACGAAAATACCA-TTTTCTTATAATTATTTATTAAA
7404526 T
126 T
* ** * *
7404527 AATTC-TGTAGGAAATTACCAAAATACCT-TTTCCATTGTATGATA-AGAAATCAACATGTG-AC
1 AATCCAT-TACAAAATTA-CAAAATGCCTATTT-CATTATATGATAGA-AAAT-AACATGTGTA-
* * * * *** ** *
7404588 AAAATGGATTACTATGTTTTCATA-CAATAATTACGAAAATGTGC-TTTTCTTACAATTATTTAT
60 TAAATGTACTATTATACCTT-ATATC-ATAATTACGAAAAT-ACCATTTTCTTATAATTATTTAT
7404651 TAAAT
122 TAAAT
* ** * * * * * **
7404656 AATCCTTTATGACATTACCAAAATGCCT-TTTCGACTATATGACAAGAAATTGACATG-CAATTA
1 AATCCATTACAAAATTA-CAAAATGCCTATTTC-ATTATATGA-TAGAAAATAACATGTGTA-TA
** * **
7404719 AATGGGCTATTATGCTCTTATA-CTATAATTACG-AAATACCCATTCCCTTATAATTATT
62 AATGTACTATTATAC-CTTATATC-ATAATTACGAAAATA-CCATTTTCTTATAATTATT
7404777 ACTTACTAAA
Statistics
Matches: 401, Mismatches: 73, Indels: 71
0.74 0.13 0.13
Matches are distributed among these distances:
127 8 0.02
128 48 0.12
129 199 0.50
130 97 0.24
131 44 0.11
132 5 0.01
ACGTcount: A:0.39, C:0.15, G:0.08, T:0.38
Consensus pattern (126 bp):
AATCCATTACAAAATTACAAAATGCCTATTTCATTATATGATAGAAAATAACATGTGTATAAATG
TACTATTATACCTTATATCATAATTACGAAAATACCATTTTCTTATAATTATTTATTAAAT
Found at i:7404953 original size:129 final size:127
Alignment explanation
Indices: 7404220--7405305 Score: 538
Period size: 129 Copynumber: 8.4 Consensus size: 127
7404210 ATTATACCTT
* * * * ** *
7404220 ATATCATAATTACGAAAATAC-CATTTCTCTT-TAATTATTTATTAAATAATCCTTTAAAAAATT
1 ATATCATAATAAAGAAAATACAC-CTTCTCTTATAATTATTTACTAAATAATCCCAT-ATAAATT
** * * *
7404283 ATCAAAATACTATTTTTCATTATATGATAA-AAAGTTAACATGT-AGTCAAATTGACTATTATAC
64 ATCAAAATAC-CCTTTCCATTATATGATAAGAAA-TTAACATGTGA-CCAAATTGACTATTGT-C
7404346 CCTC
125 CC-C
* * * * * * * *
7404350 ATATCCTGATTAACAAAATACTCATTTTCTTATAATTATTTACTAAATAAT-CCATTACGAAATT
1 ATATCATAATAAAGAAAATACACCTTCTCTTATAATTATTTACTAAATAATCCCA-TA-TAAATT
* * * * * * * * *
7404414 ACCAAAATGCCTTTTTCATTATATGATAAGAAATTGACATGTAACTAAATGGACTATTATCCCTT
64 ATCAAAATACCCTTTCCATTATATGATAAGAAATTAACATGTGACCAAATTGACTATTGTCCC--
7404479 C
127 C
* * * * * * ** *
7404480 ATATCATAATTATGAAAATATCA-CTTATCTTATAATTATTT-TTGAATAATTCTGTAGGAAATT
1 ATATCATAATAAAGAAAATA-CACCTTCTCTTATAATTATTTACTAAATAATCCCATA-TAAATT
* * * * * * * ***
7404543 ACCAAAATACCTTTTCCATTGTATGATAAGAAATCAACATGTGACAAAATGGATTACTATGTTTT
64 ATCAAAATACCCTTTCCATTATATGATAAGAAATTAACATGTGACCAAATTGACTA-T-TGTCCC
7404608 C
127 C
* * *** * * * ** *
7404609 ATA-CAATAATTACGAAAAT-GTGCTTTTCTTACAATTATTTATTAAATAATCCTTTATGACATT
1 ATATC-ATAATAAAGAAAATACACCTTCTCTTATAATTATTTACTAAATAATCCCATAT-AAATT
* * * * * * * ** ** * * * * *
7404672 ACCAAAATGCCTTTTCGACTATATGACAAGAAATTGACATGCAATTAAATGGGCTATTATGCTC
64 ATCAAAATACCCTTTCCATTATATGATAAGAAATTAACATGTGACCAAATTGACTATTGTCCCC
* * * * * * *
7404736 TTATACTATAATTACG-AAATAC-CCATTCCCTTATAATTATTACTTACTAAATAAACCCGTAAG
1 ATAT-C-ATAATAAAGAAAATACACC-TTCTCTTATAATTA-T--TTACTAAATAATCCCAT-AT
** * * * * *
7404799 AAATTA-CAAAAATACTTTTTTCATTACATGATAAGAAATTGACGTGTGGCCAAATTGACTATTG
59 AAATTATC-AAAATACCCTTTCCATTATATGATAAGAAATTAACATGTGACCAAATTGACTATTG
7404863 TGCCCC
123 T-CCCC
* * *
7404869 AATATCATAATAAAGAAAATAC-CCTTCTATTATAATTACTTACTAAATAATGCCATATACAATT
1 -ATATCATAATAAAGAAAATACACCTTCTCTTATAATTATTTACTAAATAATCCCATATA-AATT
* * * *
7404933 ATCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGACAAAATCGACTA-T-TACCC
64 ATCAAAATACCCTTTCCATTATATGATAAGAAATTAACATGTGACCAAATTGACTATTGTCCCC
* * * ** * * *
7404995 ATCTCATCATGATTATGAAGGTACTCATTCTCTTATAATTATTTACTAAATAATCCCCTATGAAA
1 A--T-ATCATAATAAAGAAAATACACCTTCTCTTATAATTATTTACTAAATAATCCCATAT-AAA
* * * * * *
7405060 TGATAAAAATACCCTTTCCATTATATAATAAGTAATTAACATGTGACCAAATGGTCTAATATGTC
62 TTATCAAAATACCCTTTCCATTATATGATAAGAAATTAACATGTGACCAAATTGACT-AT-TGTC
*
7405125 CTC
125 CCC
* * *
7405128 ATACCATAATTACA-AAAATAC-CCATTCTCTTATAATTGTTTACTAAATAATCTCCA-ATAAAA
1 ATATCATAA-TAAAGAAAATACACC-TTCTCTTATAATTATTTACTAAATAATC-CCATAT-AAA
* * ** * * *
7405190 TTA-CTAAATACTCTTTCCATTATATGATAAGAAGGTAACATGTGGCTAAATTGACTATTCTCCC
62 TTATCAAAATACCCTTTCCATTATATGATAAGAAATTAACATGTGACCAAATTGACTATTGTCCC
7405254 C
127 C
* * * *
7405255 TTATACTATTAAT-ATGAAAATACACCTTCTTTTATAATTATTTGCTAAATA
1 ATAT-C-A-TAATAAAGAAAATACACCTTCTCTTATAATTATTTACTAAATA
7405306 GTCACCTAAT
Statistics
Matches: 741, Mismatches: 169, Indels: 93
0.74 0.17 0.09
Matches are distributed among these distances:
125 1 0.00
126 3 0.00
127 15 0.02
128 43 0.06
129 383 0.52
130 153 0.21
131 45 0.06
132 79 0.11
133 16 0.02
134 3 0.00
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (127 bp):
ATATCATAATAAAGAAAATACACCTTCTCTTATAATTATTTACTAAATAATCCCATATAAATTAT
CAAAATACCCTTTCCATTATATGATAAGAAATTAACATGTGACCAAATTGACTATTGTCCCC
Found at i:7405208 original size:258 final size:254
Alignment explanation
Indices: 7404221--7405222 Score: 787
Period size: 258 Copynumber: 3.9 Consensus size: 254
7404211 TTATACCTTA
* * ** *
7404221 TATCATAATTACGAAAATAC-CATTTCTCTT-TAATTATTTATTAAATAATCCTTTAAAAAATTA
1 TATCATAATTATG-AAATACTCA-TTCTCTTATAATTATTTACTAAATAATCCCGTAAGAAATTA
* * * * * * **
7404284 TC-AAAATACTATTTTTCATTATATGATAA-AAAGTTAACATGT-AGTCAAATTGACTATTATAC
64 -CAAAAATAC-CTTTTCCATTATATGATAAGAAA-TTAACATGTGA-CCAAATGGTCTAATATGT
* * * *
7404346 CCTCATATCC-TGATTA-ACAAAATACTCATTTTCTTATAATTATTTACTAAATAA-TCCATTAC
125 CCTCATA-CCATAATTACA-AAAATAC-CCTTCTCTTATAATTATTTACTAAATAATTCCAATA-
* *
7404408 GAAATTACCAAAATGCCTTTTTCATTATATGATAAGAAATTGACATGTAACTAAATGGACTATTA
186 -AAATTACCAAAATACCTTTTCCATTATATGATAAGAAATTGACATGTAACTAAATGGACTATTA
7404473 TCCCTTC
250 -CCC-TC
* * * * * *
7404480 ATATCATAATTATGAAAATA-TCACTTATCTTATAATTATTT-TTGAATAATTCTGTAGGAAATT
1 -TATCATAATTATG-AAATACTCA-TTCTCTTATAATTATTTACTAAATAATCCCGTAAGAAATT
* * * * * **
7404543 ACCAAAATACCTTTTCCATTGTATGATAAGAAATCAACATGTGACAAAATGGAT-TACTATGTTT
63 ACAAAAATACCTTTTCCATTATATGATAAGAAATTAACATGTGACCAAATGG-TCTAATATGTCC
* * *** * * * * * *
7404607 TCATACAATAATTACGAAAATGTGCTTTTCTTACAATTATTTATTAAATAA-TCCTTTATGACAT
127 TCATACCATAATTACAAAAATACCCTTCTCTTATAATTATTTACTAAATAATTCC--AATAAAAT
* * * * * * * **
7404671 TACCAAAATGCCTTTTCGACTATATGACAAGAAATTGACATGCAATTAAATGGGCTATTATGCTC
190 TACCAAAATACCTTTTCCATTATATGATAAGAAATTGACATGTAACTAAATGGACTATTACCCTC
* * * *
7404736 TTATACTATAATTACGAAATACCCATTCCCTTATAATTATTACTTACTAAATAAACCCGTAAGAA
1 -TAT-C-ATAATTATGAAATACTCATTCTCTTATAATTA-T--TTACTAAATAATCCCGTAAGAA
* * * * * * * *
7404801 ATTACAAAAATACTTTTTTCATTACATGATAAGAAATTGACGTGTGGCCAAATTGACT-AT-TGT
60 ATTACAAAAATACCTTTTCCATTATATGATAAGAAATTAACATGTGACCAAATGGTCTAATATGT
* * * * * *
7404864 GCCCCAATATCATAA-TAAAGAAAATACCCTTCTATTATAATTACTTACTAAATAATGCCATATA
125 -CCTC-ATACCATAATTACA-AAAATACCCTTCTCTTATAATTATTTACTAAATAATTCCA-ATA
* * * * * *
7404928 CAATTATCAAAATACCCTTTCCATTATATGATAAGAAATTGACATGTGACAAAATCGACTATTAC
186 AAATTACCAAAATACCTTTTCCATTATATGATAAGAAATTGACATGTAACTAAATGGACTATTAC
7404993 CCATC
251 CC-TC
* * * * *
7404998 TCATCATGATTATGAAGGTACTCATTCTCTTATAATTATTTACTAAATAATCCCCTATGAAATGA
1 T-ATCATAATTATGAA-ATACTCATTCTCTTATAATTATTTACTAAATAATCCCGTAAGAAATTA
* * * *
7405063 TAAAAATACCCTTTCCATTATATAATAAGTAATTAACATGTGACCAAATGGTCTAATATGTCCTC
64 CAAAAATACCTTTTCCATTATATGATAAGAAATTAACATGTGACCAAATGGTCTAATATGTCCTC
*
7405128 ATACCATAATTACAAAAATACCCATTCTCTTATAATTGTTTACTAAATAATCTCCAATAAAATTA
129 ATACCATAATTACAAAAATACCC-TTCTCTTATAATTATTTACTAAATAAT-TCCAATAAAATTA
*
7405193 -CTAAATA-CTCTTTCCATTATATGATAAGAA
192 CCAAAATACCT-TTTCCATTATATGATAAGAA
7405223 GGTAACATGT
Statistics
Matches: 578, Mismatches: 132, Indels: 66
0.74 0.17 0.09
Matches are distributed among these distances:
256 5 0.01
257 20 0.03
258 202 0.35
259 93 0.16
260 78 0.13
261 174 0.30
262 6 0.01
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.36
Consensus pattern (254 bp):
TATCATAATTATGAAATACTCATTCTCTTATAATTATTTACTAAATAATCCCGTAAGAAATTACA
AAAATACCTTTTCCATTATATGATAAGAAATTAACATGTGACCAAATGGTCTAATATGTCCTCAT
ACCATAATTACAAAAATACCCTTCTCTTATAATTATTTACTAAATAATTCCAATAAAATTACCAA
AATACCTTTTCCATTATATGATAAGAAATTGACATGTAACTAAATGGACTATTACCCTC
Found at i:7405603 original size:129 final size:130
Alignment explanation
Indices: 7405333--7405586 Score: 300
Period size: 129 Copynumber: 2.0 Consensus size: 130
7405323 TAAATTACCC
* * * * *
7405333 TTCTCTTATAATTATTTACTAAATATTTTGCCTATGAAATTATGAAAATGCGCCTTACATTATAT
1 TTCTTTTATAATTATTTACTAAACA-TATGCCTATGAAATTATCAAAATACGCCTTACATTATAT
* * * * * *
7405398 GAGAAGTAATTGACATTCGGCTAAATGGATTATTATGTCCTCATATCATAATTACGAAAACACTA
65 AAGAAGAAATTGACATTCAGCTAAATGGACTATTATGTCCTCAAATCATAATTACAAAAACACTA
7405463 A
130 A
* * *
7405464 TTCTTTTATAATTATTTACTAAACA-ATGCCTAATGAAATTATCTAAATACTCTTTA-ATTATAT
1 TTCTTTTATAATTATTTACTAAACATATGCCT-ATGAAATTATCAAAATACGCCTTACATTATAT
* *
7405527 AATAAGAAATTGATATAT-AGCTAAATGGACTATTATG-CCTTCAAATCATAATTACAAAAA
65 AAGAAGAAATTGACAT-TCAGCTAAATGGACTATTATGTCC-TCAAATCATAATTACAAAAA
7405587 TATCCTTTTT
Statistics
Matches: 104, Mismatches: 16, Indels: 8
0.81 0.12 0.06
Matches are distributed among these distances:
128 2 0.02
129 59 0.57
130 20 0.19
131 23 0.22
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (130 bp):
TTCTTTTATAATTATTTACTAAACATATGCCTATGAAATTATCAAAATACGCCTTACATTATATA
AGAAGAAATTGACATTCAGCTAAATGGACTATTATGTCCTCAAATCATAATTACAAAAACACTAA
Found at i:7406138 original size:254 final size:253
Alignment explanation
Indices: 7405603--7406218 Score: 618
Period size: 254 Copynumber: 2.4 Consensus size: 253
7405593 TTTTATTATA
* * * *
7405603 AATCTCTTACAAAATTACCAAAATACCCTTTTCCAATATATGATAAGAAATTGACATGTGGCCTA
1 AATCTCTTATAAAATTACCAAAATA-CCATTTCCAATATATGATAAGAAATTAACATGTGGCCAA
* * * * * *
7405668 ACGGACTATTAT-CCCTCATACCATAATTATGAAAATACTCTTTTTATAATTGTTGACAAAATAA
65 ATGGACTATTATGCCTTCATACCATAATTATGAAAATACAC--CTTATAATTATTCACAAAATAA
** ** * * * * * *
7405732 TCCTATATGAAATTGTCAAAATATGCATTCCATTATATGATAAGAATTGATAAGTGGCCAATTTG
128 TCCTATAAAAAATTACCAAAATATCCATTCCATTATATGATAAAAATTAACAAGTAGCCAAATTG
* *
7405797 AATATTATTCGCTTATACCACAATTATAAAAGAACCCATTCTCTTATAATAATTACTAAAT
193 AATATTATACCCTTATACCACAATTATAAAAGAACCCATTCTCTTATAATAATTACTAAAT
* * * * * * * *
7405858 AACCCTCTAATTAAATTACTAAAATACCATTTCCACTATATGATAACAAGTTAACATGTTGCCAA
1 AA-TCTCTTATAAAATTACCAAAATACCATTTCCAATATATGATAAGAAATTAACATGTGGCCAA
* * *
7405923 ATTGACTATTATGCCTTTATACCATAATTATGAAAATACACCTTATAATTATTCACAAAATAATT
65 ATGGACTATTATGCCTTCATACCATAATTATGAAAATACACCTTATAATTATTCACAAAATAATC
* * * *
7405988 CTCTAAAAAATTACCAAAATGTCCTTTTCATT-TATGATAAAAAATTAACATA-TAGCCAAATTG
130 CTATAAAAAATTACCAAAATATCCATTCCATTATATGAT-AAAAATTAACA-AGTAGCCAAATTG
* * ** * *
7406051 ACTATTATACCCTTATATCATGATTATGAAAA-TACCCTATT-TCTTATAATTATTTA-TAAAAT
193 AATATTATACCCTTATACCACAATTAT-AAAAGAACCC-ATTCTCTTATAA-TAATTACT-AAAT
* * *
7406113 AATCTCTTATGAAATTACCAAAATACCATTT-CAGTATATGATAAGAAATTAACATGTGGCTAAA
1 AATCTCTTATAAAATTACCAAAATACCATTTCCAATATATGATAAGAAATTAACATGTGGCCAAA
* * ** * *
7406177 TGGATTATTACGCCTTCATATTATAATTA-CAAAATACCCCTT
66 TGGACTATTATGCCTTCATACCATAATTATGAAAATACACCTT
7406219 CCCTTACAAT
Statistics
Matches: 293, Mismatches: 60, Indels: 19
0.79 0.16 0.05
Matches are distributed among these distances:
252 11 0.04
253 57 0.19
254 119 0.41
255 63 0.22
256 43 0.15
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.35
Consensus pattern (253 bp):
AATCTCTTATAAAATTACCAAAATACCATTTCCAATATATGATAAGAAATTAACATGTGGCCAAA
TGGACTATTATGCCTTCATACCATAATTATGAAAATACACCTTATAATTATTCACAAAATAATCC
TATAAAAAATTACCAAAATATCCATTCCATTATATGATAAAAATTAACAAGTAGCCAAATTGAAT
ATTATACCCTTATACCACAATTATAAAAGAACCCATTCTCTTATAATAATTACTAAAT
Found at i:7406162 original size:129 final size:128
Alignment explanation
Indices: 7405603--7407135 Score: 943
Period size: 129 Copynumber: 12.0 Consensus size: 128
7405593 TTTTATTATA
** * * *
7405603 AATCTCTTACAAAATTACCAAAATACCCTTTTCCAATATATGATAAGAAATTGACATGTGGCCTA
