Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 55 of 129
Found at i:7905724 original size:16 final size:15
Alignment explanation
Indices: 7905695--7905724 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7905685 GTTTTTGGGA
7905695 AAAACATGAATTTTT
1 AAAACATGAATTTTT
7905710 AAAACATGAATTTTT
1 AAAACATGAATTTTT
7905725 CGATGATGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40
Consensus pattern (15 bp):
AAAACATGAATTTTT
Found at i:7906112 original size:17 final size:15
Alignment explanation
Indices: 7906062--7906156 Score: 52
Period size: 17 Copynumber: 5.9 Consensus size: 15
7906052 AATTGTAGGT
*
7906062 TTTTTTTTTATTTTA
1 TTTTTATTTATTTTA
7906077 TTTTTCAATTTCA--TT-
1 TTTTT--ATTT-ATTTTA
7906092 TTTTTATTTATTTTGA
1 TTTTTATTTATTTT-A
*
7906108 GTTTTTATTTTATTGTCA
1 -TTTTTA-TTTATT-TTA
*
7906126 ATTTTATTTAATTTTA
1 TTTTTATTT-ATTTTA
7906142 CTGTTTTATTTATTT
1 -T-TTTTATTTATTT
7906157 AATTATATTT
Statistics
Matches: 62, Mismatches: 5, Indels: 24
0.68 0.05 0.26
Matches are distributed among these distances:
12 1 0.02
13 4 0.06
14 2 0.03
15 10 0.16
16 7 0.11
17 21 0.34
18 16 0.26
19 1 0.02
ACGTcount: A:0.19, C:0.04, G:0.04, T:0.73
Consensus pattern (15 bp):
TTTTTATTTATTTTA
Found at i:7910706 original size:19 final size:20
Alignment explanation
Indices: 7910682--7910720 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
7910672 TTTTGTGCTC
7910682 AAATGAAAAAGAAAA-GAAA
1 AAATGAAAAAGAAAATGAAA
*
7910701 AAATGAAAATGAAAATGAAA
1 AAATGAAAAAGAAAATGAAA
7910721 GAAAATTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.10
Consensus pattern (20 bp):
AAATGAAAAAGAAAATGAAA
Found at i:7911079 original size:9 final size:9
Alignment explanation
Indices: 7911065--7911128 Score: 69
Period size: 9 Copynumber: 7.1 Consensus size: 9
7911055 GGTGTGCACA
7911065 AAAAAAAAG
1 AAAAAAAAG
7911074 AAAAAAATAG
1 AAAAAAA-AG
*
7911084 AAAAACAA-
1 AAAAAAAAG
7911092 AAAAAAAAG
1 AAAAAAAAG
*
7911101 -AAAAAGAG
1 AAAAAAAAG
*
7911109 AAAAAAGAG
1 AAAAAAAAG
7911118 AAAAAAGAAG
1 AAAAAA-AAG
7911128 A
1 A
7911129 CTTAAACTAA
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
8 14 0.30
9 22 0.47
10 11 0.23
ACGTcount: A:0.83, C:0.02, G:0.14, T:0.02
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:7911087 original size:17 final size:17
Alignment explanation
Indices: 7911067--7911126 Score: 70
Period size: 17 Copynumber: 3.5 Consensus size: 17
7911057 TGTGCACAAA
*
7911067 AAAAAAGAAAAAAATAG
1 AAAAAAGAAAAAAAAAG
7911084 AAAAACA-AAAAAAAAAG
1 AAAAA-AGAAAAAAAAAG
*
7911101 -AAAAAGAGAAAAAAGAG
1 AAAAAAGA-AAAAAAAAG
7911118 AAAAAAGAA
1 AAAAAAGAA
7911127 GACTTAAACT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
15 1 0.03
16 5 0.14
17 23 0.62
18 8 0.22
ACGTcount: A:0.83, C:0.02, G:0.13, T:0.02
Consensus pattern (17 bp):
AAAAAAGAAAAAAAAAG
Found at i:7911114 original size:27 final size:28
Alignment explanation
Indices: 7911064--7911123 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 28
7911054 AGGTGTGCAC
* *
7911064 AAAAAAAAAGAAAAAAATAGAAAA-ACA
1 AAAAAAAAAGAAAAAAAGAAAAAAGACA
* *
7911091 AAAAAAAAAGAAAAAGAGAAAAAAGAGA
1 AAAAAAAAAGAAAAAAAGAAAAAAGACA
7911119 AAAAA
1 AAAAA
7911124 GAAGACTTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 21 0.75
28 7 0.25
ACGTcount: A:0.85, C:0.02, G:0.12, T:0.02
Consensus pattern (28 bp):
AAAAAAAAAGAAAAAAAGAAAAAAGACA
Found at i:7911128 original size:27 final size:26
Alignment explanation
Indices: 7911065--7911128 Score: 80
Period size: 25 Copynumber: 2.5 Consensus size: 26
7911055 GGTGTGCACA
*
7911065 AAAAAAAAGAA-AAAAATAGAAAAAC
1 AAAAAAAAGAAGAAAAAGAGAAAAAC
7911090 AAAAAAAA-AAGAAAAAGAGAAAAA-
1 AAAAAAAAGAAGAAAAAGAGAAAAAC
7911114 AGAGAAAAAAGAAGA
1 A-A-AAAAAAGAAGA
7911129 CTTAAACTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
24 3 0.09
25 21 0.62
26 6 0.18
27 4 0.12
ACGTcount: A:0.83, C:0.02, G:0.14, T:0.02
Consensus pattern (26 bp):
AAAAAAAAGAAGAAAAAGAGAAAAAC
Found at i:7911922 original size:6 final size:6
Alignment explanation
Indices: 7911905--7911943 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
7911895 GATTATTCAT
*
7911905 ACTCGA ATTCGA ACTCGA ACTCGA ACTCGA ACTCGA ACT
1 ACTCGA ACTCGA ACTCGA ACTCGA ACTCGA ACTCGA ACT
7911944 TAGACTCGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.33, C:0.31, G:0.15, T:0.21
Consensus pattern (6 bp):
ACTCGA
Found at i:7911950 original size:18 final size:18
Alignment explanation
Indices: 7911913--7911953 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7911903 ATACTCGAAT
*
7911913 TCGAACTCGAACTCGAAC
1 TCGAACTCGAACTAGAAC
7911931 TCGAACTCGAACTTAG-AC
1 TCGAACTCGAAC-TAGAAC
7911949 TCGAA
1 TCGAA
7911954 ATATTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 19 0.90
19 2 0.10
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (18 bp):
TCGAACTCGAACTAGAAC
Found at i:7912087 original size:6 final size:6
Alignment explanation
Indices: 7912076--7912105 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
7912066 CGAGCTACTC
7912076 AGCTCG AGCTCG AGCTCG AGCTCG A-CTCG A
1 AGCTCG AGCTCG AGCTCG AGCTCG AGCTCG A
7912106 CAATAATCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.20, C:0.33, G:0.30, T:0.17
Consensus pattern (6 bp):
AGCTCG
Found at i:7912536 original size:60 final size:60
Alignment explanation
Indices: 7912419--7912790 Score: 258
Period size: 60 Copynumber: 6.2 Consensus size: 60
7912409 CTTGGTTTTG
** * * * * ** * * *
7912419 GTCACTTTTAGACTCGTGATATCATC-CTGATCATTCATCTATGATCTTGATTTAGTCTTG
1 GTCACTTTTAGACTCAAGACATCATCTC-GGTCATTCATCTACGACCTCAACTCAGTCTTA
*
7912479 GTCGCTTTTAGACTCAAGACATCATC-CTGGTCATTCATCTACGACCTCAACTCAGTCTTA
1 GTCACTTTTAGACTCAAGACATCATCTC-GGTCATTCATCTACGACCTCAACTCAGTCTTA
* * * * * * * * * *
7912539 ATCACTTTCAAACTCATGGCATTATCTCAGTTATTCATCTACAACCTCAACT-TGTTCTTA
1 GTCACTTTTAGACTCAAGACATCATCTCGGTCATTCATCTACGACCTCAACTCAG-TCTTA
* * * *
7912599 GTCACTTTCAGACTCACA-ACATCGTCTCGGTCATTCATCTATGACCTCAACTCAATCTTA
1 GTCACTTTTAGACTCA-AGACATCATCTCGGTCATTCATCTACGACCTCAACTCAGTCTTA
* * * * * *
7912659 GTCACTTTTAGACTCGCA-ACATCGTCTCGGTCATTTATCTATGACCTTAACTCAATCTTA
1 GTCACTTTTAGACTC-AAGACATCATCTCGGTCATTCATCTACGACCTCAACTCAGTCTTA
* * * * ** *
7912719 GTCACTTTTAGA-TCGCAG-CATCGTC-CTGATCATTCATTTACGACCAAAACTC-GATCTTG
1 GTCACTTTTAGACTC-AAGACATCATCTC-GGTCATTCATCTACGACCTCAACTCAG-TCTTA
7912778 GTCACTTTTAGAC
1 GTCACTTTTAGAC
7912791 CTGTGACATC
Statistics
Matches: 256, Mismatches: 47, Indels: 18
0.80 0.15 0.06
Matches are distributed among these distances:
58 1 0.00
59 48 0.19
60 206 0.80
61 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.36
Consensus pattern (60 bp):
GTCACTTTTAGACTCAAGACATCATCTCGGTCATTCATCTACGACCTCAACTCAGTCTTA
Found at i:7912544 original size:120 final size:120
Alignment explanation
Indices: 7912420--7912818 Score: 290
Period size: 120 Copynumber: 3.3 Consensus size: 120
7912410 TTGGTTTTGG
* * ** * ** * * *
7912420 TCACTTTTAGACTCGTGATATCATC-CTGATCATTCATCTATGATCTTGATTTAG-TCTTGGTCG
1 TCACTTTTAGACTCGTGACATCATCTCAG-TCATTCATCTACAACCTCAACTT-GTTCTTAGTCA
* *
7912483 CTTTTAGACTCA-AGACATCATC-CTGGTCATTCATCTACGACCTCAACTCAGTCTTAA
64 CTTTCAGACTCACA-ACATCATCTC-GGTCATTCATCTACGACCTCAACTCAATCTTAA
* * * * * *
7912540 TCACTTTCAAACTCATGGCATTATCTCAGTTATTCATCTACAACCTCAACTTGTTCTTAGTCACT
1 TCACTTTTAGACTCGTGACATCATCTCAGTCATTCATCTACAACCTCAACTTGTTCTTAGTCACT
* * *
7912605 TTCAGACTCACAACATCGTCTCGGTCATTCATCTATGACCTCAACTCAATCTTAG
66 TTCAGACTCACAACATCATCTCGGTCATTCATCTACGACCTCAACTCAATCTTAA
** * * * ** * ***
7912660 TCACTTTTAGACTCGCAACATCGTCTCGGTCATTTATCTATGACCTTAACTCAATCTTAGTCACT
1 TCACTTTTAGACTCGTGACATCATCTCAGTCATTCATCTACAACCTCAACTTGTTCTTAGTCACT
* * * * * * ** * **
7912725 TTTAGA-TCGCAGCATCGTC-CTGATCATTCATTTACGACCAAAACTCGATCTTGG
66 TTCAGACTCACAACATCATCTC-GGTCATTCATCTACGACCTCAACTCAATCTTAA
*
7912779 TCACTTTTAGAC-CTGTGACATCATCTCAATCATTCGATCT
1 TCACTTTTAGACTC-GTGACATCATCTCAGTCATTC-ATCT
7912819 CTACTCGATC
Statistics
Matches: 218, Mismatches: 54, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
118 2 0.01
119 65 0.30
120 147 0.67
121 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.36
Consensus pattern (120 bp):
TCACTTTTAGACTCGTGACATCATCTCAGTCATTCATCTACAACCTCAACTTGTTCTTAGTCACT
TTCAGACTCACAACATCATCTCGGTCATTCATCTACGACCTCAACTCAATCTTAA
Found at i:7912631 original size:29 final size:29
Alignment explanation
Indices: 7912599--7912691 Score: 66
Period size: 29 Copynumber: 3.1 Consensus size: 29
7912589 CTTGTTCTTA
7912599 GTCACTTTCAGACTCACAACATCGTCTCG
1 GTCACTTTCAGACTCACAACATCGTCTCG
* * **
7912628 GTCA-TTCATCTATGAC-CTCAAC-TCAATCTTA
1 GTCACTT--TC-A-GACTCACAACATC-GTCTCG
* *
7912659 GTCACTTTTAGACTCGCAACATCGTCTCG
1 GTCACTTTCAGACTCACAACATCGTCTCG
7912688 GTCA
1 GTCA
7912692 TTTATCTATG
Statistics
Matches: 47, Mismatches: 9, Indels: 16
0.65 0.12 0.22
Matches are distributed among these distances:
28 5 0.11
29 17 0.36
30 7 0.15
31 13 0.28
32 5 0.11
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (29 bp):
GTCACTTTCAGACTCACAACATCGTCTCG
Found at i:7912770 original size:59 final size:60
Alignment explanation
Indices: 7912594--7912790 Score: 263
Period size: 60 Copynumber: 3.3 Consensus size: 60
7912584 CTCAACTTGT
* * *
7912594 TCTTAGTCACTTTCAGACTCACAACATCGTCTCGGTCATTCATCTATGACCTCAACTCAA
1 TCTTAGTCACTTTTAGACTCGCAACATCGTCTCGGTCATTCATCTATGACCTAAACTCAA
* *
7912654 TCTTAGTCACTTTTAGACTCGCAACATCGTCTCGGTCATTTATCTATGACCTTAACTCAA
1 TCTTAGTCACTTTTAGACTCGCAACATCGTCTCGGTCATTCATCTATGACCTAAACTCAA
* * * * * *
7912714 TCTTAGTCACTTTTAGA-TCGCAGCATCGTC-CTGATCATTCATTTACGACCAAAACTCGA
1 TCTTAGTCACTTTTAGACTCGCAACATCGTCTC-GGTCATTCATCTATGACCTAAACTCAA
*
7912773 TCTTGGTCACTTTTAGAC
1 TCTTAGTCACTTTTAGAC
7912791 CTGTGACATC
Statistics
Matches: 122, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
58 1 0.01
59 48 0.39
60 73 0.60
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35
Consensus pattern (60 bp):
TCTTAGTCACTTTTAGACTCGCAACATCGTCTCGGTCATTCATCTATGACCTAAACTCAA
Found at i:7912812 original size:119 final size:120
Alignment explanation
Indices: 7912594--7912812 Score: 264
Period size: 119 Copynumber: 1.8 Consensus size: 120
7912584 CTCAACTTGT
* * **
7912594 TCTTAGTCACTTTCAGACTCACAACATCGTCTCGGTCATTCATCTATGACCTCAACTCAATCTTA
1 TCTTAGTCACTTTCAGACTCACAACATCGTCTCGATCATTCATCTACGACCAAAACTCAATCTTA
* **
7912659 GTCACTTTTAGACTCGCAACATCGTCTCGGTCATTTATCTATGACCTTAACTCAA
66 GTCACTTTTAGACTCGCAACATCATCTCAATCATTTATCTATGACCTTAACTCAA
* * * * *
7912714 TCTTAGTCACTTTTAGA-TCGCAGCATCGTC-CTGATCATTCATTTACGACCAAAACTCGATCTT
1 TCTTAGTCACTTTCAGACTCACAACATCGTCTC-GATCATTCATCTACGACCAAAACTCAATCTT
* **
7912777 GGTCACTTTTAGAC-CTGTGACATCATCTCAATCATT
65 AGTCACTTTTAGACTC-GCAACATCATCTCAATCATT
7912813 CGATCTCTAC
Statistics
Matches: 82, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
118 2 0.02
119 64 0.78
120 16 0.20
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.35
Consensus pattern (120 bp):
TCTTAGTCACTTTCAGACTCACAACATCGTCTCGATCATTCATCTACGACCAAAACTCAATCTTA
GTCACTTTTAGACTCGCAACATCATCTCAATCATTTATCTATGACCTTAACTCAA
Found at i:7913247 original size:3 final size:3
Alignment explanation
Indices: 7913239--7913275 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
7913229 GTCAATTTTC
*
7913239 ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
7913276 CTACTACTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:7913280 original size:3 final size:3
Alignment explanation
Indices: 7913274--7913380 Score: 178
Period size: 3 Copynumber: 35.7 Consensus size: 3
7913264 TTATTATTAT
7913274 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
* * * *
7913322 TAC TAC TAA TAC TAC TAC TAT TAC TAC TAC TAC TAC TAC AAC AAC TAC
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
7913370 TAC TAC TAC TA
1 TAC TAC TAC TA
7913381 TTATAGTATA
Statistics
