Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 6 of 129
Found at i:1034352 original size:892 final size:893
Alignment explanation
Indices: 1029134--1035695 Score: 8123
Period size: 902 Copynumber: 7.4 Consensus size: 893
1029124 GGAACGAGGG
1029134 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT--
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
1029197 -A-T-G-A---AG----AT-----GTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTGGC
66 CATTGGCATGCAGAAATATGAAGAGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
1029246 ACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCTGCCCGCCCGCCTATTTCGTCGGTTGG
131 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC--C-GCCCGCTCG----TTTCATCGATTGG
* * * * * * * *
1029311 CTTAGGCATAC-GAGGTTCATTCCCAGTCTAAGATCAGATCGGGCTGAGGGTTGCGGCAACAGGA
188 CTTAGGCATACGGA-GTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGACAGCAGGA
* * * * *
1029375 TCGGCAAG-ATGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCCCACCCCTCTGGTCGGC
252 TCGG-TAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
1029439 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCA
316 TGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
1029504 TACAGAGTTCATTCCCTGT-TGAAGATCAGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCT
381 TACGGAGTTCATTCCCAGTCT-AAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCT
* * * * * *
1029568 CGGGCATGTGCTGGTGCAGCATTTTTCTTC-ACCGGGCACCATCGCCGGGGCATCACCGGAGAAC
445 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
** * * ** * *
1029632 CTGACCGGTGGCATTGGGGTTTCGGCGATCGGGGGGGTCGGGGGGGTGTGCACAAATGATGTGCG
510 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CCAGGGGGTGTGCGCACATGATGTGCG
* *
1029697 ATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATGAAACCTCGAGAACTCACAC
574 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
1029762 CCCATTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
639 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
* *
1029827 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTT
704 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGT
* * *
1029892 ACATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAAC-TCTTTCTGAAAAA
768 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTC-TTCCGAAAAA
* * * * * *
1029956 A-TTTAAAAAAT-TCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAAAAAATGAGTCGTC
832 ATTTTAAAAAATCT-C-AAACCGTAAAAAG-TTTCAAAATCGTGAAAAATAGAAAACGAGTCATC
* * *
1030019 TTGCCATGAACCTTCACGTGAAGGCTTAAAGGAACATTGTATGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
1030084 CATTTGCACGTAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCAATCCACGGCTTG
66 CATTGGCATGCAGAAATATGAAGA-GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * * *
1030149 CGCATCCCATCTCTCTGACCGGCATAGTGCCCGCCCACCCGCTGGTTTCGTCGGTTGTCTTAGGC
130 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGC
* ** * * *
1030214 ATACGAAGTTCATTCCCAGTCTAAGAAT-GGACTGGACCGACGGTTGTGACAGCAGGATCGGCAG
195 ATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCAGACCGAAGGTTGCGACAGCAGGATCGGTAG
* * * **
1030278 CACGTAGAGGGGGACCCGGTCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCGATTGAGCGCC
259 CACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
1030343 CGCAGGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAG-AT-CGG-G-
324 CGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* *
1030404 ------CC-G-----GAT----------CGAGGGTTGCCG-TAGCACATGTTGGGCTCGGGCATG
389 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-CGACAGCACATGCTGGGCTCGGGCATG
* *
1030446 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCGCTGGAGAA-CTGATCG
453 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAACCTGACCG
* * * *
1030509 ACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATCGGTGC
517 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
1030574 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCGCCTTAA
582 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-A
* * *
1030639 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCAATAAAGTGTCTGAAATGGGGACACT
646 AAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
1030704 TTTTCCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAAATTTTTTGTGAATGCCA
711 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
1030769 ACAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTGAAA
776 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAA
** * *
1030834 AATCAAAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG-AAACAAGTCGTC
841 AATCTCAAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCATC
* * *
1030887 TTGCCATGAAACTTAATGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
1030952 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACGGCTTG
66 CATTGGCATGCAGAAATATGAAGA-GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
1031017 TGCATCTCGTCTCTCTGGCCGGCGTAGTCCCGCCTGCCCGTCCGCTCATTTCGTCGATTGGCTTA
130 CGCATCCCGTCTCTCTGGCCGACGTAGT---GCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTA
* * * * * *
1031082 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGC-AGTAGCAGGATCAG
192 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGA-CAGCAGGATCGG
* * * *
1031146 TAGCACACAGAGGGGGACCC-AGTCGATCCCCGGCTTGCGCATCTCGTCCCTCTGGCCGGCTAAG
256 TAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * ** *** * *
1031210 CACCAGCACGCTAATTTCGCAGGTTGACTTAGGCATACGGAGTTCATTCCTAG-CTAAGGATACG
320 CGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * *
1031274 GAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTACGACAGCACATGCTGGGCTCGAGC
385 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* * * *
1031339 ATGTGCTGGTGCCGCATTTTTCTTTGTCGGGG-ACCAACGCCGGAGCATCGCCGGAGTACCTGAC
450 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
* * * * *
1031403 CGACGGTATTGGGGTTCC-AGCGATCGGAGGGGCCGGGGGGGTGTGCGCACAAGATGTGTGATGG
515 CGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGG
* * *
1031467 GTGCTGGTGCTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCC
578 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
1031532 TTAAAGAGCGTTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGAC
643 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
1031597 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATG
708 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
1031662 CCAATAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCAAAAAAATTTTA
773 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTA
* * *
1031727 AAAAATCCCAAACCGTAAAAAGTTATGAAAATCGTAAAAAATAGAAAACGAGTCATC
838 AAAAATCTCAAACCGTAAAAAGTT-TCAAAATCGTGAAAAATAGAAAACGAGTCATC
* *
1031784 TTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCAT-AAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
1031848 AATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCATG
66 CATTGGCATGCAGAAATATGAAGA-GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
1031913 CGCATCCCGTCTTTCTGGCTGACGTAGTGCCTGCCCGTCCGACCGCCCGCTCGTTTCATCGGTTG
130 CGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCG--C--CCGCCCGCTCGTTTCATCGATTG
* * * * * *
1031978 GCATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-AAGGGTTACGGCAGTAAG
187 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAA-GGTTGCGACAGCAGG
* * * * *
1032042 ATCGATAGCACGTAGAAGGGGACCCGATTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGC
251 ATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
1032107 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTACGCATACGGAGTTCATTCCTAGTCCAAGCA
316 TGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * * *
1032172 TGCAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTT
381 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTC
* *
1032237 GGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
446 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * * * * * * *
1032302 TGATCGACGGCATTGGGGTTCTGGCAACCGGGGGGGCCAGGGGGTGTGCGTACATGTTGTACGAT
511 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGAT
* * *
1032367 GGGTGCTGGTAGTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCA-AACC
576 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
1032431 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
641 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
1032496 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTTTTGC
706 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGC
* * * * *
1032561 ATGCCAATAAAAATACAAGGATCACGTCTACCAAGCTCGGGGCCAAAACTCCTTCCAAAAAAATT
770 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATT
* * **
1032626 TAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCATC
835 TTAAAAAATCTCAAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCATC
* **
1032686 TTGCCTTGAAACTTCACGTGAAGGCTTAAGGGAAAATTGTATGAATTTACAAGCCAT-AAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
1032750 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATTGATCCACGGCTTG
66 CATTGGCATGCAGAAATATGAAGA-GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
1032815 CGCATCCCGTCTCTCTGACCGACGTAGTGCTCACCCGTCCGCCCGCCCGCTCGGTTCGTCGGTTG
130 CGCATCCCGTCTCTCTGGCCGACGTAGTG------C--CCGCCCGCCCGCTCGTTTCATCGATTG
* * **
1032880 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGAGACCGAGGGTTGTTACAGCAGGA
187 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGACAGCAGGA
* * * * * *
1032945 TTGGTAGCACGCAGAGGTGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCTCTCTGGCCGACT
252 TCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
1033010 GAGCTCCCGTACTCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCAT
317 GAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * *
1033075 ATGGAGTTCAATCCCAGTCTGAGATCGGATCGGACCGAGGGTTGCGACAGCACATGTTGGGCTCG
382 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCG
* **
1033140 GGCATGTGCTGGTGCCGCATTTTTTTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCT
447 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCT
* * * *
1033205 GACCAACGGCATTGGGGTTTCGACGATCGGGTGGGG-CAGGGCGTGTGCGTACATGATGTGCGAT
512 GACCGACGGCATTGGGGTTCCGACGATCGGG-GGGGCCAGGGGGTGTGCGCACATGATGTGCGAT
* * *
1033269 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTTGAGAACTCGCACCC
576 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
1033334 CTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACGAGTAGCCATTAAAATGTCTTAAATGGGG
641 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
1033399 ACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGACTGTTTTTGTGCA
706 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
1033464 TGCCAACAACAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAATTT
771 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTT
* ** * * *
1033529 TAAAAAATTTTGAACCGCAAAAAGTTTTCGAAATCGTGAAAAATAGAAAACGAGTCGTC
836 TAAAAAATCTCAAACCGTAAAAAG-TTTCAAAATCGTGAAAAATAGAAAACGAGTCATC
* *
1033588 TTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
1033653 CATTGGCATGCAGAAATATGAAGA-TGCCTAAACCCACCTACGACCCTATCGATCCACGGCTTGC
66 CATTGGCATGCAGAAATATGAAGAGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
1033717 GTATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCTCGTTTCATCGATTGGCTTAGGCA
131 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCA
* * * * *
1033782 TACTGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAAGGTTGCGATAGCAAGATCGGCAGCA
196 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGACAGCAGGATCGGTAGCA
*** * * *
1033847 CGCAGAGGGGGACCCGATCGATCCCTAACTTGCGCATCCCACCCCTCTGACCGGCTGAGAGCCCG
261 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
*
1033912 TACGCTCGTTTCATGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
326 TACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * ** * * *
1033977 ATTCCCATTCTAAGATCGAATTGGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGC
391 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGC
* **
1034042 TGGTGCCGCATTTTTCTTCGTCGGGGCACCAT-GTCGGAGCATCGTCGGAGAACCTGACCGGTGG
456 TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGG
** *
1034106 CATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
521 CATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* ** *
1034171 ACTCGGCCCTTATATTAACCCCCTATCCCTCATCAAAACTCGAGAACTCACACCCCCTTAAAGAG
586 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* *
1034236 CATTTGAGATTTTATAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
651 CATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
1034301 CAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATGTTTTTGTGCATGCCAACAAA
716 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
1034366 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAATTTAAAAAAATTT
781 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCT
**
1034431 TGAACCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATC
846 CAAACCGTAAAAAGTTT-CAAAATCGTGAAAAATAGAAAACGAGTCATC
* *
1034480 TTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
1034545 CATTGGCATGTAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATTGATCCACGGCTTG
66 CATTGGCATGCAGAAATATGAAGA-GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
1034610 CGCATCCCGTCTCTCTGGCCGGCGTTGTGCCCGCCCGCCCGCCCACCCGCTTGTTTCAACGATTG
130 CGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCG----CCCGCTCGTTTCATCGATTG
* * * ** * * * *
1034675 GCTTAGGCATGCAGAGTTCATTCCCAGTATAAGATCAAACCGGACTGAGGGTTGCGACAGTAGGA
187 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGACAGCAGGA
** * * * * *
1034740 TCGACAGCACGCAGAGGGTGACTC-AGTCGATCCCCGGATTGCGCATCCCGCCCCTCAGGCCGGT
252 TCGGTAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
1034804 TGAGCGCCCGTACACTCGTTTCGTGGGTTGACTTAGGCATACGGAG----TT--CA-T-T---C-
316 TGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
1034857 --C------CA-----A-TCTAAGATTGGACTGGACCGAGGGTTACGACAGCACATGCTGGGCTC
381 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTC
* * * * **
1034908 AGGCATGTACTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACC
446 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * * *
1034973 TGACCGACGTCATTGGGGTTCCGATGATCGGGGGGGCCAGGGGGTGTGCTCACATGATGTGTGAT
511 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGAT
* *
1035038 GGGTGCTGGCAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
576 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
1035103 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
641 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
1035168 ACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTATGC
706 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGC
* * * * *
1035233 ATGCCAA-AAAAATACAAGGATCATGTCTACTAGGTTTAGGGCCAAAACTTCTTTCGAAAAAATT
770 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATT
* * * * * *
1035297 TCAAAAAATCTCGAACCGCT-AAAAGTTTCGAAAATCGTGAAAAACAAAAAATGAGTCGTC
835 TTAAAAAATCTCAAACCG-TAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCATC
*
1035357 TTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * * *
1035422 CATCAGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
66 CATTGGCATGCAGAAATATGAAGA-GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
1035487 CGCATCCCGTCTCTCTGGCATG-CGTAGT----GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
130 CGCATCCCGTCTCTCTGGC-CGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGG
* *
1035547 CATACGGAGTTCTTTCCCAGTCTAAGATCAGG-CCGGACC-AAGGGTTGC-AGCAGCAGGATCGG
194 CATACGGAGTTCATTCCCAGTCTAAGATC-GGACCAGACCGAA-GGTTGCGA-CAGCAGGATCGG
** * * *
1035609 TAGCACGCAGACAGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGTCGGCTGAGC
256 TAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
1035674 GCCCGTACGCTCGTTTCATGGG
321 GCCCGTACGCTCGTTTCATGGG
1035696 GACACTTTTT
Statistics
Matches: 4973, Mismatches: 584, Indels: 260
0.85 0.10 0.04
Matches are distributed among these distances:
864 2 0.00
865 142 0.03
866 1 0.00
868 155 0.03
869 186 0.04
870 211 0.04
871 202 0.04
872 3 0.00
873 1 0.00
876 79 0.02
877 497 0.10
878 18 0.00
880 5 0.00
881 1 0.00
882 2 0.00
885 61 0.01
886 5 0.00
888 2 0.00
889 1 0.00
890 1 0.00
891 9 0.00
892 451 0.09
893 288 0.06
894 66 0.01
895 30 0.01
896 565 0.11
897 157 0.03
898 16 0.00
899 1 0.00
900 9 0.00
901 355 0.07
902 1174 0.24
903 208 0.04
904 66 0.01
906 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGCAGAAATATGAAGAGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAAGGTTGCGACAGCAGGATCGGTAGCA
CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
TACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGG
CATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCT
CAAACCGTAAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCATC
Found at i:1038560 original size:712 final size:714
Alignment explanation
Indices: 1037166--1038644 Score: 2097
Period size: 712 Copynumber: 2.1 Consensus size: 714
1037156 CCCAGTCTAA
* * * *
1037166 GCATAC-AGAGTTCATTCCCAGTCCAAGATCGGATCAGACCGAGGGTTGCAGCAGCACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTAG
* * *
1037230 GCTCGGGCAAGTGCTGGTGCCACATTTTTCTTCACCAGGGCTCCATCGTTGGAGCATCGTCGGAG
65 GCTCGGGCAAGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * * *
1037295 AACCTGACCGGCAACATTAGGTTTTCGGTGATCGAGGGGGCTGGGGAGGGTGTGCGCACATGATG
130 AACCTGACCGACAACATTAGGGTTCCGGCGATCGAGGGGGCCGAGGAGGGTGTGCGCACATGATG
* * *
1037360 TGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCCTCAAACCTCGAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
1037425 ACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGTAATTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGCGTCTGAA
*
1037490 ATGGGGAAACTTTTTTCAGATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
325 ATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** *
1037555 TGTGCATACCAACAAAAAATAGAAGGATCATGTCTACCAAGTTTGGGTTCAAAACTCCATTCGAT
390 TGTGCATACCAACAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATTCGAA
* * *
1037620 AAAATTTTAAAAAATCCTCAACCGTAAAATGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGT
455 AAAAATTTAAAAAATCCTCAACCGAAAAATGTTTAAAAAATCATGAAAAATAGAAAACAAGTCGT
1037685 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGAAAT
520 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGAAAT
* *
1037750 GGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCCTATCGGTCCACGGCTTGCGCAT
585 GGCATTGGCATGCAAAAATAAGAAGATGTGCCTAAACCCACCCTATCGATCCACGGCTTGCGCAT
* * *
1037815 CCCGTCTCTCTGGCCGACGAAGT-GCCCGCCCGCCCGCCCGCCCGTTCATTTCGTCGGTTGGCTT
650 CCCGTCTCTCTGGCCGACGAAGTCGCCCGCCCGCCCGCCCGCTC--TCATTTCATCAGTTGGCTT
1037879 AG
713 AG
* *
1037881 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACC-GAACGGAGGGTTGCGGCAGCACATGCTAG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCAGCAGCACATGCTAG
* * ** * *
1037945 GCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGCCGGAG
65 GCTCGGGCAAGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGCCGGAG
* ** * *
1038009 TACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGG-GGGTGTGCGCACATGATG
130 AACCTGACCGACAACATTAGGGTTCCGGCGATCGAGGGGGCCGAGGAGGGTGTGCGCACATGATG
1038073 TGCGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
1038137 GCACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGCGTCTGAA
* *
1038202 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGGTTGAATTTTT
325 ATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-GCTGAATTTTT
* * *
1038266 TTGTGCATGCCAA-AAAAAATACACGGATCATGTCTACCAATTTTGGGGCCAAAACTCC-TTCCG
389 TTGTGCATACCAACAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATT-CG
* *
1038329 AAAAAAATTTAAAAAATCC-CGAACTGCAAAAAT-TTT-GAAAATCATGAAAAATAGAAAACAAG
453 AAAAAAATTTAAAAAATCCTC-AACCG-AAAAATGTTTAAAAAATCATGAAAAATAGAAAACAAG
* * *
1038391 TTGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAA-
516 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAG
* *
1038455 AAATGTCATTGGCATGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCAC
581 AAATGGCATTGGCATGCAAAAATAAGAAGATGTGCCTAAA--C-CC-A-C-C-CTATCGATCCAC
* *
1038520 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT-GCCCGCCCGCCCGCCCGCTCGCTCGTTTCA
639 GGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTCGCCCGCCCGCCCGCCCGCT--CTCATTTCA
1038584 TCAGTTGGCTTAG
702 TCAGTTGGCTTAG
* * ** *
1038597 GTATACG-AGTTCATTCCTAGTCTAAGATTGGACTAGACCGAGGGTTGC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
1038645 GACAGCAGGA
Statistics
Matches: 680, Mismatches: 68, Indels: 32
0.87 0.09 0.04
Matches are distributed among these distances:
709 37 0.05
710 88 0.13
711 72 0.11
712 188 0.28
713 25 0.04
714 88 0.13
715 93 0.14
716 88 0.13
718 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (714 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCACATGCTAGG
CTCGGGCAAGTGCTGGTGCCACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACAACATTAGGGTTCCGGCGATCGAGGGGGCCGAGGAGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGCGTCTGAAA
TGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATACCAACAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATTCGAAA
AAAATTTAAAAAATCCTCAACCGAAAAATGTTTAAAAAATCATGAAAAATAGAAAACAAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGAAATG
GCATTGGCATGCAAAAATAAGAAGATGTGCCTAAACCCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGAAGTCGCCCGCCCGCCCGCCCGCTCTCATTTCATCAGTTGGCTTAG
Found at i:1038900 original size:159 final size:158
Alignment explanation
Indices: 1038587--1038939 Score: 386
Period size: 159 Copynumber: 2.2 Consensus size: 158
1038577 CGTTTCATCA
* * * ** *
1038587 GTTGGCTTAGGTATACGAGTTCATTCCTAGTCTAAGATTGGACTAGACCGAGGGTTGCGACAGCA
1 GTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCA
** * * ** * *
1038652 GGATCGACAGCACGCAGAGGGGGACCTGGTCGATCTTCGACTCGTGCATCCCGCCCGTCTGGCCG
66 GGATCGACAGCACGCAGAAAGGGACCCGCTCGATCCCCGACTCGTGCATCCCACCCCTCTGGCCG
*
1038717 ACTGAGCGCCAGCACCCTCATTTCGTGG
131 ACTGAGCGCCAGCACCATCATTTCGTGG
* ** **
1038745 GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGGTAGC
1 GTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGC
* * * * *
1038810 AGGATCGATAGCACGCAGAAAGGGACCCGACT-GATCCCCGGCTTGTGTATCGCACCCCTCTGGC
65 AGGATCGACAGCACGCAGAAAGGGACCCG-CTCGATCCCCGACTCGTGCATCCCACCCCTCTGGC
* * ** *
1038874 CGGCTGAGCGCCCA-CACGATTGTTTCGTTG
129 CGACTGAGCG-CCAGCACCATCATTTCGTGG
*
1038904 GTTGACTTAGGCATACGAGTTCATTCCCAATCTAAG
1 GTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAG
1038940 CATACGGAGT
Statistics
Matches: 161, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
158 33 0.20
159 124 0.77
160 4 0.02
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (158 bp):
GTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCA
GGATCGACAGCACGCAGAAAGGGACCCGCTCGATCCCCGACTCGTGCATCCCACCCCTCTGGCCG
ACTGAGCGCCAGCACCATCATTTCGTGG
Found at i:1038952 original size:26 final size:25
Alignment explanation
Indices: 1038914--1038965 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
1038904 GTTGACTTAG
1038914 GCATACGAGTTCATTCCCAATCTAA
1 GCATACGAGTTCATTCCCAATCTAA
*
1038939 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAATCTAA
1038965 G
1 G
1038966 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAATCTAA
Found at i:1039762 original size:26 final size:26
Alignment explanation
Indices: 1039728--1039777 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1039718 GTTAACTTAG
*
1039728 GCATTCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1039754 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
1039778 GACCAGCGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1043201 original size:27 final size:26
Alignment explanation
Indices: 1043159--1043212 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
1043149 GTTGACTTAG
* *
1043159 GCATTCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1043185 GCATACGGAAGTTCATTCCCAATCTAA
1 GCATACGG-AGTTCATTCCCAATCTAA
1043212 G
1 G
1043213 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1043602 original size:902 final size:897
Alignment explanation
Indices: 1039786--1063785 Score: 16657
Period size: 902 Copynumber: 26.4 Consensus size: 897
1039776 CTGACCAGCG
** * * *
1039786 GCATTGGGGTTCCGGTGATC-AGGGGGTCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTG
1 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* ** *
1039850 GTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCATGCCCCCTTAAAA
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* ** *
1039915 AGCATTTGATATTTTACAGGTTTGCTGCCAAAAGCCATTAAAGTGTCAGAAATGGGGACACTTTT
131 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
1039980 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTGTTTTGTGCATGCCAAAA
196 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
1040045 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
261 AAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* *
1040110 -CTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
325 CCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * **
1040174 TCATGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
389 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * *
1040239 AAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGACTTGCGCATCCTGTCTC
454 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
1040304 TCTGGCCGGCGCAGTTCCCACTCGGTCGTCCGCCCGCCCGCTTGTTTCGTCGATTGGCTTAGGCA
519 TCTGGCCGGCGTAG-T-GC-C-C-G-C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * **
1040369 TACGGAGTTCATTCCCAGTCTAAGATCGGACC-GCACCGAGGCTTGGGGCAGCAGGATCGGTAGC
576 TACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACTGAGGGTTGCGGCAGCAGGATCGACAGC
* * *
1040433 ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCTC
640 ATGCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
1040498 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAG--T---C-TA---AG--
704 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
1040552 -------A---T-AG----GACCGGACCGAGGGTTACGGCAGCACATGCTGGGATCGGGCATGTG
769 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
* * * * *
1040602 CTAGTGCCGTA-TTTTCATCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACC-GA
834 CTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGA
* ** * *
1040664 TGGCATTGGGGCTCCGGTGATC-GGGGGGCC-GGGGGGTGTGCACACATGATGTGCGATAGGTGC
1 --GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
1040727 AGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAT-GACAACTCACACCACCTTA
64 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTA
*
1040791 AAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
128 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * ** *
1040856 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACCAAATTTTTTTATGCATGCCA
193 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
** * *
1040921 ATGAAAATACAAGGATCACGTCTACCAGGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAA
258 ACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * *
1040986 AATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAA
322 AATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
1041051 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGT-AAAATGGCATTGGCATG
387 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAATGGCATTGGCACG
* * *
1041115 CAGAAATTTAAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGT
451 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
1041180 CTCTCTGACCGGCGTAGTGCCCGCCCGCCCACCTGCTCATTTCGTCGGTTGGCTTAGGCATACGA
516 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * ** * *
1041245 AGTTCATTCTCAGTCTAAGATCGGACCAGACTGAGGGTTATGGCAACAGGATCGACAGCATGTAG
581 AGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCATGCAG
* * * * * * *
1041310 AGGGGGACCTGATCAAT-CC--CTT-TGCATCGCGATCACCCTCT--TC--CTG-GCG-CCGTAC
646 AGGGGGACCCGACCGATCCCGGCTTGCGCATCCCG--C-CCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
1041365 GCTCAGCTTTCGTGGGTTGACTTAGGCATTCGGAGTTCATTCCCGAGTTGTAGGCATACGGAGTT
708 GCTC-G-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AG-TCTAAGCATACGGAGTT
* * * * * *
1041430 CATT-CCAGTCTAAGATCGGA-TGAACCAAGGGTT------GCACATGCCGGTCTTC-GGCATGT
769 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGC-TCGGGCATGT
* * * *
1041486 GCTGGTG-CGCATTTTTCTGTCGCC-GGG-ATGCA-C--CGGAGCAGCG-CGAAGAA-CTGACCG
833 GCTGGTGCCGCATTTTTCT-TCACCGGGGCA-CCATCGTCGGAGCATCGCCGGAGAACCTGACCG
*
1041543 TA
896 GA
* * * *
1041545 GCATTAGGTGTTCCAAACGAT-GGTGGGGCCGGGGAGGGTGTGCGCACATGGATGTGCAATGGGT
1 GCATT-GGGGTTCC-GACGATCGGGGGGGCCGGGG-GGGTGTGCGCACAT-GATGTGCGATGGGT
* **
1041609 GCTGGTACTTGGCCCTTATATTGGCCCCATAT-CCTCATCAAACCTCGAGAACTCATGCCCCCTT
62 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
1041673 AAAAAGCATTTGATATTTTACAGGTTTGCTGCCA-AAGCCATTAAAGTGTCAGAAATGGGGACAC
127 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
1041737 TTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTGTTTTGTGCATGC
192 -TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
*
1041802 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-A
256 CAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
1041866 AAAAT-CTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATG
320 AAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
1041930 AAACTTCATGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCA
384 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * * *
1041995 CATAGAAATATGAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGACTTGCACATCCC
449 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * **
1042060 GTCTCTCTGGCTGGCGCAGTTCCCACCCGGTCGTCCGCCCGCTCGCTTGTTTCGTCAATTGGCTT
514 GTCTCTCTGGCCGGCGTAGTGCCCGCCC-G-C--CCGCCCGCT--C--GTTTCGTCGGTTGGCTT
* * *
1042125 AGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACC-GCACCGAGGCTTGGGGCAGCAGGATC
571 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAG-ACTGAGGGTTGCGGCAGCAGGATC
** * * * * *
1042188 GGTAGTACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCGGGCTGA
634 GACAGCATGCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
1042253 GCGCTCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA-
698 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * *
1042311 --AG---------A---T-AG----GACCGGACCGAGGGTTACGGCAGCACATGCTGGGATCGGG
763 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGG
* * *
1042357 CATGTGCTGGTGCCGTA-TTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGA
828 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
1042421 CC-GA
893 CCGGA
** * * *
1042425 CGGCATTGGGGCTT-CGGTGGTCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATAGGTG
1 --GCATTGGGG-TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
1042489 CAGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCAT-GACAACTCACACCACCTT
63 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTT
1042553 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
127 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* ** *
1042618 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCCAAATTTTTTTATGCATGCC
192 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
** * *
1042683 AATGAAAATACAAGGATCACGTCTACCAGGTTTGGGACTAAAACTCCTTCCGAAAAAATTTTAAA
257 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCGAAAAAATTTTAAA
* *
1042748 AAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAA
321 AAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
1042813 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATACAAGCCAGAAAAATGGCATTGGCATG
386 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * * *
1042878 CAGAAATTTAAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCACATCTCGT
451 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * *
1042943 CTCTCTGGCTGGCGTAGTGCCCGCCCGCCCACCTGCTCATTTCGTCGGTTGGCTTAGGCATACGA
516 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * *
1043008 AGTTCATTCTCAGTCTAAGATCGGACCAGACTGAGGGTTACGGCAACAGGATCGACAGCATGTAG
581 AGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCATGCAG
* * * * * * ** * *
1043073 AGGGGGACCTGATCAATCCTCGGCTTGCGCATCCCACCCCTCTGGCCAGATGAGTACCCGTATGC
646 AGGGGGACCCGACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* *
1043138 TCATTTCGTGGGTTGACTTAGGCATTCGGAGTTCATTCCCAGTCTAAGCATACGGAAGTTCATTC
710 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG-AGTTCATTC
* * * * * *
1043203 CCAATCTAAGATCGGACCGAACCAAGGGTTGTGACAGCACATGCTGGGCTCGAGCATGTGCTGGT
774 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGT
** *
1043268 GCCGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGCCGAAGAACCTGACCGGTA
839 GCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG-A
* *
