Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 56 of 129
Found at i:8060405 original size:22 final size:22
Alignment explanation
Indices: 8060377--8060418 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
8060367 ATGTTAGAGA
8060377 CTTAAATGATTATTGAATTTAC
1 CTTAAATGATTATTGAATTTAC
8060399 CTTAAATGATTATTGAATTT
1 CTTAAATGATTATTGAATTT
8060419 TAATTTGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.07, G:0.10, T:0.48
Consensus pattern (22 bp):
CTTAAATGATTATTGAATTTAC
Found at i:8061391 original size:19 final size:18
Alignment explanation
Indices: 8061349--8061387 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
8061339 ATAATTTGCA
8061349 TTGATTTTTCAATTTCCT
1 TTGATTTTTCAATTTCCT
8061367 TTGATTTTTCAATTTCCT
1 TTGATTTTTCAATTTCCT
8061385 TTG
1 TTG
8061388 GATTATTCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.08, T:0.62
Consensus pattern (18 bp):
TTGATTTTTCAATTTCCT
Found at i:8062573 original size:73 final size:73
Alignment explanation
Indices: 8062485--8062630 Score: 224
Period size: 73 Copynumber: 2.0 Consensus size: 73
8062475 AATGCAAAAG
* *
8062485 GTATTCAAAGTAAAAAAATA-GAA-CTTAACAAAAAAAAATGACACTAAGCAATCAACCTATCCC
1 GTATCCAAAGTAAAAAAA-ACAAAGCTTAAC-AAAAAAAATGACACTAAGCAATCAACCTATCCC
8062548 ATTACGTATA
64 ATTACGTATA
*
8062558 GTATCCAAAGTAAAAAAAACAAAGCTTAACAAAAAAAATGGCACTAAGCAATCAACCTATCCCAT
1 GTATCCAAAGTAAAAAAAACAAAGCTTAACAAAAAAAATGACACTAAGCAATCAACCTATCCCAT
*
8062623 TATGTATA
66 TACGTATA
8062631 ACTTACTCAA
Statistics
Matches: 67, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
72 1 0.01
73 60 0.90
74 6 0.09
ACGTcount: A:0.51, C:0.18, G:0.09, T:0.21
Consensus pattern (73 bp):
GTATCCAAAGTAAAAAAAACAAAGCTTAACAAAAAAAATGACACTAAGCAATCAACCTATCCCAT
TACGTATA
Found at i:8064269 original size:19 final size:19
Alignment explanation
Indices: 8064245--8064286 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
8064235 CTCTATGCTC
8064245 TCTTAAAAGACTGTTTATG
1 TCTTAAAAGACTGTTTATG
*
8064264 TCTTAAAAGATTGTTTATG
1 TCTTAAAAGACTGTTTATG
8064283 TCTT
1 TCTT
8064287 TTAATGGCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.48
Consensus pattern (19 bp):
TCTTAAAAGACTGTTTATG
Found at i:8064945 original size:22 final size:22
Alignment explanation
Indices: 8064920--8064996 Score: 57
Period size: 22 Copynumber: 3.2 Consensus size: 22
8064910 GGATCTTTCG
8064920 AATTTAACATTCAAATTATTCA
1 AATTTAACATTCAAATTATTCA
*
8064942 AATTTCGATTTTAGATTCAAATTATT-A
1 AATTT--A----ACATTCAAATTATTCA
* *
8064969 ATAATTAATATTCAAATTATTCA
1 A-ATTTAACATTCAAATTATTCA
8064992 AATTT
1 AATTT
8064997 CTATTATTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 16
0.68 0.06 0.25
Matches are distributed among these distances:
22 21 0.49
23 2 0.05
24 1 0.02
26 1 0.02
27 2 0.05
28 16 0.37
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.45
Consensus pattern (22 bp):
AATTTAACATTCAAATTATTCA
Found at i:8064982 original size:50 final size:51
Alignment explanation
Indices: 8064923--8065022 Score: 148
Period size: 50 Copynumber: 1.9 Consensus size: 51
8064913 TCTTTCGAAT
8064923 TTAACATTCAAATTATTCAAATTTC-GATTTTAGATTCAAATTATTAATAA
1 TTAACATTCAAATTATTCAAATTTCTGATTTTAGATTCAAATTATTAATAA
* * *
8064973 TTAATATTCAAATTATTCAAATTTCTATTATTTTATATTCAAATTATTAA
1 TTAACATTCAAATTATTCAAATTTC--TGATTTTAGATTCAAATTATTAA
8065023 ATTTTAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
50 24 0.55
53 20 0.45
ACGTcount: A:0.41, C:0.09, G:0.02, T:0.48
Consensus pattern (51 bp):
TTAACATTCAAATTATTCAAATTTCTGATTTTAGATTCAAATTATTAATAA
Found at i:8064994 original size:31 final size:30
Alignment explanation
Indices: 8064956--8065029 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 30
8064946 TCGATTTTAG
8064956 ATTCAAATTATTAATAATTAATATTCAAATT
1 ATTCAAATT-TTAATAATTAATATTCAAATT
* * *
8064987 ATTCAAATTTCTATTATTTTATATTCAAATT
1 ATTCAAATTT-TAATAATTAATATTCAAATT
8065018 ATT-AAATTTTAA
1 ATTCAAATTTTAA
8065030 AATCAAAGAA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
29 2 0.05
30 7 0.18
31 29 0.76
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (30 bp):
ATTCAAATTTTAATAATTAATATTCAAATT
Found at i:8069677 original size:13 final size:13
Alignment explanation
Indices: 8069659--8069683 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8069649 ATACATTGTC
8069659 TTAAAATTTAAGT
1 TTAAAATTTAAGT
8069672 TTAAAATTTAAG
1 TTAAAATTTAAG
8069684 CTGCTTCAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
TTAAAATTTAAGT
Found at i:8070567 original size:21 final size:20
Alignment explanation
Indices: 8070520--8070569 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
8070510 CGAATGCTTT
* *
8070520 ATGGTTAAACTTGGTAAAAA
1 ATGGTCAAACTTAGTAAAAA
**
8070540 AAAGTCAAACTTAGTAAAAA
1 ATGGTCAAACTTAGTAAAAA
8070560 ATTGGTCAAA
1 A-TGGTCAAA
8070570 TTGGATCGAA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.50, C:0.08, G:0.16, T:0.26
Consensus pattern (20 bp):
ATGGTCAAACTTAGTAAAAA
Found at i:8070971 original size:145 final size:143
Alignment explanation
Indices: 8070758--8071234 Score: 415
Period size: 142 Copynumber: 3.3 Consensus size: 143
8070748 CATGAAGACT
* * * * * * *
8070758 TCCAAATCATGTTTTAACATTAATTTATGATTTTTGATGCATTAAAAGCCTTAATCACACATTGA
1 TCCAAATCATGTTTTGATATTATTTTATGATTTTTGATGCATTAAAAACCTTGATCACACCTTAA
* ** * *
8070823 AAGGTATGAAATTATCAAAATGCCTTTTAGTGATATTTTTGTAATTTGACTTTATTGAGGTTAGT
66 AAGGTATGAAATTATCAAAATACCTTTTAG-GATATTTTTGTAATTTGACTTTATCAAGGTCAAT
*
8070888 TTTTAAGGGAAAAGG
130 TTTTAA-GGAAAAGC
* * * * *
8070903 TCCATATCATATTTTGATATTATTTTATGAATTTTGGTGCATTAAAAACCTTGATCGCACCTTAA
1 TCCAAATCATGTTTTGATATTATTTTATGATTTTTGATGCATTAAAAACCTTGATCACACCTTAA
* * * ** * *
8070968 AAGGTATGAAATTATGAAAATACCTTTTAGGGTATCTTCCTAATTTCACTTTCTCAAGGTCAATT
66 AAGGTATGAAATTATCAAAATACCTTTTAGGATATTTTTGTAATTTGACTTTATCAAGGTCAATT
* *
8071033 TTTCATGAAAAGC
131 TTTAAGGAAAAGC
* * * * *
8071046 T-CAAGATCATGTTTTGATATTATTTTATGATTTTTAATACATT-AAAACCTTGATTATATCTTA
1 TCCAA-ATCATGTTTTGATATTATTTTATGATTTTTGATGCATTAAAAACCTTGATCACACCTTA
** * * * **
8071109 AAAAATGTAAAATTA-CTAAAATACCTTTTAGGGATATTTTTGTAATTTGACCTTCCCAAGGTC-
65 AAAGGTATGAAATTATC-AAAATACCTTTTA-GGATATTTTTGTAATTTGACTTTATCAAGGTCA
* * *
8071172 ATTTATCATGAAAAGC
128 ATTTTTAAGGAAAAGC
** ** * * * *
8071188 TTTAGGTTATG-ATTAAGTATTATTTTATGATTTTTGGTGCATTAAAA
1 TCCAAATCATGTTTTGA-TATTATTTTATGATTTTTGATGCATTAAAA
8071235 TCATGAAAAC
Statistics
Matches: 267, Mismatches: 59, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
141 3 0.01
142 85 0.32
143 69 0.26
144 29 0.11
145 81 0.30
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (143 bp):
TCCAAATCATGTTTTGATATTATTTTATGATTTTTGATGCATTAAAAACCTTGATCACACCTTAA
AAGGTATGAAATTATCAAAATACCTTTTAGGATATTTTTGTAATTTGACTTTATCAAGGTCAATT
TTTAAGGAAAAGC
Found at i:8071169 original size:143 final size:144
Alignment explanation
Indices: 8070684--8071188 Score: 387
Period size: 145 Copynumber: 3.5 Consensus size: 144
8070674 TTTGAGAGGC
* * * * * * * **
8070684 ATAAAATTACCAAAATACCCTTTA-AGAGTATTTTCGTAATTTAACCTTCT-AGAAGTTGATTTT
1 ATAAAATTATCAAAATACCTTTTAGGGA-TATTTTTGTAATTTGACTTTCTCA-AGGTCAATTTT
* * * * * * * * *
8070747 TCATGAAGA-CTTCCAA-ATCATGTTTTAACATTAATTTATGATTTTTGATGCATTAAAAGCCTT
64 TCATGAAAAGC-T-CAAGATCATATTTTGATATTATTTTATGAATTTTAATACATTAAAAACCTT
* * * **
8070810 AATCACACATTGAAAGGT
127 GATCACACCTTAAAAAAT
* * * * ** * * *
8070828 ATGAAATTATCAAAATGCCTTTTAGTGATATTTTTGTAATTTGACTTTATTGAGGTTAGTTTTTA
1 ATAAAATTATCAAAATACCTTTTAGGGATATTTTTGTAATTTGACTTTCTCAAGGTCAATTTTTC
* * * * ** *
8070893 AGGGAAAAGGTCCATATCATATTTTGATATTATTTTATGAATTTTGGTGCATTAAAAACCTTGAT
66 A-TGAAAAGCTCAAGATCATATTTTGATATTATTTTATGAATTTTAATACATTAAAAACCTTGAT
* **
8070958 CGCACCTTAAAAGGT
130 CACACCTTAAAAAAT
* * * ** *
8070973 ATGAAATTATGAAAATACCTTTTAGGG-TATCTTCCTAATTTCACTTTCTCAAGGTCAATTTTTC
1 ATAAAATTATCAAAATACCTTTTAGGGATATTTTTGTAATTTGACTTTCTCAAGGTCAATTTTTC
* * *
8071037 ATGAAAAGCTCAAGATCATGTTTTGATATTATTTTATGATTTTTAATACATT-AAAACCTTGATT
66 ATGAAAAGCTCAAGATCATATTTTGATATTATTTTATGAATTTTAATACATTAAAAACCTTGATC
* *
8071101 ATATCTTAAAAAAT
131 ACACCTTAAAAAAT
* * * *
8071115 GTAAAATTA-CTAAAATACCTTTTAGGGATATTTTTGTAATTTGACCTTCCCAAGGTC-ATTTAT
1 ATAAAATTATC-AAAATACCTTTTAGGGATATTTTTGTAATTTGACTTTCTCAAGGTCAATTTTT
8071178 CATGAAAAGCT
65 CATGAAAAGCT
8071189 TTAGGTTATG
Statistics
Matches: 287, Mismatches: 67, Indels: 16
0.78 0.18 0.04
Matches are distributed among these distances:
142 59 0.21
143 65 0.23
144 78 0.27
145 85 0.30
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40
Consensus pattern (144 bp):
ATAAAATTATCAAAATACCTTTTAGGGATATTTTTGTAATTTGACTTTCTCAAGGTCAATTTTTC
ATGAAAAGCTCAAGATCATATTTTGATATTATTTTATGAATTTTAATACATTAAAAACCTTGATC
ACACCTTAAAAAAT
Found at i:8073791 original size:6 final size:6
Alignment explanation
Indices: 8073782--8073853 Score: 51
Period size: 6 Copynumber: 11.8 Consensus size: 6
8073772 GACAAAAAGA
*
8073782 AAAAAT -AAAAT GAAATAAT AAAAAT AATAAAT --AAAT AACAAAT AATAAT
1 AAAAAT AAAAAT -AAA-AAT AAAAAT AA-AAAT AAAAAT AA-AAAT AAAAAT
* * *
8073831 AATAAT AACAAT AATAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAA
8073854 ATAATGATGA
Statistics
Matches: 55, Mismatches: 4, Indels: 14
0.75 0.05 0.19
Matches are distributed among these distances:
4 4 0.07
5 5 0.09
6 28 0.51
7 15 0.27
8 3 0.05
ACGTcount: A:0.74, C:0.03, G:0.01, T:0.22
Consensus pattern (6 bp):
AAAAAT
Found at i:8073810 original size:3 final size:3
Alignment explanation
Indices: 8073795--8073922 Score: 77
Period size: 3 Copynumber: 43.3 Consensus size: 3
8073785 AATAAAATGA
* * *
8073795 AAT AAT AAA AAT AAT AAAT AAAT AACA AAT AAT AAT AAT AAT AAC AAT
1 AAT AAT AAT AAT AAT -AAT -AAT AA-T AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
8073843 AAT AAT AA- AA- AAT AAT GAT GAT GAT GAT GAC AAT GA- AAT AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* **
8073887 AAT AAT AAT AGT AAT AAT GGT AAT AAT AAT -AT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
8073923 TGCTATATAA
Statistics
Matches: 101, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
2 9 0.09
3 83 0.82
4 9 0.09
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:8073922 original size:5 final size:5
Alignment explanation
Indices: 8073907--8073987 Score: 72
Period size: 5 Copynumber: 15.0 Consensus size: 5
8073897 GTAATAATGG
* *
8073907 TAATAA TAATA TAATA TGCTATA TAATA TAATA TATACTA TACTA TAATA
1 TAAT-A TAATA TAATA T--AATA TAATA TAATA TA-A-TA TAATA TAATA
* *
8073957 GTAAGA TAATA TAATA TCATA TAATA TAATA
1 -TAATA TAATA TAATA TAATA TAATA TAATA
8073988 AAAGCACACA
Statistics
Matches: 62, Mismatches: 8, Indels: 11
0.77 0.10 0.14
Matches are distributed among these distances:
5 45 0.73
6 9 0.15
7 8 0.13
ACGTcount: A:0.53, C:0.05, G:0.04, T:0.38
Consensus pattern (5 bp):
TAATA
Found at i:8073930 original size:12 final size:12
Alignment explanation
Indices: 8073915--8073953 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
8073905 GGTAATAATA
*
8073915 ATATAATATGCT
1 ATATAATATACT
*
8073927 ATATAATATAAT
1 ATATAATATACT
*
8073939 ATATACTATACT
1 ATATAATATACT
8073951 ATA
1 ATA
8073954 ATAGTAAGAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.41
Consensus pattern (12 bp):
ATATAATATACT
Found at i:8074431 original size:65 final size:65
Alignment explanation
Indices: 8074349--8074476 Score: 157
Period size: 65 Copynumber: 2.0 Consensus size: 65
8074339 GCGAGTTTGA
* ** * * * *
8074349 AAGCGACCAAGATCGAGTTGAGGTTAAAGATGAATGACTAGGATGATACCATGAGTCAGGAAATG
1 AAGCGACCAAGAGCGAGTCAAGGTAAAAAATGAATGACCAGGATGATACCATGAGTCAAGAAATG
* * * *
8074414 AAGCGATCAAGAGCGAGTCAAGGTAAAAAATGAATGACCGGGATGGTGCCATGAGTCAAGAAA
