Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 59 of 129
Found at i:8846996 original size:22 final size:22
Alignment explanation
Indices: 8846971--8847015 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
8846961 TGTTTGGTAA
8846971 ATTAACCTTTTATTAGAAATGT
1 ATTAACCTTTTATTAGAAATGT
*
8846993 ATTAACGTTTTATTAGAAATGT
1 ATTAACCTTTTATTAGAAATGT
8847015 A
1 A
8847016 ATGCAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.07, G:0.11, T:0.44
Consensus pattern (22 bp):
ATTAACCTTTTATTAGAAATGT
Found at i:8847567 original size:29 final size:30
Alignment explanation
Indices: 8847529--8847588 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
8847519 AAATTATAGT
8847529 AAAATATTTAATATAATATTTAAATT-TTA
1 AAAATATTTAATATAATATTTAAATTATTA
* *
8847558 AAAATTTTTAATATGATATTTAAATTATTA
1 AAAATATTTAATATAATATTTAAATTATTA
8847588 A
1 A
8847589 TTTATTAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 24 0.86
30 4 0.14
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (30 bp):
AAAATATTTAATATAATATTTAAATTATTA
Found at i:8847725 original size:29 final size:27
Alignment explanation
Indices: 8847693--8847746 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 27
8847683 AAATTTATTT
*
8847693 TTTAATTATCATATTAAAAATTTTTAAAA
1 TTTAAATATCATATT--AAATTTTTAAAA
*
8847722 TTTAAATATTATATTAAATTTTTAA
1 TTTAAATATCATATTAAATTTTTAA
8847747 TATAATTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 10 0.43
29 13 0.57
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (27 bp):
TTTAAATATCATATTAAATTTTTAAAA
Found at i:8847756 original size:18 final size:18
Alignment explanation
Indices: 8847715--8847758 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
8847705 ATTAAAAATT
* *
8847715 TTTAAAATTTAAATATTA
1 TTTAAATTTTAAATATAA
*
8847733 TATTAAATTTTTAATATAA
1 T-TTAAATTTTAAATATAA
8847752 TTTAAAT
1 TTTAAAT
8847759 GGTGTTTGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
TTTAAATTTTAAATATAA
Found at i:8851141 original size:44 final size:44
Alignment explanation
Indices: 8851078--8851165 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
8851068 CAAAAGAATT
8851078 ATGTACATTACTGTGATACAAAAGTAAGAATAGTAAGTGGGAAG
1 ATGTACATTACTGTGATACAAAAGTAAGAATAGTAAGTGGGAAG
8851122 ATGTACATTACTGTGATACAAAAGTAAGAATAGTAAGTGGGAAG
1 ATGTACATTACTGTGATACAAAAGTAAGAATAGTAAGTGGGAAG
8851166 TGAATACATC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.43, C:0.07, G:0.25, T:0.25
Consensus pattern (44 bp):
ATGTACATTACTGTGATACAAAAGTAAGAATAGTAAGTGGGAAG
Found at i:8852905 original size:2 final size:2
Alignment explanation
Indices: 8852898--8852927 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8852888 TATTATTTTG
*
8852898 TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8852928 GTTGGTGAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:8854000 original size:13 final size:13
Alignment explanation
Indices: 8853996--8854021 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8853986 TTTATTTCTA
8853996 AATTTTATATTAT
1 AATTTTATATTAT
8854009 AATTTTATATTAT
1 AATTTTATATTAT
8854022 TTAATTACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
AATTTTATATTAT
Found at i:8857232 original size:24 final size:25
Alignment explanation
Indices: 8857191--8857237 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
8857181 TTATATAAGC
*
8857191 TGCCAATTGATATAAAACAAATATA
1 TGCCAATTAATATAAAACAAATATA
* *
8857216 TGCCAA-TAATATTAAACCAATA
1 TGCCAATTAATATAAAACAAATA
8857238 CCCAATCTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 13 0.68
25 6 0.32
ACGTcount: A:0.51, C:0.15, G:0.06, T:0.28
Consensus pattern (25 bp):
TGCCAATTAATATAAAACAAATATA
Found at i:8858558 original size:21 final size:23
Alignment explanation
Indices: 8858502--8858581 Score: 71
Period size: 23 Copynumber: 3.6 Consensus size: 23
8858492 AACATCCTGC
*
8858502 TATAATAAA-TAATGAAATATAAG
1 TATAATAAACAAAT-AAATATAAG
* *
8858525 TATTAA-AACCAAAT-CA-ATAAG
1 TA-TAATAAACAAATAAATATAAG
8858546 TATAATAAACAAATAAATATTAAG
1 TATAATAAACAAATAAATA-TAAG
8858570 TA-AATAAACAAA
1 TATAATAAACAAA
8858582 ATTATACTTC
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
20 3 0.07
21 14 0.30
22 2 0.04
23 15 0.33
24 12 0.26
ACGTcount: A:0.62, C:0.06, G:0.05, T:0.26
Consensus pattern (23 bp):
TATAATAAACAAATAAATATAAG
Found at i:8865447 original size:13 final size:13
Alignment explanation
Indices: 8865429--8865453 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8865419 TCTCAATGTC
8865429 TTTACATATGTTA
1 TTTACATATGTTA
8865442 TTTACATATGTT
1 TTTACATATGTT
8865454 TTTTTATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (13 bp):
TTTACATATGTTA
Found at i:8866817 original size:161 final size:160
Alignment explanation
Indices: 8866632--8867847 Score: 969
Period size: 161 Copynumber: 7.6 Consensus size: 160
8866622 TTTGTTTACA
* * *
8866632 ACTTTTTATGCTGTTAAAAGGTAAAAATGCAAATTTATAGTTATTGTTCTATTTTAATAGTTTTG
1 ACTTTTTATGCTGTTAAAAGGTAAAAATACAAATTTATA-TTATTGTTCTATTTTAACAGTTTGG
* * * * *
8866697 ATAGTTTCAATAAATGATATTAAACTTATCCAAATTATTGAATTTAGTTTTCACGGTTGATATGT
65 ATAGCTTCAATACATGATATTAAACTTATCTAAATGATTGAACTTAGTTTTCACGGTTGATATGT
* * * *
8866762 ATGAAAAAATTATTGTTTACGTCTATTTAAG
130 GTGAAAAAGTTATTGTTTACGTCTGTTTAGG
* * *
8866793 ACTTTTTATGCTGTTAATAGGTAAAAATACAAATTT-TTTGTCATTGTTCTATTTTAACAATTTG
1 ACTTTTTATGCTGTTAAAAGGTAAAAATACAAATTTATAT-T-ATTGTTCTATTTTAACAGTTTG
* * * * *
8866857 GATAGCTCCAATACTTGATATTAAACTTAT-TCGAATGATTGAACTTAGTTTCCACGATTGATAT
64 GATAGCTTCAATACATGATATTAAACTTATCT-AAATGATTGAACTTAGTTTTCACGGTTGATAT
* *
8866921 GTGTGAAAAAGTTATTGTTTATGTCTGTTTAAG
128 GTGTGAAAAAGTTATTGTTTACGTCTGTTTAGG
* * * *
8866954 AC-TTTT-TG-TGTTAAGAGGCAAAAATGCAAAATTGT-TATTATTGTTCTATTTTAACAGTTTA
1 ACTTTTTATGCTGTTAAAAGGTAAAAATAC-AAATT-TATATTATTGTTCTATTTTAACAGTTTG
* * * * * * *
8867015 CATAGCTTCAATACATGATTTTAAA-TTAT-TAGTATAATTGAACTT-GATATCCACAGTTGATA
64 GATAGCTTCAATACATGATATTAAACTTATCTA-AATGATTGAACTTAG-TTTTCACGGTTGATA
* *
8867077 TGTGTGAAAAAGCTATCGTTTACGTCTGTTTAGG
127 TGTGTGAAAAAGTTATTGTTTACGTCTGTTTAGG
** * * *
8867111 ACTTTTTATGCCATTAAAA-GTTAAAATGCAAATTTGATATTATTGTTCTGTTTTAACAGTTTGG
1 ACTTTTTATGCTGTTAAAAGGTAAAAATACAAATTT-ATATTATTGTTCTATTTTAACAGTTTGG
* * * *
8867175 ATAGCTTCAATACGTGATATTAAACTTGTCTAAATCATTGAACTTCA--TTTCTATGGTTGATAT
65 ATAGCTTCAATACATGATATTAAACTTATCTAAATGATTGAACTT-AGTTTTC-ACGGTTGATAT
* ** *
8867238 GTGTGAAAAAGTTGTCATTTACGTCTATTTAGG
128 GTGTGAAAAAGTTATTGTTTACGTCTGTTTAGG
* * * * *
8867271 A-TATTTT-TACTGTGAAAAGG-AAAAACTACAAATTTGCTATTATTATTCTATTTTAATAGTTT
1 ACT-TTTTATGCTGTTAAAAGGTAAAAA-TACAAATTT-ATATTATTGTTCTATTTTAACAGTTT
* * * * *
8867333 GGATGGCTTCAATACATGATATTCAACTT-TTTCGAATGATTGAACTT-GGTTT-A----T-ATA
63 GGATAGCTTCAATACATGATATTAAACTTATCT-AAATGATTGAACTTAGTTTTCACGGTTGATA
* * *
8867390 --TGTGAAAAAGTTGTTGTTTACCTTTGTTTAGG
127 TGTGTGAAAAAGTTATTGTTTACGTCTGTTTAGG
* * * * * * * * *
8867422 ATTTTTTATGCCGTTAAAAGGAAAAAAATTCAAATTTACTGTTATTATTATGTTTTAACAGTTTA
1 ACTTTTTATGCTGTTAAAAGG-TAAAAATACAAATTTA-TATTATTGTTCTATTTTAACAGTTTG
* * * * * * *
8867487 GATAGCTTCAATACATGATATTAAACTTTTTTGAATGATTAAACTTGGTTTTCACAGTTGATATA
64 GATAGCTTCAATACATGATATTAAACTTATCTAAATGATTGAACTTAGTTTTCACGGTTGATATG
* *
8867552 TATGAAAAAGTTATTGTTTACCTCTGTTTAGG
129 TGTGAAAAAGTTATTGTTTACGTCTGTTTAGG
* * * * ** * * *
8867584 ACTTTTTTTG-TCATTGAAAGGCAAAAATACAAAGTTGCTATTATTCTTCTATTTTAACAATGTG
1 ACTTTTTATGCT-GTTAAAAGGTAAAAATACAAA-TTTATATTATTGTTCTATTTTAACAGTTTG
* * * * * * *
8867648 GATAGCTTCCATACATGATATTAAACTTGTCTAAATGATTGAATTTGGTTTCCATGATTGATATG
64 GATAGCTTCAATACATGATATTAAACTTATCTAAATGATTGAACTTAGTTTTCACGGTTGATATG
* *
8867713 TGTGAAAGGCCAAAATGCTTTTATTGTTTACGTTTGTTTAAG
129 TGTG--A----AAAA-G---TTATTGTTTACGTCTGTTTAGG
* * * * * * *
8867755 ACTTTTGTA--CTGTTAAAGGGCAAATATATAATTTTACAGTTATAT-TTCTATTTTAACAATTT
1 ACTTTT-TATGCTGTTAAAAGGTAAAAATACAAATTTATA-TTAT-TGTTCTATTTTAACAGTTT
** * *
8867817 ATATAGATTAAATACATGATATTAAACTTAT
63 GGATAGCTTCAATACATGATATTAAACTTAT
8867848 TTGAATTTTA
Statistics
Matches: 854, Mismatches: 147, Indels: 99
0.78 0.13 0.09
Matches are distributed among these distances:
151 32 0.04
152 11 0.01
153 71 0.08
154 13 0.02
155 1 0.00
156 1 0.00
157 61 0.07
158 67 0.08
159 82 0.10
160 147 0.17
161 225 0.26
162 46 0.05
163 1 0.00
167 4 0.00
168 1 0.00
169 3 0.00
170 60 0.07
171 27 0.03
172 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.43
Consensus pattern (160 bp):
ACTTTTTATGCTGTTAAAAGGTAAAAATACAAATTTATATTATTGTTCTATTTTAACAGTTTGGA
TAGCTTCAATACATGATATTAAACTTATCTAAATGATTGAACTTAGTTTTCACGGTTGATATGTG
TGAAAAAGTTATTGTTTACGTCTGTTTAGG
Found at i:8867485 original size:153 final size:152
Alignment explanation
Indices: 8867228--8867698 Score: 482
Period size: 153 Copynumber: 3.0 Consensus size: 152
8867218 TTCATTTCTA
* * ** * * * *
8867228 TGGTTGATATGTGTGAAAAAGTTGTCATTTACGTCTATTTAGGATATTTTTA--CTGTGAAAAGG
1 TGGTTTATATATGTGAAAAAGTTGTTGTTTACCTCTGTTTAGGAT-TTTTTATGCCGTTAAAAGG
* * *
8867291 AAAAACTACAAATTTGCTATTATTATTCTATTTTAATAGTTTGGATGGCTTCAATACATGATATT
65 AAAAAATACAAATTTGCTATTATTATTCTATTTTAACAGTTTGGATAGCTTCAATACATGATATT
*
8867356 CAACTTTTTCGAATGATTGAACT
130 AAACTTTTTCGAATGATTGAACT
*
8867379 TGGTTTATATATGTGAAAAAGTTGTTGTTTACCTTTGTTTAGGATTTTTTATGCCGTTAAAAGGA
1 TGGTTTATATATGTGAAAAAGTTGTTGTTTACCTCTGTTTAGGATTTTTTATGCCGTTAAAAGG-
* * * * * *
8867444 AAAAAATTCAAATTTACTGTTATTATTATGTTTTAACAGTTTAGATAGCTTCAATACATGATATT
65 AAAAAATACAAATTTGCTATTATTATTCTATTTTAACAGTTTGGATAGCTTCAATACATGATATT
* *
8867509 AAACTTTTTTGAATGATTAAACT
130 AAACTTTTTCGAATGATTGAACT
* * *
8867532 TGGTTTTCACAGTTGATATATATGAAAAAGTTATTGTTTACCTCTGTTTAGGACTTTTTT-TGTC
1 TGG---T-----TT-ATATATGTGAAAAAGTTGTTGTTTACCTCTGTTTAGGA-TTTTTTATGCC
* * * * * * * *
8867596 ATTGAAAGGCAAAAATACAAAGTTGCTATTATTCTTCTATTTTAACAATGTGGATAGCTTCCATA
56 GTTAAAAGGAAAAAATACAAATTTGCTATTATTATTCTATTTTAACAGTTTGGATAGCTTCAATA
* * *
8867661 CATGATATTAAAC-TTGTCTAAATGATTGAATT
121 CATGATATTAAACTTTTTC-GAATGATTGAACT
8867693 TGGTTT
1 TGGTTT
8867699 CCATGATTGA
Statistics
Matches: 262, Mismatches: 44, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
150 6 0.02
151 38 0.15
152 9 0.03
153 81 0.31
156 1 0.00
158 1 0.00
160 3 0.01
161 72 0.27
162 45 0.17
163 6 0.02
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.43
Consensus pattern (152 bp):
TGGTTTATATATGTGAAAAAGTTGTTGTTTACCTCTGTTTAGGATTTTTTATGCCGTTAAAAGGA