1043328 GCATTAGGGTTCCAACGATCGGGGGGGCCGGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCT
1 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
1043393 GGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGTGAACTCACACCCCTTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
1043458 GAGCATTGGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTCTGAAATGGGGAAACGTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
1043523 TTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAC
195 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * *
1043588 ATAAATAGAAGGATCACGTCTACCAAGTTTGGGGTCAAAAATCCTTCCGAAGAAATTTTAAAAAA
260 AAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* ** *
1043653 TCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
324 TCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
1043718 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAACGGCATTGGCACGTAG
389 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * *
1043783 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACAGCTTGTGCATCCCGTCTC
454 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
1043848 TCTGTCCAGCGTAGTTCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGATTGGTTTAGGCATACG
519 TCTGGCCGGCGTAG-T---GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * *
1043913 GAGTTCATTCCCAATCTAAGATCGGACCAGACCGAAGGTTGCGGTAGCAGGATCGACAGCATGCA
580 GAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCATGCA
** * * * * *
1043978 GAGGGGGACTTGGCCGATCCCTGGCTTGCGAATCCCACCCCTTTGGTCGGCTGAGCGCCCGCACG
645 GAGGGGGACCCGACCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
*
1044043 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGATTTCATTC
709 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* *
1044108 CCAGTCTAAGATAAGACCGGACTGAGGGTTGC-AGCAGCACATGCTGGGCTCGGGCATGTGCTGG
774 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGG
** * * * * ** * * *
1044172 TGCTACATTTTTCTTCGCCAGGGCACCAGCGCCGGAGCATTACCGGAGATCCTGACATGCA
838 TGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC-CGGA
* *
1044233 GCACTGGGGTTCCGACGATCGAGGGGGCCAGGGGTGGGGTGTGCGCACATGATGTGCGATGGGTG
1 GCATTGGGGTTCCGACGATCGGGGGGGCC--GGG-GGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
1044298 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATGAAACCTCAAGAACTCCCACCCCCTTA
63 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
1044363 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTCTCTGAAATGGGGACACT
128 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
1044428 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCA
193 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
1044493 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTTAAAA
258 ACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * ** * *
1044558 AATCCAGAATCGTAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATCAAA
322 AATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
1044623 CTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
387 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * * * *
1044688 AGAAATATGGAGATGTGCCTAAACCCACCTACCACCATATTGATCCACGGCTTGCGGATCCCGCC
452 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * **
1044753 TCTCTGGCCCGTGTAGTGCCCGCCCGCCCGCCCGCCCGCTCTTTTTGTCAATTGGCTTAGGCATA
517 TCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * *
1044818 CGGAGTTCATTCCTAGTCTAAGATCTG-ACC-GAACTGACGATTGTGGCTGCAGGATCGACAGCA
578 CGGAGTTCATTCCCAGTCTAAGATC-GAACCAG-ACTGAGGGTTGCGGCAGCAGGATCGACAGCA
* * * * * *
1044881 GGCAGAGGGGGACCCGATCGATCCCCGGCATGCGCATCCTGGCCCTTTGGCCGGCTGAGCGCCCG
641 TGCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * * *
1044946 TACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTC
705 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * *
1045011 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATG-TTGGCTCGGGCATGTGC
770 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGC
** * * *
1045075 TGGTGCTACATTTTTCTTCACCTGGGCACCATCGTCGGAGCATCACCGGAGAACCTGTCC-GA
835 TGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGA
* * *
1045137 CGACATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGTGATGGGTAC
1 -G-CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
1045202 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACGCCCTTGA
64 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
1045267 AGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTT
129 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
1045332 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
1045397 AAAAAATACAAGGATCACGTCTACCGAGTTTGCGGCCAAAAGTCCTTCCAAAAAAATTTTAAAAA
259 CAAAAATACAAGGATCACGTCTACCAAGTTTG-GGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* *
1045462 AT-CTCAAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
323 ATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
1045526 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
387 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * * ** *
1045591 AGCAATATGAAGATGTGCCTAAACCCACCAACCACCTTATTAATCCATGGCTTGCGCATCCCGTC
452 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
1045656 TCTCTAGCCGGCGTAGTGCCCGTCTGCCCGTCCGCTTGCTCGTTTTGTCAGTTGGCTTAGGCATA
517 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CC-C--GCTCGTTTCGTCGGTTGGCTTAGGCATA
** * * * * ** * *
1045721 CAAAGTTCATTCCTAGACTCAGATCAAACTGGACTGAGGGTTGTGGCAGCAGGATCAACAGCATG
578 CGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCATG
* * * *
1045786 CAGA-GGGCACCCAACCGATCCCTGGCTTGCGCATCCCGCTCCTCTGGCCGGCTGAGTGCCCGCA
643 CAGAGGGGGACCCGACCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
1045850 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
707 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
*
1045915 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGTTGGGCTCGGGCATGTGCTG
772 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* ** ** * * **
1045980 GTGTCGCATTTTTCTTTGCCGGGATACCAAT-GTCGGTGCGTCATCGGAGAACCTGACCGGA
837 GTGCCGCATTTTTCTTCACCGGGGCACC-ATCGTCGGAGCATCGCCGGAGAACCTGACCGGA
* *
1046041 GGCATTGGGGTTCTGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
1 -GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
1046105 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AACCTTGAGAACTCACACCCCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * * *
1046169 GAGCATTTGAGATTTTACAGGTTTGCTGCGAGTAGCTATTAAAGTGTTTGAAATTGGGACATTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
1046234 TTTCAAATGGTCAGAAAATCTTATACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
195 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
1046299 AAAAATACAATGATCATGTCTACCAAGTTTGGTGCCAAAACTCCTTCTGAAAAAATTTTAAAATA
260 AAAAATACAAGGATCACGTCTACCAAGTTTGG-GCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
*** * * *
1046364 TCCTGAACCGTAAAAAGTTTTGGAAATCGTAAAAAATAGAAAATGAGTCATCTTGCCATGAAACT
324 TCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
1046429 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAG
389 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * *
1046494 AAATATGAACATGTACCTAAACCCACCTGCCACCCTATCGATCCACGGCTTACGCATCCCGTCTC
454 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
1046559 TCTGGCTGGTGTAGTGCCCGCCCGCCCGATCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATG
519 TCTGGCCGGCGTAGTGCCCGCCCG-CC---CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * *
1046624 GAGTTCATTCCCAGTCTCAGATCGAACC-GAACTGAGGGTTGCGGTAGCAGGATCGACAGCATAC
580 GAGTTCATTCCCAGTCTAAGATCGAACCAG-ACTGAGGGTTGCGGCAGCAGGATCGACAGCATGC
* * * ** *
1046688 AGAGGGGCG-CCCAACCGATCCCCGCCTTGCGCATCCTGCCCCTCTGGTTGGCTGAGTGCCCGCA
644 AGAGGGG-GACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
1046752 CGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
707 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * *
1046817 TCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGACAGCACATGTTGGGCTCGGGCATGTGCTG
772 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* ** * * *
1046882 GTGTCC-CATTTTTCTTCGCCGGGATACCAAT-GTCGGTGCATCGTCGGAGAACCTGACCAGA
837 GTG-CCGCATTTTTCTTCACCGGGGCACC-ATCGTCGGAGCATCGCCGGAGAACCTGACCGGA
* *
1046943 GGCATTGGGGTTCTGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
1 -GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
1047007 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
1047072 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAGGGACACTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
1047137 TTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAA----TTT-TGCATGCCAAC
195 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
1047197 AAAAATACGAGGATCACGTCTTCCAAGTTTAGGGCCAAAACTCCTGT-CGAAAAAATTTTAAAAA
260 AAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCT-TCCGAAAAAATTTTAAAAA
* *
1047261 AT-CTCGAACCGCCAAAAA-TTTCAAAAATCGTGAAAAACAGAAAACGAGTCGTCTTGCCATGAA
323 ATCCT-GAACCG-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
1047324 ACTTCACGTGAAGGCCTAACGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCACA
386 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* *
1047389 CAAAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGCATCCCGT
451 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * **
1047454 CTCTCTGGCCGACGTAGTGCCCGCCCGTCTGCCCGCCTGCTCGTTTCAACGGTTGGCTTAGGCAT
516 CTCTCTGGCCGGCGTAGTGCCCG-CC--C-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
1047519 ACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACTGAGGGTTGCGGCTA-CAAGATTGGCAACC
577 ACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGC-AGCAGGATCGAC-A-G
** ** *
1047583 CAT--AGAAAGGGACCCGGTCGATCCACGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCT
639 CATGCAGAGGGGGACCCGACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
1047646 TGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGT
703 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * *
1047711 TCATTCCCAGTCTAAGATCAGACGGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCACGT
768 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGT
* * * * *
1047776 GCTGGTGCTGTATTTTTCTT-ACCGAGGCACCA---TC---G--T---CGGAGAACTTGTCCGGT
833 GCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG-
*
1047829 G
897 A
* * *
1047830 GCATTAGGGTTCCGACTATCGGGGGGGCCGGAGGGGGTGTGCACACATGATGTGCGATGGGTGCT
1 GCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
1047895 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTGAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
1047960 GAGCATTAGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
1048025 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTTTCTACATGCCAAA
195 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
1048090 AAATAATAAAAGGATCAGGTCTACCAAGTTCGGGGGCAAAACTCCTTCCGAAAAAATTTTAAAAA
260 AAA-AATACAAGGATCACGTCTACCAAGTT-TGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
1048155 AT-CTCGAGCCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
323 ATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * * *
1048219 CTTGATGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGGATGC
387 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * * * *
1048284 AGAAATATGAAGATGTGCTTAAACCCACCTACCACCTTATCGATCCATGGGTTACGCATTCCTAG
452 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA-TCC---
* * * ** *** * ** *** *** *
1048349 TCTAAGATCAGATCGAACTGAG-GGTTGCGGTAGAAGGATCGATAGCACGCAGAGGGGGACCCAA
513 -C---G-TC---TC--TCTG-GCCG--GC-GTAG--TGCCCGCCCGCCCGC-CCGCTCGTTTC-G
* * * * * ** * * * ** * ** * *
1048413 TCGATCCCCGACTT-GCGCATCCCGCCTT-TTTGGCCAG-CTGAGCGCCCGCACGCTCATTTCGT
560 TCGGT---TGGCTTAG-GCATACGGAGTTCATT-CCCAGTCT-A-AGATCGAAC-CAGA-CT-GA
** * * * ** *** * ** * **** *
1048475 GGGTTGAC-TTAG--GCATACGGA-ATTCATTCCCAGTCTGAGCATACGGAGTTCATTCCTAGTC
615 GGGTTG-CGGCAGCAGGAT-C-GACA-GCATGCAGAGGGGGACCCGACCGA--TCCCGGCTTG-C
** *** ** * * * * * ** *
1048536 TAAGATCG--GATC-GGACCAAGGGT-TGCGGCAGCACATGCTGGGCTCG-GGCATGTG-C-T-G
673 GCATCCCGCCCCTCTGG-CC--GGCTGAGCGCCCGCAC--GCTCGTTTCGTGG-GT-TGACTTAG
* * * ** ** * ** * * * **
1048593 G--TGCCGCATTTTTC-TTCGCTGGGGTACCACCA-ACGGAAAACCTGACTGGCGGCA-T-TGGG
731 GCAT-ACGGA--GTTCATTC-CCAGTCTA--AGCATACGG---AGTTCA-T-TC-CCAGTCT-AA
* * * * * * * * * * * *
1048652 GTTCCG-GC-GATCGGGGGGTGTG-C-GCACATGATGTGCGATGGGTGC-TGGTACTTG-GCC-C
783 GATCAGACCGGACCGAGGGTTGCGACAGCACATGCTG-G-GCTCGG-GCAT-GTGCTGGTGCCGC
** ** * * * * * *** * **
1048710 -TTATATTGGCCCCCTATCC--CTCACCAAACCT-TGAGAACTC-AC--ACCCCCTTA-AAGA
844 ATT-T-TT---CTTC-A-CCGGGGCACC-ATCGTCGGAGCA-TCGCCGGAGAACCTGACCGGA
** *** * * * ** *** *** * * * * *
1048765 GCATTTGAGATTTTATAGGTTTGCTGCGAGTAGCCATTAAAATGTCTTAAATGGGGACACT-TTT
1 GCA-TTG-GGGTTCCGACG-AT-C-G-GGGGGGCC-----GGGGGGGT--GTGCGCACA-TGATG
* **** * * * * **** * *** *
1048829 TTCGAAT-GGT-CACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA
52 TGCG-ATGGGTGC-TGGTA-CTTG-GCCCTT--A--TATTGGC--CCCCTATCCCT-CAT-CAAA
* **** * * * * *
1048892 CCAAAATACAAGGATCACGTCTAC-CAAGTTTGGAACTAAAACTCCTTTCGAAAAAATTTTA-AA
105 CC----T-CGA-GA--AC-TC-ACACCCCCTT---A--AAGA-GCATTT-G---AGATTTTACAG
*** * * * * *** * ** *** * * ***
1048955 AAAT-C--CC-G-AACCGTAAAAAGT-TTTGAAAATCATGATA--AATAGAAAACGAGTCGCCTT
150 GTTTGCTGCCAGTAGCCAT-TAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATG-GTCACAAA
** * * ** * * *** * * * ** *
1049012 GCCATG-AAACTTCACGTGAAGGCTTAAG--GGACCGTTGTATGAATTTACAAGCCATAAAATGG
212 ATCTTGTACACTT----TG-AGTTTTTAGCTGAATTTTTTTGTGCA-TGCCAA--CA-AAAAT-A
* ** * * * * * ** * *
1049074 CATTGG--CACGTAGAACTAAGAAGATAT--GCCTAAAC-CC-ACCTACCACCATATT----GAT
267 CA-AGGATCACGT----CTACCAAG-TTTGGGCCAAAACTCCTTCCGA-AAAAATTTTAAAAAAT
* * ** * * **** ***** **** ** ** **
1049129 CC--ACAGCTTCCACA-TCTC-GCCTTC-TGGCCGGCGTAGTGCCCG-CCCG-CCCGCC-TG-CT
325 CCTGA-ACCGTAAAAAGTTTCAAAAATCGT-G-AAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * ** * * * * **
1049185 CGTTTCGTCAGTG-A-GCTT-A-GG--CATACGGAGTTCATTT-CCAGTC-T-AAGATCAG-ACC
387 C--TTC-AC-GTGAAGGCTTAAGGGACCAT-TGTA-TGAATTTACAAGCCATAAAAAT-GGCATT
** * ** ** * * ** * * *
1049240 GG-AC-C-GAGGGT-TG-AGGTAGTAGGATCGACAGCACATAGAAGGGGACCCGATCGATCCCCA
445 GGCACGCAGA-AATATGAAGAT-GT-GCCTAAAC-CCACCT---A--CCACCCTATCGATCCACG
* * * * * ** *
1049300 GCTTGTGCATCCCGCCCCTCTGG-C--CG-ACTG--AG--CGCCCGTACGCTCGTTTCGTGGGTT
501 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
** * * * * *
1049357 GATTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTTACGGAGTTCACTCCCAGTCT-AAGATCG
566 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-GA----A---CCAGACTGAGGGTTG
* ** * *
1049421 AACCAGACCGAGCAGGATTAACAGCACGCAGAGGGGGACCCGACCGATCCTCGACTTGCGCATCC
621 ---C-G-GC-AGCAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCC-CGGCTTGCGCATCC
* * *
1049486 CGTCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGAATAC-GAGTTC
679 CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
1049550 ATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC-AG
744 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-
* * * * ** *
1049614 CAGCACATGCTGGGCTTGAGCATGTGCTGCTACCGCATTTTTCTTCGTCGGGGCACCATCGCCGG
808 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGG
*
1049679 AACATCGCCGGAGAACCTGACC-GA
873 AGCATCGCCGGAGAACCTGACCGGA
* * * *
1049703 CGTCATTGGGGTTCTGGCGATTGGGGGGGCC-GGGGGGTGTGCGCAAATGATGTGC-AGTGGGTG
1 -G-CATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA-TGGGTG
* * **
1049766 CTGGTGCTTGGCCTTTATATTAACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
63 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
1049831 AAGAGCATTTGAGATTTTGCAGATTTGCTTCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
128 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
1049896 TTTTTCAAATGGTCACAAACTCTTGTACACTATGAGTTTTTAGCTGAATTTTTTTGCGCATGCCA
193 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
*
1049961 A-ACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
258 ACA-AAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * *** * * *
1050025 ATATCCTGAACCGTTAAAAGTTTTGGAAATTGTGAAAAATAGAAAATGAGTCATCTTGCCATGAA
321 AAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
1050090 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATG
386 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
*
1050155 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
451 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
** * *
1050220 CTCTCTGATCGACATAGTGCCTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
516 CTCTCTGGCCGGCGTAGTG-C--CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * ** * * * * * * *
1050285 ACGGAGTTCATTCCTAGTGTAAGATTGGACTGGACCGAGGGTTACGACAACAAGATCGGCAGCAC
577 ACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCAT
* ** * * **
1050350 GCAGAGGGGGACTCGGTCGATCCTCGTCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCTTGC
642 GCAGAGGGGGACCCGACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* *
1050415 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTAAGCATATGGAGTTCA
706 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * *
1050480 TTCCCAGTCTAAGATC-GAACCAGATCGAGGG-T-CGGCAGCATATGCTGGGCTCGGGCATGTGC
771 TTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGC
* ** * * * *
1050542 TGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGAAACATTGTCGGAGAACCTGACC-GA
835 TGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGA
* * *
1050604 CGGCATTGGGGTTCCGACGATTGGGGGGGCC--GGGGG-GTGCACAAATGATGTGCGATGGGTGC
1 --GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
1050666 TGGTGCTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
64 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
1050731 AGAGCACTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
129 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
**
1050796 TTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* ** *
1050860 -AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTAATTCCAAAAAAATTTTAAAAA
259 CAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
1050924 AT-CTCAAACCGTAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACGAGTCGTCTTGTCATGAAA
323 ATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
1050988 CTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCACAC
387 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
*
1051053 AGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
452 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
*
1051118 TCTCTGGCCGACGTAGTGCCTGTCGGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
517 TCTCTGGCCGGCGTAGTGCC---C-G-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *** * * **
1051183 ATGGACTTCATTCCCAGTTTAAGATC-AGACCAGA-TCGGGGGTTGCGATTGTACGATCGGTAGC
577 ACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACT-GAGGGTTGCGGCAGCAGGATCGACAGC
* *
1051246 ACGCAGA-GGGG----GACC--T--C-GCTTGCGCATCCCGCCCCTCTGGACGGCTGAGCGCCCC
640 ATGCAGAGGGGGACCCGACCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCC
* * * *
1051301 GCACGCTCGTTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGCATAGGGAGTT
704 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* ** * * *
1051366 CATTCCCAGTCAAAGATCAGACCACACTGAGGGTTGCGGCAGCACATGCT-GGCTCAGGCATGTG
769 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
* * * * *
1051430 CTGGTGTCACATTTTTCTTCGA-TGGGGCACCATCGTC-GAGCATCGCCGGAGAACCTAACTGGC
834 CTGGTGCCGCATTTTTCTTC-ACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG-
*
1051493 G
897 A
*
1051494 GCATTGGGGTTCCGGCGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
1 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
1051557 GTACTTTGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTTGAGAACTCACACCCCCTTAAAG
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
1051622 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTT
131 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
1051687 TTCAAATGGTCACAAAATCTTGTACACGTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
196 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * ** * *
1051752 AAAATGCAAGGATCACGTCTACGAAGTTTGGGGTAAAAAAATCCTTCCGAAAAAGTTTTAAAAAA
261 AAAATACAAGGATCACGTCTACCAAGTTT-GGG-CCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * * * *
1051817 T-CTCGAACCGCAAAAAGTTTCGAAAGTCATGAAAAATAAAAAACGAGTGGTCTTGCCGTGAAAC
324 TCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
1051881 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCA
388 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
1051946 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCGTCT
453 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * **
1052011 CTCTGGCCGGCGTAGTGCCCGCCCGCCCATCCGCCCGCTTGTTTCGTTGGTTGGCTTAGGCATTT
518 CTCTGGCCGGCGTAGTGCCCGCCCG--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * *** *****
1052076 GGCGATCATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTACGGCAGAATTTTTTTGTGCATGC
579 GGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCATG-
* ***** ** * * * *** * * ******
1052141 CAACAAAAATACAAGGATCACG-TCTACCAAGTTTGGGGCCAAAAC-TCCTTCTGAAAAATTTTT
643 C-AGAGGGGGAC-CCGA-C-CGATC--CC-GGCTT-GCG-CATCCCGCCCCTCTG---GCCGGCT
* * ** * ***** ** * * *
1052204 AAAGCATCCCAAAC-CGTAAAAAGTTTCAAAAATCATGAAAAATA-GAAAAC-GAG-TCATCTTG
696 -GAGC-GCCCGCACGC-T----CGTTTCGTGGGT--TG--ACTTAGGCATACGGAGTTCA--TTC
* * * ** * * ** ** ***
1052265 CCA-T-GAAACATCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACA-AGCCATAAAAATGG
748 CCAGTCTAAGCAT-ACG-G-A-G-TTCA--TTCC-CAGTCT-AAGAT-CAGA-CCGGACCGA-GG
* * * * * * **** *** * * ** * *
1052327 TATTG-G-CATGCAAAAAT-ATGAAGAT-GTGCCTAAACCCACCTACCAC-CCTATCGATC-CAC
801 -GTTGCGACA-GC--ACATGCTG-GGCTCG-GGC-ATGTGCTGGTGCCGCATTTTTC-TTCAC-C
* * * * ** * * *
1052386 GGCTTGCGCATCCCATCTCTCTG-GC--CGGCGTAGTGCCCGCCCGCTCGT
857 GG---G-GCA--CCATC-GTCGGAGCATCGCCGGAGAACCTGACCG---GA
* * * * * * ** *** * * * * * *
1052434 CCGTT--CGTTTC-ATCGGTTGGCTTGGGCATATGGAGTTCATTCCCAGTCTAAGAT-TG-GACT
1 GCATTGGGGTTCCGA-CGATCGG-GGGGGC-CGGGGGGGT-GTGCGCA--C-ATGATGTGCGA-T
*** ** * * * ** * * **
1052494 AGACCGAGGGT--TGCGGCAGC--AGGATTGGCAGCATA-CGAGGGGGACC-CGGTCAATTCTCG
58 -GGGTGCTGGTACT-TGGC-CCTTA-TATTGGCCCCCTATC--------CCTC-ATCAAACCTCG
* * * *** ** * * *
1052553 -GCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCTTGCACGCTCGTTT-CGTGGGTTGACTTA
110 AG--AACTCA-CAC-CCCCT-T-----AAAGAGCATTTG-A-GAT--TTTAC-AGGTTTG-C-T-
* * * ** * ** * * ** *** * *
1052616 GGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCA-TTCCCAGTCTAA-GATCAGACCT
157 -GC-CA-GTAG-CCATT-AAAGTGTCTG-AAATGG-GGACACTT--TTTTCAAATGGTC--A-C-
* *** * * * * * *** *
1052679 GATGGAGGGTTGCGGTAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCACCG
209 -A--AAATCTT---GTA-CAC-T-TTGAG-TT-----T-T--T--AGCTGAATTTTT-TTGTGCA
* * * *** ** ** ** ***
1052744 GGGC-ACCATCGT-C--GGAGAAC--CTGACCGGTGGCTTTGGGGTTCCGACGA-TCGGGGGGCC
253 TGCCAACAAAAATACAAGGATCACGTCT-ACC--AAG-TTT-GGG--CC-AAAACTC---CTTCC
****** * ** * * *** * *** * *** ** * ** * * * **** *
1052802 G-GGGGGGTGT-GCACA-CATGATGTGTGATGGGTGCTGGTACTTGGCTCTTATATTTGCCCCCT
307 GAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGT-TTCAAAAATCG-T-GAAAAATAGAAAACG
* ** * *** * * * *
1052864 A-TCCCTCATCAAACCTTGAGAAC-TCAC---ACCCCCTTAA-AGAGCATTTGAGATTTTACAGG
369 AGT-CGTC-T--TGCCATGA-AACTTCACGTGA-AGGCTTAAGGGACCA-TT--G-TATGA-A--
* * * * * * **** * * *
1052923 TGTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG--GGACACTTTTTTCAA-ATG-GTCACAAA
421 T-T--T-ACA--AGCCATAAAAATG---GCATTGGCACG-CAGAAATATGAAGATGTG-C-CTAA
** * * ** * * * ** **** * * **** * * *
1052984 ATCTTGTACACTTCTACTTTTTAGCTGAATTTTTTTGTGCATGCCAAAGAAAATACAAGGATC-A
474 A-C--CCAC-CTACCACCCTATCGATCCA-CGGCTTGCGCAT-CC--CGTCTCT-C-TGG-CCGG
* * * ** * ** * * **** ** ** ***
1053048 CGT-CTACCAAGTTTCG--GGCCATAACTCCTTCCGAAAAAATT---TTA-AAATATCCCAAACC
528 CGTAGTGCC-CG-CCCGCCCGCC--CGCTCGTTTCG--TCGGTTGGCTTAGGCATA-CGGAGTTC
* **** * * ** * * * * *** *
1053106 GTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGC--CATGAAACTTC-ACGT
586 ATTCCCAG--TCTAAGATC--G---AA-CCAGACTGAG--G-GTTGCGGCA-GCAGGATCGAC-A
* * ** * * * * * * **
1053168 GAAGGCTTA-AGGGACCATTGTA-TGAATTTACAAGCCATAAAAATAGCATTG-GCATGCAG-AA
638 GCATGCAGAGGGGGACC--CG-ACCG-A--T-C---CC--------GGC-TTGCGCATCCCGCCC
* * ** ** * * **** * * * * **
1053229 ATATGAAGATGTGCCT-A-AACCCGCCTAC-CACGCTATCGAT-CCACGGCTTACGCATCCCGTC
684 CTCTG--GCCG-G-CTGAGCGCCCG-C-ACGCTCG-TTTCG-TGGGTTGACTTAGGCATACGGAG
** * * *** ** * * * * * * *
1053290 TCTC-TGGCC-GACGTAGTGCCCGCCCGCCCGTTCGTTTCATCGGTTGGCTTAG-GCATACGGAG
741 T-TCATTCCCAGTC-TA-AG--CATACG-GAGTTC-ATTC-CCAG-T--CTAAGATCAGACCG-G
* * ** * * * ** * * *
1053352 TTCACTCCCA-GTTTAAGATTAG-ACCA-GACCGAGGGTTTTGGCA-GTAGGATCGATAGCATGC
794 ---A--CCGAGGGTTGCGA-CAGCA-CATG--C-TGGGCTCGGGCATGT--GCT-GGT-GC-CGC
****** ** * * * * * *** *
1053413 A-GAGGGGT-ACCCAGTCAATCC-CCGGCTTGCGCATC-CC-G-CCCCTCTGGCC--A
844 ATTTTTCTTCACCGGGGC-A-CCATCGTC-GGAGCATCGCCGGAGAAC-CTGACCGGA
* *** * * ***** ** ** ** * * *
1053463 GC--TGAGCCCCCGCATGCTC-ATTTTGTTGGTTGACT-TAG-GCATATGGA-GTTC-AT---TC
1 GCATTGGGGTTCCG-ACGATCGGGGGGGCCGGGGGGGTGT-GCGCACAT-GATGTGCGATGGGTG
** ** * **** * * ** * ***
1053518 CAAGT-CTAAG--C--ATA-CGGAGTTC-ATTCC-CAGTCTAAGATC-AG-AC-CAGACCGAGGG
63 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-TCAAACCTCGAGAACTCACACC--CCC
*** ** * *** * ** * * ** * ***
1053572 TTGGGGCAGCACATGCTG-GGCT-CGGGCATG-TGCTAGT-GCCA--CATTTTTCT-TCGTCGGG
125 TTAAAG-AGCATTTG-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGG
** *** * * * * * * * * * **** *
1053630 G-CACCATCGCCGGAGCATCG-CTAGAGAA-CCTGAACGACGGCATTGGGGTACCGGC-G-A-TC
187 GACACTTTTTTC--A-AATGGTC-ACAAAATCTTGTAC-A---CTTTGAGTTTTTAGCTGAATTT
**** * * * ** * * * ** * *
1053689 GGGGGGGCCGGGGAGTTGTACGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA-TATTG
244 TTTTGTG-C----A--TG--CCAACA-AAAATAC-AAGGAT-CACGT-C-T--ACC-AAGT-TTG
* *** ** ** ** * * * * * * *
1053753 GCCCCCTA-TCGC-T-C-ATCAAACCTCGAGAACTCAT-ACCCCCTTAAAGAGCATTTGAGATTT
291 GGCCAAAACTC-CTTCCGAAAAAATTTTAAAAAATCCTGA--ACCGTAAAAAG--TTTCA-A---
* * ** * * * *
1053813 TACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCACA
347 -A-AA---T-C-G-T-G-A---A--AAA---T-AGAAA-AC-GAGTCGTCTTGC-CAT-G-----
* ** * * ** * * *
1053878 AAATCTTGTACACTTTG-AGTTTTTAGCTGA--ATT-T-T-TTTTTGCATGCCA-ACAAAACT-A
384 AAA-C-T-T-CAC-GTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATA-AAAA-TGG
* * * ** ** * * * * ** *** ***
1053935 CA-AGG-A-TCACATCTACCAAG-TGCGGCCAAAACTCCTGCCGAAAAAATTTAAAAAAATCC-C
441 CATTGGCACGCAGAAATATGAAGATG-TGCCTAAAC-CC-ACC-TACCACCCT--ATCGATCCAC
* **** *** * * *** ** ** * ***** * **
1053995 GAAC---CGCAAAAAGAT-TCAAAAGTCATGAAAAATAGAAAACGAGTCATATTGCCATGAAAC-
500 G-GCTTGCGCATCCCG-TCTC-TCTGGC-CG--GCGTAG--TGCCCGCCCGCCCGCC-CG-CTCG
* ** * * ** * * * * * * ** *
1054055 -TTCAT-GTGAAGGCTTAAGGGACTATCGTA-TGAATTTACAAGCCATAAAAATGGCA-TTGGCA
555 TTTCGTCG-GTTGGCTT-AGGCA-TA-CGGAGTTCA-TTCCCAGTC-T-AAGATCGAACCAGAC-
*** ** * * * * ** ****** * * *
1054116 TGCAGAAAT-ATGAAG-ATG-T-GCCTA-AACCCA-CCTACCACCCTATCAATCCACGGCTTGCG
612 TG-AGGGTTGCGGCAGCAGGATCGAC-AGCATGCAGAGGGGGACCCGACCGATCC-CGGCTTGCG
* * * * * * ** ** * * *
1054175 CATCGCGTCTCC-CAGGCCGGC-GTAGTGCCCGCCCGCCCG-CCCGCCCGCTCG-CTT---C-TT
674 CATCCCG-CCCCTCTGGCCGGCTG-AGCGCCCGCACGCTCGTTTCG-TGGGTTGACTTAGGCATA
* * * * *
1054232 CGG-GTGGC-TT---AG-----GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAG
736 CGGAGT-TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * * *** **
1054287 GGTTGTGGCAGCACATGCAGGGCTCGAGCATGTGCTGGTGGTACATTTTTCTTCGTCGGGGCACC
800 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACC
* * * *
1054352 ATCGCCGGAGCATCGTCAGAGAACCTGGCCAGCG-
865 ATCGTCGGAGCATCGCCGGAGAACCTGACC-G-GA
* * * *
1054386 GCATTGGGGTTCCGACAATCGGGGGGGCCAGGGGGGTGTGCACACATGATGTGCGATGGGTGGTG
1 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
1054451 GTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
1054516 AGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGGGAACACTTTT
131 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
1054581 TTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGTATGCCAACA
196 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * *
1054646 AAAATAAAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTCCTT-TGAAAAAAATTTTAAAAAA
261 AAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAA
*
1054710 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
324 TCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
1054775 TCACGTGAAGGCTTAA-GGACCGTTGTATGAATTTACAAGCCATAAAAATGGCA-TGGCATGCAG
389 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
1054838 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCGTCTC
454 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * *
1054903 TCTGGCCGGCGTAATGCCCACCCGCCCGCCTGCACGCTCGTTTCATCGGTTGGTTTAGGCATACG
519 TCTGGCCGGCGTAGTGCCCGCCCGCCCG-C--C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * * ** ***
1054968 GAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGATTACGGCAGTAGGATTGGTAGCACAT
580 GAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCATGC
** * * * * *
1055032 AGAGGGGGACCCTCCCGATCCCCGGCTTGCACTTCCCACCCCTCTGGCGGGCTGAGCACCCGCAC
644 AGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
1055097 GCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
708 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * * * * *
1055162 CCCTGTCTAAGATCAGACCGGACCGAGTGTTGTGGCAGCACATGCGGGGCTCAGGCATGTGTTGG
773 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * *
1055227 TGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTAACTAGGG
838 TGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC-CGGA
** * * * *
1055288 GCATTGGGGTTCCGACGATCGGGACGGCC--GGGGGTGTGTGCACATGATTTGTGATGGGTGCGG
1 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* ** * *
1055351 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAACCCTCTTGAACTCACA-CCCGTAGAAA
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT-TAAA
*
1055415 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
1055480 TTTCAAATGGCCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
195 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
1055545 AAAAATAAAAGGATTA-GATCTACCATGTTTCGGGCCAAAACTCCATCCGAAAAAATTTTAAAAA
260 AAAAATACAAGGATCACG-TCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
1055609 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
323 ATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
1055674 TTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTA
388 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * *
1055739 TAAATATGACGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCAACCCGTCT
453 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
1055804 CTCTGGCCGACGTAGTGCCCGCCCACCCTATCGATCCACGGCTTACGCATCTCGTCTCTTTGGTC
518 CTCTGGCCGGCGTAGTGCCCGCCC-GCC---CG--CC-C-GC-T-CG--TTTCG--TC---GGTT
* * ** ** ** *** ** * * ** * * *
1055869 GACGTAGTGCCCGCACGCCCGCCCGCGCGCTC-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
566 GGCTTAG-G--CATACG-GAGTTCATTC-C-CAG--TC-TAAGAT--C-GAACCAGACTGAG--G
* * * * ** * * * *
1055933 ATTATC--CAGTCTAAGATCAGACCA-AACTG-AG-GGTTGTGGCAGCAAGATCGGCA-GCAGAC
617 GTT-GCGGCAG-C-AGGATC-GA-CAGCA-TGCAGAGG--G-GG-A-CCCGA-CCG-ATCCCGGC
** * * ** * * * * * * * * * *
1055992 AGAGGGGGA-CCCGACCAAT-T-CCCGGCT-TGCTCATC-C-C-TTCCTTCTGGCCGGCTGAGCA
669 --TTGCGCATCCCG-CCCCTCTGGCCGGCTGAGCGC-CCGCACGCTCGTT-TCG-TGGGT-TG-A
** * * * * ** *
1056050 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCA-TAC-AGAGTTCATTCCCAGACTAAGCATACG
726 --CTTA-G-GCA-TACG-GAGTTCA-TT-CCCAGT-CTA-AG-C----------------ATACG
* ** * * * *
1056113 GAGTTCATTGCCAGTCTAAGATTGGACCAGACCGAGGGTTGC-ACCAGCCCATTGCTAGGC-AGG
764 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCACA-TGCTGGGCTCGG
* * * * * *
1056176 GCATGAAGTTGGTGCCGGCA-TTTTCTTCGCCGGGGCACCATTCAATCGAAGCATCGTCGGAGAA
827 GCATG-TGCTGGTGCC-GCATTTTTCTTCACCGGGGCACCA-TC-GTCGGAGCATCGCCGGAGAA
*
1056240 CCTGACCGGC
888 CCTGACCGGA
* * *
1056250 GCATTGGGGTTCCGGGACGATCGGGGGGGCCGGGGTGGGTGCGCGCACATGATTTGTGAT-GGTG
1 GCATTGGGGTTCC--GACGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTG
*
1056314 CTGGGTACTTGGCCCCTTATATTGGCCCCCTACCCCTCATC-AACCTCTGAGAACTCACACCCCC
63 CT-GGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACTCACACCCCC
*
1056378 TTAAAGAGCATTTTAGTATTTTACAGGTTTTGCTGCCAGTAG-CATTAAAGTGTCTGAAAT-GGG
125 TTAAAGAGCATTTGAG-ATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
1056441 ACACTTTTTTCAAATGGTCACAAAATCTTGTTACACTTCGAGTTTTTAGGCTGAA-TTTTTTGTG