1 AATCTCTTATGAAATTACCAAAATA-CCTTTT-CATTATATGATAAGAAATTAACATGTGGCCAA
** * * * * *
7405668 ACGGACTATTAT-CCCTCATACCATAATTATGAAAATACTC-TTT-TTATAATTGTTGACAAAAT
64 ATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCATTTCTTATAATTATTTACTAAAT
** * * * * * *
7405730 AATC-CTATATGAAATTGTCAAAATATGCATTCCATTATATGATAAG-AATTGATAAGTGGCCAA
1 AATCTCT-TATGAAATTACCAAAATA-CCTTTTCATTATATGATAAGAAATTAACATGTGGCCAA
* * * * * * *
7405793 TTTGAATATTATTCGCTTATACCACAATTAT-AAAAGAACCCATTCTCTTATAA-TAATTACTAA
64 ATTGACTATTATGCCCTTATACCATAATTATGAAAA-TACCCATT-TCTTATAATTATTTACTAA
7405856 AT
127 AT
* * * * * * * * *
7405858 AACCCTCTAATTAAATTACTAAAATACCATTTCCACTATATGATAACAAGTTAACATGTTGCCAA
1 AA-TCTCTTATGAAATTACCAAAATACC-TTTTCATTATATGATAAGAAATTAACATGTGGCCAA
* * * *
7405923 ATTGACTATTATGCCTTTATACCATAATTATGAAAATA--CA--CCTTATAATTATTCACAAAAT
64 ATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCATTTCTTATAATTATTTACTAAAT
** * * * *
7405984 AAT-TCTCTAAAAAATTACCAAAATGTCCTTTTCATT-TATGATAAAAAATTAACATATAGCCAA
1 AATCTCT-TATGAAATTACCAAAAT-ACCTTTTCATTATATGATAAGAAATTAACATGTGGCCAA
* * *
7406047 ATTGACTATTATACCCTTATATCATGATTATGAAAATACCCTATTTCTTATAATTATTTA-TAAA
64 ATTGACTATTATGCCCTTATACCATAATTATGAAAATACCC-ATTTCTTATAATTATTTACT-AA
7406111 AT
127 AT
* * *
7406113 AATCTCTTATGAAATTACCAAAATACCATTTCAGTATATGATAAGAAATTAACATGTGGCTAAAT
1 AATCTCTTATGAAATTACCAAAATACCTTTTCATTATATGATAAGAAATTAACATGTGGCCAAAT
* * * ** * * * *
7406178 GGATTATTACG-CCTTCATATTATAATTA-CAAAATACCCCTTCCCTTACAATTATTT-CTAAAT
66 TGACTATTATGCCCTT-ATACCATAATTATGAAAATACCCATT-TCTTATAATTATTTACTAAAT
* * * * * * * * *
7406240 ATTCTCATAGGAAATTACTAAGATACCTTTTCCATTATATGATAA-AACTTGACTTGTGGTCAAA
1 AATCTCTTATGAAATTACCAAAATACCTTTT-CATTATATGATAAGAAATTAACATGTGGCCAAA
* *
7406304 TAGACTATTATG-CCTACATACCATAATTATGAAAATA-CCATTATCTTATAATTATTTACTAAA
65 TTGACTATTATGCCCT-TATACCATAATTATGAAAATACCCATT-TCTTATAATTATTTACTAAA
7406367 T
128 T
* * ** * * * * *
7406368 -ATTTCCCTATGAAATTAATAAAATGCGCTTTTCATTGTATGATAAAAAATTGACATTTGGCCAA
1 AATCT-CTTATGAAATTACCAAAATAC-CTTTTCATTATATGATAAGAAATTAACATGTGGCCAA
* * * * * *
7406432 ATGGACTATTATGCCCTTATGCCATAATTACGAAAAT--GC--TTC-T-T--GT-CTTA-T-AAT
64 ATTGACTATTATGCCCTTATACCATAATTATGAAAATACCCATTTCTTATAATTATTTACTAAAT
* ** * **
7406486 --TAT-TTATGAAATTACCAAAATGTGC-TTTCAATTATATGATAAGACA-TAGACATGTAACCA
1 AATCTCTTATGAAATTACCAAAAT-ACCTTTTC-ATTATATGATAAGAAATTA-ACATGTGGCCA
* * * * * * * * *
7406546 AATAT-ATTACTATGCCATCACACTATAATTATGAAAATACCCCTCATCTTATAATTACTTACTA
63 AAT-TGACTATTATGCCCTTATACCATAATTATGAAAATACCCAT-TTCTTATAATTATTTACTA
7406610 AAT
126 AAT
* * * * * * * **
7406613 AATCCCCTAAGAAATTA-CAAAAGTGCTCTTTCCATTACATGACAAGAAATTAATGTGTGGCCAA
1 AATCTCTTATGAAATTACCAAAA-TAC-CTTTTCATTATATGATAAGAAATTAACATGTGGCCAA
* * * * * **
7406677 ATTGACTATTGTGCCCTAATATCATAATTATCAAAAAAAAAAAACATTTCTCTTATAATTATTTA
64 ATTGACTATTATGCCCTTATACCATAATTAT----GAAAATACCCA-TT-TCTTATAATTATTTA
7406742 CTAAAT
123 CTAAAT
* * * *
7406748 AATCCCTTATGAAATTACCAAAATACCTTTTTCATTATTTGATAAGAAATTGACATGTGGCTAAA
1 AATCTCTTATGAAATTACCAAAATACC-TTTTCATTATATGATAAGAAATTAACATGTGGCCAAA
* ** * * * *
7406813 TGGACTATTAT--CCTTCATGTCATGATTACGAAAATATTCC-TTCTCTTATAATTATTCACTAA
65 TTGACTATTATGCCCTT-ATACCATAATTATGAAAATA-CCCATT-TCTTATAATTATTTACTAA
7406875 AT
127 AT
* * *** * * *
7406877 AATCCCTTATAAAATTATTGAAATACCCTTTCGATTATATGATAAGAAATTGACATGTGGCTAAA
1 AATCTCTTATGAAATTACCAAAATACCTTTTC-ATTATATGATAAGAAATTAACATGTGGCCAAA
* * * * *
7406942 TGGACTAATATGCCCTCATACC--AATTACGAAAATACTCATTCTCTTATAATTATTTACTAAAT
65 TTGACTATTATGCCCTTATACCATAATTATGAAAATACCCATT-TCTTATAATTATTTACTAAAT
* ** * * *
7407005 AATCTAC-TCTGAAATTACCAAAATTTTCTTTTGATTATATGATTAA-AAGTTAACATGTGGCTA
1 AATCT-CTTATGAAATTACCAAAA-TACCTTTTCATTATATGA-TAAGAAATTAACATGTGGCCA
* * * * * *
7407068 AATTGACTATTATG-CCTTCATATCATAGA-TACGAAAATACCC-CTT-TAATAACTATTTGCTA
63 AATTGACTATTATGCCCTT-ATACCATA-ATTATGAAAATACCCATTTCTTATAATTATTTACTA
7407129 AAT
126 AAT
7407132 AATC
1 AATC
7407136 GCCTAATTAT
Statistics
Matches: 1086, Mismatches: 242, Indels: 156
0.73 0.16 0.11
Matches are distributed among these distances:
114 5 0.00
115 65 0.06
117 3 0.00
118 3 0.00
119 1 0.00
120 5 0.00
121 2 0.00
122 1 0.00
123 1 0.00
124 62 0.06
125 58 0.05
126 49 0.05
127 136 0.13
128 196 0.18
129 264 0.24
130 120 0.11
131 14 0.01
133 3 0.00
134 17 0.02
135 76 0.07
136 5 0.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (128 bp):
AATCTCTTATGAAATTACCAAAATACCTTTTCATTATATGATAAGAAATTAACATGTGGCCAAAT
TGACTATTATGCCCTTATACCATAATTATGAAAATACCCATTTCTTATAATTATTTACTAAAT
Found at i:7407305 original size:130 final size:126
Alignment explanation
Indices: 7407151--7408082 Score: 672
Period size: 130 Copynumber: 7.3 Consensus size: 126
7407141 ATTATTTGCT
* * *
7407151 AAAATA-CCTTTCTCTTATAATTATTTACTAAATATTTGCCTATGAAATTACCAAAATGTGCCTT
1 AAAATACCCTTT-TCTTATAATTATTTACTAAATA-ATCCCTATGAAATTACCAAAAT-TCCCTT
* * * * *
7407215 ACATTATACGATAAGTAATTGACATTTGGCCAAATGGACTATTACGCCCTCAAATCATAATTACG
63 CCATTATATGATAAG-AATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACG
* * ** * * *
7407280 AAAATATCCCTTTTCTTATATTTATTTATTGGATAATCCCTGATGAAATTACCAACATACCCTTT
1 AAAATA-CCCTTTTCTTATAATTATTTACTAAATAATCCCT-ATGAAATTACCAAAATTCCCTTC
* * * * *
7407345 CAATATATGATAAGAAATTGACATGTGGCCAAAGGGATTATTAT-CCCTCATATCATAATAATG
64 CATTATATGATAAG-AATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACG
* * * *
7407408 AAAATAATCCTTGTCTTATAATTATTTACAAAATAATCCCGTATGAAATTACCAAAATAT-GCTT
1 AAAAT-ACCCTTTTCTTATAATTATTTACTAAATAATCCC-TATGAAATTACCAAAAT-TCCCTT
* * * * * ** * * * *
7407472 -CATTACATAATAATAATTGGCAAGTGGCCAAATAAAATATTATTCGCTCATA-CTATAATTATG
63 CCATTATATGATAAGAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATC-ATAATTACG
* * *** *
7407535 AAAATACCCATTTTCTTATAA-TAATTACTAAA-AATCCCTAATTAAATTGTTAAAATACCCGTT
1 AAAATACCC-TTTTCTTATAATTATTTACTAAATAATCCCT-ATGAAATTACCAAAATTCCC-TT
* * * * * *
7407598 CCATTATATGATAAGAAGTTAACATGTTGCCAAATTGACTATTATGCCCCCA-ACCATAATTACA
63 CCATTATATGATAAGAA-TTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACG
* * * * **
7407662 AAAATACCC----CATATAATTATTTACTAAATAATTCTCTA-AAACATTATCAAAATGTCTTTT
1 AAAATACCCTTTTCTTATAATTATTTACTAAATAA-TCCCTATGAA-ATTACCAAAAT-TCCCTT
** * * * *
7407722 CCAACATATGATAAAAAATTAACATGTGGCCAAATTGACTATTATACCCTCATATCATAATTACG
63 CCATTATATGAT-AAGAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACG
** * * **
7407787 AAAATAATCTATTTCTTATAATTATTTACAAAATAATCCCTTATGAAATTACCAAAATACTTTTT
1 AAAATACCCT-TTTCTTATAATTATTTACTAAATAATCCC-TATGAAATTACCAAAATTC-CCTT
* * * * *
7407852 CTATTATATGATGGAA-AATTGACATTTGGCCAAATGGACTATTATGCCCTTATATGATAATTAT
63 CCATTATATGAT--AAGAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTAC
7407916 G
126 G
* * * * * ** *
7407917 AAAATACCCTTTCTCTTATAAGTATGTACTAAAGAATCCCTAATGTAACTACCATAACGT-CATT
1 AAAATACCCTTT-TCTTATAATTATTTACTAAATAATCCCT-ATGAAATTACCA-AAATTCCCTT
** * * * ** * * *
7407981 TAATTATATGATAAGAAATTGACGTGTAGCCAAATGGACTAATATGCTTTTATACCATAATTATG
63 CCATTATATGATAAG-AATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACG
* *
7408046 AAAATAGTCATTCTT-TTATAATTATTTACTAAATAAT
1 AAAATA-CCCTT-TTCTTATAATTATTTACTAAATAAT
7408083 TTGTCCTCAA
Statistics
Matches: 634, Mismatches: 131, Indels: 76
0.75 0.16 0.09
Matches are distributed among these distances:
122 6 0.01
123 12 0.02
124 56 0.09
125 45 0.07
126 38 0.06
127 72 0.11
128 90 0.14
129 138 0.22
130 165 0.26
131 12 0.02
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.36
Consensus pattern (126 bp):
AAAATACCCTTTTCTTATAATTATTTACTAAATAATCCCTATGAAATTACCAAAATTCCCTTCCA
TTATATGATAAGAATTGACATGTGGCCAAATGGACTATTATGCCCTCATATCATAATTACG
Found at i:7408344 original size:113 final size:114
Alignment explanation
Indices: 7408169--7408387 Score: 264
Period size: 113 Copynumber: 1.9 Consensus size: 114
7408159 AAAATGCCAT
* * **
7408169 TTTCATTATATGATAAGAAATTCATATGTGGCAAAATTGACTATTACACCCTTAAATAATAATTA
1 TTTCATTATATGATAAGAAATTAACATGTGGCAAAATAAACTATTACACCCTTAAATAATAATTA
** *
7408234 -CAAAATA-CCGTTTTCTTATAATTATTTACCAAATAATCCCTATACTC
66 TCAAAATACCCCATCTCTTATAATTATTTACCAAATAATCCCTATACTC
* *** * *
7408281 TTTCGATTATATGATAAGAAATTAACATGTGATC-AAATAAACTATTTTGCCCTTATATCATAAT
1 TTTC-ATTATATGATAAGAAATTAACATGTG-GCAAAATAAACTATTACACCCTTAAATAATAAT
* *
7408345 TATGAAAATACCCCATCTCTTATAATTATTTACTAAATAATCC
64 TATCAAAATACCCCATCTCTTATAATTATTTACCAAATAATCC
7408388 TTAATGAAAT
Statistics
Matches: 88, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
112 4 0.05
113 49 0.56
114 7 0.08
115 28 0.32
ACGTcount: A:0.39, C:0.16, G:0.06, T:0.38
Consensus pattern (114 bp):
TTTCATTATATGATAAGAAATTAACATGTGGCAAAATAAACTATTACACCCTTAAATAATAATTA
TCAAAATACCCCATCTCTTATAATTATTTACCAAATAATCCCTATACTC
Found at i:7408840 original size:130 final size:130
Alignment explanation
Indices: 7408281--7408845 Score: 380
Period size: 130 Copynumber: 4.4 Consensus size: 130
7408271 CCCTATACTC
* * ** ** * *
7408281 TTTCGATTATATGATAAGAAATTAACATGTGATCAAATAAACTATTTTGCCCTTATATCATAATT
1 TTTC-ATTATATGATAAGAAATTGACATGTGGTCAAATGGACTATTAAGCCCTAATAACATAATT
* * * * ** * *
7408346 ATG-AAAATACCCCATCTCTTATAATTATTTACTAAATAAT-CCTTAATGAAATTACGAAAATAA
65 ATGAAAAAT-CCCCTTCTCTAATAATTATTTAATAAACAATGCCACAA-GAAATTACTAAAATAC
*
7408409 CAT
128 CTT
* * * * * * * * * *
7408412 TTCCATTACATGATAAGAAATTGACATATAGCCAAAAT-GAGTATTATGCCATCATACCATAATT
1 TTTCATTATATGATAAGAAATTGACATGTGGTC-AAATGGACTATTAAGCCCTAATAACATAATT
* * * * * * **
7408476 A-CAAAAATACCCTTATTCTTATAATTATTTACA-AAATAGT-CTTCAAGAAATTACTAAAATAC
65 ATGAAAAATCCCCTT-CTCTAATAATTATTTA-ATAAACAATGCCACAAGAAATTACTAAAATAC
7408538 CTT
128 CTT
* * * * * * ** * *
7408541 TTTCCTTATATAAGAAGCAATTGA-ATGAGGTCAGATGGACTATTATTCCTTAATAATATAATTA
1 TTTCATTATATGATAAGAAATTGACATGTGGTCAAATGGACTATTAAGCCCTAATAACATAATTA
* * * * * *
7408605 TGAAAATTCCCCTTCTCTTATAATTATTTACTAAATAATGCCTCAAGAAATTAGC-AAAATACTT
66 TGAAAAATCCCCTTCTCTAATAATTATTTAATAAACAATGCCACAAGAAATTA-CTAAAATACCT
7408669 T
130 T
* ** * * * **
7408670 TTTCATTATATGATAGGAAGA-TGACAAATGGTTAAGTGGACTATTAAGCCCTCATTCCATAATT
1 TTTCATTATATGATAAGAA-ATTGACATGTGGTCAAATGGACTATTAAGCCCTAATAACATAATT
* * *
7408734 ATGAAAAAAT-GCTTTCTCTAATAGTTA-TTAATAAACAATTG-CACAAGAAATTACTAAAATAT
65 ATG-AAAAATCCCCTTCTCTAATAATTATTTAATAAACAA-TGCCACAAGAAATTACTAAAATA-
7408796 CCTT
127 CCTT
*
7408800 TTTCATTATATGATAAGAAATTGACATGTGCTCAAATGGACTATTA
1 TTTCATTATATGATAAGAAATTGACATGTGGTCAAATGGACTATTA
7408846 TGCGCTTACA
Statistics
Matches: 336, Mismatches: 82, Indels: 33
0.75 0.18 0.07
Matches are distributed among these distances:
127 3 0.01
128 47 0.14
129 113 0.34
130 161 0.48
131 12 0.04
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (130 bp):
TTTCATTATATGATAAGAAATTGACATGTGGTCAAATGGACTATTAAGCCCTAATAACATAATTA
TGAAAAATCCCCTTCTCTAATAATTATTTAATAAACAATGCCACAAGAAATTACTAAAATACCTT
Found at i:7408917 original size:80 final size:80
Alignment explanation
Indices: 7408833--7408984 Score: 195
Period size: 80 Copynumber: 1.9 Consensus size: 80
7408823 ACATGTGCTC
* ** *
7408833 AAATGGACTATTATG-CGCTTACACCATTATTACGATAA-TCACCA-TTCTCTTATAATTATTTA
1 AAATGGACTACTATGAC-CTTACACCACAATTAC-AAAACT-ACCATTTCTCTTATAATTATTTA
7408895 -TGAAATAATTCCTCAATA
63 CT-AAATAATTCCTCAATA
*
7408913 AAATGGACTACTATGACCTTATACCACAATTACAAAACTACCATTTCTCTTATAATTATTTACTA
1 AAATGGACTACTATGACCTTACACCACAATTACAAAACTACCATTTCTCTTATAATTATTTACTA
7408978 AATAATT
66 AATAATT
7408985 TCTTATAAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
79 7 0.11
80 54 0.86
81 2 0.03
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (80 bp):
AAATGGACTACTATGACCTTACACCACAATTACAAAACTACCATTTCTCTTATAATTATTTACTA
AATAATTCCTCAATA
Found at i:7409598 original size:129 final size:127
Alignment explanation
Indices: 7409175--7409739 Score: 370