Matches: 98, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 98 1.00
ACGTcount: A:0.36, C:0.31, G:0.00, T:0.33
Consensus pattern (3 bp):
TAC
Found at i:7913925 original size:20 final size:19
Alignment explanation
Indices: 7913901--7913944 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
7913891 AAAACCTAAG
*
7913901 ATTTTTCTGAAAAATC-TGA
1 ATTTTTCGGAAAAA-CATGA
*
7913920 ATTTTTGGGAAAAACATGA
1 ATTTTTCGGAAAAACATGA
7913939 ATTTTT
1 ATTTTT
7913945 TCAATGAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 1 0.05
19 21 0.95
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (19 bp):
ATTTTTCGGAAAAACATGA
Found at i:7914194 original size:18 final size:16
Alignment explanation
Indices: 7914173--7914264 Score: 76
Period size: 18 Copynumber: 5.2 Consensus size: 16
7914163 TTTCATTTTC
7914173 ATTTTATTTTTTGATTT
1 ATTTTATTTTTT-ATTT
*
7914190 GATTTGATTTTTTATTT
1 -ATTTTATTTTTTATTT
*
7914207 ATTTTGAGTTTTTATTTT
1 ATTTT-ATTTTTTA-TTT
*
7914225 ATTTTTAATTTTTATTT
1 A-TTTTATTTTTTATTT
*
7914242 AATTTTACTGGTTTTATTT
1 -ATTTTA-T-TTTTTATTT
7914261 ATTT
1 ATTT
7914265 AATTGTATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
16 4 0.06
17 19 0.31
18 27 0.44
19 12 0.19
ACGTcount: A:0.20, C:0.01, G:0.08, T:0.72
Consensus pattern (16 bp):
ATTTTATTTTTTATTT
Found at i:7924666 original size:3 final size:3
Alignment explanation
Indices: 7924658--7924695 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
7924648 ATATATCATT
*
7924658 ATA ATA ATA CTA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
7924696 TAATTAACAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7927335 original size:3 final size:3
Alignment explanation
Indices: 7927329--7927371 Score: 77
Period size: 3 Copynumber: 14.3 Consensus size: 3
7927319 GTCATCATGC
*
7927329 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT AAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
7927372 CAATATTGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.35, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:7927734 original size:11 final size:12
Alignment explanation
Indices: 7927718--7927746 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7927708 TTTTTAAATG
7927718 ATTTAAT-AAAA
1 ATTTAATAAAAA
7927729 ATTTAATAAAAA
1 ATTTAATAAAAA
7927741 ATTTAA
1 ATTTAA
7927747 ATTGATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
ATTTAATAAAAA
Found at i:7930838 original size:87 final size:87
Alignment explanation
Indices: 7930692--7930862 Score: 270
Period size: 87 Copynumber: 2.0 Consensus size: 87
7930682 CACCTAACTC
** *
7930692 AATCTCCTACATAAAAAACACCATTATTGTTAAACACATGTCAACCATAACTTATTTATGCGTAT
1 AATCTCCTACATAAAAAACACCATTATTGTTAAACACACATCAACCATAACTTATTTATGCGCAT
7930757 CAAGCATAGCAATAATGATCAA
66 CAAGCATAGCAATAATGATCAA
* * * *
7930779 AATCTCCTCCATAAAAAATACTATTATTGTTAAACACACATCAGCCATAACTTATTTATGCGCAT
1 AATCTCCTACATAAAAAACACCATTATTGTTAAACACACATCAACCATAACTTATTTATGCGCAT
*
7930844 CAAGCATGGCAATAATGAT
66 CAAGCATAGCAATAATGAT
7930863 TGGACACATG
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 76 1.00
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (87 bp):
AATCTCCTACATAAAAAACACCATTATTGTTAAACACACATCAACCATAACTTATTTATGCGCAT
CAAGCATAGCAATAATGATCAA
Found at i:7931521 original size:160 final size:161
Alignment explanation
Indices: 7930873--7932520 Score: 1057
Period size: 160 Copynumber: 10.2 Consensus size: 161
7930863 TGGACACATG
* * * * * **** *
7930873 TAATATCATGTAATAAGAGCTATATAAACTGTTAAAACATAACAATAATTGTAAATTTGTATTTT
1 TAATATCATGTATTAA-AGCTATCTAAACTGTTAAAATAGAATAATAAACACAAATTTGCATTTT
* ** * * * * * *
7930938 TGCCTTTTAAC-ATTACAAAAAATCCTAAACAGACATAAATC-TTAACTTATTCATACGTATCAA
65 GGCCTTTTAACGCGTA-AAAAAGTCCTAAAAAGACATAAA-CAATAACTTTTTCACACATATC-A
* * * * ***
7931001 ATCGTGAAAACTAAGTTTAATGATTTGGACAAGTT
127 ATCGTGGAAACCAAGTTCAATCATTCAAACAAGTT
* * * * * * *
7931036 T-ATATAATGTATTTAAGCTACCTAAACTATTAAAACATA-AAT-AT-AACTATAAAATTACAAT
1 TAATATCATGTATTAAAGCTATCTAAACTGTT-AAA-ATAGAATAATAAAC-ACAAATTTGC-AT
* * *
7931097 TTT-GCC-TTTAATG-GTATAATAAAGT-CTGAAAAAGACATAAACGATACCTTTTTCACACATA
62 TTTGGCCTTTTAACGCGTA-AA-AAAGTCCT-AAAAAGACATAAACAATAACTTTTTCACACATA
* * * *
7931158 TCAATCATGGAAACTAAGTTCAATCATTTAAATAAGTT
124 TCAATCGTGGAAACCAAGTTCAATCATTCAAACAAGTT
* * * * * * * *
7931196 TAATATCATGTATTGAAGCTATCTAAATTGTAAAAACATAAAAAT-AACTACAAAATTACATTTT
1 TAATATCATGTATTAAAGCTATCTAAACTGTTAAAATAGAATAATAAAC-ACAAATTTGCA--TT
** * * * ***
7931260 TTACCCTTTTAACGGTGTAACAAAGTCCTAAAAAGATATAAATGGTAA-TATTTTCACACATAT-
63 TTGGCCTTTTAAC-GCGTAAAAAAGTCCTAAAAAGACATAAACAATAACT-TTTTCACACATATC
* * * * ***
7931323 TAGCTGTGGAAACCAAGTTCATTTATTTGGACAAGTT
126 AATC-GTGGAAACCAAGTTCAATCATTCAAACAAGTT
*
7931360 TAATATCATGTATTAAAGCTATCAAAACTGTTAAAATAGAATAATAAACACAAATTTGCATTTTG
1 TAATATCATGTATTAAAGCTATCTAAACTGTTAAAATAGAATAATAAACACAAATTTGCATTTTG
** ** ** *
7931425 GCCTTTTAACG-GTATTAAAGTGTTAAGCAGACATAAACAATAACTTTTTCACACCTATCAATCG
66 GCCTTTTAACGCGTAAAAAAGTCCTAAAAAGACATAAACAATAACTTTTTCACACATATCAATCG
* * *
7931489 TGAAAACCAAGTTCAATCGTTCAAAAAAGTT
131 TGGAAACCAAGTTCAATCATTCAAACAAGTT
* * * * * **
7931520 TAGTATGATGTATTTAAGCTATCTAAACTATTAAAACATA-AAT-AT-AACTACAAAATTATATT
1 TAATATCATGTATTAAAGCTATCTAAACTGTT-AAA-ATAGAATAATAAAC-ACAAATTTGCATT
* * * * * *
7931582 TTTGCCCTTTAACGACATAACAAAGTCCTAAAAAGACATACATGGCAAT-A--TTTTCATACATA
63 TTGGCCTTTTAACG-CGTAAAAAAGTCCTAAAAAGACATA-A--ACAATAACTTTTTCACACATA
* * *
7931644 TC-AGCTGTGGAAATCAAGTTCAATCATTCAGACAAGTT
124 TCAATC-GTGGAAACCAAGTTCAATCATTCAAACAAGTT
* * * * * *
7931682 TAATATAATATATTGAAGCTATCAAAACTATTAAAATAGAATAATAAAACAAAAATTT-CATTTT
1 TAATATCATGTATTAAAGCTATCTAAACTGTTAAAATAGAATAAT-AAACACAAATTTGCATTTT
* * * *
7931746 GGCCTTTTAACAGCATAAAAAAGTGCAAAACAAG-CATAAACGATAACGTTTTT-ACACATATCA
65 GGCCTTTTAAC-GCGTAAAAAAGTCCTAAA-AAGACATAAACAATAAC-TTTTTCACACATATCA
* * *
7931809 ATCATGTAAACCAAGGTCAATCATTCGAAA-AAGTT
127 ATCGTGGAAACCAAGTTCAATCATTC-AAACAAGTT
* * * *
7931844 TAATATCATATATTTAAGCTATCTAAACTATTAAAACATA-AAT-AT-AACTACAAA-ATGACAT
1 TAATATCATGTATTAAAGCTATCTAAACTGTT-AAA-ATAGAATAATAAAC-ACAAATTTG-CAT
** * * * * * *
7931905 TTTTACC-CTTAACAACATAACAAAGTCCTAAAAAAACATAAACAATAGCTTTTTCACACATATC
62 TTTGGCCTTTTAAC-GCGTAAAAAAGTCCTAAAAAGACATAAACAATAACTTTTTCACACATATC
* * * * * *
7931969 AATCATGGAAATCAAGTTCAATTATTCGACCAAGTA
126 AATCGTGGAAACCAAGTTCAATCATTCAAACAAGTT
* * * * **
7932005 TAATATTATGTATGAAAACTATCCAAACTGTTAAAATAGAATAATAAATGCAAATTTGC-TTTTG
1 TAATATCATGTATTAAAGCTATCTAAACTGTTAAAATAGAATAATAAACACAAATTTGCATTTTG
* * * * *
7932069 ACCTTTTAACAGCGCAAAAAA-TCCTAAATAGAC--AAACGATAACTTTTTTCACATATATCAAT
66 GCCTTTTAAC-GCGTAAAAAAGTCCTAAAAAGACATAAACAATAAC-TTTTTCACACATATCAAT
* *
7932131 CGTGCAAACTAAGTTCAATCATTCAAACAAGTT
129 CGTGGAAACCAAGTTCAATCATTCAAACAAGTT
* * * * *
7932164 TAATATCATTTATTGAAGCTATCTAAACTGTTAAAATGGAATAATAAA-AGCAATTTTGTATTTT
1 TAATATCATGTATTAAAGCTATCTAAACTGTTAAAATAGAATAATAAACA-CAAATTTGCATTTT
* * * * *
7932228 GG-CTGTTTAACG-GCACAAAAAGTGCTAAACAGACATAAACAATAACATTTTCATAC--ATCAA
65 GGCCT-TTTAACGCGTA-AAAAAGTCCTAAAAAGACATAAACAATAACTTTTTCACACATATCAA
* ***
7932289 TCGTGGAAACCAAGTTTAATCATTTGGGACAAGTT
128 TCGTGGAAACCAAGTTCAATCA-TTCAAACAAGTT
* * *
7932324 TAATATCTTGTATTTAAA-CTATCTAAATTGTTAAAACATA-AAT-AT-AACTGCAAATTAT--A
1 TAATATCATGTA-TTAAAGCTATCTAAACTGTT-AAA-ATAGAATAATAAAC-ACAAATT-TGCA
* * * * * * * * *
7932383 TTTTTGCCATTTAAAGGCGTAACAAAGTCCCAAAAAGGCATACACAGTAACATTTTCACACATAT
61 TTTTGGCC-TTTTAACGCGTAAAAAAGTCCTAAAAAGACATAAACAATAACTTTTTCACACATAT
* **
7932448 CAATCATGGAAACCAAGTTCAATCATTCAGGCAAGTT
125 CAATCGTGGAAACCAAGTTCAATCATTCAAACAAGTT
* *
7932485 TAATATAATGTATTGAAA-CTATCCAAACTGTTAAAA
1 TAATATCATGTATT-AAAGCTATCTAAACTGTTAAAA
7932521 CAAAAAAATA
Statistics
Matches: 1169, Mismatches: 238, Indels: 160
0.75 0.15 0.10
Matches are distributed among these distances:
158 11 0.01
159 142 0.12
160 300 0.26
161 283 0.24
162 269 0.23
163 33 0.03
164 117 0.10
165 11 0.01
166 3 0.00
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (161 bp):
TAATATCATGTATTAAAGCTATCTAAACTGTTAAAATAGAATAATAAACACAAATTTGCATTTTG
GCCTTTTAACGCGTAAAAAAGTCCTAAAAAGACATAAACAATAACTTTTTCACACATATCAATCG
TGGAAACCAAGTTCAATCATTCAAACAAGTT
Found at i:7931541 original size:324 final size:324
Alignment explanation
Indices: 7931129--7932536 Score: 1301
Period size: 324 Copynumber: 4.4 Consensus size: 324
7931119 AGTCTGAAAA
* * * * *
7931129 AGACATAAACGAT-ACCTTTTTCACACATATCAATCATGGAAACTAAGTTCAATCATTTAAATAA
1 AGACATAAACGATAACGTTTTTCACACATATCAATCATGAAAACCAAGTTCAATCATTCAAAAAA
* * * *
7931193 GTTTAATATCATGTATTGAAGCTATCTAAATTGTAAAAACATAAAAATAACTACAAAATTACATT
66 GTTTAATATCATGTATTGAAGCTATCTAAACTATTAAAACATAAATATAACTACAAAATTACA-T
*** *
7931258 TTTTACCCTTTTAACGGTGTAACAAAGTCCTAAAAAGATATAAATGGTAATATTTTCACACATAT
130 TTTTACCC-TTTAACGACATAACAAAGTCCTAAAAAGACATAAATGGTAATATTTTCACACATAT
* * * * *
7931323 TAGCTGTGGAAACCAAGTTCATTTATTTGGACAAGTTTAATATCATGTATTAAAGCTATCAAAAC
194 CAGCTGTGGAAATCAAGTTCAATTATTTAGACAAGTTTAATATAATGTATTAAAGCTATCAAAAC
* *
7931388 TGTTAAAATAGAATAATAAACACAAATTTGCATTTTGGCCTTTTAAC-G-GTATTAAAGTGTTAA
259 TGTTAAAATAGAATAATAAACACAAATTTGCATTTTGGCCTTTTAACAGCGTA-AAAAGTGCTAA
*
7931451 GC
323 AC
* * * *
7931453 AGACATAAACAATAAC-TTTTTCACACCTATCAATCGTGAAAACCAAGTTCAATCGTTCAAAAAA
1 AGACATAAACGATAACGTTTTTCACACATATCAATCATGAAAACCAAGTTCAATCATTCAAAAAA
* * * *
7931517 GTTTAGTATGATGTATTTAAGCTATCTAAACTATTAAAACATAAATATAACTACAAAATTATATT
66 GTTTAATATCATGTATTGAAGCTATCTAAACTATTAAAACATAAATATAACTACAAAATTACATT
* * * *
7931582 TTTGCCCTTTAACGACATAACAAAGTCCTAAAAAGACATACATGGCAATATTTTCATACATATCA
131 TTTACCCTTTAACGACATAACAAAGTCCTAAAAAGACATAAATGGTAATATTTTCACACATATCA
* * * * *
7931647 GCTGTGGAAATCAAGTTCAATCATTCAGACAAGTTTAATATAATATATTGAAGCTATCAAAACTA
196 GCTGTGGAAATCAAGTTCAATTATTTAGACAAGTTTAATATAATGTATTAAAGCTATCAAAACTG
* * *
7931712 TTAAAATAGAATAATAAAACAAAAATTT-CATTTTGGCCTTTTAACAGCATAAAAAAGTGCAAAA
261 TTAAAATAGAATAAT-AAACACAAATTTGCATTTTGGCCTTTTAACAGCGT-AAAAAGTGCTAAA
7931776 C
324 C
* * *
7931777 A-AGCATAAACGATAACGTTTTT-ACACATATCAATCATGTAAACCAAGGTCAATCATTCGAAAA
1 AGA-CATAAACGATAACGTTTTTCACACATATCAATCATGAAAACCAAGTTCAATCATTCAAAAA
* * *
7931840 AGTTTAATATCATATATTTAAGCTATCTAAACTATTAAAACATAAATATAACTACAAAATGACAT
65 AGTTTAATATCATGTATTGAAGCTATCTAAACTATTAAAACATAAATATAACTACAAAATTACAT
* * *** *
7931905 TTTTACCC-TTAACAACATAACAAAGTCCTAAAAAAACATAAACAATAGCT-TTTTCACACATAT
130 TTTTACCCTTTAACGACATAACAAAGTCCTAAAAAGACATAAATGGTA-ATATTTTCACACATAT
* * * * * * * *
7931968 CA-ATCATGGAAATCAAGTTCAATTA-TTCGACCAAGTATAATATTATGTATGAAAACTATCCAA
194 CAGCT-GTGGAAATCAAGTTCAATTATTTAGA-CAAGTTTAATATAATGTATTAAAGCTATCAAA
** * * * *
7932031 ACTGTTAAAATAGAATAATAAATGCAAATTTGC-TTTTGACCTTTTAACAGCGCAAAAAATCCTA
257 ACTGTTAAAATAGAATAATAAACACAAATTTGCATTTTGGCCTTTTAACAGCGTAAAAAGTGCTA
*
7932095 AAT
322 AAC
* * * * * *
7932098 AGAC--AAACGATAACTTTTTTCACATATATCAATCGTGCAAACTAAGTTCAATCATTCAAACAA
1 AGACATAAACGATAACGTTTTTCACACATATCAATCATGAAAACCAAGTTCAATCATTCAAAAAA
* * * * ** **
7932161 GTTTAATATCATTTATTGAAGCTATCTAAACTGTT-AAA-ATGGAATAATAA-AAGCAATTTTGT
66 GTTTAATATCATGTATTGAAGCTATCTAAACTATTAAAACAT-AAAT-ATAACTA-CAAAATTAC
** ** * * * * *** * *
7932223 ATTTTGGCTGTTTAACGGCACAA-AAAGTGCTAAACAGACATAAACAATAACATTTTCATAC--A
128 ATTTTTACCCTTTAACGACATAACAAAGTCCTAAAAAGACATAAATGGTAATATTTTCACACATA
* * * * * ** *
7932285 TCA-ATCGTGGAAACCAAGTTTAATCATTTGGGACAAGTTTAATATCTTGTATTTAAA-CTATCT
193 TCAGCT-GTGGAAATCAAGTTCAATTATTT-AGACAAGTTTAATATAATGTA-TTAAAGCTATCA
* * * *
7932348 AAATTGTTAAAACATA-AAT-AT-AACTGCAAATTAT--ATTTTTGCCATTTAA-AGGCGTAACA
255 AAACTGTT-AAA-ATAGAATAATAAAC-ACAAATT-TGCATTTTGGCCTTTTAACA-GCGTAA-A
* * *
7932407 AAGTCCCAAAA
314 AAGTGCTAAAC
* * * * ***
7932418 AGGCATACAC-AGTAAC-ATTTTCACACATATCAATCATGGAAACCAAGTTCAATCATTCAGGCA
1 AGACATAAACGA-TAACGTTTTTCACACATATCAATCATGAAAACCAAGTTCAATCATTCAAAAA