1 AAGCGACCAAGAGCGAGTCAAGGTAAAAAATGAATGACCAGGATGATACCATGAGTCAAGAAA
8074477 ATGATCTGGA
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
65 52 1.00
ACGTcount: A:0.40, C:0.13, G:0.30, T:0.17
Consensus pattern (65 bp):
AAGCGACCAAGAGCGAGTCAAGGTAAAAAATGAATGACCAGGATGATACCATGAGTCAAGAAATG
Found at i:8075181 original size:60 final size:60
Alignment explanation
Indices: 8075041--8075189 Score: 163
Period size: 60 Copynumber: 2.5 Consensus size: 60
8075031 CTGAGATCAG
** * * * * *
8075041 ATGAATGGGATGATACCGTGAGTTTGAAAGCAACCAAGATTGAGTTGAGATCGAAGATGA
1 ATGAATGGGATGATACCACGAGTCTAAAAGCAACCAAGATCGAGTTAAGATCAAAGATGA
* ** ** *
8075101 ATGACTGGGATGATGTCACGAGTCTAAAAGTGACCAAGATCGAGTTAAGGTCAAAGATGA
1 ATGAATGGGATGATACCACGAGTCTAAAAGCAACCAAGATCGAGTTAAGATCAAAGATGA
* *
8075161 ATGAATGGGATGAAACCACGAGTCAAAAA
1 ATGAATGGGATGATACCACGAGTCTAAAA
8075190 AATAAAGTTC
Statistics
Matches: 71, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
60 71 1.00
ACGTcount: A:0.39, C:0.12, G:0.28, T:0.21
Consensus pattern (60 bp):
ATGAATGGGATGATACCACGAGTCTAAAAGCAACCAAGATCGAGTTAAGATCAAAGATGA
Found at i:8075483 original size:86 final size:86
Alignment explanation
Indices: 8075350--8075640 Score: 255
Period size: 86 Copynumber: 3.4 Consensus size: 86
8075340 GCAAGCATGG
* * *** *
8075350 AAGATTCACAAGATTCCAAGTTTCACAAAGGTTCTAGATTTGCAAAGA-TCTTGGGTTCATAAGG
1 AAGATTCACAAGATTCTAAGTTTCGCAAAGGTTCTAGATTCATAAAGATTC-TAGGTTCATAAGG
*
8075414 ACTATT-AGATTCACAGGAAAGA
65 ACT-TTCAGATTCACAAGAAAGA
* * ** *
8075436 AAGATTCGCGAGATTCTAAGTTTCGCAAAGGTTCTAGATTCATAAAGATTCTAGGTTTGTAAGGG
1 AAGATTCACAAGATTCTAAGTTTCGCAAAGGTTCTAGATTCATAAAGATTCTAGGTTCATAAGGA
***
8075501 CTTTCAGATTTGGAAGAAAGA
66 CTTTCAGATTCACAAGAAAGA
* * * * * * ***
8075522 AAAATTCTCAAGATTCTAAGTTTTGTAAAAGTTCTAGATTCATAAAGATTTTAGGTTGGCAAGGA
1 AAGATTCACAAGATTCTAAGTTTCGCAAAGGTTCTAGATTCATAAAGATTCTAGGTTCATAAGGA
* **
8075587 CTTTCAAATTTGCAAGAAAGA
66 CTTTCAGATTCACAAGAAAGA
** * *
8075608 AAGATTTGCAAGGTT-TCAAGTTTCACAAAGGTT
1 AAGATTCACAAGATTCT-AAGTTTCGCAAAGGTT
8075641 AGAAAAAATG
Statistics
Matches: 167, Mismatches: 35, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
85 3 0.02
86 162 0.97
87 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (86 bp):
AAGATTCACAAGATTCTAAGTTTCGCAAAGGTTCTAGATTCATAAAGATTCTAGGTTCATAAGGA
CTTTCAGATTCACAAGAAAGA
Found at i:8081318 original size:19 final size:18
Alignment explanation
Indices: 8081296--8081378 Score: 71
Period size: 19 Copynumber: 4.4 Consensus size: 18
8081286 ATAAAAGTAG
8081296 ATAAAAACTAAAAAATAAA
1 ATAAAAA-TAAAAAATAAA
*
8081315 AT-AAAATAAAAACTTAAA
1 ATAAAAATAAAAA-ATAAA
*
8081333 ATGATGAAAT-AAAAATAAA
1 AT-A-AAAATAAAAAATAAA
*
8081352 ATGAAAATCAAAAAATAAA
1 ATAAAAAT-AAAAAATAAA
*
8081371 ATGAAAAT
1 ATAAAAAT
8081379 GGAAAAGGGA
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
17 10 0.19
18 10 0.19
19 25 0.47
20 4 0.08
21 4 0.08
ACGTcount: A:0.72, C:0.04, G:0.05, T:0.19
Consensus pattern (18 bp):
ATAAAAATAAAAAATAAA
Found at i:8081384 original size:19 final size:17
Alignment explanation
Indices: 8081306--8081378 Score: 85
Period size: 19 Copynumber: 4.0 Consensus size: 17
8081296 ATAAAAACTA
8081306 AAAAATAAAAT-AAAAT
1 AAAAATAAAATGAAAAT
8081322 AAAAACTTAAAATGATGAAAT
1 AAAAA--TAAAATGA--AAAT
8081343 AAAAATAAAATGAAAAT
1 AAAAATAAAATGAAAAT
8081360 CAAAAAATAAAATGAAAAT
1 --AAAAATAAAATGAAAAT
8081379 GGAAAAGGGA
Statistics
Matches: 50, Mismatches: 0, Indels: 11
0.82 0.00 0.18
Matches are distributed among these distances:
16 5 0.10
17 4 0.08
18 6 0.12
19 26 0.52
21 9 0.18
ACGTcount: A:0.73, C:0.03, G:0.05, T:0.19
Consensus pattern (17 bp):
AAAAATAAAATGAAAAT
Found at i:8082237 original size:9 final size:9
Alignment explanation
Indices: 8082225--8082278 Score: 54
Period size: 9 Copynumber: 6.0 Consensus size: 9
8082215 GAATAAAATG
8082225 AAATAATAA
1 AAATAATAA
*
8082234 AAATAAAAA
1 AAATAATAA
*
8082243 AAATAAAAA
1 AAATAATAA
*
8082252 AAATAACAA
1 AAATAATAA
* *
8082261 TAACAATAA
1 AAATAATAA
*
8082270 TAATAATAA
1 AAATAATAA
8082279 TGATGATGAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 39 1.00
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAATAA
Found at i:8082249 original size:15 final size:15
Alignment explanation
Indices: 8082219--8082278 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 15
8082209 TAAAAAGAAT
8082219 AAAATGAAATAATAAAA
1 AAAAT-AAA-AATAAAA
8082236 ATAAA-AAAAATAAAA
1 A-AAATAAAAATAAAA
* *
8082251 AAAATAACAATAACA
1 AAAATAAAAATAAAA
* *
8082266 ATAATAATAATAA
1 AAAATAAAAATAA
8082279 TGATGATGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
14 3 0.08
15 27 0.73
16 3 0.08
17 1 0.03
18 3 0.08
ACGTcount: A:0.77, C:0.03, G:0.02, T:0.18
Consensus pattern (15 bp):
AAAATAAAAATAAAA
Found at i:8082340 original size:5 final size:5
Alignment explanation
Indices: 8082326--8082405 Score: 70
Period size: 5 Copynumber: 15.0 Consensus size: 5
8082316 GTAATAATGG
* * *
8082326 TAATA AAATA TAATA TACTATA TAATA TAATTTA TACTA TACTA TAATAA
1 TAATA TAATA TAATA TA--ATA TAATA TAA--TA TAATA TAATA TAAT-A
* *
8082376 TAAGA TAATA TAATA TCATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA
8082406 AAAGTACACA
Statistics
Matches: 62, Mismatches: 8, Indels: 10
0.77 0.10 0.12
Matches are distributed among these distances:
5 49 0.79
6 4 0.06
7 9 0.15
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.39
Consensus pattern (5 bp):
TAATA
Found at i:8083300 original size:19 final size:19
Alignment explanation
Indices: 8083240--8083308 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
8083230 TCCCAAGCCA
* *
8083240 AAACCCTAAATCACCATGC
1 AAACCCTAAACCACAATGC
*** *
8083259 AAACCCTAAACCATTGTGT
1 AAACCCTAAACCACAATGC
*
8083278 AAACCCCAAACCACAATGC
1 AAACCCTAAACCACAATGC
*
8083297 AAACTCTAAACC
1 AAACCCTAAACC
8083309 CCAAAACCAA
Statistics
Matches: 38, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 38 1.00
ACGTcount: A:0.43, C:0.35, G:0.06, T:0.16
Consensus pattern (19 bp):
AAACCCTAAACCACAATGC
Found at i:8083398 original size:12 final size:12
Alignment explanation
Indices: 8083375--8083562 Score: 57
Period size: 12 Copynumber: 15.8 Consensus size: 12
8083365 ATTCTAAATG
8083375 AAACCTAAACCCT
1 AAACC-AAACCCT
*
8083388 AAACCAAACCCC
1 AAACCAAACCCT
*
8083400 AAACCCTAA-CC-
1 AAA-CCAAACCCT
*
8083411 AAACCCCAAACACT
1 AAA--CCAAACCCT
*
8083425 ATACCAAACCCT
1 AAACCAAACCCT
8083437 AAATCCAAA---T
1 AAA-CCAAACCCT
*
8083447 -GA--AAACCCT
1 AAACCAAACCCT
8083456 AAACCTTAAA-CC-
1 AAACC--AAACCCT
8083468 AAATCCAAACCCT
1 AAA-CCAAACCCT
* **
8083481 AAATCAAACTTT
1 AAACCAAACCCT
8083493 AAACCCTAAA-CC-
1 AAA-CC-AAACCCT
8083505 AAACCTTAAA--CT
1 AAACC--AAACCCT
8083517 AAACCTTAAACCCT
1 AAACC--AAACCCT
8083531 AAACCAAACCCT
1 AAACCAAACCCT
8083543 AAACC-AACCC-
1 AAACCAAACCCT
*
8083553 AAACTAAACC
1 AAACCAAACC
8083563 AAACCAACCT
Statistics
Matches: 136, Mismatches: 16, Indels: 48
0.68 0.08 0.24
Matches are distributed among these distances:
6 3 0.02
9 2 0.01
10 6 0.04
11 18 0.13
12 69 0.51
13 23 0.17
14 15 0.11
ACGTcount: A:0.49, C:0.37, G:0.01, T:0.14
Consensus pattern (12 bp):
AAACCAAACCCT
Found at i:8083469 original size:25 final size:26
Alignment explanation
Indices: 8083430--8083483 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
8083420 ACACTATACC
*
8083430 AAACCCTAAATCCAAATGAAAACCCT
1 AAACCCTAAATCCAAATCAAAACCCT
* *
8083456 AAACCTTAAA-CCAAATCCAAACCCT
1 AAACCCTAAATCCAAATCAAAACCCT
8083481 AAA
1 AAA
8083484 TCAAACTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.52, C:0.31, G:0.02, T:0.15
Consensus pattern (26 bp):
AAACCCTAAATCCAAATCAAAACCCT
Found at i:8083509 original size:31 final size:31
Alignment explanation
Indices: 8083375--8083546 Score: 133
Period size: 31 Copynumber: 5.5 Consensus size: 31
8083365 ATTCTAAATG
* **
8083375 AAACCTAAACCCTAAACCAAACCCCAAACCCT
1 AAACC-AAACCCTAAACTAAACCTTAAACCCT
* *
8083407 -AACCAAACCCCAAACACTATACC--AAACCCT
1 AAACCAAA-CCCTAA-ACTAAACCTTAAACCCT
***
8083437 AAATCCAAA-TGAAAACCCTAAACCTTAAA-CC-
1 AAA-CCAAACCCTAAA--CTAAACCTTAAACCCT
*
8083468 AAATCCAAACCCTAAA-TCAAACTTTAAACCCT
1 AAA-CCAAACCCTAAACT-AAACCTTAAACCCT
*
8083500 AAACCAAACCTTAAACTAAACCTTAAACCCT
1 AAACCAAACCCTAAACTAAACCTTAAACCCT
8083531 AAACCAAACCCTAAAC
1 AAACCAAACCCTAAAC
8083547 CAACCCAAAC
Statistics
Matches: 114, Mismatches: 13, Indels: 27
0.74 0.08 0.18
Matches are distributed among these distances:
29 2 0.02
30 22 0.19
31 67 0.59
32 20 0.18
33 3 0.03
ACGTcount: A:0.49, C:0.36, G:0.01, T:0.15
Consensus pattern (31 bp):
AAACCAAACCCTAAACTAAACCTTAAACCCT
Found at i:8083509 original size:56 final size:56
Alignment explanation
Indices: 8083378--8083515 Score: 136
Period size: 56 Copynumber: 2.5 Consensus size: 56
8083368 CTAAATGAAA
* *
8083378 CCTAAACCCTAAACCAAACCCCAAACCCTAACCAAACCCCAAACACTATACCAAAC
1 CCTAAACCCTAAACCAAACCCTAAACCCTAACCAAACCCCAAACACTAAACCAAAC
* ** * * * *
8083434 CCTAAATCC-AAATGAAAACCCTAAACCTTAAACCAAA-TCCAAACCCTAAATCAAAC
1 CCTAAACCCTAAA-CCAAACCCTAAACCCT-AACCAAACCCCAAACACTAAACCAAAC
** *
8083490 TTTAAACCCTAAACCAAACCTTAAAC
1 CCTAAACCCTAAACCAAACCCTAAAC
8083516 TAAACCTTAA
Statistics
Matches: 64, Mismatches: 15, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
55 3 0.05
56 51 0.80
57 10 0.16
ACGTcount: A:0.48, C:0.37, G:0.01, T:0.14
Consensus pattern (56 bp):
CCTAAACCCTAAACCAAACCCTAAACCCTAACCAAACCCCAAACACTAAACCAAAC
Found at i:8083547 original size:19 final size:19
Alignment explanation
Indices: 8083378--8083535 Score: 137
Period size: 19 Copynumber: 8.4 Consensus size: 19
8083368 CTAAATGAAA
8083378 CCTAAACCCTAAACCAAAC
1 CCTAAACCCTAAACCAAAC
*
8083397 CCCAAACCCT-AACCAAAC
1 CCTAAACCCTAAACCAAAC
* * *
8083415 CCCAAACACTATACCAAAC
1 CCTAAACCCTAAACCAAAC
* **
8083434 CCTAAATCC-AAATGAAAAC
1 CCTAAACCCTAAA-CCAAAC
* *
8083453 CCTAAACCTTAAACCAAAT
1 CCTAAACCCTAAACCAAAC
*
8083472 CC-AAACCCTAAATCAAAC
1 CCTAAACCCTAAACCAAAC
**
8083490 TTTAAACCCTAAACCAAAC
1 CCTAAACCCTAAACCAAAC
*
8083509 CTTAAA--CTAAACCTTAAAC
1 CCTAAACCCTAAACC--AAAC
8083528 CCTAAACC
1 CCTAAACC
8083536 AAACCCTAAA
Statistics
Matches: 109, Mismatches: 22, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
17 7 0.06
18 32 0.29
19 67 0.61
20 3 0.03
ACGTcount: A:0.47, C:0.37, G:0.01, T:0.15
Consensus pattern (19 bp):
CCTAAACCCTAAACCAAAC
Found at i:8088389 original size:18 final size:19
Alignment explanation
Indices: 8088357--8088392 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8088347 ATAACAATGT
8088357 TTTTTTCTTTAAATTTTTA
1 TTTTTTCTTTAAATTTTTA
*
8088376 TTTTTT-TTTCAATTTTT
1 TTTTTTCTTTAAATTTTT
8088393 TGAAACAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTTTCTTTAAATTTTTA
Found at i:8088434 original size:72 final size:70
Alignment explanation
Indices: 8088296--8088438 Score: 155
Period size: 72 Copynumber: 2.0 Consensus size: 70
8088286 AGTCACTCAA
* * * * *
8088296 AAATTTATCTTTTTTTTTCTCTTTTTGGAACAAAAACAAATCAAATTTAAAATAACAATGTTTTT
1 AAATTTATATTTTTTTTTCTCTTTTTGAAACAAAAACAAATCAAATTTAAAACAACAATCTCTTT
8088361 TTCTTT
66 TT-TTT
* ** *
8088367 AAATTTTTATTTTTTTTTCAAT-TTTTTGAAACAAAAGTAGATCAAATTTAAAACAA-AACTCTC
1 AAATTTATATTTTTTTTTC--TCTTTTTGAAACAAAAACAAATCAAATTTAAAACAACAA-TCTC
8088430 TTTTTTTT
63 TTTTTTTT
8088438 A
1 A
8088439 TGTTTATTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
71 23 0.38
72 36 0.60
73 1 0.02
ACGTcount: A:0.36, C:0.10, G:0.04, T:0.49
Consensus pattern (70 bp):
AAATTTATATTTTTTTTTCTCTTTTTGAAACAAAAACAAATCAAATTTAAAACAACAATCTCTTT
TTTTT
Found at i:8088892 original size:20 final size:20
Alignment explanation
Indices: 8088862--8088958 Score: 79
Period size: 20 Copynumber: 4.5 Consensus size: 20
8088852 TAGGTTAAGG
8088862 TTAGGGTTTTAGGGTTTGGAT