Period size: 130 Copynumber: 4.4 Consensus size: 127
7409165 AATAGCCATT
* * *** * ** *
7409175 TTCT-TATAATTAATTACTAAATAATCCTATATGAAATTATTGAAATGCCATTTTTGTTATTTGA
1 TTCTCTATAATTATTTACTAAATAAT-CTCTATGAAATTACCAAAATACC-TTTTCATTATATGA
* * * * * * * * ** ** *
7409239 TAAGAAAATTGACATATGTCTAAATGGACTATTAT-CCCTCATATCATGGTTAGGAAAATACTCC
64 TAAG-AAATTAACATGTGGCCAAATGAAATATAATGCCCTCATACCATAATTACAAAAATACTCA
* * * * *
7409303 TTCTCTCATAGTTATTTGCTAAATATTTCTCTATGAAATTACCAAATTACCCTTTCTATTATATG
1 TTCTCT-ATAATTATTTACTAAATA-ATCTCTATGAAATTACCAAAATACCTTTTC-ATTATATG
* * * ** * * * *
7409368 ATAAGAACTTGACATATGGCCAAATGGTATATTATGCCCTCATACCATAATTATAAAAATGCCCA
63 ATAAGAAATTAACATGTGGCCAAATGAAATATAATGCCCTCATACCATAATTACAAAAATACTCA
* * * ** * *
7409433 TTCTTTTATAACTATTTAGTAGGTAATCCTCTATGAAATTACCAAAATACCATTTTCAATAAATG
1 TTC-TCTATAATTATTTACTAAATAAT-CTCTATGAAATTACCAAAATACC-TTTTCATTATATG
7409498 ATAAGAAATTAACATGTGGCCAAAT-AAACTATAAT-CCCTTCAT-CCATAATTACAAAAATACT
63 ATAAGAAATTAACATGTGGCCAAATGAAA-TATAATGCCC-TCATACCATAATTACAAAAATACT
*
7409560 CT
126 CA
* *
7409562 TTACTCTATAATTATTTACTAAATAATCTCATATGAAATTTCCAAAATGCCTTGTTCATTATATG
1 TT-CTCTATAATTATTTACTAAATAATCTC-TATGAAATTACCAAAATACCTT-TTCATTATATG
* * * * * ** * *
7409627 ATAAGAAGTTAAAATGTGGCCAGATTG-ATTACT-ATGCCATCATAATAGAATTACAAAAATACC
63 ATAAGAAATTAACATGTGGCCA-AATGAAATA-TAATGCCCTCATACCATAATTACAAAAATACT
*
7409690 CC
126 CA
* * * * *
7409692 TTCTAATATAACTATTTACTAAATAATCACCTATGAATTTAACAAAAT
1 TTCT-CTATAATTATTTACTAAATAATC-TCTATGAAATTACCAAAAT
7409740 GTCTGTGGCT
Statistics
Matches: 343, Mismatches: 74, Indels: 38
0.75 0.16 0.08
Matches are distributed among these distances:
128 9 0.03
129 128 0.37
130 198 0.58
131 8 0.02
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (127 bp):
TTCTCTATAATTATTTACTAAATAATCTCTATGAAATTACCAAAATACCTTTTCATTATATGATA
AGAAATTAACATGTGGCCAAATGAAATATAATGCCCTCATACCATAATTACAAAAATACTCA
Found at i:7410217 original size:128 final size:129
Alignment explanation
Indices: 7409755--7410500 Score: 676
Period size: 128 Copynumber: 5.8 Consensus size: 129
7409745 TGGCTAAAAG
* ** ** * * *
7409755 GACTATTATGCCTTCAAACCATAATTATAAAAATAGGCTTCACTTTTAATTATTTACTAAATAAT
1 GACTATTATGCCTTCATACCATAATTACGAAAATACCCTTCTCATATAATTATTTACTAAATAAT
* * * * ** * *
7409820 CCCTTCA--AAATTACTAAAATGCCATTTCCATTATAT-ATTAA-AAATTGACAAATAGTCAAAT
66 CCCTT-ATTAAATTACCAAAATACCCTTTCCATTATATGA-TAAGAAATTAACATGTGGCCAAAT
7409881 T
129 T
* * * * *
7409882 GATTATTATGTCCTT-ATACCATAATCATGAAAATAACCTTTCTCTTATAATTATTTACTAAA-A
1 GACTATTATG-CCTTCATACCATAATTACGAAAAT-ACCCTTCTCATATAATTATTTACTAAATA
* * * * *
7409945 AACCCTCTAATAAATTACCAAAATAGCCTTTCCAAT-TATGATTAGAAATTAACATGTGGCCAAA
64 ATCCCT-TATTAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTAACATGTGGCCAAA
7410009 TT
128 TT
* * * * * *
7410011 AACTATTATGCCTTCATACTATAACTATGAAAATACAAC-TCT--TATAATTATTTCCTAAATAA
1 GACTATTATGCCTTCATACCATAATTACGAAAATAC-CCTTCTCATATAATTATTTACTAAATAA
* * * * * *
7410073 TCCATTATGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAGTTAACATATTGCTAAATT
65 TCCCTTATTAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTAACATGTGGCCAAATT
7410138 GACTATTATGCCTTCATACCATAATTACGAAAATACCCTTCTCATA-AATTATTTACTAAATAAT
1 GACTATTATGCCTTCATACCATAATTACGAAAATACCCTTCTCATATAATTATTTACTAAATAAT
* ** * *
7410202 CTCTTATTAAATTACCAAAATACCC-TTCGTGTTATATGATAAGCAATTAACATGTGGCCAAATG
66 CCCTTATTAAATTACCAAAATACCCTTTC-CATTATATGATAAGAAATTAACATGTGGCCAAATT
* * * * * *
7410266 GATTATTATTCCCTT-ATACCATAATTACAAAAAAACCAATTTTCATATAATTATTTACTAAATA
1 GACTATTA-TGCCTTCATACCATAATTACGAAAATACC-CTTCTCATATAATTATTTACTAAATA
* * ** * * *
7410330 ATCCCCTATGAAATTACCAAAATAATCTTTCCGTTATATGATAACAAATTGACATGTGGCCAAAT
64 ATCCCTTATTAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTAACATGTGGCCAAAT
*
7410395 G
129 T
* * * * * ** *
7410396 GATTACTATGCCATCATATCATAATTACTAAAATACCCCTTCTTTTATAATTA-TTACAAAATAA
1 GACTATTATGCCTTCATACCATAATTACGAAAATA-CCCTTCTCATATAATTATTTACTAAATAA
** * *
7410460 TTTCTTATTAAATTACCAGAGTACCCTTTCCATTA-ATGATA
65 TCCCTTATTAAATTACCAAAATACCCTTTCCATTATATGATA
7410501 TGCATTGAAC
Statistics
Matches: 506, Mismatches: 92, Indels: 41
0.79 0.14 0.06
Matches are distributed among these distances:
126 42 0.08
127 100 0.20
128 140 0.28
129 115 0.23
130 104 0.21
131 5 0.01
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.36
Consensus pattern (129 bp):
GACTATTATGCCTTCATACCATAATTACGAAAATACCCTTCTCATATAATTATTTACTAAATAAT
CCCTTATTAAATTACCAAAATACCCTTTCCATTATATGATAAGAAATTAACATGTGGCCAAATT
Found at i:7410344 original size:258 final size:254
Alignment explanation
Indices: 7409801--7410500 Score: 711
Period size: 258 Copynumber: 2.7 Consensus size: 254
7409791 GCTTCACTTT
* * * *
7409801 TAATTATTTACTAAATAAT-CCCT-TCAAAATTACTAAAATGCCATTTCCATTATAT-ATTAAAA
1 TAATTATTTACTAAATAATCCCCTAT-GAAATTACCAAAATACCCTTTCCATTATATGA-TAAAA
* * * *
7409863 ATTGACAAATAG-TCAAATTGATTATTATGTCCTT-ATACCATAATCATGAAAATAACCTTTCTC
64 ATTGACATATAGCT-AAATTGATTATTATG-CCTTCATACCATAATTACGAAAAT-ACCCTTCTC
* * * * *
7409926 TTATAATTATTTACTAAA-AAACCCTCTAATAAATTACCAAAATAGCCTTTCCAATTATGATTAG
126 TTATAATTATTTACTAAATAATCTCT-TATTAAATTACCAAAATACCCTTTCCAATTATGATAAG
* * * ** * *
7409990 AAATTAACATGTGGCCAAATTAACTATTATGCCTTCATACTATAACTATGAAAATACAACTCTTA
190 AAATTAACATGTGGCCAAATGAACTATTATCCCTTCATACCATAACTACAAAAAAACAACTCATA
* ** *
7410055 TAATTATTTCCTAAATAATCCATTATGAAATTACCAAAATACCCTTTCCATTATATGATAAGAAG
1 TAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAA-AAA
* * * *
7410120 TTAACATATTGCTAAATTGACTATTATGCCTTCATACCATAATTACGAAAATACCCTTCTCATA-
65 TTGACATATAGCTAAATTGATTATTATGCCTTCATACCATAATTACGAAAATACCCTTCTCTTAT
*** *
7410184 AATTATTTACTAAATAATCTCTTATTAAATTACCAAAATACCC-TTCGTGTTATATGATAAGCAA
130 AATTATTTACTAAATAATCTCTTATTAAATTACCAAAATACCCTTTC-CAAT-TATGATAAGAAA
* * * *
7410248 TTAACATGTGGCCAAATGGATTATTATTCCCTT-ATACCATAATTACAAAAAAACCAATTTTCAT
193 TTAACATGTGGCCAAATGAACTATTA-TCCCTTCATACCATAACTACAAAAAAA-CAA--CTCAT
7410312 A
254 A
** *
7410313 TAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATAATCTTTCCGTTATATGATAACAAA
1 TAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAA-AAA
* * * * * * * * *
7410378 TTGACATGTGGCCAAATGGATTACTATGCCATCATATCATAATTACTAAAATACCCCTTCTTTTA
65 TTGACATATAGCTAAATTGATTATTATGCCTTCATACCATAATTACGAAAATA-CCCTTCTCTTA
* * * *
7410443 TAATTA-TTACAAAATAATTTCTTATTAAATTACCAGAGTACCCTTTCC-ATTAATGATA
129 TAATTATTTACTAAATAATCTCTTATTAAATTACCAAAATACCCTTTCCAATT-ATGATA
7410501 TGCATTGAAC
Statistics
Matches: 367, Mismatches: 62, Indels: 30
0.80 0.14 0.07
Matches are distributed among these distances:
253 3 0.01
254 52 0.14
255 98 0.27
256 51 0.14
257 2 0.01
258 111 0.30
259 42 0.11
260 8 0.02
ACGTcount: A:0.40, C:0.18, G:0.06, T:0.36
Consensus pattern (254 bp):
TAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATACCCTTTCCATTATATGATAAAAAT
TGACATATAGCTAAATTGATTATTATGCCTTCATACCATAATTACGAAAATACCCTTCTCTTATA
ATTATTTACTAAATAATCTCTTATTAAATTACCAAAATACCCTTTCCAATTATGATAAGAAATTA
ACATGTGGCCAAATGAACTATTATCCCTTCATACCATAACTACAAAAAAACAACTCATA
Found at i:7410959 original size:129 final size:128
Alignment explanation
Indices: 7410562--7413733 Score: 2168
Period size: 129 Copynumber: 24.6 Consensus size: 128
7410552 GACAAGAGAG
* * * * *
7410562 TGACATGTGTCTAAATGTACTATTATGCCCAT-ATAACATAATTATGAAAATACCACTTCTCTTA
1 TGACATGTGGCCAAATGGACTATTATG-CCTTCATACCATAATTATGAAAATACC-CTTCTCTTA
* *** ** * * *
7410626 CAATTATTTACTAAATAATCTTATAAAAAATTAGCAAAATGCCATTTCCAATATATGATAAGAAA
64 TAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATGCC-TTTTCATTATATGATAAGAAA
7410691 T
128 T
** * ** ** ** * ** * * *
7410692 TGTTATGTGACTGAATCAACTATTACACCATT-ATATCATAATTACAAAAATATCCTTTTTCTTG
1 TGACATGTGGCCAAATGGACTATTATGCC-TTCATACCATAATTATGAAAATA-CCCTTCTCTTA
* * * * *
7410756 TAATTATTCAGTAAATAATCCCTTATGAAAATACCAAAAT-ACTCTTTCAATTATATGATAAGAA
64 TAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATGCCT-TTTC-ATTATATGATAAGAA
*
7410820 AA
127 AT
* * * * * *
7410822 TAACATGTGGTCAAATGGGCTATTATGCCTTTATATCATAATTATGAAAATACCCCATCTCTTAT
1 TGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATA-CCCTTCTCTTAT
* * * * * * * *
7410887 AAATATTTACTAAA-AAGCCCCAATGAAATTAGCAAAATACCATTTTCGTTATATGATACGAAAC
65 AATTATTTACTAAATAATCCCCTATGAAATTACCAAAATGCC-TTTTCATTATATGATAAGAAAT
* * * ** * *
7410951 TGACATGTGACTAAAAGGACTATTACACAC-TCATACCATAATTA-CAAAATACCCTTTCTCTCA
1 TGACATGTGGCCAAATGGACTATTATGC-CTTCATACCATAATTATGAAAATACCC-TTCTCTTA
* ** * *
7411014 TAATTATTTACAAAATAATCCATTAAGAAATTACTAAAATGCCTTTTCCATTATATG-TAAGAAA
64 TAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATGCCTTTT-CATTATATGATAAGAAA
7411078 T
128 T
* * * * * * * *
7411079 TG-CATGAGGTCAATTAGACTTTTAT--TTATCA-ATCACATAATTACGAAAATACCCTT-TTTT
1 TGACATGTGGCCAAATGGACTATTATGCCT-TCATA-C-CATAATTATGAAAATACCCTTCTCTT
** ** * * * *
7411139 ATAATTATTTACTAAATAAT-CCCTCAAAAAATTAGTAAACTACCAGTTCCATTATATGATAAGA
63 ATAATTATTTACTAAATAATCCCCT-ATGAAATTACCAAAATGCC-TTTTCATTATATGATAAGA
*
7411203 AGT
126 AAT
* * * * * * *
7411206 TAACATATTGCCAAATGGACTATTATGCTTTTATACCATAATTACGAAAATACACTTTCTCTTAT
1 TGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATAC-CCTTCTCTTAT
* * * * * *
7411271 AATTATTAACTAAATAATCCCAC-AAGAAATTACTAAAATACCCTTTCTATTATATGATGAGAAA
65 AATTATTTACTAAATAATCCC-CTATGAAATTACCAAAATGCCTTTTC-ATTATATGATAAGAAA
7411335 T
128 T
* * * * * * *
7411336 TGATATGTGGTCAAAAGGACTATTATGCCGTCATACCA-ATGTTATGATAATACCCTTTCTTTTA
1 TGACATGTGGCCAAATGGACTATTATGCCTTCATACCATA-ATTATGAAAATACCC-TTCTCTTA
** * * * *
7411400 TAATTATTTACTAAATAAT-TTCTCAAGAAATTACTAAAATGCCTTATCCATTATATGGTAAGAA
64 TAATTATTTACTAAATAATCCCCT-ATGAAATTACCAAAATGCCTT-TTCATTATATGATAAGAA
7411464 AT
127 AT
* * * * * * *
7411466 TTACATGT-GCCTAAATAGAC-ATTATGCCCTCATACCATAATTA-CAAATGTATTCTTTCTCTT
1 TGACATGTGGCC-AAATGGACTATTATGCCTTCATACCATAATTATGAAA-ATA-CCCTTCTCTT
* * * * *
7411528 ATAATTATTTACTAAATAATCTCTTATGAAATTACAAAAATGACCTTTACATTATATGATAAGAT
63 ATAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATG-CCTTTTCATTATATGATAAGAA
7411593 AT
127 AT
* * * * * * *
7411595 TGACATGTGGCCAAATAGACTACTGTGCCATT-ATACCTTAATTATAAAAATACCATTCTTTTAT
1 TGACATGTGGCCAAATGGACTATTATGCC-TTCATACCATAATTATGAAAATACCCTTCTCTTAT
* *
7411659 AATTATTTGCTAAATAATCCCCTATGAAATTACCAAAATGCCTTTCACATTATATGATAAGAAAT
65 AATTATTTACTAAATAATCCCCTATGAAATTACCAAAATGCCTTT-TCATTATATGATAAGAAAT
* * * * * * * * *
7411724 TGACATGTAGCCAAATGGCCTGTTATGCCTTGATATCTTAATTAGGAAAATAACCATTTTCTTAT
1 TGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAAT-ACCCTTCTCTTAT
* * * * * *
7411789 AATTATTTATTAAATAATCCTCTATGAAATTATCGAAATACCCTTTAT-GTTATATGATAAGAAA
65 AATTATTTACTAAATAATCCCCTATGAAATTACCAAAAT-GCCTTT-TCATTATATGATAAGAAA
7411853 T
128 T
* * * * *
7411854 TGACATG-CGCCTAAATGGACTATTAT-CAC-TCATATCATAATTAGGAAAATATTCCTT-TTTT
1 TGACATGTGGCC-AAATGGACTATTATGC-CTTCATACCATAATTATGAAAATA-CCCTTCTCTT
* * * * * * *
7411915 AGTAGTTATTTGCTAAATATTCTCCTATAAAATTACCAAAATACTTTTTCTATTATATGATAAGA
63 A-TAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATGCCTTTTC-ATTATATGATAAGA
*
7411980 AGT
126 AAT
* * * *
7411983 TGACATGTGGCCAAATGGACTATTATGTCCTT-ATACCATAATTACGAAAATACCTTTCTTTTAC
1 TGACATGTGGCCAAATGGACTATTATG-CCTTCATACCATAATTATGAAAATACCCTTCTCTTAT
* * *** * ** * *
7412047 AGTCAATTT-CTAAATAATCTTTTA-AAAAGTTATTAAAATGCCATTTCCATTATATGATAAGCA
65 AAT-TATTTACTAAATAATCCCCTATGAAA-TTACCAAAATGCC-TTTTCATTATATGATAAGAA
7412110 AT
127 AT
* ** * * * * * *
7412112 TGACATGTGTCGTATTGGTCTATTATGCCCTCATACCATAATTATAAAAATACTCTTTTCTTATA
1 TGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATACCCTTCTCTTATA
* * * * * * * * *
7412177 ATTATTTATTTAATAATCTCTTTTAAAATTACCAAAATACCATTTACATTTTATGATAAGAAAT
66 ATTATTTACTAAATAATCCCCTATGAAATTACCAAAATGCC-TTTTCATTATATGATAAGAAAT
* * * ** * * * *