AAAAATACAAATTTGCTATTATTATTCTATTTTAACAGTTTGGATAGCTTCAATACATGATATTA
AACTTTTTCGAATGATTGAACT
Found at i:8880020 original size:17 final size:17
Alignment explanation
Indices: 8879995--8880042 Score: 87
Period size: 17 Copynumber: 2.8 Consensus size: 17
8879985 GATTTTAAGG
8879995 TTAGGGTTTCATGGGAT
1 TTAGGGTTTCATGGGAT
*
8880012 TTGGGGTTTCATGGGAT
1 TTAGGGTTTCATGGGAT
8880029 TTAGGGTTTCATGG
1 TTAGGGTTTCATGG
8880043 AATTATATGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.15, C:0.06, G:0.38, T:0.42
Consensus pattern (17 bp):
TTAGGGTTTCATGGGAT
Found at i:8882174 original size:49 final size:48
Alignment explanation
Indices: 8882121--8882399 Score: 224
Period size: 49 Copynumber: 5.6 Consensus size: 48
8882111 GATTTTTTTT
*
8882121 TTTTTTGAAAAGGTGCTCCTATAATCATAGACAAGTAACTTTAAAAATC
1 TTTTTTGAAAA-GTGCTCCTATAAACATAGACAAGTAACTTTAAAAATC
*
8882170 TTTTTTTTTTTTTGAAAAAGTGCTCCTATAAACA-AAAGCAAGTAACTTTAAAAATC
1 -------TTTTTTG-AAAAGTGCTCCTATAAACATAGA-CAAGTAACTTTAAAAATC
* * * * * * *
8882226 TTTCTTTGAAAAGTGTTCTTATATACATAGGCAAATGACTTTAGAAATC
1 TTT-TTTGAAAAGTGCTCCTATAAACATAGACAAGTAACTTTAAAAATC
* * *
8882275 TCTATTTGAAAAGTGCTCTTGTAAACATA-AGCAAGTAACTTTAAAAATC
1 T-TTTTTGAAAAGTGCTCCTATAAACATAGA-CAAGTAACTTTAAAAATC
* * * * * *
8882324 TCTTTTTAAAAAAT-TTCCCATAAACATAGACAAATGACTTTAAAAATC
1 T-TTTTTGAAAAGTGCTCCTATAAACATAGACAAGTAACTTTAAAAATC
*
8882372 TTTCTTTGAAAAG-GCTCTTATAAACATA
1 TTT-TTTGAAAAGTGCTCCTATAAACATA
8882400 AGCAAGTTCT
Statistics
Matches: 182, Mismatches: 32, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
47 2 0.01
48 45 0.25
49 84 0.46
50 6 0.03
55 2 0.01
56 39 0.21
57 4 0.02
ACGTcount: A:0.39, C:0.14, G:0.10, T:0.36
Consensus pattern (48 bp):
TTTTTTGAAAAGTGCTCCTATAAACATAGACAAGTAACTTTAAAAATC
Found at i:8882184 original size:56 final size:56
Alignment explanation
Indices: 8882114--8882228 Score: 187
Period size: 56 Copynumber: 2.1 Consensus size: 56
8882104 TGGGGGAGAT
* * *
8882114 TTTTTTTTTTTTTGAAAAGGTGCTCCTATAATC-ATAGACAAGTAACTTTAAAAATC
1 TTTTTTTTTTTTTGAAAAAGTGCTCCTATAAACAAAAG-CAAGTAACTTTAAAAATC
8882170 TTTTTTTTTTTTTGAAAAAGTGCTCCTATAAACAAAAGCAAGTAACTTTAAAAATC
1 TTTTTTTTTTTTTGAAAAAGTGCTCCTATAAACAAAAGCAAGTAACTTTAAAAATC
8882226 TTT
1 TTT
8882229 CTTTGAAAAG
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
56 52 0.95
57 3 0.05
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.43
Consensus pattern (56 bp):
TTTTTTTTTTTTTGAAAAAGTGCTCCTATAAACAAAAGCAAGTAACTTTAAAAATC
Found at i:8882322 original size:98 final size:97
Alignment explanation
Indices: 8882180--8882406 Score: 305
Period size: 98 Copynumber: 2.3 Consensus size: 97
8882170 TTTTTTTTTT
* * * *
8882180 TTTGAAAAAGTGCTCCTATAAACAAAAGCAAGTAACTTTAAAAATCT-TTCTTTGAAAAGTGTTC
1 TTTG-AAAAGTGCTCTTATAAACATAAGCAAGTAACTTTAAAAATCTCTT-TTTAAAAAAT-TTC
** * * *
8882244 TTATATACATAGGCAAATGACTTTAGAAATCTCTA
63 CCATAAACATAGACAAATGACTTTAAAAATCTCTA
*
8882279 TTTGAAAAGTGCTCTTGTAAACATAAGCAAGTAACTTTAAAAATCTCTTTTTAAAAAATTTCCCA
1 TTTGAAAAGTGCTCTTATAAACATAAGCAAGTAACTTTAAAAATCTCTTTTTAAAAAATTTCCCA
* *
8882344 TAAACATAGACAAATGACTTTAAAAATCTTTC
66 TAAACATAGACAAATGACTTTAAAAATCTCTA
8882376 TTTGAAAAG-GCTCTTATAAACATAAGCAAGT
1 TTTGAAAAGTGCTCTTATAAACATAAGCAAGT
8882407 TCTCCTATAA
Statistics
Matches: 114, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
96 21 0.18
97 40 0.35
98 47 0.41
99 6 0.05
ACGTcount: A:0.41, C:0.15, G:0.11, T:0.33
Consensus pattern (97 bp):
TTTGAAAAGTGCTCTTATAAACATAAGCAAGTAACTTTAAAAATCTCTTTTTAAAAAATTTCCCA
TAAACATAGACAAATGACTTTAAAAATCTCTA
Found at i:8882486 original size:50 final size:48
Alignment explanation
Indices: 8882411--8882553 Score: 180
Period size: 49 Copynumber: 2.9 Consensus size: 48
8882401 GCAAGTTCTC
* * * * * *
8882411 CTATAAACATAGGCAAGTGATTTTAAAATTTTTTTTTATGGAAAGTGCTT
1 CTATAAACATAAGCAAGTGACTTTAAAAATCTCTTTT-TGAAAAGTGC-T
*
8882461 CTATAAATATAAGCAAGTGACTTTAAAAATCTCTTTTTGAAAAGTGCT
1 CTATAAACATAAGCAAGTGACTTTAAAAATCTCTTTTTGAAAAGTGCT
8882509 CTTATAAACATAAGCAAGTGACTTTAAAAATCT-TTCTTTGAAAAG
1 C-TATAAACATAAGCAAGTGACTTTAAAAATCTCTT-TTTGAAAAG
8882554 CTTTGAAAGT
Statistics
Matches: 83, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
48 4 0.05
49 48 0.58
50 31 0.37
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.37
Consensus pattern (48 bp):
CTATAAACATAAGCAAGTGACTTTAAAAATCTCTTTTTGAAAAGTGCT
Found at i:8882572 original size:24 final size:25
Alignment explanation
Indices: 8882545--8882602 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
8882535 AAAATCTTTC
*
8882545 TTTGAAAAGCTTTGAA-AGTCTGAT
1 TTTGAAAAGCTTTGAAGAGTCTCAT
* *
8882569 TTTGAAAAAGTTTTGAAGAGTGTCAT
1 TTTG-AAAAGCTTTGAAGAGTCTCAT
8882595 TTTGAAAA
1 TTTGAAAA
8882603 ATTAGGTTAC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
24 4 0.14
25 15 0.52
26 10 0.34
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (25 bp):
TTTGAAAAGCTTTGAAGAGTCTCAT
Found at i:8882583 original size:25 final size:26
Alignment explanation
Indices: 8882545--8882603 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
8882535 AAAATCTTTC
*
8882545 TTTG-AAAAGCTTTGAA-AGTCTGAT
1 TTTGAAAAAGCTTTGAAGAGTCTCAT
* *
8882569 TTTGAAAAAGTTTTGAAGAGTGTCAT
1 TTTGAAAAAGCTTTGAAGAGTCTCAT
8882595 TTTGAAAAA
1 TTTGAAAAA
8882604 TTAGGTTACA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 4 0.13
25 11 0.37
26 15 0.50
ACGTcount: A:0.37, C:0.05, G:0.20, T:0.37
Consensus pattern (26 bp):
TTTGAAAAAGCTTTGAAGAGTCTCAT
Found at i:8891003 original size:11 final size:11
Alignment explanation
Indices: 8890971--8891011 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
8890961 AATATTGTGT
8890971 TAGTTTATCAA
1 TAGTTTATCAA
*
8890982 TAGTTCA--AA
1 TAGTTTATCAA
*
8890991 TAGTTGATCAA
1 TAGTTTATCAA
8891002 TAGTTTATCA
1 TAGTTTATCA
8891012 TTATGGGTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
9 8 0.32
11 17 0.68
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.41
Consensus pattern (11 bp):
TAGTTTATCAA
Found at i:8894539 original size:28 final size:27
Alignment explanation
Indices: 8894508--8894570 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 27
8894498 TGTTTTTTCA
8894508 TCATGTTTGCCTATTTTTTCTTTTTCTT
1 TCAT-TTTGCCTATTTTTTCTTTTTCTT
*** * *
8894536 TCATTTTTTTTATTTTTTGTTTTTCTAA
1 TCATTTTGCCTATTTTTTCTTTTTCT-T
8894564 TCATTTT
1 TCATTTT
8894571 TTTTTTATTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
27 18 0.62
28 11 0.38
ACGTcount: A:0.11, C:0.13, G:0.05, T:0.71
Consensus pattern (27 bp):
TCATTTTGCCTATTTTTTCTTTTTCTT
Found at i:8894549 original size:27 final size:28
Alignment explanation
Indices: 8894519--8894574 Score: 87
Period size: 27 Copynumber: 2.0 Consensus size: 28
8894509 CATGTTTGCC
*
8894519 TATTTTTTCTTTTTCT-TTCATTTTTTT
1 TATTTTTTCTTTTTCTAATCATTTTTTT
*
8894546 TATTTTTTGTTTTTCTAATCATTTTTTT
1 TATTTTTTCTTTTTCTAATCATTTTTTT
8894574 T
1 T
8894575 TTATTATGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 15 0.58
28 11 0.42
ACGTcount: A:0.11, C:0.09, G:0.02, T:0.79
Consensus pattern (28 bp):
TATTTTTTCTTTTTCTAATCATTTTTTT
Found at i:8894571 original size:28 final size:27
Alignment explanation
Indices: 8894493--8894574 Score: 85
Period size: 28 Copynumber: 3.0 Consensus size: 27
8894483 TTAATAATTT
***
8894493 TTTTTTGTTTTT-TCATCATGTTTGCCTA
1 TTTTTTGTTTTTCT-ATCAT-TTTTTTTA
* *
8894521 TTTTTTCTTTTTCTTTCATTTTTTTTA
1 TTTTTTGTTTTTCTATCATTTTTTTTA
8894548 TTTTTTGTTTTTCTAATCATTTTTTTT
1 TTTTTTGTTTTTCT-ATCATTTTTTTT
8894575 TTATTATGAG
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
27 18 0.40
28 26 0.58
29 1 0.02
ACGTcount: A:0.10, C:0.11, G:0.05, T:0.74
Consensus pattern (27 bp):
TTTTTTGTTTTTCTATCATTTTTTTTA
Found at i:8898158 original size:29 final size:30
Alignment explanation
Indices: 8898111--8898168 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
8898101 ATTATTTTCT
*
8898111 AAATAAATTTTTAAAATTTTA-TTATATTA
1 AAATAAATTTTTAAAATTTCATTTATATTA
**
8898140 AAATAAATTTTTATCATTTCATTTATATT
1 AAATAAATTTTTAAAATTTCATTTATATT
8898169 TACGTAAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (30 bp):
AAATAAATTTTTAAAATTTCATTTATATTA
Found at i:8903814 original size:12 final size:12
Alignment explanation
Indices: 8903797--8903844 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
8903787 TAACTTGACC
8903797 ATAATTAAAAAA
1 ATAATTAAAAAA
*
8903809 ATAATTAAAATA
1 ATAATTAAAAAA
*
8903821 ACAA-TAAAATAA
1 ATAATTAAAA-AA
*
8903833 ATAAATAAAAAA
1 ATAATTAAAAAA
8903845 TGAACTACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
11 5 0.17
12 20 0.67
13 5 0.17
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (12 bp):
ATAATTAAAAAA
Found at i:8904781 original size:3 final size:3
Alignment explanation
Indices: 8904773--8904808 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
8904763 ATTTATTTAT
8904773 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8904809 TAATTAATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 4 0.13
3 27 0.87
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:8905407 original size:45 final size:46
Alignment explanation
Indices: 8905341--8905632 Score: 202
Period size: 46 Copynumber: 6.3 Consensus size: 46
8905331 TAGAGGCTTG
* * * * *
8905341 ACAACTTTTAAAAAATTAAACTGAAAGGTT-TTTTTCGTTAGAAACTC-
1 ACAAC-TTT-AAAAATCAAACTGAAAGGTTCCTCTT-ATTAGAAGCTCA
* * *
8905388 ACAACTTTAAAAATCAAACTAAAAGGTTCATCTTAATAGAAGCTCA
1 ACAACTTTAAAAATCAAACTGAAAGGTTCCTCTTATTAGAAGCTCA
* * * **
8905434 ACAACTTTAAAAATTAAACTAAAAGATTCCTCTTATTA-AAGCCTTG
1 ACAACTTTAAAAATCAAACTGAAAGGTTCCTCTTATTAGAAG-CTCA
* * ** * * *
8905480 ACAATTTTAAAAATCAAATTGAAAGACTCTTCTCATTAGAGGCTCA
1 ACAACTTTAAAAATCAAACTGAAAGGTTCCTCTTATTAGAAGCTCA
**
8905526 ACAACTTTAAAAATCAAACTGAAAGGTGT-CTCTTATTA-AAGGCTTG
1 ACAACTTTAAAAATCAAACTGAAAGGT-TCCTCTTATTAGAA-GCTCA
* * * ***
8905572 ACAATTTTAAAAATCAAATTAAAAAACTCCT-TTCATTA-AAGGCTCA
1 ACAACTTTAAAAATCAAACTGAAAGGTTCCTCTT-ATTAGAA-GCTCA
*
8905618 ACGACTTTAAAAATC
1 ACAACTTTAAAAATC
8905633 TCACTTGAAG
Statistics
Matches: 195, Mismatches: 42, Indels: 17
0.77 0.17 0.07
Matches are distributed among these distances:
45 33 0.17
46 154 0.79
47 8 0.04
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.31
Consensus pattern (46 bp):
ACAACTTTAAAAATCAAACTGAAAGGTTCCTCTTATTAGAAGCTCA
Found at i:8905489 original size:46 final size:46
Alignment explanation
Indices: 8905388--8905632 Score: 235
Period size: 46 Copynumber: 5.3 Consensus size: 46