188 ACACTTTTTTCAAATGGTCACAAAATCTTG-TACACTTTGAGTTTTTA-GCTGAATTTTTTTGTG
1056505 CATGCC-A-AAAAATACAAGGATCACGTCTACC-AGTTTGGGGCC-AAACT-CTTCCGAAAAAAT
251 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAAT
* * * *
1056565 TTTTAAAAAT-CTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
315 TTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
1056629 CCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCAT
379 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
1056694 TAGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
444 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
1056759 ATCCCGTCTCTCTGGCCGACATAGAGCCCGCCCGCCCGCCTGTCTGCTCGTTTCGTCGGTTGGGT
509 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC---C-GCTCGTTTCGTCGGTTGGCT
* * **
1056824 TAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACAGAGGGTTG-GAACAATAGGAT
570 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCG-GCAGCAGGAT
** * * * * * *
1056887 CGGTAGCACGCAGAAGGGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTAGCTGGCTG
633 CGACAGCATGCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * ** * *
1056952 AGCACCCGTACGCTCGTTTTGTGGGTTGACTTAGATATAGGGAGTTCATTCCCTGTCTAAGCATA
697 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
* * * *
1057017 CGGAGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
762 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGG
* ** * ** * **
1057082 GCATGTG-TTGTGTTGTATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCAACGGAGAACCTG
827 GCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
*
1057146 ACCGGT
892 ACCGGA
* * ** *
1057152 GACATCGGGGTTCTGGTGATC-GGGGAGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
1 G-CATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
1057216 TGGTACTTGGCCCTTATATTGGAACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTC
64 TGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
1057281 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
128 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
1057346 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTCAGCTGAAGTTTTTTCTACATGCCA
193 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
1057411 AGAAAAATACAAGGATCACATCTACCAAGTTTGGGACCAAAACTCC-T--AAAAAAATTTTAAAA
258 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCCGAAAAAATTTTAAAA
*
1057473 AAT-CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAA
322 AATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
1057537 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
386 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
1057602 TAGAAATATGAAGATATACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
451 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
1057667 CTCTCTGGCCGGCGTAGT----GCCTGCCCACCCGCTCGTTTCGTCGGATGGCTTAGGAATACGG
516 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * *
1057728 AGTTCATTCCCAGTCTAAGATTGGACCAGA-TCAAGGGTTGTGGCAGTAGGATCGACAGCACGCA
581 AGTTCATTCCCAGTCTAAGATCGAACCAGACT-GAGGGTTGCGGCAGCAGGATCGACAGCATGCA
* * * * * * * * *
1057792 GAGGGGGACCTGGCCAATCCCCGGCTTGCACATCCCTCCCCTCTGGCTGGTTGAGCACCCGCACA
645 GAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* ** *
1057857 CTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTC
709 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
** * * * *
1057922 TTAGTCTAAGATCAGACTGGACCGAGGGTTAC-AGTAGCACATGCTGGGCTCGGGCATGTGTTGG
774 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * * *
1057986 TGCCGCATTTTTCTTCACCGGGGCACCATTGTCGGAG-A--ACC---TAA-TTG-GC-G-
838 TGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGA
* ** * * *
1058036 GCATTGGGGTTCCGATGATCGACGGGGCCGGGAGGGGTGTGCACACATGATTTGCGATGGGT-AT
1 GCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
1058100 GGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACATCGAGAACTCACACCCCCTTAT
65 -GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
1058165 AGAGCAATTGAGATTTTACAGGTTTCCTGCCAGTAGCTATTAAAGTGTCTGAAATGAGGACACTT
129 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
1058230 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
1058295 CAAAAA-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAA
259 CAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
** * *
1058359 ATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
323 ATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
1058424 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
388 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
1058489 GAAATATGAAGATATACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
453 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
1058554 CTTTGGCCGGCGT-GTGCCTGCCCGCCCGTCGACCCACTCGTTTCGTCAGTTGGCTTAGGCATAC
518 CTCTGGCCGGCGTAGTGCCCGCCCG-CC--CG-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * *
1058618 GGAGTTCATTCCCAGTCTAAGATCGGACCACACCGAGGGTTGGGGCAGTAGGATCGACAGCACGT
579 GGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCATGC
* * * * * *
1058683 AGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCC-CCCTTCTGGCCGGTTGAGCACCCCCAC
644 AGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
1058747 GTTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT
708 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
1058812 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAACACATGCTGGGCTCAGGCATGTGTTGG
773 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
** ** * * *
1058877 TGTTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACC-GA
838 TGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGA
* *
1058936 CGGCATTGGGGTTCCGACGATCGAGGCGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
1 --GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
1059000 TGGTAGTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAGACCCCCTTAA
64 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
1059065 AGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
129 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
1059130 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTCAATTTTTTTATGCATGCCAA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
1059195 CAAAAATACAGGGATCACGTCAACCATGTTTGGGGGCCAAAACTCCTTTC-AGAAAAATTTTAAA
259 CAAAAATACAAGGATCACGTCTACCAAGTTT--GGGCCAAAACTCCTTCCGA-AAAAATTTTAAA
* * * ** ** *
1059259 AAATCCAGAATCGTAAAAACTTTCGTAAATCGTGAAAAATAGAAATTGAGTCATCTTGCCATGAA
321 AAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
1059324 ACTTCACGTGAAGGCTTAACGGACCGTTGTATAAATTTACAAGCCAT-AAAATGGCATTGGCACG
386 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
*
1059388 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCTT
451 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
1059453 CTCTCTAGCCGACGTAGTGCCTGCCCACCCATCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
516 CTCTCTGGCCGGCGTA--G--TG-----CC--C-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* *
1059518 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACTGAGGGTTGCAGCAGTAGGAT
569 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACTGAGGGTTGCGGCAGCAGGAT
* * ** * ** * *
1059582 CGGCATCACACAGAGGGGGACCTGTTCGATCCCCGGCTTGGGCATCCCACCCCTCTGGCCGAG-T
633 CGACAGCATGCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCG-GCT
* * * *
1059646 GAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGCAT
696 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * *
1059711 ACGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATGCTGGACTCG
761 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCG
* * ** * *
1059776 GGCATGTGTTGGTGCCGAATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCGTCGTAGAACCT
826 GGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCT
1059841 GACC-GA
891 GACCGGA
** * *
1059847 CGGCATTGGGGTTCCGACGATTAGGGGGGCC-GGGGGGTGTGCGCACATTATGTGCGATGGGTGG
1 --GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
1059911 TGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTTGCGAGAACTCACACCCCCTT
64 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-T-CGAGAACTCACACCCCCTT
1059976 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
127 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
1060041 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
192 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
1060106 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAATATTTTAA
257 AACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAA-ATTTTAA
* * ** *
1060170 AGAATCCCGAACC-TCAAAAAGTTTTTAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATG
320 AAAATCCTGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
1060234 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCT
384 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
1060299 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTGCGCATCCT
449 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* *
1060364 ATCTCTCTGGCCGGCGTAGTGCCCGCCCGCTTGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGC
514 GTCTCTCTGGCCGGCGTAGTGCCCG-CC-C--GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * ** * ** **
1060429 ATACGGATTTCATTCCCATTCTAAGATTAAATC-GAACTGAGGGTTGCGATAGCAGGATCGGTAG
575 ATACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACTGAGGGTTGCGGCAGCAGGATCGACAG
** * * * *
1060493 CACACAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCACCCCTTTGGCCGGCTGAGCGTC
639 CATGCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
1060558 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
703 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * *
1060623 TCTTTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGGTCGGGCATGT
768 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGT
** ** * ** * *
1060688 GCTGGTGCCGCCCTTTTCTTTGCCGGTGTGCCATCGCCGGAGCATCGTCGGAGAACCTGACCGGC
833 GCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG-
1060753 A
897 A
* * *
1060754 GCATTGGGGTTCC-AGTGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCAATGAGTGCT
1 GCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
1060816 GGTACTTCGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCAAGAACACACACCCCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
1060881 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
1060946 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTTTTGCGTCCCAA
195 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAA
* * *
1061011 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAATAATTTTAGAAA
259 CAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
** * * * * **
1061076 ATCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAAAAAATGAGTCACCTTGCCATGAAAC
323 ATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
1061141 TTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAG-CATAAAAATGGCATTGGCATGCA
388 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* *
1061205 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTGCGTATCCCGTCT
453 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
1061270 CTCTGGCCGGCGTAGTGCCCGCACGTCCCCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGCATAT
518 CTCTGGCCGGCGTAGTGCCCG--C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** * * * * **
1061335 GGAGTTCATCCCCAGTCTAAGATCGAACCAAACTGAGGGTTGCGATAGTAAGATTGGCAGCACAC
579 GGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCATGC
* * * * * * *
1061400 AGAGGGGGACCCGACCGATCCCTGACTTACGCATCCCGCCCCTTTGGGCGACTGAGCACCCACAC
644 AGAGGGGGACCCGACCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
1061465 GTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
708 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
** * * * * * *
1061530 CCCAGTCTAAGATCAGACTAGATCTAGGGTTGCGGCAGGACATGCTGGGCTCGGGCATGTGTTGC
773 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
** * * ** * *
1061595 TGCCGCATTTTTCTTTGCCGGGGCACCATCGCCAGAGCATCGTTGGAGAACCT-AACTGA
838 TGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGA
** * * * *
1061654 CGGCATTGGGGTTCCGGTGATC-AGAGGGCCCGGGGGGTGTGCGCACATGATGGGCGATGGGTGC
1 --GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
1061718 TGGTACTTGGCCCTTATATTGACCCCCTATCCCTCACCAAACCTCAAGAACTCACACCCCCTTAA
64 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
1061783 AGAGCATTTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
129 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
1061848 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTGTTT-TGCATGCCA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT-TTTGTGCATGCCA
1061912 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAATATTTTAAA
258 ACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAA-ATTTTAAA
* * ** *
1061976 GAATCCCGAACC-TCAAAAAGTTTTTAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGA
321 AAATCCTGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* **
1062040 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGCATTGGCTT
385 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* **
1062105 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGGTTGCGCATCCTA
450 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
*
1062170 TCTCTCTGGCCGGCGTAGTGCCCGCCCGCTTGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCA
515 TCTCTCTGGCCGGCGTAGTGCCCG-CC-C--GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * ** **
1062235 TACGGATTTCATTCCCATTCTAAGAT-TAATC-GAACTGAGGGTTGCGATAGCAGGATCGGTAGC
576 TACGGAGTTCATTCCCAGTCTAAGATCGAACCAG-ACTGAGGGTTGCGGCAGCAGGATCGACAGC
** * * * *
1062298 ACACAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCACCCCTTTGGCCGGCTGAGCGTCC
640 ATGCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
1062363 GCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-G-G---------AG--T-----T-C-----T
704 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
1062404 --TTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGGTCGGGCATGTG
769 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
** ** * ** * * * *
1062467 CTGGTGCCGCCCTTTTCTTTGCCGGTGTGCCATCGCCGGAGCATCGTCTGAGAACCTGACTGGCA
834 CTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGG-A
* * *
1062532 GCATT-GGGTTCC-AGTGATC--GGGGGCC-GGGGGGTGTGCGCACATGATGTGCAATGAGTGCT
1 GCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
1062592 GGTACTTCGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCAAGAACTCACACCCCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
1062657 GAGCATTTGAGATTTTACAGGTTTGC-GCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
1062720 TTTCAAATGGTCACAAAATCTTTTACAC-TTGAGTTTTTAGCTGAATTTTTTTTTTGCGTCCCAA
195 TTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAA
* *
1062784 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAGAAA
259 CAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
** * * * * **
1062849 ATCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAAAAAATGAGTCACCTTGCCATGAAAC
323 ATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
1062914 TTCACGTGAAGGCTTAAGGGACAATTGCATGAATTTACAAG-CATAAAAATGGCATTGGCATGCA
388 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
1062978 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGATGGCTTGCGTATCCCGTCT
453 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
1063043 CTCTGGCCGGCGTAGTGCCCGCGCGTCCCCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGCATAT
518 CTCTGGCCGGCGTAGTG-CC-CGC--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** * * * * **
1063108 GGAGTTCATCCCCAGTCTAAGATCGAACCAAACTGAGGGTTGCGATAGTAAGATTGGCAGCACAC
579 GGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCATGC
* * * * * *
1063173 AGAGGGGGACCCGACCGATCCCTGACTTACGCATCCCGCCCCTTTGGGCGACTGAGCGCCCACAC
644 AGAGGGGGACCCGACCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
1063238 GTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
708 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
** * * * * * *
1063303 CCCAGTCTAAGATCAGACTAGATCTAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGCGTTGC
773 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
** * * ** * *
1063368 TGCCGCATTTTTCTTTGCCGGGGCACCATCGCCAGAGCATCGTTGGAGAACCT-AACTGA
838 TGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGA
** * * *
1063427 CGGCATTGGGGTTCCGGTGATCAGAGGGGCC-GGGGGGTGTGCGCACATGATGGGCGATGGGTGC
1 --GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
1063491 TGGTACTTGGCCCTTATATTGACCCCCTATCCCTCACCAAACCTCAAGAACTCACACCCCCTTAA
64 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
1063556 AGAGCATTTGAGATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
129 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
1063621 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
1063686 AAAAAATACAAGGATCACGTCTGCCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTT--AAA
259 CAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
*
1063749 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
323 ATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
1063786 GCCAAAACTC
Statistics
Matches: 18330, Mismatches: 3449, Indels: 2662
0.75 0.14 0.11
Matches are distributed among these distances:
863 8 0.00
864 4 0.00
865 38 0.00
866 9 0.00
867 4 0.00
868 1 0.00
869 11 0.00
870 182 0.01
871 417 0.02
872 40 0.00
873 284 0.02
874 9 0.00
875 21 0.00
876 146 0.01
877 16 0.00
878 4 0.00
879 517 0.03
880 234 0.01
881 272 0.01
882 285 0.02
883 382 0.02
884 117 0.01
885 257 0.01
886 67 0.00
887 63 0.00
888 406 0.02
889 277 0.02
890 120 0.01
891 312 0.02
892 364 0.02
893 291 0.02
894 259 0.01
895 23 0.00
896 55 0.00
897 413 0.02
898 651 0.04
899 318 0.02
900 907 0.05
901 1129 0.06
902 2493 0.14
903 1416 0.08
904 146 0.01
905 516 0.03
906 374 0.02
907 719 0.04
908 25 0.00
909 26 0.00
910 138 0.01
911 317 0.02
912 137 0.01
913 288 0.02
914 24 0.00
915 13 0.00
916 15 0.00
917 65 0.00
918 49 0.00
919 34 0.00
920 49 0.00
921 20 0.00
922 28 0.00
923 22 0.00
924 50 0.00
925 45 0.00
926 46 0.00
927 26 0.00
928 23 0.00
929 25 0.00
930 24 0.00
931 26 0.00
932 29 0.00
933 31 0.00
934 28 0.00
935 45 0.00
936 36 0.00
937 52 0.00
938 57 0.00
939 48 0.00
940 55 0.00
941 35 0.00
942 23 0.00
943 34 0.00
944 25 0.00
945 32 0.00
946 36 0.00
947 24 0.00
948 16 0.00
949 4 0.00
950 1 0.00
951 15 0.00
952 14 0.00
953 18 0.00
954 13 0.00
955 18 0.00
956 10 0.00
957 6 0.00
958 7 0.00
959 5 0.00
960 63 0.00
961 50 0.00
962 29 0.00
963 37 0.00
964 240 0.01
965 26 0.00
966 37 0.00
967 84 0.00
968 103 0.01
969 93 0.01
970 50 0.00
971 30 0.00
972 25 0.00
973 16 0.00
974 21 0.00
975 27 0.00
976 25 0.00
977 16 0.00
978 12 0.00
979 15 0.00
980 20 0.00
981 16 0.00
982 25 0.00
983 3 0.00
984 2 0.00
985 5 0.00
986 13 0.00
987 1 0.00
988 5 0.00
989 5 0.00
990 3 0.00
991 8 0.00
992 6 0.00
994 3 0.00
995 8 0.00
996 15 0.00
997 3 0.00
998 8 0.00
999 24 0.00
1000 19 0.00
1001 10 0.00
1002 21 0.00
1003 8 0.00
1004 2 0.00
1005 19 0.00
1006 6 0.00
1007 1 0.00
1009 1 0.00
1010 1 0.00
1012 2 0.00
1013 3 0.00
1014 1 0.00
1015 14 0.00
1016 5 0.00
1017 10 0.00
1018 9 0.00
1019 1 0.00
1020 2 0.00
1021 10 0.00
1022 14 0.00
1023 14 0.00
1024 21 0.00
1025 22 0.00
1026 13 0.00
1027 24 0.00
1028 9 0.00
1029 9 0.00
1030 10 0.00
1031 12 0.00
1032 18 0.00
1033 21 0.00
1034 18 0.00
1035 14 0.00
1036 7 0.00
1037 9 0.00
1038 5 0.00
1039 11 0.00
1040 6 0.00
1041 2 0.00
1042 3 0.00
1043 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCGAACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGG
GACCCGACCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
TTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGA
Found at i:1044104 original size:26 final size:26
Alignment explanation
Indices: 1044065--1044117 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1044055 GTTGACTTAG
1044065 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1044091 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1044117 G
1 G
1044118 ATAAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1045002 original size:26 final size:26
Alignment explanation
Indices: 1044972--1045024 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1044962 GTTGACTTAG
* *
1044972 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1044998 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1045024 G
1 G
1045025 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1045903 original size:26 final size:26
Alignment explanation
Indices: 1045874--1045926 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1045864 GTTGACTTAG
1045874 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1045900 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1045926 G
1 G
1045927 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1046812 original size:26 final size:26
Alignment explanation
Indices: 1046776--1046828 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1046766 GTTGACTTAG
1046776 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1046802 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1046828 G
1 G
1046829 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1047711 original size:26 final size:26
Alignment explanation
Indices: 1047674--1047726 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1047664 GTTGACTTAG
* *
1047674 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1047700 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1047726 G
1 G
1047727 ATCAGACGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1048526 original size:26 final size:26
Alignment explanation
Indices: 1048487--1048536 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1048477 GTTGACTTAG
1048487 GCATACGGAATTCATTCCCAGTCTGA
1 GCATACGGAATTCATTCCCAGTCTGA
* *
1048513 GCATACGGAGTTCATTCCTAGTCT
1 GCATACGGAATTCATTCCCAGTCT
1048537 AAGATCGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTGA
Found at i:1049396 original size:26 final size:26
Alignment explanation
Indices: 1049367--1049416 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1049357 GATTTAGGCA
*
1049367 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCACTCCCAGTCTAAGCT
1049393 TACGGAGTTCACTCCCAGTCTAAG
1 TACGGAGTTCACTCCCAGTCTAAG
1049417 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCACTCCCAGTCTAAGCT
Found at i:1050479 original size:26 final size:26
Alignment explanation
Indices: 1050440--1050492 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1050430 GTTGACTTAG
1050440 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
* *
1050466 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
1050492 G
1 G
1050493 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:1052654 original size:26 final size:26
Alignment explanation
Indices: 1052617--1052669 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1052607 GTTGACTTAG
1052617 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1052643 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1052669 G
1 G
1052670 ATCAGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1053530 original size:26 final size:26
Alignment explanation
Indices: 1053501--1053553 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1053491 GTTGACTTAG
*
1053501 GCATATGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
1053527 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
1053553 G
1 G
1053554 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:1055156 original size:26 final size:26
Alignment explanation
Indices: 1055120--1055172 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1055110 GTTGACTTAG
1055120 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1055146 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1055172 G
1 G
1055173 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1055862 original size:57 final size:57
Alignment explanation
Indices: 1055769--1055882 Score: 174
Period size: 57 Copynumber: 2.0 Consensus size: 57
1055759 AACCCACCTA
* *
1055769 CCACTCTATCGATCCACGGCTTGCGCAACCCGTCTCTCTGGCCGACGTAGTGCCCGC
1 CCACCCTATCGATCCACGGCTTACGCAACCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * * *
1055826 CCACCCTATCGATCCACGGCTTACGCATCTCGTCTCTTTGGTCGACGTAGTGCCCGC
1 CCACCCTATCGATCCACGGCTTACGCAACCCGTCTCTCTGGCCGACGTAGTGCCCGC
1055883 ACGCCCGCCC
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.14, C:0.40, G:0.22, T:0.24
Consensus pattern (57 bp):
CCACCCTATCGATCCACGGCTTACGCAACCCGTCTCTCTGGCCGACGTAGTGCCCGC
Found at i:1056110 original size:26 final size:26
Alignment explanation
Indices: 1056080--1056132 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1056070 GTTGACTTAG
1056080 GCATACAGAGTTCATTCCCAGACTAA
1 GCATACAGAGTTCATTCCCAGACTAA
* * *
1056106 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGACTAA
1056132 G
1 G
1056133 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGACTAA
Found at i:1057916 original size:26 final size:26
Alignment explanation
Indices: 1057880--1057930 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1057870 TTGACTTAGG
1057880 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
**
1057906 CATACGGAGTTCATTCTTAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
1057931 GATCAGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:1058806 original size:26 final size:26
Alignment explanation
Indices: 1058770--1058822 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1058760 GTTGACTTAG
1058770 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1058796 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1058822 G
1 G
1058823 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1060400 original size:12 final size:12
Alignment explanation
Indices: 1060383--1060408 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1060373 GCCGGCGTAG
1060383 TGCCCGCCCGCT
1 TGCCCGCCCGCT
1060395 TGCCCGCCCGCT
1 TGCCCGCCCGCT
1060407 TG
1 TG
1060409 TTTCGTCGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.54, G:0.27, T:0.19
Consensus pattern (12 bp):
TGCCCGCCCGCT
Found at i:1060622 original size:26 final size:26
Alignment explanation
Indices: 1060586--1060638 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1060576 GTTGACTTAG
1060586 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1060612 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1060638 G
1 G
1060639 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1061524 original size:26 final size:26
Alignment explanation
Indices: 1061488--1061540 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1061478 GTTGACTTAG
1061488 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1061514 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1061540 G
1 G
1061541 ATCAGACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1062205 original size:12 final size:12
Alignment explanation
Indices: 1062188--1062213 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1062178 GCCGGCGTAG
1062188 TGCCCGCCCGCT
1 TGCCCGCCCGCT
1062200 TGCCCGCCCGCT
1 TGCCCGCCCGCT
1062212 TG
1 TG
1062214 TTTCGTCGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.54, G:0.27, T:0.19
Consensus pattern (12 bp):
TGCCCGCCCGCT
Found at i:1063297 original size:26 final size:26
Alignment explanation
Indices: 1063261--1063313 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1063251 GTTGACTTAG
1063261 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1063287 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1063313 G
1 G
1063314 ATCAGACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1064070 original size:26 final size:26
Alignment explanation
Indices: 1064040--1064091 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1064030 GTTGACTTAG
1064040 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1064066 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1064092 TATCGGACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1064952 original size:26 final size:26
Alignment explanation
Indices: 1064922--1064974 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1064912 GTTGACTTAG
* *
1064922 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
1064948 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
1064974 G
1 G
1064975 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:1067602 original size:26 final size:26
Alignment explanation
Indices: 1067566--1067618 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1067556 GTTGACTTAC
*
1067566 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1067592 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1067618 G
1 G
1067619 ATTGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1068986 original size:878 final size:875
Alignment explanation
Indices: 1064066--1080619 Score: 14857
Period size: 892 Copynumber: 18.5 Consensus size: 875
1064056 CCCAGTCTAA
* * * * *
1064066 GCATACGGAGTTCATTCCCAGTCTAATATCGGACCAG-ACAGAGGGTTGCAGCAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAAC-GAGGGTTGCGGCAGCACATGCTGG
* * *
1064130 GCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCAT--T----G--T---CGGAG
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAG
* * * * * *
1064184 AACCTGACTGACGGCATTGGGGTTTCGATGAT--------C-AGGGGTGTGCGGACATGATGTGC
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * *
1064240 GATGGGTGCTGGTATTTGGCCCTTATATTGGCTCCCTATCACTCATCAAACCTTGAGAACTCGCA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
1064305 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
1064370 GGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCAAGTTTTTAGCTGAATTTTTTTCT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
1064435 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * *
1064500 TTTTAAAAAATCTCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
1064565 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
1064630 TGGCACGCAAAAATATGAAGATGTGCCTAAACCAACCTGCCACCCTATCGATCCACGGCTTGCAC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
1064695 ATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCTGGCCGCCCACCCGTTCGTTTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-CGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * * *** *
1064760 TAGGCATACGAAGTTAATTTCTAGTTTAAGATCGGACCGGACAGAGGGTTGCAATAACAGGATCG
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCG
* * * * * * *
1064825 ACAGCACGTAGAGGGGGACTCGA-CTGATCCTCGGC-TGACGCATCCCACCCTTCTGGCCGGTTG
779 GCAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTG-CGCATCCCGCCCCTCTGGCCGGCTG
* ** *
1064888 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAG
842 AGCACCCGCACGCTCGTTTTGTGGGATGACTTAG
1064922 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAATTCATTCCCAGTCTAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CAG-----------A--C------CGGA----A-
* * * * * ***
1064987 CGAGGGTTACGGTAGCACATGCTAGGG-TCGAGCATGTGCTGGTGCCACATTTTTCTTCGTTAGG
40 CGAGGGTTGCGGCAGCACATGCT-GGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGG
* * * * *
1065051 GCACTATCGTAGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCAACGATCGGGGGG
104 GCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGG
* *
1065116 GCCGGGGAGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCT
168 GCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * * *
1065181 ATCCCTCACCAAACCTTGAGAACTCGCACCCCCTTAAAGACCATTTGAGATTTTATAGGTTTGCT
232 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
1065246 TCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
297 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
1065311 CTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA-AGAGGATCACGTCTAACAA
362 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA-AGGATCACGTCTACCAA
* * *
1065375 GTTTGGGGCCAAAACTCCTT-CGAAAAAAATTTTAAAAAATCCCAAACCGCAGAAAGTTTCAAAA
426 GTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
*
1065439 ATCATGAAAAATA-AGAAACGAGTCGTCTTGCGATGAAACTTCACGTGAAGGCTTAAGGGACCAT
490 ATCATGAAAAATAGA-AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* *
1065503 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATTAAGATGTGCCTAAATCC
554 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* *
1065568 ACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCG--C-
619 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * * * *
1065630 CTG--C-CCC-ATCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAACAG
684 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * *
1065691 ACCGGACCGAGGGTTGTGGCAGCTGGATTGGCAGCACGTAGAAGGGGACCCGACCGATCCCTGG-
749 ACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGC
* ** * * *