7412241 TGACATTTGGCTAAATGAACTACCATGCC-ACATATCGTAATTATGAAAATACCTTTCTCTTATA
1 TGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATACCCTTCTCTTATA
* *** *
7412305 ATTATTTTCTAAATAATCTTGTATGAAATTACCAAAATGCCTTTCACATTATATGATAAGAAAT
66 ATTATTTACTAAATAATCCCCTATGAAATTACCAAAATGCCTTT-TCATTATATGATAAGAAAT
* * * * * * *
7412369 TGACATGTGGCCAATTGGACTATTATG-TTTCCATATCTTAATTATGAAAATAGCCTTTCTTTTC
1 TGACATGTGGCCAAATGGACTATTATGCCTT-CATACCATAATTATGAAAATA-CCCTTCTCTTA
* * *** * * *
7412433 TAATTATGTACTAAATGA-CCCTCTATGAAATTATTGAAATACATTTTCTATTATATGATAAAAA
64 TAATTATTTACTAAATAATCCC-CTATGAAATTACCAAAATGCCTTTTC-ATTATATGATAAGAA
7412497 AT
127 AT
*** * * * * * * *
7412499 TGACATGCATCCAAATGGACTATTAT-CCCTAATATCATAATTAGGAAAATACTCATTTTCTTGT
1 TGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATAC-CCTTCTCTTAT
* * * * * *
7412563 AGTTATTTGCTAAATATTCTCCTATGAAGTTACCAAAATGCCCTTTTCTATTATATGATAAGAAC
65 AATTATTTACTAAATAATCCCCTATGAAATTACCAAAATG-CCTTTTC-ATTATATGATAAGAAA
7412628 T
128 T
* * * * * **
7412629 TCATATGTGGCCCAATGGACTATTATGCCCTCATACCATAATTACGAAAATACATTTCTCTTATA
1 TGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATACCCTTCTCTTATA
* * * *
7412694 ATTATTTTCTAAATAAT-CCCTCA-AAAATTACTAAAATGCCCTTTTCATTATATGATAAGCAAT
66 ATTATTTACTAAATAATCCCCT-ATGAAATTACCAAAATG-CCTTTTCATTATATGATAAGAAAT
* * * ** * *
7412757 TGACATGTGGCCAAATGGTCTGTTATGCCTTCATATCATAATTACAAAAATACCATTCTTTTATA
1 TGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATACCCTTCTCTTATA
* *
7412822 ATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCTTTTACATTATACGATAAGAAAT
66 ATTATTTACTAAATAATCCCCTATGAAATTACCAAAATGCCTTTT-CATTATATGATAAGAAAT
* * * * * * * * *
7412886 TGACATTTGGCTAAACGAACTATTATGCCTTTATACCTTGATTATGAAAATGCCCTTCTGTTATA
1 TGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATACCCTTCTCTTATA
* * * *** *
7412951 ATT-TTTACTAAATAATCCCCTATGTAGTAACCAAAATGCCTAAGACATTATATGATTAGAAAT
66 ATTATTTACTAAATAATCCCCTATGAAATTACCAAAATGCCT-TTTCATTATATGATAAGAAAT
* * ** ** * *
7413014 TGACATGTGGCCAAATGGATTATTATGCCTTTATAATATAATTACAAAAATAACCTTTTTCTTAT
1 TGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAAT-ACCCTTCTCTTAT
*** * * * * * *
7413079 AATTATTTACTAAATAATCTTTTATAAAATTATCAAAATACCCTTTCTATTATATGGTAAAAAAT
65 AATTATTTACTAAATAATCCCCTATGAAATTACCAAAATGCCTTTTC-ATTATATGATAAGAAAT
* * * *
7413144 TGACAT-TTGCCTAAATGGACTATTCT--CTCTCATATCATAATTA-GAAAAATACTTCTTCTCT
1 TGACATGTGGCC-AAATGGACTATTATGCCT-TCATACCATAATTATG-AAAATAC-CCTTCTCT
* *** * * * *
7413205 TGTAATTACTTGGTTAAA-AATCTCCTATGAAATTACCAAAATACC---T-ACTACATGATAAGA
62 TATAATTA-TTTACTAAATAATCCCCTATGAAATTACCAAAATGCCTTTTCATTATATGATAAGA
*
7413265 AGT
126 AAT
* * ** * *
7413268 TAACATGTGGCCAAATGAACTATTATGCCATT-ATACCATAATTACAAAAAAAAACCTTCTCTTA
1 TGACATGTGGCCAAATGGACTATTATGCC-TTCATACCATAATTA-TGAAAATACCCTTCTCTTA
* ** *
7413332 TAATTATTTACAAAATAAT-CCCTCAAAAAATTACTAAAATGCCATTTTCATTATATGATAAGAA
64 TAATTATTTACTAAATAATCCCCT-ATGAAATTACCAAAATGCC-TTTTCATTATATGATAAGAA
7413396 AT
127 AT
* * * * *
7413398 TGACATATGGCCAAATGGTCTATTATACCCTCATACCATAATTA-CAAAGATACCCATTCTCTTA
1 TGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAA-ATACCC-TTCTCTTA
* * * * *
7413462 TAATTATTTACTAAATAAT-CCTTAAGGAAATTA-C-AAATGCCATTTCCATTATATTATATGAA
64 TAATTATTTACTAAATAATCCCCT-ATGAAATTACCAAAATGCC-TTTTCATTATATGATAAGAA
7413524 AT
127 AT
* * *** * ** * * * * *
7413526 TTACAAGTGGTTGAATTGACTATTACACCCTCATATCATAATTA-CAAAAGTAACCTTTCTATTA
1 TGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAA-T-ACCCTTCTCTTA
**** ** ** * *
7413590 TAATTATTTACTAAATAATTATTTATGAAATTATTAAAATGCCTTTTACATTGCATAAGAAGAAA
64 TAATTATTTACTAAATAATCCCCTATGAAATTACCAAAATGCCTTTT-CATTATATGATAAGAAA
7413655 T
128 T
* * * * ** *
7413656 TGACCTGTGGGCAAATGGACTATTAT-TCTCTCATACCATAATAACAAAAAAACCCCTTCGT-TT
1 TGACATGTGGCCAAATGGACTATTATGCCT-TCATACCATAATTATGAAAATA-CCCTTC-TCTT
7413719 ATAATTA-TTACTAAA
63 ATAATTATTTACTAAA
7413734 GAACCCTTAT
Statistics
Matches: 2390, Mismatches: 538, Indels: 229
0.76 0.17 0.07
Matches are distributed among these distances:
124 37 0.02
125 50 0.02
126 57 0.02
127 43 0.02
128 500 0.21
129 828 0.35
130 828 0.35
131 46 0.02
132 1 0.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (128 bp):
TGACATGTGGCCAAATGGACTATTATGCCTTCATACCATAATTATGAAAATACCCTTCTCTTATA
ATTATTTACTAAATAATCCCCTATGAAATTACCAAAATGCCTTTTCATTATATGATAAGAAAT
Found at i:7412439 original size:645 final size:643
Alignment explanation
Indices: 7410627--7413770 Score: 2696
Period size: 645 Copynumber: 4.9 Consensus size: 643
7410617 CTTCTCTTAC
* ** * * * * * * *
7410627 AATTATTTACTAAATAATCTTATAAAAAATTAGCAAAATGCCATTTCCAATATATGATAAGAAAT
1 AATTATTTGCTAAATAATCTCCTATAAAATTACCAAAATACCTTTTCTATTATATGATAAGAAGT
** * ** ** ** * * * *
7410692 TGTTATGTGACTGAATCAACTATTACACCATTATATCATAATTACAAAAATATCCTTT-TTCTTG
66 TGACATGTGGCCAAATGGACTATTATGCCATCATACCATAATTACGAAAATA-CCTTTCTT-TTA
* * * * * * *
7410756 TAATTATTCAGTAAATAATCCCTTATGAAAA-TACCAAAATACTC-TTTCAATTATATGATAAGA
129 TAATAATTTACTAAATAATCCCTCA--AAAATTACTAAAATGC-CATTTCCATTATATGATAAGA
* * * * * * * ** * *
7410819 AAATAACATGTGGTCAAATGGGCTATTATGCCTTTATATCATAATTATGAAAATACCCCA-TCTC
191 AATTGACATGTGGCCAAATGGTCTATTATGCCCTCATACCATAATTACAAAAATA-CTCATTTTC
* * * ** * * * * *
7410883 TTATAAATATTTACTAAA-AAGCCCCAATGAAATTAGCAAAATACCATTTTCGTTATATGATACG
255 TTATAATTATTTACTAAATAATCTCTTATAAAATTACCAAAATACCATTTACATTATATGATAAG
* * * * ** ** * * *
7410947 AAACTGACATGTGACTAAAAGGACTATTACACACTCATACCATAATTA-CAAAATACCCTTTCTC
320 AAATTGACATGTGGCTAAATGAACTACCATGC-CACATACCTTAATTATGAAAATA-CCTTTCTC
* * * *
7411011 TCATAATTATTTACAAAATAATCCAT-TAAGAAATTACTAAAATGCCTTTTC-CATTATATG-TA
383 TTATAATTATTTACTAAATAATCC-TCTATGAAATTACCAAAATGCC-TTTCACATTATATGATA
* * * * * *
7411073 AGAAATTG-CATGAGGTCAATTAGACT-TT-T-ATTTATCAATCACATAATTACGAAAAT-ACCC
446 AGAAATTGACATGTGGCCAAATGGACTATTATGCTTTAT-AAT--CATAATTACGAAAATAACCT
* ** *
7411133 TTTTTTATAATTATTTACTAAATAATCC-CTCAAAAAATTA--GTAAACTACCAGTTCCATTATA
508 TTTTTTATAATTATTTACTAAATAATCCTCT-ATAAAATTATCG-AAA-TACCCTTTCTATTATA
* * * ** * * * *
7411195 TGATAAGAAGTTAACATATTGCCAAATGGACTATTATGCTTTTATACCATAATTACGAAAATA--
570 TGATAAAAAATTGACAT-GCGCCAAATGGACTATTAT-CTCTCATATCATAATTAGGAAAATATT
*
7411258 CACTTTCTCTTAT
633 C-CTTT-TCTTGT
** * * * *
7411271 AATTATTAACTAAATAATC-CC-ACAAGAAATTACTAAAATACCCTTTCTATTATATGATGAGAA
1 AATTATTTGCTAAATAATCTCCTA-TA-AAATTACCAAAATACCTTTTCTATTATATGATAAGAA
* * * * * * * *
7411334 ATTGATATGTGGTCAAAAGGACTATTATGCCGTCATACCA-ATGTTATGATAATACCCTTTCTTT
64 GTTGACATGTGGCCAAATGGACTATTATGCCATCATACCATA-ATTACGAAAATA-CCTTTCTTT
* ** *
7411398 TATAATTATTTACTAAATAATTTCTCAAGAAATTACTAAAATGCC-TTATCCATTATATGGTAAG
127 TATAATAATTTACTAAATAATCCCTCAA-AAATTACTAAAATGCCATT-TCCATTATATGATAAG
* * * ** *
7411462 AAATTTACATGT-GCCTAAATAGAC-ATTATGCCCTCATACCATAATTACAAATGTATTC-TTTC
190 AAATTGACATGTGGCC-AAATGGTCTATTATGCCCTCATACCATAATTACAAAAATACTCATTT-
* *
7411524 TCTTATAATTATTTACTAAATAATCTCTTATGAAATTACAAAAATGACC-TTTACATTATATGAT
253 TCTTATAATTATTTACTAAATAATCTCTTATAAAATTACCAAAAT-ACCATTTACATTATATGAT
* * ** * * *
7411588 AAGATATTGACATGTGGCCAAAT-AGACTACTGTGCCATTATACCTTAATTATAAAAATACCATT
317 AAGAAATTGACATGTGGCTAAATGA-ACTACCATGCCA-CATACCTTAATTATGAAAATACCTTT
* * *
7411652 CTTTTATAATTATTTGCTAAATAATCCCCTATGAAATTACCAAAATGCCTTTCACATTATATGAT
380 CTCTTATAATTATTTACTAAATAATCCTCTATGAAATTACCAAAATGCCTTTCACATTATATGAT
* * * * * *
7411717 AAGAAATTGACATGTAGCCAAATGGCCTGTTATGCCTTGAT-ATCTTAATTAGGAAAATAACCAT
445 AAGAAATTGACATGTGGCCAAATGGACTATTATG-CTTTATAATCATAATTACGAAAATAACC-T
* * * * *
7411781 TTTCTTATAATTATTTATTAAATAATCCTCTATGAAATTATCGAAATACCCTTTATGTTATATGA
508 TTTTTTATAATTATTTACTAAATAATCCTCTATAAAATTATCGAAATACCCTTTCTATTATATGA
* *
7411846 TAAGAAATTGACATGCGCCTAAATGGACTATTATCACTCATATCATAATTAGGAAAATATTCCTT
573 TAAAAAATTGACATGCGCC-AAATGGACTATTATCTCTCATATCATAATTAGGAAAATATTCCTT
7411911 TT-TTAGT
637 TTCTT-GT
* * *
7411918 AGTTATTTGCTAAATATTCTCCTATAAAATTACCAAAATACTTTTTCTATTATATGATAAGAAGT
1 AATTATTTGCTAAATAATCTCCTATAAAATTACCAAAATACCTTTTCTATTATATGATAAGAAGT
* *
7411983 TGACATGTGGCCAAATGGACTATTATGTCC-TTATACCATAATTACGAAAATACCTTTCTTTTAC
66 TGACATGTGGCCAAATGGACTATTATG-CCATCATACCATAATTACGAAAATACCTTTCTTTTAT
* ** * * *
7412047 AGTCAATTT-CTAAATAATCTTTTAAAAAGTTATTAAAATGCCATTTCCATTATATGATAAGCAA
130 AAT-AATTTACTAAATAATCCCTCAAAAA-TTACTAAAATGCCATTTCCATTATATGATAAGAAA
* ** * *
7412111 TTGACATGTGTCGTATTGGTCTATTATGCCCTCATACCATAATTATAAAAATACTC-TTTTCTTA
193 TTGACATGTGGCCAAATGGTCTATTATGCCCTCATACCATAATTACAAAAATACTCATTTTCTTA
* * * *
7412175 TAATTATTTATTTAATAATCTCTTTTAAAATTACCAAAATACCATTTACATTTTATGATAAGAAA
258 TAATTATTTACTAAATAATCTCTTATAAAATTACCAAAATACCATTTACATTATATGATAAGAAA
* * *
7412240 TTGACATTTGGCTAAATGAACTACCATGCCACATATCGTAATTATGAAAATACCTTTCTCTTATA
323 TTGACATGTGGCTAAATGAACTACCATGCCACATACCTTAATTATGAAAATACCTTTCTCTTATA
* * *
7412305 ATTATTTTCTAAATAATCTTGTATGAAATTACCAAAATGCCTTTCACATTATATGATAAGAAATT
388 ATTATTTACTAAATAATCCTCTATGAAATTACCAAAATGCCTTTCACATTATATGATAAGAAATT
* * * * *
7412370 GACATGTGGCCAATTGGACTATTATG-TTTCCAT-ATCTTAATTATGAAAATAGCCTTTCTTTTC
453 GACATGTGGCCAAATGGACTATTATGCTTT--ATAATCATAATTACGAAAATAACCTTT-TTTTA
* * * * * **
7412433 TAATTATGTACTAAATGACCCTCTATGAAATTATTGAAATACATTTTCTATTATATGATAAAAAA
515 TAATTATTTACTAAATAATCCTCTATAAAATTATCGAAATACCCTTTCTATTATATGATAAAAAA
* * * * *
7412498 TTGACATGCATCCAAATGGACTATTATCCCTAATATCATAATTAGGAAAATACTCATTTTCTTGT
580 TTGACATGC-GCCAAATGGACTATTATCTCTCATATCATAATTAGGAAAATATTCCTTTTCTTGT
* * * * * *
7412563 AGTTATTTGCTAAATATTCTCCTATGAAGTTACCAAAATGCCCTTTTCTATTATATGATAAGAAC
1 AATTATTTGCTAAATAATCTCCTATAAAATTACCAAAAT-ACCTTTTCTATTATATGATAAGAAG
* * * * * *
7412628 TTCATATGTGGCCCAATGGACTATTATGCCCTCATACCATAATTACGAAAATACATTTCTCTTAT
65 TTGACATGTGGCCAAATGGACTATTATGCCATCATACCATAATTACGAAAATACCTTTCTTTTAT
* * * * *
7412693 AATTATTTTCTAAATAATCCCTCAAAAATTACTAAAATGCCCTTTTCATTATATGATAAGCAATT
130 AATAATTTACTAAATAATCCCTCAAAAATTACTAAAATGCCATTTCCATTATATGATAAGAAATT
* * *
7412758 GACATGTGGCCAAATGGTCTGTTATGCCTTCATATCATAATTACAAAAATAC-CATTCTT-TTAT
195 GACATGTGGCCAAATGGTCTATTATGCCCTCATACCATAATTACAAAAATACTCATT-TTCTTAT
* * * * *
7412821 AATTATTTACTAAATAATCCCTTATGAAATTACCAAAATGCCTTTTACATTATACGATAAGAAAT
259 AATTATTTACTAAATAATCTCTTATAAAATTACCAAAATACCATTTACATTATATGATAAGAAAT
* * ** ** * * * *
7412886 TGACATTTGGCTAAACGAACTATTATGCCTTTATACCTTGATTATGAAAATGCCCTTCTGTTATA
324 TGACATGTGGCTAAATGAACTACCATGCC-ACATACCTTAATTATGAAAATACCTTTCTCTTATA
* * * * *** *
7412951 ATT-TTTACTAAATAATCCCCTATGTAGTAACCAAAATGCCTAAGACATTATATGATTAGAAATT
388 ATTATTTACTAAATAATCCTCTATGAAATTACCAAAATGCCTTTCACATTATATGATAAGAAATT
* *
7413015 GACATGTGGCCAAATGGATTATTATGCCTTTATAAT-ATAATTACAAAAATAACCTTTTTCTTAT
453 GACATGTGGCCAAATGGACTATTATG-CTTTATAATCATAATTACGAAAATAACCTTTTT-TTAT
* * * *
7413079 AATTATTTACTAAATAATCTTTTATAAAATTATCAAAATACCCTTTCTATTATATGGTAAAAAAT
516 AATTATTTACTAAATAATCCTCTATAAAATTATCGAAATACCCTTTCTATTATATGATAAAAAAT
** * * *
7413144 TGACATTTGCCTAAATGGACTATTCTCTCTCATATCATAATTAGAAAAATACTT-CTTCTCTTGT
581 TGACATGCGCC-AAATGGACTATTATCTCTCATATCATAATTAGGAAAATA-TTCCTTTTCTTGT
* * * * *
7413208 AATTACTTGGTTAAA-AATCTCCTATGAAATTACCAAAATA-C----CTACTACATGATAAGAAG
1 AATTA-TTTGCTAAATAATCTCCTATAAAATTACCAAAATACCTTTTCTATTATATGATAAGAAG
* * * * * *
7413267 TTAACATGTGGCCAAATGAACTATTATGCCATTATACCATAATTACAAAAAAAAACC-TTCTCTT
65 TTGACATGTGGCCAAATGGACTATTATGCCATCATACCATAATTAC--GAAAATACCTTTCTTTT
* * *
7413331 ATAATTATTTACAAAATAATCCCTCAAAAAATTACTAAAATGCCATTTTCATTATATGATAAGAA
128 ATAATAATTTACTAAATAATCCCTC-AAAAATTACTAAAATGCCATTTCCATTATATGATAAGAA
* * * * *
7413396 ATTGACATATGGCCAAATGGTCTATTATACCCTCATACCATAATTACAAAGATACCCATTCTCTT
192 ATTGACATGTGGCCAAATGGTCTATTATGCCCTCATACCATAATTACAAAAATACTCATTTTCTT
* * * *
7413461 ATAATTATTTACTAAATAATC-CTTA-AGGAAATTA-C-AAATGCCATTTCCATTATATTATATG