1 TTAGGG-TTTAGGGTTTGGAT
*
8088883 TTAGGGTTTAGGGTATGGAT
1 TTAGGGTTTAGGGTTTGGAT
8088903 TT-GGGATTTAAGGCTTAAGGTTTGGAT
1 TTAGGG-TTT-A-G-----GGTTTGGAT
* *
8088930 TTAAGGTTTAGCGTTTGGAT
1 TTAGGGTTTAGGGTTTGGAT
8088950 TTAGGGTTT
1 TTAGGGTTT
8088959 CACAAAAATA
Statistics
Matches: 62, Mismatches: 5, Indels: 19
0.72 0.06 0.22
Matches are distributed among these distances:
19 3 0.05
20 34 0.55
21 7 0.11
22 1 0.02
25 1 0.02
26 1 0.02
27 13 0.21
28 2 0.03
ACGTcount: A:0.19, C:0.02, G:0.35, T:0.44
Consensus pattern (20 bp):
TTAGGGTTTAGGGTTTGGAT
Found at i:8088894 original size:7 final size:7
Alignment explanation
Indices: 8088862--8088958 Score: 51
Period size: 7 Copynumber: 14.3 Consensus size: 7
8088852 TAGGTTAAGG
8088862 TTAGGGTT
1 TTAGGG-T
8088870 TTAGGGT
1 TTAGGGT
*
8088877 TT-GGAT
1 TTAGGGT
8088883 TTAGGGT
1 TTAGGGT
8088890 TTAGGGT
1 TTAGGGT
* *
8088897 AT-GGAT
1 TTAGGGT
8088903 TT-GGGAT
1 TTAGGG-T
* *
8088910 TTAAGGC
1 TTAGGGT
*
8088917 TTAAGGT
1 TTAGGGT
*
8088924 TT-GGAT
1 TTAGGGT
*
8088930 TTAAGGT
1 TTAGGGT
*
8088937 TTAGCGT
1 TTAGGGT
*
8088944 TT-GGAT
1 TTAGGGT
8088950 TTAGGGT
1 TTAGGGT
8088957 TT
1 TT
8088959 CACAAAAATA
Statistics
Matches: 66, Mismatches: 18, Indels: 11
0.69 0.19 0.12
Matches are distributed among these distances:
6 19 0.29
7 39 0.59
8 8 0.12
ACGTcount: A:0.19, C:0.02, G:0.35, T:0.44
Consensus pattern (7 bp):
TTAGGGT
Found at i:8088909 original size:27 final size:27
Alignment explanation
Indices: 8088879--8088931 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
8088869 TTTAGGGTTT
* * *
8088879 GGATTTAGGGTTTAGGGTATGGATTTG
1 GGATTTAAGGCTTAAGGTATGGATTTG
*
8088906 GGATTTAAGGCTTAAGGTTTGGATTT
1 GGATTTAAGGCTTAAGGTATGGATTT
8088932 AAGGTTTAGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.21, C:0.02, G:0.36, T:0.42
Consensus pattern (27 bp):
GGATTTAAGGCTTAAGGTATGGATTTG
Found at i:8090144 original size:12 final size:11
Alignment explanation
Indices: 8090111--8090148 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
8090101 AAATCAAACA
8090111 AAAAATGAATG
1 AAAAATGAATG
*
8090122 AAATATG-ATG
1 AAAAATGAATG
8090132 AAAAATGGAATG
1 AAAAAT-GAATG
8090144 AAAAA
1 AAAAA
8090149 AGAGATGGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
10 8 0.35
11 7 0.30
12 8 0.35
ACGTcount: A:0.63, C:0.00, G:0.18, T:0.18
Consensus pattern (11 bp):
AAAAATGAATG
Found at i:8090250 original size:24 final size:23
Alignment explanation
Indices: 8090217--8090266 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
8090207 AAGCACAAAA
*
8090217 TTTTTTTTTTCTTCTCATGTTTT
1 TTTTTTTTTTCTTCTCATGTTGT
* *
8090240 TTTTTTCTTTTTTTTTCATGTTGT
1 TTTTTT-TTTTCTTCTCATGTTGT
8090264 TTT
1 TTT
8090267 CCTTCTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 6 0.26
24 17 0.74
ACGTcount: A:0.04, C:0.10, G:0.06, T:0.80
Consensus pattern (23 bp):
TTTTTTTTTTCTTCTCATGTTGT
Found at i:8091901 original size:31 final size:31
Alignment explanation
Indices: 8091769--8091918 Score: 142
Period size: 31 Copynumber: 4.9 Consensus size: 31
8091759 TTCTTTATAA
*
8091769 GTGCTAGCTAAACTGGGCTTAAATCTCTTT-
1 GTGCTAGCTAAACTGGGCTTAATTCTCTTTG
* * * *
8091799 GTGCTAGCTAAACTAGACTTAATACT-TGTCG
1 GTGCTAGCTAAACTGGGCTTAATTCTCT-TTG
* * * **
8091830 GTGCCAACTAAAATGGGCTTAACCCTCTTTG
1 GTGCTAGCTAAACTGGGCTTAATTCTCTTTG
* *
8091861 GTGCCAGCTAATCTGGGCTTAATTCTCTTTG
1 GTGCTAGCTAAACTGGGCTTAATTCTCTTTG
* * *
8091892 GTACTAGCTAGATTGGGCTTAATTCTC
1 GTGCTAGCTAAACTGGGCTTAATTCTC
8091919 CTTGTGCCAA
Statistics
Matches: 94, Mismatches: 23, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
29 1 0.01
30 23 0.24
31 69 0.73
32 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (31 bp):
GTGCTAGCTAAACTGGGCTTAATTCTCTTTG
Found at i:8102893 original size:21 final size:20
Alignment explanation
Indices: 8102853--8102898 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
8102843 GATTTGAAGA
*
8102853 ATTTTTTCTTTTGTTGGATT
1 ATTTTTTATTTTGTTGGATT
* *
8102873 TTTTTTTATTTTGTTTTGATT
1 ATTTTTTATTTTG-TTGGATT
8102894 ATTTT
1 ATTTT
8102899 CATTTTTCCC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.11, C:0.02, G:0.11, T:0.76
Consensus pattern (20 bp):
ATTTTTTATTTTGTTGGATT
Found at i:8103471 original size:25 final size:26
Alignment explanation
Indices: 8103443--8103501 Score: 88
Period size: 25 Copynumber: 2.4 Consensus size: 26
8103433 AGTATATAAT
8103443 AAATGACAAAG-TTAAAATATGCATG
1 AAATGACAAAGATTAAAATATGCATG
*
8103468 AAATGAC-ATGATTAAAATATGCATG
1 AAATGACAAAGATTAAAATATGCATG
8103493 AAATG-CAAA
1 AAATGACAAA
8103502 ATACACCCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 3 0.10
25 27 0.90
ACGTcount: A:0.53, C:0.08, G:0.15, T:0.24
Consensus pattern (26 bp):
AAATGACAAAGATTAAAATATGCATG
Found at i:8103555 original size:9 final size:8
Alignment explanation
Indices: 8103532--8103581 Score: 55
Period size: 9 Copynumber: 5.9 Consensus size: 8
8103522 TTTTTGAAAA
8103532 ATTTTTTC
1 ATTTTTTC
*
8103540 TTGTTTTTC
1 AT-TTTTTC
8103549 ACTTTTTTC
1 A-TTTTTTC
*
8103558 ATTTTCTCC
1 ATTTT-TTC
8103567 ATTTTTTC
1 ATTTTTTC
8103575 ATTTTTT
1 ATTTTTT
8103582 GTGGGAAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
8 14 0.40
9 20 0.57
10 1 0.03
ACGTcount: A:0.10, C:0.16, G:0.02, T:0.72
Consensus pattern (8 bp):
ATTTTTTC
Found at i:8104792 original size:27 final size:27
Alignment explanation
Indices: 8104731--8104788 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
8104721 TAGGTTAGGG
* *
8104731 TTTGGATTTGGGGCTTAGGGTTTAGCA
1 TTTGGATTGGGGGCTTAGGGTATAGCA
* *
8104758 TTTGGATTGGGGGTTTAGGGTAT-GGA
1 TTTGGATTGGGGGCTTAGGGTATAGCA
8104784 TTTGG
1 TTTGG
8104789 GATTTCATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.14, C:0.03, G:0.41, T:0.41
Consensus pattern (27 bp):
TTTGGATTGGGGGCTTAGGGTATAGCA
Found at i:8116496 original size:64 final size:62
Alignment explanation
Indices: 8116427--8116689 Score: 217
Period size: 64 Copynumber: 4.1 Consensus size: 62
8116417 CATGGCATTG
* *
8116427 TTGAAGGC-TTTTTGGCCAAAAACACCTTAAATAATCCATTCAAAAAAATTTTGGAGAGGGATTA
1 TTGAAGGCATTTTTGGCCAAAAACGCCTT-AATAATCCATACAAAAAAATTTT-GA-AGGGATTA
** *** * *
8116491 TTGAAGGTGTTTTCAACCAAAAATTGCCTTCAATAATCCATAC-AAAAAATTTTGAAAAGGATTA
1 TTGAAGGCATTTTTGGCCAAAAA-CGCCTT-AATAATCCATACAAAAAAATTTTG-AAGGGATTA
* * * * **
8116555 TTGAAGGCATTTTTGTCCAAAAATGCCTTCATGAATCTATACAAAAATTTTTTTGAAGGGATTA
1 TTGAAGGCATTTTTGGCCAAAAACGCCTTAAT-AATCCATACAAAAA-AATTTTGAAGGGATTA
* * * * * *
8116619 TTAAAGGCATTTTTGGTCAAAAACGTCTTTAATAATCCCT-CATAAAAATTTATTAAGGGAATTA
1 TTGAAGGCATTTTTGGCCAAAAACG-CCTTAATAATCCATACAAAAAAATTT-TGAAGGG-ATTA
8116683 TTGAAGG
1 TTGAAGG
8116690 TGTTTTTGTT
Statistics
Matches: 158, Mismatches: 32, Indels: 18
0.76 0.15 0.09
Matches are distributed among these distances:
62 5 0.03
63 25 0.16
64 81 0.51
65 32 0.20
66 15 0.09
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (62 bp):
TTGAAGGCATTTTTGGCCAAAAACGCCTTAATAATCCATACAAAAAAATTTTGAAGGGATTA
Found at i:8116640 original size:128 final size:128
Alignment explanation
Indices: 8116427--8116786 Score: 295
Period size: 128 Copynumber: 2.8 Consensus size: 128
8116417 CATGGCATTG
* * ** * *
8116427 TTGAAGGC-TTTTTGGCCAAAAACACCTTAAATAATCCATTCAAAAAAATTTTG--GAGAGGGAT
1 TTGAAGGCATTTTTGTCCAAAAACACCTTCAGCAATCCATAC-AAAAATTTTTGTTGA-AGGGAT
* ** *** *
8116489 TATTGAAGGTGTTTTCAACCAAAAATTGCCTTCAATAATCCATACA-AAAAATTT-TGAAAAGG-
64 TATTAAAGGCATTTT-TGGCAAAAA-CGCCTTCAATAATCCAT-CATAAAAATTTAT-AAAAGGA
8116551 ATTA
125 ATTA
** *
8116555 TTGAAGGCATTTTTGTCCAAAAATGCCTTCATG-AATCTATACAAAAATTTTT-TTGAAGGGATT
1 TTGAAGGCATTTTTGTCCAAAAACACCTTCA-GCAATCCATACAAAAATTTTTGTTGAAGGGATT
* * * * *
8116618 ATTAAAGGCATTTTTGGTCAAAAACGTCTTTAATAATCCCTCATAAAAATTTATTAAGGGAATTA
65 ATTAAAGGCATTTTTGG-CAAAAACGCCTTCAATAATCCATCATAAAAATTTATAAAAGGAATTA
** * ** * * * *
8116683 TTGAAGGTGTTTTTGTTCGTAAACACCTTCAGCAATCCATATACAAATTTTTGTTGAGGGGTTTA
1 TTGAAGGCATTTTTGTCCAAAAACACCTTCAGCAATCCATACAAAAATTTTTGTTGAAGGGATTA
* * *
8116748 TTAAAGGCGTTTTTGGCCAAAACGCCTTGAATAATCCAT
66 TTAAAGGCATTTTTGGCAAAAACGCCTTCAATAATCCAT
8116787 GAATTATTCA
Statistics
Matches: 185, Mismatches: 37, Indels: 20
0.76 0.15 0.08
Matches are distributed among these distances:
126 2 0.01
127 26 0.14
128 105 0.57
129 52 0.28
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (128 bp):
TTGAAGGCATTTTTGTCCAAAAACACCTTCAGCAATCCATACAAAAATTTTTGTTGAAGGGATTA
TTAAAGGCATTTTTGGCAAAAACGCCTTCAATAATCCATCATAAAAATTTATAAAAGGAATTA
Found at i:8120296 original size:73 final size:73
Alignment explanation
Indices: 8120177--8120320 Score: 279
Period size: 73 Copynumber: 2.0 Consensus size: 73
8120167 CAGTAGCAGA
*
8120177 AGAAGTATGTTCTTTGGATTCCATAATATATGTGATTTTGATCATAATTATATGAAATACACCAA
1 AGAAGTATGTTCTTTGGATTCCATAATATATGTGATTTTGATCATAATTATAAGAAATACACCAA
8120242 ATTGTCAG
66 ATTGTCAG
8120250 AGAAGTATGTTCTTTGGATTCCATAATATATGTGATTTTGATCATAATTATAAGAAATACACCAA
1 AGAAGTATGTTCTTTGGATTCCATAATATATGTGATTTTGATCATAATTATAAGAAATACACCAA
8120315 ATTGTC
66 ATTGTC
8120321 TCTTTAAATT
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 70 1.00
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38
Consensus pattern (73 bp):
AGAAGTATGTTCTTTGGATTCCATAATATATGTGATTTTGATCATAATTATAAGAAATACACCAA
ATTGTCAG
Found at i:8121628 original size:291 final size:291
Alignment explanation
Indices: 8121203--8122011 Score: 1013
Period size: 293 Copynumber: 2.8 Consensus size: 291
8121193 TGCCATAAAC
* * * *
8121203 GCCTTGAATAATCCCCTCTAAATGAATAATTCATGGGTTATTGAAGGTATTTTTTTATG-ATAAA
1 GCCTTCAATAATCCCCTCTAAATGAATAATTCATGGGTTATAGAA-G-ATGTTTTTA-GCAAAAA
* * *
8121267 TACCTTGAATAATCCATGAATTATTTAAGTCGTTTTTAGCTAGAAATGCCTTCAATAACCCCATT
63 TGCCTTGAATAATCCATGAATTATTCAAGGCGTTTTTAGCTAGAAATGCCTTCAATAACCCCATT
*
8121332 CAATATTTTGTAAAGGATTATTCAAGGCGTTTTTGGCTAAAAAAGCCTTCAATAATCCCATCAAA
128 CAATATTTTGTAAAGGATTATTCAAGGCATTTTTGGCTAAAAAAGCCTTCAATAATCCCATC-AA
*
8121397 AAAAATTGAAGGGGATTTTTCAAGGCATTTTCTAAG-AAAAATGCCTTGAATA-TAAAAAAAAAA
192 AAAAATTGAAGGGAATTTTTCAAGGCATTTTCTAAGCAAAAATGCCTTGAATATTAAAAAAAAAA
* *
8121460 GTTGGAATTATTTAAGGCGTTTTTTGATAGAAAAT
257 GCTGGAATTATTAAAGGCGTTTTTTGATAGAAAAT
* *
8121495 GCCTTCAATAATCCCCTCTAAATGAATAATTTATGGGTTATAGAAGATGATTTTAGCCAAAAATG
1 GCCTTCAATAATCCCCTCTAAATGAATAATTCATGGGTTATAGAAGATGTTTTTAG-CAAAAATG
* * * * * * *
8121560 CCTTGAAGAATCCATGACTTATTCAAGGCATTTTTAACTAGAAGTGCCTTTAATAACTCCATTCA
65 CCTTGAATAATCCATGAATTATTCAAGGCGTTTTTAGCTAGAAATGCCTTCAATAACCCCATTCA
* ** *
8121625 ATATTTTGT-AAGGATTATTCAAGGCATATTTTGAC-AAAAAACGGTTTCAATAATCCCATCATA
130 ATATTTTGTAAAGGATTATTCAAGGCAT-TTTTGGCTAAAAAA-GCCTTCAATAATCCCATCAAA
* * ** * * * *
8121688 AAACTTAAAGGGAATTATTT-AAGGTGTTTGCTAGGCAAAAATGCCTTGAATATTTCAAAACAAA
193 AAAATTGAAGGGAATT-TTTCAAGGCATTTTCTAAGCAAAAATGCCTTGAATA-TTAAAAAAAAA
* * *
8121752 TGCTGGGATTATTAAAGGTGTTTTTTGATAGAAAAT
256 AGCTGGAATTATTAAAGGCGTTTTTTGATAGAAAAT
** * * *
8121788 GCCTTCAATAATCCCCAATGAATGAATAATTCATGGGTTATATAAGATGTTTTTGGCAAAAAATG
1 GCCTTCAATAATCCCCTCTAAATGAATAATTCATGGGTTATAGAAGATGTTTTTAGC-AAAAATG
* * **
8121853 CCTTAAATAATCCATGAATTATTCAAGGTGTTTTTAGCTAGAAACACCTTCAATAACCCCATTCA
65 CCTTGAATAATCCATGAATTATTCAAGGCGTTTTTAGCTAGAAATGCCTTCAATAACCCCATTCA
* *
8121918 ATATTTTGTAAGGGATTATTCAAGGCATTTTTTAGCTAAAAATA-CCTTCAATAATCCCATCTAA
130 ATATTTTGTAAAGGATTATTCAAGGCA-TTTTTGGCTAAAAA-AGCCTTCAATAATCCCATC-AA
* *
8121982 AAAAATGGAA-GGAATTATTCAAGGCATTTT
192 AAAAATTGAAGGGAATTTTTCAAGGCATTTT
8122012 TGACCAAAAA
Statistics
Matches: 436, Mismatches: 66, Indels: 28
0.82 0.12 0.05
Matches are distributed among these distances:
289 1 0.00
290 56 0.13
291 112 0.26
292 43 0.10
293 160 0.37
294 49 0.11
295 14 0.03