1065755 TTGCACATCTTGCCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAG
814 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTTGTGGGATGACTTAG
* * * * * * *
1065817 GCATACGGGGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1065882 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
1065947 ACCTAACCGACGGCATTGGGGTTCAGACGATCGAGGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
1066012 TTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGACAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
1066077 TCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
1066142 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCGCTGAATCTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
1066207 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGGCCAAAACTCCTTCCGAAAAAA
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCCAAAACTCCTTCCGAAAAAA
* *** * *
1066272 TTTTAAAAAATCCCGAACCATAAAAAGTTTTTGAAATCGTGAAAAATAGAAAACAAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
1066337 CCATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
***
1066402 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** ** * * * *
1066467 ATCCCGTCTCTCTGGTTGGCGTAGCACCTG--C-CCGCCCGCCCGCTCATTTCATCGG-TCGCTT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * *
1066528 AGGCGTACGGAGTTCATTCCCAGTCTAAGATCAGGCCAGACCGAGGGTTGCAGCAGTAGGATTGA
715 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
* * ** *
1066593 CAGCATGCAGAGGGGGACCTGGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
780 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * * *
1066658 GCTCGTACGCTCGCTTCGTGGGTTGACTTAG
845 ACCCGCACGCTCGTTTTGTGGGATGACTTAG
* * * * * * *
1066689 GCATACGGAGTCCTTTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGCGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1066754 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGA
*** * *
1066819 ACCTGACCAATGGCATTGGGGTTTCGACGATCGGGGGGGCCGGGGGGTGTGCTCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* **
1066884 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCAAGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
1066949 CCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTCAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
1067014 GGGACACATTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *** * * *
1067079 GCAAGCGAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGAATAAAAATTCTTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
1067144 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
1067209 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
1067274 TGGCATGCAGAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * * ** * *
1067339 ATCCTATCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCTTGCCCGTTTGTTTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* ** * *
1067404 TAGGCATACGGAGTTCATTCCCTGTCTAAGATC-GAATTGAACCGAGGGTTGCGGCAGCAGGATT
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATC
* * * ** * ** * * *
1067468 GGTAGCACGCAGAGAGGCACCCGGGCAATCCCTAGCTTGCACATCTCGCCCCTCTGGCCAGCTGA
778 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
1067533 GCGCCCGCACGCTCGTTTCTTGAGTTGACTTACGCATACGGAGTTCATTCGCAG
843 GCACCCGCACGCTCG-TT-TT--G-TG------GGAT---GA---C-TT---AG
** * * * *
1067587 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCAGCAGCTCATG
1 -----GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTGCGGCAGCACATG
* *
1067652 CTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTC--AG-AT----
61 CTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACC
* * * * *
1067710 ----AACCTGATCGACGGCATTGGGGTACC-AGTGATCGGGGGGGCTGGGGGGTGTGCGCACATG
126 GGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGTGTGCGCACATG
* *
1067770 ATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAA
189 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
1067835 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGTCAGTAGCAATTAAAGTGTCT
254 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
1067900 GAAATGGGGCCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
319 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
1067965 TTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTGCCAAGTTTAGGGCCAAAACTCCTTCCA
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
1068030 AAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTC
449 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * * *
1068095 GTCTTGGCATGAAACTTCACGTGTAGGCTTAAGGGACCAATGTTTGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
1068160 TGGCATTGGCATTCAGAAATATGAAGATGTGCCTAAAACCACCTACCACGCTATCGATCCACGGC
579 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
*
1068225 TTGCGCAT-CCGTCTCTCTGGCCGGCATAGTGCCCGCCCGACCGCCCGCCCGCTCGTTTCGTCGG
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGG
* * * * * *
1068289 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGA-CTATTGGTTACGGTAGC
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA-GGGTTGCGGCAGC
*** * * ** *
1068353 AGGATCAATAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGTGCCTTTGGCC
772 AGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
1068418 GGTTGAGCACCCACACGCTCGTTTTGTGGGATGTCTGAG
837 GGCTGAGCACCCGCACGCTCGTTTTGTGGGATGACTTAG
* * * *
1068457 GCATACAGAGTTCATTCCCAATCTAAGATCAAACCGGAACGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
1068522 CTAGGGCATGTGTTGGTGCCACATTTTTCTTCACCGAGGCACCATCGTTGGAGCATCATCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * *
1068587 ACCTGACCGACGGCATTGGGGTTCCTACGATCGAGGGGGTCGAGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCG-GGGGGTGTGCGCACATGATGTG
*
1068652 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1068717 ACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
1068782 GGGGACACTTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 GGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * *
1068847 TTGCATGCCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
1068912 AATTTTAAAAAGTCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAGTAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * * **
1068977 TGCCATGAAACTTCATGAGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATATC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
1069042 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
1069107 GCATCCCGTCTCTCTGGCTGGCATAG-GCCCGCCCATCCGCCTGCCCGCTCGTTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * ** *
1069171 CTTAGACATACGGAGTTCATTCCTAGTCTAAGATCAGACCGAACTGAGGGTTGCGGTTGCAGTAT
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * ** *
1069236 CGGTAGCATGCAAAAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCACTCTGGCCGGCTG
777 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
1069301 AGAACCCGCACGCTCATTTCGTGGGTTGACTTAG
842 AGCACCCGCACGCTCGTTTTGTGGGATGACTTAG
* *
1069335 GCATACGGAGTTCTTTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG---AT-CAG---A----C---C---G---GAA-C-GA-
* ***
1069400 CGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCATTGGGG
43 -G--GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGG
** *
1069465 CACCA---TC---GC-T----GGAGAACCTGACCGGTAGCATTAGGGTTTCC-ACGATCGGGGGG
105 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATT-GGGGTTCCGACGATC-GGGGG
* * *
1069518 GCCGGGGGGTGTGCGCAAATGATGTGCAATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTA
168 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
1069583 TCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
233 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
1069647 CCAGTAACCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
1069712 TTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
*
1069777 TTGGGGCCAAAACTCCTTTCC-AAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
428 TTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * * *
1069841 CGTGAAAAATAGAAAACGAGTTGTCTTGTCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGT
492 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
1069906 ATGAATTTACAAGCCATAAAAATGACTTTGGCATGCAGAAATATGAAGATGTGCCTAAACTCACC
557 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* *
1069971 TACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT-----------G
622 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCG
* * *
1070025 CCCGCCCACTCGTTTCCTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACC
687 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
** ** * ** *
1070090 AAATTGAGGGTT-----A-C--G-T---CAACATACAGAGGGGGACCCGGTCGATCCCCGGCTTG
752 GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTG
* *
1070143 CGCATCCCGCCCCTCCCGGCCGGCTTAGCACCCGCACGCTCGTTTCCTGGGTTGACTTAGGCATA
817 CGCATCCCGCCCCT-CTGGCCGGCTGAGCACCCGCACGCTCGTTT--T--G-TG-----GG-AT-
*
1070208 CGGAGTTCATTCCCAATCTAA
869 ----G---A----C--T-TAG
* * *
1070229 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
1070294 CT-TGACATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGA
* * * *
1070358 ACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGTGGCCAGGGGGGGTGTACGCACATGATTTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTG
* *
1070423 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1070488 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
**
1070553 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTATAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
1070618 TGCATGCCAACAAAAATACATGGATCACCTCTGCCACA-TTTGGGGACAAAACTCCTTCCGAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
1070682 AATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
1070747 TGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
1070812 ATTTGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGT
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
1070877 GCATTCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * *
1070942 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGAGCAGACCGAGGGTTGCGACAGCAGGAT
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * * * * *
1071007 CGGCAGCACGCAGAGGGGGACCTGGTTGATCCCTGGCTTGCGTATCCCACCCCTCTAGCCGGCTG
777 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
1071072 AGCACCCGTACGCTCGTTTCGTGGGTTGACTTAG
842 AGCACCCGCACGCTCGTTTTGTGGGATGACTTAG
* * **
1071106 GCATAGGGAGTTCATTCCCAGTCTAAGATCGGACTAG-ACTGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAAC-GAGGGTTGCGGCAGCACATGCTGG
* * * * **
1071170 GCTCGGGCATGTGTTGGTGCCACATTTTTCTTCACTGGGGCACCATCGTCGGAACATCGTCGGAG
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAG
*
1071235 AACCTGACTGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGCGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGG-GTGTGCGCACATGATGT
* * *
1071300 GCGATGGGTGCTGGTACTGGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1071365 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1071430 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
1071495 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * **
1071559 AATTTTAAAAAATCTTGAACCGTAAAATGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
1071624 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
1071689 ATTTGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * **
1071754 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCCTGCTCATTTCGTCATTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * ** * *
1071819 CTTAGGCATACGAAGTTCATTCCAAGTCTAAGATCAGATCGGACCGAGGGTTATGGTACCAGGAT
712 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGAT
* * * **
1071884 TGGCAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCAACCCTCTGGCCGGCTT
777 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC-T
** * * *
1071949 GAGTGCCCGCAAGCTCATTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAG
841 GAGCACCCGCACGCTCGTTT--T--G------T-GGGAT---GA---C-TT---AG
* *
1072005 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG-ACTGAGGGTTGTGGTAGCACAT
1 -----GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAAC-GAGGGTTGCGGCAGCACAT
* * * * * * **
1072069 GGTGGGGTCAGGCATGTGCTGGTGCCGCATTTTTCTACGCCGAGGCACCATCACCGGAGCATCAC
60 GCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCAC
* * * * * *
1072134 CGGAGAACCTGACCGACGACATTGGGGTTTCGGCAAT-GGGGGGTCGGGGGGTGGTGTGCGCACA
125 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-C-CGGGG-GGTGTGCGCACA
*
1072198 TGATGTGTGATGGGTGCTGGTAC-TGTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
187 TGATGTGCGATGGGTGCTGGTACTTG-GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
1072262 GAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTG
251 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
1072327 TGTTAACTAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
316 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
1072392 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTATACCAAGTTTGGGCCCAAAAC-CTCT
381 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-CT
* * * * *
1072456 TTCGAAAAAATTTTGAAAAATCCCGAACCGCAAAAAGTTT-AGAAAATCGTGAAAAATAAAAAAC
445 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA-AAAATCATGAAAAATAGAAAAC
*
1072520 GAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
509 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
1072585 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATTGATCC
574 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * *
1072650 ACGACTTACGCATCCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC-CGC-CCCACTCGTTTC
639 ACGGCTTGCGCATCCC-GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTC
* * ** *
1072713 GTCAGTTGGCTTAGGCATACAGAGTTCATTCTTAGTCTAAGATCAGACCAGACCGAGGGTTGCGG
703 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
* * * * *
1072778 CAGTAGGATCGGCAGCATGCAGAGAGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTTT
768 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * *
1072843 GGCCGGTTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAG
833 GGCCGGCTGAGCACCCGCACGCTCGTTTTGTGGGATGACTTAG
* ** ** * * *
1072886 GCATACAGAGTTCATTCTTAGTCTAAGATCAGATTGGACCGTGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
1072951 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGC-CTCATCGCCTGAGAATCGCCAGAG
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCAC-CATCGTCGGAGCATCACCGGAG
* * * * *
1073015 AACTTGACCGACGGCATTGGGGTTCCGATGATCAGGGGGGTCGAGAGGGGGTGTGTGCACATGAT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG-C-CG-GGGGGTGTGCGCACATGAT
*
1073080 GTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
1073145 CACA--CCCTTAAAGAGTATTTGAGATTTTGCAGGTTTGCTGCCAATAGCCATTAAAGCGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
** *
1073208 AATGGGGATGC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
1073272 TTGTGCATGCCAACAAAAATTCAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCTGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** * * *
1073337 AAAATTTTAAAAAATCTTGAACCGTAAAATGTTTCAAAAATGATGAAAAATAGAAAACGAGTCAT
451 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
1073402 CTTGCCCTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * * *
1073467 GCATTGGCAAGTAGAAATTTGAAGATGCGCCTAAACCCACCTATCACCCTATCGATCTACGACTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
1073532 GCGCATCCCATCTCTCTGGCCGACGTAGT------AC-CCGCCCGTCCGCTCGTTTCGTCGGTTG
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * *
1073590 GCTTAGGCATACGGAGTTCATTCCCAGTATAAGATCAAACCAGATCGAGGGTTGTGGCAGCAGGA
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGA
* * * * * ***** **
1073655 T-TGCTAGCACGCAGAGGGGGACCCAACCGATCCCTGGCTTGCGCAT-CCGGCCC-CAAAAAGTT
776 TCGGC-AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
** *** * * ** * *
1073717 TCGAAAATCCAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
840 T-GAGCA-CC--CGCACG-CTCGTTTTG---TGGGA--TGAC-T-TAG
* * * * * * * * * * *
1073765 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACACAGAAATATGAAG
1 GCAT-ACGG---A--GT-T-CA-TTCCCAGTC-T---AA--G-A-T--CAGACCG-GA-ACGAGG
* *** * * * **** ** * * * * * *
1073830 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACG-GCTT-GTGCATCCCGTCTCTC-TGGCC
45 GT-TG-CGGCA-GCACATGCTGGGC--TCG-GGCATGTG-TTGGTGC--CGCATTTTTCTTCGCC
* * * * ** * ***** * *** *
1073892 GGTGTACTGC-CCGCCCGCCCGC-CCACCTGCTCTTTTCGTCGTTTGGCTTAGGCATACGGAGTT
101 GGGGCAC--CATCG-TCG-GAGCATCACC-G--GAGAACCT-GACCGGC---GGCAT-TGG-G--
* * *** * * * * * *
1073955 TATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGTGGTAGCACATGCTGGGGTCAGGCATGTG
151 -GTT-CC-G---ACGATC--GGGGGGCCGGGGGGTGT-G-CGCACATGAT-GTG-C--G-ATG-G
* ** *** ** * * * * * * * * *
1074020 GTGGTGCCACATT-TTTCTT-CGTCGAGGCACC-ATCACTGGA-GAATCGTCGGAGAACCTAACC
200 GTGCTGGTAC-TTGGCCCTTATATTG-GCCCCCTATCCCT-CATCAAACCTC-GAGAA-CTCA-C
** * *** * * * ***** ** *
1074081 GACGGCATTGGGGTTTCGGCGATTGGGGGGGCCGAGGGGTGGTGTGC-GCACATGATGTGTGGTG
259 -ACCCCCTTAAAG----AGC-ATT-TGAGATTTTACAGGT--T-TGCTGC-C---A------GTA
** ** * * * * ** * * ****
1074145 GGTATTGGTACTGTGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACACCCC
304 GCCA-T--TAAAGTG-TCTGAAATGGGGACACT-T--TT-TTCAAA--T-G-G---TCACAAAAT
** * * * ** ** * ** * *
1074210 CTTAAAGAGCCTTTGAGATTTTA-C--AGGTTTGCTG-CCAGTAGCC-ATTAAAGTGTCTGAAAT
354 CTTGTACA--CTTCGAGTTTTTAGCTGAATTTTTTTGTGCA-T-GCCAACAAAAAT-AC---AA-
* * ** * * **
1074270 GGGGA-CACTTTTTTCAA--AT-GGTCACAAAATCTTGTACACTT-CGAGTTTTAGCTGAATTTT
410 --GGATCACGTCTACCAAGTTTGGGGC-CAAAA-C---T-C-CTTCCGA-----A----AA--AA
** * * * * *
1074330 TTTGTGCACGCCAAAAAAATACAAGGATCACGTATACAAATTTTGGGGTCAAAACTCCTTCCAAA
455 TTT-T--------AAAAAAT-C-CCGAAC-CGTA-A-AAA-GTT----TCAAAAAT-CAT---GA
* * * * * * *** *
1074395 AAAATTTTGAAAA--A-TCCCGAAC--CCCA-AAAAGTTTCAAAAATCATGAAAAATAGAAAACG
497 AAAA--TAGAAAACGAGT--CG-TCTTGCCATGAAA-CTTC----A-CGTGAAGGCT---TAA-G
* * * * * * * ***
1074454 AGTCGTC-TTGCCATGAAACTT-C--G-CAT--GAA-GGC-TTAAGGGA-CCA-TTGTATGAATT
547 GGAC--CATTG-TATG-AATTTACAAGCCATAAAAATGGCATT--GGCATGCAGAAATATGAA--
* *** ** * *** ** * * * *
1074508 TACAAGCCATAAAAATGGCA-TTGGCACGCAGAAATAT-GA-AGATGTGTTTAAACCCACCTACC
604 GATGTGCC-T--AAA-CCCACCT---AC-CA-CCCTATCGATCCACG-GCTT--GCGCA--T-CC
* * * * * ** * ** * * * * * **
1074570 AC-CCTATC-GATCCCGGCTTA-CG-CATCCCGTCTCTCTGGCCGGCGTAGTGCTCGCCTGTCCG
654 -CGTCTCTCTG--GCCGGCGTAGTGCCCGCCCG-C-CGCCCGCCCGC-TCGT-TTCGTCGGTTGG
** * * ** * ** * * ** * * * * * *
1074631 CCCA--CCTGCTCATTTCATCGGTTGGCTTAGGCATAGAAGTTCATTCCAG-TCTAAGATCAGAC
712 CTTAGGCATACGGAGTTCA----TT--CCCAGTC-T--AAGATCAGACCGGACCGAGGGT-TG--
* * * * * * * ** * *
1074693 CGG-ACCGAGGGT-TGCAGCA-GTAGTATCGGCAGCACACAGAAGGGGA-CCTGGCCGATCCCTG
765 CGGCAGC-AGGATCGGCAGCACGCAG-A--GG-GGGAC-CCG-A-TCGATCC---CCG--GCTTG
* ** * * * *
1074754 -GCTTACGCAACCCACTCCTCTGGCTGGCTGAGCACCCGCACACTCGTTTTATGGGTTGACTTAG
817 CGCAT-C-CCGCCC----CTCTGGCCGGCTGAGCACCCGCACGCTCGTTTTGTGGGATGACTTAG
*
1074818 GCATACGGAGTTCATTCCCAGTCTAAGTAGATGGAGTTCATTCCCAATCTAAGATCGGATTGGAC
1 GCATACGGAGTTCATTCCCAGTC----T--A---AG----------ATC--AGACCGGA----A-
* * * *
1074883 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGAGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGG
** * * *
1074948 CACCATCGTCGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCACGGGGG
105 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
1075013 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
169 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
1075078 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
234 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
1075143 TAGTAGCCAATAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
299 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
1075208 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAGGTCTACCATGTT
364 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
1075273 TGGGGCCAAAACTCCTTCCAAAAAAAGTTTAAAAAATCTCGAGCCGCAAAAAGTTTCAAAAATCA
429 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* * *
1075338 TGAAAAATAAAAAACGAGTCGTCTTGCCCATGAAACTTCACGTGAAGGCTTAAGGAACCACTGTA
494 TGAAAAATAGAAAACGAGTCGTCTTG-CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
1075403 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCACCT
558 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
1075468 ACCACCCTATCGATCCACAGCTTACGCATCCCGTCTCTCTGGCCAGCGTAGT-----------GC
623 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGC
** * ** * * * *
1075522 CCGCCCGCTTATTCCGTCAATTGGCTTAGGCATACGAAGTCCATTCCCAGACTAAGATCAGACTG
688 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * * *
1075587 GACCGAGGGTTACGGCAACAGGATTGGCAGCACACAGAAGGGGACCCGACCGATCCCCGACTTGC
753 GACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGC
* * * ** *
1075652 GCATCCCACCCCTCTGGCCGACTGAGCACCCGCACGTTCGTTTCATGGGTTGACTTAG
818 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTTGTGGGATGACTTAG
*
1075710 GCATACGGAGTTCATTCCCAGTCTAAACAGACGGAGTTCATTCCCAGTCTAAATAGACGGAGACC
1 GCATACGGAGTTCATTCCCAGTCT------A---AG---A-T--CAG-------A-CCGGA-A-C
* * * * * *
1075775 GAGGGTTGCGGTAGCACTTGCTGGGCTCAGGCATGTGTTGGTGTCGCATTTTTCTTTGTCGGGGC
41 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGC
* * *
1075840 ACCATCGCCGGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGAGGGCC
106 ACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCC
* **
1075905 GGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCTGTAT
171 -GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
1075970 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGGTAC
234 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
1076035 CAGTAGCCATTAAAATGT-TGGTAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAA
299 CAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
1076099 TTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGT
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** * ** **
1076164 TTGGGGTGAAAA-TGCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAAT
428 TTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* *
1076228 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTTT
492 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
1076293 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACC
557 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
1076358 GACCACCCTATCGATACACGACTTTCGCATCCCGTCTCTCTGGCCGGAGTAGT------------
622 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCG
* * * *
1076411 CCCGCCCGCTCGTTTCATCGGTTTGCCTAGGCATACGGAGTTCATTCCCAGCCTAAGATC-GAAC
687 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-AC
* * * * * * * * * *
1076475 CAGAGCGAGGGCTGTGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGTTGATACTCGGTTT
751 CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTT
* * * *
1076540 GCGCATCCCTCCCCTCTGGCCGGCTGAGCACCCGCATGCTCGTTTCGTGGGTTGACTTAG
816 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTTGTGGGATGACTTAG
* * *
1076600 GTATACGGAGTTCATTCCCAATATAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A---CC-G-----GA----A-C-GA-
* * * * * *
1076665 CGAAGATTGCAGAAGCACATGCTAGGCTCTGGCATGTGTTGGTGCCGCATTTTTCTTTGCCGGGG
43 -G--GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGG
* * * *
1076730 CACCATCG-CTGGAGCATCGCTGGGGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGG
105 CACCATCGTC-GGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGG
*
1076794 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTA
168 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
1076859 TCCCTCATCAAACCTCGATAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
233 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
1076924 CCAGTAGCCAATATAA-TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
298 CCAGTAGCCATTA-AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
1076988 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAATAAAATTACAAGGATCAAGTCTACCAAG
362 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
1077053 TTTGGGGCCAAAACTGCTTCTGAAAAAATTTAAAAAAATCCCGAA-CTTCAGAAAGTTTCAAAAA
427 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAA
* * *
1077117 TAATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATG
491 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
1077182 TATGAATTTACAAGCCATAATAATGGCATTGGCACGGAGAAATATGAAGATGTGCCTAAACCCAC
556 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* *
1077247 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCACTCTGGCCGACGTAGTGCCCGCCTTC-
621 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC--CG
* * *
1077311 CCGCTCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCCA
684 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-CA
* * * * * * *
1077376 -ACCAGACCGAGGGATGTGGCAGCAGGATCGGCAGCATGCAGAGAGGGACCCGGTCGATCCTCGG
748 GACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGG
* * * * * * *
1077440 CTTGTGTATCCCGCCCCTCTGGCCGCCAGAGCATCCACACGCTTGTTTCGTGGGTTGACTTAGGC
813 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT--T--G-TG-----GG-
1077505 ATATGGAGTTCATTTCCAG
867 --AT-GA---C--TT--AG
* * * **
1077524 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CGGAACCGATGGTTACAACAGCACAT
1 -----GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAA-CGAGGGTTGCGGCAGCACAT
* * * * *
1077588 GCTGGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTTGTCGGGGCACCATTCGCCCCGG-GCAT
60 GCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCA-TCG--TCGGAGCAT
* * * * *
1077652 CACCGTAGAACCTGACCGGCGGCATTAGGGTTCTGGCGAT--------CGGGGGGTGTGCGCATA
122 CACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACA
*
1077709 TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
187 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
1077774 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGT
252 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
1077839 CTTAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
317 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * ** *
1077904 TTTTTTTTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTAAGGCTAAAACTCCTTC
382 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * *
1077969 CGAAAAAATTTTAAAAAACCCCGAACCGTGAAAAGTTTCAAAAATCGTGAAAAGTAGAAAACGAG
447 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
1078034 TCGTCTTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
512 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *** *
1078099 ACTGGTATTGGCACATAGAAATATGAGGATGTGCCTAAACCCACCTACCA-CCTATCGATCCACG
577 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * * *
1078163 GCTTGCGCATCACGTCTCTTTGGCCGGCGTAGTACCCGCTC-ACG-CCGCTCGTTAGTTTC-TCG
642 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCG
* * * *
1078225 GTTTTTGGGCTTAGGCATACAGAGTT-ATTCCCAGTCTAAGCATCAGACACAG-CC-AGGATCGC
707 G---TT-GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGAC-CGGACCGAGGGTTGC
* ** * *
1078287 -GCTGCAGGATCGATAGCACGCA-A-GGGGACTCGA-CGAT--CCGGCTTGCGCAT-CC-CACCT
766 GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * *
1078344 CTGGCCGGCTGAGCA-TCGCAAGCTCGCTGTCGGGTTGCTAGGCATGGAGTTCA-
831 CTGGCCGGCTGAGCACCCGCACGCTCG-T-T----TTG-T-GGGAT-GACTT-AG
* * * * * * * *
1078397 CCATCTCGTCGAGTTTATT-CCAGT-T-AGAATCGGACTGGACCGA-GGTTACGACAGCACATGC
1 GCAT-ACG--GAGTTCATTCCCAGTCTAAG-ATCAGACCGGAACGAGGGTTGCGGCAGCACATGC
* * * * * **
1078458 T-GGCTCGAGCATGTGTTGGTGCTGCA-TTTTCTTTG-CGGGCCACCACCGTC--AGCATCGTCG
62 TGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCG
* * * * * * *
1078518 AAGAACC-GATC-G-TGCATTGGGGTCCCGA-TATCGGAGGGCC--GGGGTGTGCGCACATAATG
127 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATG
1078577 TGCGAT-GGTGTCT-GTACTTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
192 TGCGATGGGTG-CTGGTAC-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
1078640 TCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAATAGCCATTAAAATG-CAT
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-T
* * * * *
1078703 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACATTTCGAGTTTCTAACTGAATTT
319 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
1078768 TTTTGTGCATGCCAACAAAAGTACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCA
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* **
1078833 AAAAAATTTTAAAAAATCCCAAACCGCGAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
449 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * *
1078898 GTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACTAGCCGTAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
1078963 TGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
579 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * * ** *
1079028 TTACGCATCACGTCTTTTTGGCCGGCGTAATACCCGCCTGCTTGCCCATCCGCTCGTTTCATCGG
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-CGCCCGCCCGCTCGTTTCGTCGG
* * * * * **
1079093 TTGGCTTAGGCATACGGGGTTCATTCCCAGTCTAAGATCGGACCGGATCGAAGGTTGTGGCAATA
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
* * * ** * *
1079158 GGATCGGCACCACGTATAGGGGGACCCGATCGATCCTTGGCTTGCACATCCCGCTCCTCTGGCCG
773 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * **
1079223 GCTGAGCACCCACACACTCGTTTCGTGGCTTGACTTAG
838 GCTGAGCACCCGCACGCTCGTTTTGTGGGATGACTTAG
1079261 GCATACGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCAAGTCTAAGATCAGACTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A--CC--G-----G---A-AC--GA-
* *
1079326 CGACGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTAGTGCCACATTTTTCTTCGCCGGGG
43 -G--GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGG
* * **
1079391 CACCA---TC---GC--CA---GAGAACCTGACCGGTGGCATTAGGGTTCCGGTGATCGGGGGGC
105 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC
** * *
1079445 CGGGGGGGTGTGCGTGCATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTAT
170 C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
1079510 CCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
234 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
1079575 CAGTAGCCATTAAAGTGTCT-AAACTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
299 CAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
1079639 TTCGAGTTTTTAGCTGAATTGTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACTAAG
363 TTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * **
1079703 TTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCAG-AAAAAGTTTTGAAAA
427 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC-GTAAAAAGTTTCAAAAA
*
1079767 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
491 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
** *
1079832 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGGCTAAACCCAC
556 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
1079897 CTACCACCCTATCGATACACGACTTACGCATCCCGTCTCTCTGGCCGGCGTAAT----G---GCC
621 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * *
1079955 GCCCACCCGCTCGTTTCGTCGGTTTGCTTAGCCATACGGAGTTCATTCCCAGTGTAAGATCAGAC
686 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * * * * *
1080020 CAGACCGAGGGTTATGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCAATCCCCGACTT
751 CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTT
* * * * ** * *
1080085 GCGCATCCTGCCCCTCTGGCTGACTGAGCACCCGCACGTTCGTTTCATGGGTTGACTTAC
816 GCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTTGTGGGATGACTTAG
* *
1080145 ACATACGGAGTTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTATGATTAGACCGAAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A---C----C--------G---GAA-
* *
1080210 CGAGGGTTGCGACGGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCA--TTT-TT--------
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGG
* * **
1080264 ---C-T--TC---G--T---CGGAGAACCTAACCGGCGGCATTGGAGTTCCGGTGATCGGGGGGG
105 CACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
* * * *
1080315 CTGCGAGGGTGTGCGCACAAGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
169 CCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
1080380 TCCCTCATCAAACCTCAAGAACTTACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTG
233 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
1080445 CCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
1080510 TTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATACAAGGATCACGTCTACCAACT
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
1080575 TTGGGGCC-AAACACCTTCCGAAAAAATTTAAAAAAATCCCGAACC
428 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACC
1080620 CAAAATTAAA
Statistics
Matches: 12979, Mismatches: 1920, Indels: 1584
0.79 0.12 0.10
Matches are distributed among these distances:
856 26 0.00
857 4 0.00
858 13 0.00
859 1 0.00
860 3 0.00
861 22 0.00