8905378 TTAGAAACTC
* * *
8905388 ACAACTTTAAAAATCAAACTAAAAGGTTCATCTTAATAGAA-GCTCA
1 ACAACTTTAAAAATCAAACTAAAAGATTCCTCTTATTA-AAGGCTCA
* * **
8905434 ACAACTTTAAAAATTAAACTAAAAGATTCCTCTTATTAAAGCCTTG
1 ACAACTTTAAAAATCAAACTAAAAGATTCCTCTTATTAAAGGCTCA
* * * * * * *
8905480 ACAATTTTAAAAATCAAATTGAAAGACTCTTCTCATTAGAGGCTCA
1 ACAACTTTAAAAATCAAACTAAAAGATTCCTCTTATTAAAGGCTCA
* * **
8905526 ACAACTTTAAAAATCAAACTGAAAGGTGT-CTCTTATTAAAGGCTTG
1 ACAACTTTAAAAATCAAACTAAAAGAT-TCCTCTTATTAAAGGCTCA
* * * *
8905572 ACAATTTTAAAAATCAAATTAAAAAACTCCT-TTCATTAAAGGCTCA
1 ACAACTTTAAAAATCAAACTAAAAGATTCCTCTT-ATTAAAGGCTCA
*
8905618 ACGACTTTAAAAATC
1 ACAACTTTAAAAATC
8905633 TCACTTGAAG
Statistics
Matches: 158, Mismatches: 37, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
45 5 0.03
46 152 0.96
47 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (46 bp):
ACAACTTTAAAAATCAAACTAAAAGATTCCTCTTATTAAAGGCTCA
Found at i:8905489 original size:92 final size:92
Alignment explanation
Indices: 8905388--8905632 Score: 296
Period size: 92 Copynumber: 2.7 Consensus size: 92
8905378 TTAGAAACTC
* * ** * *
8905388 ACAACTTTAAAAATCAAACTAAAAGGTTCATCTTAATAGAAGCTCAACAACTTTAAAAATTAAAC
1 ACAATTTTAAAAATCAAATTAAAAGACTCATCTCAATAGAAGCTCAACAACTTTAAAAATCAAAC
8905453 TAAAAGAT-TCCTCTTATTAAAGCCTTG
66 TAAAAGATGT-CTCTTATTAAAGCCTTG
* * * *
8905480 ACAATTTTAAAAATCAAATTGAAAGACTCTTCTCATTAGAGGCTCAACAACTTTAAAAATCAAAC
1 ACAATTTTAAAAATCAAATTAAAAGACTCATCTCAATAGAAGCTCAACAACTTTAAAAATCAAAC
* * *
8905545 TGAAAGGTGTCTCTTATTAAAGGCTTG
66 TAAAAGATGTCTCTTATTAAAGCCTTG
* * * * *
8905572 ACAATTTTAAAAATCAAATTAAAAAACTCCTTTCATTA-AAGGCTCAACGACTTTAAAAATC
1 ACAATTTTAAAAATCAAATTAAAAGACTCATCTCAATAGAA-GCTCAACAACTTTAAAAATC
8905633 TCACTTGAAG
Statistics
Matches: 132, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
91 1 0.01
92 130 0.98
93 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (92 bp):
ACAATTTTAAAAATCAAATTAAAAGACTCATCTCAATAGAAGCTCAACAACTTTAAAAATCAAAC
TAAAAGATGTCTCTTATTAAAGCCTTG
Found at i:8905491 original size:138 final size:139
Alignment explanation
Indices: 8905328--8905612 Score: 319
Period size: 138 Copynumber: 2.1 Consensus size: 139
8905318 AAGCTCTTCC
* * * ** * * *
8905328 CATTAGAGGCTTGACAACTTTTAAAAAATTAAACTGAAAGGTTTTTTTCGTTAGAAACTC-ACAA
1 CATTAAAGCCTTGACAACTTTT-AAAAATCAAACTGAAAGACTCTTCTCATTAGAAACTCAACAA
*
8905392 CTTTAAAAATCAAACTAAAAGGT-TCATCTTAATAGAA-GCTCAACAACTTTAAAAATTAAACTA
65 CTTTAAAAATCAAACTAAAAGGTGTC-TCTTAATA-AAGGCTCAACAACTTTAAAAATCAAACTA
* *
8905455 AAAGATTCCTCTT
128 AAAAACTCCT-TT
* **
8905468 -ATTAAAGCCTTGACAA-TTTTAAAAATCAAATTGAAAGACTCTTCTCATTAGAGGCTCAACAAC
1 CATTAAAGCCTTGACAACTTTTAAAAATCAAACTGAAAGACTCTTCTCATTAGAAACTCAACAAC
* * ** * *
8905531 TTTAAAAATCAAACTGAAAGGTGTCTCTTATTAAAGGCTTGACAATTTTAAAAATCAAATTAAAA
66 TTTAAAAATCAAACTAAAAGGTGTCTCTTAATAAAGGCTCAACAACTTTAAAAATCAAACTAAAA
8905596 AACTCCTTT
131 AACTCCTTT
8905605 CATTAAAG
1 CATTAAAG
8905613 GCTCAACGAC
Statistics
Matches: 121, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
137 32 0.26
138 73 0.60
139 16 0.13
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (139 bp):
CATTAAAGCCTTGACAACTTTTAAAAATCAAACTGAAAGACTCTTCTCATTAGAAACTCAACAAC
TTTAAAAATCAAACTAAAAGGTGTCTCTTAATAAAGGCTCAACAACTTTAAAAATCAAACTAAAA
AACTCCTTT
Found at i:8906618 original size:9 final size:9
Alignment explanation
Indices: 8906606--8906652 Score: 51
Period size: 9 Copynumber: 5.1 Consensus size: 9
8906596 CTTTTATCTT
*
8906606 TTTTTTTCCT
1 TTTTTTT-CA
8906616 TTTTTTTCA
1 TTTTTTTCA
8906625 TTTTTTT-A
1 TTTTTTTCA
*
8906633 CTTTTTGTCA
1 -TTTTTTTCA
8906643 TTTTTTTCA
1 TTTTTTTCA
8906652 T
1 T
8906653 GCAAAATGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
8 1 0.03
9 23 0.72
10 8 0.25
ACGTcount: A:0.09, C:0.13, G:0.02, T:0.77
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:8906628 original size:18 final size:18
Alignment explanation
Indices: 8906606--8906649 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
8906596 CTTTTATCTT
* *
8906606 TTTTTTTCCTTTTTTTTCA
1 TTTTTTTAC-TTTTTGTCA
8906625 TTTTTTTACTTTTTGTCA
1 TTTTTTTACTTTTTGTCA
8906643 TTTTTTT
1 TTTTTTT
8906650 CATGCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.07, C:0.11, G:0.02, T:0.80
Consensus pattern (18 bp):
TTTTTTTACTTTTTGTCA
Found at i:8909010 original size:20 final size:21
Alignment explanation
Indices: 8908983--8909032 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
8908973 GAAAAAAATG
*
8908983 AAAAAGAAAAATAAGG-GAAA
1 AAAAAGAAAAAAAAGGAGAAA
*
8909003 AGAAAGAAAAAAAAGGAGAAA
1 AAAAAGAAAAAAAAGGAGAAA
8909024 AAAAAGAAA
1 AAAAAGAAA
8909033 TGATTGATTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (21 bp):
AAAAAGAAAAAAAAGGAGAAA
Found at i:8910077 original size:71 final size:69
Alignment explanation
Indices: 8909988--8910354 Score: 332
Period size: 70 Copynumber: 5.3 Consensus size: 69
8909978 TAAATCTCTA
* * * *
8909988 AAATCTGTGAATCTTTAACCACTTTTGGGAACTTTTGAAAAATTTAAATCTTTAACTCTTGTGAA
1 AAATTTGTGAATCTTTAACC-CTTTTGCGAACTTTTG-AAATTTTAAATCTTTGACTCTTGTGAA
8910053 TCTTTG
64 TCTTTG
* * * * **
8910059 AAATTTGTGAAGCATTAACCTTTTTAGTGAAAC-TTTGAAAATTTTAAATCTTTGACTCTTGCAA
1 AAATTTGTGAATCTTTAACCCTTTT-GCG-AACTTTTG-AAATTTTAAATCTTTGACTCTTGTGA
*
8910123 ATGTTTG
63 ATCTTTG
* * * * * **
8910130 AAATTTGTGAAGCTTTAACCCCTCTTACGAACCTTTGAAGTTTTAAATCTTTGACTCTTACGAAT
1 AAATTTGTGAATCTTTAA-CCCTTTTGCGAACTTTTGAAATTTTAAATCTTTGACTCTTGTGAAT
*
8910195 CTATG
65 CTTTG
* * * *
8910200 GAATTTGTGAATTTTTAACCC--TTGTGAA-TCTTTGAAATTTTCAAA-ATTTGACTCTTGTGAA
1 AAATTTGTGAATCTTTAACCCTTTTGCGAACT-TTTGAAATTTT-AAATCTTTGACTCTTGTGAA
*
8910261 TTTTTG
64 TCTTTG
* * * * *
8910267 GAATTTATGAATCTTTAACCCTTCTTGCGAA-TCTTTGAAATTTAAAATTTTTTACTCTTGTGAA
1 AAATTTGTGAATCTTTAACCCTT-TTGCGAACT-TTTGAAATTTTAAATCTTTGACTCTTGTGAA
8910331 TCTTTG
64 TCTTTG
*
8910337 AAATTTGTGAATATTTAA
1 AAATTTGTGAATCTTTAA
8910355 TCTCTCACGT
Statistics
Matches: 244, Mismatches: 42, Indels: 21
0.79 0.14 0.07
Matches are distributed among these distances:
67 51 0.21
68 3 0.01
69 6 0.02
70 102 0.42
71 74 0.30
72 8 0.03
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.44
Consensus pattern (69 bp):
AAATTTGTGAATCTTTAACCCTTTTGCGAACTTTTGAAATTTTAAATCTTTGACTCTTGTGAATC
TTTG
Found at i:8910257 original size:33 final size:32
Alignment explanation
Indices: 8910038--8910342 Score: 110
Period size: 33 Copynumber: 8.8 Consensus size: 32
8910028 AATTTAAATC
*
8910038 TTTAACTCTTGTGAATCTTTGAAATTTGTGAAGCA
1 TTTAACTCTTGTGAATCTTTGAAATTT-T-AA-AA
* * *
8910073 -TTAACCTTTTTAGTGAAACTTTGAAAATTTTAAATC
1 TTTAA-C-TCTT-GTGAATCTTTG-AAATTTTAAA-A
* ** * **
8910109 TTTGACTCTTGCAAATGTTTGAAATTTGTGAAGC
1 TTTAACTCTTGTGAATCTTTGAAATTT-T-AAAA
** * * *
8910143 TTTAACCCCTCTTACGAACCTTTGAAGTTTTAAATC
1 TTTAA---CTCTTGTGAATCTTTGAAATTTTAAA-A
* ** * * **
8910179 TTTGACTCTTACGAATCTATGGAATTTGTGAATT
1 TTTAACTCTTGTGAATCTTTGAAATTT-T-AAAA
*
8910213 TTTAACCCTTGTGAATCTTTGAAATTTTCAAAA
1 TTTAACTCTTGTGAATCTTTGAAATTTT-AAAA
* * * **
8910246 TTTGACTCTTGTGAATTTTTGGAATTTATGAATC
1 TTTAACTCTTGTGAATCTTTGAAATTT-T-AAAA
*
8910280 TTTAACCCTTCTTGCGAATCTTTGAAA-TTTAAAA
1 TTTAA--C-TCTTGTGAATCTTTGAAATTTTAAAA
*
8910314 TTTTTTACTCTTGTGAATCTTTGAAATTT
1 --TTTAACTCTTGTGAATCTTTGAAATTT
8910343 GTGAATATTT
Statistics
Matches: 200, Mismatches: 49, Indels: 43
0.68 0.17 0.15
Matches are distributed among these distances:
33 67 0.34
34 51 0.25
35 11 0.05
36 19 0.09
37 46 0.23
38 6 0.03
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.45
Consensus pattern (32 bp):
TTTAACTCTTGTGAATCTTTGAAATTTTAAAA
Found at i:8910305 original size:137 final size:139
Alignment explanation
Indices: 8909995--8910359 Score: 391
Period size: 137 Copynumber: 2.6 Consensus size: 139
8909985 CTAAAATCTG
* *
8909995 TGAATCTTTAACCACTT-TTGGGAACTTTTGAAAAATTTAAATCTTTAACTCTTGTGAATCTTTG
1 TGAATCTTTAACC-CTTCTTGCGAAC-TTTG-AAATTTTAAATCTTTAACTCTTGTGAATCTTTG
* * *
8910059 AAATTTGTGAAGCA-TTAACCTTTTTAGTGAAACTTTGAAAATTTTAAATCTTTGACTCTTGCAA
63 AAATTTGTGAA-TATTTAACC-TCTTAGTGAAACTTTGAAAATTTTAAATATTTGACTCTTGCAA
*
8910123 ATGTTTGAAATTTG
126 ATGTTTGAAATTTA
* * * * * ** * *
8910137 TGAAGCTTTAACCCCTCTTACGAACCTTTGAAGTTTTAAATCTTTGACTCTTACGAATCTATGGA
1 TGAATCTTTAACCCTTCTTGCGAA-CTTTGAAATTTTAAATCTTTAACTCTTGTGAATCTTTGAA
* * ** *
8910202 ATTTGTGAATTTTTAACC-CTT-GTGAATCTTTG-AAATTTTCAAA-ATTTGACTCTTGTGAATT
65 ATTTGTGAATATTTAACCTCTTAGTGAAACTTTGAAAATTTT-AAATATTTGACTCTTGCAAATG
*
8910263 TTTGGAATTTA
129 TTTGAAATTTA
* * *
8910274 TGAATCTTTAACCCTTCTTGCGAATCTTTGAAATTTAAAATTTTTTACTCTTGTGAATCTTTGAA
1 TGAATCTTTAACCCTTCTTGCGAA-CTTTGAAATTTTAAATCTTTAACTCTTGTGAATCTTTGAA
*
8910339 ATTTGTGAATATTTAATCTCT
65 ATTTGTGAATATTTAACCTCT
8910360 CACGTGATAT
Statistics
Matches: 183, Mismatches: 35, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
137 99 0.54
138 15 0.08
139 2 0.01
141 45 0.25
142 21 0.11
143 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.44
Consensus pattern (139 bp):
TGAATCTTTAACCCTTCTTGCGAACTTTGAAATTTTAAATCTTTAACTCTTGTGAATCTTTGAAA
TTTGTGAATATTTAACCTCTTAGTGAAACTTTGAAAATTTTAAATATTTGACTCTTGCAAATGTT
TGAAATTTA
Found at i:8910632 original size:41 final size:40
Alignment explanation
Indices: 8910581--8910780 Score: 184
Period size: 41 Copynumber: 4.9 Consensus size: 40
8910571 AGCATTTAAT
* * *
8910581 CTCTATTGTGAATTCGAAGTCTTTCAACTATAAATTGTTTA
1 CTCTATTGTGAA-TCAAAGTCTTCCAACTATAAATCGTTTA
* * * * *
8910622 CTCTGTTGTGAACTCAAAGTCTTCCAACTGTGAGTCATTTA
1 CTCTATTGTGAA-TCAAAGTCTTCCAACTATAAATCGTTTA
* * * *
8910663 CTCTATTATGAACCTAAAGTCTTCCAACTATGAATCTTTTA
1 CTCTATTGTGAATC-AAAGTCTTCCAACTATAAATCGTTTA
* * *
8910704 CTCTATTGTGAATCTAGAGTTTTCTAACTATAAATCGTTTA
1 CTCTATTGTGAATC-AAAGTCTTCCAACTATAAATCGTTTA
* * * *
8910745 CTCTGTTGTGAACCTAGAGTCTTCCAACTATGAATC
1 CTCTATTGTGAATC-AAAGTCTTCCAACTATAAATC
8910781 ATCTAATTGT
Statistics
Matches: 131, Mismatches: 27, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
40 1 0.01
41 130 0.99
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.40
Consensus pattern (40 bp):
CTCTATTGTGAATCAAAGTCTTCCAACTATAAATCGTTTA
Found at i:8910745 original size:82 final size:83
Alignment explanation
Indices: 8910597--8910780 Score: 221
Period size: 82 Copynumber: 2.2 Consensus size: 83
8910587 TGTGAATTCG
* * * * * *
8910597 AAGTCTTTCAACTATAAAT-TGTTTACTCTGTTGTGAACTCAAAGTCTTCCAACTGTGAGTCATT