296 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (291 bp):
GCCTTCAATAATCCCCTCTAAATGAATAATTCATGGGTTATAGAAGATGTTTTTAGCAAAAATGC
CTTGAATAATCCATGAATTATTCAAGGCGTTTTTAGCTAGAAATGCCTTCAATAACCCCATTCAA
TATTTTGTAAAGGATTATTCAAGGCATTTTTGGCTAAAAAAGCCTTCAATAATCCCATCAAAAAA
ATTGAAGGGAATTTTTCAAGGCATTTTCTAAGCAAAAATGCCTTGAATATTAAAAAAAAAAGCTG
GAATTATTAAAGGCGTTTTTTGATAGAAAAT
Found at i:8121968 original size:63 final size:63
Alignment explanation
Indices: 8121868--8122012 Score: 170
Period size: 63 Copynumber: 2.3 Consensus size: 63
8121858 AATAATCCAT
* * *** *
8121868 GAATTATTCAAGG--TGTTTTTAGCTAGAAACACCTTCAATAACCCCAT-TCAATATTTTGTAAG
1 GAATTATTCAAGGCAT-TTTTTAGCTAAAAACACCTTCAATAACCCCATCT-AAAAAAATGGAAG
* * *
8121930 GGATTATTCAAGGCATTTTTTAGCTAAAAATACCTTCAATAATCCCATCTAAAAAAATGGAAG
1 GAATTATTCAAGGCATTTTTTAGCTAAAAACACCTTCAATAACCCCATCTAAAAAAATGGAAG
8121993 GAATTATTCAAGGCATTTTT
1 GAATTATTCAAGGCATTTTT
8122013 GACCAAAAAC
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
62 12 0.17
63 56 0.80
64 2 0.03
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (63 bp):
GAATTATTCAAGGCATTTTTTAGCTAAAAACACCTTCAATAACCCCATCTAAAAAAATGGAAG
Found at i:8122046 original size:63 final size:63
Alignment explanation
Indices: 8121868--8122048 Score: 152
Period size: 63 Copynumber: 2.9 Consensus size: 63
8121858 AATAATCCAT
** * * * * *** *
8121868 GAATTATTCAAGGTGTTTTT-AGCTAGAAACACCTTCAATAACCCCAT-TCAATATTTTGTAAG
1 GAATTATTCAAGGCATTTTTGAGCCAAAAACACCTTCAATAATCCCATAT-AAAAAAATGGAAG
* * * * *
8121930 GGATTATTCAAGGCATTTTTTAGCTAAAAATACCTTCAATAATCCCATCTAAAAAAATGGAAG
1 GAATTATTCAAGGCATTTTTGAGCCAAAAACACCTTCAATAATCCCATATAAAAAAATGGAAG
* * * *
8121993 GAATTATTCAAGGCATTTTTGA-CCAAAAACACTTTTAGTAATCCACTTATAAAAAA
1 GAATTATTCAAGGCATTTTTGAGCCAAAAACACCTTCAATAATCC-CATATAAAAAA
8122049 TATAAGGGGA
Statistics
Matches: 96, Mismatches: 20, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
62 34 0.35
63 61 0.64
64 1 0.01
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.33
Consensus pattern (63 bp):
GAATTATTCAAGGCATTTTTGAGCCAAAAACACCTTCAATAATCCCATATAAAAAAATGGAAG
Found at i:8129745 original size:24 final size:24
Alignment explanation
Indices: 8129705--8129751 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
8129695 AAAGCATACC
8129705 ATATTATGATTATAAATA-AATTA
1 ATATTATGATTATAAATATAATTA
8129728 ATATTAATGATTGA-AAATATAATT
1 ATATT-ATGATT-ATAAATATAATT
8129752 TTTTAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 5 0.24
24 11 0.52
25 5 0.24
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (24 bp):
ATATTATGATTATAAATATAATTA
Found at i:8129972 original size:55 final size:55
Alignment explanation
Indices: 8129844--8130088 Score: 145
Period size: 55 Copynumber: 4.5 Consensus size: 55
8129834 AAAATATAAT
*
8129844 AAAAAATTTAAAATATATAAGTCTATACTGTCAATCTCTAACCATCGGTATAGGTA
1 AAAAAATTTAAAA-ATATAAGTCTATACTGTCAATCTCTAACCATCGATATAGGTA
* *** * * * * *
8129900 TATCCA-TTAAAGCATATAATTCTATATTGAT-AGTCTCTAACCGTCGATATAGGTA
1 AAAAAATTTAAA-AATATAAGTCTATACTG-TCAATCTCTAACCATCGATATAGGTA
* * * * * * *
8129955 AAAAAATTTAAAAATATAAGTCTACACTGACAGAT-GCTAAGCGTCGGTATAAGTA
1 AAAAAATTTAAAAATATAAGTCTATACTGTCA-ATCTCTAACCATCGATATAGGTA
* ** *
8130010 AGAAAAA-TT----A-A-AAGTCTATACTGACAGGCAT-TAACCATCAATATAGGTCA
1 A-AAAAATTTAAAAATATAAGTCTATACTGTCAATC-TCTAACCATCGATATAGGT-A
8130060 AAAAAA-TTAAAACATATAAGTCTATACTG
1 AAAAAATTTAAAA-ATATAAGTCTATACTG
8130089 ACGAGTGCTA
Statistics
Matches: 140, Mismatches: 33, Indels: 32
0.68 0.16 0.16
Matches are distributed among these distances:
49 33 0.24
50 3 0.02
51 1 0.01
54 1 0.01
55 76 0.54
56 26 0.19
ACGTcount: A:0.44, C:0.14, G:0.13, T:0.29
Consensus pattern (55 bp):
AAAAAATTTAAAAATATAAGTCTATACTGTCAATCTCTAACCATCGATATAGGTA
Found at i:8130108 original size:105 final size:103
Alignment explanation
Indices: 8129937--8130126 Score: 260
Period size: 105 Copynumber: 1.8 Consensus size: 103
8129927 TGATAGTCTC
* * *
8129937 TAACCGTCGATATAGGTAAAAAAATTTAAAAATATAAGTCTACACTGACAGATGCTAAGCGTCGG
1 TAACCATCAATATAGGTAAAAAAATTTAAAAATATAAGTCTACACTGACAGATGCTAAGCATCGG
8130002 TATAAGTAAGAAAAATTAAAAGTCTATACTGACAGGCAT
66 TATAAGTAAG-AAAATTAAAAGTCTATACTGACAGGCAT
*
8130041 TAACCATCAATATAGGTCAAAAAAA-TTAAAACATATAAGTCTATACTGAC-GAGTGCT-AGCCA
1 TAACCATCAATATAGGT-AAAAAAATTTAAAA-ATATAAGTCTACACTGACAGA-TGCTAAG-CA
* *
8130103 TCGGTATAGGTGAGAAAATTAAAA
62 TCGGTATAAGTAAGAAAATTAAAA
8130127 CATTTTTTAC
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
104 35 0.46
105 41 0.54
ACGTcount: A:0.45, C:0.14, G:0.17, T:0.25
Consensus pattern (103 bp):
TAACCATCAATATAGGTAAAAAAATTTAAAAATATAAGTCTACACTGACAGATGCTAAGCATCGG
TATAAGTAAGAAAATTAAAAGTCTATACTGACAGGCAT
Found at i:8130111 original size:56 final size:54
Alignment explanation
Indices: 8130021--8130129 Score: 130
Period size: 56 Copynumber: 2.0 Consensus size: 54
8130011 GAAAAATTAA
8130021 AAGTCTATACTGACAGGCATTAACCATCAATATAGGTCAAAAAAATTAAAACATAT
1 AAGTCTATACTGACAGGCA-TAACCATCAATATAGGT-AAAAAAATTAAAACATAT
* ** * *
8130077 AAGTCTATACTGACGAGTGC-TAGCCATCGGTATAGGTGAGAAAATTAAAACAT
1 AAGTCTATACTGAC-AG-GCATAACCATCAATATAGGTAAAAAAATTAAAACAT
8130130 TTTTTACCTA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
55 14 0.30
56 28 0.61
57 2 0.04
58 2 0.04
ACGTcount: A:0.43, C:0.16, G:0.17, T:0.25
Consensus pattern (54 bp):
AAGTCTATACTGACAGGCATAACCATCAATATAGGTAAAAAAATTAAAACATAT
Found at i:8130605 original size:26 final size:26
Alignment explanation
Indices: 8130569--8130627 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
8130559 AAATGACGGC
*
8130569 ATGGCTCTACCTTAGGTAAGCTTCCG
1 ATGGCTCTACCCTAGGTAAGCTTCCG
8130595 ATGGCTCTACCCTAGGTAAGCTTCCG
1 ATGGCTCTACCCTAGGTAAGCTTCCG
8130621 ATGGCTC
1 ATGGCTC
8130628 ACGATATGCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.19, C:0.29, G:0.24, T:0.29
Consensus pattern (26 bp):
ATGGCTCTACCCTAGGTAAGCTTCCG
Found at i:8131892 original size:7 final size:6
Alignment explanation
Indices: 8131875--8131910 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
8131865 TTTAAAATCA
*
8131875 TATTTT TATTTT TAATTT TATTTT TATTCTT TATTT
1 TATTTT TATTTT TATTTT TATTTT TATT-TT TATTT
8131911 AATTTTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (6 bp):
TATTTT
Found at i:8131896 original size:18 final size:18
Alignment explanation
Indices: 8131875--8131916 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
8131865 TTTAAAATCA
8131875 TATTTTTATT-TTTAATTT
1 TATTTTTATTCTTT-ATTT
8131893 TATTTTTATTCTTTATTT
1 TATTTTTATTCTTTATTT
*
8131911 AATTTT
1 TATTTT
8131917 ATTATTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 19 0.86
19 3 0.14
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (18 bp):
TATTTTTATTCTTTATTT
Found at i:8131923 original size:13 final size:12
Alignment explanation
Indices: 8131878--8131919 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
8131868 AAAATCATAT
8131878 TTTTATTTTTAA
1 TTTTATTTTTAA
8131890 TTTTATTTTT-A
1 TTTTATTTTTAA
*
8131901 TTCTT-TATTTAA
1 TT-TTATTTTTAA
8131913 TTTTATT
1 TTTTATT
8131920 ATTTTAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 9 0.36
12 16 0.64
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTATTTTTAA
Found at i:8131925 original size:18 final size:18
Alignment explanation
Indices: 8131878--8131925 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
8131868 AAAATCATAT
* *
8131878 TTTTATTTTTAATTTTAT
1 TTTTATTTTTTATTTTAA
*
8131896 TTTTATTCTTTA-TTTAA
1 TTTTATTTTTTATTTTAA
8131913 TTTTATTATTTTA
1 TTTTATT-TTTTA
8131926 AAAATACAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 11 0.44
18 14 0.56
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTTATTTTTTATTTTAA
Found at i:8132393 original size:13 final size:12
Alignment explanation
Indices: 8132368--8132409 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 12
8132358 AAAATTTTTT
8132368 TTTATTTTT-TA
1 TTTATTTTTATA
8132379 TTTATCTTTTATA
1 TTTAT-TTTTATA
8132392 TTTTATTTTTATTA
1 -TTTATTTTTA-TA
8132406 TTTA
1 TTTA
8132410 ATAATTTCCC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 5 0.19
12 4 0.15
13 11 0.41
14 7 0.26
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTATTTTTATA
Found at i:8134000 original size:17 final size:17
Alignment explanation
Indices: 8133978--8134011 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
8133968 CCCCAAAGCC
8133978 TTATTTCTTA-TTTCTTA
1 TTATTT-TTATTTTCTTA
8133995 TTATTTTTATTTTCTTA
1 TTATTTTTATTTTCTTA
8134012 AATTTTCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.74
Consensus pattern (17 bp):
TTATTTTTATTTTCTTA
Found at i:8135049 original size:24 final size:22
Alignment explanation
Indices: 8135022--8135072 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 22
8135012 GTTAAGCTTC
*
8135022 TTTTTCTCTTTTTTAATAATTAAT
1 TTTTTCACTTTTTT-ATAATT-AT
* *
8135046 TTTTACACTTTTTTATTATTAT
1 TTTTTCACTTTTTTATAATTAT
8135068 TTTTT
1 TTTTT
8135073 AAAATAATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 6 0.26
23 5 0.22
24 12 0.52
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTTTCACTTTTTTATAATTAT
Found at i:8139800 original size:83 final size:82
Alignment explanation
Indices: 8139685--8139843 Score: 246
Period size: 83 Copynumber: 1.9 Consensus size: 82
8139675 GTCTTAGAAC
8139685 ACATGTCCTTGGAAAGATTTATGACATCCAACACTAACAAGAATCCCTTTTTGGATTCTTCCATG
1 ACATGTCCTTGGAAAGATTTATGACATCCAACACTAACAAGAATCCCTTTTTGGATTCTTCCATG
8139750 CTAAACCTTTTTAGGAA
66 CTAAACCTTTTTAGGAA
* * *** * *
8139767 ACATGTCCTTGGAAAAGATTTATGCCATGCAACACTGGTAAGGATCCCTTTTTGGATTCTTTCAT
1 ACATGTCCTTGG-AAAGATTTATGACATCCAACACTAACAAGAATCCCTTTTTGGATTCTTCCAT
8139832 GCTAAACCTTTT
65 GCTAAACCTTTT
8139844 AGCACTTTAT
Statistics
Matches: 69, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
82 12 0.17
83 57 0.83
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (82 bp):
ACATGTCCTTGGAAAGATTTATGACATCCAACACTAACAAGAATCCCTTTTTGGATTCTTCCATG
CTAAACCTTTTTAGGAA
Found at i:8149818 original size:20 final size:20
Alignment explanation
Indices: 8149790--8149844 Score: 56
Period size: 25 Copynumber: 2.5 Consensus size: 20
8149780 GAGTTTTATG
*
8149790 ATGAATATGAAGAGAATGTT
1 ATGAGTATGAAGAGAATGTT
8149810 ATGAGTATGATACGAAGAGAATGTT
1 ATGAG--T-AT--GAAGAGAATGTT
8149835 ATGAGTATGA
1 ATGAGTATGA
8149845 TAGCCAGTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 10
0.73 0.03 0.25
Matches are distributed among these distances:
20 6 0.21
22 3 0.10
23 3 0.10
25 17 0.59
ACGTcount: A:0.42, C:0.02, G:0.27, T:0.29
Consensus pattern (20 bp):
ATGAGTATGAAGAGAATGTT
Found at i:8149828 original size:25 final size:25
Alignment explanation
Indices: 8149798--8149846 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
8149788 TGATGAATAT
8149798 GAAGAGAATGTTATGAGTATGATAC
1 GAAGAGAATGTTATGAGTATGATAC
8149823 GAAGAGAATGTTATGAGTATGATA
1 GAAGAGAATGTTATGAGTATGATA
8149847 GCCAGTCAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.41, C:0.02, G:0.29, T:0.29
Consensus pattern (25 bp):
GAAGAGAATGTTATGAGTATGATAC
Found at i:8153124 original size:249 final size:248
Alignment explanation
Indices: 8152699--8153205 Score: 906
Period size: 249 Copynumber: 2.0 Consensus size: 248
8152689 AAACTTTGGC
8152699 CACCCTATATGTGGAAGTGACTAAAAAGGCACTTGAATATTCATTTCAAGGCTTCAAAGTTGTTA
1 CACCCTATATGTGGAAGTGACTAAAAAGGCACTTGAATATTCATTTCAAGGCTTCAAAGTTGTTA
* *
8152764 ATGCCACATATGTAGGAGAAGGCTCAATCATGCCCTCCTTTATTAAAAACTATAGTAATGGTGGT
66 ATGCCACATATGTAGGAGAAGGCTCAATCATACCCTCCTTTATCAAAAACTATAGTAATGGTGGT
* *
8152829 TAGATAGACTACTGAGAAAAGATTGTAGCCAAGACTAGGTCTTGGAGTGGCTTTGAAAGGAATGA
131 TAGATAGACTACTGAGAAAAGATTGTAACCAAGACTAGGTCTTGGAGTGGCTTTGAAAAGAATGA
*
8152894 AAAAGGCACCTAAAATTATGAAAAACAAGGAAGGATTTGGTTTAGGTCATCGA