* * * * * *
7932481 AGTTTAATATAATGTATTGAAACTATCCAAACTGTTAAAACAAAAAAATAACTACA
65 AGTTTAATATCATGTATTGAAGCTATCTAAACTATTAAAACATAAATATAACTACA
7932537 TTTTTACATT
Statistics
Matches: 898, Mismatches: 152, Indels: 71
0.80 0.14 0.06
Matches are distributed among these distances:
318 28 0.03
319 76 0.08
320 137 0.15
321 103 0.11
322 182 0.20
323 130 0.14
324 234 0.26
325 8 0.01
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (324 bp):
AGACATAAACGATAACGTTTTTCACACATATCAATCATGAAAACCAAGTTCAATCATTCAAAAAA
GTTTAATATCATGTATTGAAGCTATCTAAACTATTAAAACATAAATATAACTACAAAATTACATT
TTTACCCTTTAACGACATAACAAAGTCCTAAAAAGACATAAATGGTAATATTTTCACACATATCA
GCTGTGGAAATCAAGTTCAATTATTTAGACAAGTTTAATATAATGTATTAAAGCTATCAAAACTG
TTAAAATAGAATAATAAACACAAATTTGCATTTTGGCCTTTTAACAGCGTAAAAAGTGCTAAAC
Found at i:7931683 original size:162 final size:162
Alignment explanation
Indices: 7930873--7932536 Score: 1164
Period size: 161 Copynumber: 10.3 Consensus size: 162
7930863 TGGACACATG
* * * * ** * *
7930873 TAATATCATGTAATAAGAGCTATATAAACTGTTAAAACATAACA-ATAATTGTAAATTTGTATTT
1 TAATATCATGTATTGA-AGCTATCTAAACTGTTAAAACATAA-ATATAACTACAAAATTATATTT
* *** * * * * * * *
7930937 TTGCCTTTTAACATTACAA-AAAATCCTAAACAGACATAAATC-TTAACT-TATTCATACGTATC
64 TTGCCCTTTAACGGCATAACAAAGTCCTAAAAAGACATAAA-CGATAA-TATTTTCACACATATC
* * * * **
7930999 AAATCGTGAAAACTAAGTTTAATGATTTGGACAAGTT
127 -AATCGTGGAAACCAAGTTCAATCATTCAGACAAGTT
* * * * * * *
7931036 T-ATATAATGTATTTAAGCTACCTAAACTATTAAAACATAAATATAACTATAAAATTACAATTTT
1 TAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAATATAACTACAAAATTATATTTTT
* * * *
7931100 G-CCTTTAATGGTATAATAAAGT-CTGAAAAAGACATAAACGATACCT-TTTTCACACATATCAA
66 GCCCTTTAACGGCATAACAAAGTCCT-AAAAAGACATAAACGATA-ATATTTTCACACATATCAA
* * * * *
7931162 TCATGGAAACTAAGTTCAATCATTTAAATAAGTT
129 TCGTGGAAACCAAGTTCAATCATTCAGACAAGTT
* * * *
7931196 TAATATCATGTATTGAAGCTATCTAAATTGTAAAAACATAAAAATAACTACAAAATTACATTTTT
1 TAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAATATAACTACAAAATTATA-TTTT
* ** * * * *
7931261 TACCCTTTTAACGGTGTAACAAAGTCCTAAAAAGATATAAATGGTAATATTTTCACACATAT-TA
65 TGCCC-TTTAACGGCATAACAAAGTCCTAAAAAGACATAAACGATAATATTTTCACACATATCAA
* * * **
7931325 GCTGTGGAAACCAAGTTCATTTATTTGGACAAGTT
129 TC-GTGGAAACCAAGTTCAATCATTCAGACAAGTT
* * * **
7931360 TAATATCATGTATTAAAGCTATCAAAACTGTT-AAA-ATAGAATAATAAAC-ACAAATTTGCATT
1 TAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATA-AAT-AT-AACTACAAAATTATATT
* * ** ** ** * *
7931422 TTGGCCTTTTAACGG--TATTAAAGTGTTAAGCAGACATAAACAATAACT-TTTTCACACCTATC
63 TTTGCCCTTTAACGGCATAACAAAGTCCTAAAAAGACATAAACGATAA-TATTTTCACACATATC
* * * *
7931484 AATCGTGAAAACCAAGTTCAATCGTTCAAAAAAGTT
127 AATCGTGGAAACCAAGTTCAATCATTCAGACAAGTT
* * * *
7931520 TAGTATGATGTATTTAAGCTATCTAAACTATTAAAACATAAATATAACTACAAAATTATATTTTT
1 TAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAATATAACTACAAAATTATATTTTT
* * * ** * *
7931585 GCCCTTTAACGACATAACAAAGTCCTAAAAAGACATACATGGCAATATTTTCATACATATC-AGC
66 GCCCTTTAACGGCATAACAAAGTCCTAAAAAGACATAAACGATAATATTTTCACACATATCAATC
*
7931649 TGTGGAAATCAAGTTCAATCATTCAGACAAGTT
131 -GTGGAAACCAAGTTCAATCATTCAGACAAGTT
* * * * *
7931682 TAATATAATATATTGAAGCTATCAAAACTATT-AAA-ATAGAATAATAA-AACAAAAATT-TCAT
1 TAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATA-AAT-ATAACTAC-AAAATTAT-AT
* * * * * * ** *
7931743 TTTGGCCTTTTAACAGCATAAAAAAGTGCAAAACAAG-CATAAACGATAACGTTTTTACACATAT
62 TTTTGCCCTTTAACGGCATAACAAAGTCCTAAA-AAGACATAAACGATAATATTTTCACACATAT
* * * *
7931807 CAATCATGTAAACCAAGGTCAATCATTC-GAAAAAGTT
126 CAATCGTGGAAACCAAGTTCAATCATTCAG-ACAAGTT
* * * * *
7931844 TAATATCATATATTTAAGCTATCTAAACTATTAAAACATAAATATAACTACAAAATGACATTTTT
1 TAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAATATAACTACAAAATTATATTTTT
* ** * * *
7931909 ACCC-TTAACAACATAACAAAGTCCTAAAAAAACATAAACAATAGCT-TTTTCACACATATCAAT
66 GCCCTTTAACGGCATAACAAAGTCCTAAAAAGACATAAACGATA-ATATTTTCACACATATCAAT
* * * *
7931972 CATGGAAATCAAGTTCAATTATTC-GACCAAGTA
130 CGTGGAAACCAAGTTCAATCATTCAGA-CAAGTT
* * * * * **
7932005 TAATATTATGTA-TGAAAACTATCCAAACTGTT-AAA-ATAGAATAATAAATGC-AAATT-TGCT
1 TAATATCATGTATTG-AAGCTATCTAAACTGTTAAAACATA-AAT-ATAACTACAAAATTATATT
* * * *
7932065 TTTGACCTTTTAACAGCGCA-AA-AAA-TCCTAAATAGAC--AAACGATAACTTTTTTCACATAT
63 TTTG-CCCTTTAAC-G-GCATAACAAAGTCCTAAAAAGACATAAACGATAA-TATTTTCACACAT
* * *
7932125 ATCAATCGTGCAAACTAAGTTCAATCATTCAAACAAGTT
124 ATCAATCGTGGAAACCAAGTTCAATCATTCAGACAAGTT
* * * ** *
7932164 TAATATCATTTATTGAAGCTATCTAAACTGTT-AAA-ATGGAATAATAA-AAGCAATTTTGTATT
1 TAATATCATGTATTGAAGCTATCTAAACTGTTAAAACAT-AAAT-ATAACTA-CAAAATTATATT
* ** * * * * * *
7932226 TTGGCTGTTTAACGGCACAA-AAAGTGCTAAACAGACATAAACAATAACATTTTCATAC--ATCA
63 TTTGCCCTTTAACGGCATAACAAAGTCCTAAAAAGACATAAACGATAATATTTTCACACATATCA
* **
7932288 ATCGTGGAAACCAAGTTTAATCATTTGGGACAAGTT
128 ATCGTGGAAACCAAGTTCAATCA-TTCAGACAAGTT
* * * * *
7932324 TAATATCTTGTATTTAAACTATCTAAATTGTTAAAACATAAATATAACTGC-AAATTATATTTTT
1 TAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAATATAACTACAAAATTATATTTTT
* * * * * * *
7932388 GCCATTTAAAGGCGTAACAAAGTCCCAAAAAGGCATACAC-AGTAACATTTTCACACATATCAAT
66 GCCCTTTAACGGCATAACAAAGTCCTAAAAAGACATAAACGA-TAATATTTTCACACATATCAAT
* *
7932452 CATGGAAACCAAGTTCAATCATTCAGGCAAGTT
130 CGTGGAAACCAAGTTCAATCATTCAGACAAGTT
* * * * *
7932485 TAATATAATGTATTGAAACTATCCAAACTGTTAAAACAAAAAAATAACTACA
1 TAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAATATAACTACA
7932537 TTTTTACATT
Statistics
Matches: 1175, Mismatches: 260, Indels: 133
0.75 0.17 0.08
Matches are distributed among these distances:
158 11 0.01
159 141 0.12
160 275 0.23
161 320 0.27
162 280 0.24
163 32 0.03
164 111 0.09
165 5 0.00
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (162 bp):
TAATATCATGTATTGAAGCTATCTAAACTGTTAAAACATAAATATAACTACAAAATTATATTTTT
GCCCTTTAACGGCATAACAAAGTCCTAAAAAGACATAAACGATAATATTTTCACACATATCAATC
GTGGAAACCAAGTTCAATCATTCAGACAAGTT
Found at i:7937725 original size:36 final size:36
Alignment explanation
Indices: 7937678--7937748 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
7937668 TACTCTTAAC
*
7937678 TTAATCTTGACTTTTGCATCCAACTTTTATCCATTT
1 TTAATCTTGACTTTTGCATCCAACTCTTATCCATTT
7937714 TTAATCTTGACTTTTGCATCCAACTCTTATCCATT
1 TTAATCTTGACTTTTGCATCCAACTCTTATCCATT
7937749 AGTACTTGCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.23, C:0.24, G:0.06, T:0.48
Consensus pattern (36 bp):
TTAATCTTGACTTTTGCATCCAACTCTTATCCATTT
Found at i:7943322 original size:19 final size:19
Alignment explanation
Indices: 7943298--7943334 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7943288 ATTGGTAAAA
7943298 AAAAAACAAAAAAATGGGT
1 AAAAAACAAAAAAATGGGT
* *
7943317 AAAAAAGAAAGAAATGGG
1 AAAAAACAAAAAAATGGG
7943335 ATTTTGCATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.22, T:0.08
Consensus pattern (19 bp):
AAAAAACAAAAAAATGGGT
Found at i:7943918 original size:20 final size:23
Alignment explanation
Indices: 7943871--7943926 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 23
7943861 TATTTACATG
7943871 ATTGCATGATTTATATATTATTA
1 ATTGCATGATTTATATATTATTA
* *
7943894 TTTGCATTA-TTATATA-T-TTA
1 ATTGCATGATTTATATATTATTA
7943914 ATTGCATG-TTTAT
1 ATTGCATGATTTAT
7943927 TTGCATAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
20 13 0.46
21 1 0.04
22 7 0.25
23 7 0.25
ACGTcount: A:0.30, C:0.05, G:0.09, T:0.55
Consensus pattern (23 bp):
ATTGCATGATTTATATATTATTA
Found at i:7943931 original size:55 final size:55
Alignment explanation
Indices: 7943872--7944048 Score: 201
Period size: 55 Copynumber: 3.1 Consensus size: 55
7943862 ATTTACATGA
* *
7943872 TTGCATGATTTATATATTATTATTTGCATTATTATATATTTAATTGCATGTTTAT
1 TTGCATGATTTATATATTACTATTTGCATGATTATATATTTAATTGCATGTTTAT
* * *
7943927 TTGCATAATTTATGTATTACTAGTTGCATGATTATATATTTAATTGCCTAATATGTTTAT
1 TTGCATGATTTATATATTACTATTTGCATGATTATATATTTAATTG-C----ATGTTTAT
* * * * * *
7943987 TTGCATGGTTTATATATTACTATTTGTATGATTATATAATTAAGTGTATATTTAT
1 TTGCATGATTTATATATTACTATTTGCATGATTATATATTTAATTGCATGTTTAT
*
7944042 TCGCATG
1 TTGCATG
7944049 GTTAATTGCA
Statistics
Matches: 102, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
55 54 0.53
56 1 0.01
60 47 0.46
ACGTcount: A:0.29, C:0.07, G:0.12, T:0.52
Consensus pattern (55 bp):
TTGCATGATTTATATATTACTATTTGCATGATTATATATTTAATTGCATGTTTAT
Found at i:7943954 original size:35 final size:32
Alignment explanation
Indices: 7943890--7943961 Score: 81
Period size: 35 Copynumber: 2.2 Consensus size: 32
7943880 TTTATATATT
*
7943890 ATTATTTGCATTATTATATATTTAATTGCATG
1 ATTATTTGCATAATTATATATTTAATTGCATG
* * *
7943922 TTTATTTGCATAATTTATGTATTACTAGTTGCATG
1 ATTATTTGCATAA-TTATATATT--TAATTGCATG
7943957 ATTAT
1 ATTAT
7943962 ATATTTAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
32 11 0.34
33 8 0.25
35 13 0.41
ACGTcount: A:0.29, C:0.07, G:0.11, T:0.53
Consensus pattern (32 bp):
ATTATTTGCATAATTATATATTTAATTGCATG
Found at i:7944313 original size:20 final size:20
Alignment explanation
Indices: 7944290--7944383 Score: 88
Period size: 20 Copynumber: 4.8 Consensus size: 20
7944280 GATTTCATGA
7944290 TTATATATTTGCATGATATT
1 TTATATATTTGCATGATATT
**
7944310 TTATAT-TATTGCATGGCATT
1 TTATATAT-TTGCATGATATT
* *
7944330 TTATGT-TTTGCATGATAAT
1 TTATATATTTGCATGATATT
* *
7944349 TAATATATTTGCAT-A-ATA
1 TTATATATTTGCATGATATT
*
7944367 TTATATATTTACATGAT
1 TTATATATTTGCATGAT
7944384 TGTTCTTATT
Statistics
Matches: 58, Mismatches: 12, Indels: 8
0.74 0.15 0.10
Matches are distributed among these distances:
18 13 0.22
19 16 0.28
20 29 0.50
ACGTcount: A:0.32, C:0.06, G:0.11, T:0.51
Consensus pattern (20 bp):
TTATATATTTGCATGATATT
Found at i:7944359 original size:59 final size:55
Alignment explanation
Indices: 7944292--7944419 Score: 143
Period size: 55 Copynumber: 2.3 Consensus size: 55
7944282 TTTCATGATT
* * *
7944292 ATATATTTGCATGATATTTTATATTATTGCATGGCATT-TTATGTTTTGCATG-ATAATTA
1 ATATATTTGCATGATATTATATA-T-TTACAT-G-ATTGTTAT-TATTGCA-GAATAATTA
* *
7944351 ATATATTTGCATAATATTATATATTTACATGATTGTTCTTATTGCAGAATAATTA
1 ATATATTTGCATGATATTATATATTTACATGATTGTTATTATTGCAGAATAATTA
7944406 ATATATTTGCATGA
1 ATATATTTGCATGA
7944420 CATTCTTGCA
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
54 1 0.02
55 29 0.48
56 4 0.07
57 5 0.08
58 1 0.02
59 21 0.34
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (55 bp):
ATATATTTGCATGATATTATATATTTACATGATTGTTATTATTGCAGAATAATTA
Found at i:7945518 original size:21 final size:19
Alignment explanation
Indices: 7945480--7945518 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
7945470 TGCATACTAA
*
7945480 CCTTTTATATTTTGTTATT
1 CCTTTTATATTTTATTATT
7945499 CCTTTTATATATTATATTAT
1 CCTTTTATAT-TT-TATTAT
7945519 GTTAACTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 10 0.59
20 2 0.12
21 5 0.29
ACGTcount: A:0.23, C:0.10, G:0.03, T:0.64
Consensus pattern (19 bp):
CCTTTTATATTTTATTATT
Found at i:7951787 original size:42 final size:43
Alignment explanation
Indices: 7951709--7951884 Score: 221
Period size: 42 Copynumber: 4.1 Consensus size: 43
7951699 AGAATGATGT
* * * *
7951709 CATTTTATTTTCCAAACGTTACAAAGCCTCAATTGTGGGAGAG
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGAGAG
* *
7951752 CATTTTATTTTTC-AAAGTTTCAAAGCCTTAGTTGTGGGGGAG
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGAGAG
* * * * *
7951794 CATTTTATTTTTCAAAAGTTCCAAAACCTAAGTTATGGGGGAG
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGAGAG
* *
7951837 CATTTTA-TTTTCAAAAGTTTTAAAGCCTCAGTTGTGGGAGAT
1 CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGAGAG
7951879 CATTTT
1 CATTTT
7951885 TCAAAAAAAG
Statistics
Matches: 115, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
42 71 0.62
43 44 0.38
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.38
Consensus pattern (43 bp):
CATTTTATTTTTCAAAAGTTTCAAAGCCTCAGTTGTGGGAGAG
Found at i:7951838 original size:85 final size:85