257 ATAATTATTTACTAAATAATCTCTTATA--AAATTACCAAAATACCATTTACATTATATGATAAG
* * * * * * * * * *
7413522 AAATTTACAAGTGGTTGAATTG-ACTATTACA-CCCTCATATCATAATTA-CAAAAGTAACCTTT
320 AAATTGACATGTGGCT-AAATGAACTA--CCATGCCACATACCTTAATTATGAAAA-T-ACCTTT
* ** * ** * ** * *
7413584 CTATTATAATTATTTACTAAATAATTATTTATGAAATTATTAAAATGCCTTTTACATTGCATAAG
380 CTCTTATAATTATTTACTAAATAATCCTCTATGAAATTACCAAAATGCCTTTCACATTATATGAT
* * * * * * *
7413649 AAGAAATTGACCTGTGGGCAAATGGACTATTATTCTCTCAT-ACCATAATAAC-AAAAAAACCCC
445 AAGAAATTGACATGTGGCCAAATGGACTATTATGCT-TTATAATCATAATTACGAAAATAA--CC
** * * * * * *
7413712 TTCGTTTATAATTA-TTACTAAAGAACCCT-TATTAAATTGTCAAAATACCCTTTCCATTA
507 TTTTTTTATAATTATTTACTAAATAATCCTCTATAAAATTATCGAAATACCCTTTCTATTA
7413771 ATAATATATG
Statistics
Matches: 2053, Mismatches: 369, Indels: 160
0.80 0.14 0.06
Matches are distributed among these distances:
639 59 0.03
640 105 0.05
641 138 0.07
642 123 0.06
643 67 0.03
644 276 0.13
645 705 0.34
646 319 0.16
647 163 0.08
648 86 0.04
649 7 0.00
650 5 0.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (643 bp):
AATTATTTGCTAAATAATCTCCTATAAAATTACCAAAATACCTTTTCTATTATATGATAAGAAGT
TGACATGTGGCCAAATGGACTATTATGCCATCATACCATAATTACGAAAATACCTTTCTTTTATA
ATAATTTACTAAATAATCCCTCAAAAATTACTAAAATGCCATTTCCATTATATGATAAGAAATTG
ACATGTGGCCAAATGGTCTATTATGCCCTCATACCATAATTACAAAAATACTCATTTTCTTATAA
TTATTTACTAAATAATCTCTTATAAAATTACCAAAATACCATTTACATTATATGATAAGAAATTG
ACATGTGGCTAAATGAACTACCATGCCACATACCTTAATTATGAAAATACCTTTCTCTTATAATT
ATTTACTAAATAATCCTCTATGAAATTACCAAAATGCCTTTCACATTATATGATAAGAAATTGAC
ATGTGGCCAAATGGACTATTATGCTTTATAATCATAATTACGAAAATAACCTTTTTTTATAATTA
TTTACTAAATAATCCTCTATAAAATTATCGAAATACCCTTTCTATTATATGATAAAAAATTGACA
TGCGCCAAATGGACTATTATCTCTCATATCATAATTAGGAAAATATTCCTTTTCTTGT
Found at i:7414013 original size:130 final size:128
Alignment explanation
Indices: 7413875--7414306 Score: 455
Period size: 127 Copynumber: 3.4 Consensus size: 128
7413865 CCTTTATATT
7413875 ATAATTATGAAAATACGCATTCTCTTATAATTATTTACTAAATAATCATATAAAAAATTACCAAA
1 ATAATTATGAAAATAC-CATTCTCTTATAATTATTTACTAAATAATCAT-TAAAAAATTACCAAA
* *
7413940 ATGTCATTTTCATTATATGATAAAAAATTGACATA-AGGCCAAAA-GGATTATGATGCCCTCATA
64 ATGTCATTTTCATTATATGATAAGAAATTGACATATA-G-CAAAATGGACTATGATGCCCTCATA
7414003 CC
127 CC
** * *
7414005 ATAATTATGAATGTACTCATTCTCTTATAATTATTTAATAAATAATCACTT-TAAAATTACCAAA
1 ATAATTATGAAAATAC-CATTCTCTTATAATTATTTACTAAATAATCA-TTAAAAAATTACCAAA
* * * * *
7414069 AT-TCCCTTTCCATTATATGATAAGAAATTCACATATAGCAAAATGGACTATTATGCCTTCATAC
64 ATGT-CATTTTCATTATATGATAAGAAATTGACATATAGCAAAATGGACTATGATGCCCTCATAC
7414133 C
128 C
* * **
7414134 ATAATTATAAAAATACC-TTCTCTTATAATTATTTACTAAATAATCTTTAAGGAATTACCAAAAT
1 ATAATTATGAAAATACCATTCTCTTATAATTATTTACTAAATAATCATTAAAAAATTACCAAAAT
* * * * * * * ** * **
7414198 GCCATGTTCATTATATAATAAGAAATTGA-GTTTTGCCCAAATTAACTATTATGATCTCATACC
66 GTCATTTTCATTATATGATAAGAAATTGACATATAG-CAAAATGGACTATGATGCCCTCATACC
** * *
7414261 ATAATTACAAAAATACCTTTCTCTTATAATTGTTGT-CTAAATAATC
1 ATAATTATGAAAATACCATTCTCTTATAATTATT-TACTAAATAATC
7414307 CCCTATGATA
Statistics
Matches: 256, Mismatches: 37, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
126 5 0.02
127 98 0.38
128 32 0.12
129 74 0.29
130 46 0.18
131 1 0.00
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.37
Consensus pattern (128 bp):
ATAATTATGAAAATACCATTCTCTTATAATTATTTACTAAATAATCATTAAAAAATTACCAAAAT
GTCATTTTCATTATATGATAAGAAATTGACATATAGCAAAATGGACTATGATGCCCTCATACC
Found at i:7414619 original size:356 final size:355
Alignment explanation
Indices: 7413998--7414669 Score: 767
Period size: 356 Copynumber: 1.9 Consensus size: 355
7413988 TATGATGCCC
**
7413998 TCATACCATAATTATGAATGTACTCATTCTCTTATAATTATTTAATAAATAATCACTTTAAAATT
1 TCATACCATAATTATGAAAATACTCATTCTCTTATAATTATTTAATAAATAATCACTTTAAAATT
*
7414063 ACCAAAATTCCCTTTCCATTATATGATAAGAAATTCACATATAGCAAAATGGACTATTATGCCTT
66 ACCAAAATTCCCTTTCCATTATATGATAAGAAATTCACATATAGCAAAATGGACTACTATGCCTT
*
7414128 CATACCATAATTATAAAAATACCTTCTCTTATAATTATTTACTAAATAATCTTTAAGGAATTACC
131 CATACCATAATTATAAAAATACCTTCTCTTATAATTATTTACTAAATAATCTTTAAGAAATTACC
* ** ** * *
7414193 AAAATGCCATGTTCATTATATAATAAGAAATTGAGTTTTGCCCAAATTAACTATTATGATCTCAT
196 AAAATACCATGTTCATTATATAATAAGAAATTGACATACGACCAAATGAACTATTATGATCTCAT
* * *
7414258 ACCATAATTACAAAAATACCTTTCTCTTATAATTGTTGT-CTAAATAATCCCCTATGATAGGAAA
261 ACCATAATTACAAAAATAACTTTCTCTTATAATTATT-TACTAAATAATCACCTATGATAGGAAA
7414322 TAGACATGCAGCCAAATGAAATAATTCACCT
325 TAGACATGCAGCCAAATGAAATAATTCACCT
* * * **
7414353 TCATACTATAATTATGAAAATACTCATTCTTTTATAATTATTT-CTAAAATAATCTTTTGTAAAA
1 TCATACCATAATTATGAAAATACTCATTCTCTTATAATTATTTAAT-AAATAATCACTT-TAAAA
* * * * * *
7414417 TTACCAAAATAT-CCTTTCCATTATATGATAATAAGTT-ACATGTGGCCAAATTGACTACTATGC
64 TTACCAAAAT-TCCCTTTCCATTATATGATAAGAAATTCACATATAGCAAAATGGACTACTATG-
* ** * **
7414480 CCTT-ATGCCA-AGATTA-CGAAATACCACTTCTTTTATAATTATTTGTTAAATAATCTTTTATA
127 CCTTCATACCATA-ATTATAAAAATA-C-CTTCTCTTATAATTATTTACTAAATAATC-TTTA-A
* ** *
7414542 -AAATTACCATAATACCAT-TTGCATTATATGGTAA-AAAGTT-ACCATACGACCAAATGGACTA
187 GAAATTACCAAAATACCATGTT-CATTATATAATAAGAAA-TTGA-CATACGACCAAATGAACTA
* * ** *
7414603 -TAT-ACTTTCTTACCATAATTATGAAAATAACTTTTTCTTATAATTATTTACTAAATAATCACC
249 TTATGA-TCTCATACCATAATTACAAAAATAACTTTCTCTTATAATTATTTACTAAATAATCACC
7414666 TATG
313 TATG
7414670 GAATTACCAA
Statistics
Matches: 263, Mismatches: 40, Indels: 27
0.80 0.12 0.08
Matches are distributed among these distances:
354 7 0.03
355 81 0.31
356 129 0.49
357 45 0.17
358 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.38
Consensus pattern (355 bp):
TCATACCATAATTATGAAAATACTCATTCTCTTATAATTATTTAATAAATAATCACTTTAAAATT
ACCAAAATTCCCTTTCCATTATATGATAAGAAATTCACATATAGCAAAATGGACTACTATGCCTT
CATACCATAATTATAAAAATACCTTCTCTTATAATTATTTACTAAATAATCTTTAAGAAATTACC
AAAATACCATGTTCATTATATAATAAGAAATTGACATACGACCAAATGAACTATTATGATCTCAT
ACCATAATTACAAAAATAACTTTCTCTTATAATTATTTACTAAATAATCACCTATGATAGGAAAT
AGACATGCAGCCAAATGAAATAATTCACCT
Found at i:7414798 original size:130 final size:130
Alignment explanation
Indices: 7414353--7414885 Score: 418
Period size: 128 Copynumber: 4.1 Consensus size: 130
7414343 TAATTCACCT
* * * * * * *** * *
7414353 TCATACTATAATTATGAAAATACTCATTCTTTTATAATTATTT-CTAAAATAATCTTTTGTAAAA
1 TCATACCATAATTATGAAAATGCCCCTGCTCTTATAATTATTTACT-AAATAATCACCTATGAAA
* * * * * * *
7414417 TTACCAAAATATCCTTTCCATTATATGATAATAAGTT-ACATGTGGCCAAATTG-ACTACTATGC
65 TTACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATATGTCCAAA-TGAACAATTATGC
7414480 CC
129 CC
* * * * * * * ** *** *
7414482 TTATGCCA-AGATTACG-AAATACCACTTCTTTTATAATTATTTGTTAAATAATCTTTTATAAAA
1 TCATACCATA-ATTATGAAAATGCCCCTGCTCTTATAATTATTTACTAAATAATCACCTATGAAA
* * * * * * * * *
7414545 TTACCATAATACCATTTGCATTATATGGTAA-AAAGTT-ACCATACGACCAAATGGACTA-TATA
65 TTACCAAAATACCCTTTCCATTATATGATAAGAAA-TTGA-CATATGTCCAAATGAACAATTATG
**
7414607 CTT
128 CCC
* ** * ** *
7414610 TCTTACCATAATTATGAAAAT-AACTTTTTCTTATAATTATTTACTAAATAATCACCTATGGAAT
1 TCATACCATAATTATGAAAATGCCCCTGCTCTTATAATTATTTACTAAATAATCACCTATGAAAT
* ** * * * *
7414674 TACCAAAATGCTTTTTCCATTATATGATAAGAAATTGATATGTGTCCAAATTAACTATTATGCCC
66 TACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATATGTCCAAATGAACAATTATGCCC
*
7414739 TCATACCATAATTATGAAAATGCCCCTGCTCTTATAATTATTTACTAAATAATCCCCTATGAAAT
1 TCATACCATAATTATGAAAATGCCCCTGCTCTTATAATTATTTACTAAATAATCACCTATGAAAT
* *
7414804 TAGCAAAATACCCTTTCCATTATGTGATAAGAAATTGACATATGTCCAAATGAACAATTATGCCC
66 TACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATATGTCCAAATGAACAATTATGCCC
*
7414869 TCATATCATAATTATGA
1 TCATACCATAATTATGA
7414886 CAATAATCCT
Statistics
Matches: 322, Mismatches: 71, Indels: 21
0.78 0.17 0.05
Matches are distributed among these distances:
127 2 0.01
128 155 0.48
129 57 0.18
130 108 0.34
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (130 bp):
TCATACCATAATTATGAAAATGCCCCTGCTCTTATAATTATTTACTAAATAATCACCTATGAAAT
TACCAAAATACCCTTTCCATTATATGATAAGAAATTGACATATGTCCAAATGAACAATTATGCCC
Found at i:7427587 original size:149 final size:149
Alignment explanation
Indices: 7427317--7427614 Score: 596
Period size: 149 Copynumber: 2.0 Consensus size: 149
7427307 TAAACTTATC
7427317 CCCCTATAGCCGAACCTATGCCTATAAATAAGCAAGGCCATTCATGTTTCATCATCGCTCACTTC
1 CCCCTATAGCCGAACCTATGCCTATAAATAAGCAAGGCCATTCATGTTTCATCATCGCTCACTTC
7427382 TCCTTTTTTTCTTTCTTATTTATTTAATTTTATTTATTTTAGTTATTGGCTTACCTGACAGATTT
66 TCCTTTTTTTCTTTCTTATTTATTTAATTTTATTTATTTTAGTTATTGGCTTACCTGACAGATTT
7427447 GCCAATAACAAAAGCTTTG
131 GCCAATAACAAAAGCTTTG
7427466 CCCCTATAGCCGAACCTATGCCTATAAATAAGCAAGGCCATTCATGTTTCATCATCGCTCACTTC
1 CCCCTATAGCCGAACCTATGCCTATAAATAAGCAAGGCCATTCATGTTTCATCATCGCTCACTTC
7427531 TCCTTTTTTTCTTTCTTATTTATTTAATTTTATTTATTTTAGTTATTGGCTTACCTGACAGATTT
66 TCCTTTTTTTCTTTCTTATTTATTTAATTTTATTTATTTTAGTTATTGGCTTACCTGACAGATTT
7427596 GCCAATAACAAAAGCTTTG
131 GCCAATAACAAAAGCTTTG
7427615 TTTCTTTAAA
Statistics
Matches: 149, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
149 149 1.00
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.42
Consensus pattern (149 bp):
CCCCTATAGCCGAACCTATGCCTATAAATAAGCAAGGCCATTCATGTTTCATCATCGCTCACTTC
TCCTTTTTTTCTTTCTTATTTATTTAATTTTATTTATTTTAGTTATTGGCTTACCTGACAGATTT
GCCAATAACAAAAGCTTTG
Found at i:7429196 original size:55 final size:55
Alignment explanation
Indices: 7429117--7429239 Score: 165
Period size: 55 Copynumber: 2.2 Consensus size: 55
7429107 TCACTTAGAT
* * * * * *
7429117 AAAAGAATCTTACTTGTATTATGATTCTTGAACACCTTTTGCTATCCCATTTAGA
1 AAAAGAATCCTACTTGCATTATGATTCTTAAACACATTTGGCTATCCCATTTAAA
* * *
7429172 AGAGGAATCCTACTTGCATTATGATTCTTAAACACATTTGGCTATCCTATTTAAA
1 AAAAGAATCCTACTTGCATTATGATTCTTAAACACATTTGGCTATCCCATTTAAA
7429227 AAAAGAATCCTAC
1 AAAAGAATCCTAC
7429240 AAGCAATTAA
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (55 bp):
AAAAGAATCCTACTTGCATTATGATTCTTAAACACATTTGGCTATCCCATTTAAA
Found at i:7429955 original size:21 final size:21
Alignment explanation
Indices: 7429931--7429977 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
7429921 GTTTACAATA
*
7429931 TTTCTTTTAGTTTTGAGAATC
1 TTTCTTTCAGTTTTGAGAATC
7429952 TTTCTTTCAGTTTTGAGAATC
1 TTTCTTTCAGTTTTGAGAATC
7429973 TTTCT
1 TTTCT
7429978 ATTAAAGCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.17, C:0.13, G:0.13, T:0.57
Consensus pattern (21 bp):
TTTCTTTCAGTTTTGAGAATC
Found at i:7442240 original size:3 final size:3
Alignment explanation
Indices: 7442234--7442280 Score: 76
Period size: 3 Copynumber: 15.7 Consensus size: 3
7442224 TTTATTATTA
* *
7442234 TTG TTG TTG TTG TTG TTG TTG TTA TTG TTG TTA TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
7442281 CTTATTATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.04, C:0.00, G:0.28, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:7442288 original size:3 final size:3
Alignment explanation
Indices: 7442282--7442357 Score: 102
Period size: 3 Copynumber: 25.7 Consensus size: 3
7442272 GTTGTTGTTC
7442282 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
7442329 TAA TCTT TTA TTA TT- TTA TTT TTA TTA TT
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TT
7442358 TAATATTTAA
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
2 3 0.05
3 60 0.94
4 1 0.02
ACGTcount: A:0.29, C:0.01, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:7442373 original size:29 final size:29
Alignment explanation
Indices: 7442285--7442373 Score: 90
Period size: 29 Copynumber: 3.0 Consensus size: 29
7442275 GTTGTTCTTA
* * *
7442285 TTATTATTATTA-TTATTATTATTATTATT
1 TTATTATTATTATTTAATATT-TAATAATT
* * *
7442314 ATTATTATTATTATTTAATCTTTTATTATT
1 -TTATTATTATTATTTAATATTTAATAATT
*
7442344 TTATTTTTATTATTTAATATTTAATAATT
1 TTATTATTATTATTTAATATTTAATAATT