196 AAAAGGCACATAAAATTATGAAAAACAAGGAAGGATTTGGTTTAGGTCATCGA
*
8152947 CACCTTATATGTGGAAGTGACTAAAAAGGCACTTGAATATTCATTTCAAGGCTTCAAAGTTGTTA
1 CACCCTATATGTGGAAGTGACTAAAAAGGCACTTGAATATTCATTTCAAGGCTTCAAAGTTGTTA
*
8153012 ATGCCACATATGTAGGAGAAGGCTCAATCATACCTCTTCTTTATCAAAAACTATAGTAATGGTGG
66 ATGCCACATATGTAGGAGAAGGCTCAATCATACC-CTCCTTTATCAAAAACTATAGTAATGGTGG
8153077 TTAGATAGACTACTGAGAAAAGATTGTAACCAAGACTAGGTCTTGGAGTGGCTTTGAAAAGAATG
130 TTAGATAGACTACTGAGAAAAGATTGTAACCAAGACTAGGTCTTGGAGTGGCTTTGAAAAGAATG
* *
8153142 AAAAAGGCACATGAAATTATGAAAAACAAGGAAGGATTTGGTTTGGGTCATCGA
195 AAAAAGGCACATAAAATTATGAAAAACAAGGAAGGATTTGGTTTAGGTCATCGA
8153196 CCAACCCTAT
1 -C-ACCCTAT
8153206 TGACAAGAGG
Statistics
Matches: 246, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
248 97 0.39
249 142 0.58
250 1 0.00
251 6 0.02
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (248 bp):
CACCCTATATGTGGAAGTGACTAAAAAGGCACTTGAATATTCATTTCAAGGCTTCAAAGTTGTTA
ATGCCACATATGTAGGAGAAGGCTCAATCATACCCTCCTTTATCAAAAACTATAGTAATGGTGGT
TAGATAGACTACTGAGAAAAGATTGTAACCAAGACTAGGTCTTGGAGTGGCTTTGAAAAGAATGA
AAAAGGCACATAAAATTATGAAAAACAAGGAAGGATTTGGTTTAGGTCATCGA
Found at i:8153668 original size:21 final size:22
Alignment explanation
Indices: 8153623--8153672 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
8153613 TTTCATGACA
* * *
8153623 TATTCTTATTTAACATTTCTTT
1 TATTCTTATTCAACATATCTCT
8153645 TATTCTT-TTCAACATATCTCT
1 TATTCTTATTCAACATATCTCT
8153666 TATTCTT
1 TATTCTT
8153673 GTTAAAATGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.22, C:0.18, G:0.00, T:0.60
Consensus pattern (22 bp):
TATTCTTATTCAACATATCTCT
Found at i:8158878 original size:20 final size:20
Alignment explanation
Indices: 8158834--8158882 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
8158824 TTTTCCTCCT
*
8158834 AAAAATTCCCTTTAAATTAA
1 AAAAATTCCCTTTAAAATAA
8158854 AAAAATTCCCTTTAAAATAGTA
1 AAAAATTCCCTTTAAAATA--A
8158876 AAAAATT
1 AAAAATT
8158883 TCAATCGATC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 18 0.69
22 8 0.31
ACGTcount: A:0.53, C:0.12, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAAATTCCCTTTAAAATAA
Found at i:8164932 original size:59 final size:58
Alignment explanation
Indices: 8164803--8164934 Score: 151
Period size: 59 Copynumber: 2.3 Consensus size: 58
8164793 TTTGCATAAG
* * * * * *
8164803 GAAACTATCAATTTTTTTTAAAATAAAATTTTTCAAAAAATATTTTTGAGGAAAAGTT
1 GAAAGTATCAATTTTGTTAAAAATAAAATTTATCAAAAAACATTTTTAAGGAAAAGTT
*
8164861 GAAAGTACCAATTTTCGTTAAAAATAAAA-TTATCAAGAAAAACATTTTTAAGGAAAAGTT
1 GAAAGTATCAATTTT-GTTAAAAATAAAATTTATC-A-AAAAACATTTTTAAGGAAAAGTT
*
8164921 -TAAGTATCAATTTT
1 GAAAGTATCAATTTT
8164935 TAAAAAAAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
58 17 0.27
59 24 0.39
60 21 0.34
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.37
Consensus pattern (58 bp):
GAAAGTATCAATTTTGTTAAAAATAAAATTTATCAAAAAACATTTTTAAGGAAAAGTT
Found at i:8169942 original size:19 final size:19
Alignment explanation
Indices: 8169906--8169941 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
8169896 ATTTGTGAAA
8169906 GATGAGAAAAAAAGAAAAG
1 GATGAGAAAAAAAGAAAAG
8169925 GATGA-AAAAAAAGAAAA
1 GATGAGAAAAAAAGAAAA
8169942 AAAAAGGAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (19 bp):
GATGAGAAAAAAAGAAAAG
Found at i:8171081 original size:25 final size:25
Alignment explanation
Indices: 8171047--8171110 Score: 119
Period size: 25 Copynumber: 2.6 Consensus size: 25
8171037 TTTGAGTCTT
8171047 AAATGAGAATCTTTAAGACATTTTC
1 AAATGAGAATCTTTAAGACATTTTC
8171072 AAATGAGAATCTTTAAGACATTTTC
1 AAATGAGAATCTTTAAGACATTTTC
*
8171097 AAATTAGAATCTTT
1 AAATGAGAATCTTT
8171111 GAGTTTTGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.38
Consensus pattern (25 bp):
AAATGAGAATCTTTAAGACATTTTC
Found at i:8171148 original size:14 final size:14
Alignment explanation
Indices: 8171129--8171156 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8171119 AATGAGAATA
8171129 TTTAAGATGTTTTC
1 TTTAAGATGTTTTC
8171143 TTTAAGATGTTTTC
1 TTTAAGATGTTTTC
8171157 AAATGAGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.57
Consensus pattern (14 bp):
TTTAAGATGTTTTC
Found at i:8171156 original size:60 final size:60
Alignment explanation
Indices: 8171081--8171289 Score: 292
Period size: 60 Copynumber: 3.5 Consensus size: 60
8171071 CAAATGAGAA
* * * * *
8171081 TCTTTAAGACATTTTCAAATTAGAATCTTTGAGTTTTGAATGAGAATATTTAAGATGTTT
1 TCTTTAAGACATTTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGACGTTT
** * *
8171141 TCTTTAAGATGTTTTCAAATGAGAATCTTTGAGTCTTAAACGAGAATCTTTAAGACATTT
1 TCTTTAAGACATTTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGACGTTT
* * * *
8171201 TCTTTAAGACATTTCCAAATGACAATCTTTGAGTCTTAAATAAAAATCTTTAAGACGTTT
1 TCTTTAAGACATTTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGACGTTT
*
8171261 TCTTTAAGACATTTTCGAATGAGAATCTT
1 TCTTTAAGACATTTTCAAATGAGAATCTT
8171290 CAAATTTCAA
Statistics
Matches: 129, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
60 129 1.00
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.41
Consensus pattern (60 bp):
TCTTTAAGACATTTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGACGTTT
Found at i:8171204 original size:14 final size:14
Alignment explanation
Indices: 8171187--8171214 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8171177 TAAACGAGAA
8171187 TCTTTAAGACATTT
1 TCTTTAAGACATTT
8171201 TCTTTAAGACATTT
1 TCTTTAAGACATTT
8171215 CCAAATGACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.07, T:0.50
Consensus pattern (14 bp):
TCTTTAAGACATTT
Found at i:8171264 original size:14 final size:14
Alignment explanation
Indices: 8171247--8171276 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8171237 TAAATAAAAA
*
8171247 TCTTTAAGACGTTT
1 TCTTTAAGACATTT
8171261 TCTTTAAGACATTT
1 TCTTTAAGACATTT
8171275 TC
1 TC
8171277 GAATGAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.17, G:0.10, T:0.50
Consensus pattern (14 bp):
TCTTTAAGACATTT
Found at i:8171365 original size:20 final size:21
Alignment explanation
Indices: 8171337--8171389 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
8171327 AAATTTGTCG
*
8171337 AATGTGAATCTTCGAA-CTCA
1 AATGAGAATCTTCGAATCTCA
* *
8171357 AATGAGAATCTTTGAATTTCA
1 AATGAGAATCTTCGAATCTCA
*
8171378 AATAAGAATCTT
1 AATGAGAATCTT
8171390 TAAGGTGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (21 bp):
AATGAGAATCTTCGAATCTCA
Found at i:8171366 original size:79 final size:79
Alignment explanation
Indices: 8171278--8171592 Score: 459
Period size: 79 Copynumber: 4.0 Consensus size: 79
8171268 GACATTTTCG
** * *
8171278 AATGAGAATCTTCAAATTTCAAGTGAGAATCTTTGAGGTGTGAAACCCAAAATTTGTCGAATGTG
1 AATGAGAATCTTTGAATTTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATTTGTCGAATGTG
8171343 AATCTTCGAACTCA
66 AATCTTCGAACTCA
* *
8171357 AATGAGAATCTTTGAATTTCAAATAAGAATCTTTAAGGTGTGAAACCTAAAATTTGTCGAATGTG
1 AATGAGAATCTTTGAATTTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATTTGTCGAATGTG
*
8171422 AATCTTCAAACTCA
66 AATCTTCGAACTCA
* * *
8171436 AATGAGAATCTTTGAATTTCAAGTGAGAATCTTTGAGGTGTGAAACCCAAAATTTATCGAATGTG
1 AATGAGAATCTTTGAATTTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATTTGTCGAATGTG
*
8171501 AATCTTCGAATTCA
66 AATCTTCGAACTCA
* * ** * **
8171515 AATGAGAATCTTTTAATTTCAAATAAGAATCTTTGAGATGTGAAACCCTAAAGCTTGTTGGGTGT
1 AATGAGAATCTTTGAATTTCAAATAAGAATCTTTGAGGTGTGAAACCC-AAAATTTGTCGAATGT
8171580 GAATCTTCGAACT
65 GAATCTTCGAACT
8171593 AATGAAAAGT
Statistics
Matches: 210, Mismatches: 25, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
79 188 0.90
80 22 0.10
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (79 bp):
AATGAGAATCTTTGAATTTCAAATAAGAATCTTTGAGGTGTGAAACCCAAAATTTGTCGAATGTG
AATCTTCGAACTCA
Found at i:8171380 original size:21 final size:20
Alignment explanation
Indices: 8171337--8171390 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
8171327 AAATTTGTCG
* *
8171337 AATGTGAATCTTCGAACTCA
1 AATGAGAATCTTTGAACTCA
*
8171357 AATGAGAATCTTTGAATTTCA
1 AATGAGAATCTTTGAA-CTCA
*
8171378 AATAAGAATCTTT
1 AATGAGAATCTTT
8171391 AAGGTGTGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 14 0.48
21 15 0.52
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGAGAATCTTTGAACTCA
Found at i:8171496 original size:158 final size:159
Alignment explanation
Indices: 8171278--8171566 Score: 508
Period size: 158 Copynumber: 1.8 Consensus size: 159
8171268 GACATTTTCG
*
8171278 AATGAGAATCTTCAAATTTCAAGTGAGAATCTTTGAGGTGTGAAACCCAAAATTTGTCGAATGTG
1 AATGAGAATCTTCAAATTTCAAGTGAGAATCTTTGAGGTGTGAAACCCAAAATTTATCGAATGTG
*
8171343 AATCTTCGAACTCAAATGAGAATCTTTGAATTTCAAATAAGAATCTTTAAGGTGTGAAA-CCTAA
66 AATCTTCGAACTCAAATGAGAATCTTTGAATTTCAAATAAGAATCTTTAAGATGTGAAACCCTAA
8171407 AATTTGTCGAATGTGAATCTTCAAACTCA
131 AATTTGTCGAATGTGAATCTTCAAACTCA
**
8171436 AATGAGAATCTTTGAATTTCAAGTGAGAATCTTTGAGGTGTGAAACCCAAAATTTATCGAATGTG
1 AATGAGAATCTTCAAATTTCAAGTGAGAATCTTTGAGGTGTGAAACCCAAAATTTATCGAATGTG
* * *
8171501 AATCTTCGAATTCAAATGAGAATCTTTTAATTTCAAATAAGAATCTTTGAGATGTGAAACCCTAA
66 AATCTTCGAACTCAAATGAGAATCTTTGAATTTCAAATAAGAATCTTTAAGATGTGAAACCCTAA
8171566 A
131 A
8171567 GCTTGTTGGG
Statistics
Matches: 123, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
158 117 0.95
159 6 0.05
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (159 bp):
AATGAGAATCTTCAAATTTCAAGTGAGAATCTTTGAGGTGTGAAACCCAAAATTTATCGAATGTG
AATCTTCGAACTCAAATGAGAATCTTTGAATTTCAAATAAGAATCTTTAAGATGTGAAACCCTAA
AATTTGTCGAATGTGAATCTTCAAACTCA
Found at i:8171523 original size:20 final size:21
Alignment explanation
Indices: 8171495--8171547 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
8171485 AAATTTATCG
*
8171495 AATGTGAATCTTCGAA-TTCA
1 AATGAGAATCTTCGAATTTCA
**
8171515 AATGAGAATCTTTTAATTTCA
1 AATGAGAATCTTCGAATTTCA
*
8171536 AATAAGAATCTT
1 AATGAGAATCTT
8171548 TGAGATGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 13 0.46
21 15 0.54
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (21 bp):
AATGAGAATCTTCGAATTTCA
Found at i:8171716 original size:42 final size:44
Alignment explanation
Indices: 8171655--8171744 Score: 112
Period size: 42 Copynumber: 2.1 Consensus size: 44
8171645 CTTTGAACTC
* * * *
8171655 AACTTGGATGCGAATCTCTAA-ATTT-TTGAGTGAGAACCTTTG
1 AACTTAGATGCGAAACTCTAAGATTTCTTGAATGAGAACATTTG
* *
8171697 AACTTAGATGTGAAACTCTAAGATTTCTTGAATGTGAACATTTG
1 AACTTAGATGCGAAACTCTAAGATTTCTTGAATGAGAACATTTG
8171741 AACT
1 AACT
8171745 CAAACGAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
42 18 0.45
43 4 0.10
44 18 0.45
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (44 bp):
AACTTAGATGCGAAACTCTAAGATTTCTTGAATGAGAACATTTG
Found at i:8172085 original size:44 final size:44
Alignment explanation
Indices: 8172034--8172175 Score: 162
Period size: 44 Copynumber: 3.2 Consensus size: 44
8172024 GAGGAGCCGC
*
8172034 ATTTATTTTGTCAAAGTTGTGGTGCCTCTATTTAGAGGAGCTTA
1 ATTTATTTTGTCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCTTA
* * * * *
8172078 ATTTATTTT-TCAAAAAGTCGTTGAGCCTCTGCTTAGAGGAGC-CA
1 ATTTATTTTGTC--AAAGTTGTGGTGCCTCTGTTTAGAGGAGCTTA
* * *
8172122 TATTTATTTTGTCAAAGTTGTGGTGCTTTTGTTTAGAGAAGCTTA
1 -ATTTATTTTGTCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCTTA
8172167 ATTTATTTT
1 ATTTATTTT
8172176 CCAAAAAGTC
Statistics
Matches: 79, Mismatches: 14, Indels: 10
0.77 0.14 0.10
Matches are distributed among these distances:
43 2 0.03
44 41 0.52
45 34 0.43
46 2 0.03
ACGTcount: A:0.24, C:0.11, G:0.20, T:0.44
Consensus pattern (44 bp):
ATTTATTTTGTCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCTTA
Found at i:8172114 original size:45 final size:46
Alignment explanation