862 347 0.03
863 152 0.01
864 34 0.00
865 128 0.01
866 21 0.00
867 365 0.03
868 327 0.03
869 236 0.02
870 102 0.01
871 353 0.03
872 461 0.04
873 262 0.02
874 30 0.00
875 297 0.02
876 245 0.02
877 744 0.06
878 939 0.07
879 200 0.02
880 393 0.03
881 10 0.00
882 66 0.01
883 10 0.00
884 248 0.02
885 21 0.00
886 29 0.00
887 25 0.00
888 37 0.00
889 15 0.00
890 976 0.08
891 722 0.06
892 1428 0.11
893 110 0.01
894 65 0.01
895 157 0.01
896 522 0.04
897 12 0.00
898 19 0.00
899 8 0.00
900 10 0.00
901 8 0.00
902 30 0.00
903 473 0.04
904 953 0.07
905 251 0.02
906 47 0.00
907 22 0.00
908 20 0.00
909 5 0.00
910 1 0.00
911 6 0.00
912 5 0.00
913 4 0.00
915 12 0.00
916 5 0.00
917 17 0.00
918 1 0.00
920 3 0.00
921 2 0.00
922 4 0.00
923 6 0.00
924 4 0.00
925 15 0.00
926 5 0.00
927 2 0.00
928 9 0.00
929 31 0.00
930 17 0.00
931 20 0.00
932 9 0.00
933 4 0.00
934 8 0.00
935 7 0.00
936 9 0.00
937 4 0.00
938 7 0.00
939 5 0.00
940 2 0.00
941 12 0.00
942 16 0.00
943 8 0.00
944 9 0.00
945 6 0.00
946 6 0.00
947 7 0.00
948 4 0.00
949 2 0.00
950 7 0.00
954 5 0.00
955 4 0.00
956 1 0.00
957 7 0.00
958 11 0.00
959 1 0.00
960 8 0.00
962 2 0.00
963 5 0.00
965 1 0.00
966 1 0.00
967 1 0.00
968 3 0.00
969 14 0.00
970 15 0.00
971 3 0.00
972 13 0.00
973 8 0.00
974 1 0.00
975 8 0.00
976 3 0.00
977 1 0.00
978 3 0.00
979 6 0.00
980 3 0.00
981 1 0.00
982 3 0.00
983 7 0.00
984 1 0.00
985 8 0.00
986 14 0.00
987 3 0.00
988 14 0.00
989 15 0.00
990 3 0.00
991 1 0.00
992 1 0.00
993 1 0.00
995 5 0.00
996 2 0.00
998 8 0.00
999 11 0.00
1000 8 0.00
1001 4 0.00
1002 1 0.00
1003 6 0.00
1004 2 0.00
1008 7 0.00
1009 2 0.00
1011 4 0.00
1012 14 0.00
1013 4 0.00
1014 7 0.00
1015 6 0.00
1016 11 0.00
1017 12 0.00
1018 9 0.00
1019 1 0.00
1020 5 0.00
1021 14 0.00
1022 6 0.00
1023 10 0.00
1024 77 0.01
1025 64 0.00
1026 21 0.00
1027 30 0.00
1028 11 0.00
1029 17 0.00
1030 38 0.00
1031 28 0.00
1032 42 0.00
1033 33 0.00
1034 21 0.00
1035 19 0.00
1036 16 0.00
1037 19 0.00
1038 30 0.00
1039 22 0.00
1040 24 0.00
1041 27 0.00
1042 13 0.00
1043 16 0.00
1044 12 0.00
1045 6 0.00
1046 18 0.00
1047 24 0.00
1048 12 0.00
1049 20 0.00
1050 11 0.00
1051 13 0.00
1052 18 0.00
1053 28 0.00
1054 14 0.00
1055 18 0.00
1056 9 0.00
1057 15 0.00
1058 15 0.00
1059 5 0.00
1060 20 0.00
1061 4 0.00
1062 1 0.00
1063 40 0.00
1064 13 0.00
1065 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (875 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAACGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
CCCGCACGCTCGTTTTGTGGGATGACTTAG
Found at i:1069371 original size:26 final size:26
Alignment explanation
Indices: 1069335--1069387 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1069325 GTTGACTTAG
*
1069335 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1069361 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1069387 G
1 G
1069388 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1070239 original size:26 final size:26
Alignment explanation
Indices: 1070203--1070255 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1070193 GTTGACTTAG
1070203 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1070229 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1070255 G
1 G
1070256 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1072014 original size:26 final size:26
Alignment explanation
Indices: 1071984--1072036 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1071974 GTTAACTTAG
1071984 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1072010 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1072036 G
1 G
1072037 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1075744 original size:26 final size:26
Alignment explanation
Indices: 1075714--1075771 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
1075704 ACTTAGGCAT
1075714 ACGGAGTTCATTCCCAGTCTAAACAG
1 ACGGAGTTCATTCCCAGTCTAAACAG
*
1075740 ACGGAGTTCATTCCCAGTCTAAATAG
1 ACGGAGTTCATTCCCAGTCTAAACAG
1075766 ACGGAG
1 ACGGAG
1075772 ACCGAGGGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22
Consensus pattern (26 bp):
ACGGAGTTCATTCCCAGTCTAAACAG
Found at i:1077539 original size:26 final size:26
Alignment explanation
Indices: 1077503--1077555 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1077493 GTTGACTTAG
* *
1077503 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1077529 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1077555 G
1 G
1077556 ATCGGACGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1079299 original size:26 final size:26
Alignment explanation
Indices: 1079263--1079314 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1079253 TGACTTAGGC
*
1079263 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCAAGTCTAAGA
1079289 ATACGGAGTTCATTCCAAGTCTAAGA
1 ATACGGAGTTCATTCCAAGTCTAAGA
1079315 TCAGACTGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCAAGTCTAAGA
Found at i:1080182 original size:26 final size:26
Alignment explanation
Indices: 1080146--1080195 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1080136 TTGACTTACA
* *
1080146 CATACGGAGTTCTTTCCCAGTCTAAG
1 CATACGGAGTTCATTCCAAGTCTAAG
1080172 CATACGGAGTTCATTCCAAGTCTA
1 CATACGGAGTTCATTCCAAGTCTA
1080196 TGATTAGACC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
CATACGGAGTTCATTCCAAGTCTAAG
Found at i:1081853 original size:26 final size:26
Alignment explanation
Indices: 1081817--1081869 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1081807 GTTCACTTGG
* *
1081817 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
1081843 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
1081869 G
1 G
1081870 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:1082409 original size:903 final size:886
Alignment explanation
Indices: 1080643--1083341 Score: 3661
Period size: 903 Copynumber: 3.0 Consensus size: 886
1080633 GGAACCACAA
* *
1080643 AAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCGCATCCTGTCTT
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTT
* * ** * * * * *
1080708 TCTGGCCGGCGTAGTGCCCGCTTGCCCACTCATCCGCTCGTTTCGTCGGTTGGCTTAGGCATACA
66 TCTGGCTGACGTAGTGCCCGCCCGTCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * *
1080773 GAGTTCATTCGCAGTCTAAGATCGAACCTGACTGAGGGTTGCGGCAGCAAGATCGACAGCACGCA
131 GAGTTCATTCCCAGTCTAAGATCG-ACCAGACTGAGGGTTGCGG-AGCAGGATCGACAGCACGCA
* * * * *
1080838 GAGAGGGACCCGACCGAT-TCCAGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCATCCGCAC
194 GAGGGGGACCCGATCGATCCCCA-ACTTGCGCATCCCACCCCTCTGGCC-GCTGAGCACCCGCAC
* * *
1080902 GCTCATTTCGTGGGTTGACTTAGTCATATGGAATTCATTCCCAGTCCAAGCATACAGAGTTCATT
257 GCTCGTTTCGTGGGTT-ACTT-G-CATA-GG-ATTCATTCCTAGT-CAAGCATACGGAGTTCATT
* * *
1080967 CCCAGTCTAAGATCGGA-TCGGACCGAGTGTTATGACAGCACATGCTGGGCTCGAGCATGTGTTG
316 CCCAGTCTAAGATCGGACT-GGACCGAGGGTTACGACAGCACATGCT-GGCTCGGGCATGTGTTG
* * * *
1081031 GTGCCACATTTTTCTTCGCCGGGCCACCATCGC---C--G--GAGAACCTAACCGGCGGTATTGG
379 GTGCCGCATTTTTCTTCGCCGGGGCACCATCGCGAGCATGCCGAGAACCTGACCGGCGGCATTGG
** * * *
1081089 AGTTCCGATGATCGGAGGGGCCGCGGGGTGTG-AGCACATGATGTGCGATGGGTGCTGGTACTTG
444 -GTTCCGGCGATCGGGGGGGCGGGGGGGTGTGCA-CACATGATGTGCGATGGGTGCTGGTACTTG
1081153 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
507 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
1081218 GAGATTTTATAGCTTTGCTGCCAGTAGGCTTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
572 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
** * *
1081283 GGTCGTAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAGTAC
637 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* * **
1081348 AAGCATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAAC
702 AAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCC-AAAAAATTTTAAAAAATCCTGAAC
*
1081413 CGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
765 CATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
*
1081478 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGCACATAG
830 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
* * * *
1081535 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCATGACTTGCGCATCCCGTCTC
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTT
* *
1081600 TCTGGCTGACGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACG
66 TCTGGCTGACGTAGTGCCCGCCCGTCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * *
1081665 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGTAGTAGGATCGACAGCACGGA
131 GAGTTCATTCCCAGTCTAAGATC-GACCAGACTGAGGGTTGCGG-AGCAGGATCGACAGCACGCA
* * * *
1081730 GAGGGGGACCCGATCGATCCCCAACTTGCACATCTCACCCTTCTGGCTGACTGAGCACCCGCACG
194 GAGGGGGACCCGATCGATCCCCAACTTGCGCATCCCACCCCTCTGGCCG-CTGAGCACCCGCACG
*
1081795 CTCGTTTCGTGGGTTCACTTGGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTACATTC
258 CTCGTTTCGTGGGTT-ACTT--GCATA-GGA-TTCATTCCTAGTC-AAGCATACGGAGTTCATTC
** *
1081860 CCAGTCTAAGATCGGACTGGACCGAGGGTTACGGTAGCACATGCTAGACTCGGGCATGTGTTGGT
317 CCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCT-GGCTCGGGCATGTGTTGGT
*
1081925 GCCGCATTTTTCTTCACCGGGGCACCATCGCAGGAGCATTGCCGTAGAACCTGACCGGCGGCATT
381 GCCGCATTTTTCTTCGCCGGGGCACCATCGC--GAGCA-TGCCG-AGAACCTGACCGGCGGCATT
*
1081990 AGGGTTCTGGCGATCGGGGGGGTCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACT
442 -GGGTTCCGGCGATCGGGGGGG-CGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACT
1082055 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCAT
505 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
1082119 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTATTTCAA
570 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
1082184 ATGATCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
635 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
1082249 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTTCCAAAAAATTTTAAAAAATCCTGA
700 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCC-TTCCAAAAAATTTTAAAAAATCCTGA
*
1082314 ACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
763 ACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* **
1082379 GAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAATATCATTGGCACATAG
828 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
1082438 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTT
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTT
*
1082503 TCTGG-TCGACGTAGAGCCCGCCCGCCCGTCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGC
66 TCTGGCT-GACGT--AG--TGCCCGCCCGTCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * *
1082567 ATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGAGAGCAGGATCGACAGC
126 ATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACTGAGGGTTGCG-GAGCAGGATCGACAGC
* * * *
1082632 ACGCAGAGGGGGACCC-AGTCGATCCTCGACTTACGCATCCCGCCCCTCTGGCCGCTGAGCACCC
189 ACGCAGAGGGGGACCCGA-TCGATCCCCAACTTGCGCATCCCACCCCTCTGGCCGCTGAGCACCC
*
1082696 GCACGCTCGTTTCGTGGG-----T---T--GA--C--T--TAG----GCATACGGAATTCATTCC
253 GCACGCTCGTTTCGTGGGTTACTTGCATAGGATTCATTCCTAGTCAAGCATACGGAGTTCATTCC
* * * *
1082741 CAGTATAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGCTTGGGCATGTGTTGGTGC
318 CAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTGGCTCGGGCATGTGTTGGTGC
* *
1082806 CGCATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCACCGGAGAA-CTGACCGGCGGCATTGG
383 CGCATTTTTCTTCGCCGGGGCACCATCG-CG-AGCAT-GCC-GAGAACCTGACCGGCGGCATT-G
* *
1082870 GGTTCCGGCAATCGAGGGGGCTGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTG
443 GGTTCCGGCGATCGGGGGGGC-GGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTG
1082935 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
507 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
1083000 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGCACACTTTTTTCAAAT
572 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * * * *
1083065 GGTTACAAAATCTTGTAAACTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAGAAAAATAT
637 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
* * * ** *
1083130 AGGGATCGCGTCTACAAAGTTTGGGGTGAAAACCCCTTCCAAAAAATTTTAAAAAAT-CTCGAA-
702 AAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCAAAAAATTTTAAAAAATCCT-GAAC
** * * *
1083193 CAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCAGGTG
765 CA-TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
1083258 AAGGCTTAAGAGACCATTGTATGAATTGACAAGCCATAAAAATGGCATTGGCACACAG
829 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
*
1083316 AAATATGAAGAAGTGCCTAAACCCAC
1 AAATATGAAGATGTGCCTAAACCCAC
1083342 GTTGGGATCC
Statistics
Matches: 1621, Mismatches: 149, Indels: 88
0.87 0.08 0.05
Matches are distributed among these distances:
877 5 0.00
878 282 0.17
879 220 0.14
880 57 0.04
885 3 0.00
887 1 0.00
889 1 0.00
891 3 0.00
892 357 0.22
893 6 0.00
895 1 0.00
897 1 0.00
900 2 0.00
902 2 0.00
903 411 0.25
904 93 0.06
905 3 0.00
906 29 0.02
907 143 0.09
908 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (886 bp):
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTT
TCTGGCTGACGTAGTGCCCGCCCGTCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCGACCAGACTGAGGGTTGCGGAGCAGGATCGACAGCACGCAGA
GGGGGACCCGATCGATCCCCAACTTGCGCATCCCACCCCTCTGGCCGCTGAGCACCCGCACGCTC
GTTTCGTGGGTTACTTGCATAGGATTCATTCCTAGTCAAGCATACGGAGTTCATTCCCAGTCTAA
GATCGGACTGGACCGAGGGTTACGACAGCACATGCTGGCTCGGGCATGTGTTGGTGCCGCATTTT
TCTTCGCCGGGGCACCATCGCGAGCATGCCGAGAACCTGACCGGCGGCATTGGGTTCCGGCGATC
GGGGGGGCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAATCCTTCCAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTTGAA
AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAG
Found at i:1084336 original size:26 final size:26
Alignment explanation
Indices: 1084307--1084359 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1084297 GTTGACTTAG
*
1084307 GCATAC-GAGGTTCATTCCCAGTCTAA
1 GCATACGGA-GTTCATTCCCAGTATAA
1084333 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
1084359 G
1 G
1084360 ATTGGATGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:1086018 original size:872 final size:870
Alignment explanation
Indices: 1083430--1089520 Score: 6970
Period size: 872 Copynumber: 6.9 Consensus size: 870
1083420 CCCAGTCTAA
* * * *
1083430 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * **
1083495 CTCGGACATGTCCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCATCGGAGCATCACCGGAGA
* * * * *
1083560 ACCTGACAGGCGGAATTAGGGTTCTGGCGATCGGGGGAGCCGAGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCCG-GGGGGTGTGCGCACATGATGTG
* * *
1083625 CGATGGGTGGTGGTACTTGGCCCTTATATTGGCACCCTATCCGTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
1083690 ACCCCCTTAAAGAGAATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * *
1083755 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATGTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
1083820 TGCATGCTAACAAAAATACAAGCATCACGTCTAACAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * ** *
1083885 ATTTT-AAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTA
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
1083949 GCCTTGAAACTTAATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
1084014 TTGGCAAGTAGAAATATGAAGATGTGCCTAATACCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCAAGTAGAAATATGAAGATGTGCCTAA-ACCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
1084079 CATCCCGCCTCTCTGGCCGACGTAGTGCCCGGCCACCCGTCCGCCCTCTCGTTTCGTCAGTTGGC
647 CATCCCGCCTCTCTGGCCGACGTAGTGCCC-GCCA---GCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
1084144 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAACAGCAGGATT
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCCGATAGCAGGATC
* * ***** *
1084209 GGCAGCATGCAGAGGGGGACATAACCGATCCCCGACTTGCGCA-CGCCGCCCCTCTGGCCGACTG
773 GACAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATC-CCGCCCCTCTGGCCGGCTG
* **
1084273 AGCGCCCGTACGCTCATTTTATGGGTTGACTTAG
837 AGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
**
1084307 GCATAC-GAGGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATTGGATGGGA
1 GCATACGGA-GTTCATTCCCAGTCTAAG-AT-C-G-G---A---CC-G-----GA-CCGA---G-
* * * *
1084371 TCGAAGATTGTGGCAGCACATGCTGGGCTCGGGTATGTGCTGGTGCCGCATTTTTCTTCGCCGGG
44 --G--G-TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GG
* * * * *
1084436 GCGCCATCATCAGAGCATTACCGGAGAACCTAATCGGCGGCATTGGGGTTCCGACGATCGGGGGG
103 GCACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGG
* * *
1084501 GCCAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTA
167 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
1084566 TCCCTCATCAAACCTTGAGAACTCACACCCCTTTAACGAGCATTTGAGATTTTACAGGTTTGCTG
232 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
1084631 CCAGTAGCCATTAAAGAGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
297 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
1084696 TTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
362 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
1084761 TTGGAGCCAAAACTCCTTCTGAAAAATTTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATC
427 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* * * *
1084826 ATGAAAAATACAAAACGAGTTGTCTTGCCATGAAACTTAAGGTGAAGGCTTAAGGGACCATTGTA
492 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
1084891 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAACCCCACCT
557 TGAATTTACAAGCCATAAAAATGGCATTGGCAAGTAGAAATATGAAGATGTGCCTAA-ACCACCT
* * * * * **
1084956 ACCACCCTATCGATCCACGACTTGTGCATCTCGTCTCTCTGTCCGACGTAGTGCCCGCCCA-AAC
621 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCG-CCAGCCC
* * * * *
1085020 GCCCGCTCATTTCGTCGGTTGGCTTAGGCATATGGGGTTCATTCCCAATCTAAGATCAGATCAGA
685 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* * * * * * * * * *
1085085 CTGAAGGTTTCGGTAGCAGGATTGATAGCACGTAGAGGGGGACTCGGTCGGTCCCCGGCTTGCGC
750 CCGAGGGTTCCGATAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGC
* * ** *
1085150 ATCCAC-CCCCTCTGGCTGGCTAAGCGGTCGCACGCTCATTTCGTGGGTTGAGTTAG
815 ATCC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
* * *
1085206 GCATACGGAGTTTATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* *
1085271 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGACACCATCACCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG-CACCATCATCGGAGCATCACCGGAGA
* * * * *
1085336 ACCTGACCGGCGGCATTGGGGTTCCTACGATCGGGAGAGCCGGGGGGTGTACACTCATGATGTGC
130 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGTGTGCGCACATGATGTGC
*
1085401 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * * *
1085466 CCCCCTTAAAGAGCATTTCAAAATTTACAGGTTCGCTGCCAGTAGCCATTAAAGTGTCTGAAATA
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* * * **
1085531 GGGACACTTTTTTCAAATGG-CACAAAATCTTGTAAAGTTCAAGTTTTTAGCCAAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** * * * *
1085595 GCAAGCCAACAAAAATACAAGGATCATGTCTAAAAAGTTTGGCGTCGAAACACCTTCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
1085660 TTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
1085725 CCATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
1085790 TGGCAAGCAGAAATATGAAGATGTGCCTAATACCACCTACCACCCTATCGATCCACGGCTTGCGC
584 TGGCAAGTAGAAATATGAAGATGTGCCTAA-ACCACCTACCACCCTATCGATCCACGGCTTGCGC
*
1085855 ATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCAACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
648 ATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * *
1085920 CATACGGAGTTCGTTCCCAGTCTAAGATTAGATCAGACCGAGGGTTCCGATAGCAGGATCGACAG
713 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCCGATAGCAGGATCGACAG
* * * * * * *
1085985 TACGCAAAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCTTCTGGGCGGCTGAGCGCT
778 CACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
1086050 CGCACGCTCATTTTGTGGGTTGACTTAT
843 CGCACGCTCATTTCGTGGGTTGACTTAG
* * * * * *
1086078 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTTGCGACAGCACATTCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
*
1086143 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCATCGGAGCATCACCGGAGA
** *
1086208 ACCTGACCGGCGGCATTGGGGTT-TAAGGGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
1086272 CGATGGGTGCTGGTACTTGACCCTTATATTGTCCCCTTATCCCTCATCAAACCTTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
1086337 ACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* *
1086402 GGGGACACTTTTTTCAAATGGTCACAAAATCTGGTACACTTCGAGTTTTTAGCTGACTGTTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTT
* * *
1086467 -AGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * **
1086531 AATTTTAGAAAATCTCAAACCGCAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
1086596 TGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
1086661 ATTGGCACA-TAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCAACGGCTTA
582 ATTGGCA-AGTAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * *
1086725 TGCATCCTGTCTCTCTGGCCGGCGTACTGCCCGCCCGCTCGCCCGCTCGTTTCATCGGTTGGCTT
645 CGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * * *
1086790 AGGCATACAGAGTTAATTTGCC-GTCTAAGATCAGACCGGATCGAGGGTTGCGGTAGCAAGATCG
710 AGGCATACGGAGTTCA-TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCCGATAGCAGGATCG
* * * *
1086854 GCAGCACGCAGAGGGGGACCCGATCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAG
774 ACAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
1086919 CACCCGCAGGCTCGTTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
839 CGCCCGCACGCTC-----AT---TT--C----G--T--G-GGTTGA----C--T-TAG
* *
1086977 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * **
1087042 CTCAGGCATGTACTGGTGCCGTATTTTTC-T--T----CA-C--CA---GAGCATCGTCGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCATCGGAGCATCACCGGAGAA
* * * * *
1087094 CCTGACCGGTGGGATTGGGGTTCCGATGATTGGGGAGGCCAAGGGGGGTGTGCGCGCATGATGTG
131 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCC--GGGGGGTGTGCGCACATGATGTG
* * *
1087159 TGATGGGTGCTGGTAGTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
1087223 ACCCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
*
1087288 GGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
323 GGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * * * * *
1087353 GTGC-T---TTCAAAAATACAAGGATCAGGTCTTCCAAGTTTGGGGCCAAAACACCATGCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
1087414 AATTTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTCT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
1087479 TGCCATGAAACTTCACGTGACGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
1087544 ATTGGTATGCAGAAATATGAGGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGACTTGT
582 ATTGGCAAGTAGAAATATGAAGATGTGCCTAAACC-ACCTACCACCCTATCGATCCACGGCTTGC
* *
1087609 GCATCCCGCCTCTCTGGCTGGA-GTAGTGCCTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTG
646 GCATCCCGCCTCTCTGGC-CGACGTA--G--TGCCCGCCAGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
1087673 GCTTAGGCATACGGAGTTCATTCCCTGTCTAAAATCAGACCAGACCAAGGGTTGC-AGCAGCAAG
706 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCCGA-TAGCAGG
* *
1087737 ATTGACAGCACGTAGAGGGGGACCCGATCGAGGGGGACCCGGTCGATCCCCAACTTGCGCATCCC
770 ATCGACAGCAC---------G---C-A--GAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCC
* *
1087802 GCCCCTCTGGCCAGC-GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
820 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
1087852 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGACCTGACTAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A--CC--G-----GA-C---C--G--
* * *
1087917 CAAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTAGTGCCACATTTTTCTTCGTCGGGG
42 --AGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGG
* * * * * **
1087982 CACCGTCGTCGGAGCATCTCCGGAGAACCTAACCGGCGGCATTAGGGTTCCGGTGATCGGGGGGG
104 CACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
* * *
1088047 CCGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTAA
168 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
1088112 CGCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGC
233 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
1088177 CAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGTTTACAAAATCTTGTACACT
298 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
1088242 TCGAGTTTTTAGCTGCATTTTTTTGTGCATGCCAA-AGAAAATACAAGGATCACGTCTACCAAGT
363 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA-AAAATACAAGGATCACGTCTACCAAGT
* ** * *
1088306 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTAAACTGCAAAAAGTTT-GAAAATC
427 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
1088370 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
492 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
1088435 TGAATTTACAAGCCATGAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTTAACACACCT
557 TGAATTTACAAGCCATAAAAATGGCATTGGCAAGTAGAAATATGAAGATGTGCCTAAAC-CACCT
* * ** * * * *
1088500 ACCACCCTATCGATCAACGGCTTGCGCATCCCGCTTCTCTGATCGGCATAGTGCCCACCTGCCCG
621 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCAGCCCG
* * * * **
1088565 CCCGTTCGTTTCGTCGGTTGGCATAGGCATATGGAGTTCATTCCCACTCTAAGATTGGACC-GAA
686 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-A
* * * * * * * * *
1088629 CCGAAGGGTGCAG-TAGCAGGATAGGCAGCACACAGAGGAGCACCC-GACCATTCCCC-AGCTTG
750 CCG-AGGGTTCCGATAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGA-TCCCCGA-CTTG
* * * * *
1088691 CGCATCCCGCCCCTCTGGCCGACTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAG
812 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAG
1088750 GCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAGTCCAAGATCGGACCGGAC
1 GCATACGGAGTTCA----T--TC----C---C--AG-----T--C--T--AAGATCGGACCGGAC
* * * * * * **
1088815 CAAGGGTTGCGACAACCCATACTGGGCTCGGGAATGTGCTGGTGCCACATTTTTCTTCACCGAGG
40 CGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG-GG
* * *
1088880 CA-C--CAT-----CAT---CGGAGAACCTGATCGACGGCATTGGGGTTCCGGCGATCGGGGGGC
104 CACCATCATCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGC
** * *
1088934 CGGGGGGGTGTGCGTGCATGATGTGCGATGGATGCTGGTACTTGGGCCTTATATTGGCCCCCTAT
169 C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
1088999 CCCTCATCAAACCTCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
233 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
1089064 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTTCACT
298 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * * * *
1089129 TTGAGTTTTTAGCTGAATGTTTTTGTGCATCCCAAAAAAAATACAAGGATCACGTCTTCTAAGTT
363 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
1089194 TGGGGCCAAAACTCCTTTCGAAAAAATTATAAAAAATCCCGAACTGCCAAAAGTTTCAAAAAACA
428 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * * *
1089259 TGAAAAATAGAAAACGAGTCTTCTTGGCATGAAACTTCACGTGAATGCTTAAGGGACCACTGTAT
493 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
1089324 GAATTTACAAGCCATAAAAATGGCATTTGCACA-TAGAAATATGAAGATGTGCCTAAACCCACCT
558 GAATTTACAAGCCATAAAAATGGCATTGGCA-AGTAGAAATATGAAGATGTGCCTAAA-CCACCT
*
1089388 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGTCGACGTACTGCCTGCCCCGCCA
621 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTA--G--TG-CCCGCCA
* * * * *
1089453 CCCGCCCGTCCGTACGTTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCACTCCCAGTCTAAG
681 ---GCCCG-CC---CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1089518 ATC
739 ATC
1089521 GGACAAGATC
Statistics
Matches: 4468, Mismatches: 546, Indels: 377
0.83 0.10 0.07
Matches are distributed among these distances:
871 5 0.00
872 772 0.17
873 693 0.16
874 12 0.00
875 29 0.01
876 6 0.00
877 25 0.01
878 6 0.00
879 3 0.00
880 1 0.00
881 2 0.00
882 9 0.00
883 242 0.05
884 8 0.00
885 43 0.01
886 119 0.03
887 508 0.11
888 173 0.04
889 4 0.00
890 5 0.00
891 6 0.00
892 8 0.00
893 9 0.00
894 2 0.00
895 4 0.00
896 14 0.00
897 46 0.01
898 105 0.02
899 258 0.06
900 53 0.01
901 59 0.01
902 316 0.07
903 304 0.07
904 9 0.00
907 1 0.00
908 3 0.00
909 2 0.00
910 1 0.00
911 2 0.00
912 84 0.02
913 114 0.03
914 103 0.02
915 46 0.01
916 169 0.04
917 74 0.02
918 1 0.00
920 2 0.00
921 1 0.00
922 2 0.00
923 2 0.00
924 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (870 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCATCGGAGCATCACCGGAGAA
CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCAAGTAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGCCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCCGATAGCAGGATCGACAGCAC
GCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCATTTCGTGGGTTGACTTAG
Found at i:1086988 original size:26 final size:26
Alignment explanation
Indices: 1086951--1087003 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1086941 GTTGACTTAG
1086951 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1086977 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1087003 G
1 G
1087004 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1087771 original size:15 final size:15
Alignment explanation
Indices: 1087751--1087782 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
1087741 ACAGCACGTA
1087751 GAGGGGGACCCGATC
1 GAGGGGGACCCGATC
*
1087766 GAGGGGGACCCGGTC
1 GAGGGGGACCCGATC
1087781 GA
1 GA
1087783 TCCCCAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.25, G:0.50, T:0.06
Consensus pattern (15 bp):
GAGGGGGACCCGATC
Found at i:1087888 original size:26 final size:26
Alignment explanation
Indices: 1087852--1087904 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1087842 GTTGACTTAG
1087852 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1087878 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1087904 G
1 G
1087905 ACCTGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1089196 original size:887 final size:890
Alignment explanation
Indices: 1086078--1089428 Score: 4332
Period size: 887 Copynumber: 3.7 Consensus size: 890
1086068 GTTGACTTAT
* * * * * *
1086078 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACTGGACCAAGGGTTGCGACAGCACATTCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAACACATGCTGGG
* ** *
1086143 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGG---CA-C--C---GCATCATCGGAGA
**
1086208 ACCTGACCGGCGGCATTGGGGTTTAAGG-GATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
122 ACCTGACCGGCGGCATTGGGG-TTCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * **
1086272 CGATGGGTGCTGGTACTTGACCCTTATATTGTCCCCTTATCCCTCATCAAACCTTGAGAACTCAC
186 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
1086337 ACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAAT
251 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAAT
* *
1086402 GGGGACACTTTTTTCAAATGGTCACAAAATCTGGTACACTTCGAGTTTTTAGCTGACTGTTTTT-
316 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
* *
1086466 TAGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCTGAAAA
381 T-GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * **
1086531 AATTTTAGAAAATCTCAAACCGCAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCT
445 AATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
1086596 TGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
510 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* **
1086661 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCAACGGCTTAT
575 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGC
* * * * * * *
1086726 GCATCCTGTCTCTCTGGCCGGCGTACTGCCCGCCCGCTCGCCCGCTCGTTTCATCGGTTGGCTTA
640 GCATCCCGCCTCTCT-GCCGGCATAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * *
1086791 GGCATACAGAGTTAATTTGCCGTCTAAGATCAGACCGGATCG-AGGGTTGCGGTAGCAAGATCGG
704 GGCATACGGAGTTCA-TTCCCGTCTAAGATCAGACCGAACCGAAGGGTTGCAGTAGCAAGATAGG
* * * **
1086855 CAGCACGCAGAGGGGGACCCGATCGA-TCCTC-GACTTGCGCATCCCGCCCCTCTGGCCGGTTGA
768 CAGCACGCAGAGGGGGACCCGACCCATTCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGACTGA
* * *
1086918 GCACCCGCAGGCTCGTTTTATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
832 GCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1086977 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAACACATGCTGGG
* * ** *
1087042 CTCAGGCATGTACTGGTGCCGTATTTTTCTTCACC-A-G-A--GCATCGTCGGAGAACCTGACCG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCGCATCATCGGAGAACCTGACCG
* * * * * *
1087102 GTGGGATTGGGGTTCCGATGAT-TGGGGAGGCCAAGGGGGGTGTGCGCGCATGATGTGTGATGGG
131 GCGGCATTGGGGTTCCGGTGATCAGGGG-GGCC--GGGGGGTGTGCGCACATGATGTGCGATGGG
*
1087166 TGCTGGTAGTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
*
1087230 TAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACA
* * *
1087295 CTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGC-TT