Alignment explanation
Indices: 7951709--7951884 Score: 230
Period size: 85 Copynumber: 2.1 Consensus size: 85
7951699 AGAATGATGT
* * *
7951709 CATTTTATTTTCCAAACGTTACAAAGCCTCAATTGTGGGAGAGCATTTTATTTTTC-AAAGTTTC
1 CATTTTATTTTCCAAAAGTTACAAAACCTCAATTATGGGAGAGCATTTTA-TTTTCAAAAGTTTC
* *
7951773 AAAGCCTTAGTTGTGGGGGAG
65 AAAGCCTCAGTTGTGGGAGAG
* * * *
7951794 CATTTTATTTTTCAAAAGTTCCAAAACCT-AAGTTATGGGGGAGCATTTTATTTTCAAAAGTTTT
1 CATTTTATTTTCCAAAAGTTACAAAACCTCAA-TTATGGGAGAGCATTTTATTTTCAAAAGTTTC
*
7951858 AAAGCCTCAGTTGTGGGAGAT
65 AAAGCCTCAGTTGTGGGAGAG
7951879 CATTTT
1 CATTTT
7951885 TCAAAAAAAG
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
84 7 0.09
85 72 0.91
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.38
Consensus pattern (85 bp):
CATTTTATTTTCCAAAAGTTACAAAACCTCAATTATGGGAGAGCATTTTATTTTCAAAAGTTTCA
AAGCCTCAGTTGTGGGAGAG
Found at i:7952163 original size:13 final size:13
Alignment explanation
Indices: 7952147--7952180 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
7952137 TTTTTTGTAT
7952147 TTTAATTTTTTAG
1 TTTAATTTTTTAG
*
7952160 TTTAA-TTTTTGG
1 TTTAATTTTTTAG
7952172 TTTAATTTT
1 TTTAATTTT
7952181 ATTTTTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.21, C:0.00, G:0.09, T:0.71
Consensus pattern (13 bp):
TTTAATTTTTTAG
Found at i:7952812 original size:31 final size:31
Alignment explanation
Indices: 7952766--7952829 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
7952756 ATTGTATATT
*
7952766 TTGCATGGTTCATATATTATTATTTACATGA
1 TTGCATGATTCATATATTATTATTTACATGA
* *
7952797 TTGCATGATTTATATATTATTATTTGCATGA
1 TTGCATGATTCATATATTATTATTTACATGA
7952828 TT
1 TT
7952830 ATATATTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.28, C:0.08, G:0.12, T:0.52
Consensus pattern (31 bp):
TTGCATGATTCATATATTATTATTTACATGA
Found at i:7952930 original size:60 final size:55
Alignment explanation
Indices: 7952797--7952954 Score: 226
Period size: 60 Copynumber: 2.8 Consensus size: 55
7952787 ATTTACATGA
7952797 TTGCATGATTTATATATTATTATTTGCATGATTATATATTTAATTATATGTTTAT
1 TTGCATGATTTATATATTATTATTTGCATGATTATATATTTAATTATATGTTTAT
* * *
7952852 TTGCATGATTGATGTATTATTAGTTGCATGATTATATATTTAATAGCCTAATATGTTTAT
1 TTGCATGATTTATATATTATTATTTGCATGATTATATATTTAAT----T-ATATGTTTAT
* *
7952912 TTGCATCATTTATATATTACTATTTGCATGATTATATATTTAA
1 TTGCATGATTTATATATTATTATTTGCATGATTATATATTTAA
7952955 GTGTATATTT
Statistics
Matches: 90, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
55 41 0.46
59 1 0.01
60 48 0.53
ACGTcount: A:0.31, C:0.06, G:0.11, T:0.52
Consensus pattern (55 bp):
TTGCATGATTTATATATTATTATTTGCATGATTATATATTTAATTATATGTTTAT
Found at i:7952949 original size:22 final size:23
Alignment explanation
Indices: 7952909--7952951 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
7952899 CTAATATGTT
7952909 TATTTGCATCATTTATATATTAC
1 TATTTGCATCATTTATATATTAC
*
7952932 TATTTGCATGA-TTATATATT
1 TATTTGCATCATTTATATATT
7952952 TAAGTGTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.30, C:0.09, G:0.07, T:0.53
Consensus pattern (23 bp):
TATTTGCATCATTTATATATTAC
Found at i:7953135 original size:24 final size:24
Alignment explanation
Indices: 7953102--7953163 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
7953092 TTATTATTGC
* *
7953102 ATGATTTTATATTTATTTCATGAT
1 ATGATATTATATTTATTGCATGAT
7953126 ATGATATTATATATTATTGCATGAT
1 ATGATATTATAT-TTATTGCATGAT
*
7953151 -TAATATTATATTT
1 ATGATATTATATTT
7953164 GAATGATATT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
23 2 0.06
24 21 0.62
25 11 0.32
ACGTcount: A:0.34, C:0.03, G:0.08, T:0.55
Consensus pattern (24 bp):
ATGATATTATATTTATTGCATGAT
Found at i:7953162 original size:19 final size:20
Alignment explanation
Indices: 7953090--7953159 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 20
7953080 TTTATTTATT
*
7953090 TATTATTATTGCATGATT-T
1 TATTATTATTGCATGATTAA
*
7953109 TA-TATTTATTTCATGATATGATA
1 TATTA-TTATTGCATGAT-T-A-A
7953132 TTATATATTATTGCATGATTAA
1 -TAT-TATTATTGCATGATTAA
7953154 TATTAT
1 TATTAT
7953160 ATTTGAATGA
Statistics
Matches: 40, Mismatches: 3, Indels: 15
0.69 0.05 0.26
Matches are distributed among these distances:
18 2 0.05
19 13 0.32
20 4 0.10
21 3 0.08
22 1 0.03
23 1 0.03
24 3 0.08
25 11 0.28
26 2 0.05
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54
Consensus pattern (20 bp):
TATTATTATTGCATGATTAA
Found at i:7953163 original size:44 final size:44
Alignment explanation
Indices: 7953089--7953172 Score: 118
Period size: 44 Copynumber: 1.9 Consensus size: 44
7953079 GTTTATTTAT
* *
7953089 TTATTATTATTGCATGATTTTATATTTATTT-CATGATATGATA
1 TTATTATTATTGCATGATTTAATATTTATTTGAATGATATGATA
7953132 TTATATATTATTGCATGA-TTAATATTATATTTGAATGATAT
1 TTAT-TATTATTGCATGATTTAATATT-TATTTGAATGATAT
7953173 TTAATTGCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
43 11 0.31
44 18 0.50
45 7 0.19
ACGTcount: A:0.33, C:0.04, G:0.10, T:0.54
Consensus pattern (44 bp):
TTATTATTATTGCATGATTTAATATTTATTTGAATGATATGATA
Found at i:7953287 original size:20 final size:20
Alignment explanation
Indices: 7953264--7953374 Score: 83
Period size: 20 Copynumber: 5.8 Consensus size: 20
7953254 GATTTCATGA
* *
7953264 TTATATATTTGCATGGTATT
1 TTATATATTTGCATGATAAT
7953284 TTATAT-TATTGCATGATAAT
1 TTATATAT-TTGCATGATAAT
* * *
7953304 TAATATACTTGCATAAT-A-
1 TTATATATTTGCATGATAAT
*
7953322 TTATATATTTACATGAT--T
1 TTATATATTTGCATGATAAT
7953340 GTTAT-TA-TTGCATGATAAT
1 -TTATATATTTGCATGATAAT
* *
7953359 TAATATATTTGTATGA
1 TTATATATTTGCATGA
7953375 CATTCTTGCA
Statistics
Matches: 71, Mismatches: 12, Indels: 16
0.72 0.12 0.16
Matches are distributed among these distances:
17 8 0.11
18 18 0.25
19 9 0.13
20 36 0.51
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.50
Consensus pattern (20 bp):
TTATATATTTGCATGATAAT
Found at i:7954465 original size:3 final size:3
Alignment explanation
Indices: 7954413--7954449 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
7954403 TATTTACTCG
7954413 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7954450 TAACATATGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7958953 original size:79 final size:79
Alignment explanation
Indices: 7958790--7958945 Score: 258
Period size: 79 Copynumber: 2.0 Consensus size: 79
7958780 GGAACAATGA
* *
7958790 ATAAATAAAAAATTCACTTGCATTTCACTTTAATTATGTCATTTAAATATTTTTATATGCTCTGT
1 ATAAATAAAAAATTCACTTGCATCTCACTTTAATTATGTCATTTAAATATGTTTATATGCTCTGT
7958855 ATATATTATTTTCG
66 ATATATTATTTTCG
* * * *
7958869 ATAAATAAAATATTTACTTGCATCTCACTTTAATTATGTCATTTAATTATGTTTATATGTTCTGT
1 ATAAATAAAAAATTCACTTGCATCTCACTTTAATTATGTCATTTAAATATGTTTATATGCTCTGT
7958934 ATATATTATTTT
66 ATATATTATTTT
7958946 TTATAAATTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
79 71 1.00
ACGTcount: A:0.33, C:0.10, G:0.06, T:0.50
Consensus pattern (79 bp):
ATAAATAAAAAATTCACTTGCATCTCACTTTAATTATGTCATTTAAATATGTTTATATGCTCTGT
ATATATTATTTTCG
Found at i:7959564 original size:17 final size:18
Alignment explanation
Indices: 7959531--7959569 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
7959521 TTTTTTTTTG
*
7959531 AAAAAAAGGTAAAAAAA-
1 AAAAAAAGGCAAAAAAAT
*
7959548 AAAAAAAGGCAAGAAAAT
1 AAAAAAAGGCAAAAAAAT
7959566 AAAA
1 AAAA
7959570 TTTTTGATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.79, C:0.03, G:0.13, T:0.05
Consensus pattern (18 bp):
AAAAAAAGGCAAAAAAAT
Found at i:7960868 original size:13 final size:13
Alignment explanation
Indices: 7960838--7960870 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
7960828 CATGGCAAAT
*
7960838 GAAAAAAAAAAAA
1 GAAAAAGAAAAAA
7960851 G-AAAAGAAAAAA
1 GAAAAAGAAAAAA
7960863 GAAAAAGA
1 GAAAAAGA
7960871 TTGTTGATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (13 bp):
GAAAAAGAAAAAA
Found at i:7962982 original size:44 final size:44
Alignment explanation
Indices: 7962896--7962982 Score: 106
Period size: 44 Copynumber: 2.0 Consensus size: 44
7962886 AATGTGAGTT
* * **
7962896 AGAATTTTTTACTTTTAGATGTGAGTTTTTAAATTTTTCAAATG
1 AGAATCTTTGACTTTTAGATGTGAGTTTTTAAATTTCCCAAATG
7962940 AGAATCTTTGACTTTTAGATGTG-GATCTTTT-AATTTCCCAAAT
1 AGAATCTTTGACTTTTAGATGTGAG-T-TTTTAAATTTCCCAAAT
7962983 ATAAATCCTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
43 1 0.03
44 32 0.86
45 4 0.11
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.48
Consensus pattern (44 bp):
AGAATCTTTGACTTTTAGATGTGAGTTTTTAAATTTCCCAAATG
Found at i:7963042 original size:111 final size:112
Alignment explanation
Indices: 7962925--7963144 Score: 273
Period size: 112 Copynumber: 2.0 Consensus size: 112
7962915 TGTGAGTTTT
* * * * * * *
7962925 TAAATTTTTCAAA-TGAGAATCTTTGACTTTTAGATGTGGATCTTTTAA-TTTCCCAAATATAAA
1 TAAATTTTT-AAAGTGAAAATCTTTGACCTTTAAATATGAATCTCTAAACTTTCCCAAATATAAA
* *
7962988 TCCTTGAACTTTTTAAATAAGAACCTTTTATTTTTAAATATGAATAGG
65 TCCTTGAACTTTTCAAATAAGAACCTTTGATTTTTAAATATGAATAGG
* *
7963036 TAAATTTTTAAAGTGAAAATCTTTGACCTTTAAATATGAATCTCTAAACTTTCCCAAATGTGAAT
1 TAAATTTTTAAAGTGAAAATCTTTGACCTTTAAATATGAATCTCTAAACTTTCCCAAATATAAAT
** * * *
7963101 TTTTGAACTTTTCAAATAAGAGCCTTTGATTTTTAGATGTGAAT
66 CCTTGAACTTTTCAAATAAGAACCTTTGATTTTTAAATATGAAT
7963145 CTTTGAACCC
Statistics
Matches: 91, Mismatches: 16, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
110 3 0.03
111 37 0.41
112 51 0.56
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.42
Consensus pattern (112 bp):
TAAATTTTTAAAGTGAAAATCTTTGACCTTTAAATATGAATCTCTAAACTTTCCCAAATATAAAT
CCTTGAACTTTTCAAATAAGAACCTTTGATTTTTAAATATGAATAGG
Found at i:7963324 original size:73 final size:73
Alignment explanation
Indices: 7963244--7963422 Score: 189
Period size: 74 Copynumber: 2.4 Consensus size: 73
7963234 GAATATTTGG
* * * *
7963244 TTTTTAAATGCTAATCTTTAATTTTTATATGT-TAAATGAGAAACTTTGACTCTTAAACATGAAT
1 TTTTTAAATG-TAATCTTTAATTTTTAAATGTAAAAATAAGAAACTTTGACTCTTAAACATAAAT
7963308 CTCTGAAAT
65 CTCTGAAAT
* * * * * **
7963317 TTTTTAAATGAAAATCTTTGATTTTTAAATGTAAAAATAAGAATCTTTGACTTTTAGATGTAAAT
1 TTTTTAAATG-TAATCTTTAATTTTTAAATGTAAAAATAAGAAACTTTGACTCTTAAACATAAAT
*
7963382 CTGTGAAAT
65 CTCTGAAAT
* * *
7963391 TTTTTAAAAGTGAATATTTAATTTTTAGATGT
1 TTTTTAAATGT-AATCTTTAATTTTTAAATGT
7963423 GAATCTTTAA
Statistics
Matches: 86, Mismatches: 18, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
73 28 0.33
74 58 0.67
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.45
Consensus pattern (73 bp):
TTTTTAAATGTAATCTTTAATTTTTAAATGTAAAAATAAGAAACTTTGACTCTTAAACATAAATC
TCTGAAAT
Found at i:7963417 original size:21 final size:21
Alignment explanation
Indices: 7963391--7963434 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
7963381 TCTGTGAAAT
7963391 TTTTTAAAAGTGAATATTTAA
1 TTTTTAAAAGTGAATATTTAA
* * *
7963412 TTTTTAGATGTGAATCTTTAA
1 TTTTTAAAAGTGAATATTTAA
7963433 TT
1 TT
7963435 CTTATATGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.02, G:0.11, T:0.52
Consensus pattern (21 bp):
TTTTTAAAAGTGAATATTTAA
Found at i:7963443 original size:21 final size:21
Alignment explanation
Indices: 7963400--7963443 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
7963390 TTTTTTAAAA
*
7963400 GTGAATATTTAATTTTTAGAT
1 GTGAATATTTAATTCTTAGAT
* *
7963421 GTGAATCTTTAATTCTTATAT
1 GTGAATATTTAATTCTTAGAT
7963442 GT
1 GT
7963444 TAAATAAGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.30, C:0.05, G:0.14, T:0.52
Consensus pattern (21 bp):
GTGAATATTTAATTCTTAGAT
Found at i:7964554 original size:83 final size:82
Alignment explanation
Indices: 7964403--7964684 Score: 246
Period size: 83 Copynumber: 3.4 Consensus size: 82
7964393 AATCATTTAG
* * * * * * *** *
7964403 GCAAGATTCGTAAGTCTTTTAAGTTGAATTTGTTGTAGTGTTAAGATTTGTAAGACTTTTTGGAA
1 GCAAGATTCATAAGTTTTTTAAGTTGAATCTATTTTAGTGTTAAGATTTGTAAGACCTTCAAGCA
7964468 TAGTCTCTAAGTTTCCAA
66 TAGTCTCTAAG-TTCCAA
* * *
7964486 GCAAGATTCATAAGTTTTTTGAGTTGAATCTATTTTAGTGTTGAGAATTGTAAGACCTTCAAGCA