1 AAGTCTTCCAACTATGAATCTGTTTACTCTATTGTGAACTCAAAGTCTTCCAACTATAAATCATT
8910661 TACTCTATTATGAACCTA
66 TACTCTATTATGAACCTA
* * * *
8910679 AAGTCTTCCAACTATGAATCT-TTTACTCTATTGTGAA-TCTAGAGTTTTCTAACTATAAATCGT
1 AAGTCTTCCAACTATGAATCTGTTTACTCTATTGTGAACTC-AAAGTCTTCCAACTATAAATCAT
* *
8910742 TTACTCTGTTGTGAACCTA
65 TTACTCTATTATGAACCTA
*
8910761 GAGTCTTCCAACTATGAATC
1 AAGTCTTCCAACTATGAATC
8910781 ATCTAATTGT
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
81 2 0.02
82 84 0.97
83 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (83 bp):
AAGTCTTCCAACTATGAATCTGTTTACTCTATTGTGAACTCAAAGTCTTCCAACTATAAATCATT
TACTCTATTATGAACCTA
Found at i:8910911 original size:42 final size:42
Alignment explanation
Indices: 8910792--8911115 Score: 241
Period size: 42 Copynumber: 7.8 Consensus size: 42
8910782 TCTAATTGTA
* * *
8910792 AATCATTTACTCTATTGTGAA-CCTAAAGTCCTT-TAAATTATG
1 AATCATTTACTCTATTGTGAATCC-AGAGT-CTTCCAAACTATG
* * ** * * * * *
8910834 AATCATTTGCTTTGCTATAAATCTAGGGTCCTCCAAACTATG
1 AATCATTTACTCTATTGTGAATCCAGAGTCTTCCAAACTATG
* * *
8910876 AACCGTTTACTCTATTGTGAATCCAGAGTCTTCCAAATTATG
1 AATCATTTACTCTATTGTGAATCCAGAGTCTTCCAAACTATG
** *
8910918 AATCATTTACTCT-TATGTGAATTTAGAGTCTTCTAAACTATG
1 AATCATTTACTCTAT-TGTGAATCCAGAGTCTTCCAAACTATG
* * * * * *
8910960 TAAT-GTTTACTTTGTTGTGAATCCAGAGTCTTTC-AATTGTG
1 -AATCATTTACTCTATTGTGAATCCAGAGTCTTCCAAACTATG
* * * *
8911001 AATCGTTTACACAATTGTGAATCCAGAGTCTTCC-AACCATG
1 AATCATTTACTCTATTGTGAATCCAGAGTCTTCCAAACTATG
* * * * *
8911042 AATCATTTTCTCTAATGTGAATCCAGAGACCT-CTAACTATG
1 AATCATTTACTCTATTGTGAATCCAGAGTCTTCCAAACTATG
*
8911083 AATCATTTTCTCTGA-TGTGAATCCAGAGTCTTC
1 AATCATTTACTCT-ATTGTGAATCCAGAGTCTTC
8911116 AAGTTTTGAA
Statistics
Matches: 217, Mismatches: 56, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
40 4 0.02
41 96 0.44
42 112 0.52
43 5 0.02
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (42 bp):
AATCATTTACTCTATTGTGAATCCAGAGTCTTCCAAACTATG
Found at i:8911064 original size:19 final size:19
Alignment explanation
Indices: 8911040--8911105 Score: 51
Period size: 19 Copynumber: 3.3 Consensus size: 19
8911030 CTTCCAACCA
8911040 TGAATCATTTTCTCTAATG
1 TGAATCATTTTCTCTAATG
**** *
8911059 TGAATCCAGAGACCTCTAACTA
1 TGAAT-CA-TTTTCTCTAA-TG
*
8911081 TGAATCATTTTCTCTGATG
1 TGAATCATTTTCTCTAATG
8911100 TGAATC
1 TGAATC
8911106 CAGAGTCTTC
Statistics
Matches: 33, Mismatches: 11, Indels: 6
0.66 0.22 0.12
Matches are distributed among these distances:
19 12 0.36
20 7 0.21
21 8 0.24
22 6 0.18
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.38
Consensus pattern (19 bp):
TGAATCATTTTCTCTAATG
Found at i:8911127 original size:41 final size:40
Alignment explanation
Indices: 8910869--8911117 Score: 214
Period size: 41 Copynumber: 6.0 Consensus size: 40
8910859 GGGTCCTCCA
* * *
8910869 AACTATGAACCGTTTACTCTATTGTGAATCCAGAGTCTTCC
1 AACTATGAATCATTTACTCTAATGTGAATCCAGAGTCTT-C
* * **
8910910 AAATTATGAATCATTTACTCTTATGTGAATTTAGAGTCTTC
1 -AACTATGAATCATTTACTCTAATGTGAATCCAGAGTCTTC
* * **
8910951 TAAACTATGTAAT-GTTTACTTTGTTGTGAATCCAGAGTCTTTC
1 --AACTATG-AATCATTTACTCTAATGTGAATCCAGAGTC-TTC
* * * *
8910994 AATTGTGAATCGTTTACAC-AATTGTGAATCCAGAGTCTTCC
1 AACTATGAATCATTTACTCTAA-TGTGAATCCAGAGTCTT-C
* * * *
8911035 AACCATGAATCATTTTCTCTAATGTGAATCCAGAGACCTC
1 AACTATGAATCATTTACTCTAATGTGAATCCAGAGTCTTC
* *
8911075 TAACTATGAATCATTTTCTCTGATGTGAATCCAGAGTCTTC
1 -AACTATGAATCATTTACTCTAATGTGAATCCAGAGTCTTC
8911116 AA
1 AA
8911118 GTTTTGAATC
Statistics
Matches: 167, Mismatches: 32, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
40 8 0.05
41 92 0.55
42 61 0.37
43 6 0.04
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.37
Consensus pattern (40 bp):
AACTATGAATCATTTACTCTAATGTGAATCCAGAGTCTTC
Found at i:8911200 original size:21 final size:21
Alignment explanation
Indices: 8911154--8911193 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
8911144 ATCTTTAAAA
8911154 AAAAAAGAAAAATAGAAAAGC
1 AAAAAAGAAAAATAGAAAAGC
8911175 AAAAAAGCAAAAATA-AAAA
1 AAAAAAG-AAAAATAGAAAA
8911194 CGAAAAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.80, C:0.05, G:0.10, T:0.05
Consensus pattern (21 bp):
AAAAAAGAAAAATAGAAAAGC
Found at i:8913253 original size:25 final size:26
Alignment explanation
Indices: 8913225--8913287 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 26
8913215 ACCCCAAAAG
* *
8913225 AAACCCTAAACCCCAAACCCTAACT-
1 AAACCCTAAACCCCAAAACCAAACTC
* *
8913250 AAACCTTAAATCCCAAAACCAAACTCC
1 AAACCCTAAACCCCAAAACCAAACT-C
8913277 AAACCCTAAAC
1 AAACCCTAAAC
8913288 ATAAAACCTA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
25 21 0.70
27 9 0.30
ACGTcount: A:0.48, C:0.40, G:0.00, T:0.13
Consensus pattern (26 bp):
AAACCCTAAACCCCAAAACCAAACTC
Found at i:8913297 original size:13 final size:12
Alignment explanation
Indices: 8913281--8913324 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 12
8913271 AACTCCAAAC
*
8913281 CCTAAACATAAAA
1 CCTAAAC-TTAAA
8913294 CCTAAACTTAAA
1 CCTAAACTTAAA
8913306 CCTCAAACCTTAAA
1 CCT-AAA-CTTAAA
8913320 CCTAA
1 CCTAA
8913325 GCTTTAAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
12 7 0.25
13 12 0.43
14 9 0.32
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (12 bp):
CCTAAACTTAAA
Found at i:8913306 original size:26 final size:27
Alignment explanation
Indices: 8913264--8913324 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 27
8913254 CTTAAATCCC
8913264 AAAACC-AAACTCCAAACC-CTAAACAT
1 AAAACCTAAACTCCAAACCTC-AAACAT
* *
8913290 AAAACCTAAACT-TAAACCTCAAACCT
1 AAAACCTAAACTCCAAACCTCAAACAT
*
8913316 TAAACCTAA
1 AAAACCTAA
8913325 GCTTTAAATC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 24 0.80
27 6 0.20
ACGTcount: A:0.52, C:0.31, G:0.00, T:0.16
Consensus pattern (27 bp):
AAAACCTAAACTCCAAACCTCAAACAT
Found at i:8913377 original size:19 final size:18
Alignment explanation
Indices: 8913341--8913469 Score: 80
Period size: 20 Copynumber: 6.7 Consensus size: 18
8913331 AATCCCAAAA
*
8913341 CCAAACCTTAAAACCCTAAC
1 CCAAACCCT-AAA-CCTAAC
*
8913361 CTCAAATCCTAAACCTAAAC
1 C-CAAACCCTAAACCT-AAC
* *
8913381 CCTAACCCTAAACCTAAA
1 CCAAACCCTAAACCTAAC
* *
8913399 CTAAAACC-AAACCCTTAAC
1 CCAAACCCTAAA-CC-TAAC
* *
8913418 AACAAACCCCAAACCTAAAC
1 -CCAAACCCTAAACCT-AAC
8913438 CCTAAACCCTAAACCCTAAC
1 CC-AAACCCTAAA-CCTAAC
*
8913458 CTAAACCCTAAA
1 CCAAACCCTAAA
8913470 ACTATTGCAA
Statistics
Matches: 85, Mismatches: 15, Indels: 19
0.71 0.13 0.16
Matches are distributed among these distances:
17 3 0.04
18 9 0.11
19 30 0.35
20 31 0.36
21 12 0.14
ACGTcount: A:0.47, C:0.39, G:0.00, T:0.15
Consensus pattern (18 bp):
CCAAACCCTAAACCTAAC
Found at i:8913439 original size:13 final size:13
Alignment explanation
Indices: 8913421--8913465 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
8913411 CCTTAACAAC
8913421 AAACCCCAAACCT
1 AAACCCCAAACCT
*
8913434 AAACCCTAAACCCT
1 AAACCCCAAA-CCT
*
8913448 AAA-CCCTAACCT
1 AAACCCCAAACCT
8913460 AAACCC
1 AAACCC
8913466 TAAAACTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
12 6 0.22
13 15 0.56
14 6 0.22
ACGTcount: A:0.44, C:0.44, G:0.00, T:0.11
Consensus pattern (13 bp):
AAACCCCAAACCT
Found at i:8913442 original size:64 final size:63
Alignment explanation
Indices: 8913337--8913463 Score: 170
Period size: 64 Copynumber: 2.0 Consensus size: 63
8913327 TTTAAATCCC
* *
8913337 AAAACCAAACCTTAAAACCCTAACCTCAAATCCTAAACCTAAACCCT-AACCCTAAACCTAAACT
1 AAAACCAAACCTTAAAA-CCAAACCCCAAATCCTAAACCTAAACCCTAAACCCT-AACCTAAACT
8913401 AAAACCAAACCCTTAACAA-CAAACCCCAAA-CCTAAACCCTAAACCCTAAACCCTAACCTAAAC
1 AAAACCAAA-CCTTAA-AACCAAACCCCAAATCCTAAA-CCTAAACCCTAAACCCTAACCTAAAC
8913464 CCTAAAACTA
Statistics
Matches: 57, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
63 6 0.11
64 37 0.65
65 12 0.21
66 2 0.04
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (63 bp):
AAAACCAAACCTTAAAACCAAACCCCAAATCCTAAACCTAAACCCTAAACCCTAACCTAAACT
Found at i:8913469 original size:26 final size:25
Alignment explanation
Indices: 8913351--8913468 Score: 87
Period size: 26 Copynumber: 4.4 Consensus size: 25
8913341 CCAAACCTTA
*
8913351 AAACCCTAACCTCAAATCCTAAACCT
1 AAACCCTAACCT-AAACCCTAAACCT
8913377 AAACCCTAACCCTAAACCTAAACTAAAACC-
1 AAACCCTAA-CCTAAACC----CT-AAACCT
** *
8913407 AAACCCTTAACAACAAACCCCAAACCT
1 AAACCC-TAAC-CTAAACCCTAAACCT
8913434 AAACCCTAAACCCTAAACCCT-AACCT
1 AAACCCT-AA-CCTAAACCCTAAACCT
8913460 AAACCCTAA
1 AAACCCTAA
8913469 AACTATTGCA
Statistics
Matches: 74, Mismatches: 7, Indels: 23
0.71 0.07 0.22
Matches are distributed among these distances:
25 2 0.03
26 31 0.42
27 18 0.24
28 1 0.01
30 9 0.12
31 13 0.18
ACGTcount: A:0.47, C:0.39, G:0.00, T:0.14
Consensus pattern (25 bp):
AAACCCTAACCTAAACCCTAAACCT
Found at i:8913488 original size:7 final size:7
Alignment explanation
Indices: 8913225--8913469 Score: 106
Period size: 7 Copynumber: 37.4 Consensus size: 7
8913215 ACCCCAAAAG
8913225 AAACCCT
1 AAACCCT
*
8913232 AAACCCC
1 AAACCCT
8913239 AAACCCT
1 AAACCCT
8913246 -AA--CT
1 AAACCCT
*
8913250 AAACCTT
1 AAACCCT
8913257 AAATCCC-
1 AAA-CCCT
*
8913264 AAAACC-
1 AAACCCT
8913270 AAACTCC-
1 AAAC-CCT
8913277 AAACCCT
1 AAACCCT
*
8913284 AAA-CAT
1 AAACCCT
*
8913290 AAAACCT
1 AAACCCT
*
8913297 AAA-CTT
1 AAACCCT
8913303 AAA-CCT
1 AAACCCT
*
8913309 CAAACCTT
1 -AAACCCT
8913317 AAA-CCT
1 AAACCCT
* **
8913323 AAGCTTT
1 AAACCCT
8913330 AAATCCC-
1 AAA-CCCT
*
8913337 AAAACC-
1 AAACCCT
*
8913343 AAACCTT
1 AAACCCT
8913350 AAAACCCT
1 -AAACCCT
8913358 -AA-CCT
1 AAACCCT
*
8913363 CAAATCCT
1 -AAACCCT
8913371 AAA-CCT
1 AAACCCT
8913377 AAACCCT
1 AAACCCT
8913384 -AACCCT
1 AAACCCT
8913390 AAA-CCT
1 AAACCCT
8913396 AAA--CT
1 AAACCCT
*
8913401 AAAACC-
1 AAACCCT
8913407 AAACCCT
1 AAACCCT
* *
8913414 TAACAAC-
1 AAAC-CCT
*
8913421 AAACCCC
1 AAACCCT
8913428 AAA-CCT
1 AAACCCT
8913434 AAACCCT
1 AAACCCT
8913441 AAACCCT
1 AAACCCT
8913448 AAACCCT
1 AAACCCT
8913455 -AA-CCT
1 AAACCCT
8913460 AAACCCT
1 AAACCCT
8913467 AAA
1 AAA
8913470 ACTATTGCAA
Statistics
Matches: 184, Mismatches: 28, Indels: 52
0.70 0.11 0.20
Matches are distributed among these distances:
4 2 0.01
5 13 0.07
6 66 0.36
7 88 0.48
8 15 0.08
ACGTcount: A:0.47, C:0.36, G:0.00, T:0.16
Consensus pattern (7 bp):
AAACCCT
Found at i:8922531 original size:167 final size:167
Alignment explanation
Indices: 8922251--8922581 Score: 536
Period size: 167 Copynumber: 2.0 Consensus size: 167