323 C-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATG
* * * * *
1087359 TC---AAAAATACAAGGATCAGGTCTTCCAAGTTTGGGGCCAAAACACCATGC-GAAAAAATTTT
387 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCTGAAAAAATTTT
* * * * *
1087420 TAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGCCAT
451 AAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
1087485 GAAACTTCACGTGACGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGCATTGGT
516 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*** * * * * *
1087550 ATGCAGAAATATGAGGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGACTTGTGCATCC
581 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCC
*
1087615 CGCCTCTCTGGCTGG-AGTAGTGCCTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
646 CGCCTCTCT-GCCGGCA-TA--G--TGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
1087679 GCATACGGAGTTCATTCCCTGTCTAAAATCAGACC-AGACC-AAGGGTTGCAGCAGCAAGATTGA
705 GCATACGGAGTTCATTCCC-GTCTAAGATCAGACCGA-ACCGAAGGGTTGCAGTAGCAAGATAGG
* * *
1087742 CAGCACGTAGAGGGGGACCCGATCGAGGGGGACCCGGTCGATCCCCAACTTGCGCATCCCGCCCC
768 CAGCACGCAGAGGGGGA-CC---C------GACCC-AT---TCCCCAGCTTGCGCATCCCGCCCC
* *
1087807 TCTGGCC-AGC-GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
819 TCTGGCCGA-CTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
1087870 CAGTCTAA
883 CAGTCTAA
* * * ** *
1087878 GCATACGGAGTTCATTCCTAGTCTAAGACCTGACTAGACCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAACACATGCTGGG
* * ** * *
1087943 CTTGGGCATGTGCTAGTGCCACATTTTTCTTCGTCGGGGCACCGTCGTCGGAGCATCTCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCA-C--CG-C--ATCA--T-CGGAGA
* * * *
1088008 ACCTAACCGGCGGCATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCAAATGATGTGC
122 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
1088073 GATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTAACGCTCATCAAACCTCAAGAACTCACA
187 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
*
1088138 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATG
252 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATG
* * * *
1088203 GGGACACTTTTTTCAAATGTTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGCATTTTTTTGT
317 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGT
*
1088268 GCATGCCAAAGAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
382 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* *
1088333 TTTTAAAAAATC-CTAAACTGCAAAAAGTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTCTT
447 TTTTAAAAAATCTC-AAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
1088396 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCA
511 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
1088461 TTGGCATGTAGAAATATGAAGATGTGCCTTAACACACCTACCACCCTATCGATCAACGGCTTGCG
576 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCG
* * * * *
1088526 CATCCCGCTTCTCTGATCGGCATAGTGCCCACCTGCCCGCCCGTTCGTTTCGTCGGTTGGCATAG
641 CATCCCGCCTCTCTG-CCGGCATAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** *
1088591 GCATATGGAGTTCATTCCCACTCTAAGATTGGACCGAACCGAAGGG-TGCAGTAGCAGGATAGGC
705 GCATACGGAGTTCATTCCC-GTCTAAGATCAGACCGAACCGAAGGGTTGCAGTAGCAAGATAGGC
* * *
1088655 AGCACACAGAGGAGCACCCGA-CCATTCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
769 AGCACGCAGAGGGGGACCCGACCCATTCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* *
1088719 ACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
834 ACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1088776 GCATACAGAGTTCATTCCCAGTCCAAGATCGGACCGGACCAAGGGTTGCGACAACCCATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAACACATGCTGGG
* *
1088841 CTCGGGAATGTGCTGGTGCCACATTTTTCTTCACCGAGGCA-C-CATCATCGGAGAACCTGATCG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCGCATCATCGGAGAACCTGACCG
* * ** *
1088904 ACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGTGCATGATGTGCGATGGATG
131 GCGGCATTGGGGTTCCGGTGATCAGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* **
1088968 CTGGTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCACACCCCCTTA
195 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
* *
1089033 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACT
* * * *
1089098 TTTTTCAAATTGTCACAAAATCTTGTTCACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATCCCA
325 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCA
* * *
1089163 AAAAAAATACAAGGATCACGTCTTCTAAGTTTGGGGCCAAAACTCCTT-TCGAAAAAATTATAAA
390 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAA
* * * * * * *
1089227 AAATCCCGAACTGCCAAAAGTTTCAAAAAACATGAAAAATAGAAAACGAGTCTTCTTGGCATGAA
454 AAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
1089292 ACTTCACGTGAATGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTTGCACA
519 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
*
1089357 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
584 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCGC
1089422 CTCTCTG
649 CTCTCTG
1089429 GTCGACGTAC
Statistics
Matches: 2140, Mismatches: 248, Indels: 139
0.85 0.10 0.06
Matches are distributed among these distances:
883 240 0.11
884 9 0.00
885 38 0.02
886 113 0.05
887 519 0.24
888 169 0.08
890 3 0.00
891 1 0.00
892 1 0.00
893 1 0.00
894 1 0.00
897 35 0.02
898 148 0.07
899 87 0.04
900 1 0.00
901 142 0.07
902 30 0.01
903 1 0.00
904 1 0.00
908 1 0.00
909 1 0.00
910 1 0.00
911 2 0.00
912 97 0.05
913 112 0.05
914 105 0.05
915 37 0.02
916 172 0.08
917 72 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGACAACACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCGCATCATCGGAGAACCTGACCG
GCGGCATTGGGGTTCCGGTGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA
AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
ATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCTTGCGCATCCCGCCT
CTCTGCCGGCATAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCCGTCTAAGATCAGACCGAACCGAAGGGTTGCAGTAGCAAGATAGGCAGCACGCAGAGG
GGGACCCGACCCATTCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTC
GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1089830 original size:25 final size:26
Alignment explanation
Indices: 1089794--1089845 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
1089784 GGTGACTTAG
*
1089794 GCATACAGAGTTCATT-CCAATCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
*
1089819 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAATCTAA
1089845 G
1 G
1089846 ATCGAACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAATCTAA
Found at i:1090707 original size:26 final size:26
Alignment explanation
Indices: 1090677--1090729 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1090667 GTTTACTTAG
*
1090677 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
*
1090703 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
1090729 G
1 G
1090730 ATTGGACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCACTCTAA
Found at i:1091875 original size:903 final size:894
Alignment explanation
Indices: 1089577--1092337 Score: 3794
Period size: 895 Copynumber: 3.1 Consensus size: 894
1089567 GTGACCCAAC
* * * * * *
1089577 CTCTCTGGCCGACATAGTGCCCGCCCGCCCCGCTCACTCGTTTCATCGATTGGTTTAGGCATACG
1 CTCTCTGGCCGACGTAGTGCCTGCCCGCCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* *** * * *
1089642 GAGTTCATTCCCAGTCTAAGATCGGATTGGACCA-AGGGTTGCAACAGCAGGATCGGCAGCACAC
66 GAGTTCATTCCCAGTCTAAGATCGGATCGGA-CAGAGGGTTGTGGCAGTAGGATCAGCAGCACGC
* * * * *
1089706 AAAAGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGACTGAA-CGCCCGAA
130 AGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCG-CT-AAGCACCCGCA
* * *
1089770 CGCTCA-TTTCGTGGGGTGACTTAGGCATACAGAGTTCATT-CCAATCTAAGCATACAAAGTTCA
193 CGCT-AGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGAAGTTCA
* * * *
1089833 TTCCCAGTCTAAGATCGAACCGGACC-AAGGGTTGTGGCAGCCCATGCTGGGCTCGAGAATGTGC
257 TTCCCAGTCTAAGATCGGACCGGACCGAA-GGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGT
* *
1089897 TGGTGCCGCATTTTTCTTCACCGAGGCACAAT--C---GC--CG-GAGAACCTGACCGACGACAT
321 TGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCGGAGCATCGTGAGAACCTGACCGACGACAT
* * * *
1089954 TGGGGTTTCGACGATCGGGGGGGGCCGGGGGTGTGCGCACATGTTGTTCGATAGGTGCTGGTACT
386 TGGGGTTTCGACGATCGGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* * * *
1090019 TGGCCCTTATATTAGCCCGCTATCCCTCATCAAACCTCGAGAACTCATATCCCCTTAAAGAGCAT
451 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAGAGCAT
* *
1090084 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGTGACATTTTTTTCAA
516 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
1090149 ATGG-CTACAAAATCTTGTACACATCGAGTTTTCGGCTGAATTTTTTTATGCATGCCAACAAAAA
581 ATGGTC-ACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTATGCATGCCAACAAAAA
* * *
1090213 TACAAGGATCATGTCTACCAAGTTT-GGCACCAAAAATTCTTCCGAAAAAATTTTAAAAAATTCT
645 TACAAGGATCACGTCTACCAAGTTTGGGC-CCAAAAATCCTT-CGAAAAAATTTTAAAAAATCCT
*
1090277 GAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCAC
708 GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA-TAAACTTCAC
* *
1090342 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACGTAGAAAT
772 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
** *
1090407 ATGAAGATGTGCCTAAACCCACCTACCACAATATCGATCCACGGCTTGCGCATCCCGC
837 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
1090465 CTCTGTGGTCGACGTA--G--TGCCCG-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
1 CTCTCTGGCCGACGTAGTGCCTGCCCGCCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * * * * *
1090525 GAGTTTATTCCCAGTCTAAGATCGGACCGGACAGAGGCTTGTGGTAGTAGGATCAGTAGCACG-T
66 GAGTTCATTCCCAGTCTAAGATCGGATCGGACAGAGGGTTGTGGCAGTAGGATCAGCAGCACGCA
* * * *
1090589 GAAGAGGGACCCGATTGATCCCCGGCTTGTGCAT-CTCGCCCCTCTGGTCGGCTGAGCACCCGCA
131 G-AGGGGGACCCGATCGATCCCCGGCTTGTGCATCCT-GCCCCTCTGG-CCGCTAAGCACCCGCA
* * * * *
1090653 CACTCGTTTCATGGGTTTACTTAGGCATACGGAGTTCATTCCCACTCTAAGCATACGAAGTTCAT
193 CGCTAGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGAAGTTCAT
* ** * * * * *
1090718 TCCCAGTCTAAGATTGGACCAAAACGAGGGTTGCGGCGGCACATGCTGGGCTCGAGCATTTGTTG
258 TCCCAGTCTAAGATCGGACCGGACCGAAGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGTTG
* *
1090783 GTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGAATCGTCGGAGAACCTGACCGACGGCA
323 GTGCCGCATTTTTCTTCACCGGGGCACCATCG-CGGAGCATCGT--GAGAACCTGACCGACGACA
* * *
1090848 TTGGGGTTTCGACGATC-GAGGGGGCTGGGGGGTGTGCACACATGATGTGCGATGGGTGTTGGTA
385 TTGGGGTTTCGACGATCGGGGGGGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
1090912 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTATGAGAACTCACACCGCCTTAAAGAG
449 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TGAGAACTCATACCCCCTTAAAGAG
* *
1090976 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTTTGAAATGGGGACACTTTTTT
513 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
1091041 CAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATATTTTTGTGCATGCCAACAAA
578 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTATGCATGCCAACAAA
* *
1091106 AATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTGCGAAAAAGTTTTAGAAAAATC
643 AATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAAATCCTT-CGAAAAAATTTTA-AAAAATC
* * *
1091171 CCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
706 CTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT-AAACTTC
*
1091236 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAA
770 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
1091301 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
835 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
1091361 CTCTCTGGCCGACGTAGTGCCTGCCCGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
1 CTCTCTGGCCGACGTAGTGCCTGCCCG--C-CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * * * * *
1091426 ATGGAGTTCATTCCCAGACTAAGATCAGATCAGACTGAGGGTTGTGGCAGTAGGAT-TGCAGCAC
63 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACAGAGGGTTGTGGCAGTAGGATCAGCAGCAC
* *
1091490 GCAGAGGGGGACCCGATCGATCCCCAGCTTGTGCATCCTACCCCTCTGGCCAGCTAAGCACCCGC
128 GCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCC-GCTAAGCACCCGC
* * *
1091555 ACGCTAGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTTTAAGCATACGGAGTTCA
192 ACGCTAGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGAAGTTCA
* * *
1091620 TTCCCAGTC-AAGATCGGACTGGACCGAAGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGTT
257 TTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGTT
**
1091684 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTAGAGAACCTGACCGACGAC
322 GGTGCCGCATTTTTCTTCACCGGGGCACCATCG-CGGAGCATCG-T-GAGAACCTGACCGACGAC
* * * * *
1091749 ATTAGAGTTCCGACGATCGGGGGGGGCGGGGGGGTGTGTGCACATGATGTGCAATGGGTGCTGGT
384 ATTGGGGTTTCGACGATCGGGGGGGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1091814 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAGAG
448 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAGAG
1091879 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAGTGTCTGAAATGGGGACACTTTTTT
513 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
1091943 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAAGCCAACAAA
578 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTATGCATGCCAACAAA
* * *
1092008 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCATAAAAATTTTAAAAAATCT
643 AATACAAGGATCACGTCTACCAAGTTTGGGCCCAAAAATCCTTCGA-AAAAATTTTAAAAAATCC
* * *
1092073 TGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCG---T-CC-----CTTCAA
707 TGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAACTTCAC
* *
1092129 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
772 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
* *
1092194 ATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCAACCCGT
837 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* ** * * *
1092252 GTCTCTGGCCGGTGTAGTGCCTGCCTGCTCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAT
1 CTCTCTGGCCGACGTAGTGCCTGCC--CGC-CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
*
1092317 ACGGAGTTCATTCCCGGTCTA
63 ACGGAGTTCATTCCCAGTCTA
1092338 TCGGGTGGGC
Statistics
Matches: 1649, Mismatches: 182, Indels: 81
0.86 0.10 0.04
Matches are distributed among these distances:
882 5 0.00
883 159 0.10
884 108 0.07
885 1 0.00
886 1 0.00
887 1 0.00
888 13 0.01
890 1 0.00
891 196 0.12
892 2 0.00
893 1 0.00
894 9 0.01
895 290 0.18
896 202 0.12
897 2 0.00
898 2 0.00
900 6 0.00
901 51 0.03
902 253 0.15
903 261 0.16
904 85 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
CTCTCTGGCCGACGTAGTGCCTGCCCGCCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCGGATCGGACAGAGGGTTGTGGCAGTAGGATCAGCAGCACGCA
GAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGCTAAGCACCCGCACGC
TAGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCC
CAGTCTAAGATCGGACCGGACCGAAGGTTGTGGCAGCACATGCTGGGCTCGAGCATGTGTTGGTG
CCGCATTTTTCTTCACCGGGGCACCATCGCGGAGCATCGTGAGAACCTGACCGACGACATTGGGG
TTTCGACGATCGGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTATGCATGCCAACAAAAATACAAG
GATCACGTCTACCAAGTTTGGGCCCAAAAATCCTTCGAAAAAATTTTAAAAAATCCTGAACCGTA
AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
Found at i:1092921 original size:26 final size:26
Alignment explanation
Indices: 1092885--1092936 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1092875 TTGACTTAGT
*
1092885 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
1092911 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
1092937 ATCAGATCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:1093806 original size:25 final size:25
Alignment explanation
Indices: 1093777--1093825 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
1093767 GGGTTGACTT
*
1093777 AAGCATACGGAGTTCATTCCCAGTG
1 AAGCATACGAAGTTCATTCCCAGTG
1093802 AAGCATACGAAGTTCATTCCCAGT
1 AAGCATACGAAGTTCATTCCCAGT
1093826 CTAAGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (25 bp):
AAGCATACGAAGTTCATTCCCAGTG
Found at i:1094674 original size:26 final size:26
Alignment explanation
Indices: 1094638--1094690 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1094628 GTTGACTTAG
* *
1094638 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
1094664 GCATACAGAGTTCATTACCAGTCTAA
1 GCATACAGAGTTCATTACCAGTCTAA
1094690 G
1 G
1094691 ATTGGACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTACCAGTCTAA
Found at i:1096459 original size:26 final size:26
Alignment explanation
Indices: 1096422--1096474 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1096412 GTTGACTTAG
1096422 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1096448 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1096474 G
1 G
1096475 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1097234 original size:903 final size:898
Alignment explanation
Indices: 1094189--1099499 Score: 6365
Period size: 903 Copynumber: 6.0 Consensus size: 898
1094179 GCTGAATTTT
* * * *
1094189 TTTGGGGCGAAAACTCCTTCCGAAAAAATTTTAAAAAATACC-AAACCTTAAAAAGTTTCAAAAA
1 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAT-CCTGAACCTCAAAAAGTTTCAAAAA
1094253 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
65 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
*
1094318 TATGAATTTACATGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
130 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * *
1094383 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCAGTGTAATGCCTGCCCGTC
195 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGA-CGTAGTGCCCGCCCGTC
* * * * *
1094448 CGCCCGCCCGTTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATCTAAGATCAGA
259 CG--TG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * ** *
1094513 CTGGACTGAGGGTTACGATAGCAGGATCGGTAGCACACAGAGGGGGCCCCTTTCGATCC-CGGCT
321 CCGGACCGAGGGTTACGA-AGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCTCGACT
* * * ** * *
1094577 TGCGCATCTCACCCTTCTGGCATGCTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
385 TACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCAT
* * *
1094642 ACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTACCAGTCTAAGATTGGACCTGACCGAG
450 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAG
* * * * * * *
1094707 GGTTGCAACAGCAAATGCTGGGCTCGAGCAGGTGCTGGTGCCGCATTTTTCTTTC-CCGAGGCAC
515 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTC-TTCGTCGGGGCAC
* * * * *
1094771 CATCGCCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGGGTTTCGGCTATCAGG-TGG
579 CATCG-CTGGAGCATCGCCGGAGAACCTGACCGGCGGCATT--GGGGTTCCGACGATC-GGAGGG
1094835 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
640 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
1094900 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
705 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * **
1094965 CCAGTAGCCAGTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTACACAC
770 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
1095030 TTCGAGTTTTTAGCTGAATTTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGT-TACCAAG
835 TTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
1095094 TTTGGGGCCAAAACACCTACAGAAAAAATTTAAAAAAAT-CTCGAACCGT-AAAAAGTTT-AAAA
1 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCT-GAACC-TCAAAAAGTTTCAAAA
*
1095156 ATCGTGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
64 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
** *
1095221 GTATGAATTTACAAGAAATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCTA
129 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * ** *
1095286 CCTACCACCCTATCGATCCACGGCTTCCGCATCCTGTCTCTCTTACCGACATAGT----GCCCG-
194 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC-TGGCGACGTAGTGCCCGCCCGT
* * * * **
1095346 CC-T---GCTCGTTTCGTTGGTTGGCATAGGCATACGGAGTTCATTCCCAGTCTAAGTTCAAATT
258 CCGTGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* *
1095407 GGACCGAGGGTT---------G--CGGCAGCACACAGAGGGGGACCCGGCCGAT-CTCCGGCTTA
323 GGACCGAGGGTTACGAAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCT-CGACTTA
* * * * * *
1095460 CGCATCCCGCCCCTATGGCCGGCTGAGCGCCTGCACACTCGTTTTATGGGTTGACTTAGGCATAT
387 CGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC
* * * * *
1095525 GTAGTTCATTCCCAGTCTAAGCATGCAGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGG
452 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGG
* * *
1095590 TTGCGGCACCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCAT
517 TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCAT
* * * * *
1095655 CGTTGTAGCATCGCCGGAGAAACTGACCGGCGGCATTGGGGTTCTGACGATCGGAGGGGCCGAGG
582 CGCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGG
* * *
1095720 GGTGTGCGCACATGATGTAC-ATTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCGTC
647 GGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
1095784 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
711 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
1095849 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG
776 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
1095914 TTTTTAGCTGAAATTTTTTGTGCATGCCAACAAATATACAAGGATCACGTCAACCATG
841 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * * * **
1095972 CTTGGGGCCAAAAGTGCTTCTAAAAAAATTTAAAAAAATCCTGAACCGCAAAAAGTTTTGAAAAT
1 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAAT
* *
1096037 CGTGAAAAATAGAAAACGAGTTGTCTTG-CACTGAAACTTTACGTGAAGGCTTAAGGGACCATTG
66 CGTGAAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
1096101 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATTTTCCTAAACCAAC
130 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * *
1096166 CTACCAACCTATCAATCCACGGCTTGCGGATCCCGTCTCTCTGGATGGCGTAGTGCCTGCCCGCT
195 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGACGTAGTGCCCGCCCG-T
** * * * * * **
1096231 CGCCCCGCTTGCTCGGTTCGTCGGTTGGATTAGGCATACAGAGTTCATT-CCAGTATAAGATTGG
258 --CCGTGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
** * ** * * * *
1096295 ACCACACCAAGGGTTGTGGCAA-CAAGATCTGCAGCACGCAG-GGAGGGACCCGATCGATCCTCG
320 ACCGGACCGAGGGTT-ACG-AAGCAGGATCGGCAGCACACAGAGG-GGGACCCGGTCGATCCTCG
* * ** *
1096358 ACTTACGCATCTCACCCCTCTGGCTGGCTGAAAGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
382 ACTTACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
* *
1096423 CATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACC
447 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACC
* *
1096488 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTCTCTTCGTCGGGGC
512 GAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGC
* * * * * *
1096553 ACCATCGCTGGAGCATCGCCGAAGAATCTAACCGGCGACATTGGGGTTCCAACGATCGGGGGGGC
577 ACCATCGCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGC
*
1096618 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATC
642 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
1096683 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTCTATAGGTTTGCTGCC
707 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
1096748 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
772 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * * *
1096813 CGACTGTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATTACATCTACCAAG
837 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* **
1096875 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCTCAAAAAGTTTTGAAAAT
1 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAAT
*
1096940 CGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
66 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
** *
1097005 ATGAATTTACAAGTAATAAAAATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAACCCACC
131 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
1097070 TACCACCCTATCGATCCACGGCTTGCGCATCTCATCTCTCTGGTCGACGTAGTGCCCACCCGTCC
196 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGACGTAGTGCCCGCCCGTCC
* * **
1097135 GTTTGCCCGATTGTTTCGTCGGTTGGCTTAGGCATATTGAGTTCATTCCCAGTCTAAGATCAGAC
260 G--TG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * *
1097200 CGGACCGAGGGTTACGACACCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTT
322 CGGACCGAGGGTTACGA-AGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCTCGACTT
* * * * *
1097265 ATGCATCCCGCCCCTCTCGCCAGCTGAGCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATA
386 ACGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
* * * * * * *
1097330 TGGAGTTCACTGCAAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTAGACCGGACTGAGG
451 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGG
* * * * *
1097395 GTTGCGATAGTACATGCTGGGCTCGGGCATGTGCTGGTGCCTCATTTTTCTTTGTTGGGGCACCA
516 GTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA
* *
1097460 TCGCT-G-G-A----C---G-ACATTA---GC-G---T----TT-CGACGATCGG-GGCGGCCGG
581 TCGCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGG-GGCC-G
1097501 TGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
644 -GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
1097566 CTCATCAAACCTTGAGAACTCACACCCCCGTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCA
708 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* *
1097631 GTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTACACTTC
773 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
1097696 GAGTTTTTAACTGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
838 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
1097757 TTTGGGGTCAAAACTCCTTCTGAAAAAATTGTAAAAAATCCCGAACGGT-AAAAAGTTTCAAAAA
1 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAAC-CTCAAAAAGTTTCAAAAA
* * * *
1097821 TCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGTCCATTT
65 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *** *
1097886 TGTGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGATGATGTGCCTAAACCCAC
130 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
1097951 CTACCACCCTATCGATCCACAGCTTGCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
195 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGACGTAGTGCCCGCCCGTC
* * * * * * *
1098016 CGT-TCGCTCGTTTCATCGATTGACTTAGGCATACGGAGTTCATTCCTAGTCCAAGATCAGACAG
259 CGTGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * ** * *
1098080 GACTGAGGGTTGCAGAAGCAGGATCAGCAGCAAACAGAGGGGCACCCGAACGAT-CTCGGCTTGC
324 GACCGAGGGTTAC-GAAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCTCGACTTAC
* * * * ** * *
1098144 GCATACC-GCCTTACT-GCCGGTTGAGCG-CCGCAACAATCATTTCATGGGTTGA-ATAGGCATA
388 GCATCCCACCCCT-CTGGCCGGCTGAGCGCCCGC-ACGCTCGTTTCATGGGTTGACTTAGGCATA
* * *
1098205 CGGAGTTCATT-CCAGTCTACAGCA-ATGGA-TT-ATT--CAGTCTAAGATCGGACTGGA-CGAG
451 CGGAGTTCATTCCCAGTCTA-AGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAG
* * *
1098263 GGTTACGGCAGCACATGCT-GGCTCGGGCATGGTGCTGGTGCCCCATTTTTC-T--T--------
515 GGTTGCGACAGCACATGCTGGGCTCGGGCAT-GTGCTGGTGCCACATTTTTCTTCGTCGGGGCAC
* * * *
1098316 CATCG--GG-GCATCGTC-G-G-A-C--A------ACATT-GGGTTACGACGATCGGAGGGG-CA
579 CATCGCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCG
* *
1098364 GGGGGTGTGCAC-CATGATGTGTGAT-GGTGCTGGTACTTGG-CCTTATTATTGG-CCCCTATCC
644 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA-TATTGGCCCCCTATCC
* *
1098425 CTCATCAAACCTTGAGAACTCACA--CCCTGTAAAGAGCATTTGAGATTTTGACAATGTTTGCTG
708 CTCATCAAACCTCGAGAACTCACACCCCCT-TAAAGAGCATTTGAGATTTT-AC-AGGTTTGCTG
* * * *
1098488 CCAGTGGCCATTAAAGTGTTTGAAATGGGGACACTGTTTTCAAATAGTCACAAAATCTTGTACAC
770 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
1098553 TTCGAGTTTTTAACTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAG
835 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
1098617 TTTGGGGTCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCCAAAAT
1 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAAT
1098682 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
66 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *** *
1098747 ACGAATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAATATGAAGATGTGCCTAAACCCACA
131 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
1098812 TACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCAGTCGTAGTGCCCGCCCTTCC
196 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-GACGTAGTGCCCGCCCGTCC
* * **
1098877 GT-CCGCTCGTTTCGTCGGTTGGCTTTGGCATACGGAGTTCATTCCCAGCCTAAGATTGGACCGG
260 GTGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* *** * * * * **
1098941 ACCGAGGGTTACGTTAGCAGGATTACCAGCACGCAGAGGGGGACACGGTCGACCCCCGACTTGTG
325 ACCGAGGGTTACG-AAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCTCGACTTACG
* * * * * * *
1099006 CATCCCGCCTCTCTGGCTGGCTGAGCGCCCACACGCTCATTTCGTTGGTTGACTTAGGCATACGG
389 CATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
*
1099071 AGTTCATTCCTAGTCTAAG-AT-CGGA---C--T----G-C---------ACC--A---AGGGTT
454 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTT
* * *
1099110 ACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACCATCG
519 GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG
** * * * *
1099175 -TCGGAGCATTACCGGAGAACCTGACCGGCGGCATTAGGGTTCCGGCGATCGAAAGGGCCAGGGG
584 CT-GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCC--GGG
*
1099239 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTC
646 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
1099304 ATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
711 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
1099369 GCCATTAAAATGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG
776 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * ** * *
1099434 TTTTTACCTGAATTTTTTTGTGCATGCCAACGAAAATACAACAATGACGTCTAACAAG
841 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
1099492 TTTGGGGC
1 TTTGGGGC
1099500 ACCATCGCCG
Statistics
Matches: 3826, Mismatches: 453, Indels: 284
0.84 0.10 0.06
Matches are distributed among these distances:
843 38 0.01
844 12 0.00
845 1 0.00
846 1 0.00
847 2 0.00
854 5 0.00
856 3 0.00
857 11 0.00
858 26 0.01
859 44 0.01
860 485 0.13
861 29 0.01
862 44 0.01
863 27 0.01
864 10 0.00
865 12 0.00
866 3 0.00
868 12 0.00
869 41 0.01
870 33 0.01
871 1 0.00
872 3 0.00
873 13 0.00
874 23 0.01
875 174 0.05
876 68 0.02
877 71 0.02
878 364 0.10
879 172 0.04
880 73 0.02
881 174 0.05
882 477 0.12
883 6 0.00
885 1 0.00
887 2 0.00
889 2 0.00
891 20 0.01
892 97 0.03
893 1 0.00
896 1 0.00
899 2 0.00
900 8 0.00
901 3 0.00
902 40 0.01
903 962 0.25
904 178 0.05
905 50 0.01
906 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAAT
CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGACGTAGTGCCCGCCCGTCCG
TGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
CCGAGGGTTACGAAGCAGGATCGGCAGCACACAGAGGGGGACCCGGTCGATCCTCGACTTACGCA
TCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGC
GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCT
GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
Found at i:1099803 original size:309 final size:309
Alignment explanation
Indices: 1099237--1099808 Score: 982
Period size: 309 Copynumber: 1.9 Consensus size: 309
1099227 AAGGGCCAGG
1099237 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCC
*
1099302 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
1099367 TAGCCATTAAAATGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
131 TAGCCATTAAAATGTCTAAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
* * * *
1099432 AGTTTTTACCTGAATTTTTTTGTGCATGCCAACGAAAATACAACAATGACGTCTAACAAGTTTGG
196 AGTTTTTACCTGAATGTTTCTGTGCATGCCAACAAAAATACAACAATCACGTCTAACAAGTTTGG
1099497 GGCACCATCGCCGGACGACATTGGGGTTTCGACGATCGGGGCAGCCAAT
261 GGCACCATCGCCGGACGACATTGGGGTTTCGACGATCGGGGCAGCCAAT
* * *
1099546 GGGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCC
1 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCC
1099611 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
66 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * *
1099676 TAGCCATTAAAGTGTCTGAAATGGGTACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
131 TAGCCATTAAAATGTCTAAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
* * ** *
1099741 AGTTTTTAGCTGAATGTTTCTGTGCATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
196 AGTTTTTACCTGAATGTTTCTGTGCATGCCAACAAAAATACAACAATCACGTCTAACAAGTTTGG
1099806 GGC
261 GGC
1099809 CAAAACTCTT
Statistics
Matches: 245, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
309 245 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (309 bp):
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAATGTCTAAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
AGTTTTTACCTGAATGTTTCTGTGCATGCCAACAAAAATACAACAATCACGTCTAACAAGTTTGG
GGCACCATCGCCGGACGACATTGGGGTTTCGACGATCGGGGCAGCCAAT