7442373 T
1 T
7442374 CTCAACATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
29 26 0.50
30 20 0.38
31 6 0.12
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.67
Consensus pattern (29 bp):
TTATTATTATTATTTAATATTTAATAATT
Found at i:7442881 original size:57 final size:55
Alignment explanation
Indices: 7442803--7442912 Score: 132
Period size: 57 Copynumber: 2.0 Consensus size: 55
7442793 TTGAATAGAC
* *
7442803 AAACTTTCAATAAACAAAAATACCCAACGTGCAGGAGAAAACAAAACAGAAGCAATG
1 AAACTTACAATAAACAAAAATAACCAACGTGCA-GA-AAAACAAAACAGAAGCAATG
* * * *
7442860 AAACTTACAATGAAA-AGAAATAATCAACGTGCAGAAAAACGAACCAGAAGCAA
1 AAACTTACAAT-AAACAAAAATAACCAACGTGCAGAAAAACAAAACAGAAGCAA
7442913 AGAATGAGTT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
55 16 0.35
56 2 0.04
57 25 0.54
58 3 0.07
ACGTcount: A:0.55, C:0.18, G:0.15, T:0.12
Consensus pattern (55 bp):
AAACTTACAATAAACAAAAATAACCAACGTGCAGAAAAACAAAACAGAAGCAATG
Found at i:7444080 original size:7 final size:7
Alignment explanation
Indices: 7444063--7444164 Score: 61
Period size: 7 Copynumber: 13.9 Consensus size: 7
7444053 TATTTTTAAT
7444063 TATTCTTA
1 TATT-TTA
7444071 TATTTTA
1 TATTTTA
7444078 TATTTTATA
1 TA-TTT-TA
7444087 TATTTTA
1 TATTTTA
7444094 TATATTCTA
1 TAT-TT-TA
7444103 TATTTTTA
1 TA-TTTTA
7444111 TATTTT-
1 TATTTTA
7444117 TATCTTTA
1 TAT-TTTA
*
7444125 TTATTTTT
1 -TATTTTA
*
7444133 TA-TATA
1 TATTTTA
7444139 TATTTT-
1 TATTTTA
7444145 TAGTTATTA
1 TA-TT-TTA
7444154 T-TTTT-
1 TATTTTA
7444159 TATTTT
1 TATTTT
7444165 TCGTTTAATG
Statistics
Matches: 77, Mismatches: 4, Indels: 28
0.71 0.04 0.26
Matches are distributed among these distances:
5 1 0.01
6 15 0.19
7 25 0.32
8 21 0.27
9 14 0.18
10 1 0.01
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.71
Consensus pattern (7 bp):
TATTTTA
Found at i:7444090 original size:9 final size:8
Alignment explanation
Indices: 7444053--7444137 Score: 77
Period size: 8 Copynumber: 10.4 Consensus size: 8
7444043 TATCTTTAAT
7444053 TATTTTTAA
1 TATTTTT-A
*
7444062 TTATTCTTA
1 -TATTTTTA
7444071 TA-TTTTA
1 TATTTTTA
7444078 TA-TTTTA
1 TATTTTTA
7444085 TATATTTTA
1 TAT-TTTTA
*
7444094 TATATTCTA
1 TAT-TTTTA
7444103 TATTTTTA
1 TATTTTTA
7444111 TATTTTTA
1 TATTTTTA
*
7444119 TCTTTATTA
1 TATTT-TTA
7444128 T-TTTTTA
1 TATTTTTA
7444135 TAT
1 TAT
7444138 ATATTTTTAG
Statistics
Matches: 66, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
7 17 0.26
8 22 0.33
9 21 0.32
10 6 0.09
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (8 bp):
TATTTTTA
Found at i:7444138 original size:26 final size:26
Alignment explanation
Indices: 7444027--7444161 Score: 97
Period size: 26 Copynumber: 5.2 Consensus size: 26
7444017 TTATTATAAA
7444027 TTTATATATCTTTTAATATCTTTAATTATTT
1 TTTATATAT-TTTT-ATA--TTT-ATTATTT
* * *
7444058 TTAAT-TATTCTTATA-TT-TTATAT
1 TTTATATATTTTTATATTTATTATTT
7444081 TTTATATATTTTATATATTCTA-TA--T
1 TTTATATATTTT-TATATT-TATTATTT
*
7444106 TTT-TATATTTTTATCTTTATTATTT
1 TTTATATATTTTTATATTTATTATTT
*
7444131 TTTATATATATTTT-TAGTTATTATTT
1 TTTATATAT-TTTTATATTTATTATTT
7444157 TTTAT
1 TTTAT
7444162 TTTTCGTTTA
Statistics
Matches: 86, Mismatches: 8, Indels: 25
0.72 0.07 0.21
Matches are distributed among these distances:
22 2 0.02
23 16 0.19
24 13 0.15
25 14 0.16
26 21 0.24
27 7 0.08
28 3 0.03
29 3 0.03
30 3 0.03
31 4 0.05
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.68
Consensus pattern (26 bp):
TTTATATATTTTTATATTTATTATTT
Found at i:7444165 original size:7 final size:7
Alignment explanation
Indices: 7444052--7444165 Score: 52
Period size: 7 Copynumber: 15.1 Consensus size: 7
7444042 ATATCTTTAA
7444052 TTATTTT
1 TTATTTT
*
7444059 TAATTATT
1 TTATT-TT
7444067 CTTATATTT
1 -TTAT-TTT
7444076 TATATTTT
1 T-TATTTT
7444084 ATATATTTT
1 -T-TATTTT
* *
7444093 ATATATT
1 TTATTTT
*
7444100 CTATATTT
1 TTAT-TTT
7444108 TTATATTT
1 TTAT-TTT
7444116 TTATCTTT
1 TTAT-TTT
7444124 ATTATTTT
1 -TTATTTT
*
7444132 TTA-TAT
1 TTATTTT
*
7444138 ATA-TTT
1 TTATTTT
* *
7444144 TTAGTTA
1 TTATTTT
7444151 TTATTTT
1 TTATTTT
7444158 TTATTTT
1 TTATTTT
7444165 T
1 T
7444166 CGTTTAATGG
Statistics
Matches: 84, Mismatches: 15, Indels: 16
0.73 0.13 0.14
Matches are distributed among these distances:
6 8 0.10
7 30 0.36
8 25 0.30
9 20 0.24
10 1 0.01
ACGTcount: A:0.25, C:0.03, G:0.01, T:0.71
Consensus pattern (7 bp):
TTATTTT
Found at i:7444496 original size:6 final size:6
Alignment explanation
Indices: 7444472--7444593 Score: 63
Period size: 6 Copynumber: 20.0 Consensus size: 6
7444462 CTAAAGCAAA
* * * * *
7444472 GTTTTT GTTTTAG GCTTTT GTTTTTT GTTTTTT GCTTCT -ATTTT GTTTTT
1 GTTTTT GTTTT-T GTTTTT G-TTTTT G-TTTTT GTTTTT GTTTTT GTTTTT
* * * *
7444522 GGTTTT -TTTTT G-TTTT GTTTTT GGTTTTG GTTTTG GTTTTT CTTTTT
1 GTTTTT GTTTTT GTTTTT GTTTTT -GTTTTT GTTTTT GTTTTT GTTTTT
* *
7444569 CTTTTCTT GTTGTT -TTTTT GTTTTT
1 -GTTT-TT GTTTTT GTTTTT GTTTTT
7444594 TCCTTAAGAC
Statistics
Matches: 89, Mismatches: 18, Indels: 18
0.71 0.14 0.14
Matches are distributed among these distances:
5 16 0.18
6 45 0.51
7 26 0.29
8 2 0.02
ACGTcount: A:0.02, C:0.05, G:0.17, T:0.76
Consensus pattern (6 bp):
GTTTTT
Found at i:7444515 original size:20 final size:20
Alignment explanation
Indices: 7444473--7444515 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
7444463 TAAAGCAAAG
* *
7444473 TTTTTGTTTTAGGCTTTTGT
1 TTTTTGTTTTAGGCTTCTAT
**
7444493 TTTTTGTTTTTTGCTTCTAT
1 TTTTTGTTTTAGGCTTCTAT
7444513 TTT
1 TTT
7444516 GTTTTTGGTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.05, C:0.07, G:0.14, T:0.74
Consensus pattern (20 bp):
TTTTTGTTTTAGGCTTCTAT
Found at i:7444522 original size:17 final size:17
Alignment explanation
Indices: 7444494--7444537 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
7444484 GGCTTTTGTT
7444494 TTTTGTTTTTTGCTTCTA
1 TTTTG-TTTTTGCTTCTA
* * *
7444512 TTTTGTTTTTGGTTTTT
1 TTTTGTTTTTGCTTCTA
7444529 TTTTGTTTT
1 TTTTGTTTT
7444538 GTTTTTGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.02, C:0.05, G:0.14, T:0.80
Consensus pattern (17 bp):
TTTTGTTTTTGCTTCTA
Found at i:7444527 original size:12 final size:12
Alignment explanation
Indices: 7444512--7444561 Score: 77
Period size: 12 Copynumber: 4.3 Consensus size: 12
7444502 TTTGCTTCTA
7444512 TTTTGTTTTTGG
1 TTTTGTTTTTGG
7444524 TTTT-TTTTT-G
1 TTTTGTTTTTGG
7444534 TTTTGTTTTTGG
1 TTTTGTTTTTGG
*
7444546 TTTTGGTTTTGG
1 TTTTGTTTTTGG
7444558 TTTT
1 TTTT
7444562 TCTTTTTCTT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
10 5 0.14
11 10 0.29
12 20 0.57
ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78
Consensus pattern (12 bp):
TTTTGTTTTTGG
Found at i:7444531 original size:28 final size:28
Alignment explanation
Indices: 7444499--7444555 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
7444489 TTGTTTTTTG
*
7444499 TTTTTTGCTTCT-ATTTTGTTTTTGGTTT
1 TTTTTTG-TTCTGATTTTGGTTTTGGTTT
* *
7444527 TTTTTTGTTTTGTTTTTGGTTTTGGTTT
1 TTTTTTGTTCTGATTTTGGTTTTGGTTT
7444555 T
1 T
7444556 GGTTTTTCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 3 0.12
28 22 0.88
ACGTcount: A:0.02, C:0.04, G:0.18, T:0.77
Consensus pattern (28 bp):
TTTTTTGTTCTGATTTTGGTTTTGGTTT
Found at i:7444594 original size:7 final size:7
Alignment explanation
Indices: 7444487--7444549 Score: 54
Period size: 7 Copynumber: 8.3 Consensus size: 7
7444477 TGTTTTAGGC
7444487 TTTTGTT
1 TTTTGTT
7444494 TTTTGTT
1 TTTTGTT
7444501 TTTTGCTTCT
1 TTTTG--T-T
7444511 ATTTTGTT
1 -TTTTGTT
*
7444519 TTTGGTT
1 TTTTGTT
*
7444526 TTTTTTT
1 TTTTGTT
7444533 GTTTTGTT
1 -TTTTGTT
*
7444541 TTTGGTT
1 TTTTGTT
7444548 TT
1 TT
7444550 GGTTTTGGTT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
7 31 0.67
8 7 0.15
9 2 0.04
10 1 0.02
11 5 0.11
ACGTcount: A:0.02, C:0.03, G:0.16, T:0.79
Consensus pattern (7 bp):
TTTTGTT
Found at i:7444683 original size:31 final size:31
Alignment explanation
Indices: 7444638--7444703 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
7444628 AAGATAAGGA
* * *
7444638 TGACCAAGATTAAACTACAGGTCAAATAAAG
1 TGACCAAGAATAAACCACAAGTCAAATAAAG
*
7444669 TGACCGAGAATAAACCACAAGTCAAATAAAG
1 TGACCAAGAATAAACCACAAGTCAAATAAAG
7444700 TGAC
1 TGAC
7444704 TACTAATCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.18, G:0.17, T:0.17
Consensus pattern (31 bp):
TGACCAAGAATAAACCACAAGTCAAATAAAG
Found at i:7444773 original size:23 final size:24
Alignment explanation
Indices: 7444722--7444775 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 24
7444712 AAGCTTGTTT
*
7444722 GCTAGCTAATTTGGGCTTTCGTGC
1 GCTAACTAATTTGGGCTTTCGTGC
7444746 -C-AACTAATTTTGGGC-TT-GTGC
1 GCTAACTAA-TTTGGGCTTTCGTGC
7444767 GCTAACTAA
1 GCTAACTAA
7444776 ACTGAGCTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 4 0.15
22 8 0.31
23 14 0.54
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.35
Consensus pattern (24 bp):
GCTAACTAATTTGGGCTTTCGTGC
Found at i:7445060 original size:32 final size:31
Alignment explanation
Indices: 7445021--7445230 Score: 163
Period size: 32 Copynumber: 6.5 Consensus size: 31
7445011 CTAAACTAAA
7445021 CTTAAATTTTCATTAGTGCTAGATAATTTGG
1 CTTAAATTTTCATTAGTGCTAGATAATTTGG
* * * * *
7445052 ACTCAAATTTTCATTGGTGCTAGCTAAACTAGG
1 -CTTAAATTTTCATTAGTGCTAGAT-AATTTGG
* *
7445085 CTTAAATTTTCATTGGGTGCTA-ACTAAATTGGG
1 CTTAAATTTTCATT-AGTGCTAGA-T-AATTTGG
*
7445118 CTTAAATTTTCATTAGTTCTAGATAATTTGGG
1 CTTAAATTTTCATTAGTGCTAGATAATTT-GG
* * * *
7445150 TTTAAA-TTTCTATGAGTGCTAGCTAAATTAGG
1 CTTAAATTTTC-ATTAGTGCTAGAT-AATTTGG
* *
7445182 CTTAAATTTTCATTAAGTGCCAGCTAATTTAGG
1 CTTAAATTTTCATT-AGTGCTAGATAATTT-GG
*
7445215 CTGAAATATTTTCATT
1 CT-TAA-ATTTTCATT
7445231 GGGTGCAAGC
Statistics
Matches: 144, Mismatches: 22, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
31 8 0.06
32 70 0.49
33 55 0.38
34 2 0.01
35 9 0.06
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (31 bp):
CTTAAATTTTCATTAGTGCTAGATAATTTGG
Found at i:7445078 original size:64 final size:65
Alignment explanation
Indices: 7445008--7445131 Score: 171
Period size: 64 Copynumber: 1.9 Consensus size: 65
7444998 ACTTGGCTGA
*
7445008 TAGCTAAACTAAACTTAAATTTTCATT-AGTGCTAGA-TAATTTGGACTCAAATTTTCATTGGTG
1 TAGCTAAACTAAACTTAAATTTTCATTGAGTGCTA-ACTAAATTGGACTCAAATTTTCATTGGTG
7445071 C
65 C
** * * *
7445072 TAGCTAAACTAGGCTTAAATTTTCATTGGGTGCTAACTAAATTGGGCTTAAATTTTCATT
1 TAGCTAAACTAAACTTAAATTTTCATTGAGTGCTAACTAAATTGGACTCAAATTTTCATT
7445132 AGTTCTAGAT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
64 26 0.50
65 26 0.50
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.40
Consensus pattern (65 bp):
TAGCTAAACTAAACTTAAATTTTCATTGAGTGCTAACTAAATTGGACTCAAATTTTCATTGGTGC
Found at i:7445516 original size:22 final size:22
Alignment explanation
Indices: 7445486--7445543 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
7445476 ACTTTTTCAA
*
7445486 CTAATCTAGGCTTACACG-CTAG
1 CTAAACTAGGCTTACACGTC-AG
* *
7445508 CTAAACTAGGCTTATATGTCAG
1 CTAAACTAGGCTTACACGTCAG
7445530 CTAAACTAGGCTTA
1 CTAAACTAGGCTTA
7445544 AAACTTAGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.29
Consensus pattern (22 bp):
CTAAACTAGGCTTACACGTCAG
Found at i:7445612 original size:32 final size:31
Alignment explanation
Indices: 7445528--7445614 Score: 92
Period size: 32 Copynumber: 2.8 Consensus size: 31
7445518 CTTATATGTC
*
7445528 AGCTAAACTAGGCTTAAAACTT-A--GATGCT
1 AGCTAAACTAGGCTT-AAACTTCATTGACGCT
*
7445557 AGCTAAACT-GGCTTAAATTTTCATTGACGCT
1 AGCTAAACTAGGCTTAAA-CTTCATTGACGCT
*
7445588 AGGTAAACTAGGCTTAAGACTTCATTG
1 AGCTAAACTAGGCTTAA-ACTTCATTG
7445615 GTGCCAAATA
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
27 3 0.06
28 7 0.15
29 10 0.21
31 13 0.27
32 14 0.29
33 1 0.02
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.31
Consensus pattern (31 bp):