8922241 CTTCTTAAGC
*
8922251 TTTTGGCTTTTTTCTTCATGTAGGCATCTATTTCCAAGTCACAAGTGAAGTTCCAATCCTTTTCC
1 TTTTGGCTTTTTGCTTCATGTAGGCATCTATTTCCAAGTCACAAGTGAAGTTCCAATCCTTTTCC
* * * * *
8922316 TTTATTTGCTATTCACCCATAATTGTAGAAATATGATTCTTATGGTCTTGTAATTGCTACTTCAA
66 TTTATTTGCTATTCACCCATAATTGCAGAAATATGATTCTTATGGTCTTGCAACTACTACTCCAA
*
8922381 CCCTTGGATTACTTGGCGGAGTGAATCTTTTTCAAAG
131 CCCTTGGATTACTTGGCGAAGTGAATCTTTTTCAAAG
* *
8922418 TTTTGGCTTTTTGCTTCATGTAGGCATCTATTTCCAAGTCGCAATTGAAGTTCCAATCCTTTTCC
1 TTTTGGCTTTTTGCTTCATGTAGGCATCTATTTCCAAGTCACAAGTGAAGTTCCAATCCTTTTCC
*
8922483 TTTATTTGCTATTCACCCATAATTGCAGAAATATGATTCTTGTGGTCTTGCAACTACTACTCCAA
66 TTTATTTGCTATTCACCCATAATTGCAGAAATATGATTCTTATGGTCTTGCAACTACTACTCCAA
* * **
8922548 CTCTTGGATTACTTGGTGAAGTGTCTCTTTTTCA
131 CCCTTGGATTACTTGGCGAAGTGAATCTTTTTCA
8922582 TATAACATTT
Statistics
Matches: 150, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
167 150 1.00
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.42
Consensus pattern (167 bp):
TTTTGGCTTTTTGCTTCATGTAGGCATCTATTTCCAAGTCACAAGTGAAGTTCCAATCCTTTTCC
TTTATTTGCTATTCACCCATAATTGCAGAAATATGATTCTTATGGTCTTGCAACTACTACTCCAA
CCCTTGGATTACTTGGCGAAGTGAATCTTTTTCAAAG
Found at i:8924634 original size:12 final size:12
Alignment explanation
Indices: 8924617--8924644 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8924607 TTTTAAAAAA
8924617 TTTTGCTCTTTT
1 TTTTGCTCTTTT
8924629 TTTTGCTCTTTT
1 TTTTGCTCTTTT
8924641 TTTT
1 TTTT
8924645 TTTAGAATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.14, G:0.07, T:0.79
Consensus pattern (12 bp):
TTTTGCTCTTTT
Found at i:8926668 original size:113 final size:114
Alignment explanation
Indices: 8926466--8926680 Score: 344
Period size: 113 Copynumber: 1.9 Consensus size: 114
8926456 TCACATAGGC
*
8926466 TATATTGCAAGGAAAAATAGCTTAAGAAATTCATGATTTTTTGCTCTTTAGAATTCTTCTAATTG
1 TATATTGCAAGGAAAAATAGCTTAAGAAATTCATGATTTTTTGCTCTTTAGAATTCTCCTAATTG
*
8926531 TTTAAGCTTTTAAAGGGTTAACATGACCATTTTATACTCTTTAATTGGT
66 TTTAAGCTTTTAAAGGGCTAACATGACCATTTTATACTCTTTAATTGGT
* * * *
8926580 TATATTGCAAGGAAAAGTAGCTTAGGGAATTTA-GATTTTTTGCTCTTTAGAATTCTCCTAATTG
1 TATATTGCAAGGAAAAATAGCTTAAGAAATTCATGATTTTTTGCTCTTTAGAATTCTCCTAATTG
*
8926644 TTTCAA-CTTTTAAAGGGCTGACATGACCATTTTATAC
66 TTT-AAGCTTTTAAAGGGCTAACATGACCATTTTATAC
8926681 CCCTTGATTG
Statistics
Matches: 93, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
113 62 0.67
114 31 0.33
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (114 bp):
TATATTGCAAGGAAAAATAGCTTAAGAAATTCATGATTTTTTGCTCTTTAGAATTCTCCTAATTG
TTTAAGCTTTTAAAGGGCTAACATGACCATTTTATACTCTTTAATTGGT
Found at i:8928401 original size:21 final size:22
Alignment explanation
Indices: 8928361--8928406 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
8928351 TCTTTAAAAT
8928361 TTTCATGTTGAATCAATTTTAA
1 TTTCATGTTGAATCAATTTTAA
* *
8928383 TTTCTTGTT-AATCATTTTTAA
1 TTTCATGTTGAATCAATTTTAA
8928404 TTT
1 TTT
8928407 TTATTAGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.26, C:0.09, G:0.07, T:0.59
Consensus pattern (22 bp):
TTTCATGTTGAATCAATTTTAA
Found at i:8933023 original size:62 final size:62
Alignment explanation
Indices: 8932850--8933026 Score: 183
Period size: 62 Copynumber: 2.8 Consensus size: 62
8932840 TTTTTCTTTT
* * * * * **
8932850 TTTTAATTAAATGTTATAATTGAATAAAGCCAAACTTTTTAAATGAAAACAATTATTGTGTTTC
1 TTTTAATTAAACGTTATAATTGAGTAAAG-TAAA-TTTTTAAATGAAACCAATTACTGCATTTC
* * * * * ** *
8932914 TTTTAGTTAAACATTGTTATTGAGTAAGGTAAATTTTTAAACAAAACCCATTACTGCATTTC
1 TTTTAATTAAACGTTATAATTGAGTAAAGTAAATTTTTAAATGAAACCAATTACTGCATTTC
**
8932976 TTTTAATTAAACGCCATAATTGAGTAAAGTAAATTTTTAAATGAAACCAAT
1 TTTTAATTAAACGTTATAATTGAGTAAAGTAAATTTTTAAATGAAACCAAT
8933027 AATAGTGTTT
Statistics
Matches: 88, Mismatches: 25, Indels: 2
0.77 0.22 0.02
Matches are distributed among these distances:
62 63 0.72
63 3 0.03
64 22 0.25
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (62 bp):
TTTTAATTAAACGTTATAATTGAGTAAAGTAAATTTTTAAATGAAACCAATTACTGCATTTC
Found at i:8933996 original size:144 final size:142
Alignment explanation
Indices: 8933387--8933996 Score: 497
Period size: 144 Copynumber: 4.2 Consensus size: 142
8933377 AAATGCCCCC
* *
8933387 TTAGAGATATTTTTGTAATTTGACTTTC-TCAAGGTTAGTTTTTTGTGAAAAGCTCCAAATTGTG
1 TTAGGGATATTTTTGTAATTTGACTTTCTTGAA-GTTA-TTTTTT-TGAAAAGCTCCAAATTGTG
* * *
8933451 TTTTGATATTATTT-TCTGATTTTTGATGCATTAAGAACCTTGATTGCACCTCGAAAAGATTAAA
63 TTTTGATATTATTTCT-TGATTTTTGATGCAATAAAAACCTTGATTACACCTCGAAAAGATTAAA
8933515 ATTACCAAAATATCCTT
127 ATTACCAAAATAT-CTT
* * * ** * * **
8933532 TAAGGGA-ATTTTTATAATTTCACTTTCTTGTGGTTATTTTTTT-AAAAGCCCCAGATCATG-TT
1 TTAGGGATATTTTTGTAATTTGACTTTCTTGAAGTTATTTTTTTGAAAAGCTCCAAATTGTGTTT
* * * * **
8933594 TGATATCATTTTTTGATTTTTTTTTATGCATTAAAAACCTTGATTACACCTTTAAAA-AGTTAAA
66 TGATATTATTTCTTGA---TTTTTGATGCAATAAAAACCTTGATTACACCTCGAAAAGA-TTAAA
*
8933658 ATTATCAAAATAATC-T
127 ATTACCAAAAT-ATCTT
* * * * * * ** ** * *
8933674 TTGGGGATATTTTCGTAATTTGACTTTC-TCAAGGTCAACTTTCTACAAGAAGCTTGAGATTGTT
1 TTAGGGATATTTTTGTAATTTGACTTTCTTGAA-GT-TATTTTTTTGAA-AAGCTCCAAATTGTG
* * * *
8933738 TTTTGATATTATTTCATGAATTTTGATG-AATTGAAAACCTTGATTACACCTCAAAAAGATTAAA
63 TTTTGATATTATTTCTTGATTTTTGATGCAA-TAAAAACCTTGATTACACCTCGAAAAGATTAAA
8933802 ATTACCAAAATA-CTTT
127 ATTACCAAAATATC-TT
* * *
8933818 TTAAGGG-TATTTTCGTAATTTAACTTT-TTCGAAGTTGATTTTTTGTGAAAAGCTACAAATTGT
1 TT-AGGGATATTTTTGTAATTTGACTTTCTT-GAAGTT-ATTTTTT-TGAAAAGCTCCAAATTGT
* * * * * * * * *
8933881 GTTTTGATATTATGTCTTGATTTTTTATGCAAAAAAAACCCTGATTGCACCTTGAAAGGGTTGAA
62 GTTTTGATATTATTTCTTGATTTTTGATGCAATAAAAACCTTGATTACACCTCGAAAAGATTAAA
*
8933946 ATTACCAAAATGTCTT
127 ATTACCAAAATATCTT
* *
8933962 TTATGGATATTTTTGTAATTTGACATTCTTGAAGT
1 TTAGGGATATTTTTGTAATTTGACTTTCTTGAAGT
8933997 CAAAACTCCA
Statistics
Matches: 363, Mismatches: 76, Indels: 53
0.74 0.15 0.11
Matches are distributed among these distances:
140 15 0.04
141 14 0.04
142 10 0.03
143 79 0.22
144 200 0.55
145 21 0.06
146 9 0.02
147 15 0.04
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.43
Consensus pattern (142 bp):
TTAGGGATATTTTTGTAATTTGACTTTCTTGAAGTTATTTTTTTGAAAAGCTCCAAATTGTGTTT
TGATATTATTTCTTGATTTTTGATGCAATAAAAACCTTGATTACACCTCGAAAAGATTAAAATTA
CCAAAATATCTT
Found at i:8935498 original size:20 final size:19
Alignment explanation
Indices: 8935475--8935606 Score: 70
Period size: 20 Copynumber: 6.7 Consensus size: 19
8935465 AACCCCAAGC
8935475 CAAACCCCCAAACCCTAACT
1 CAAA-CCCCAAACCCTAACT
*
8935495 CAAACCCTAAACCCTAAACT
1 CAAACCCCAAACCCT-AACT
* * * ** *
8935515 TAAATCCTAAA-TTTAACC
1 CAAACCCCAAACCCTAACT
*
8935533 CAAACCCTCAAACCTTAAACT
1 CAAACCC-CAAACCCT-AACT
* * * *
8935554 GAATCCCTAAATCCC-AAAT
1 CAAACCCCAAA-CCCTAACT
*
8935573 CAAAACCCCAAACCTTAAGCT
1 C-AAACCCCAAACCCTAA-CT
8935594 CAAACCCCAAACC
1 CAAACCCCAAACC
8935607 AAAACTTCAA
Statistics
Matches: 83, Mismatches: 21, Indels: 16
0.69 0.17 0.13
Matches are distributed among these distances:
18 8 0.10
19 19 0.23
20 44 0.53
21 12 0.14
ACGTcount: A:0.43, C:0.39, G:0.02, T:0.17
Consensus pattern (19 bp):
CAAACCCCAAACCCTAACT
Found at i:8935524 original size:32 final size:33
Alignment explanation
Indices: 8935488--8935551 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 33
8935478 ACCCCCAAAC
*
8935488 CCTAACTCAAACCCTAAACCCT-AAA-CTTAAAT
1 CCTAAATCAAACCC-AAACCCTCAAACCTTAAAT
**
8935520 CCTAAATTTAACCCAAACCCTCAAACCTTAAA
1 CCTAAATCAAACCCAAACCCTCAAACCTTAAA
8935552 CTGAATCCCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 7 0.26
32 14 0.52
33 6 0.22
ACGTcount: A:0.44, C:0.34, G:0.00, T:0.22
Consensus pattern (33 bp):
CCTAAATCAAACCCAAACCCTCAAACCTTAAAT
Found at i:8935559 original size:38 final size:39
Alignment explanation
Indices: 8935490--8935565 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
8935480 CCCCAAACCC
*
8935490 TAACTCAAACCCTAAACCCTAAACTTAAAT-CCTAAATT
1 TAACCCAAACCCTAAACCCTAAACTTAAATCCCTAAATT
* *
8935528 TAACCCAAACCCTCAAACCTTAAAC-TGAATCCCTAAAT
1 TAACCCAAACCCT-AAACCCTAAACTTAAATCCCTAAAT
8935566 CCCAAATCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
38 16 0.48
39 17 0.52
ACGTcount: A:0.43, C:0.32, G:0.01, T:0.24
Consensus pattern (39 bp):
TAACCCAAACCCTAAACCCTAAACTTAAATCCCTAAATT
Found at i:8935616 original size:20 final size:20
Alignment explanation
Indices: 8935575--8935618 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
8935565 TCCCAAATCA
* *
8935575 AAACCCCAAACCTTAAGCTC
1 AAACCCCAAACCTAAAACTC
8935595 AAACCCCAAACC-AAAACTTC
1 AAACCCCAAACCTAAAAC-TC
8935615 AAAC
1 AAAC
8935619 TCAAACCCTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.48, C:0.39, G:0.02, T:0.11
Consensus pattern (20 bp):
AAACCCCAAACCTAAAACTC
Found at i:8935820 original size:20 final size:20
Alignment explanation
Indices: 8935797--8935834 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
8935787 CCCCCAAAAC
*
8935797 CAAACCCTAACCTAAACCTG
1 CAAACCCTAAACTAAACCTG
8935817 CAAACCCTAAACTAAACC
1 CAAACCCTAAACTAAACC
8935835 CCAAATTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.39, G:0.03, T:0.13
Consensus pattern (20 bp):
CAAACCCTAAACTAAACCTG
Found at i:8935874 original size:21 final size:21
Alignment explanation
Indices: 8935719--8935773 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
8935709 TTGAACCGAA
*
8935719 CTAAACCTAAACCCTCAAACC
1 CTAAACTTAAACCCTCAAACC
**
8935740 CT-AACTTAAACTGTCAAACC
1 CTAAACTTAAACCCTCAAACC
8935760 CTAAACTTAAACCC
1 CTAAACTTAAACCC
8935774 CAAGCCAACC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.42, C:0.36, G:0.02, T:0.20
Consensus pattern (21 bp):
CTAAACTTAAACCCTCAAACC
Found at i:8935915 original size:20 final size:21
Alignment explanation
Indices: 8935887--8935927 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
8935877 AATTGCTTAA
* *
8935887 ACCCTAAACCGAACC-CAAAC
1 ACCCCAAACCAAACCTCAAAC
8935907 ACCCCAAACCAAACCTCAAAC
1 ACCCCAAACCAAACCTCAAAC
8935928 CAAATCCCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.46, C:0.46, G:0.02, T:0.05
Consensus pattern (21 bp):
ACCCCAAACCAAACCTCAAAC
Found at i:8936550 original size:30 final size:31
Alignment explanation
Indices: 8936509--8936583 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 31
8936499 AATAATTTAT
8936509 TTTGTTTTTCAAGAATTCAAA-AACAAAATAA
1 TTTG-TTTTCAAGAATTCAAAGAACAAAATAA
* ** *
8936540 TTTGTTTTCAA-AATTTAAAGTTCAAAATGA
1 TTTGTTTTCAAGAATTCAAAGAACAAAATAA