Found at i:1100282 original size:26 final size:26
Alignment explanation
Indices: 1100245--1100298 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
1100235 GGGTTGACTT
*
1100245 AGGATATGGAGTTCATTCCCAGTCTA
1 AGGATATAGAGTTCATTCCCAGTCTA
* *
1100271 AGGATATAGAGTTCTTTCCTAGTCTA
1 AGGATATAGAGTTCATTCCCAGTCTA
1100297 AG
1 AG
1100299 ATCGGACGGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (26 bp):
AGGATATAGAGTTCATTCCCAGTCTA
Found at i:1101192 original size:26 final size:26
Alignment explanation
Indices: 1101158--1101208 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1101148 TTGACTTAGG
*
1101158 CATATGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
1101184 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
1101209 GATCGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:1102481 original size:899 final size:895
Alignment explanation
Indices: 1099510--1103336 Score: 4800
Period size: 873 Copynumber: 4.3 Consensus size: 895
1099500 ACCATCGCCG
* * * *
1099510 GACGACATTGGGGTTTCGACGATCGGGGCAGCCAATGGGGGTGTGCGTACATGATGTGCGATGGG
1 GACGGCATTGGGGTTTCGACGATCGGGG-GGCC-A-GGGGGTGTGTGCACATGATGTGCGATGGG
*
1099575 TGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
63 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
1099640 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGTACA
128 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
1099705 CCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTCTGTGCATTC
193 CCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGC
* * *
1099770 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTAA
258 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
1099835 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGA
323 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * * * *
1099900 AAATTCATGTGAAGGATTCAGGGACTATTGCATAAATTTACAAGCCATAAAAATGGCATTGGCA-
388 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * ** *
1099964 CGTAGAAAA-ATGAAGATATGCCTAAACCCACCTATCAAGCTATCGATCCACGGCTTGTGCATCC
453 C--A-AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** * * *
1100028 CGTCTCTCTAGCCGGCTTAGTGCCCGCCCGCCCGCCTACTTGTTTCGTCGGTTGGCTTAGGCATA
515 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATA
* * * * * * *
1100093 CGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACA
580 C-GAGTTCATTCCCAGTCTAAGATCAGATCGAACAGAGGGTTGCGGCAGCAAGATCGACAGCACA
* * * * *
1100158 TAGAGGGGGACCCGGTCGATCCCCAGCTTGCACATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
644 CAGAGGGGGACCAGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * ** *
1100223 CGCTCGTTTCGTGGGTTGACTTAGG-ATATGGAGTTCATTCCCAGTCTAAGGATATAGAGTTCTT
709 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * * *
1100287 TCCTAGTCTAAGATCGGACGGGA-GCAAAGGTTGCGGTAGCACATGCTGCGCTTGGGCATGTGCT
774 TCCCAGTCTAAGATCGGACCGGATG--AGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * *
1100351 GGTGTCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGGGCATCCGGAGAACCTT
837 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT---C---G--T-CGGAGAACCTG
1100416 ACC
893 ACC
* * * *
1100419 GACGGCATTGGGGTTCCGACGATCGGGGTGGCC-GGGGGGGTGTACACACATGATGTGTGATGGG
1 GACGGCATTGGGGTTTCGACGATCGGGG-GGCCAGGGGGTGTGT--GCACATGATGTGCGATGGG
* * *
1100483 TGCGGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACACCCCCT
63 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
1100548 TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCCGTAGCCATTAAAGTGTCTGAAATTGGGACA
128 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
1100613 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGC
193 CCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGC
* * * ** *
1100677 TAAAAAAAATACAAGGATCACGTGTACCAAGTTTGGAGCCAAAACTCCTTTTGAAATAATTTTAA
258 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* ** * *
1100742 AAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGACTCGTCTTGCCATGA
323 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
1100807 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
388 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
1100872 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATTGATCCACGGCTTGCACATCCCG
453 -CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * *
1100937 TCTCCCTGGTCGGCATAGTGCCCGCCCGTCGGCCCACCCGCTCGTTTCGTCAGCTGGCTTAGGCA
517 TCTCTCTGGCCGGCGTAGTGCCCG-CC--C-GCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCA
* * * * * **
1101002 TACGGAGTTCATTCCCAGCCTAAGATCTGATTGTACCA-TGGGTTGCGATAGCAAGATCGACAGC
578 TAC-GAGTTCATTCCCAGTCTAAGATCAGATCG-AACAGAGGGTTGCGGCAGCAAGATCGACAGC
* * * * * *
1101066 ACGCAGA-GGGGACCCGATAGATCCCC-GACTTTCGCATCCCGCCCCTCTGGTCGGTTGAGCGCC
641 ACACAGAGGGGGACCAGATCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
1101129 CGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAACCATACGGAGT
705 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * ** *
1101194 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCATAACATGTTGGGCTCGGGCATGT
770 TCATTCCCAGTCTAAGATCGGACCGGA-TGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGT
* *
1101259 GCTGGTGCCGCATTTTTGTTCGTCGGGGCACCA---T-----CA---TCGAAGAACCTGACC
834 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* * * *
1101310 GGCGCCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGCT-TGTGCACATGATGTGCGATGGGT
1 GACGGCATTGGGGTTTCGACGATCG-GGGGGCCAGGGGG-TGTGTGCACATGATGTGCGATGGGT
* * *
1101374 ACTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCATT
64 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
1101439 AAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGATAC
129 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
** *
1101504 AC-TTTTCAAATGGTCGTAAAATCTTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGC
194 -CTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGC
1101568 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
258 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
1101633 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
323 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
1101698 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGTAC
388 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG--C
1101763 AT-AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
451 ATCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
1101827 GTCTCTTTGGCCGGTGTAGTGCCCGCCTGCCCGCCCGCTTGTTTCATCAGTTGGCTTAGGCATGA
516 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCAT-A
** * * * **
1101892 -GAGTTCATTCCCAGTCTAAGATTTGATCGAACAGAGGGTAGCGGCAGTAGGATCGACAGCACGT
580 CGAGTTCATTCCCAGTCTAAGATCAGATCGAACAGAGGGTTGCGGCAGCAAGATCGACAGCACAC
* * * *
1101956 AGAGGGTGACACAG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGTCCGGCTGAGCGCCTGCA
645 AGAGGGGGAC-CAGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * * * *
1102020 TGCTCGTTCCGTGGGTTGACTTAGCCGTACGTAGCTCATTCCCAGTCTATGCATACGGAGTTCAT
709 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * **
1102085 TCCCAGCCTAAGATCAGACTGGACTGACGGGTTACGGCAGCACATGCTGGGCAAGGGCATGTGCT
774 TCCCAGTCTAAGATCGGACCGGA-TGA-GGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * *
1102150 GGTGCCGTATTTTTCTTCTTCGGGGCACCATCGTTGGAGCATCGTCGGAGAACCTGACC
837 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* *
1102209 GACGGCTTTGGGGTTTCGACGATTAGGGGGGCCAGGGGGTGTGTGCACATGATGTGCGATGGGTG
1 GACGGCATTGGGGTTTCGACGA-TCGGGGGGCCAGGGGGTGTGTGCACATGATGTGCGATGGGTG
*
1102274 CTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
65 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
1102339 CAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACC
130 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACC
* * *
1102404 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTATGCATGCCA
195 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCA
* * * * * ***
1102469 ACAAAAATACAAGGATCACATCCACCAATTTTAGCATCAAAACT-C--CC---------------
260 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
1102516 --T-CC-AA----AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
325 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
1102573 CTTCACGTGAAGTCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
390 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-C
* *
1102638 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTC
454 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
1102703 TCTCTGGACGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
519 TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATAC-GA
* * * * *
1102768 GTTCATTCCCAGTCTAAGATCAGA-CAAGACTGAGGGTTGGGGCAGCAAGAT-TAGCAGCATACA
583 GTTCATTCCCAGTCTAAGATCAGATCGA-ACAGAGGGTTGCGGCAGCAAGATCGA-CAGCACACA
* * * * * * *
1102831 GAGGGGGACCTGACCGATCCCCATCTTACGCATCCCGCCCCTCTGGCCGACTGACCGCACGCACG
646 GAGGGGGACCAGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * *
1102896 CTCGTTTCTTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGCCTAAGCGTACGGAGTTCATTC
711 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * * *
1102961 TCAGTCTAAGATCGGACCGGATCGAGGGTTACGACAGCACATACTGGGCTCGGGCATTTGCTGGT
776 CCAGTCTAAGATCGGACCGGAT-GAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* ** * * * * * *
1103026 GCCACATTTTTCTTTATCGGGG-AACATCGCCGAAGCATCGCCGGAGAACTTAACC
840 GCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* * * * ** * * *
1103081 GACCGCAATGGGG-TTCTGGCGATTGGGGGG-GTGTGGGGGGCGTTCGTACATGATGTGCGATGG
1 GACGGCATTGGGGTTTC-GACGATCGGGGGGCCAG-GGGGTGTG-T-GCACATGATGTGCGATGG
*
1103144 GTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
62 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
1103209 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGCAC
127 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
1103274 A-CTTTTATCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAAT-TGTTTTGTGCA
192 ACCTTTT-TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGT-TTTTGTGCA
1103337 CATGATTCAT
Statistics
Matches: 2563, Mismatches: 300, Indels: 146
0.85 0.10 0.05
Matches are distributed among these distances:
870 1 0.00
871 19 0.01
872 48 0.02
873 480 0.19
874 172 0.07
877 2 0.00
878 2 0.00
879 1 0.00
885 3 0.00
886 52 0.02
887 155 0.06
888 62 0.02
890 184 0.07
891 312 0.12
892 12 0.00
893 3 0.00
896 4 0.00
898 3 0.00
899 282 0.11
900 2 0.00
903 2 0.00
906 12 0.00
907 256 0.10
908 191 0.07
909 31 0.01
910 76 0.03
911 194 0.08
912 1 0.00
913 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (895 bp):
GACGGCATTGGGGTTTCGACGATCGGGGGGCCAGGGGGTGTGTGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACCT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAA
AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCAA
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGAGTT
CATTCCCAGTCTAAGATCAGATCGAACAGAGGGTTGCGGCAGCAAGATCGACAGCACACAGAGGG
GGACCAGATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
CTAAGATCGGACCGGATGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
Found at i:1102957 original size:26 final size:26
Alignment explanation
Indices: 1102921--1102970 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1102911 AACTTAGGCA
1102921 TACGGAGTTCATTCCCAGCCTAAGCG
1 TACGGAGTTCATTCCCAGCCTAAGCG
* *
1102947 TACGGAGTTCATTCTCAGTCTAAG
1 TACGGAGTTCATTCCCAGCCTAAG
1102971 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGCCTAAGCG
Found at i:1107529 original size:26 final size:26
Alignment explanation
Indices: 1107500--1107552 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1107490 GTTGACTTAG
1107500 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1107526 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1107552 G
1 G
1107553 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1108425 original size:26 final size:26
Alignment explanation
Indices: 1108395--1108447 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1108385 GTTGACTTAG
* *
1108395 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
1108421 GCATACGAAGTTCATTACCAGTCTAA
1 GCATACGAAGTTCATTACCAGTCTAA
1108447 G
1 G
1108448 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTAA
Found at i:1108730 original size:895 final size:893
Alignment explanation
Indices: 1106623--1130428 Score: 24923
Period size: 902 Copynumber: 26.6 Consensus size: 893
1106613 TAGCTTAGGT
* * * * * * ** *
1106623 ATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAGTAGATGCCCGACT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * *** *
1106688 TGGGCATGTGCTGGCGTCACATTTTTCTTCGTCGGGGCAAGTTCG-CTGGAGCATCGTCGGAGAA
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAA
* * *
1106752 CCTGACC-AGCGGCATCGGGGTTCCGGCGGTCGGGGGGGCCAAGTGGGGGTGTGCGCACATGATG
130 CCTGACCGA-CGGCATTGGGGTTCCGACGATC-GGGGGGCC--G-GGGGGTGTGCGCACATGATG
** * *
1106816 TGCGATGGGCACTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTTGAGAACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
1106881 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTGGCCATTAAACTGTCTGAA
255 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
1106946 ATGGGGACACTTTTTTCAAATTGTCACAAAATCTTCTACACTTAC-AGTTTTTAGGTGAATTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-CGAGTTTTTAGCTGAATTTTT
* * *
1107010 TTGTGCATGCCAACAAAAATTCAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAA
384 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
1107075 AAAATTTTAAAAAAT-CTCGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCG
449 AAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
**
1107139 TCTTGCCATGAAACTTCACGTGAAGAATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
1107204 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
578 GGCATTGG--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
1107269 TGCGCATCCCGTCCCTC-GGCCGACGTAGTGCGCGCCAGCCCGCCCGCCCGCTCGTTTTGTCGGT
641 TGCGCATCCCGTCTCTCTGGCCGACGTAGT--------GCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * *
1107333 TGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCA-GACCAAACAGAGGGTTGTGGCAGTA
698 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCA
* * * * *
1107397 GGATCGGTAGCACGCAGAGAGGGACCCGGCCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCTG
763 GGATCGATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
1107462 GCTGAGAGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
828 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1107527 C
893 C
* * * * * * *
1107528 ATATGGAGTTCATTCCTAGTCTAAGATCAGATCAGACCGAAGGTTGCGGCAGCACATGCTGGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC-
* ** * **
1107593 TC-GTCATGCACTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAA
65 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * * * ** * * *
1107657 CCTGACTGGCGACATTGGGGTTTCGACGATCGGGGGGGTTGGGGGCTGTGCACACATGATGTGCA
130 CCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* **
1107722 ATGGGTGCTGGTATTTGGCCCTTATATTCTCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
1107787 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
1107852 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
1107917 CATGCCAACATAAATACAAGGACCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
1107982 TTTAAAAAATCCTGAACCGCAAGAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
454 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
1108047 CATGAAACTTCGCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
1108112 GGTTCATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
584 GG--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
1108177 TCCCGTCTCTCTGGCCGGCGTAGTACCCGCCCACCCGCTCGTTTCCTCGGTTGGCTTAGGCATAC
647 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * ** *
1108242 GAAGTTCATTCCCAGTCTATGATTAGGA-CAGATCGAGGGTTGTGGCAGCAAAATCGATAGCACA
712 GGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCACG
* * * * * *
1108306 CAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCACCCCTCTAGCCGGTTGAGCGTCCGCG
777 CAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
1108371 CGCACGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAGC
842 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
1108423 ATACGAAGTTCATTACCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
** * *
1108488 -GGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGTGCACCATCGTCAGAGCATCGCCGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * * * * *
1108552 CTAACCGATGGCATTGCGATTCCGACGATCGGGCGGGCCGGGGGGGTGTGCACCCATGATGTGCG
131 CTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCC-GGGGGGTGTGCGCACATGATGTGCG
*
1108617 ATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
1108682 CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
1108747 GGACACTTTTTTCGAATGTTCACAGAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
1108812 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
1108877 TTTAAAAAAT-CTCGAACCATAAAAGGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC-T-
454 TTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
1108939 ---TG---C--CA--TGAAGGCCTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
1108994 TGGCACGCAGAAAGAAT-AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
583 TGGCA--TAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
1109058 CATCCCATCTCTCTGGCC-AGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGG
645 CATCCCGTCTCTCTGGCCGA-CGTAGT----GCCCGCCCG----CCCGCTCGTTTCGTCGGTTGG
* * * * * * ***
1109122 CTTAGGCATATGGAGTTTATTCGCAGTCAAAGATCA-GACC-GAACTGAGGGTTACAGCAGCAGG
701 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGACCAG-ACCGAGGGTTGTGGCAGCAGG
* *** * * *
1109185 ATCGATAGCACGCAAAGGGGGACCCAACCAATCCCCGACTTGCTCATCCCGCCCCTCTGGCCGGC
765 ATCGATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
1109250 TGAGTGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCTGTCTAAG-
830 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
1109313 AT-C---G----------G-----G-T-----CGGACCGAGGGTTACGGCAGCACATACTAGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * *
1109353 CGGGCATGTGCTGGTACCTCATTTTGCTTCATCGGGGCACCATCG-CGGGAGCATCGTCGAAGAA
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAA
* * *
1109417 CCTGACCGACGGTATTGGGGTTCCGATGATTGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
130 CCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGC
* *
1109482 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCTCA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
1109547 CCCCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
1109612 GGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTTGGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
1109677 GCATG-CAACAAAAATAAAAGGATCACGTGTAGCAATTTTGGGGCAAAAACTCCTTCCGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
1109741 TTTTAAAAAAT-CTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
453 TTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
1109805 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGACTTTACAAGCCGTAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
1109870 TTGGCAGACAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGCTCCACGTCTTGCC
582 TTGGC--ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
1109935 CATCCCGTCTCTCTGGCCGGCGTAGTGCTCGATCGCCCGCCTGTCCGCTCGTTTCGTCGGTTGGC
645 CATCCCGTCTCTCTGGCCGACGTAGTGC-C---CGCCCG-C---CCGCTCGTTTCGTCGGTTGGC
* * * * * * *
1110000 TTAGGCATACGGAGTTTATTTCCAATCTAAGATCA-GACTAGACCGAGGGTTATGGTAGC---AT
702 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGGAT
** * * * *
1110061 -G-T-------AGAGGGGGACCCAATTGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCAGCTG
767 CGATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
1110117 AGCACCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGGC
832 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * ** * ** * *
1110179 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTTGACTGAGGGTTGCAACAGCACCTGCTAGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * *
1110244 CGAGCATGTGCTGGTGCCACTTTTTTCTTCATCGGGGCACCATCATCGGAGCATCGTCGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * * *
1110309 TTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTACGA
131 CTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
1110374 TGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
1110439 CCCTTAAAGAGCATTTGAGAATTTATAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTAAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
1110503 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTACCTAAATTTTTTTTTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
1110568 ATGCCAA-AAAATATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAACTGCTTCC-AAAAAAT
390 ATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
**
1110631 TTTAAAAAAATCGC-GAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 TTT-AAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
1110695 GCCATGAAACTTCATC-TGAAGGCTTAAGGGACCATTGAATGAACTTACAAGCCATAAAAATGAC
517 GCCATGAAACTTCA-CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * ** *
1110759 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACCATACCGATCCACGATTTAC
581 ATTGGCA--TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
1110824 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCTCGTTTGGTCGGTTGGCTTAGGCA
644 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * **
1110889 TACGGAGTTCATTCCCAATATAAGATCA-GACTAGACCAAGGGTTGTGGCAGCATGATTGGCAGC
709 TACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGC
* * * * * *
1110953 ACACAGAGGGGGACCCTGTCGATCCCCGGCTTGCACATCCCGCCCCTCTGGGCGGCTGACCGCCT
774 ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
1111018 GCACGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGCCTAAGC
839 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * * *
1111073 ATAC-AGAGTTCATTCCCAGTCTAAGATCGAACCGAATCAAGGGTTTCAGCAGCACATGCTAGGC
1 ATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * *
1111137 TCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGAAGAA
65 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * * * * *
1111202 CCTAACCGGCAGCATTGGGGTTTCGACAATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGA
130 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
1111267 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCAAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
1111331 CCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
1111396 TACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCAAGTTCTTAGCTGAATTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
1111461 ATGCCAA-AAAAATACAACGATGACGTCTACCAAGTTTAGGGCCAAAACACCTTCCAAAAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
*** **
1111525 TTAAAAAAAT-CTCGAATTTTAAAAAATGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
455 TT-AAAAAATCCT-GAACCGT-AAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
1111589 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
1111654 ATTGGTACATAGAAATATGAAGATGTGCCTAAACCCACCTCCCACCCTATCGATCCAAGGCTTGC
581 ATTGG--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
1111719 GCATCCCGTCTCTCTAGCCGGCGTAGAGCCCGCCCGCCCGCTCTTTTCGTCAGTTGGCTTAGACA
644 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *** * *
1111784 TATGGAGTTCATTCCCAGTCTAAGA-TCGGATC-GAACTGAGGGTTACAGTAGCAGAATC-AGTA
709 TACGGAGTTCATTCCCAGTCTAAGATTAGGACCAG-ACCGAGGGTTGTGGCAGCAGGATCGA-TA
* * * * * *
1111846 GCATGCAGAGGGAGACCCGGTTGATCCCCGGCTTTCGCATCCCACCCCTCTGGCCGGCTGAGTGC
772 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
1111911 CCACACGCTTGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCCAAGC
837 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * ** *
1111967 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGCAGCAGCACATGCTGGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* ** * * *
1112032 CGGGCATGGGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCAGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* *** * * *
1112097 TTGACCGGTAGCATTGGGGTTTCGGCGATCGAGGGGGCTGTGGGGGGTGTGCGCACATGATGTGC
131 CTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGC--CGGGGGGTGTGCGCACATGATGTGC
* * *
1112162 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
1112227 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
1112292 GGGACACTTTTTTC-AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
1112356 GCATGGCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
1112421 TTTTAAAAAATCCCGAATCC-TAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACTAGTCGTCTT
453 TTTTAAAAAATCCTGAA-CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
1112485 GCCTTGAAACTTCACGTGAAGGCTTAAAGGACCATTGTACGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
1112550 TTGTCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCCTGCG
582 TTGGCA--TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
1112615 CTTCCCGTCTCTCTGGCTGACCTAGTGCCCGCCCGCCTACCTACCTACTCATTTCGTCAGTTGGC
645 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-----C--CC-GCTCGTTTCGTCGGTTGGC
* * *
1112680 TTAGGCATATGGAGTTCATTCCCAGTCTAAGA-TAGGACTAGACCGAGGGTTGTGGCAGTAGGAT
702 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGGAT
* * * * * * **
1112744 TGGTAGCACGCAGAGGGTGACCCGGTTGATCCTCGGCTTGCGCATCCC-CCCCTTTGGTTGGCTG
767 CGATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * ** *
1112808 AGCGCCCGTACGTTTGTTTCACGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGC
832 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
*
1112870 ATAC-AGAGTTCATTCCCA-TCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGC
1 ATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * *
1112933 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATTGGAGCATCGCTGGAGAA
65 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * *
1112998 CCTAACCGGCGGCTTTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-GTTGCGCACATGATGTGC
130 CCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTG-TGCGCACATGATGTGC
*
1113062 GATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
1113127 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGTCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
1113192 GGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
1113257 GCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTCGGGGCCAAAACTCCTTCTGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
1113322 ATTTAAAAAAT-CTCGAACCGTAAAAAATTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCTT
453 TTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * ** *
1113386 GCCATGAAACTTCACTTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGTGATAAAAATGGCT
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
1113451 TTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCG
582 TTGGCAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
1113516 CATCCCGCCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCTTGTTTCGTCAGTTGGTTTAGGCAT
645 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * * **
1113581 ACAGAGTTCATTCCCAGTCTAAGATT-GGACCGGACTGAGGGTTGCGGTAGTAGGATAGGCAGCA
710 ACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCA
* * * * * *
1113645 CGTAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCTGCCCCTCTGGTCGGCTTAGCGCCCG
775 CGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
1113710 TAC-CATCATTTTGTGGGTTGAC-T-----TA--G-G--------CA---T-A-C
840 CACGC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *
1113742 AT----AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * *
1113803 CGAGCATG-GCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGCCAGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* *
1113867 CTGACCGGC-GCATTGGGGTTCCG-CGATC-GGGGGCCGGTGGGTGTGCGCACATGATGTGCGAT
131 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
*
1113929 GGGTGCTAGTACTTGGCCCTTATATT-G-CCCCTATCCCCTCATCAAACCTC-AGAACTCACACG
196 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCCTCATCAAACCTCGAGAACTCACAC-
*
1113991 CGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
1114055 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
1114120 CATGCCAA-AAAAAGTAC-AGGATCACGTCTACC-AGTTTTGGGGCCAAAACT-CTTTCGAAAAA
389 CATGCCAACAAAAA-TACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAAAAA
*
1114181 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
**
1114246 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
1114311 TTGGCATGTAGAAATATGAAGATGTG-CTGAAACCCACCTACCACCCTATCGATCCACTGCTTGA
582 TTGGCA--TAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
1114375 GCATCTCGCCTCTCTGGCCGACGTAGAGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTA
644 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
1114440 GGCATACGGAGTTCATTCCCAATCTAAGATCT--GATCGGATCGAGGGTTGTGGCAGCAGGATTG
705 GGCATACGGAGTTCATTCCCAGTCTAAGAT-TAGGACCAGACCGAGGGTTGTGGCAGCAGGATCG
* * * * * *
1114503 ACAGCACGCAGAGGGGGACCTGGTCGATCCCTGACTTGCGCATCCCGCCCCTTTGG-CAGCTGAG
769 ATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
1114567 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAG--T--G-
834 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* ** *
1114622 -T---AAG---------A-TC--AGAT-----CGGACCGAGGGTTACGTTAGCACATGCTGTGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* *
1114666 CGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * * * *
1114731 CTGACCGATGGTATTGGGGTTCTGGCAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
131 CTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
1114796 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCACA-C
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
1114860 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
1114925 GACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
1114990 ATGCCAAAAAAAATACAAGGATGACGTCTACCAAGTTTTGGACCAAAACTCCTTCCAAAAAAAAT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAAAT
** * * * *
1115055 TTTAAAAAATCCCAAACCATAAAAAGTTT-GAAAATCGTGAAGAATAGAAAACGAGTCATCTTGC
454 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
1115119 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
1115184 GGCACACAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
584 GG--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
1115249 TCCTGTCTCAT-TGGCCGACGTAGTGCCCGCCCATCCACCCGCCCGCTCATTCCGTCGGTTGGCT
647 TCCCGTCTC-TCTGGCCGACGTAGTGCCCG--------CCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * ** * *
1115313 TAGGCATTCGGAGTTCATTCCCAGTCTAAGA-TCGGA-CTGAACTAAGGGTTGTAGCAGTAGGAT
703 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGACCAG-ACCGAGGGTTGTGGCAGCAGGAT
* * ** *
1115376 CGCA-AGCACGCAGAGGGGGACTCGGTCGATCCCCGACTTGCGCATCCTACCCCTCTGGCCGACT
767 CG-ATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
1115440 GAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGAAGTTCATTCCTAGTC-AAGC
831 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * ** * * *
1115502 ATATGAAGTTCATTCCCAGTCTAAGATTGGATTGGACCGAGGGTTACGCCAGCGCATGCTGGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* ** ** * *
1115567 CGGGCAAGTGCTGGTGTTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCAGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* *
1115632 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCG
131 CTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTGCG
*
1115697 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCACA-
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
1115761 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
1115826 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGATTTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
1115891 CATGACAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * ** * *
1115956 TTTAAAAAATCCCGAACC-TCAAAAAATTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTG
454 TTTAAAAAATCCTGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
1116020 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
1116085 TGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
583 TGGCAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * **
1116150 GTCCCGTCTCTCT-GCTCGACGTAGTGCCCACCCGTCTGCCCGCCCGCTCGTTTTGTCATTTGGC
646 ATCCCGTCTCTCTGGC-CGACGTAGTG-----CC--C-GCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
1116214 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GATCAGATCAAGGGTTGCGGCAGCAGGAT
702 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGGAT
** * ** * * * * *
1116278 CGGCAGCATGCAGAGGGGGACCCGACCGATCCTCGGGTTACGCATCCCGCCCCTGTGGTCGGCTG
767 CGATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