Indices: 8172034--8172227 Score: 143
Period size: 45 Copynumber: 4.3 Consensus size: 46
8172024 GAGGAGCCGC
* * * **
8172034 ATTTATTTTGTC--AAAGTTGTGGTGCCTCTATTTAGAGGAGCTTA
1 ATTTATTTTGTCAAAAAGTCGTCGAGCCTCTGCTTAGAGGAGCTTA
* *
8172078 ATTTATTTT-TCAAAAAGTCGTTGAGCCTCTGCTTAGAGGAGC-CA
1 ATTTATTTTGTCAAAAAGTCGTCGAGCCTCTGCTTAGAGGAGCTTA
* * * * * * *
8172122 TATTTATTTTGTC--AAAGTTGTGGTGCTTTTGTTTAGAGAAGCTTA
1 -ATTTATTTTGTCAAAAAGTCGTCGAGCCTCTGCTTAGAGGAGCTTA
* * * * *
8172167 ATTTATTTT-CCAAAAAGTCATCGAACCTCTACTTAGAGGAGCCGT-
1 ATTTATTTTGTCAAAAAGTCGTCGAGCCTCTGCTTAGAGGAG-CTTA
8172212 ATTTATTTTGTCAAAA
1 ATTTATTTTGTCAAAA
8172228 TTTTGAGCCT
Statistics
Matches: 114, Mismatches: 27, Indels: 16
0.73 0.17 0.10
Matches are distributed among these distances:
43 3 0.03
44 41 0.36
45 61 0.54
46 9 0.08
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (46 bp):
ATTTATTTTGTCAAAAAGTCGTCGAGCCTCTGCTTAGAGGAGCTTA
Found at i:8172173 original size:89 final size:89
Alignment explanation
Indices: 8172022--8172226 Score: 311
Period size: 89 Copynumber: 2.3 Consensus size: 89
8172012 GACATCCTTG
* *
8172022 TAGAGGAGCCGCATTTATTTTGTCAAAGTTGTGGTGCCTCTATTTAGAGGAGCTTAATTTATTTT
1 TAGAGGAGCCGTATTTATTTTGTCAAAGTTGTGGTGCCTCTATTTAGAGAAGCTTAATTTATTTT
* * * * *
8172087 TCAAAAAGTCGTTGAGCCTCTGCT
66 CCAAAAAGTCATCGAACCTCTACT
* * * *
8172111 TAGAGGAGCCATATTTATTTTGTCAAAGTTGTGGTGCTTTTGTTTAGAGAAGCTTAATTTATTTT
1 TAGAGGAGCCGTATTTATTTTGTCAAAGTTGTGGTGCCTCTATTTAGAGAAGCTTAATTTATTTT
8172176 CCAAAAAGTCATCGAACCTCTACT
66 CCAAAAAGTCATCGAACCTCTACT
8172200 TAGAGGAGCCGTATTTATTTTGTCAAA
1 TAGAGGAGCCGTATTTATTTTGTCAAA
8172227 ATTTTGAGCC
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
89 104 1.00
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (89 bp):
TAGAGGAGCCGTATTTATTTTGTCAAAGTTGTGGTGCCTCTATTTAGAGAAGCTTAATTTATTTT
CCAAAAAGTCATCGAACCTCTACT
Found at i:8172546 original size:29 final size:28
Alignment explanation
Indices: 8172499--8172559 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 28
8172489 TTTTTATTCG
* *
8172499 TTTTTATTTCATATTTATC-ATTTTCTTA
1 TTTTTATTTCATATCTATCTATTAT-TTA
*
8172527 TTTTTATTTTATGATCTATCTATTATTTA
1 TTTTTATTTCAT-ATCTATCTATTATTTA
8172556 TTTT
1 TTTT
8172560 CCTTTTCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 11 0.39
29 13 0.46
30 4 0.14
ACGTcount: A:0.21, C:0.08, G:0.02, T:0.69
Consensus pattern (28 bp):
TTTTTATTTCATATCTATCTATTATTTA
Found at i:8174341 original size:60 final size:57
Alignment explanation
Indices: 8174114--8174407 Score: 317
Period size: 58 Copynumber: 5.0 Consensus size: 57
8174104 TAAAAATAAA
*
8174114 AAAAATAAAATCTTC-AAAAATCATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
1 AAAAATAAAAT-TTCAAAAAAT-ATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTT
* * *
8174172 GAAAATAAAATTTTCAAAAAACATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
1 AAAAATAAAA-TTTCAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTT
* * * * *
8174230 GAAAATAAAATGTTCAAAAAATATTTTTAAGAAAAAGTTGGAAGTACCAATTTTTCTT
1 AAAAATAAAAT-TTCAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTT
* *
8174288 AAAAATAAAATTATCAAGAGAAATATTTTTAAGGAAAAGTTTAAGGTATCAATTTTCCTT
1 AAAAATAAAATT-TCAA-A-AAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTT
** *
8174348 AAAAATAAGAA--AGAAACCTTAAA-ATGCTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTT
1 AAAAATAA-AATTTCAAA----AAATAT-TTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTT
8174408 GTACAAAAGC
Statistics
Matches: 204, Mismatches: 21, Indels: 20
0.83 0.09 0.08
Matches are distributed among these distances:
57 3 0.01
58 114 0.56
59 9 0.04
60 76 0.37
61 2 0.01
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.33
Consensus pattern (57 bp):
AAAAATAAAATTTCAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTT
Found at i:8182094 original size:16 final size:15
Alignment explanation
Indices: 8182073--8182102 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8182063 TAATAAAGAA
8182073 ATAAAATATAAAATAT
1 ATAAAATA-AAAATAT
8182089 ATAAAATAAAAATA
1 ATAAAATAAAAATA
8182103 AACCAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
ATAAAATAAAAATAT
Found at i:8182544 original size:23 final size:23
Alignment explanation
Indices: 8182494--8182544 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 23
8182484 AATTTACATG
*
8182494 TAAAAATTTGAAGATTTTCAATC
1 TAAAAATTTGAAGATTTGCAATC
* *
8182517 GAAAAAGTTTGAATATTTGCAA-C
1 TAAAAA-TTTGAAGATTTGCAATC
8182540 TAAAA
1 TAAAA
8182545 GTTAGATATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.47, C:0.08, G:0.12, T:0.33
Consensus pattern (23 bp):
TAAAAATTTGAAGATTTGCAATC
Found at i:8182683 original size:21 final size:23
Alignment explanation
Indices: 8182640--8182684 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 23
8182630 GTTTAAAAAA
*
8182640 TCACAATTGAAATATTTATAGAT
1 TCACAATTGAAATATTTAGAGAT
8182663 TCACAATTG-AA-ATTTAGAGAT
1 TCACAATTGAAATATTTAGAGAT
8182684 T
1 T
8182685 TTGTTCTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 10 0.48
22 2 0.10
23 9 0.43
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (23 bp):
TCACAATTGAAATATTTAGAGAT
Found at i:8182717 original size:66 final size:66
Alignment explanation
Indices: 8182536--8182786 Score: 195
Period size: 66 Copynumber: 3.8 Consensus size: 66
8182526 TGAATATTTG
* * * * * * * * *
8182536 CAACTAAAAGTTAGATATTCTTATCTAAAGATTCAAAGATTCTCATTTG-AAA-TTCAAAGATTT
1 CAACTAAAATTTAGAGATTCTCATCTAAAAATTCAAAAATTCACATTTGAAAATTTTATAGATTC
*
8182599 G
66 A
* * * ** * * *
8182600 CTACTGAAGTTTAGCA-ATTCTCATCTAAAGGTTTAAAAAATCACAATTG-AAATATTTATAGAT
1 CAACTAAAATTTAG-AGATTCTCATCTAAAAATTCAAAAATTCACATTTGAAAAT-TTTATAGAT
8182663 TCA
64 TCA
* * * ** * ** * *
8182666 CAATTGAAATTTAGAGATTTTGTTCTAAAAATTCAAAGATTTGCATTTGAAAATTTTTTATATTC
1 CAACTAAAATTTAGAGATTCTCATCTAAAAATTCAAAAATTCACATTTGAAAATTTTATAGATTC
8182731 A
66 A
*
8182732 CAACTAAAATTTAGAGATTCTCATCTAAATATTCAAAAATTCACATTTGAAAATT
1 CAACTAAAATTTAGAGATTCTCATCTAAAAATTCAAAAATTCACATTTGAAAATT
8182787 CATGTATTCA
Statistics
Matches: 142, Mismatches: 40, Indels: 8
0.75 0.21 0.04
Matches are distributed among these distances:
64 39 0.27
65 2 0.01
66 97 0.68
67 4 0.03
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37
Consensus pattern (66 bp):
CAACTAAAATTTAGAGATTCTCATCTAAAAATTCAAAAATTCACATTTGAAAATTTTATAGATTC
A
Found at i:8182827 original size:65 final size:65
Alignment explanation
Indices: 8182726--8182853 Score: 159
Period size: 65 Copynumber: 2.0 Consensus size: 65
8182716 AAATTTTTTA
* * *
8182726 TATTCACAACTAAAATTTAGAGATTCTCATCTAAATATTCAAAAATTCACATTTG-AAAATTCAT
1 TATTCAAAACTAAAATTTAGAGATTCTCATCAAAATATTC-AAAATTCACACTTGAAAAATTCAT
8182790 G
65 G
* * * * * *
8182791 TATTCAAAACTAATATTTATATATTTTTATCAAAATATTCAAAATTTACACTTGAAAAATTCA
1 TATTCAAAACTAAAATTTAGAGATTCTCATCAAAATATTCAAAATTCACACTTGAAAAATTCA
8182854 AAGATTCGCA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
64 12 0.23
65 41 0.77
ACGTcount: A:0.45, C:0.13, G:0.04, T:0.38
Consensus pattern (65 bp):
TATTCAAAACTAAAATTTAGAGATTCTCATCAAAATATTCAAAATTCACACTTGAAAAATTCATG
Found at i:8182975 original size:23 final size:21
Alignment explanation
Indices: 8182920--8183019 Score: 76
Period size: 21 Copynumber: 4.6 Consensus size: 21
8182910 TTTGTATCTT
* *
8182920 AAATTCAAAAATTCACATTTG
1 AAATTTAAATATTCACATTTG
*
8182941 AAATTTAAATATTCATATTTG
1 AAATTTAAATATTCACATTTG
* * * *
8182962 AAAAGTTTAGATATTCGCATCTA
1 -AAA-TTTAAATATTCACATTTG
* *
8182985 AAATTCAAAGATTCAC-TTTG
1 AAATTTAAATATTCACATTTG
8183005 AAATTTTTAAATATT
1 AAA--TTTAAATATT
8183020 TGTAACTAAA
Statistics
Matches: 59, Mismatches: 16, Indels: 7
0.72 0.20 0.09
Matches are distributed among these distances:
20 5 0.08
21 27 0.46
22 14 0.24
23 13 0.22
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (21 bp):
AAATTTAAATATTCACATTTG
Found at i:8183075 original size:46 final size:44
Alignment explanation
Indices: 8182941--8183092 Score: 144
Period size: 43 Copynumber: 3.4 Consensus size: 44
8182931 TTCACATTTG
* * * ** *
8182941 AAATTTAAATATTCATATTTGAAAAGTTTAGATATTCGCATCTA
1 AAATTAAAAGATTCACATTTGAAAAAATTAGATATTTGCATCTA
* *** * * *
8182985 AAATTCAAAGATTCAC-TTTGAAATTTTTAAATATTTGTAACTA
1 AAATTAAAAGATTCACATTTGAAAAAATTAGATATTTGCATCTA
*
8183028 AAATTAAAAGATTCACATTTGAAAAAAAATTAGAGATTTGCATCTA
1 AAATTAAAAGATTCACATTTG--AAAAAATTAGATATTTGCATCTA
*
8183074 AAATTAAAAAATTCACATT
1 AAATTAAAAGATTCACATT
8183093 GTTAGCTTAA
Statistics
Matches: 87, Mismatches: 18, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
43 36 0.41
44 17 0.20
46 34 0.39
ACGTcount: A:0.46, C:0.09, G:0.08, T:0.37
Consensus pattern (44 bp):
AAATTAAAAGATTCACATTTGAAAAAATTAGATATTTGCATCTA
Found at i:8187222 original size:15 final size:15
Alignment explanation
Indices: 8187202--8187231 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8187192 TATATATAGG
*
8187202 TTAGTATAGATAGTT
1 TTAGTATACATAGTT
8187217 TTAGTATACATAGTT
1 TTAGTATACATAGTT
8187232 ATTATGTTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.03, G:0.17, T:0.47
Consensus pattern (15 bp):
TTAGTATACATAGTT
Found at i:8190634 original size:14 final size:14
Alignment explanation
Indices: 8190615--8190641 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8190605 GTATATAACA
8190615 AATTTCAAGAAAAC
1 AATTTCAAGAAAAC
8190629 AATTTCAAGAAAA
1 AATTTCAAGAAAA
8190642 TATTTTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.11, G:0.07, T:0.22
Consensus pattern (14 bp):
AATTTCAAGAAAAC
Found at i:8200413 original size:37 final size:37
Alignment explanation
Indices: 8200372--8200491 Score: 116
Period size: 37 Copynumber: 3.3 Consensus size: 37
8200362 TTAAATGTAT
* * *
8200372 ATGAGATGGAATGCATATACTATCTTTTAAGATGTGC
1 ATGAGATGGAATGCATGTACTATCTATTAAAATGTGC
* * * * *
8200409 ATGAGATGGAGTGCATGT-CCACCAATTAAAATATGC
1 ATGAGATGGAATGCATGTACTATCTATTAAAATGTGC
* * * *
8200445 ATAAGGTGAAATGCATGTACTATCTATTAACATGTGC
1 ATGAGATGGAATGCATGTACTATCTATTAAAATGTGC
*
8200482 ATGAAATGGA
1 ATGAGATGGA
8200492 GTGTATGTGC
Statistics
Matches: 61, Mismatches: 21, Indels: 2
0.73 0.25 0.02
Matches are distributed among these distances:
36 26 0.43
37 35 0.57
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.30
Consensus pattern (37 bp):
ATGAGATGGAATGCATGTACTATCTATTAAAATGTGC
Found at i:8202630 original size:48 final size:47
Alignment explanation
Indices: 8202574--8202693 Score: 138
Period size: 48 Copynumber: 2.6 Consensus size: 47
8202564 TGTTTTACGA
* *
8202574 TTTA-GTTTAAGGTTAGGGTTAGGGTTTGTTTGAGGTCTAAGTTAGGG
1 TTTAGGTTT-AGGTTAGGGTTAGAGTTAGTTTGAGGTCTAAGTTAGGG
* * * *
8202621 TTTAGGTTTAGCTTAGGTTTTAGAGTTAGTTTGTGGTCTAGGTTAGGG
1 TTTAGGTTTAGGTTAGG-GTTAGAGTTAGTTTGAGGTCTAAGTTAGGG
8202669 TTT-GGTTTAGGTTTAGGGTTA-AGTT
1 TTTAGGTTTAGG-TTAGGGTTAGAGTT
8202694 TTAGGTTATG
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
46 4 0.06
47 21 0.34
48 37 0.60
ACGTcount: A:0.17, C:0.03, G:0.34, T:0.46
Consensus pattern (47 bp):
TTTAGGTTTAGGTTAGGGTTAGAGTTAGTTTGAGGTCTAAGTTAGGG
Found at i:8202674 original size:17 final size:18
Alignment explanation
Indices: 8202654--8202688 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8202644 AGTTAGTTTG
8202654 TGGTCTAGG-TTAGGGTT
1 TGGTCTAGGTTTAGGGTT
*
8202671 TGGTTTAGGTTTAGGGTT
1 TGGTCTAGGTTTAGGGTT
8202689 AAGTTTTAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.11, C:0.03, G:0.40, T:0.46
Consensus pattern (18 bp):
TGGTCTAGGTTTAGGGTT
Found at i:8207120 original size:36 final size:36
Alignment explanation
Indices: 8207078--8207161 Score: 141
Period size: 36 Copynumber: 2.3 Consensus size: 36
8207068 ACAAGGTGTC
* *
8207078 AACATTCATCATACCATGAAGAATTTCATTTCAAGG