*
8936570 TTTGATTTCAAGAA
1 TTTGTTTTCAAGAA
8936584 ATACTTTTGG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 7 0.19
30 24 0.65
31 6 0.16
ACGTcount: A:0.43, C:0.08, G:0.09, T:0.40
Consensus pattern (31 bp):
TTTGTTTTCAAGAATTCAAAGAACAAAATAA
Found at i:8938336 original size:2 final size:2
Alignment explanation
Indices: 8938329--8938355 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8938319 TAAAAGTAGT
8938329 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8938356 CAATTGAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8938728 original size:22 final size:22
Alignment explanation
Indices: 8938698--8938752 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
8938688 ATTTTTATTT
*
8938698 ATTATAATAAAAATAAGTAATA
1 ATTAAAATAAAAATAAGTAATA
* * * *
8938720 ATTAAAATAATATTAATTCATA
1 ATTAAAATAAAAATAAGTAATA
*
8938742 ATAAAAATAAA
1 ATTAAAATAAA
8938753 TGATAAGCAT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (22 bp):
ATTAAAATAAAAATAAGTAATA
Found at i:8946719 original size:16 final size:16
Alignment explanation
Indices: 8946694--8946726 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8946684 TGATAAATAA
8946694 ATGATAATGATGATTT
1 ATGATAATGATGATTT
*
8946710 ATGATGATGATGATTT
1 ATGATAATGATGATTT
8946726 A
1 A
8946727 CAATGATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.21, T:0.42
Consensus pattern (16 bp):
ATGATAATGATGATTT
Found at i:8946732 original size:16 final size:16
Alignment explanation
Indices: 8946700--8946733 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8946690 ATAAATGATA
**
8946700 ATGATGATTTATGATG
1 ATGATGATTTACAATG
8946716 ATGATGATTTACAATG
1 ATGATGATTTACAATG
8946732 AT
1 AT
8946734 TTTAATGATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.03, G:0.21, T:0.41
Consensus pattern (16 bp):
ATGATGATTTACAATG
Found at i:8952094 original size:18 final size:20
Alignment explanation
Indices: 8952059--8952101 Score: 72
Period size: 18 Copynumber: 2.2 Consensus size: 20
8952049 CCATTCTTTC
8952059 TTTTAGATTTTCTTTTTTAT
1 TTTTAGATTTTCTTTTTTAT
8952079 TTTTAG-TTTT-TTTTTTAT
1 TTTTAGATTTTCTTTTTTAT
8952097 TTTTA
1 TTTTA
8952102 AAAAATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 13 0.57
19 4 0.17
20 6 0.26
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.79
Consensus pattern (20 bp):
TTTTAGATTTTCTTTTTTAT
Found at i:8952534 original size:12 final size:12
Alignment explanation
Indices: 8952519--8952543 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8952509 AAAAACATAA
8952519 TTAAATCGAGAT
1 TTAAATCGAGAT
8952531 TTAAATCGAGAT
1 TTAAATCGAGAT
8952543 T
1 T
8952544 ACACTTATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (12 bp):
TTAAATCGAGAT
Found at i:8955069 original size:44 final size:44
Alignment explanation
Indices: 8955020--8955106 Score: 165
Period size: 44 Copynumber: 2.0 Consensus size: 44
8955010 AACTGCCAGC
*
8955020 ATGATTGGTTAACTCTATGGAAGAAGTTGAAGTAGCAGCATAGA
1 ATGATTGGTTAACTCTATAGAAGAAGTTGAAGTAGCAGCATAGA
8955064 ATGATTGGTTAACTCTATAGAAGAAGTTGAAGTAGCAGCATAG
1 ATGATTGGTTAACTCTATAGAAGAAGTTGAAGTAGCAGCATAG
8955107 CAACTAAGTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.37, C:0.09, G:0.26, T:0.28
Consensus pattern (44 bp):
ATGATTGGTTAACTCTATAGAAGAAGTTGAAGTAGCAGCATAGA
Found at i:8960809 original size:30 final size:30
Alignment explanation
Indices: 8960697--8960805 Score: 121
Period size: 30 Copynumber: 3.6 Consensus size: 30
8960687 ATTGATTTAT
* *
8960697 ATTAAATGTTTATTTAGGTACAAATTAAAT
1 ATTAAAGGTTTATTTAGGTACAAATTAAAG
* *
8960727 ATTAAGGGTTTATTTAGATACAAATTAAAG
1 ATTAAAGGTTTATTTAGGTACAAATTAAAG
* * *
8960757 TTTAAAGATTTATTT-GGATGCAAATTAAAG
1 ATTAAAGGTTTATTTAGG-TACAAATTAAAG
* *
8960787 ACTAAAGGCTTATTTAGGT
1 ATTAAAGGTTTATTTAGGT
8960806 GCAATACAAG
Statistics
Matches: 64, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
29 1 0.02
30 61 0.95
31 2 0.03
ACGTcount: A:0.40, C:0.05, G:0.16, T:0.39
Consensus pattern (30 bp):
ATTAAAGGTTTATTTAGGTACAAATTAAAG
Found at i:8961650 original size:103 final size:104
Alignment explanation
Indices: 8961531--8961728 Score: 301
Period size: 103 Copynumber: 1.9 Consensus size: 104
8961521 TGTAGTAAAG
* * *
8961531 GTATAAACTATATTAAGGATAGGTATATATTTCATAATAAACATATTCCATGAAAGTTCAAAATT
1 GTATAAACTATATTAAGGATAGGTATATATTTCATAATAAACACATTCCAAGAAAGTTCAAAACT
* * *
8961596 TTCATTAGCATTTTTTTTC-ACAA-TTTTGGCAAGAAAT
66 TTCATCAGAATTTTTGTTCAACAACTTTTGGCAAGAAAT
* *
8961633 GTATAAAACTATATTAAGGATAGGTATATATTTCGTAATAAACACATTCCAAGAAAGTTCATAAC
1 GTAT-AAACTATATTAAGGATAGGTATATATTTCATAATAAACACATTCCAAGAAAGTTCAAAAC
8961698 TTTCATCAGAATTTTTGTTCAACAACTTTTG
65 TTTCATCAGAATTTTTGTTCAACAACTTTTG
8961729 AAGAGGCAAA
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
102 4 0.05
103 72 0.85
104 4 0.05
105 5 0.06
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (104 bp):
GTATAAACTATATTAAGGATAGGTATATATTTCATAATAAACACATTCCAAGAAAGTTCAAAACT
TTCATCAGAATTTTTGTTCAACAACTTTTGGCAAGAAAT
Found at i:8969346 original size:21 final size:20
Alignment explanation
Indices: 8969322--8969362 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
8969312 TATTAATTTT
*
8969322 TTATATTATTTTTTCAATATA
1 TTATATTATTCTTT-AATATA
8969343 TTATA-TATTCTTTAATATA
1 TTATATTATTCTTTAATATA
8969362 T
1 T
8969363 ATTTATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 7 0.37
21 5 0.26
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (20 bp):
TTATATTATTCTTTAATATA
Found at i:8970159 original size:16 final size:16
Alignment explanation
Indices: 8970124--8970167 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
8970114 TCCAAAAATC
* *
8970124 TCATGCAAATAT-ATA
1 TCATGCAAAAATAACA
8970139 TCATGCAAAAATAACA
1 TCATGCAAAAATAACA
*
8970155 TCATGCAATAATA
1 TCATGCAAAAATA
8970168 TAAAATATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 11 0.44
16 14 0.56
ACGTcount: A:0.50, C:0.16, G:0.07, T:0.27
Consensus pattern (16 bp):
TCATGCAAAAATAACA
Found at i:8970312 original size:16 final size:17
Alignment explanation
Indices: 8970278--8970316 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
8970268 TTCACAAAAC
*
8970278 AAAAAATAAAATACCAA
1 AAAAAAAAAAATACCAA
*
8970295 AAAAAAAAAAAT-CTAA
1 AAAAAAAAAAATACCAA
8970311 AAAAAA
1 AAAAAA
8970317 GTCAAACCTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.82, C:0.08, G:0.00, T:0.10
Consensus pattern (17 bp):
AAAAAAAAAAATACCAA
Found at i:8970864 original size:20 final size:20
Alignment explanation
Indices: 8970835--8970879 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
8970825 TGTGGATTAA
*
8970835 TTTCTATTTTAGTTTG-GATT
1 TTTCTATTTTAGCTTGAG-TT
*
8970855 TTTCTGTTTTAGCTTGAGTT
1 TTTCTATTTTAGCTTGAGTT
8970875 TTTCT
1 TTTCT
8970880 TTGGATTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.11, C:0.09, G:0.16, T:0.64
Consensus pattern (20 bp):
TTTCTATTTTAGCTTGAGTT
Found at i:8972993 original size:2 final size:2
Alignment explanation
Indices: 8972986--8973012 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8972976 ATGTTTATTT
8972986 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8973013 CATAACTTTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8973281 original size:21 final size:20
Alignment explanation
Indices: 8973243--8973302 Score: 70
Period size: 19 Copynumber: 3.0 Consensus size: 20
8973233 ATTTATTAAT
*
8973243 TAATTATTTA-ATAATATAA
1 TAATTAATTATATAATATAA
8973262 TAATTAATTATATGAATATAA
1 TAATTAATTATAT-AATATAA
* *
8973283 TATTTTATTATA-AATATAA
1 TAATTAATTATATAATATAA
8973302 T
1 T
8973303 TTTAAAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 17 0.47
20 2 0.06
21 17 0.47
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
TAATTAATTATATAATATAA
Found at i:8979531 original size:40 final size:40
Alignment explanation
Indices: 8979481--8979620 Score: 120
Period size: 40 Copynumber: 3.3 Consensus size: 40
8979471 GGAGGGGGGT
8979481 GGGA-GGATTGGGTGTGGTGGGGCGTTGGGGGGGAAGGTG
1 GGGAGGGATTGGGTGTGGTGGGGCGTTGGGGGGGAAGGTG
* * *
8979520 GGGAGAGATTGGGTGTGGATTGGGTGTGGTAGGGTGTTGGGAGGAAGGTG
1 GGGAGGGATTGGGTGTGG--TGGG-G-CGT----TG--GGGGGGAAGGTG
** *
8979570 GGGAGGGATTGGGTGTGGTGGGATGTTGGGAGGGAAGGTG
1 GGGAGGGATTGGGTGTGGTGGGGCGTTGGGGGGGAAGGTG
*
8979610 GAGAGGGATTG
1 GGGAGGGATTG
8979621 ATGGGGTGGG
Statistics
Matches: 81, Mismatches: 9, Indels: 21
0.73 0.08 0.19
Matches are distributed among these distances:
39 4 0.05
40 32 0.40
42 6 0.07
43 1 0.01
44 2 0.02
46 2 0.02
48 6 0.07
50 28 0.35
ACGTcount: A:0.15, C:0.01, G:0.61, T:0.23
Consensus pattern (40 bp):
GGGAGGGATTGGGTGTGGTGGGGCGTTGGGGGGGAAGGTG
Found at i:8979579 original size:39 final size:40
Alignment explanation
Indices: 8979536--8979620 Score: 138
Period size: 39 Copynumber: 2.1 Consensus size: 40
8979526 GATTGGGTGT
*
8979536 GGATTGGGTGTGGTAGGG-TGTTGGGA-GGAAGGTGGGGAG
1 GGATTGGGTGTGGT-GGGATGTTGGGAGGGAAGGTGGAGAG
8979575 GGATTGGGTGTGGTGGGATGTTGGGAGGGAAGGTGGAGAG
1 GGATTGGGTGTGGTGGGATGTTGGGAGGGAAGGTGGAGAG
8979615 GGATTG
1 GGATTG
8979621 ATGGGGTGGG
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
38 3 0.07
39 22 0.51
40 18 0.42
ACGTcount: A:0.16, C:0.00, G:0.60, T:0.24
Consensus pattern (40 bp):
GGATTGGGTGTGGTGGGATGTTGGGAGGGAAGGTGGAGAG
Found at i:8979582 original size:50 final size:51
Alignment explanation
Indices: 8979485--8979587 Score: 163
Period size: 50 Copynumber: 2.0 Consensus size: 51
8979475 GGGGGTGGGA
* *
8979485 GGATTGGGTGTGGTGGGGCGTTGGGGGGGAAGGTGGGGAGAGATTGGGTGT
1 GGATTGGGTGTGGTAGGGCGTTGGGGAGGAAGGTGGGGAGAGATTGGGTGT
* *
8979536 GGATTGGGTGTGGTAGGGTGTT-GGGAGGAAGGTGGGGAGGGATTGGGTGT
1 GGATTGGGTGTGGTAGGGCGTTGGGGAGGAAGGTGGGGAGAGATTGGGTGT
8979586 GG
1 GG
8979588 TGGGATGTTG
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
50 28 0.58
51 20 0.42
ACGTcount: A:0.13, C:0.01, G:0.62, T:0.24
Consensus pattern (51 bp):
GGATTGGGTGTGGTAGGGCGTTGGGGAGGAAGGTGGGGAGAGATTGGGTGT
Found at i:8979629 original size:39 final size:39
Alignment explanation
Indices: 8979536--8979630 Score: 113
Period size: 39 Copynumber: 2.4 Consensus size: 39
8979526 GATTGGGTGT
* * *
8979536 GGATTGGGTGTGGTAGGG-TGTTGGGAGGAAGGTGGGGAG
1 GGATTGGATGGGGT-GGGATGTTGGGAGGAAGGTGGAGAG
* *
8979575 GGATTGGGTGTGGTGGGATGTTGGGAGGGAAGGTGGAGAG
1 GGATTGGATGGGGTGGGATGTTGGGA-GGAAGGTGGAGAG
8979615 GGATT-GATGGGGTGGG
1 GGATTGGATGGGGTGGG
8979631 GAGGGATTGA