1 GCAAGATTCATAAGTTTTTTAAGTTGAATCTATTTTAGTGTTAAGATTTGTAAGACCTTCAAGCA
**
7964551 TAGTCTCTAAGTCCTCTGA
66 TAGTCTCTAAGT--TCCAA
* ** * * * * * *
7964570 G-TAGATTTTTTAGTTTTTAAAGCTAAATCTGTTTTAATGTTAAGATTTGTAAGACCTTCAAGCA
1 GCAAGATTCATAAGTTTTTTAAGTTGAATCTATTTTAGTGTTAAGATTTGTAAGACCTTCAAGCA
7964634 TAGTCTCTAAG-TCCTTATA
66 TAGTCTCTAAGTTCC--A-A
** *
7964653 -CAAGATTCATAAGTTTTTGGAGTAGAATCTAT
1 GCAAGATTCATAAGTTTTTTAAGTTGAATCTAT
7964685 AATGTTGCAA
Statistics
Matches: 154, Mismatches: 39, Indels: 12
0.75 0.19 0.06
Matches are distributed among these distances:
80 2 0.01
82 1 0.01
83 147 0.95
84 4 0.03
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (82 bp):
GCAAGATTCATAAGTTTTTTAAGTTGAATCTATTTTAGTGTTAAGATTTGTAAGACCTTCAAGCA
TAGTCTCTAAGTTCCAA
Found at i:7964933 original size:49 final size:48
Alignment explanation
Indices: 7964875--7965036 Score: 168
Period size: 49 Copynumber: 3.3 Consensus size: 48
7964865 TTATGATCAA
7964875 TTTTAAAGTTGTGGAGCCCCTTGTGAGAGGAGTTTTCATTTCAATTTAT
1 TTTTAAAGTTGTGGAG-CCCTTGTGAGAGGAGTTTTCATTTCAATTTAT
* * *
7964924 TTTTAAAGTTATGGAGTCTTTG-GTAGGAGGAGTTTTCATTTCAATTTAT
1 TTTTAAAGTTGTGGAGCCCTTGTG-A-GAGGAGTTTTCATTTCAATTTAT
* * * * * *
7964973 TTTTAAAGTTGTGGAGTCTCTAGTTAGA-GAGAATTTCATTTTAATTAAT
1 TTTTAAAGTTGTGGAG-CCCTTGTGAGAGGAG-TTTTCATTTCAATTTAT
7965022 TTTCT-AAGTTGTGGA
1 TTT-TAAAGTTGTGGA
7965037 CCTCTAACAA
Statistics
Matches: 95, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
47 1 0.01
48 8 0.08
49 82 0.86
50 4 0.04
ACGTcount: A:0.25, C:0.08, G:0.22, T:0.45
Consensus pattern (48 bp):
TTTTAAAGTTGTGGAGCCCTTGTGAGAGGAGTTTTCATTTCAATTTAT
Found at i:7969314 original size:15 final size:15
Alignment explanation
Indices: 7969282--7969315 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7969272 AAAAAGTAAA
*
7969282 AAAATATAAAAAATT
1 AAAATATAAAAAAGT
*
7969297 AAAATATAAAAAGGT
1 AAAATATAAAAAAGT
7969312 AAAA
1 AAAA
7969316 ATTTTAGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (15 bp):
AAAATATAAAAAAGT
Found at i:7974298 original size:81 final size:81
Alignment explanation
Indices: 7974164--7974324 Score: 268
Period size: 81 Copynumber: 2.0 Consensus size: 81
7974154 ACTATCTTTT
* *
7974164 TCATCAGATGTGTTTTCATCGGATGAAGGTGGTTCATCCTTAACTACTGGGTTAGTAGCAAGAAT
1 TCATCAGATGTGTTTTCATCGGATAAAGGTGGTTCATCCTTAACTACTAGGTTAGTAGCAAGAAT
7974229 TTCAAAATTATCTTCC
66 TTCAAAATTATCTTCC
* * *
7974245 TCATTAGATGTGTTTTCATCGGATAAAGGTGGTTCATCCTTGACTATTAGGTTAGTAGCAAGAAT
1 TCATCAGATGTGTTTTCATCGGATAAAGGTGGTTCATCCTTAACTACTAGGTTAGTAGCAAGAAT
*
7974310 TTTAAAATTATCTTC
66 TTCAAAATTATCTTC
7974325 AACTATATCA
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (81 bp):
TCATCAGATGTGTTTTCATCGGATAAAGGTGGTTCATCCTTAACTACTAGGTTAGTAGCAAGAAT
TTCAAAATTATCTTCC
Found at i:7975216 original size:16 final size:17
Alignment explanation
Indices: 7975195--7975230 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
7975185 AAAAGAGATT
7975195 AGAGAGAGAAAGTGT-A
1 AGAGAGAGAAAGTGTGA
7975211 AGAGAGAGAAAGTGTGA
1 AGAGAGAGAAAGTGTGA
7975228 AGA
1 AGA
7975231 ATTGGCCTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.50, C:0.00, G:0.39, T:0.11
Consensus pattern (17 bp):
AGAGAGAGAAAGTGTGA
Found at i:7983641 original size:235 final size:235
Alignment explanation
Indices: 7983227--7983938 Score: 1325
Period size: 235 Copynumber: 3.0 Consensus size: 235
7983217 CATTTGTTGG
* *
7983227 TGATACCCTGTAGCAGTATTCTTATCGTACTTGGCTAAAACAACATGTAATCTCCAATTATTCTA
1 TGATACCCTGTAGCAGTATTCTTATTGTACTTGGCT--AA-AACATGTAATCTCCAGTTATTCTA
7983292 GTAGTAACCATTTAAAGCTCTGATAATTTATAGTGCTTCTCTTAGGTCTTTGAATCAAAAGAAAT
63 GTAGTAACCATTTAAAGCTCTGATAATTTATAGTGCTTCTCTTAGGTCTTTGAATCAAAAGAAAT
*
7983357 TGAACTTACTTCTTCTTGGCTTTTTTCAGTTTAAAGGAATATAGAAATCCATAATTCTACCACGT
128 TGAACTTACTTCTTCTTGGCTTTTTCCAGTTTAAAGGAATATAGAAATCCATAATTCTACCACGT
*
7983422 TTCATAATCAGGTCCAACATGTCTCCTTTTTTACCCTTTGGGT
193 TTCATAATCAGGTCCGACATGTCTCCTTTTTTACCCTTTGGGT
7983465 TGATACCCTGTAGCAGTATTCTTATTGTACTTGGCTAAAACATGTAATCTCCAGTTATTCTAGTA
1 TGATACCCTGTAGCAGTATTCTTATTGTACTTGGCTAAAACATGTAATCTCCAGTTATTCTAGTA
*
7983530 GTAACTATTTAAAGCTCTGATAATTTATAGTGCTTCTCTTAGGTCTTTGAATCAAAAGAAATTGA
66 GTAACCATTTAAAGCTCTGATAATTTATAGTGCTTCTCTTAGGTCTTTGAATCAAAAGAAATTGA
*
7983595 ACTTACTTCTTCTTGGGTTTTTCCAGTTTAAAGGAATATAGAAATCCATAATTCTACCACGTTTC
131 ACTTACTTCTTCTTGGCTTTTTCCAGTTTAAAGGAATATAGAAATCCATAATTCTACCACGTTTC
7983660 ATAATCAGGTCCGACATGTCTCCTTTTTTACCCTTTGGGT
196 ATAATCAGGTCCGACATGTCTCCTTTTTTACCCTTTGGGT
7983700 TGATACCCTGTAGCAGTATTCTTATTGTACTTGGCTAAAACATGTAATCTCCAGTTATTCTAGTA
1 TGATACCCTGTAGCAGTATTCTTATTGTACTTGGCTAAAACATGTAATCTCCAGTTATTCTAGTA
7983765 GTAACCATTTAAAGCTCTGATAATTTATAGTGCTTCTCTTAGGTCTTTGAATCAAAAGAAATTGA
66 GTAACCATTTAAAGCTCTGATAATTTATAGTGCTTCTCTTAGGTCTTTGAATCAAAAGAAATTGA
* *
7983830 ACTTACTTCTTCTTAGCTTTTTCCAGTTTAAATGAATATAGAAATCCATAATTCTACCACGTTTC
131 ACTTACTTCTTCTTGGCTTTTTCCAGTTTAAAGGAATATAGAAATCCATAATTCTACCACGTTTC
7983895 ATAATCAGGTCCGACATGTCTCCTTTTTTACCCTTTGGGT
196 ATAATCAGGTCCGACATGTCTCCTTTTTTACCCTTTGGGT
7983935 TGAT
1 TGAT
7983939 GTTATCAATA
Statistics
Matches: 464, Mismatches: 10, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
235 427 0.92
236 2 0.00
238 35 0.08
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (235 bp):
TGATACCCTGTAGCAGTATTCTTATTGTACTTGGCTAAAACATGTAATCTCCAGTTATTCTAGTA
GTAACCATTTAAAGCTCTGATAATTTATAGTGCTTCTCTTAGGTCTTTGAATCAAAAGAAATTGA
ACTTACTTCTTCTTGGCTTTTTCCAGTTTAAAGGAATATAGAAATCCATAATTCTACCACGTTTC
ATAATCAGGTCCGACATGTCTCCTTTTTTACCCTTTGGGT
Found at i:7987370 original size:14 final size:15
Alignment explanation
Indices: 7987348--7987378 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
7987338 TAAGTTTTAG
7987348 CAACGAATTTTTTGT
1 CAACGAATTTTTTGT
7987363 CAAC-AATTTTTTGT
1 CAACGAATTTTTTGT
7987377 CA
1 CA
7987379 CTAAAAGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.29, C:0.16, G:0.10, T:0.45
Consensus pattern (15 bp):
CAACGAATTTTTTGT
Found at i:7988961 original size:11 final size:11
Alignment explanation
Indices: 7988945--7988986 Score: 75
Period size: 11 Copynumber: 3.8 Consensus size: 11
7988935 AATCCCATAA
7988945 GAGATTTGTTT
1 GAGATTTGTTT
*
7988956 GAGATTTGTTA
1 GAGATTTGTTT
7988967 GAGATTTGTTT
1 GAGATTTGTTT
7988978 GAGATTTGT
1 GAGATTTGT
7988987 CAGATATTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:7988972 original size:22 final size:22
Alignment explanation
Indices: 7988944--7988986 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
7988934 AAATCCCATA
7988944 AGAGATTTGTTTGAGATTTGTT
1 AGAGATTTGTTTGAGATTTGTT
7988966 AGAGATTTGTTTGAGATTTGT
1 AGAGATTTGTTTGAGATTTGT
7988987 CAGATATTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (22 bp):
AGAGATTTGTTTGAGATTTGTT
Found at i:7989099 original size:52 final size:52
Alignment explanation
Indices: 7989011--7989167 Score: 217
Period size: 52 Copynumber: 3.0 Consensus size: 52
7989001 TGGACAAGAA
* * *
7989011 GACTTGCAAAAGAAGAATTCCAAGA-GAAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGA-GATTCTTAATAGGCAAGTTT
*
7989063 GACTTGCAAGAGAAGAATTCTAAAAGGAAAGAGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTT
* * * * *
7989115 GATTTACAAGAGAAGAATTCTAAGAGGAGAGGGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTT
7989167 G
1 G
7989168 TATGGTTATA
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
52 88 0.94
53 6 0.06
ACGTcount: A:0.40, C:0.09, G:0.25, T:0.25
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTT
Found at i:7989738 original size:25 final size:24
Alignment explanation
Indices: 7989710--7989812 Score: 93
Period size: 25 Copynumber: 4.2 Consensus size: 24
7989700 TGAAACATGA
* *
7989710 GAAGAGTTGAAGATTCAAGATGTGG
1 GAAGAGTTGAAG-TTCGAGATATGG
* * *
7989735 GAAGAGCTGATGGTTCGAGACATGG
1 GAAGAGTTGA-AGTTCGAGATATGG
7989760 GAAGAGTTGACAGTTCGAGATATGG
1 GAAGAGTTGA-AGTTCGAGATATGG
* *
7989785 GAAGAGCTTG--GTTTGAGACATGG
1 GAAGAG-TTGAAGTTCGAGATATGG
7989808 GAAGA
1 GAAGA
7989813 AGTAAGCTTA
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
23 16 0.25
25 45 0.69
26 4 0.06
ACGTcount: A:0.32, C:0.08, G:0.38, T:0.22
Consensus pattern (24 bp):
GAAGAGTTGAAGTTCGAGATATGG
Found at i:7989764 original size:50 final size:48
Alignment explanation
Indices: 7989704--7989812 Score: 148
Period size: 50 Copynumber: 2.2 Consensus size: 48
7989694 AAGTTTTGAA
* *
7989704 ACATGAGAAGAGTTGA-AGATTCAAGATGTGGGAAGAGCTGATGGTTCGAG
1 ACATGGGAAGAGTTGACAG-TTCAAGATATGGGAAGAGCT--TGGTTCGAG
* *
7989754 ACATGGGAAGAGTTGACAGTTCGAGATATGGGAAGAGCTTGGTTTGAG
1 ACATGGGAAGAGTTGACAGTTCAAGATATGGGAAGAGCTTGGTTCGAG
7989802 ACATGGGAAGA
1 ACATGGGAAGA
7989813 AGTAAGCTTA
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
48 19 0.35
50 33 0.61
51 2 0.04
ACGTcount: A:0.33, C:0.08, G:0.37, T:0.22
Consensus pattern (48 bp):
ACATGGGAAGAGTTGACAGTTCAAGATATGGGAAGAGCTTGGTTCGAG
Found at i:7990046 original size:11 final size:11
Alignment explanation
Indices: 7990030--7990071 Score: 75
Period size: 11 Copynumber: 3.8 Consensus size: 11
7990020 AATCCCATAA
7990030 GAGATTTGTTT
1 GAGATTTGTTT
*
7990041 GAGATTTGTTA
1 GAGATTTGTTT
7990052 GAGATTTGTTT
1 GAGATTTGTTT
7990063 GAGATTTGT
1 GAGATTTGT
7990072 CAGATATTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:7990057 original size:22 final size:22
Alignment explanation
Indices: 7990029--7990071 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
7990019 AAATCCCATA
7990029 AGAGATTTGTTTGAGATTTGTT
1 AGAGATTTGTTTGAGATTTGTT
7990051 AGAGATTTGTTTGAGATTTGT
1 AGAGATTTGTTTGAGATTTGT
7990072 CAGATATTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (22 bp):
AGAGATTTGTTTGAGATTTGTT
Found at i:7990184 original size:52 final size:52
Alignment explanation
Indices: 7990096--7990252 Score: 226
Period size: 52 Copynumber: 3.0 Consensus size: 52
7990086 TGGACAAGAA
* *
7990096 GACTTGCAAAAGAAGAATTCTAAGA-GAAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGA-GATTCTTAATAGGCAAGTTT
*
7990148 GACTTGCAAGAGAAGAATTCTAAAAGGAAAGAGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTT
* * * * *
7990200 GATTTACAAGAGAAGAATTCTAAGAGGAGAGGGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTT
7990252 G
1 G
7990253 TATGGTTATA
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
52 89 0.94
53 6 0.06
ACGTcount: A:0.40, C:0.08, G:0.25, T:0.26
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGGCAAGTTT
Found at i:7992359 original size:18 final size:16
Alignment explanation
Indices: 7992335--7992383 Score: 53
Period size: 18 Copynumber: 2.9 Consensus size: 16
7992325 TAAAAAAAAA
7992335 TATTTTTTTTTATTTT
1 TATTTTTTTTTATTTT
* *
7992351 CTAATTTTTTTATATTAT
1 -T-ATTTTTTTTTATTTT
*
7992369 TATTTTTGTTTATTT
1 TATTTTTTTTTATTT
7992384 AAGTACATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
16 11 0.42
17 2 0.08
18 13 0.50
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.78
Consensus pattern (16 bp):
TATTTTTTTTTATTTT
Found at i:7992829 original size:16 final size:16
Alignment explanation
Indices: 7992806--7992879 Score: 132
Period size: 16 Copynumber: 4.7 Consensus size: 16
7992796 CTTAAACTCT
7992806 TAAAATCCAAAATCCC
1 TAAAATCCAAAATCCC
*
7992822 TTAAATCCAAAATCCC
1 TAAAATCCAAAATCCC
7992838 TAAAATCCAAAAT-CC
1 TAAAATCCAAAATCCC
7992853 TAAAATCCAAAATCCC
1 TAAAATCCAAAATCCC
7992869 TAAAATCCAAA
1 TAAAATCCAAA
7992880 CCCTTAAATC
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
15 15 0.27
16 40 0.73
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.20
Consensus pattern (16 bp):
TAAAATCCAAAATCCC
Found at i:7992862 original size:31 final size:32
Alignment explanation
Indices: 7992806--7992879 Score: 132
Period size: 31 Copynumber: 2.3 Consensus size: 32
7992796 CTTAAACTCT
*
7992806 TAAAATCCAAAATCCCTTAAATCCAAAATCCC
1 TAAAATCCAAAATCCCTAAAATCCAAAATCCC