1 AACATTCATCATACCATCAAGAATTTCATTTCAAAG
8207114 AACATTCATCATACCATCAAGAATTTCATTTCAAAG
1 AACATTCATCATACCATCAAGAATTTCATTTCAAAG
*
8207150 AGCATTCATCAT
1 AACATTCATCAT
8207162 GCCAAGTTCA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.39, C:0.21, G:0.08, T:0.31
Consensus pattern (36 bp):
AACATTCATCATACCATCAAGAATTTCATTTCAAAG
Found at i:8216606 original size:45 final size:45
Alignment explanation
Indices: 8216549--8216715 Score: 183
Period size: 45 Copynumber: 3.7 Consensus size: 45
8216539 AAGATTTACG
* * *
8216549 TTCACAAG-TTTTAAAGATTCACATCTAAAATTCAATGGTTCCCA
1 TTCAAAAGATTTTAGAGATTCACATCTAAAATTCAAAGGTTCCCA
* * * * *
8216593 TTCGAAAGATTTTAGAGATTCACATTTAAAGTTGAAAGGTTCGCA
1 TTCAAAAGATTTTAGAGATTCACATCTAAAATTCAAAGGTTCCCA
* * * * **
8216638 TTCAAAAAATTTTAGAGATCCACATCCAAATTTCAAAGGTTTTCA
1 TTCAAAAGATTTTAGAGATTCACATCTAAAATTCAAAGGTTCCCA
* *
8216683 TTCAAAAGATTTTAGAGATTCATATTTAAAATT
1 TTCAAAAGATTTTAGAGATTCACATCTAAAATT
8216716 TGAAGGTTAG
Statistics
Matches: 99, Mismatches: 23, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
44 6 0.06
45 93 0.94
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.35
Consensus pattern (45 bp):
TTCAAAAGATTTTAGAGATTCACATCTAAAATTCAAAGGTTCCCA
Found at i:8216735 original size:90 final size:90
Alignment explanation
Indices: 8216557--8216735 Score: 216
Period size: 90 Copynumber: 2.0 Consensus size: 90
8216547 CGTTCACAAG
* * * *
8216557 TTTTAAAGATTCACATCTAAAATTCAATGGTTCCCATTCGAAAGATTTTAGAGATTCACATTTAA
1 TTTTAAAGATCCACATCCAAAATTCAAAGGTTCCCATTCAAAAGATTTTAGAGATTCACATTTAA
* **
8216622 AGTTGAAAGGTTCGCATTCAAAAAA
66 AGTTGAAAGGTTAGCATAAAAAAAA
* * ** *
8216647 TTTTAGAGATCCACATCCAAATTTCAAAGGTTTTCATTCAAAAGATTTTAGAGATTCATATTTAA
1 TTTTAAAGATCCACATCCAAAATTCAAAGGTTCCCATTCAAAAGATTTTAGAGATTCACATTT-A
* *
8216712 AATTTG-AAGGTTAGTATAAAAAAA
65 AAGTTGAAAGGTTAGCATAAAAAAA
8216736 TTATGGAGAT
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
90 68 0.92
91 6 0.08
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (90 bp):
TTTTAAAGATCCACATCCAAAATTCAAAGGTTCCCATTCAAAAGATTTTAGAGATTCACATTTAA
AGTTGAAAGGTTAGCATAAAAAAAA
Found at i:8217521 original size:50 final size:49
Alignment explanation
Indices: 8217392--8217548 Score: 120
Period size: 50 Copynumber: 3.2 Consensus size: 49
8217382 TGAAGCCTTT
* * * * *
8217392 TTTAAGGCA-AAACTTTTTTAAATGAGATTTTCGAAGTTAT-GAAAGCTCTA
1 TTTAAGG-AGAAAC-TTTTTAGATGAAATTTTCAAAATTATAGAGA-CTCTA
* ** * * * *
8217442 ATTAAATAGAAACTTTTTAGATTAAATTTTCAAAATTGTGGAGCCTCTA
1 TTTAAGGAGAAACTTTTTAGATGAAATTTTCAAAATTATAGAGACTCTA
* * * *
8217491 TTTAAGGAGAAACATTTTTGGATGAAATTTTTAAACTTATAGAGACTCTG
1 TTTAAGGAGAAAC-TTTTTAGATGAAATTTTCAAAATTATAGAGACTCTA
8217541 TTTAAGGA
1 TTTAAGGA
8217549 AATTTTTTTT
Statistics
Matches: 82, Mismatches: 22, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
49 36 0.44
50 46 0.56
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (49 bp):
TTTAAGGAGAAACTTTTTAGATGAAATTTTCAAAATTATAGAGACTCTA
Found at i:8217792 original size:48 final size:48
Alignment explanation
Indices: 8217656--8217793 Score: 145
Period size: 50 Copynumber: 2.8 Consensus size: 48
8217646 AAAGCCTTTT
* * * *
8217656 TTTTTTTATGAGATTTTTAAGATTGTGGAGCCTCTGTTTATGGAGTAA
1 TTTTTTTATGATATTTTTAAAATTGTGGAGCCTCTGTTTAAGGAATAA
* * * *
8217704 TTTTTTT-TTATAAGTTTTTTAAATTTGTGGAACCTTTGTTTAAGGAATAA
1 TTTTTTTATGAT-A--TTTTTAAAATTGTGGAGCCTCTGTTTAAGGAATAA
*
8217754 TTTTTTTATGATATTTTTAAAACTT-TGGAGTCTCTGTTTA
1 TTTTTTTATGATATTTTTAAAA-TTGTGGAGCCTCTGTTTA
8217794 GAGAGGAGAT
Statistics
Matches: 72, Mismatches: 13, Indels: 10
0.76 0.14 0.11
Matches are distributed among these distances:
47 2 0.03
48 28 0.39
49 2 0.03
50 37 0.51
51 3 0.04
ACGTcount: A:0.25, C:0.06, G:0.17, T:0.53
Consensus pattern (48 bp):
TTTTTTTATGATATTTTTAAAATTGTGGAGCCTCTGTTTAAGGAATAA
Found at i:8217955 original size:50 final size:51
Alignment explanation
Indices: 8217899--8218020 Score: 128
Period size: 50 Copynumber: 2.5 Consensus size: 51
8217889 AGTGAAGAGT
** * *
8217899 TTTTTTGGATGTCAA-TTTTAAAGTTGTGGAGCCTTTGTTGAA-GAATGAA-
1 TTTTTTGGATGAAAAGTTTTAAAGTTGTAGAGCCTCTGTTGAAGGAA-GAAC
* *
8217948 TTATTTTGGAT-AAAAGTTTTAAAGTTGTAGAGTCTCTGTTTAAGGAAGAAC
1 TT-TTTTGGATGAAAAGTTTTAAAGTTGTAGAGCCTCTGTTGAAGGAAGAAC
*
8217999 TTTTTTGGATG-AAATTTTTAAA
1 TTTTTTGGATGAAAAGTTTTAAA
8218021 ATTGCAGTGC
Statistics
Matches: 61, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
49 4 0.07
50 52 0.85
51 5 0.08
ACGTcount: A:0.30, C:0.05, G:0.21, T:0.43
Consensus pattern (51 bp):
TTTTTTGGATGAAAAGTTTTAAAGTTGTAGAGCCTCTGTTGAAGGAAGAAC
Found at i:8222038 original size:41 final size:41
Alignment explanation
Indices: 8221981--8222064 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
8221971 TGCTTTTGAG
8221981 AAGATTAAAGAGTATTTGACAAACCCACTAGTGTTTGTACC
1 AAGATTAAAGAGTATTTGACAAACCCACTAGTGTTTGTACC
8222022 AAGATTAAAGAGTATTTGACAAACCCACTAGTGTTTGTACC
1 AAGATTAAAGAGTATTTGACAAACCCACTAGTGTTTGTACC
8222063 AA
1 AA
8222065 TCATCGTAGG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (41 bp):
AAGATTAAAGAGTATTTGACAAACCCACTAGTGTTTGTACC
Found at i:8222787 original size:85 final size:85
Alignment explanation
Indices: 8222643--8222813 Score: 288
Period size: 85 Copynumber: 2.0 Consensus size: 85
8222633 TTTTAATTGC
8222643 ACCAACAATGTAACTAAATACAAAACATGTGCCATAGGATTACAAATGGCCATTAAGAAGAAGAT
1 ACCAACAATGTAACTAAATACAAAACATGTGCCATAGGATTACAAATGGCCATTAAGAAGAAGAT
8222708 TGATGTATTGAAAGTATATG
66 TGATGTATTGAAAGTATATG
* * * *
8222728 ACCAATAATGTAACTAAATACAAAGCATGTGCCATGGGATTACAAATGGCCATTGAGAAGAAGAT
1 ACCAACAATGTAACTAAATACAAAACATGTGCCATAGGATTACAAATGGCCATTAAGAAGAAGAT
* *
8222793 TGATGTATTGGAGGTATATG
66 TGATGTATTGAAAGTATATG
8222813 A
1 A
8222814 GGATTCAACC
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 80 1.00
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.25
Consensus pattern (85 bp):
ACCAACAATGTAACTAAATACAAAACATGTGCCATAGGATTACAAATGGCCATTAAGAAGAAGAT
TGATGTATTGAAAGTATATG
Found at i:8224383 original size:18 final size:18
Alignment explanation
Indices: 8224361--8224424 Score: 64
Period size: 18 Copynumber: 3.6 Consensus size: 18
8224351 AAAATTACCA
*
8224361 AAAAAAGAGGAAAAAATAG
1 AAAAAAG-GAAAAAAATAG
8224380 AAAAAAGGAAAAAAATAG
1 AAAAAAGGAAAAAAATAG
8224398 AAAGAAA--AAAGAAAAT--
1 AAA-AAAGGAAA-AAAATAG
8224414 AAAAAAGGAAA
1 AAAAAAGGAAA
8224425 GATTCAAACT
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
15 3 0.08
16 3 0.08
17 6 0.15
18 18 0.45
19 10 0.25
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (18 bp):
AAAAAAGGAAAAAAATAG
Found at i:8225459 original size:35 final size:35
Alignment explanation
Indices: 8225384--8225499 Score: 97
Period size: 35 Copynumber: 3.3 Consensus size: 35
8225374 TTCATCAAAG
* ** * * * *
8225384 TCATCTTTATTTTCTGACTTGTGGCTTCGTCCTAG
1 TCATCTTTATTTTCTAACTTAAGACTTCATCCCAA
* * ** * *
8225419 CCATCTTTATTTTTTGGCTTACGACTTCATCCCAT
1 TCATCTTTATTTTCTAACTTAAGACTTCATCCCAA
**
8225454 TCATCTTTATTTTCTAACTTAAGGTTTCATCCCAA
1 TCATCTTTATTTTCTAACTTAAGACTTCATCCCAA
8225489 TCATCTTTATT
1 TCATCTTTATT
8225500 CCTTGACTTG
Statistics
Matches: 64, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
35 64 1.00
ACGTcount: A:0.18, C:0.24, G:0.09, T:0.48
Consensus pattern (35 bp):
TCATCTTTATTTTCTAACTTAAGACTTCATCCCAA
Found at i:8225638 original size:35 final size:34
Alignment explanation
Indices: 8225555--8226173 Score: 288
Period size: 35 Copynumber: 17.7 Consensus size: 34
8225545 ATTTTGTCCT
* * * *
8225555 AGTCATCTTTATTTTCTAACTTGTAGTTTCATCCC
1 AGTCATCTTTATTTT-TGACTTGCAGCTTCATCTC
** *
8225590 AGTC-TGCACTATTTTATGACTGGCAGCTTCATCTC
1 AGTCAT-CTTTATTTT-TGACTTGCAGCTTCATCTC
* *** * *
8225625 AGTCATCTTTATTTTCTAACTTATGGCTTTATTTC
1 AGTCATCTTTATTTT-TGACTTGCAGCTTCATCTC
* ** *
8225660 -GATCCTCTTTATTTCTTGACTTGTGGTTTCATCTC
1 AG-TCATCTTTATTT-TTGACTTGCAGCTTCATCTC
* * * * *
8225695 AATCATCTTTATTCCTTGACTTGCGGCTTCGTCTT
1 AGTCATCTTTATT-TTTGACTTGCAGCTTCATCTC
* * *
8225730 GGTCATCTTTGATTTTTTTACTTGC-GACTTCATCCC
1 AGTCATCTTT-A-TTTTTGACTTGCAG-CTTCATCTC
* * *
8225766 AGTCATGTCTATTTTCTGACTTGTAGCTTCATCTC
1 AGTCATCTTTATTTT-TGACTTGCAGCTTCATCTC
* * * * *
8225801 GGTCATCTTTATTCCTTT-ACTTACGGTTTCATCCC
1 AGTCATCTTTATT--TTTGACTTGCAGCTTCATCTC
* * *
8225836 AATCATCTTTATTCCTTT-ACTTGC-GATTTCATCCC
1 AGTCATCTTTATT--TTTGACTTGCAG-CTTCATCTC
* ** * *
8225871 AATCATCTTTATTTTCTGACTTGTGGTTTCATCCC
1 AGTCATCTTTATTTT-TGACTTGCAGCTTCATCTC
* * *
8225906 AATCATCTTTACTTTTTGACATGCAGTTTCATC-C
1 AGTCATCTTTA-TTTTTGACTTGCAGCTTCATCTC
* * * *
8225940 TAGTCGTATTTATTTCTTAACTTGCAGCTTTATC-C
1 -AGTCATCTTTATTT-TTGACTTGCAGCTTCATCTC
* *
8225975 TAGTCATCTTTATTTTTTGACTTGCAGTTTCATTTC
1 -AGTCATCTTTA-TTTTTGACTTGCAGCTTCATCTC
* * * * *
8226011 ATTCATTTTTATTTTCTAACTTGCATCTTCATCTT
1 AGTCATCTTTATTTT-TGACTTGCAGCTTCATCTC
* * * *
8226046 AGTCATTTTTATTTTCTAACTTAC-GACTTTATC-C
1 AGTCATCTTTATTTT-TGACTTGCAG-CTTCATCTC
*
8226080 AAGTCATCTTTATTTTTGACTTGCAGTTTCATC-C
1 -AGTCATCTTTATTTTTGACTTGCAGCTTCATCTC
* * * **
8226114 TAGTCACCTTTATTCCTTAACTTGTGGCTTCATCTC
1 -AGTCATCTTTATT-TTTGACTTGCAGCTTCATCTC
* * *
8226150 AATCATTTTTATTTTCTAACTTGC
1 AGTCATCTTTATTTT-TGACTTGC
8226174 GATTCAATTC
Statistics
Matches: 454, Mismatches: 101, Indels: 58
0.74 0.16 0.09
Matches are distributed among these distances:
33 2 0.00
34 41 0.09
35 371 0.82
36 36 0.08
37 4 0.01
ACGTcount: A:0.18, C:0.23, G:0.11, T:0.48
Consensus pattern (34 bp):
AGTCATCTTTATTTTTGACTTGCAGCTTCATCTC
Found at i:8225877 original size:141 final size:140
Alignment explanation
Indices: 8225616--8226179 Score: 336
Period size: 140 Copynumber: 4.0 Consensus size: 140
8225606 TGACTGGCAG
* * * * * * *
8225616 CTTCATCTCAGTCATCTTTATTTTCTAACTTATGGCTTTATTTCGATCCTCTTTATTTCTTGACT
1 CTTCATCCCAGTCATCTCTATTTTCTAACTTATAGCTTCATCTCGATCATCTTTATTCCTTGACT
** * * * ****
8225681 TGTGGTTTCATCTCAATCATCTTTATTCCTTGACTTGCGGCTTCGTCTTGGTCATCTTTGATTTT
66 TACGGTTTCATCCCAATCATCTTTATTCCTTGACTTGCGACTTCATCCCAATCATCTTT-ATTTT
8225746 TTTACTTGCGA
130 TTTACTTGCGA
* * * * *
8225757 CTTCATCCCAGTCATGTCTATTTTCTGACTTGTAGCTTCATCTCGGTCATCTTTATTCCTTTACT
1 CTTCATCCCAGTCATCTCTATTTTCTAACTTATAGCTTCATCTCGATCATCTTTATTCCTTGACT
* * *
8225822 TACGGTTTCATCCCAATCATCTTTATTCCTTTACTTGCGATTTCATCCCAATCATCTTTATTTTC
66 TACGGTTTCATCCCAATCATCTTTATTCCTTGACTTGCGACTTCATCCCAATCATCTTTATTTTT
* * *
8225887 TGACTTGTGG
131 TTACTTGCGA
* * * * * ** * * * * * *
8225897 TTTCATCCCAATCATCTTTACTTTT-TGACATGCAGTTTCATC-CTAGTCGTATTTATTTCTTAA
1 CTTCATCCCAGTCATCTCTA-TTTTCTAACTTATAGCTTCATCTCGA-TCATCTTTATTCCTTGA
* * * * ** * ** * *
8225960 CTTGCAGCTTT-ATCCTAGTCATCTTTATTTTTTGACTTGC-AGTTTCATTTCATTCATTTTTAT
64 CTTAC-GGTTTCATCCCAATCATCTTTATTCCTTGACTTGCGA-CTTCATCCCAATCATCTTTAT
* *
8226023 TTTCTAACTTGC-A
127 TTTTTTACTTGCGA
** * * * * * *
8226036 TCTTCATCTTAGTCATTTTTATTTTCTAACTTA-CGACTTTATC-CAAGTCATCTTTATT-TTTG
1 -CTTCATCCCAGTCATCTCTATTTTCTAACTTATAG-CTTCATCTCGA-TCATCTTTATTCCTTG
* * * * * * * * * *
8226098 ACTTGCAGTTTCATCCTAGTCACCTTTATTCCTTAACTTGTGGCTTCATCTCAATCATTTTTATT
63 ACTTACGGTTTCATCCCAATCATCTTTATTCCTTGACTTGCGACTTCATCCCAATCATCTTTATT
* *
8226163 TTCTAACTTGCGA
128 TTTTTACTTGCGA
8226176 -TTCA
1 CTTCA
8226180 ATTCTGATAA
Statistics
Matches: 332, Mismatches: 81, Indels: 23
0.76 0.19 0.05
Matches are distributed among these distances:
138 7 0.02
139 69 0.21
140 147 0.44
141 109 0.33
ACGTcount: A:0.18, C:0.23, G:0.10, T:0.49
Consensus pattern (140 bp):
CTTCATCCCAGTCATCTCTATTTTCTAACTTATAGCTTCATCTCGATCATCTTTATTCCTTGACT
TACGGTTTCATCCCAATCATCTTTATTCCTTGACTTGCGACTTCATCCCAATCATCTTTATTTTT
TTACTTGCGA
Found at i:8225914 original size:176 final size:175
Alignment explanation
Indices: 8225443--8225921 Score: 472
Period size: 176 Copynumber: 2.7 Consensus size: 175