AGCTAAACTAGGCTTAAACTTCATTGACGCT
Found at i:7446588 original size:24 final size:25
Alignment explanation
Indices: 7446561--7446640 Score: 74
Period size: 25 Copynumber: 3.0 Consensus size: 25
7446551 ATTTGTCTTC
7446561 TTTTC-TTTCTTCCTTTTTCTTTTTT
1 TTTTCTTTTCTTCCTTTTTC-TTTTT
7446586 TTTTCCTTTTTCTTTCACATTTTTCTTTTCT
1 TTTT-C-TTTTC-TTC-C-TTTTTCTTTT-T
*
7446617 TTTTCTTTTCAT-CTTTTTCTTTTT
1 TTTTCTTTTCTTCCTTTTTCTTTTT
7446641 CATTCTTTCA
Statistics
Matches: 47, Mismatches: 1, Indels: 15
0.75 0.02 0.24
Matches are distributed among these distances:
24 1 0.02
25 14 0.30
26 2 0.04
28 5 0.11
29 8 0.17
30 6 0.13
31 11 0.23
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (25 bp):
TTTTCTTTTCTTCCTTTTTCTTTTT
Found at i:7446595 original size:7 final size:6
Alignment explanation
Indices: 7446561--7446641 Score: 76
Period size: 6 Copynumber: 12.8 Consensus size: 6
7446551 ATTTGTCTTC
**
7446561 TTTTCT TTCTTCCT TTTTCT TTTT-T TTTTCCT TTTTCT TTCACAT TTTTC-
1 TTTTCT TT-TT-CT TTTTCT TTTTCT TTTT-CT TTTTCT TTTTC-T TTTTCT
7446611 TTTTCT TTTTCT TTTCATCT TTTTCT TTTTC
1 TTTTCT TTTTCT TTT--TCT TTTTCT TTTTC
7446642 ATTCTTTCAC
Statistics
Matches: 63, Mismatches: 4, Indels: 16
0.76 0.05 0.19
Matches are distributed among these distances:
5 10 0.16
6 30 0.48
7 13 0.21
8 10 0.16
ACGTcount: A:0.04, C:0.21, G:0.00, T:0.75
Consensus pattern (6 bp):
TTTTCT
Found at i:7446608 original size:25 final size:26
Alignment explanation
Indices: 7446578--7446641 Score: 80
Period size: 25 Copynumber: 2.5 Consensus size: 26
7446568 TCTTCCTTTT
7446578 TCTTTTTTTTTTCCTTTTTC-TTTCA
1 TCTTTTTTTTTTCCTTTTTCTTTTCA
*
7446603 -CATTTTTCTTTT-CTTTTTCTTTTCA
1 TC-TTTTTTTTTTCCTTTTTCTTTTCA
7446628 TCTTTTTCTTTTTC
1 TCTTTTT-TTTTTC
7446642 ATTCTTTCAC
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
24 8 0.25
25 19 0.59
26 5 0.16
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (26 bp):
TCTTTTTTTTTTCCTTTTTCTTTTCA
Found at i:7446640 original size:15 final size:15
Alignment explanation
Indices: 7446613--7446648 Score: 56
Period size: 14 Copynumber: 2.4 Consensus size: 15
7446603 CATTTTTCTT
7446613 TTCTTTTTCTTTTCA
1 TTCTTTTTCTTTTCA
7446628 -TCTTTTTCTTTTTCA
1 TTCTTTTTC-TTTTCA
7446643 TTCTTT
1 TTCTTT
7446649 CACTTCTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 8 0.42
15 6 0.32
16 5 0.26
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.75
Consensus pattern (15 bp):
TTCTTTTTCTTTTCA
Found at i:7446649 original size:14 final size:13
Alignment explanation
Indices: 7446573--7446649 Score: 65
Period size: 11 Copynumber: 6.1 Consensus size: 13
7446563 TTCTTTCTTC
7446573 CTTTTTC-TTTTT
1 CTTTTTCATTTTT
*
7446585 -TTTTTCCTTTTT
1 CTTTTTCATTTTT
**
7446597 CTTTCACATTTTT
1 CTTTTTCATTTTT
7446610 C-TTTTC-TTTTT
1 CTTTTTCATTTTT
7446621 C-TTTTCATCTTTTT
1 CTTTTTCA--TTTTT
7446635 CTTTTTCATTCTTT
1 CTTTTTCATT-TTT
7446649 C
1 C
7446650 ACTTCTTTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
11 17 0.32
12 8 0.15
13 12 0.23
14 10 0.19
15 6 0.11
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (13 bp):
CTTTTTCATTTTT
Found at i:7450949 original size:18 final size:17
Alignment explanation
Indices: 7450918--7450952 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7450908 ACATATCCTA
*
7450918 ATTCTTCTTTTTTTTAT
1 ATTCTTCTTCTTTTTAT
7450935 ATTCTTTCTTCTTTTTAT
1 ATTC-TTCTTCTTTTTAT
7450953 TTGGACACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.74
Consensus pattern (17 bp):
ATTCTTCTTCTTTTTAT
Found at i:7451292 original size:16 final size:17
Alignment explanation
Indices: 7451259--7451292 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7451249 AAATAAAAAG
*
7451259 AATAAATAATCCAAACA
1 AATAAATAATCAAAACA
7451276 AATAAATAA-CAAAACA
1 AATAAATAATCAAAACA
7451292 A
1 A
7451293 CCATATAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.71, C:0.15, G:0.00, T:0.15
Consensus pattern (17 bp):
AATAAATAATCAAAACA
Found at i:7452924 original size:19 final size:19
Alignment explanation
Indices: 7452889--7452925 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7452879 TTTGAATGGA
*
7452889 TTAAGATTTTGGATTTCAT
1 TTAAGATTTCGGATTTCAT
*
7452908 TTAAGATTTCGGGTTTCA
1 TTAAGATTTCGGATTTCA
7452926 CAAGGGTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.24, C:0.08, G:0.19, T:0.49
Consensus pattern (19 bp):
TTAAGATTTCGGATTTCAT
Found at i:7453023 original size:13 final size:13
Alignment explanation
Indices: 7453007--7453031 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7452997 TACATTTTAA
7453007 TTTAAGGTTTCAT
1 TTTAAGGTTTCAT
7453020 TTTAAGGTTTCA
1 TTTAAGGTTTCA
7453032 CTCTCGGTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.16, T:0.52
Consensus pattern (13 bp):
TTTAAGGTTTCAT
Found at i:7453194 original size:15 final size:14
Alignment explanation
Indices: 7453153--7453225 Score: 62
Period size: 14 Copynumber: 5.4 Consensus size: 14
7453143 TGATTTTTTA
*
7453153 TATTTT-TTATTAA
1 TATTTTATTATTAT
* *
7453166 AATTTTATTTTTA-
1 TATTTTATTATTAT
7453179 T-TTTTATTATTAT
1 TATTTTATTATTAT
* *
7453192 TATTTAATCTTTTAT
1 TATTTTAT-TATTAT
*
7453207 TATTTTATTGTTAT
1 TATTTTATTATTAT
7453221 TATTT
1 TATTT
7453226 AATATTTAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
12 10 0.21
13 6 0.12
14 20 0.42
15 12 0.25
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.71
Consensus pattern (14 bp):
TATTTTATTATTAT
Found at i:7453196 original size:21 final size:20
Alignment explanation
Indices: 7453167--7453232 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 20
7453157 TTTTATTAAA
7453167 ATTTTATTTTTATTTTTATT
1 ATTTTATTTTTATTTTTATT
*
7453187 ATTATTA-TTTAATCTTTTATT
1 ATT-TTATTTTTAT-TTTTATT
* *
7453208 ATTTTATTGTTATTATTTAAT
1 ATTTTATTTTTATT-TTTATT
7453229 ATTT
1 ATTT
7453233 AATAACAGCC
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
20 12 0.32
21 26 0.68
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.71
Consensus pattern (20 bp):
ATTTTATTTTTATTTTTATT
Found at i:7453212 original size:29 final size:27
Alignment explanation
Indices: 7453147--7453233 Score: 97
Period size: 26 Copynumber: 3.2 Consensus size: 27
7453137 AAAAAATGAT
** *
7453147 TTTTTATATTTT-TTATTAAAATTTTA
1 TTTTTATATTTTATTATTATTATTTAA
7453173 TTTTTAT-TTTTATTATTATTATTTAA
1 TTTTTATATTTTATTATTATTATTTAA
*
7453199 TCTTTTATTATTTTATTGTTATTATTTAA
1 T-TTTTA-TATTTTATTATTATTATTTAA
*
7453228 TATTTA
1 TTTTTA
7453234 ATAACAGCCC
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
25 4 0.08
26 19 0.37
27 5 0.10
28 5 0.10
29 19 0.37
ACGTcount: A:0.28, C:0.01, G:0.01, T:0.70
Consensus pattern (27 bp):
TTTTTATATTTTATTATTATTATTTAA
Found at i:7453334 original size:3 final size:3
Alignment explanation
Indices: 7453326--7453359 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
7453316 ACTTTTTCTT
7453326 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7453360 ATGAATAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7456971 original size:10 final size:11
Alignment explanation
Indices: 7456895--7456981 Score: 54
Period size: 14 Copynumber: 7.3 Consensus size: 11
7456885 AAAAATCAGT
7456895 AAAATAAAATA
1 AAAATAAAATA
*
7456906 AATAATGAAGATGA
1 AA-AAT-AAAAT-A
7456920 AATAA-AAAACTTA
1 AA-AATAAAA--TA
7456933 AAACATAAAATGA
1 AAA-ATAAAAT-A
7456946 TAAAATAAAGATA
1 -AAAATAAA-ATA
7456959 AAAAT-AAAT-
1 AAAATAAAATA
7456968 AAAATAAAATA
1 AAAATAAAATA
7456979 AAA
1 AAA
7456982 TACCTACGAT
Statistics
Matches: 62, Mismatches: 2, Indels: 24
0.70 0.02 0.27
Matches are distributed among these distances:
9 5 0.08
10 6 0.10
11 7 0.11
12 13 0.21
13 15 0.24
14 16 0.26
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.20
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:7456972 original size:5 final size:5
Alignment explanation
Indices: 7456945--7456983 Score: 53
Period size: 5 Copynumber: 7.6 Consensus size: 5
7456935 ACATAAAATG
7456945 ATAAA ATAAA GATAAA A-ATAA ATAAA ATAAA ATAAA ATA
1 ATAAA ATAAA -ATAAA ATA-AA ATAAA ATAAA ATAAA ATA
7456984 CCTACGATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
4 1 0.03
5 24 0.77
6 6 0.19
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:7457953 original size:3 final size:3
Alignment explanation
Indices: 7457947--7458030 Score: 84
Period size: 3 Copynumber: 28.7 Consensus size: 3
7457937 TATTTTTTTA
** * * *
7457947 AAT AAT AAT AAT AAT AAT AAT AAT AAT GCT AAT AA- ACT -AT GTAC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
*
7457991 AAT -AT AAT AAT TAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7458031 CAACAACGAT
Statistics
Matches: 66, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
2 4 0.06
3 61 0.92
4 1 0.02
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7458106 original size:28 final size:29
Alignment explanation
Indices: 7458057--7458112 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 29
7458047 ATTATACTAT
*
7458057 AATATATACAAAAAAAGAAAAA-AAATTA
1 AATATAAACAAAAAAAGAAAAAGAAATTA
* * *
7458085 AATATAAATAAAAAATGTAAAAGAAATT
1 AATATAAACAAAAAAAGAAAAAGAAATT
7458113 GGCCCAATCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 18 0.78
29 5 0.22
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.21
Consensus pattern (29 bp):
AATATAAACAAAAAAAGAAAAAGAAATTA
Found at i:7465451 original size:21 final size:19
Alignment explanation
Indices: 7465427--7465472 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 19
7465417 ATTTAATACA
*
7465427 ATAAATAAAATTTATAATTAT
1 ATAAATAAAA--TAGAATTAT
7465448 AT-AATAAAATAGAATTAT
1 ATAAATAAAATAGAATTAT
7465466 -TAAATAA
1 ATAAATAA
7465473 TTAAAAATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
17 1 0.04
18 13 0.57
20 7 0.30
21 2 0.09
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (19 bp):
ATAAATAAAATAGAATTAT
Found at i:7465502 original size:16 final size:17
Alignment explanation
Indices: 7465475--7465506 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7465465 TTAAATAATT
7465475 AAAAATAGAATAAATAC
1 AAAAATAGAATAAATAC
7465492 AAAAATA-AATAAATA
1 AAAAATAGAATAAATA
7465507 ATTCTATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (17 bp):
AAAAATAGAATAAATAC
Found at i:7466150 original size:24 final size:24
Alignment explanation
Indices: 7466114--7466159 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
7466104 GATCTCATAG
*
7466114 TCATCGCCACCAAATATTCACCCC
1 TCATCCCCACCAAATATTCACCCC
*
7466138 TCATCCCCGCCAAATATTCACC
1 TCATCCCCACCAAATATTCACC
7466160 GCTTCGTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.28, C:0.46, G:0.04, T:0.22
Consensus pattern (24 bp):
TCATCCCCACCAAATATTCACCCC
Found at i:7469582 original size:22 final size:22
Alignment explanation
Indices: 7469540--7469583 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
7469530 AATTATATTT
*
7469540 TTTTAATTAATTTTTATATAAA
1 TTTTAATTAATTTTTAAATAAA
*
7469562 TTTTAATT-TTTTATTAAATAAA
1 TTTTAATTAATTT-TTAAATAAA
7469584 AATAATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTTAATTAATTTTTAAATAAA
Found at i:7469604 original size:20 final size:20
Alignment explanation
Indices: 7469581--7469634 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
7469571 TTTATTAAAT
*
7469581 AAAAATAATTAT-TATATATA
1 AAAAATAATT-TGAATATATA
* *
7469601 AAAATTTATTTGAATATATA
1 AAAAATAATTTGAATATATA
*
7469621 AAAAATAATGTGAA
1 AAAAATAATTTGAA
7469635 AATAATAGAA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
19 1 0.04
20 26 0.96
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (20 bp):
AAAAATAATTTGAATATATA
Found at i:7470265 original size:10 final size:10
Alignment explanation
Indices: 7470247--7470281 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
7470237 TGTTTTCTCA
7470247 TGTATTCTTG
1 TGTATTCTTG