7992838 TAAAATCCAAAAT-CCTAAAATCCAAAATCCC
1 TAAAATCCAAAATCCCTAAAATCCAAAATCCC
7992869 TAAAATCCAAA
1 TAAAATCCAAA
7992880 CCCTTAAATC
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
31 28 0.68
32 13 0.32
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.20
Consensus pattern (32 bp):
TAAAATCCAAAATCCCTAAAATCCAAAATCCC
Found at i:7992931 original size:16 final size:16
Alignment explanation
Indices: 7992910--7992940 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7992900 ACTTTAAAAC
7992910 CCAAACCCTAAAATCT
1 CCAAACCCTAAAATCT
*
7992926 CCAAACTCTAAAATC
1 CCAAACCCTAAAATC
7992941 AAAACCCTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.35, G:0.00, T:0.19
Consensus pattern (16 bp):
CCAAACCCTAAAATCT
Found at i:7998288 original size:14 final size:14
Alignment explanation
Indices: 7998271--7998326 Score: 58
Period size: 14 Copynumber: 3.7 Consensus size: 14
7998261 TGGGGCATAA
*
7998271 AAAAATAAAAAAAC
1 AAAAACAAAAAAAC
7998285 AAAAACAAAAAAAC
1 AAAAACAAAAAAAC
*
7998299 AAAACAAGCAAAAAAAAA
1 -AAA-AA-C-AAAAAAAC
7998317 AAAAACAAAA
1 AAAAACAAAA
7998327 GGGACATATT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
14 17 0.47
15 4 0.11
16 4 0.11
17 4 0.11
18 7 0.19
ACGTcount: A:0.86, C:0.11, G:0.02, T:0.02
Consensus pattern (14 bp):
AAAAACAAAAAAAC
Found at i:7998296 original size:8 final size:8
Alignment explanation
Indices: 7998269--7998326 Score: 68
Period size: 8 Copynumber: 7.5 Consensus size: 8
7998259 GATGGGGCAT
*
7998269 AAAAAAAT
1 AAAAAAAC
7998277 AAAAAAAC
1 AAAAAAAC
7998285 --AAAAAC
1 AAAAAAAC
7998291 AAAAAAAC
1 AAAAAAAC
*
7998299 AAAACAAGC
1 AAAA-AAAC
7998308 AAAAAAA-
1 AAAAAAAC
7998315 AAAAAAAC
1 AAAAAAAC
7998323 AAAA
1 AAAA
7998327 GGGACATATT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
6 6 0.14
7 7 0.16
8 23 0.53
9 7 0.16
ACGTcount: A:0.86, C:0.10, G:0.02, T:0.02
Consensus pattern (8 bp):
AAAAAAAC
Found at i:7998628 original size:7 final size:7
Alignment explanation
Indices: 7998616--7998646 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
7998606 CAATTGAAAT
7998616 TTCAAGA
1 TTCAAGA
7998623 TTCAAGA
1 TTCAAGA
7998630 TTCAAGA
1 TTCAAGA
7998637 TTTCAAGA
1 -TTCAAGA
7998645 TT
1 TT
7998647 AGGAAAAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (7 bp):
TTCAAGA
Found at i:7998643 original size:15 final size:14
Alignment explanation
Indices: 7998616--7998646 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
7998606 CAATTGAAAT
7998616 TTCAAGATTCAAGA
1 TTCAAGATTCAAGA
7998630 TTCAAGATTTCAAGA
1 TTCAAGA-TTCAAGA
7998645 TT
1 TT
7998647 AGGAAAAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (14 bp):
TTCAAGATTCAAGA
Found at i:7999175 original size:12 final size:12
Alignment explanation
Indices: 7999158--7999203 Score: 60
Period size: 12 Copynumber: 3.9 Consensus size: 12
7999148 TAAAAAAATA
7999158 AAAAAACAAAAC
1 AAAAAACAAAAC
7999170 AAAAAACAAAAC
1 AAAAAACAAAAC
*
7999182 AAGCAAA-AAAA-
1 AA-AAAACAAAAC
7999193 AAAAAACAAAA
1 AAAAAACAAAA
7999204 GGGACATATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
10 3 0.10
11 6 0.20
12 18 0.60
13 3 0.10
ACGTcount: A:0.85, C:0.13, G:0.02, T:0.00
Consensus pattern (12 bp):
AAAAAACAAAAC
Found at i:8000951 original size:41 final size:41
Alignment explanation
Indices: 8000906--8000989 Score: 123
Period size: 41 Copynumber: 2.0 Consensus size: 41
8000896 TTTTAAAGTT
* **
8000906 TCTGTTTCAGAAGAACCGTTTTCAATCAAGATTTCAAAGCC
1 TCTGTTTAAGAAGAACCAATTTCAATCAAGATTTCAAAGCC
* *
8000947 TCTGTTTAAGAGGAATCAATTTCAATCAAGATTTCAAAGCC
1 TCTGTTTAAGAAGAACCAATTTCAATCAAGATTTCAAAGCC
8000988 TC
1 TC
8000990 CATTTAGAGG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.32
Consensus pattern (41 bp):
TCTGTTTAAGAAGAACCAATTTCAATCAAGATTTCAAAGCC
Found at i:8001511 original size:23 final size:23
Alignment explanation
Indices: 8001475--8001539 Score: 87
Period size: 23 Copynumber: 2.9 Consensus size: 23
8001465 TATCCTAGTC
*
8001475 GATTCTGTAAGACCTCCGAGCAT
1 GATTCTATAAGACCTCCGAGCAT
*
8001498 GATTCTATATGACCTCCGAGCAT
1 GATTCTATAAGACCTCCGAGCAT
**
8001521 GATT-TCGAAGACCTCCGAG
1 GATTCTATAAGACCTCCGAG
8001540 AATAAATTCG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
22 12 0.32
23 25 0.68
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (23 bp):
GATTCTATAAGACCTCCGAGCAT
Found at i:8001549 original size:22 final size:22
Alignment explanation
Indices: 8001508--8001550 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8001498 GATTCTATAT
* * *
8001508 GACCTCCGAGCATGATTTCGAA
1 GACCTCCGAGAATAAATTCGAA
8001530 GACCTCCGAGAATAAATTCGA
1 GACCTCCGAGAATAAATTCGA
8001551 TTCGCAGTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.21
Consensus pattern (22 bp):
GACCTCCGAGAATAAATTCGAA
Found at i:8001608 original size:133 final size:131
Alignment explanation
Indices: 8001366--8001632 Score: 358
Period size: 133 Copynumber: 2.0 Consensus size: 131
8001356 ATCTCAGTCA
* * * * *
8001366 ATTCTATAAGACCTCTAGACATGATTTCTAAGACCTCTAGGCATAAATTCGATTCGCGGTGTTAT
1 ATTCTATAAGACCTCGAGACATGATTTCGAAGACCTCGAGGAATAAATTCGATTCGCAGTGTTAT
* ** * *
8001431 CCCGATCGATTCTTTATCTTTTAACTTGTGGTGTTATCCTAGTCGATTCTGTAAGACCTCCGAGC
66 CCCAATCGATTCTTTATCTTTTAACTTACGGTGTTATCCCAGTCGATT-T-TAAAACCTCCGAGC
8001496 ATG
129 ATG
*
8001499 ATTCTATATGACCTCCGAG-CATGATTTCGAAGACCTCCGA-GAATAAATTCGATTCGCAGTGTT
1 ATTCTATAAGACCT-CGAGACATGATTTCGAAGACCT-CGAGGAATAAATTCGATTCGCAGTGTT
* * *
8001562 ATCCTAATCGATTCTTTATCTTTTGACTTACGGTGTTATCCCAGTCGATTTTAAAACCTCCGGGC
64 ATCCCAATCGATTCTTTATCTTTTAACTTACGGTGTTATCCCAGTCGATTTTAAAACCTCCGAGC
8001627 ATG
129 ATG
8001630 ATT
1 ATT
8001633 TTTGAGACCT
Statistics
Matches: 118, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
131 18 0.15
132 1 0.01
133 94 0.80
134 5 0.04
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (131 bp):
ATTCTATAAGACCTCGAGACATGATTTCGAAGACCTCGAGGAATAAATTCGATTCGCAGTGTTAT
CCCAATCGATTCTTTATCTTTTAACTTACGGTGTTATCCCAGTCGATTTTAAAACCTCCGAGCAT
G
Found at i:8001747 original size:22 final size:22
Alignment explanation
Indices: 8001722--8001787 Score: 96
Period size: 22 Copynumber: 3.0 Consensus size: 22
8001712 GTCAATTCTG
8001722 TAAGACCTCCGGGCATGATTTC
1 TAAGACCTCCGGGCATGATTTC
** *
8001744 TAAGACCTCCGAACATGTTTTC
1 TAAGACCTCCGGGCATGATTTC
*
8001766 TAAGACCTCCGGGCATAATTTC
1 TAAGACCTCCGGGCATGATTTC
8001788 GATTTACGAT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (22 bp):
TAAGACCTCCGGGCATGATTTC
Found at i:8001809 original size:131 final size:132
Alignment explanation
Indices: 8001637--8001887 Score: 389
Period size: 132 Copynumber: 1.9 Consensus size: 132
8001627 ATGATTTTTG
* * *
8001637 AGACCTCCAGGTATAATTTTGATTCACGATGTTGTCCCGATCGATTCTTTA--TTTCTAACTTGC
1 AGACCTCCAGGCATAATTTCGATTCACGATATTGTCCCGATCGATTCTTTATCTTTC-AACTTGC
* *
8001700 GGTGTTATCCCAGTCAATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGAACATGTTTT
65 GATGTTATCCCAGTCAATTCTGTAAGACCTCCGAGCATGATTTCTAAGACCTCCGAACATGTTTT
8001765 CTA
130 CTA
* * ** *
8001768 AGACCTCCGGGCATAATTTCGATTTACGATATTGTTTCGATCGATTCTTTATCTTTCGACTTGCG
1 AGACCTCCAGGCATAATTTCGATTCACGATATTGTCCCGATCGATTCTTTATCTTTCAACTTGCG
8001833 ATGTTATCCCAGTCAATTCTGTAAGACCTCCGAGCATGATTTCTAAGACCTCCGA
66 ATGTTATCCCAGTCAATTCTGTAAGACCTCCGAGCATGATTTCTAAGACCTCCGA
8001888 GCATAATTTC
Statistics
Matches: 108, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
131 44 0.41
132 60 0.56
133 4 0.04
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (132 bp):
AGACCTCCAGGCATAATTTCGATTCACGATATTGTCCCGATCGATTCTTTATCTTTCAACTTGCG
ATGTTATCCCAGTCAATTCTGTAAGACCTCCGAGCATGATTTCTAAGACCTCCGAACATGTTTTC
TA
Found at i:8001879 original size:22 final size:22
Alignment explanation
Indices: 8001854--8001897 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
8001844 GTCAATTCTG
*
8001854 TAAGACCTCCGAGCATGATTTC
1 TAAGACCTCCGAGCATAATTTC
8001876 TAAGACCTCCGAGCATAATTTC
1 TAAGACCTCCGAGCATAATTTC
8001898 GATTCGCGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (22 bp):
TAAGACCTCCGAGCATAATTTC
Found at i:8001915 original size:241 final size:242
Alignment explanation
Indices: 8001326--8002481 Score: 1006
Period size: 241 Copynumber: 4.6 Consensus size: 242
8001316 AATTGTCCCT
* * * * *
8001326 ATCGATTCTTTAT-TTTTGAATTGCGGTGTTATCTCAGTCAATTCTATAAGACCT-CTAGACATG
1 ATCGATTCTTTATCTTTCGACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGAG-CATG
* * * *
8001389 ATTTCTAAGACCTCTAGGCATAAATTCGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTTA
65 ATTTCTAAGACCTCCAGGCATAATTTCGATTCGCGATGTTATCCCGATCGATTCTTTAT-TTTTG
* * * *
8001454 ACTTGTGGTGTTATCCTAGTCGATTCTGTAAGACCTCCGAGCATGA-TTCTATATGACCTCCGAG
129 ACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGAGCATGATTTCTA-A-GACCTCCGAA
* * * * * * *
8001518 CATGATTTCGAAGACCTCCGAGAATAAATTCGA-TT-CG-CAGTGTTATCCTA
192 CATGATTTCTAAGACCTCCGGGCATAATTTCGATTTACGATATTGTTAT-C-G
* * * * *
8001568 ATCGATTCTTTATCTTTTGACTTACGGTGTTATCCCAGTCGATT-T-TAAAACCTCCGGGCATGA
1 ATCGATTCTTTATCTTTCGACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGAGCATGA
* * * * * * * *
8001631 TTTTTGAGACCTCCAGGTATAATTTTGATTCACGATGTTGTCCCGATCGATTCTTTATTTCTAAC
66 TTTCTAAGACCTCCAGGCATAATTTCGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTGAC
*
8001696 TTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGAACATG
131 TTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGAGCATGATTTCTAAGACCTCCGAACATG
*
8001761 TTTTCTAAGACCTCCGGGCATAATTTCGATTTACGATATTGTT-TCG
196 ATTTCTAAGACCTCCGGGCATAATTTCGATTTACGATATTGTTATCG
*
8001807 ATCGATTCTTTATCTTTCGACTTGCGATGTTATCCCAGTCAATTCTGTAAGACCTCCGAGCATGA
1 ATCGATTCTTTATCTTTCGACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGAGCATGA
* *
8001872 TTTCTAAGACCTCC-GAGCATAATTTCGATTCGCGATATTGTCCCGATCGATTCTTTATTTTTGA
66 TTTCTAAGACCTCCAG-GCATAATTTCGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTGA
* * * **
8001936 CTTGCGGTGTTATCCCAGTCAATTTTGTAAGACCTCCGGGCATGATTCTGTAAGACCTCCGGGCA
130 CTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGAGCATGATT-TCTAAGACCTCCGAACA
* * * * * **
8002001 TGATTTCTAAGACCACTGGGCATAATTTCAATTTACGGTATT-ATCCCG
194 TGATTTCTAAGACCTCCGGGCATAATTTCGATTTACGATATTGTTATCG
* * *
8002049 ATCGATT-TTT-TATTTCTGACCTGTGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGGGCATG
1 ATCGATTCTTTATCTTTC-GACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCT-----C---
* * * *
8002112 ATTCTGTATGACCTCCGGGCATGATTTCTAAGACCTTCAGGCATAATTTCAATTCGTGATATTAT
57 ---C-----GA-------GCATGATTTCTAAGACCTCCAGGCATAATTTCGATTCGCGATGTTAT
* * * * * * *
8002177 CCTGATCGATTCTTTATTTCTGACTTACGGTGTTATCACAATCAATTCTGTAAGACTTCCAAGCA
107 CCCGATCGATTCTTTATTTTTGACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGAGCA
* * * * * * *
8002242 TGATTTCTAAAACCTTCGGACATGATTTTGTAAGACCTCCGGGCATGATTTTTAAGACCTTTGGG
172 TGATTTCTAAGACCTCCGAACATGA-TTTCTAAGACCTCCGGGCAT-A-ATTT-CGA--TTT--A
8002307 CGTAATTTCAATTCGCGGTGTTATCTCG
229 CG--A--T--A-T-----TGTTA--TCG
* * *
8002335 ATCGATTCTTTATTTTTCGACTTACGGTATTATCCCAGTCAATTCTGTAAGACCTCCGAGCATGA
1 ATCGATTCTTTATCTTTCGACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGAGCATGA
* * * * *
8002400 TTTCTAAGACTTCCGGGCATAATTTTGATTCGCGATGTTATCTCGATCGATTCATTATTTTTTGA
66 TTTCTAAGACCTCCAGGCATAATTTCGATTCGCGATGTTATCCCGATCGATTCTTTA-TTTTTGA
*
8002465 CTTGCGGTGTCATCCCA
130 CTTGCGGTGTTATCCCA
8002482 ATCGTTTTGT
Statistics
Matches: 746, Mismatches: 106, Indels: 101
0.78 0.11 0.11
Matches are distributed among these distances:
239 77 0.10
240 57 0.08
241 223 0.30
242 81 0.11
243 26 0.03
246 1 0.00
252 1 0.00
257 2 0.00
263 16 0.02
264 172 0.23
265 22 0.03
266 3 0.00
267 1 0.00
269 3 0.00
271 4 0.01
275 1 0.00
276 1 0.00
277 1 0.00
278 1 0.00
282 1 0.00
283 1 0.00
284 1 0.00
286 9 0.01
287 36 0.05
288 5 0.01
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (242 bp):
ATCGATTCTTTATCTTTCGACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGAGCATGA
TTTCTAAGACCTCCAGGCATAATTTCGATTCGCGATGTTATCCCGATCGATTCTTTATTTTTGAC
TTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGAGCATGATTTCTAAGACCTCCGAACATG
ATTTCTAAGACCTCCGGGCATAATTTCGATTTACGATATTGTTATCG
Found at i:8001984 original size:132 final size:132
Alignment explanation
Indices: 8001848--8002292 Score: 579
Period size: 132 Copynumber: 3.4 Consensus size: 132
8001838 ATCCCAGTCA
* * *
8001848 ATTCTGTAAGACCTCCGAGCATGATTTCTAAGACCTCCGAGCATAATTTCGATTCGCGATATTGT
1 ATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGAGCATAATTTCAATTCGCGATATTAT
* *
8001913 CCCGATCGATTCTTTATTTTTGACTTGCGGTGTTATCCCAGTCAATTTTGTAAGACCTCCGGGCA
66 CCCGATCGATTCTTTATTTCTGACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGGGCA
8001978 TG
131 TG
* * * ** *
8001980 ATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCACTGGGCATAATTTCAATTTACGGTATTAT
1 ATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGAGCATAATTTCAATTCGCGATATTAT
* * *
8002045 CCCGATCGATTTTTTATTTCTGACCTGTGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGGGCA
66 CCCGATCGATTCTTTATTTCTGACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGGGCA
8002110 TG
131 TG
* * *
8002112 ATTCTGTATGACCTCCGGGCATGATTTCTAAGACCTTC-AGGCATAATTTCAATTCGTGATATTA
1 ATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGA-GCATAATTTCAATTCGCGATATTA
* * * * * **
8002176 TCCTGATCGATTCTTTATTTCTGACTTACGGTGTTATCACAATCAATTCTGTAAGACTTCCAAGC
65 TCCCGATCGATTCTTTATTTCTGACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGGGC
8002241 ATG
130 ATG
* * * * * * *
8002244 ATT-TCTAAAACCTTCGGACATGATTTTGTAAGACCTCCGGGCATGATTT
1 ATTCTGTAAGACCTCCGGGCATGA-TTTCTAAGACCTCCGAGCATAATTT
8002293 TTAAGACCTT
Statistics
Matches: 268, Mismatches: 42, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
131 15 0.06
132 253 0.94
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.36
Consensus pattern (132 bp):
ATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGAGCATAATTTCAATTCGCGATATTAT
CCCGATCGATTCTTTATTTCTGACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGGGCA
TG
Found at i:8001990 original size:110 final size:110
Alignment explanation
Indices: 8001744--8002007 Score: 395
Period size: 110 Copynumber: 2.4 Consensus size: 110
8001734 GCATGATTTC
* * * **
8001744 TAAGACCTCCGAACATGTTTTCTAAGACCTCCGGGCATAATTTCGATTTACGATATTGTTTCGAT
1 TAAGACCTCCGAGCATGATTTCTAAGACCTCCGGGCATAATTTCGATTCACGATATTGTCCCGAT
8001809 CGATTCTTTATCTTTCGACTTGCGATGTTATCCCAGTCAATTCTG
66 CGATTCTTTATCTTTCGACTTGCGATGTTATCCCAGTCAATTCTG
* *
8001854 TAAGACCTCCGAGCATGATTTCTAAGACCTCCGAGCATAATTTCGATTCGCGATATTGTCCCGAT
1 TAAGACCTCCGAGCATGATTTCTAAGACCTCCGGGCATAATTTCGATTCACGATATTGTCCCGAT
* * *
8001919 CGATTCTTTAT-TTTTGACTTGCGGTGTTATCCCAGTCAATTTTG
66 CGATTCTTTATCTTTCGACTTGCGATGTTATCCCAGTCAATTCTG
* * *
8001963 TAAGACCTCCGGGCATGATTCTGTAAGACCTCCGGGCATGATTTC
1 TAAGACCTCCGAGCATGATT-TCTAAGACCTCCGGGCATAATTTC
8002008 TAAGACCACT
Statistics
Matches: 139, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
109 49 0.35
110 90 0.65
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (110 bp):
TAAGACCTCCGAGCATGATTTCTAAGACCTCCGGGCATAATTTCGATTCACGATATTGTCCCGAT
CGATTCTTTATCTTTCGACTTGCGATGTTATCCCAGTCAATTCTG
Found at i:8001991 original size:23 final size:22
Alignment explanation
Indices: 8001959--8002028 Score: 95
Period size: 23 Copynumber: 3.1 Consensus size: 22
8001949 CCCAGTCAAT
8001959 TTTGTAAGACCTCCGGGCATGA
1 TTTGTAAGACCTCCGGGCATGA
8001981 TTCTGTAAGACCTCCGGGCATGA
1 TT-TGTAAGACCTCCGGGCATGA
* * * *
8002004 TTTCTAAGACCACTGGGCATAA
1 TTTGTAAGACCTCCGGGCATGA
8002026 TTT
1 TTT
8002029 CAATTTACGG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
22 21 0.49
23 22 0.51
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (22 bp):
TTTGTAAGACCTCCGGGCATGA
Found at i:8002014 original size:22 final size:22
Alignment explanation
Indices: 8001963--8002029 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
8001953 GTCAATTTTG
*
8001963 TAAGACCTCCGGGCATGATTCTG
1 TAAGACCTCCGGGCATGATT-TC
8001986 TAAGACCTCCGGGCATGATTTC
1 TAAGACCTCCGGGCATGATTTC
* * *
8002008 TAAGACCACTGGGCATAATTTC
1 TAAGACCTCCGGGCATGATTTC
8002030 AATTTACGGT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
22 20 0.50
23 20 0.50
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (22 bp):
TAAGACCTCCGGGCATGATTTC
Found at i:8002115 original size:23 final size:23
Alignment explanation
Indices: 8002089--8002147 Score: 93
Period size: 23 Copynumber: 2.6 Consensus size: 23
8002079 ATCCCAGTCA
8002089 ATTCTGTAAGACCTCCGGGCATG
1 ATTCTGTAAGACCTCCGGGCATG
*
8002112 ATTCTGTATGACCTCCGGGCATG
1 ATTCTGTAAGACCTCCGGGCATG
*
8002135 ATT-TCTAAGACCT
1 ATTCTGTAAGACCT
8002148 TCAGGCATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 8 0.24
23 25 0.76
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (23 bp):
ATTCTGTAAGACCTCCGGGCATG
Found at i:8002154 original size:22 final size:22
Alignment explanation
Indices: 8002095--8002161 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
8002085 GTCAATTCTG
*
8002095 TAAGACCTCCGGGCATGATTCTG
1 TAAGACCTCCGGGCATGATT-TC
*
8002118 TATGACCTCCGGGCATGATTTC
1 TAAGACCTCCGGGCATGATTTC
* * *
8002140 TAAGACCTTCAGGCATAATTTC
1 TAAGACCTCCGGGCATGATTTC
8002162 AATTCGTGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
22 19 0.50
23 19 0.50
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (22 bp):
TAAGACCTCCGGGCATGATTTC
Found at i:8002279 original size:23 final size:22
Alignment explanation
Indices: 8002240--8002302 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
8002230 GACTTCCAAG
* *
8002240 CATGATTTCTAAAACCTTCGGA
1 CATGATTTTTAAGACCTTCGGA
* *
8002262 CATGATTTTGTAAGACCTCCGGG
1 CATGATTTT-TAAGACCTTCGGA
8002285 CATGATTTTTAAGACCTT
1 CATGATTTTTAAGACCTT
8002303 TGGGCGTAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
22 16 0.46
23 19 0.54
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (22 bp):
CATGATTTTTAAGACCTTCGGA
Found at i:8002307 original size:22 final size:22
Alignment explanation
Indices: 8002239--8002307 Score: 84
Period size: 22 Copynumber: 3.1 Consensus size: 22
8002229 AGACTTCCAA
* *
8002239 GCATGATTTCTAAAACCTTCGG
1 GCATGATTTTTAAGACCTTCGG
* *
8002261 ACATGATTTTGTAAGACCTCCGG
1 GCATGATTTT-TAAGACCTTCGG
*
8002284 GCATGATTTTTAAGACCTTTGG
1 GCATGATTTTTAAGACCTTCGG
8002306 GC
1 GC
8002308 GTAATTTCAA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
22 20 0.51
23 19 0.49
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (22 bp):
GCATGATTTTTAAGACCTTCGG
Found at i:8002407 original size:22 final size:22
Alignment explanation
Indices: 8002382--8002424 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8002372 GTCAATTCTG
*
8002382 TAAGACCTCCGAGCATGATTTC
1 TAAGACCTCCGAGCATAATTTC
* *
8002404 TAAGACTTCCGGGCATAATTT
1 TAAGACCTCCGAGCATAATTT
8002425 TGATTCGCGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (22 bp):
TAAGACCTCCGAGCATAATTTC
Found at i:8002467 original size:110 final size:110
Alignment explanation
Indices: 8002270--8002481 Score: 300
Period size: 110 Copynumber: 1.9 Consensus size: 110
8002260 GACATGATTT
* * * * *
8002270 TGTAAGACCTCCGGGCATGATTTTTAAGACCTTTGGGCGTAATTTCAATTCGCGGTGTTATCTCG
1 TGTAAGACCTCCGAGCATGATTTCTAAGACCTTCGGGCATAATTTCAATTCGCGATGTTATCTCG
* *
8002335 ATCGATTCTTTATTTTTCGACTTACGGTATTATCCCAGTCAATTC
66 ATCGATTCATTATTTTTCGACTTACGGTATCATCCCAGTCAATTC
**
8002380 TGTAAGACCTCCGAGCATGATTTCTAAGA-CTTCCGGGCATAATTTTGATTCGCGATGTTATCTC
1 TGTAAGACCTCCGAGCATGATTTCTAAGACCTT-CGGGCATAATTTCAATTCGCGATGTTATCTC
* * *
8002444 GATCGATTCATTATTTTTTGACTTGCGGTGTCATCCCA
65 GATCGATTCATTATTTTTCGACTTACGGTATCATCCCA
8002482 ATCGTTTTGT
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
109 3 0.03
110 86 0.97
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.38
Consensus pattern (110 bp):
TGTAAGACCTCCGAGCATGATTTCTAAGACCTTCGGGCATAATTTCAATTCGCGATGTTATCTCG
ATCGATTCATTATTTTTCGACTTACGGTATCATCCCAGTCAATTC
Found at i:8004256 original size:31 final size:30
Alignment explanation
Indices: 8004218--8004351 Score: 169
Period size: 31 Copynumber: 4.4 Consensus size: 30
8004208 CCCTAAACTT
*
8004218 AAACCCCTAAAATCCAAAATCCCTTAAATCC
1 AAACCCCTAAAATCCAAAAT-CCTAAAATCC
8004249 AAACCCCTAAAATCCAAAATCCTAAAATCC
1 AAACCCCTAAAATCCAAAATCCTAAAATCC
* * **
8004279 AAAATCCCTTAAATCCAAACCCCTAAAATCC
1 -AAACCCCTAAAATCCAAAATCCTAAAATCC
**
8004310 AAAATCCTAAAATCCAAAATCCTTAAAATCC
1 AAACCCCTAAAATCCAAAATCC-TAAAATCC
*
8004341 AAACCCTTAAA
1 AAACCCCTAAA
8004352 TCAAAACCCC
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
30 26 0.30
31 62 0.70
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (30 bp):
AAACCCCTAAAATCCAAAATCCTAAAATCC
Found at i:8004261 original size:15 final size:15
Alignment explanation
Indices: 8004218--8004361 Score: 146
Period size: 15 Copynumber: 9.5 Consensus size: 15
8004208 CCCTAAACTT
8004218 AAACCCCTAAAATCC
1 AAACCCCTAAAATCC
* *
8004233 AAAATCCCTTAAATCC
1 -AAACCCCTAAAATCC
8004249 AAACCCCTAAAATCC
1 AAACCCCTAAAATCC
**
8004264 AAAATCCTAAAATCC
1 AAACCCCTAAAATCC
* *
8004279 AAAATCCCTTAAATCC
1 -AAACCCCTAAAATCC
8004295 AAACCCCTAAAATCC
1 AAACCCCTAAAATCC
**
8004310 AAAATCCTAAAATCC
1 AAACCCCTAAAATCC
* *
8004325 AAAATCCTTAAAATCC
1 -AAACCCCTAAAATCC
* *
8004341 AAA-CCCTTAAATCA
1 AAACCCCTAAAATCC
8004355 AAACCCC
1 AAACCCC
8004362 AAACTTTAAA
Statistics
Matches: 106, Mismatches: 19, Indels: 7
0.80 0.14 0.05
Matches are distributed among these distances:
14 11 0.10
15 58 0.55
16 37 0.35
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (15 bp):
AAACCCCTAAAATCC
Found at i:8004283 original size:46 final size:46
Alignment explanation
Indices: 8004223--8004351 Score: 233
Period size: 46 Copynumber: 2.8 Consensus size: 46
8004213 AACTTAAACC
8004223 CCTAAAATCCAAAATCCCTTAAATCCAAACCCCTAAAATCCAAAAT
1 CCTAAAATCCAAAATCCCTTAAATCCAAACCCCTAAAATCCAAAAT
8004269 CCTAAAATCCAAAATCCCTTAAATCCAAACCCCTAAAATCCAAAAT
1 CCTAAAATCCAAAATCCCTTAAATCCAAACCCCTAAAATCCAAAAT
*
8004315 CCTAAAATCCAAAAT-CCTTAAAATCCAAACCCTTAAA
1 CCTAAAATCCAAAATCCCTT-AAATCCAAACCCCTAAA
8004352 TCAAAACCCC
Statistics
Matches: 81, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
45 4 0.05
46 77 0.95
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (46 bp):
CCTAAAATCCAAAATCCCTTAAATCCAAACCCCTAAAATCCAAAAT
Found at i:8004433 original size:30 final size:30
Alignment explanation
Indices: 8004360--8004422 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
8004350 AATCAAAACC
* *
8004360 CCAAACTTTAAAATGCAAACCCTAAAATTT
1 CCAAACTCTAAAATGCAAACCCTAAAACTT
*
8004390 CCAAACTCTAAAAT-CAAAACCCTAAACCTT
1 CCAAACTCTAAAATGC-AAACCCTAAAACTT
8004420 CCA
1 CCA
8004423 TATCATAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 1 0.03
30 28 0.97
ACGTcount: A:0.46, C:0.30, G:0.02, T:0.22
Consensus pattern (30 bp):
CCAAACTCTAAAATGCAAACCCTAAAACTT
Found at i:8006633 original size:17 final size:19
Alignment explanation
Indices: 8006598--8006636 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
8006588 TTTCCACACT
8006598 ATTATACATCTTTAATACA
1 ATTATACATCTTTAATACA
*
8006617 ATTATAC-T-TTTAGTACA
1 ATTATACATCTTTAATACA
8006634 ATT
1 ATT
8006637 GAATAAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 11 0.58
18 1 0.05
19 7 0.37
ACGTcount: A:0.38, C:0.13, G:0.03, T:0.46
Consensus pattern (19 bp):
ATTATACATCTTTAATACA
Found at i:8009118 original size:18 final size:18
Alignment explanation
Indices: 8009095--8009141 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
8009085 TGGCTTTCAT
8009095 GAAAATTGAACA-TCAATC
1 GAAAATTGAACACT-AATC
8009113 GAAAATTGAACACTAATC
1 GAAAATTGAACACTAATC
*
8009131 GAAATTTGAAC
1 GAAAATTGAAC
8009142 CAATAATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 26 0.96
19 1 0.04
ACGTcount: A:0.49, C:0.15, G:0.13, T:0.23