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
38 3 0.06
39 31 0.61
40 17 0.33
ACGTcount: A:0.16, C:0.00, G:0.61, T:0.23
Consensus pattern (39 bp):
GGATTGGATGGGGTGGGATGTTGGGAGGAAGGTGGAGAG
Found at i:8980142 original size:26 final size:26
Alignment explanation
Indices: 8980114--8980162 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
8980104 TAAAAAATAA
*
8980114 AAAATATAGGTTTGAAAA-TTTTATT
1 AAAATATAAGTTTGAAAACTTTTATT
8980139 AAAATATAAGTTTGAAAACTTTTA
1 AAAATATAAGTTTGAAAACTTTTA
8980163 ATTTTTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.47, C:0.02, G:0.10, T:0.41
Consensus pattern (26 bp):
AAAATATAAGTTTGAAAACTTTTATT
Found at i:8980501 original size:25 final size:24
Alignment explanation
Indices: 8980445--8980502 Score: 64
Period size: 27 Copynumber: 2.3 Consensus size: 24
8980435 ATTAATTCTT
*
8980445 ATTATTTTTGTATAATTATTGAAG
1 ATTATTTTTATATAATTATTGAAG
8980469 ATTGTATTTATTATATAATTATTTGAAG
1 A-T-TATTT-TTATATAATTA-TTGAAG
8980497 -TTATTT
1 ATTATTT
8980503 GTGATAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
24 1 0.03
25 6 0.21
26 6 0.21
27 10 0.34
28 6 0.21
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (24 bp):
ATTATTTTTATATAATTATTGAAG
Found at i:8983565 original size:6 final size:6
Alignment explanation
Indices: 8983556--8983592 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
8983546 TTTAAGTCCA
* *
8983556 GATGAT GATGGT GATGGA GATGGT GATGGT GATGGT G
1 GATGGT GATGGT GATGGT GATGGT GATGGT GATGGT G
8983593 CGAATTTTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.22, C:0.00, G:0.49, T:0.30
Consensus pattern (6 bp):
GATGGT
Found at i:8983582 original size:18 final size:18
Alignment explanation
Indices: 8983555--8983590 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8983545 GTTTAAGTCC
8983555 AGATGATGATGGTGATGG
1 AGATGATGATGGTGATGG
*
8983573 AGATGGTGATGGTGATGG
1 AGATGATGATGGTGATGG
8983591 TGCGAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.47, T:0.28
Consensus pattern (18 bp):
AGATGATGATGGTGATGG
Found at i:8983959 original size:18 final size:18
Alignment explanation
Indices: 8983936--8984060 Score: 105
Period size: 18 Copynumber: 6.9 Consensus size: 18
8983926 ATGGTTATTA
8983936 TCCACCTCAAATGTATCC
1 TCCACCTCAAATGTATCC
*
8983954 TCCACCTCCTCAAATATATCC
1 TCCA---CCTCAAATGTATCC
*
8983975 TCCACCTCAAATGTATCAG
1 TCCACCTCAAATGTATC-C
* * *
8983994 T-TACCACAAATGTACCC
1 TCCACCTCAAATGTATCC
* * *
8984011 TCCATCACAAATGTATCA
1 TCCACCTCAAATGTATCC
*
8984029 T---CCTCAAATATATCC
1 TCCACCTCAAATGTATCC
8984044 TCCACCTCAAATGTATC
1 TCCACCTCAAATGTATC
8984061 AAGAACAAAG
Statistics
Matches: 83, Mismatches: 16, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
15 11 0.13
17 1 0.01
18 53 0.64
19 1 0.01
21 17 0.20
ACGTcount: A:0.32, C:0.35, G:0.05, T:0.28
Consensus pattern (18 bp):
TCCACCTCAAATGTATCC
Found at i:8983966 original size:21 final size:21
Alignment explanation
Indices: 8983940--8983982 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
8983930 TTATTATCCA
*
8983940 CCTCAAATGTATCCTCCACCT
1 CCTCAAATATATCCTCCACCT
8983961 CCTCAAATATATCCTCCACCT
1 CCTCAAATATATCCTCCACCT
8983982 C
1 C
8983983 AAATGTATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.44, G:0.02, T:0.28
Consensus pattern (21 bp):
CCTCAAATATATCCTCCACCT
Found at i:8986147 original size:2 final size:2
Alignment explanation
Indices: 8986130--8986175 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
8986120 GAGGGCTACA
* *
8986130 AC AC AT AC AT AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
8986172 AC AC
1 AC AC
8986176 TCTGGCGTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.46, G:0.00, T:0.04
Consensus pattern (2 bp):
AC
Found at i:8989385 original size:4 final size:4
Alignment explanation
Indices: 8989378--8989436 Score: 50
Period size: 4 Copynumber: 14.8 Consensus size: 4
8989368 ATTTTTATTT
* * * *
8989378 ATTC ATTC ATTC -TTT AATC A-TC ATGC ATTC ATATC ATGTC ATTC ATGC
1 ATTC ATTC ATTC ATTC ATTC ATTC ATTC ATTC AT-TC AT-TC ATTC ATTC
8989426 ATTC ATTC ATT
1 ATTC ATTC ATT
8989437 TTGATTATCT
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
3 5 0.11
4 31 0.70
5 8 0.18
ACGTcount: A:0.27, C:0.22, G:0.05, T:0.46
Consensus pattern (4 bp):
ATTC
Found at i:8995935 original size:20 final size:19
Alignment explanation
Indices: 8995892--8995935 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8995882 ATAATTTTTC
* * *
8995892 AAAACTAATGCAGTAAATT
1 AAAACTAATACACTAAAAT
8995911 AAAACTAATACACTAAACAT
1 AAAACTAATACACTAAA-AT
8995931 AAAAC
1 AAAAC
8995936 AATCCTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.59, C:0.16, G:0.05, T:0.20
Consensus pattern (19 bp):
AAAACTAATACACTAAAAT
Found at i:8996460 original size:30 final size:33
Alignment explanation
Indices: 8996407--8996468 Score: 94
Period size: 30 Copynumber: 2.0 Consensus size: 33
8996397 AGTGCACAAA
*
8996407 ATACAGAAGACTTAAACCAGTGCAGG-AAACTT
1 ATACAGAAGACTTAAAACAGTGCAGGCAAACTT
8996439 ATACAGAAG-C-TAAAACAGTGCAGGCAAACT
1 ATACAGAAGACTTAAAACAGTGCAGGCAAACT
8996469 GAAAATAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 13 0.46
31 6 0.21
32 9 0.32
ACGTcount: A:0.45, C:0.19, G:0.19, T:0.16
Consensus pattern (33 bp):
ATACAGAAGACTTAAAACAGTGCAGGCAAACTT
Found at i:8997698 original size:15 final size:16
Alignment explanation
Indices: 8997678--8997707 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8997668 TTTTCAATTG
8997678 ATCTTC-TAAATTCAA
1 ATCTTCATAAATTCAA
8997693 ATCTTCATAAATTCA
1 ATCTTCATAAATTCA
8997708 GCCATTTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (16 bp):
ATCTTCATAAATTCAA
Found at i:9005065 original size:3 final size:3
Alignment explanation
Indices: 9005059--9005111 Score: 76
Period size: 3 Copynumber: 18.7 Consensus size: 3
9005049 AAAAAATAGA
*
9005059 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT GAT AA- AA- AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9005104 AAT AAT AA
1 AAT AAT AA
9005112 ACTGTCTAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 6 0.13
3 40 0.87
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:9008384 original size:22 final size:21
Alignment explanation
Indices: 9008342--9008393 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
9008332 TCCGAAATTG
9008342 ATAAAATATTATTTTTTAAAT
1 ATAAAATATTATTTTTTAAAT
9008363 ATAAAATATTATTTTTTAAA-
1 ATAAAATATTATTTTTTAAAT
9008383 ATATAAATATT
1 ATA-AAATATT
9008394 TAAATATATA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 3 0.10
21 27 0.90
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATAAAATATTATTTTTTAAAT
Found at i:9008399 original size:8 final size:8
Alignment explanation
Indices: 9008379--9008419 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
9008369 TATTATTTTT
9008379 TAAA-ATA
1 TAAATATA
*
9008386 TAAATATT
1 TAAATATA
9008394 TAAATATA
1 TAAATATA
*
9008402 TAATTATA
1 TAAATATA
9008410 TAAATATA
1 TAAATATA
9008418 TA
1 TA
9008420 TAAACAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
7 4 0.14
8 25 0.86
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
TAAATATA
Found at i:9009770 original size:35 final size:35
Alignment explanation
Indices: 9009684--9009770 Score: 113
Period size: 35 Copynumber: 2.5 Consensus size: 35
9009674 TTTTTCTTTC
* * *
9009684 TTTTCTTCTTTTCTTTGCTTTTTCACCACTTTATTA
1 TTTT-TTCTTTTCTTTTCCTTTTCACAACTTTATTA
*
9009720 TTTTTTCTTTTCTTTTCCTTTTCACAACTTT-TTT
1 TTTTTTCTTTTCTTTTCCTTTTCACAACTTTATTA
9009754 TTCTTTTCTTTTCTTTT
1 TT-TTTTCTTTTCTTTT
9009771 GCAAGCTATC
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
34 4 0.09
35 38 0.83
36 4 0.09
ACGTcount: A:0.08, C:0.21, G:0.01, T:0.70
Consensus pattern (35 bp):
TTTTTTCTTTTCTTTTCCTTTTCACAACTTTATTA
Found at i:9017817 original size:27 final size:31
Alignment explanation
Indices: 9017760--9017817 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 31
9017750 CTTTTTTTCA
* *
9017760 TTATTGATTATATGTGCCTCATGTTCATTAT
1 TTATTGATTATATGTGCATCATATTCATTAT
9017791 TTATTG-TTA-AT-TGCATCATATTC-TTAT
1 TTATTGATTATATGTGCATCATATTCATTAT
9017818 ATTTGTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
27 4 0.16
28 10 0.40
29 2 0.08
30 3 0.12
31 6 0.24
ACGTcount: A:0.24, C:0.12, G:0.10, T:0.53
Consensus pattern (31 bp):
TTATTGATTATATGTGCATCATATTCATTAT
Found at i:9020026 original size:36 final size:36
Alignment explanation
Indices: 9019977--9020046 Score: 90
Period size: 36 Copynumber: 1.9 Consensus size: 36
9019967 GAATTAAGTT
*
9019977 GCATGCATTGCATTCACTG-CATTTATTACATTCATC
1 GCATGCATTGCATTCAC-GACATTCATTACATTCATC
*
9020013 GCATGC-TTCGCATTCACGACATTCATTGCATTCA
1 GCATGCATT-GCATTCACGACATTCATTACATTCA
9020047 CTAGATTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 3 0.10
36 27 0.90
ACGTcount: A:0.24, C:0.27, G:0.13, T:0.36
Consensus pattern (36 bp):
GCATGCATTGCATTCACGACATTCATTACATTCATC
Found at i:9020043 original size:18 final size:17
Alignment explanation
Indices: 9019977--9020047 Score: 63
Period size: 18 Copynumber: 4.0 Consensus size: 17
9019967 GAATTAAGTT
*
9019977 GCATGCATTGCATTCAC
1 GCATTCATTGCATTCAC
* *
9019994 TGCATTTATTACATTCATC
1 -GCATTCATTGCATTCA-C
*
9020013 GCATGC-TTCGCATTCAC
1 GCATTCATT-GCATTCAC
9020030 GACATTCATTGCATTCAC
1 G-CATTCATTGCATTCAC
9020048 TAGATTAATA
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
17 4 0.10
18 35 0.83
19 3 0.07
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.35
Consensus pattern (17 bp):
GCATTCATTGCATTCAC
Found at i:9020544 original size:41 final size:41
Alignment explanation
Indices: 9020397--9020629 Score: 229
Period size: 41 Copynumber: 5.6 Consensus size: 41
9020387 AAATCTCAAC
* *
9020397 TTTTATTTTTCAAAAGTTTCAAAACCTCTGGTGGGGGAAAAGCA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCTAGT--GGG-AAAGCA
* * **
9020441 TTTTA-TTTCCAAAAAGTTTCAAAGCCTCTAATGAGGGGAGCA
1 TTTTATTTTTC-AAAAGTTTCAAAGCCTCTAGTG-GGAAAGCA
* * * *
9020483 ATTTATTTTTGAAAAATTTCAAAGCCT-TCGGTGGGAAAGCA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCT-AGTGGGAAAGCA
* * *
9020524 TTTTATTTTTCCAAAGTTTCAAAGCCTCAAATGGGAAAGCA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCTAGTGGGAAAGCA
**
9020565 TTTTATTTTTCAAAAGTTTCAAAGCCTCTAGTGGGGGGAGCA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCTAGT-GGGAAAGCA
*
9020607 TTTTATTCTCTC-AAAGTTTCAAA
1 TTTTATT-TTTCAAAAGTTTCAAA
9020630 ACCTTTATTA
Statistics