7470257 TGTATTCTTG
1 TGTATTCTTG
* *
7470267 TATAATCTTG
1 TGTATTCTTG
7470277 TGTAT
1 TGTAT
7470282 CATTGTGTTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.17, C:0.09, G:0.17, T:0.57
Consensus pattern (10 bp):
TGTATTCTTG
Found at i:7477124 original size:13 final size:14
Alignment explanation
Indices: 7477101--7477130 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
7477091 TTAGAAAAAG
7477101 AAATAATAAAAATT
1 AAATAATAAAAATT
7477115 AAATAA-AAAAATT
1 AAATAATAAAAATT
7477128 AAA
1 AAA
7477131 ATGAAAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAATAATAAAAATT
Found at i:7477154 original size:10 final size:11
Alignment explanation
Indices: 7477134--7477158 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7477124 AATTAAAATG
7477134 AAAAAGAAAAA
1 AAAAAGAAAAA
7477145 AAAAAGAAAAA
1 AAAAAGAAAAA
7477156 AAA
1 AAA
7477159 CAAAGAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:7481908 original size:185 final size:183
Alignment explanation
Indices: 7481597--7481958 Score: 525
Period size: 185 Copynumber: 2.0 Consensus size: 183
7481587 AGCATTATGG
*
7481597 CACCATTCTTAGAGATTCAAAAATGACCAATTAGAGTTGTTGAGCTGGCTATGTGAAGGCTTCCT
1 CACCATTCTTAGAGATTCAAAAATGACCAATTAGAGTTGTTGAGCTAGCTATGTGAAGGCTTCCT
* * *
7481662 TAGTTATAATGTTAACTTCTTGGAGGTTAATAGCTTATGAGAAGAAGGCTTGAAAGAAAGTGGAG
66 TAGCTATAATGTTAACTTCTTGGAGGTTAATAGCTCATGAGAAAAAGGCTTGAAAGAAAGTGGAG
* *
7481727 TTAAA-AAAGCCTAACAAGCAAGCTAAAGATTCAAGGAATA-GAGAAAGAAGGAT
131 TCAAAGAAA--CAAACAAGCAAGCTAAAGATTCAAGGAATAGGAGAAAGAAGGAT
* * *
7481780 CACCATTCTTGGAGA-TCTATAAA-GAACCAATTGGAGTTGTTGAGCTAGCTATGTGAAGGCTTC
1 CACCATTCTTAGAGATTC-AAAAATG-ACCAATTAGAGTTGTTGAGCTAGCTATGTGAAGGCTTC
* * *
7481843 CTATTGGCTATAATGTTGACTTCTTGGAGGTTAATAGCTCATGAGAAAAAGGCTTGAAGGAAAGT
64 C--TTAGCTATAATGTTAACTTCTTGGAGGTTAATAGCTCATGAGAAAAAGGCTTGAAAGAAAGT
7481908 GGAGTCAAAGGAAACAAACAAGCAAGCTAAAGATTCAAGGAATAGGAGAAA
127 GGAGTCAAA-GAAACAAACAAGCAAGCTAAAGATTCAAGGAATAGGAGAAA
7481959 TATCTAAAAG
Statistics
Matches: 160, Mismatches: 12, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
182 3 0.02
183 55 0.34
185 93 0.58
186 6 0.04
187 3 0.02
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (183 bp):
CACCATTCTTAGAGATTCAAAAATGACCAATTAGAGTTGTTGAGCTAGCTATGTGAAGGCTTCCT
TAGCTATAATGTTAACTTCTTGGAGGTTAATAGCTCATGAGAAAAAGGCTTGAAAGAAAGTGGAG
TCAAAGAAACAAACAAGCAAGCTAAAGATTCAAGGAATAGGAGAAAGAAGGAT
Found at i:7484037 original size:107 final size:107
Alignment explanation
Indices: 7483851--7484064 Score: 428
Period size: 107 Copynumber: 2.0 Consensus size: 107
7483841 GTGAGGACTT
7483851 TTAGTATACACTGTTAAATGTTTGTTGAACTAAAAATATTCAAAAGAATTTTATAAAGTATTTTA
1 TTAGTATACACTGTTAAATGTTTGTTGAACTAAAAATATTCAAAAGAATTTTATAAAGTATTTTA
7483916 AAATATTCAACTGTGAATTTATAGTGCTTAAATAAAAATCAA
66 AAATATTCAACTGTGAATTTATAGTGCTTAAATAAAAATCAA
7483958 TTAGTATACACTGTTAAATGTTTGTTGAACTAAAAATATTCAAAAGAATTTTATAAAGTATTTTA
1 TTAGTATACACTGTTAAATGTTTGTTGAACTAAAAATATTCAAAAGAATTTTATAAAGTATTTTA
7484023 AAATATTCAACTGTGAATTTATAGTGCTTAAATAAAAATCAA
66 AAATATTCAACTGTGAATTTATAGTGCTTAAATAAAAATCAA
7484065 ACTAACCCTA
Statistics
Matches: 107, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
107 107 1.00
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.38
Consensus pattern (107 bp):
TTAGTATACACTGTTAAATGTTTGTTGAACTAAAAATATTCAAAAGAATTTTATAAAGTATTTTA
AAATATTCAACTGTGAATTTATAGTGCTTAAATAAAAATCAA
Found at i:7485282 original size:15 final size:15
Alignment explanation
Indices: 7485262--7485292 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7485252 TAAGTATAAA
*
7485262 AATGATTCATACACT
1 AATGATTCATAAACT
7485277 AATGATTCATAAACT
1 AATGATTCATAAACT
7485292 A
1 A
7485293 TACACTTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.16, G:0.06, T:0.32
Consensus pattern (15 bp):
AATGATTCATAAACT
Found at i:7485508 original size:20 final size:20
Alignment explanation
Indices: 7485483--7485540 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
7485473 AAAATTCTCC
7485483 TAAAATTTTTTTAAAAAATT-
1 TAAAA-TTTTTTAAAAAATTA
*
7485503 TAAAATATTTTAAAAAATTA
1 TAAAATTTTTTAAAAAATTA
*
7485523 TGAAAAGATTTTTAAAAA
1 T-AAAA-TTTTTTAAAAA
7485541 TGAGAAATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 13 0.41
20 6 0.19
21 4 0.12
22 9 0.28
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.41
Consensus pattern (20 bp):
TAAAATTTTTTAAAAAATTA
Found at i:7485515 original size:19 final size:19
Alignment explanation
Indices: 7485491--7485566 Score: 73
Period size: 19 Copynumber: 3.9 Consensus size: 19
7485481 CCTAAAATTT
7485491 TTTTAAAAAATTTAAAATA
1 TTTTAAAAAATTTAAAATA
*
7485510 TTTTAAAAAATTATGAAAAGA
1 TTTTAAAAAATT-T-AAAATA
* *
7485531 TTTTTAAAAA-TGAGAAATA
1 TTTTAAAAAATTTA-AAATA
* *
7485550 TTTTTAAAAATATAAAA
1 TTTTAAAAAATTTAAAA
7485567 ACAAACAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
18 1 0.02
19 29 0.62
20 3 0.06
21 14 0.30
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (19 bp):
TTTTAAAAAATTTAAAATA
Found at i:7485593 original size:17 final size:16
Alignment explanation
Indices: 7485555--7485600 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
7485545 AAATATTTTT
7485555 AAAAATATAAAAACAA
1 AAAAATATAAAAACAA
*
7485571 ACAAAATATAAAAACTTA
1 A-AAAATATAAAAAC-AA
7485589 AAAAAT-TAAAAA
1 AAAAATATAAAAA
7485601 ATTCTCAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 7 0.26
17 18 0.67
18 2 0.07
ACGTcount: A:0.76, C:0.07, G:0.00, T:0.17
Consensus pattern (16 bp):
AAAAATATAAAAACAA
Found at i:7485847 original size:8 final size:8
Alignment explanation
Indices: 7485747--7485876 Score: 54
Period size: 9 Copynumber: 15.5 Consensus size: 8
7485737 TTTTTTTTTT
*
7485747 AATTTTAA
1 AATTTAAA
7485755 AATTTATAA
1 AATTTA-AA
*
7485764 AAATTAAA
1 AATTTAAA
*
7485772 AATTTTCAA
1 AA-TTTAAA
7485781 AA---AAA
1 AATTTAAA
*
7485786 AA-TTCAA
1 AATTTAAA
7485793 AATTTAAA
1 AATTTAAA
7485801 ATATTTCAAA
1 A-ATTT-AAA
*
7485811 ATTTTGAAA
1 AATTT-AAA
* *
7485820 TATTAAAA
1 AATTTAAA
7485828 AATTTATTAAA
1 AA--T-TTAAA
7485839 AATTTAAAA
1 AATTT-AAA
7485848 AATATTGAAA
1 AAT-TT-AAA
7485858 AA-TTAAA
1 AATTTAAA
*
7485865 AATTAAAA
1 AATTTAAA
7485873 AATT
1 AATT
7485877 ACAATTTTAA
Statistics
Matches: 93, Mismatches: 16, Indels: 26
0.69 0.12 0.19
Matches are distributed among these distances:
5 4 0.04
7 9 0.10
8 30 0.32
9 32 0.34
10 12 0.13
11 6 0.06
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (8 bp):
AATTTAAA
Found at i:7485847 original size:18 final size:18
Alignment explanation
Indices: 7485753--7485868 Score: 62
Period size: 18 Copynumber: 6.3 Consensus size: 18
7485743 TTTTAATTTT
7485753 AAAATTTA-TAAAAATTA
1 AAAATTTATTAAAAATTA
** *
7485770 AAAATTTTCAAAAAAAAATTC
1 AAAA-TTT--ATTAAAAATTA
* *
7485791 AAAATTTA--AAATATTTC
1 AAAATTTATTAAA-AATTA
* *
7485808 AAAATTT-TGAAATATTAA
1 AAAATTTATTAAAAATT-A
7485826 AAAATTTATTAAAAATTTA
1 AAAATTTATTAAAAA-TTA
*
7485845 AAAA-ATATTGAAAAATTA
1 AAAATTTATT-AAAAATTA
7485863 AAAATT
1 AAAATT
7485869 AAAAAATTAC
Statistics
Matches: 77, Mismatches: 10, Indels: 22
0.71 0.09 0.20
Matches are distributed among these distances:
16 3 0.04
17 17 0.22
18 25 0.32
19 15 0.19
20 6 0.08
21 11 0.14
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (18 bp):
AAAATTTATTAAAAATTA
Found at i:7485858 original size:11 final size:9
Alignment explanation
Indices: 7485791--7485876 Score: 63
Period size: 9 Copynumber: 9.7 Consensus size: 9
7485781 AAAAAAATTC
7485791 AAAATTTAA
1 AAAATTTAA
* *
7485800 AATATTTCA
1 AAAATTTAA
* *
7485809 AAATTTTGA
1 AAAATTTAA
*
7485818 AATA-TTAA
1 AAAATTTAA
7485826 AAAATTTATTA
1 AAAATTTA--A
7485837 AAAATTTAA
1 AAAATTTAA
*
7485846 AAAATATTGA
1 AAAAT-TTAA
7485856 AAAA-TT-A
1 AAAATTTAA
7485863 AAAA-TTAA
1 AAAATTTAA
7485871 AAAATT
1 AAAATT
7485877 ACAATTTTAA
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
7 7 0.11
8 13 0.21
9 25 0.41
10 7 0.11
11 9 0.15
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.36
Consensus pattern (9 bp):
AAAATTTAA
Found at i:7486053 original size:19 final size:21
Alignment explanation
Indices: 7486024--7486063 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
7486014 TACTTTTTCA
*
7486024 AAAAGATTTTT-TTATTTTTT
1 AAAAGATTTTTGTGATTTTTT
7486044 AAAA-ATTTTTGTGATTTTTT
1 AAAAGATTTTTGTGATTTTTT
7486064 TGAATTTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.62
Consensus pattern (21 bp):
AAAAGATTTTTGTGATTTTTT
Found at i:7486108 original size:46 final size:45
Alignment explanation
Indices: 7486033--7486156 Score: 114
Period size: 46 Copynumber: 2.8 Consensus size: 45
7486023 AAAAAGATTT
* *
7486033 TTTTATTTT-TTAAAAATTTTT-GTGATTTTTTTGAATTTGAATAATA
1 TTTTATTTTATT-AAAATTTTTAGT-TTTTTTTTGAATTTCAA-AATA
* * *
7486079 TTTTATTTTATTTAAATTTTTAGTTTTTTTTTTATTTTTCAAAATA
1 TTTTATTTTATTAAAATTTTTAGTTTTTTTTTGA-ATTTCAAAATA
* *
7486125 --TT-TTTTATTAAAATTTTGAGATTTTTTTTGAA
1 TTTTATTTTATTAAAATTTTTAGTTTTTTTTTGAA
7486157 ATTTTCATAT
Statistics
Matches: 65, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
43 25 0.38
44 2 0.03
46 29 0.45
47 9 0.14
ACGTcount: A:0.28, C:0.01, G:0.06, T:0.65
Consensus pattern (45 bp):
TTTTATTTTATTAAAATTTTTAGTTTTTTTTTGAATTTCAAAATA
Found at i:7486224 original size:20 final size:20
Alignment explanation
Indices: 7486199--7486268 Score: 58
Period size: 20 Copynumber: 3.6 Consensus size: 20
7486189 AATATTTTAG
7486199 TTTTAAATTTTTTAATAATT
1 TTTTAAATTTTTTAATAATT
* *
7486219 TTTTAAAATATTTAAT--TT
1 TTTTAAATTTTTTAATAATT
* *
7486237 TTTTGAATTTCTTTGA-AA-T
1 TTTTAAATTT-TTTAATAATT
7486256 TTTTAGAATTTTT
1 TTTTA-AATTTTT
7486269 AAGAAATTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 9
0.71 0.13 0.16
Matches are distributed among these distances:
18 9 0.23
19 11 0.28
20 19 0.49
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.63
Consensus pattern (20 bp):
TTTTAAATTTTTTAATAATT
Found at i:7486931 original size:2 final size:2
Alignment explanation
Indices: 7486926--7486964 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
7486916 ATATATATAT
* * *
7486926 AG AG AG AG AG AG AG AG AG AG GG AG AG AG AT AA AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
7486965 AAAATCCATT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.51, C:0.00, G:0.46, T:0.03
Consensus pattern (2 bp):
AG
Found at i:7488050 original size:6 final size:6
Alignment explanation
Indices: 7488031--7488079 Score: 89
Period size: 6 Copynumber: 8.2 Consensus size: 6
7488021 TTATACATTC
*
7488031 ATACAT ATATAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
7488079 A
1 A
7488080 CTAGCTTGTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (6 bp):
ATACAT
Found at i:7488495 original size:2 final size:2
Alignment explanation
Indices: 7488488--7488556 Score: 97
Period size: 2 Copynumber: 35.0 Consensus size: 2
7488478 TTGCTTTTGA
*
7488488 AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT -T GA- AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT
*
7488529 AT AC AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7488557 TGAAGTATAA
Statistics
Matches: 60, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
1 2 0.03
2 58 0.97
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.46
Consensus pattern (2 bp):
AT
Found at i:7489788 original size:14 final size:14
Alignment explanation
Indices: 7489766--7489804 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
7489756 ATATTAAAGA
* *
7489766 TTAAGTTTGTAATT
1 TTAATTTTGAAATT
7489780 TTAATTTTGAAATT
1 TTAATTTTGAAATT
7489794 TTAATTGTTGA
1 TTAATT-TTGA
7489805 TTATGATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 18 0.82
15 4 0.18
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56
Consensus pattern (14 bp):
TTAATTTTGAAATT
Done.