Consensus pattern (18 bp):
GAAAATTGAACACTAATC
Found at i:8010174 original size:20 final size:21
Alignment explanation
Indices: 8010149--8010187 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
8010139 CTACCAACAT
8010149 TAATTTTTCTTT-AGTTTTCA
1 TAATTTTTCTTTAAGTTTTCA
8010169 TAATTTTTCTTTAAGTTTT
1 TAATTTTTCTTTAAGTTTT
8010188 GCAACTTTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.21, C:0.08, G:0.05, T:0.67
Consensus pattern (21 bp):
TAATTTTTCTTTAAGTTTTCA
Found at i:8018739 original size:70 final size:70
Alignment explanation
Indices: 8018641--8018828 Score: 182
Period size: 70 Copynumber: 2.7 Consensus size: 70
8018631 ACAACATTGT
* *
8018641 AAGTCAGAAATAACA-AAAG-ACTGAGACAATATCACAAGTAAAAAATAACGAACAACCAAGATA
1 AAGTCAGAAATAA-AGAATGAAC-GAGACAATATCACAAGTAAAAAATAACGAACAACCAAGACA
8018704 ATACCAC
64 ATACCAC
* * * * ** * ** * *
8018711 AAGTCAGAAATAATGAATGAACGGGACAATACCATAAGCCAAAAATAATGAATGATCAGGACAAT
1 AAGTCAGAAATAAAGAATGAACGAGACAATATCACAAGTAAAAAATAACGAACAACCAAGACAAT
8018776 ACCAC
66 ACCAC
* * * * *
8018781 AAGTCAGAAATAAAGGATGATCGAGACAACATCACAAGTTAGAAATAA
1 AAGTCAGAAATAAAGAATGAACGAGACAATATCACAAGTAAAAAATAA
8018829 AGGATGACCT
Statistics
Matches: 93, Mismatches: 23, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
70 91 0.98
71 2 0.02
ACGTcount: A:0.53, C:0.16, G:0.15, T:0.15
Consensus pattern (70 bp):
AAGTCAGAAATAAAGAATGAACGAGACAATATCACAAGTAAAAAATAACGAACAACCAAGACAAT
ACCAC
Found at i:8018742 original size:35 final size:35
Alignment explanation
Indices: 8018703--8019002 Score: 208
Period size: 35 Copynumber: 8.6 Consensus size: 35
8018693 CAACCAAGAT
* *
8018703 AATACCACAAGTCAGAAATAATGAATGAACGGGAC
1 AATACCACAAGTCAGAAATAATGAATGATCAGGAC
* * *
8018738 AATACCATAAGCCAAAAATAATGAATGATCAGGAC
1 AATACCACAAGTCAGAAATAATGAATGATCAGGAC
* *
8018773 AATACCACAAGTCAGAAATAAAGGATGATC-GAGAC
1 AATACCACAAGTCAGAAATAATGAATGATCAG-GAC
* * * * * * **
8018808 AACATCACAAGTTAGAAATAAAGGATGACCTTGAC
1 AATACCACAAGTCAGAAATAATGAATGATCAGGAC
* * * * * * * *
8018843 AACATCAAAAGTCAAAAATAGTGGATGACCAAGAC
1 AATACCACAAGTCAGAAATAATGAATGATCAGGAC
* * * * * * *
8018878 AACACCACAAGTTAGAAATAACGGACGATCAAGAG
1 AATACCACAAGTCAGAAATAATGAATGATCAGGAC
* * *
8018913 AATACCACAAGTCAAAAATAATGAACGATCAGGAA
1 AATACCACAAGTCAGAAATAATGAATGATCAGGAC
* * * * * **
8018948 AACATCATAAGTCATAAATAAAGAATGATTGGGAC
1 AATACCACAAGTCAGAAATAATGAATGATCAGGAC
8018983 AATACCACAAGGT-AGAAATA
1 AATACCACAA-GTCAGAAATA
8019003 GCAAACAACC
Statistics
Matches: 211, Mismatches: 51, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
34 1 0.00
35 208 0.99
36 2 0.01
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.16
Consensus pattern (35 bp):
AATACCACAAGTCAGAAATAATGAATGATCAGGAC
Found at i:8018825 original size:105 final size:104
Alignment explanation
Indices: 8018665--8019002 Score: 298
Period size: 105 Copynumber: 3.2 Consensus size: 104
8018655 AAAAGACTGA
* * * * * * * *
8018665 GACAATATCACAAGTAAAAAATAACGAACAACCAAGATAATACCACAAGTCAGAAATAATGAATG
1 GACAATACCACAAGT-AGAAATAAAGGACGATCAAGACAACACCACAAGTCAGAAATAATGAATG
* * * *
8018730 AACGGGACAATACCATAAGCCAAAAATAATGAATGATCAG
65 AACAGGACAACATCATAAGTCAAAAATAATGAATGATCAG
* * * * * *
8018770 GACAATACCACAAGTCAGAAATAAAGGATGATCGAGACAACATCACAAGTTAGAAATAAAGGATG
1 GACAATACCACAAGT-AGAAATAAAGGACGATCAAGACAACACCACAAGTCAGAAATAATGAATG
* ** * * * * *
8018835 ACCTTGACAACATCAAAAGTCAAAAATAGTGGATGACCAA
65 AACAGGACAACATCATAAGTCAAAAATAATGAATGATCAG
* * * * * *
8018875 GACAACACCACAAGTTAGAAATAACGGACGATCAAGAGAATACCACAAGTCAAAAATAATGAACG
1 GACAATACCACAAG-TAGAAATAAAGGACGATCAAGACAACACCACAAGTCAGAAATAATGAATG
* * * * **
8018940 ATCAGGAAAACATCATAAGTCATAAATAAAGAATGATTGG
65 AACAGGACAACATCATAAGTCAAAAATAATGAATGATCAG
8018980 GACAATACCACAAGGTAGAAATA
1 GACAATACCACAA-GTAGAAATA
8019003 GCAAACAACC
Statistics
Matches: 179, Mismatches: 52, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
105 177 0.99
106 2 0.01
ACGTcount: A:0.51, C:0.17, G:0.17, T:0.16
Consensus pattern (104 bp):
GACAATACCACAAGTAGAAATAAAGGACGATCAAGACAACACCACAAGTCAGAAATAATGAATGA
ACAGGACAACATCATAAGTCAAAAATAATGAATGATCAG
Found at i:8019150 original size:34 final size:32
Alignment explanation
Indices: 8019091--8019157 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 32
8019081 TCAGGGTAAC
* *
8019091 ACCACAAGTTAAAAATAATGAATGACCAAACAAT
1 ACCACAAGTAAAAAATAAAGAATGA-CAAA-AAT
8019125 ACCACAAGTAAAAAATAAA-AGATGACAAAAAT
1 ACCACAAGTAAAAAATAAAGA-ATGACAAAAAT
8019157 A
1 A
8019158 AAGGACAACC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 4 0.13
33 5 0.17
34 21 0.70
ACGTcount: A:0.61, C:0.15, G:0.09, T:0.15
Consensus pattern (32 bp):
ACCACAAGTAAAAAATAAAGAATGACAAAAAT
Found at i:8019190 original size:35 final size:36
Alignment explanation
Indices: 8019150--8019301 Score: 143
Period size: 35 Copynumber: 4.3 Consensus size: 36
8019140 TAAAAGATGA
** *
8019150 CAAAAATAAAGGACAACCGA-GACAACACCAAAAGT
1 CAAAAATAAAGGATGACCGAGGACAACACCACAAGT
* * * *
8019185 CAAAAATAATGAATGACC-AGGACAATACTACAAGT
1 CAAAAATAAAGGATGACCGAGGACAACACCACAAGT
* * *
8019220 CAAAAATAAAAGATGA-CTAGGACAACACCATAAGT
1 CAAAAATAAAGGATGACCGAGGACAACACCACAAGT
*
8019255 CAAAAATAAAAGG-TGACCGA-GACAACACCGCAAGT
1 CAAAAAT-AAAGGATGACCGAGGACAACACCACAAGT
*
8019290 TAGAAAATAAAG
1 CA-AAAATAAAG
8019302 TAACCAAGGA
Statistics
Matches: 94, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
34 2 0.02
35 81 0.86
36 11 0.12
ACGTcount: A:0.54, C:0.18, G:0.16, T:0.12
Consensus pattern (36 bp):
CAAAAATAAAGGATGACCGAGGACAACACCACAAGT
Found at i:8020264 original size:7 final size:6
Alignment explanation
Indices: 8020235--8020290 Score: 62
Period size: 6 Copynumber: 9.2 Consensus size: 6
8020225 ATTCAAATCC
*
8020235 TCTTTT T-TTTT TCTTTT TATTTT TGCTTTT TGCTTTT TCTTTCT T-TTTT
1 TCTTTT TCTTTT TCTTTT TCTTTT T-CTTTT T-CTTTT TCTTT-T TCTTTT
8020284 TCTTTT T
1 TCTTTT T
8020291 TTTACTTATA
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
5 7 0.16
6 23 0.52
7 14 0.32
ACGTcount: A:0.02, C:0.12, G:0.04, T:0.82
Consensus pattern (6 bp):
TCTTTT
Found at i:8020276 original size:26 final size:25
Alignment explanation
Indices: 8020235--8020290 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
8020225 ATTCAAATCC
8020235 TCTTTTT--TTTTTCTTT-TTATTTT
1 TCTTTTTGCTTTTTCTTTCTT-TTTT
8020258 TGCTTTTTGCTTTTTCTTTCTTTTTT
1 T-CTTTTTGCTTTTTCTTTCTTTTTT
8020284 TCTTTTT
1 TCTTTTT
8020291 TTTACTTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
23 1 0.03
24 6 0.21
25 6 0.21
26 14 0.48
27 2 0.07
ACGTcount: A:0.02, C:0.12, G:0.04, T:0.82
Consensus pattern (25 bp):
TCTTTTTGCTTTTTCTTTCTTTTTT
Found at i:8020291 original size:26 final size:26
Alignment explanation
Indices: 8020242--8020290 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
8020232 TCCTCTTTTT
8020242 TTTTTCTTTTTATTTTTGCTTTTTGC
1 TTTTTCTTTTTATTTTTGCTTTTTGC
8020268 TTTTTCTTTCTT-TTTTT-CTTTTT
1 TTTTTCTTT-TTATTTTTGCTTTTT
8020291 TTTACTTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 6 0.27
26 14 0.64
27 2 0.09
ACGTcount: A:0.02, C:0.12, G:0.04, T:0.82
Consensus pattern (26 bp):
TTTTTCTTTTTATTTTTGCTTTTTGC
Found at i:8022127 original size:31 final size:31
Alignment explanation
Indices: 8022092--8022150 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
8022082 AAGAAGTCAA
8022092 ACTTTATGGGCTCATAATATTCTATGGCCCT
1 ACTTTATGGGCTCATAATATTCTATGGCCCT
* * * *
8022123 ACTTTATGGGTTTATAATCTTCTGTGGC
1 ACTTTATGGGCTCATAATATTCTATGGC
8022151 TCTATTAGTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.42
Consensus pattern (31 bp):
ACTTTATGGGCTCATAATATTCTATGGCCCT
Found at i:8027304 original size:39 final size:39
Alignment explanation
Indices: 8027237--8027314 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
8027227 TCACATGTAC
*
8027237 TTGGGGTTGACTAGCAAATGGTAAAGCAAAAGTGAAAGG
1 TTGGGGTTGACTAACAAATGGTAAAGCAAAAGTGAAAGG
**
8027276 TTGGGGTTGACTAACAGAA-GGTCTAGCAAAAGTGAAAGG
1 TTGGGGTTGACTAACA-AATGGTAAAGCAAAAGTGAAAGG
8027315 CTATGTGGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
39 33 0.94
40 2 0.06
ACGTcount: A:0.37, C:0.09, G:0.33, T:0.21
Consensus pattern (39 bp):
TTGGGGTTGACTAACAAATGGTAAAGCAAAAGTGAAAGG
Found at i:8032882 original size:17 final size:17
Alignment explanation
Indices: 8032851--8032884 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8032841 TCATATACTT
**
8032851 GAAAAGAGGGGAAAAAA
1 GAAAAGAGGCAAAAAAA
8032868 GAAAAGAGGCAAAAAAA
1 GAAAAGAGGCAAAAAAA
8032885 AGGCTTACTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.68, C:0.03, G:0.29, T:0.00
Consensus pattern (17 bp):
GAAAAGAGGCAAAAAAA
Found at i:8032883 original size:16 final size:17
Alignment explanation
Indices: 8032851--8032883 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8032841 TCATATACTT
*
8032851 GAAAAGAGGGGAAAAAA
1 GAAAAGAGGGCAAAAAA
8032868 GAAAAGA-GGCAAAAAA
1 GAAAAGAGGGCAAAAAA
8032884 AAGGCTTACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.67, C:0.03, G:0.30, T:0.00
Consensus pattern (17 bp):
GAAAAGAGGGCAAAAAA
Found at i:8041285 original size:11 final size:11
Alignment explanation
Indices: 8041269--8041305 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
8041259 TTATATGTTA
8041269 GTTTATATAGT
1 GTTTATATAGT
8041280 GTTTAT-TA--
1 GTTTATATAGT
8041288 GTTTATATAGT
1 GTTTATATAGT
8041299 GTTTATA
1 GTTTATA
8041306 GCTACAATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
8 6 0.26
9 2 0.09
10 2 0.09
11 13 0.57
ACGTcount: A:0.27, C:0.00, G:0.16, T:0.57
Consensus pattern (11 bp):
GTTTATATAGT
Found at i:8041290 original size:19 final size:19
Alignment explanation
Indices: 8041266--8041304 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
8041256 ATGTTATATG
8041266 TTAGTTTATATAGTGTTTA
1 TTAGTTTATATAGTGTTTA
8041285 TTAGTTTATATAGTGTTTA
1 TTAGTTTATATAGTGTTTA
8041304 T
1 T
8041305 AGCTACAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (19 bp):
TTAGTTTATATAGTGTTTA
Found at i:8043019 original size:21 final size:21
Alignment explanation
Indices: 8042973--8043020 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
8042963 AAATTGCTTG
* *
8042973 AAAACTTAAATTAAACTTGCA
1 AAAATTTAAATTAAACTTGAA
*
8042994 AAAATTTAAATT-ACCTTGAA
1 AAAATTTAAATTAAACTTGAA
8043014 AGAAATT
1 A-AAATT
8043021 GTATTAAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.31
Consensus pattern (21 bp):
AAAATTTAAATTAAACTTGAA
Found at i:8048191 original size:19 final size:18
Alignment explanation
Indices: 8048162--8048206 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 18
8048152 ATATCAATCT
*
8048162 CAATGTCAAGCAATATAC
1 CAATATCAAGCAATATAC
8048180 CAATCATCAAGCAATATAC
1 CAAT-ATCAAGCAATATAC
8048199 CAATATCA
1 CAATATCA
8048207 TAACCCATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.47, C:0.24, G:0.07, T:0.22
Consensus pattern (18 bp):
CAATATCAAGCAATATAC
Found at i:8057194 original size:41 final size:41
Alignment explanation
Indices: 8057137--8057221 Score: 152
Period size: 41 Copynumber: 2.1 Consensus size: 41
8057127 GGCATGTAGG
*
8057137 ATAGAAATTGTGATTCATTTTCTCACACATTCAGACATGGC
1 ATAGAAATTATGATTCATTTTCTCACACATTCAGACATGGC
*
8057178 ATAGAAATTATGATTCATTTTCTCCCACATTCAGACATGGC
1 ATAGAAATTATGATTCATTTTCTCACACATTCAGACATGGC
8057219 ATA
1 ATA
8057222 TTCATATTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (41 bp):
ATAGAAATTATGATTCATTTTCTCACACATTCAGACATGGC
Found at i:8058743 original size:27 final size:28
Alignment explanation
Indices: 8058695--8058750 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
8058685 AGTATAAAAA
* *
8058695 TAAATTTTAGAAAATATTATTTA-ATTT
1 TAAATTATAGAAAATATAATTTATATTT
* *
8058722 TAAATTATAGATATTATAATTTATATTT
1 TAAATTATAGAAAATATAATTTATATTT
8058750 T
1 T
8058751 TTTATAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (28 bp):
TAAATTATAGAAAATATAATTTATATTT
Done.