8225433 TGGCTTACGA
* *
8225443 CTTCATCCCATTCATCTTTATTTTCTAACTTAAGGTTTCATCCCAATCATCTTTATTCCTTGACT
1 CTTCATCTCAGTCATCTTTATTTTCTAACTTAAGGTTTCATCCCAATCATCTTTATTCCTTGACT
* * * * * ** *
8225508 TGTGGCTTT-GTCCCAATCATTTTTATTTTTTGA-TT-TAATTTTGTCCTAGTCATCTTTATTTT
66 TG-CGATTTCATCCCAATCATCTTTATTTTCTGACTTGTGGTTTCGTCCTAGTCATCTTTATTTT
* *
8225570 CTAACTTGTAGTTTCATCCCAGTCTGCACTATTTTATGACTGGCAG
130 CTAACTTGGAGCTTCATCCCAGTCTGCACTATTTTATGACTGGCAG
* ** * * *
8225616 CTTCATCTCAGTCATCTTTATTTTCTAACTTATGGCTTT-ATTTCGATCCTCTTTATTTCTTGAC
1 CTTCATCTCAGTCATCTTTATTTTCTAACTTAAGG-TTTCATCCCAATCATCTTTATTCCTTGAC
* * * * * * * *
8225680 TTGTGGTTTCATCTCAATCATCTTTA-TTCCTTGACTTGCGGCTTCGTCTTGGTCATCTTTGATT
65 TTGCGATTTCATCCCAATCATCTTTATTTTC-TGACTTGTGGTTTCGTCCTAGTCATCTTT-ATT
* * * * * *
8225744 TTTTTACTTGCGA-CTTCATCCCAGTCATG-TCTATTTTCTGACTTGTAG
128 TTCTAACTTG-GAGCTTCATCCCAGTC-TGCACTATTTTATGACTGGCAG
* * *
8225792 CTTCATCTCGGTCATCTTTATTCCTT-T-ACTTACGGTTTCATCCCAATCATCTTTATTCCTTTA
1 CTTCATCTCAGTCATCTTTATT--TTCTAACTTAAGGTTTCATCCCAATCATCTTTATTCCTTGA
* * *
8225855 CTTGCGATTTCATCCCAATCATCTTTATTTTCTGACTTGTGGTTTCATCCCAATCATCTTTACTT
64 CTTGCGATTTCATCCCAATCATCTTTATTTTCTGACTTGTGGTTTCGTCCTAGTCATCTTTA-TT
8225920 TT
128 TT
8225922 TGACATGCAG
Statistics
Matches: 244, Mismatches: 49, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
172 6 0.02
173 71 0.29
174 5 0.02
175 19 0.08
176 134 0.55
177 7 0.03
178 2 0.01
ACGTcount: A:0.18, C:0.24, G:0.11, T:0.48
Consensus pattern (175 bp):
CTTCATCTCAGTCATCTTTATTTTCTAACTTAAGGTTTCATCCCAATCATCTTTATTCCTTGACT
TGCGATTTCATCCCAATCATCTTTATTTTCTGACTTGTGGTTTCGTCCTAGTCATCTTTATTTTC
TAACTTGGAGCTTCATCCCAGTCTGCACTATTTTATGACTGGCAG
Found at i:8225935 original size:105 final size:105
Alignment explanation
Indices: 8225342--8226177 Score: 443
Period size: 105 Copynumber: 8.0 Consensus size: 105
8225332 CTGTGGTTTT
* * *
8225342 ATCCCAGTCAT-TTGTA-TTTCTTGACTTTTGGTTTCATC-AAAGTCATCTTTATT-TTCTGACT
1 ATCCCAGTCATCTT-TATTTTC-TGACTTGTAGTTTCATCTCAA-TCATCTTTATTCTT-TGACT
* * * * * * *
8225403 TGTGGCTTCGTCCTAGCCATCTTTATTT-TTTGGCTTACGACTTC
62 TGCGGTTTCATCCTAGTCATCTTTATTTCTTT-ACTTGCGATTTC
* * * * * *
8225447 ATCCCATTCATCTTTATTTTCTAACTT-AAGGTTTCATCCCAATCATCTTTATTCCTTGACTTGT
1 ATCCCAGTCATCTTTATTTTCTGACTTGTA-GTTTCATCTCAATCATCTTTATTCTTTGACTTGC
* * * * ** *
8225511 GGCTTT-GTCCCAATCATTTTTATTT-TTTGA-TT-TAATTTT
65 GG-TTTCATCCTAGTCATCTTTATTTCTTT-ACTTGCGATTTC
* * * * * ** *
8225550 GTCCTAGTCATCTTTATTTTCTAACTTGTAGTTTCATCCCAGTC-TGCACTATT-TTATGACTGG
1 ATCCCAGTCATCTTTATTTTCTGACTTGTAGTTTCATCTCAATCAT-CTTTATTCTT-TGACTTG
* * * *
8225613 CAGCTTCAT-CTCAGTCATCTTTATTT-TCTAACTTATG-GCTTT-
64 CGGTTTCATCCT-AGTCATCTTTATTTCT-TTAC-T-TGCGATTTC
** * * *
8225655 ATTTC-GATCCTCTTTA-TTTCTTGACTTGTGGTTTCATCTCAATCATCTTTATTCCTTGACTTG
1 ATCCCAG-TCATCTTTATTTTC-TGACTTGTAGTTTCATCTCAATCATCTTTATTCTTTGACTTG
* * * * * *
8225718 CGGCTTCGTCTTGGTCATCTTTGATTTTTTTACTTGCGACTTC
64 CGGTTTCATCCTAGTCATCTTT-ATTTCTTTACTTGCGATTTC
* * * ** *
8225761 ATCCCAGTCATGTCTATTTTCTGACTTGTAGCTTCATCTCGGTCATCTTTATTCCTTT-ACTTAC
1 ATCCCAGTCATCTTTATTTTCTGACTTGTAGTTTCATCTCAATCATCTTTATT-CTTTGACTTGC
* * *
8225825 GGTTTCATCCCAATCATCTTTATTCCTTTACTTGCGATTTC
65 GGTTTCATCCTAGTCATCTTTATTTCTTTACTTGCGATTTC
* * * *
8225866 ATCCCAATCATCTTTATTTTCTGACTTGTGGTTTCATCCCAATCATCTTTACTT-TTTGACATGC
1 ATCCCAGTCATCTTTATTTTCTGACTTGTAGTTTCATCTCAATCATCTTTA-TTCTTTGACTTGC
* * * * *
8225930 AGTTTCATCCTAGTCGTATTTATTTCTTAACTTGCAGCTTT-
65 GGTTTCATCCTAGTCATCTTTATTTCTTTACTTGC-GATTTC
* * * * * * *
8225971 ATCCTAGTCATCTTTATTTTTTGACTTGCAGTTTCATTTCATTCATTTTTATT-TTCTAACTTGC
1 ATCCCAGTCATCTTTATTTTCTGACTTGTAGTTTCATCTCAATCATCTTTATTCTT-TGACTTGC
* * * * *
8226035 -ATCTTCATCTTAGTCATTTTTATTT-TCTAACTTACGACTTT-
65 GGT-TTCATCCTAGTCATCTTTATTTCT-TTACTTGCGA-TTTC
* * * * * * *
8226076 ATCCAAGTCATCTTTATTTT-TGACTTGCAGTTTCATC-CTAGTCACCTTTATTCCTTAACTTGT
1 ATCCCAGTCATCTTTATTTTCTGACTTGTAGTTTCATCTC-AATCATCTTTATTCTTTGACTTGC
* * * *
8226139 GGCTTCAT-CTCAATCATTTTTATTT-TCTAACTTGCGATT
65 GGTTTCATCCT-AGTCATCTTTATTTCT-TTACTTGCGATT
8226178 CAATTCTGAT
Statistics
Matches: 570, Mismatches: 122, Indels: 80
0.74 0.16 0.10
Matches are distributed among these distances:
102 5 0.01
103 71 0.12
104 83 0.15
105 314 0.55
106 88 0.15
107 9 0.02
ACGTcount: A:0.18, C:0.22, G:0.11, T:0.49
Consensus pattern (105 bp):
ATCCCAGTCATCTTTATTTTCTGACTTGTAGTTTCATCTCAATCATCTTTATTCTTTGACTTGCG
GTTTCATCCTAGTCATCTTTATTTCTTTACTTGCGATTTC
Found at i:8227807 original size:3 final size:3
Alignment explanation
Indices: 8227799--8227858 Score: 111
Period size: 3 Copynumber: 20.0 Consensus size: 3
8227789 TTGATTAGAA
*
8227799 AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8227847 AAT AAT AAT AAT
1 AAT AAT AAT AAT
8227859 TTTATCTTTA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8228243 original size:13 final size:13
Alignment explanation
Indices: 8228196--8228245 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
8228186 CCTAAATTAA
* *
8228196 AACCCCAAATCGA
1 AACCCTAAATCGG
*
8228209 AACCCTAAATTGG
1 AACCCTAAATCGG
8228222 AATCCCTAAATCGG
1 AA-CCCTAAATCGG
*
8228236 GACCCTAAAT
1 AACCCTAAAT
8228246 GCAACCTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
13 20 0.65
14 11 0.35
ACGTcount: A:0.40, C:0.30, G:0.12, T:0.18
Consensus pattern (13 bp):
AACCCTAAATCGG
Found at i:8239991 original size:11 final size:10
Alignment explanation
Indices: 8239935--8239994 Score: 52
Period size: 10 Copynumber: 6.0 Consensus size: 10
8239925 TAAAGAAAAG
8239935 AATGATTCTT
1 AATGATTCTT
** *
8239945 GGTAATTCTT
1 AATGATTCTT
*
8239955 AAAGATTCTTT
1 AATGATTC-TT
8239966 AA-G-TTCTT
1 AATGATTCTT
8239974 AATGATTCTT
1 AATGATTCTT
8239984 AGATGATTCTT
1 A-ATGATTCTT
8239995 GATCATATTC
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
8 4 0.10
9 4 0.10
10 18 0.46
11 13 0.33
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.48
Consensus pattern (10 bp):
AATGATTCTT
Found at i:8241322 original size:14 final size:15
Alignment explanation
Indices: 8241288--8241324 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
8241278 AATTTAGCTG
*
8241288 CAATTGTTTTTATTT
1 CAATTTTTTTTATTT
8241303 CAATTTTTTTTATTT
1 CAATTTTTTTTATTT
8241318 C-ATTTTT
1 CAATTTTT
8241325 AGGGTAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 6 0.29
15 15 0.71
ACGTcount: A:0.19, C:0.08, G:0.03, T:0.70
Consensus pattern (15 bp):
CAATTTTTTTTATTT
Found at i:8243548 original size:15 final size:15
Alignment explanation
Indices: 8243528--8243566 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
8243518 GTTGTTTATC
*
8243528 AAAGTCAGGGATAAG
1 AAAGTCACGGATAAG
8243543 AAAGTCACGGATAAG
1 AAAGTCACGGATAAG
8243558 AAAGTCACG
1 AAAGTCACG
8243567 TTTAATGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.46, C:0.13, G:0.28, T:0.13
Consensus pattern (15 bp):
AAAGTCACGGATAAG
Found at i:8245525 original size:143 final size:143
Alignment explanation
Indices: 8245180--8245535 Score: 355
Period size: 143 Copynumber: 2.5 Consensus size: 143
8245170 TCACACTTCT
* * * * * * * *
8245180 AAAAGGGTATAATTACCAAAATACCTTTAAGAGTATTTTCGTGATTTGAC-TTTCCTGAGGTCAA
1 AAAAGGATAAAATTACTAAAATGCCTTTAAGGGTATTTTTGTAATTTGACATTTCC-AAGGTCAA
* * * *
8245244 TTTTTCATGAAAAACTCCATATCATATTTTAATATTATTTCATGATTTTTGATACATTAAAAACC
65 CTTTTCATGAAAAACTCCAGATCATATTTCAATATTATTTCATGAATTTTGATACATTAAAAACC
*
8245309 CTAATTACACCTTA
130 CTAATCACACCTTA
*
8245323 AAAAGGTTAAAATTA-TCAAAATGCCCTTTAAGGGTA-TTTTGTAATTTG--ATTTCTTCAAGGT
1 AAAAGGATAAAATTACT-AAAATG-CCTTTAAGGGTATTTTTGTAATTTGACATTTC--CAAGGT
* * * ** * * *
8245384 TAGCTTTTCTTGAAATGCTCCAGATCATGTTTCAATATTATTTTCATGAATTTTGGTGCATTAAA
62 CAACTTTTCATGAAAAACTCCAGATCATATTTCAATATTA-TTTCATGAATTTTGATACATTAAA
* * ** *
8245449 AATCCTTATCGTA-CTTG
126 AACCCTAATCACACCTTA
*
8245466 AAAAGGATGAAATTACTAAAATGCCTTTAAGGGTATTTTTGTAATTTGACATTTCCAAGGTCAAT
1 AAAAGGATAAAATTACTAAAATGCCTTTAAGGGTATTTTTGTAATTTGACATTTCCAAGGTCAA-
8245531 CTTTT
65 CTTTT
8245536 GCAAAAATCC
Statistics
Matches: 172, Mismatches: 30, Indels: 21
0.77 0.13 0.09
Matches are distributed among these distances:
142 16 0.09
143 104 0.60
144 47 0.27
145 5 0.03
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40
Consensus pattern (143 bp):
AAAAGGATAAAATTACTAAAATGCCTTTAAGGGTATTTTTGTAATTTGACATTTCCAAGGTCAAC
TTTTCATGAAAAACTCCAGATCATATTTCAATATTATTTCATGAATTTTGATACATTAAAAACCC
TAATCACACCTTA
Found at i:8250667 original size:50 final size:50
Alignment explanation
Indices: 8250566--8250688 Score: 133
Period size: 50 Copynumber: 2.5 Consensus size: 50
8250556 GCACTGCAAT
* *
8250566 TTTAAAAATTTCATCCAAAAAAATTCTTCCCTAAACAGAGACTCTACAAC
1 TTTAAAAATTTCATCCAAAAAAATTCTTCCCTAAACAAAGACTCCACAAC
* * * * * *
8250616 TTTAAAAATTTTATCCAAAATAATTCATT-CTTCAACAAAGGCTCCATAAC
1 TTTAAAAATTTCATCCAAAAAAATTC-TTCCCTAAACAAAGACTCCACAAC
*
8250666 TTT-AAAATTGACATCCAAAAAAA
1 TTTAAAAATT-TCATCCAAAAAAA
8250689 CTTTTCACTA
Statistics
Matches: 60, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
49 6 0.10
50 52 0.87
51 2 0.03
ACGTcount: A:0.46, C:0.20, G:0.04, T:0.30
Consensus pattern (50 bp):
TTTAAAAATTTCATCCAAAAAAATTCTTCCCTAAACAAAGACTCCACAAC
Found at i:8250899 original size:49 final size:49
Alignment explanation
Indices: 8250818--8250935 Score: 134
Period size: 49 Copynumber: 2.4 Consensus size: 49
8250808 CTCCAAAGTT
* * *
8250818 TTAAAAATA-TCAT-AAAAAAATTATTCCTTAAACAAAGGTTCCACAA-C
1 TTAAAAA-ACTCATAAAAAAAATTACTCCATAAACAAAGGCTCCACAATC
* *
8250865 TTTAAAAAACTTATAAAAAAAATTACTCCATAAACAGAGGCTCCACAATC
1 -TTAAAAAACTCATAAAAAAAATTACTCCATAAACAAAGGCTCCACAATC
* *
8250915 TTAAAAATCTCATAAAGAAAA
1 TTAAAAAACTCATAAAAAAAA
8250936 GGCTTTTACT
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
47 1 0.02
48 10 0.17
49 47 0.80
50 1 0.02
ACGTcount: A:0.53, C:0.17, G:0.05, T:0.25
Consensus pattern (49 bp):
TTAAAAAACTCATAAAAAAAATTACTCCATAAACAAAGGCTCCACAATC
Found at i:8251921 original size:45 final size:45
Alignment explanation
Indices: 8251863--8252031 Score: 167
Period size: 45 Copynumber: 3.8 Consensus size: 45
8251853 TTTTTTATAC
** *
8251863 AAACCTTCAAATTTTAAATATGAATCTCTAAAATCTTTTGAATGA
1 AAACCTTTGAATTTTAAATGTGAATCTCTAAAATCTTTTGAATGA
** ** * *
8251908 AAACCTTTGAATTTTGGATGTGGGTCTCTAAAATTTTTTGAATGC
1 AAACCTTTGAATTTTAAATGTGAATCTCTAAAATCTTTTGAATGA
* * * * * *
8251953 GAACCTTTCAACTTTAAATGTGAATCTCTAAAATCTTTGGTATGG
1 AAACCTTTGAATTTTAAATGTGAATCTCTAAAATCTTTTGAATGA
* * * *
8251998 GAACCATTGAATTTTAGATGTGAATCTTTAAAAT
1 AAACCTTTGAATTTTAAATGTGAATCTCTAAAAT
8252032 TTGTGAACGT
Statistics
Matches: 99, Mismatches: 25, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 99 1.00
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.39
Consensus pattern (45 bp):
AAACCTTTGAATTTTAAATGTGAATCTCTAAAATCTTTTGAATGA
Found at i:8265870 original size:19 final size:19
Alignment explanation
Indices: 8265846--8265900 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 19
8265836 TTAGGCCCAT
* *
8265846 AACCTAAAACTTAACCCTA
1 AACCTAAAACCTAAACCTA
*
8265865 AACCTAAATCCTAAACCTA
1 AACCTAAAACCTAAACCTA
*
8265884 AACC-AAACCCT-AACCTA
1 AACCTAAAACCTAAACCTA
8265901 GACCACAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 6 0.19
18 6 0.19
19 20 0.62
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.18
Consensus pattern (19 bp):
AACCTAAAACCTAAACCTA
Found at i:8265877 original size:13 final size:13
Alignment explanation
Indices: 8265861--8265885 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8265851 AAAACTTAAC
8265861 CCTAAACCTAAAT
1 CCTAAACCTAAAT
8265874 CCTAAACCTAAA
1 CCTAAACCTAAA
8265886 CCAAACCCTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (13 bp):
CCTAAACCTAAAT
Done.