Matches: 155, Mismatches: 27, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
41 69 0.45
42 51 0.33
43 12 0.08
44 23 0.15
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (41 bp):
TTTTATTTTTCAAAAGTTTCAAAGCCTCTAGTGGGAAAGCA
Found at i:9020607 original size:83 final size:83
Alignment explanation
Indices: 9020397--9020629 Score: 267
Period size: 83 Copynumber: 2.8 Consensus size: 83
9020387 AAATCTCAAC
* *
9020397 TTTTATTTTTCAAAAGTTTCAAAACCTCTGGTGGGGGAAAAGCATTTTA-TTTCCAAAAAGTTTC
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCTAGTGGGGG--AAGCATTTTATTTTCC--AAAGTTTC
* **
9020461 AAAGCCTCTAATGAGGGGAGCA
62 AAAGCCTCAAATGAGGAAAGCA
* * * * *
9020483 ATTTATTTTTGAAAAATTTCAAAGCCT-TCG-GTGGGAAAGCATTTTATTTTTCCAAAGTTTCAA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCTAGTG-GGGGAAGCATTTTA-TTTTCCAAAGTTTCAA
9020546 AGCCTCAAATG-GGAAAGCA
64 AGCCTCAAATGAGGAAAGCA
* *
9020565 TTTTATTTTTCAAAAGTTTCAAAGCCTCTAGTGGGGGGAGCATTTTATTCTCTCAAAGTTTCAAA
1 TTTTATTTTTCAAAAGTTTCAAAGCCTCTAGTGGGGGAAGCATTTTATTTTC-CAAAGTTTCAAA
9020630 ACCTTTATTA
Statistics
Matches: 125, Mismatches: 16, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
82 34 0.27
83 56 0.45
84 2 0.02
85 10 0.08
86 23 0.18
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (83 bp):
TTTTATTTTTCAAAAGTTTCAAAGCCTCTAGTGGGGGAAGCATTTTATTTTCCAAAGTTTCAAAG
CCTCAAATGAGGAAAGCA
Found at i:9021884 original size:24 final size:24
Alignment explanation
Indices: 9021857--9021902 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
9021847 AAGGTTTTAC
* * *
9021857 TTTTCTTTTTCTTTTTTATTTTGA
1 TTTTCATTTTATTTTCTATTTTGA
*
9021881 TTTTGATTTTATTTTCTATTTT
1 TTTTCATTTTATTTTCTATTTT
9021903 CCCTTTTTTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.11, C:0.07, G:0.04, T:0.78
Consensus pattern (24 bp):
TTTTCATTTTATTTTCTATTTTGA
Found at i:9021938 original size:7 final size:7
Alignment explanation
Indices: 9021887--9021976 Score: 56
Period size: 7 Copynumber: 12.0 Consensus size: 7
9021877 TTGATTTTGA
9021887 TTTTATT
1 TTTTATT
*
9021894 TTCTATT
1 TTTTATT
***
9021901 TTCCCTT
1 TTTTATT
9021908 TTTTATT
1 TTTTATT
9021915 TTTTATT
1 TTTTATT
9021922 TTTCTATT
1 TTT-TATT
9021930 ATTTT-TT
1 -TTTTATT
9021937 ATTATTATT
1 -TT-TTATT
9021946 CTATTTATT
1 -T-TTTATT
*
9021955 TTTTGTT
1 TTTTATT
*
9021962 ATTATATT
1 -TTTTATT
9021970 TTTTATT
1 TTTTATT
9021977 GTTGATTGAA
Statistics
Matches: 66, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
7 41 0.62
8 13 0.20
9 11 0.17
10 1 0.02
ACGTcount: A:0.17, C:0.07, G:0.01, T:0.76
Consensus pattern (7 bp):
TTTTATT
Found at i:9021956 original size:22 final size:22
Alignment explanation
Indices: 9021909--9021966 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
9021899 TTTTCCCTTT
9021909 TTTATTTTTTA-T-TT-TTCTA
1 TTTATTTTTTATTATTATTCTA
9021928 -TTATTTTTTATTATTATTCTA
1 TTTATTTTTTATTATTATTCTA
*
9021949 TTTATTTTTTGTTATTAT
1 TTTATTTTTTATTATTAT
9021967 ATTTTTTATT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
18 10 0.29
19 1 0.03
20 2 0.06
21 5 0.15
22 16 0.47
ACGTcount: A:0.19, C:0.03, G:0.02, T:0.76
Consensus pattern (22 bp):
TTTATTTTTTATTATTATTCTA
Found at i:9021974 original size:22 final size:23
Alignment explanation
Indices: 9021906--9021976 Score: 74
Period size: 25 Copynumber: 3.0 Consensus size: 23
9021896 CTATTTTCCC
*
9021906 TTTTTTATTTTTTATTTTTCTATTA
1 TTTTTTA-TTATTATTTTT-TATTA
9021931 TTTTTTATTATTATTCTATTTATT-
1 TTTTTTATTATTATT-T-TTTATTA
9021955 TTTTGTTATTA-TATTTTTTATT
1 TTTT-TTATTATTATTTTTTATT
9021977 GTTGATTGAA
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
22 6 0.14
23 1 0.02
24 15 0.36
25 18 0.43
26 2 0.05
ACGTcount: A:0.18, C:0.03, G:0.01, T:0.77
Consensus pattern (23 bp):
TTTTTTATTATTATTTTTTATTA
Found at i:9022228 original size:16 final size:16
Alignment explanation
Indices: 9022165--9022235 Score: 60
Period size: 16 Copynumber: 4.6 Consensus size: 16
9022155 ATATTTGTGC
* *
9022165 GATTGATTAGTTACAT
1 GATTGATTATTTGCAT
*
9022181 TATTGATTATTTGCAT
1 GATTGATTATTTGCAT
*
9022197 -ACTTTATT-TTTG--T
1 GA-TTGATTATTTGCAT
9022210 GATTGATTATTTGCAT
1 GATTGATTATTTGCAT
*
9022226 GATTTATTAT
1 GATTGATTAT
9022236 GATACTTTTG
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
13 6 0.14
14 5 0.11
15 5 0.11
16 28 0.64
ACGTcount: A:0.25, C:0.06, G:0.14, T:0.55
Consensus pattern (16 bp):
GATTGATTATTTGCAT
Found at i:9022273 original size:26 final size:25
Alignment explanation
Indices: 9022241--9022297 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
9022231 ATTATGATAC
9022241 TTTTGCATGAATTTATT-TACATAATA
1 TTTTGCATGAATTT-TTAT-CATAATA
* *
9022267 TTTTGCATGGATTTTTATTATAATA
1 TTTTGCATGAATTTTTATCATAATA
9022292 TTTTGC
1 TTTTGC
9022298 CAACTTAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 14 0.50
26 14 0.50
ACGTcount: A:0.28, C:0.07, G:0.11, T:0.54
Consensus pattern (25 bp):
TTTTGCATGAATTTTTATCATAATA
Found at i:9022295 original size:25 final size:25
Alignment explanation
Indices: 9022228--9022297 Score: 79
Period size: 26 Copynumber: 2.7 Consensus size: 25
9022218 ATTTGCATGA
*
9022228 TTTATTATGATACTTTTGCATGAATT
1 TTTATTATAATA-TTTTGCATGAATT
* *
9022254 TATT-TACATAATATTTTGCATGGATT
1 T-TTAT-TATAATATTTTGCATGAATT
9022280 TTTATTATAATATTTTGC
1 TTTATTATAATATTTTGC
9022298 CAACTTAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
25 14 0.38
26 16 0.43
27 7 0.19
ACGTcount: A:0.29, C:0.07, G:0.10, T:0.54
Consensus pattern (25 bp):
TTTATTATAATATTTTGCATGAATT
Found at i:9022909 original size:16 final size:15
Alignment explanation
Indices: 9022885--9022914 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
9022875 ATAAAAAAAT
9022885 ATTATTATAAATTTC
1 ATTATTATAAATTTC
9022900 ATTATATATAAATTT
1 ATTAT-TATAAATTT
9022915 TAAGTTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTATTATAAATTTC
Found at i:9027060 original size:25 final size:25
Alignment explanation
Indices: 9027021--9027070 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
9027011 AAAGTAATAC
*
9027021 AAAAAATTTTATATATATGTTTTTA
1 AAAAAATTTTATATATATATTTTTA
*
9027046 AAAAAATATTT-TATATTTATTTTTA
1 AAAAAAT-TTTATATATATATTTTTA
9027071 TCGATACGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 19 0.86
26 3 0.14
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (25 bp):
AAAAAATTTTATATATATATTTTTA
Found at i:9027746 original size:29 final size:29
Alignment explanation
Indices: 9027712--9027777 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
9027702 TATGATTTTT
* *
9027712 TATATATTTGTGCTAATAGTGTCTACTCA
1 TATATATTTGTACTAATAGTGTCTAATCA
* * * *
9027741 TATATATCTGTATTAATCGTGTTTAATCA
1 TATATATTTGTACTAATAGTGTCTAATCA
9027770 TATATATT
1 TATATATT
9027778 CATATTATTC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.48
Consensus pattern (29 bp):
TATATATTTGTACTAATAGTGTCTAATCA
Found at i:9027783 original size:29 final size:29
Alignment explanation
Indices: 9027738--9027794 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
9027728 TAGTGTCTAC
*
9027738 TCATATATATCTGTATTAATCGTGTTTAA
1 TCATATATATCTATATTAATCGTGTTTAA
*
9027767 TCATATATAT-TCATATTATTCGTGTTTA
1 TCATATATATCT-ATATTAATCGTGTTTA
9027795 TTCGTAACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 1 0.04
29 24 0.96
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.51
Consensus pattern (29 bp):
TCATATATATCTATATTAATCGTGTTTAA
Found at i:9030467 original size:27 final size:27
Alignment explanation
Indices: 9030431--9030482 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
9030421 AAAGTTTGAT
9030431 ATATAAAAGAAATTAATACCAACTATG
1 ATATAAAAGAAATTAATACCAACTATG
* *
9030458 ATATAAAAGAAATTACTACTAACTA
1 ATATAAAAGAAATTAATACCAACTA
9030483 CTTAGCATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.56, C:0.12, G:0.06, T:0.27
Consensus pattern (27 bp):
ATATAAAAGAAATTAATACCAACTATG
Found at i:9031750 original size:11 final size:10
Alignment explanation
Indices: 9031734--9031763 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
9031724 ACCTTGTGAG
9031734 TTTTTTTTTA
1 TTTTTTTTTA
9031744 TTTTTTTTTA
1 TTTTTTTTTA
*
9031754 TTTTTCTTTA
1 TTTTTTTTTA
9031764 AGTTTTCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.10, C:0.03, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:9033121 original size:17 final size:18
Alignment explanation
Indices: 9033084--9033127 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
9033074 TTGGTTCAAA
9033084 TTTCTATTTTTAGAAACT
1 TTTCTATTTTTAGAAACT
* *
9033102 TTTC-ATTTTTAGCAATT
1 TTTCTATTTTTAGAAACT
*
9033119 TTTATATTT
1 TTTCTATTT
9033128 AGTAAGTTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.25, C:0.09, G:0.05, T:0.61
Consensus pattern (18 bp):
TTTCTATTTTTAGAAACT
Found at i:9033989 original size:10 final size:11
Alignment explanation
Indices: 9033969--9033993 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
9033959 ATGAATCAAG
9033969 AAAAAGAAAAA
1 AAAAAGAAAAA
9033980 AAAAAGAAAAA
1 AAAAAGAAAAA
9033991 AAA
1 AAA
9033994 TCAACATCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:9041660 original size:97 final size:96
Alignment explanation
Indices: 9041482--9041660 Score: 220
Period size: 97 Copynumber: 1.8 Consensus size: 96
9041472 TTCTAAAAAA
* * *
9041482 TGATTTAATAAAAATTTTAATAAAAAAATTTAAACTAATAGATTAATATAATTCAATATGAAAAT
1 TGATTTAATAAAAACTTTAATAAAAAAATCTAAACTAATAGATTAATATAATTCAATATAAAAAT
* **
9041547 TAATAGTATGTTAAAAAAATTTTAAATGTCAT
66 AAATAAAATG-TAAAAAAATTTTAAATGTCAT
* *
9041579 TGATTTGATAAAAACTTTAATAAAAAAATCTAAACTAATA-AGTTAATA-AAGTTTAATATAAAA
1 TGATTTAATAAAAACTTTAATAAAAAAATCTAAACTAATAGA-TTAATATAA-TTCAATATAAAA
9041642 ATAAATTAAAAATG-AAAAA
64 ATAAA-T-AAAATGTAAAAA
9041661 TGTCATTTAC
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
96 3 0.04
97 62 0.89
98 1 0.01
99 4 0.06
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.35
Consensus pattern (96 bp):
TGATTTAATAAAAACTTTAATAAAAAAATCTAAACTAATAGATTAATATAATTCAATATAAAAAT
AAATAAAATGTAAAAAAATTTTAAATGTCAT
Found at i:9041820 original size:13 final size:13
Alignment explanation
Indices: 9041804--9041842 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
9041794 TTTATTTATT
9041804 ATTTTAATTTTTA
1 ATTTTAATTTTTA
* *
9041817 ATTTTAATTTATG
1 ATTTTAATTTTTA
*
9041830 ATTGTAATTTTTA
1 ATTTTAATTTTTA
9041843 TTTAATTATT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (13 bp):
ATTTTAATTTTTA
Done.