1116343 AGCGCCCACTCGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CC---C--A--
832 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * *
1116397 AT-CTAAG---ATT----G-----GA----A-CGGACTGAGGGTTGCGACAGCACATGTTGGGCA
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * *
1116444 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCCCCATCATCGGAGCATCACTGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* ** * * *
1116509 CCGACCGGTGGCATTGGGGTTCCGACGATCGCGGGGCCGGGGGGTGTGCGCACATGATTTGTGAT
131 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* *
1116574 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCGAACCTCGAGAACTCACA-CC
196 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
1116638 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
261 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* **
1116703 ACACTTTTTTCAAATGGTCACAACATCTTGTACACTTCGAGTTTTTATTTGAATTTTTTTGTGCA
326 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
1116768 TGCCAACAAAAATACAAGGATCATGTCTACCGAGTTTGGGGCCAAAACTCGTTCC-AAAAAAGTT
391 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
** * *
1116832 TAAAAAAT-CTCGAACCACAAAAAGTTTCAAAAATCTTGAAAAATAAAAAACGAGTCGTCTTGCC
456 TAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
1116896 ATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
1116961 GCATGCATAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGTAT
585 GCAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
1117026 CCCATCCCTCTGGCCGGA-GTAGTGCCCGCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCA
648 CCCGTCTCTCTGGCC-GACGTAGTG--C-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
** * * * ** * *
1117090 TACGGAGTTCATTCGTAGTCTAAGA-TCGGATC-GAACCAAGGGTTACGGTAGCAGGATCGGTAG
709 TACGGAGTTCATTCCCAGTCTAAGATTAGGACCAG-ACCGAGGGTTGTGGCAGCAGGATCGATAG
* * * * * * * *
1117153 CACGCAGAGGGGGACCC-GACTGATCCTCGACTTACGCATCCCACCCCTCTAGCCGACTGAGCAC
773 CACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
1117217 CAGCACGCTCGTTTTGAGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
837 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
** * ** * *
1117274 ATACGGGGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCGACAGCACATGCTAGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * ** *
1117339 CGGGCACGTGCTGGGGCCGTATTTTTCTTCGTCGGGGTACCATCACCGGAGCATCGTCGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * * * * *
1117404 CTGACTGACGGCATTGGGGTTTCGATGATTGGGGCGCCGGTGGGGGGTGTGCGCACATGATGTGT
131 CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC---GGGGGGTGTGCGCACATGATGTGC
* *
1117469 GATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
1117534 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCCAGTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
1117599 GGGACACTTTTTTCAAACGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTA
323 GGGACACTTTTTTCAAA-TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
1117664 TGCATGCCAACAAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCATAACTCCTTCCCAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
1117729 ATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
452 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
1117794 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
1117859 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTACG
582 TTGGCAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
1117924 CATCCTGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
645 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * ** **
1117989 ACGGAGTTCATTCCCAGCCTAAGATCA-GACCGGATTGAGGGTTGCAGCAGCAGGATCG-TCAGC
710 ACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGGATCGAT-AGC
* * ** * * *
1118052 ACGCCGAGGGTGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCTTCTGGCCGGCTGAACGCCC
774 ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* ** * *
1118117 GCACACTTATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
839 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* ** * *
1118172 ATACGGAGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGTGGCAGCACATACTGGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * *
1118237 CGGGCATGTGTTGGTGCCGCATTTTTCTTCG-CTAGGGCACCATCGTCGGAGCATTGCCGGAGAA
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAA
*
1118301 CCTGACCGACGGCATTGGGGTTCCTACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
130 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
1118366 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
1118431 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
1118496 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGGTGAATTCTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
1118561 ATGCCAACAAAAATACAAGCATCACGTCTACCAAGTTTGGTGCCAAAACGCCTTCCGTAGAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* ** * *
1118626 TTAAAAAATCC-AAACCGT-AAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCC
455 TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
1118689 ATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * * * *
1118754 GCATGCAAAAAGATGAACATTTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCACAC
585 GCAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
1118819 CCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCCGGCCGCCTACCCCTTCGTTTTGTCGGTTGGCTT
648 CCCGTCTCTCTGGCCGA-CGTAGTGCCCG--C--CCG-C--CCGC-TCGTTTCGTCGGTTGGCTT
* * * * * * * ** * *
1118883 AGGTATACGGAGATCATTGCCAATCTAAGA-TCGGACCAGACCAAGAGTCATGGTAGTAGGATCG
704 AGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGGATCG
* * * * * * *
1118947 ACAGCACGCAGAGGGGGACCCAGCCGATCCCTGACTTGCGCATCTCGCCCCTCTGGTCGGCTGAG
769 ATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * *
1119012 TGCCCGCATGCTAGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCTAGTTTAAGC
834 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
1119072 ATACGGAGTTCATTCCCAGTCTAGGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * **
1119137 CGGGCATGTGCTGGTGCCACATTTTTTTTTGTCGAGGCACCATCGCCGGAGCATCAACGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * * * *
1119202 CTGACCGGCGGCATTGGGGTTTC-AGCAATCGGGGGTCCGGGGGGTGTGCGCACATGATGTGCGC
131 CTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
1119266 TGGGTGCTGGTACTTGGCCCTTAAATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
1119330 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG-AATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
1119394 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
1119459 GTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCAAAAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* ** ** *
1119524 TTAAAAAATTCTGAACCGTAAAAAGTTTTGAAAATTATGAAAAATAGAAAATGAGTCGTCTTGCC
455 TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
1119589 ATGAAACTTCACGTGCAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
1119654 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
585 G--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * ** ** *
1119719 CCCGCCTCTCTAGCCGACGTAGTGCCCGTCCGCCTGCCCGAC-CGCTTGTTTTCATTTGGTTTAG
648 CCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CC-GCCCG-CTCG-TT-TCGTCGGTTGGCTTAG
* * * * * * * * **
1119783 TCATACAGAGTTCATTCCTAGTCTATGA-TAGGACCAGA-CGAGGGTTATGGTAGTAGGTTCGGC
706 GCATACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGGATCGAT
* * * * *
1119846 AGCACGCAGAGGGGGACCCAGCCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTG
771 AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
1119911 CCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAAGC
836 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * **
1119969 ATACGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * **
1120034 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCAGAGCATCATCGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * * * *
1120099 TTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGCGCGCACATGATGTGCGA
131 CTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
1120164 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCAAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
1120229 CCCTTAAAGAGCATTTTAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
1120294 GACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
1120359 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCTAAAACTCCTTCCGAAAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * *
1120424 TTAAAAAATCCTAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
455 TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
1120489 ATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAGTTTACAAGCCATACGAAA-GGCATT
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATT
* * *
1120553 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGACTTACGCA
584 GGCAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * ** * *
1120618 TCCCATCTCTCTGGTCGGTGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTCATTTTGTCTGTTG
647 TCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCG----CTCG----TTTCGTCGGTTG
** ** ** * * ** *
1120683 GCTTAGGCATACAAAGTTCATTCATAGTCTAAGATT-GGACGGGACCGAAGATTACGGCAGCAGA
700 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGG
* * * * *
1120747 ATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCACCCCTC-GGCCGAC
765 ATCGATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
1120811 TGAGCGCCCGCATGCTAGTTTCGTGGGTGGACTTAGGCATACGGAGTTCATTCCCAGTC-AAGGC
830 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-GC
* * * * * * *
1120875 ATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGATTGCGACAGCACATGTTGGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * *
1120940 CAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGTGCATCACCGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * *
1121005 CTGACTGGA-GGCATTGGGGTTCC-AGCGATCGGGGGGCTGGGGGGTGTGCACACATGATGTGCG
131 CTGAC-CGACGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* **
1121068 ATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCAT-ATCAAACCTCGAGAACTCATG
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC-TCATCAAACCTCGAGAACTCACA
* * * *
1121132 CTCCCTTAAAGAGCATTTGAGATTTTATATGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
1121197 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
1121262 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTGGTAGACGTGAT
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC----T---CCT--T
* ** * ** *
1121327 CCTTGTATTTTTGTTGGCATGTCATGTCTGCCAAGTTTGGGGCCAAAACTCCT--TTCGAAAAAA
444 CC--G-A-----------A----A--------AAATTT----TAAAAAATCCTGAACCGTAAAAA
* * * *
1121390 TTTTAAAAAATCTCGAGCCCTAAAAAGTTTCAAAAATCGTGAAAAGTAGACAAGGAGTCATCTTG
479 GTTTCAAAAA--TC--G---T-----G----AAAAA---T----AG-A-A-AACGAGTCGTCTTG
*
1121455 CCATGAACCTTCACGTGAAGGCTT-AGGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 CCATGAAACTTCACGTGAAGGCTTAAGGG-ACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
1121519 TTGGCACGTAGAAATATGAAGATGTGCTTAAACCCACCTACCACCTTATCGATCCATGGCTTGCG
582 TTGGCA--TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
1121584 CATCTCGCCTCTCTGGCCGACGTAGTACCCGCCCGCCCACCTGCTCATTTCATCGGTTGGCTTAG
645 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CC-GCTCGTTTCGTCGGTTGGCTTAG
** * * ** * *
1121649 GCATACGGAGTTCATTCATAGTCTAAGATCA-GACCAAACCGAGGGTTACGGTAGCAGGATCGGT
706 GCATACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGGATCGAT
* ** * * *
1121713 AGCACGCAGAGGGGGACCC-GACAGATCCTTGGCTTGCGCATCTCGCCCCTTTGACCGGCTGAGC
771 AGCACGCAGAGGGGGACCCGGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
1121777 CCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT--C---CT-AG-
835 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
*
1121829 -T-CTAAG---ATT----G-----GAT-----CGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * *
1121875 CGGGCATGTGTTGGTGCCGCATTTTCCTTTG-CTGGGGCACTATCATCGGAGCATCGCCGGAGAA
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * * * *
1121939 CCTGACCGGCGGCATTAGGGTTGCGGCGAT-----GG--GGGGGGTGTGCGCACATGATGTGTGA
130 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* ** **
1121997 TGGATGCTTTTACTTGGCCCTTATATTGGCCCTTTATCCCTCATCAAACCTCGAGAACTCACA-C
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* ****** * * ** * * *
1122061 CCTTTATCCCTTATATTG-GCCCTTATATTGGCCCTTAAAG-TGCCAGTAGCCAGTAGCCAGTAG
260 CCCTTAAAGAGCAT-TTGAG--ATTTTACAGG---TT--TGCTGCCAGTAGCCATTA--AAGT-G
* * **** ** *
1122124 CCAGTACACATTGAGTTTTTAGCTGTTTTGTGC--ATGG-CAACAAAAATACAAGGATCACGTCT
314 TCTG-A-A-A-TG-G-GGACA-CT-TTTT-T-CAAATGGTC-AC-AAAAT-CTTGTA-CAC-T-T
* ** * ** ** * *** *** ** * *
1122186 ACCAAGTTTGGGATCAAAACTCCTTTCGAAAAAAT-TTTA-AAAAAT-C-CCGAAC-CG-CTA-A
363 --CGAGTTT-TTAGCTGAA-TTTTTTTG--TGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * ** * * * *
1122244 AAGTTT--TG--AAAA-T-CGT--G-AAAGA-TAGAAAACGAGTCACCTTG--CCAT-GAAA-CT
422 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA--AAT--CC-TGAACCGTAAAAAGTT
*** ** * * * * * *** ****
1122295 TC----AT-GTGAAGGCTTA-AGGGACCA-TTGT-GTG-AATTTAAAAGCCATAAAAATGG--TA
482 TCAAAAATCGTGAA-AAATAGA-AAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAA-GGCTTA
** * * *** ***** **** * ** ** *
1122349 TTGG-CACATAGAAATATGAA--GATGTGCC-TAAACCCACCTACCACCCTATCAAT-CCACAGC
543 AGGGAC-CATTG---TATGAATTTACAAGCCATAAAAATGGC-ATTGGCATAGAAATATGA-AGA
* * * * ** ** ** *
1122409 T-TGCGC--ATCCCGTCTCT-CTAGCCGGT-GTAGTGCC-C-GCCCGC-CCGCCCGCCTGCT-TG
602 TGTGC-CTAAACCC-AC-CTACCACCCTATCG-A-T-CCACGGCTTGCGCATCCCGTCT-CTCTG
** * * * * ** * * * * *
1122465 TTTCGTCGGTTG-GCTTACGCATACG-GAGTTCATTCCCAGTCTAAGAG-TGGAC--CGG-A-CC
660 -GCCGAC-GTAGTGC--CCGC--CCGCCCGCTCGTT-TC-GTC---G-GTTGG-CTTAGGCATAC
* * * * * ** ** *
1122523 GAGGGTTGAGGT---AG-C-AGGA-T-CGA-CAGCACATAGAGG--G-GG-A-CTCGATCGAT-C
712 G-GAGTTCA-TTCCCAGTCTAAGATTAGGACCAG-ACCGAG-GGTTGTGGCAGCAGGATCGATAG
* * **** * ** * * * **
1122574 CCCGGCTTGCTCA-TCCCACCC-CTC--TGGCCGGC-TGAGCA-CCCGCACGCTCATTTCGTGGG
773 CAC-GC-AG---AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGC-C-C-C-TCTGGCCGG
* **** * ** * ** ** * * *
1122633 TTGA-TTTACGTATACG-GAG-TTCATTCGCAGTC-TAAGCATACAGAGTTCATTCCCAGTCTAA
829 CTGAGCGCCCG--CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1122694 G-
892 GC
* * ** *
1122695 AT-C--AG---------A--C-----T-GGATC--A---AGGGTTGGGGCAGCATTTGCTGGGTT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * *
1122735 CGGGCATGCGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCG-CTGGAACATCGTCGGAGAA
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCCGGAGAA
* * *
1122799 CCTGACCGATGGCATTGGGGTTCCGACGATTAGGGGGGCCGGGGGGTGTGCGCAAATGATGTGCG
130 CCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
1122864 ATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
1122929 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-GCAATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
1122993 GGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * ** * *
1123058 CATGCCAAAAAAAATACAAGGATCATGTCTACAAAGTTAAGGGCCAAAACTCCATCCAAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
1123123 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
454 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
1123188 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
1123253 GGCATGTAGAAATATGAATATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCA
584 GGCA--TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * **
1123318 TCCCGTCTCTCTGGCCGAAGTAGTGCCCGTCCGATCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
647 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** ** * * *
1123383 GGAGTTCATTCCCAGTCTAAGATCA-GACCAGATTGAGGGTTGCAGCAGTAAGATC-AGTAGCAT
712 GGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGGATCGA-TAGCAC
* * * * **
1123446 GCAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGTCGGCTGAGCGCCCAT
776 GCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
1123511 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
841 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * * * *
1123564 ATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGCAGCAACACAT-CTGGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * *
1123628 TGGGCATGTGCTGGTGCCATC-TTTTTCTTCGTTGGGG---CA----C----CATCGCCGGAGAA
66 CGGGCATGTGCTGGTGCC-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * * * *
1123681 CCTGACCAACGACATTGGGGTTTCGACGAT-GAGGGTGCCGGAGGTGTGTGCGCACATGATGTGC
130 CCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGG-GGGGTGTGCGCACATGATGTGC
* *
1123745 GATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
1123810 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTTTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
1123875 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTATTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** * **
1123940 GCATGGCATA-AAAAATACAAGGATCGTGTCTACCAAGATAAGGGCCAAAACTCCTTCCGAAAAA
388 GCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** * * * * * *
1124004 ATTTTAAAAAATTTTGAATCGCAAAAAGTTTCCAAAATCTTGAAAAATAAAAAACGAGTCATCTT
452 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
1124069 GCCTTGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
1124134 TTGCCATGTAGAAATATGATGATGTGCCTAAACCCACCTGCCACCCTATCGATCCTCGGCTTGTG
582 TTGGCA--TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * *
1124199 CATCTCGTCACTCTGGCCGACATTGTGCCTGCCCGCCCGCCCGCTCATTCGTCGGTTGGCTTAGG
645 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCG-T--TTCGTCGGTTGGCTTAGG
* * * ** * * **
1124264 CATACAGAGTTCATTCCCAGTCTGAGATCA-GACTGGACTGAAGGTTGTGGCAGCAGGATCGGCA
707 CATACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGGATCGATA
* * * *
1124328 GCACACAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGT
772 GCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
1124393 CCGTACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
837 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * *
1124450 ATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCACATGCTGGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * ** *
1124515 TGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
** * * *
1124580 CTGACCGACGGCATTAAGATTCCGATGATCGGGGGGGCCGGGGGGGATGGGCGCACATGATGTGC
131 CTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGG-TGTGCGCACATGATGTGC
* ** *
1124645 GATGGATGCTGGTACTTGGCCCTTATGCTGGCCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
193 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1124710 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
257 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
**
1124775 GGGGACACTTTTTTCAAATGGTCACAAAAAATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
1124840 TGCATGCCAACCAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAGCACCTTCTGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
1124905 ATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCT
452 ATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
1124969 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGC
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
1125034 AATGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATACACAGCTTGC
581 ATTGGCAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
1125099 GCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCACCTGTCCGTCCGCTCGTTTCGTCGGTTGG
644 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CC-G--C--CCGCTCGTTTCGTCGGTTGG
* * * * ** *
1125164 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCAAGGGTTGCAGTAGCAGGA
701 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGGA
* * * * * ** * * *
1125228 TTG-TCAGCATGCAGAGTGAGATCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGAC
766 TCGAT-AGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
1125292 TGAGCACCCGCACACTCGTTGCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-
830 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* *
1125355 AT-C--AG---------A--C------C--A---GACCGAGGGTTGTGGCAGCCCATGCTGGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * ** * *
1125395 CAGGCATGTGCTGGTGTCGTATTTTTCTTTGTCGGGTCACCATCACCGGAGCATTGCCGGAAAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* * *
1125460 CTGACCGGCGGCATTGGGGTTCTGGCGATCGAGGGGGCCGGGCGGGGTGTGCGCACATGATGTGC
131 CTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCC-GG-GGGGTGTGCGCACATGATGTGC
*
1125525 GATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
1125590 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
1125655 GGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCTAGTTTTCAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
1125720 CCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACACCTTCCGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
1125785 TTTTAAAAAAT-CTCGAACCGCAAAATGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 TTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
1125849 GCCATAAAACTTCATGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
1125914 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
582 TTGGCA--TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
1125979 CATCCCATCTCT-TAGGGCGGCGTAGTGCCCGTCTGCCCGCCCACCCGCTCATTTCATCGGTTGG
645 CATCCCGTCTCTCT-GGCCGACGTAGTG-CC--C-GCCCG----CCCGCTCGTTTCGTCGGTTGG
* ** * * *
1126043 CTTAGGCTTATAGAGTTCATTCCCAGTCTAACATCA-GACCGGACTACGAGTTTTTAGCTGAATT
701 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGAC--CGAG------G--G----
* ** * * * * *** ** *
1126107 TTTCCTTGTGCATGCCACAAATATACAAGGAACACGTCCAATCAGACTAGACAAAGGGTTACG-G
752 -TT--GTG-GCA-G---C-AGGAT-CGA-TAGCACG--C-A-GAG-GGGGAC--CCGG-T-CGAT
* * * * **** ** *** * *
1126171 CAGCAGGAATGGTAGCTCGTAGAGGGGGACCCGACAATCCTCGACTTGTGCATCCAGCCCCTCTG
797 C-CCCGG-CT--T-G--CG--CATCCCG-CCCCTCTGGCC-GG-C---TG-----AGCGCC-C--
* * * ** ** * * * ****
1126236 GCCAGCTGAGCACCCCACTCTCGT-TTTCGTGGGTT-GACTTA-GGCA-TATGGAGTTCATTCCC
839 G-CA-C---G---CTC-GTTTCGTGGGT--TGACTTAGGCATACGG-AGT-T-CA-TTCCCAG--
1126297 AGTCTAAGC
887 --TCTAAGC
* * ** * *
1126306 ATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACTAAGGGTTGCGACACCACATGCTGGGCC
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG-C
* * * * * * * *
1126371 TCGGGCATGTGCTGGTGCCGTAGTTTTCTTTGCCGGGGCACCAACGCCGAAACATC-CACGGAGA
65 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGC-CGGAGA
* * * * * * *
1126435 ACCTTATCGGCGACATTGGGGTTTCGACGATCGGGGGAGCTGGGGGGTGTGTGCACATGATGTGC
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGC
* *
1126500 AATGGGTGCTGGTA-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
1126564 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGGC-GCCAGTAGCCATTAAAGTGTCTGAAAT
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-GCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1126628 TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTAG
322 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
1126693 AGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAACTCCATCTGAAAAA
387 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
1126758 ATTTTAAAAAAT-TTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAGTAGAAAATGAGTCGTCT
452 ATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
1126822 TGCCATTAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAA-CAGATAAAAATGG
516 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAAATGG
* *
1126886 CATTGGCACACAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
580 CATTGG--CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
1126951 CGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCCCTCGTTTCGTCGGTTG
643 CGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCG----CTCGTTTCGTCGGTTG
* * * *
1127016 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGGACCAAACCGAGGGTTGCGGCAACAGG
700 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGG
* ** * * **
1127080 ATAGGCAGCACGTATAGGGGGACCCGGTCGATCCCTAGCTTGCGCATCCCGCCCCCTCTGGCCGG
765 ATCGATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCG-CCCCTCTGGCCGG
* * *
1127145 CTGAACGCCCGCACACTCGTTTCGTGGGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
829 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
1127210 ATACGAAGTTCATTCCCAGTCTATGATCGGATCGGACCAAGGGTTGCGGCAGCACATGCTAGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * *
1127275 CGGGCATGTGCTGGTGTCACTTTTTTCTTCG-CTAGGGCACCATCG-CTGGAGCATCACCGGAGA
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTC-GGAGCATCGCCGGAGA
* * *
1127338 ACCTGACCGACGGCATTAGGGTTCCGGCGATTGGGGGCGCCAGGGGGGGTGTGCGCACATGATGT
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCC--GGGGGGTGTGCGCACATGATGT
* *
1127403 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATAAAACCTCGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * **
1127468 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTGGCCAACAAAGTGTCTGAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
1127533 TGGGGACACTTTTTTCAAATGGTCACAAAATCATCTACACTTTGAGTTTTTAGCTGAATTGTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
1127598 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
1127663 AATTTTAAAAAATCTCT-AACCGCAAAATGTTTCCAAAATCGTGAAAAATAGAAAACGTGTCGTC
451 AATTTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
1127727 TTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGG
515 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
1127792 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTG
580 CATTGGCA--TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * *
1127857 CGCATCCTGTCTCTCTTACCAACGTAGTACCCGCCCGCCTGCCCGCTCGTTTCGTC-GTTGGCTT
643 CGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
1127921 AGGCATAGGGAGTTCATTCCCAGTCTAAGA-TCGGACCGGACCGAGGGTTGCGGCAGCAGGATTG
704 AGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGGATCG
* * * ** * *
1127985 ACAGCACGTAGAGGGGGACCTGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
769 ATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * * *
1128050 CACCCGCACGCTCATTTCATGGTTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAACC
834 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
1128110 ATACGGAGTTCATTCCAAGTCTAAGAT-----C-G---GA----T----CAG-GCATGCTAGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * * * * ** * *
1128157 CAGGCATGTGCTAGTGTCACTTTTTTATTCGCCAGGGCACCATCACCGGAGCATCACCAGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* *
1128222 CTGACCGACGACATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
131 CTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
1128287 TGGGTGCTGGTACTTGGCCCTTATATAT--TCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 TGGGTGCTGGTACTTGGCCCTTATAT-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
1128350 CCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
1128415 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGCTTTTAGCTGATTTTTTTTGTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
1128480 CATGCCAACAAAAACAAAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCAAAAAAAT
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * *
1128545 TTTAAAAAATCCTGAACTGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
454 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
1128610 CATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*** * *
1128675 GGCATCCAGAAATATGAAGATGTGGAAAAACCCACCTACCACCCTATCGATCCACGGGTTGTGCA
584 GGCAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
1128740 TCCCATCTCTCTAGCCGGCGTAGTGCCCGCCAGCCTGCCCGCCCGCTCGTTTCGTCGGTTAGCTT
647 TCCCGTCTCTCTGGCCGACGTAGT----G-C--CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * *
1128805 AGGCATACGGAGTTCATTCCCTGTCTAAGATT-GGATCAAACTGAGGGTTGTGGTACCAGGATTG
704 AGGCATACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGGATCG
** * * * ** * ** * * ** *
1128869 GCAGTAGGCAGATGGGGACCCGACCAATCCCCGAATTACGCATCCCACCCCTCTGGATGACTGAG
769 ATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
** * * * *
1128934 CGCTTGGACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCAAAGC
834 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
1128994 ATACGAAGTTCATTCCCAGTCTAAGATCTGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * *
1129059 CGGGCATGTGCT-ATACCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
* ** *
1129123 CTGACCGGCGGCATTGGGGTTCCGACGATCTGGGGGATCGGGGGGTGTGCGCACAAGATGTGCGA
131 CTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
1129188 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
1129253 CCCTTAAGGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
1129318 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * ** * * *
1129383 ATCCCAAAAAAAATACAAGGATCATATCTACCATGTTTGGGGCCAAAACCCCTTCCAAAAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * * * *
1129448 TTAAAAAATCCCGAACCGCAAAACGTTTCAAAAATTGTAAAAAATAGAAAACAAGTCATCTTGCC
455 TTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * **
1129513 ATGAAACTTCACGTGAAGGCTTAAAGGACCATTATATGAATTTACAAGCCATAAAAATATCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* ** * *
1129578 GCACGTAGAAATATGAAGATGTGGCTAAACCCACCTAGTACCCTATCGATCAATGGCTTGCGCAT
585 GCA--TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
** * * * * *
1129643 CCAATCTCTCTGGTCGGCATAGTGCCTGCCCGCCCGCCCGCTCGTTCCGTCGGTTGGCTTAGCCA
648 CCCGTCTCTCTGGCCGACGTA--G--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * ** * * ** * *
1129708 TGCGGAGTTCATTCCCAGTCTAAGATCA-GACTGGATCAAGGGTTGCAGTAGCAGGATCGCTAGC
709 TACGGAGTTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGC
* ** * * * *
1129772 ACGCGGAGGGGGACCCAATTGATTCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTAAGCGCCC
774 ACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
1129837 GCACGCTTGTTTCGTGGGTTGAC-T-----TA--G-G--CA-T---A---T--G-
839 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
*
1129871 ----G-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
1 ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * ** * **
1129931 CGAGCTTGTGCTGGTGCCACATTTTTCTTC-TCCGGGGCACCATCACCGGAGCATCACCACAGAA
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-CGGGGCACCATCGTCGGAGCATCGCCGGAGAA
* * *
1129995 CCTGACTGGCGGCATTGTGGTTCCGACGATCGTGGGGGCCGGGGGGTGT--GCACATGATGTGCG
130 CCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
1130058 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCGCAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
1130123 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATGG
259 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
1130188 GGAGACTTTTTACAAATGGTCACAAAATCTTGTACACGTCGAGTTTTTAGCTGAATTTTTTTATG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
1130253 CATTCCAACAAAAATACAAGGATCACGTCTAACAAG-TTGGGGACCAAACCCCCTTCCGAAAAAA
389 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACTCCTTCCGAAAAAA
* ** *
1130317 TTTGAAAAAAT-CTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT-GTCCT
453 TTTTAAAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
1130380 ACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
1130429 GGTTTGCTGC
Statistics
Matches: 19390, Mismatches: 2632, Indels: 1793
0.81 0.11 0.08
Matches are distributed among these distances:
840 2 0.00
841 1 0.00
842 11 0.00
843 5 0.00
844 9 0.00
845 1 0.00
846 4 0.00
847 7 0.00
848 3 0.00
849 4 0.00
850 6 0.00
851 14 0.00
852 5 0.00
853 5 0.00
854 3 0.00
855 7 0.00
856 10 0.00
857 10 0.00
858 8 0.00
859 20 0.00
860 358 0.02
861 66 0.00
862 159 0.01
863 156 0.01
864 270 0.01
865 294 0.02
866 354 0.02
867 59 0.00
868 311 0.02
869 377 0.02
870 140 0.01
871 486 0.03
872 122 0.01
873 98 0.01
874 207 0.01
875 396 0.02
876 62 0.00
877 305 0.02
878 8 0.00
879 885 0.05
880 218 0.01
881 30 0.00
882 336 0.02
883 500 0.03
884 193 0.01
885 10 0.00
886 242 0.01
887 51 0.00
888 4 0.00
889 107 0.01
890 369 0.02
891 291 0.02
892 275 0.01
893 352 0.02
894 644 0.03
895 1367 0.07
896 18 0.00
897 425 0.02
898 965 0.05
899 288 0.01
900 1274 0.07
901 1312 0.07
902 1688 0.09
903 240 0.01
904 84 0.00
905 427 0.02
906 856 0.04
907 72 0.00
908 7 0.00
909 15 0.00
910 12 0.00
911 7 0.00
912 4 0.00
913 4 0.00
914 4 0.00
916 3 0.00
917 3 0.00
918 2 0.00
919 2 0.00
921 3 0.00
922 10 0.00
924 1 0.00
927 13 0.00
928 81 0.00
929 7 0.00
930 3 0.00
931 1 0.00
932 16 0.00
933 16 0.00
934 5 0.00
935 109 0.01
936 5 0.00
937 3 0.00
938 1 0.00
939 3 0.00
940 14 0.00
941 3 0.00
942 18 0.00
943 9 0.00
944 37 0.00
945 14 0.00
946 9 0.00
947 3 0.00
948 7 0.00
949 13 0.00
950 8 0.00
951 14 0.00
952 8 0.00
953 12 0.00
954 4 0.00
955 3 0.00
956 5 0.00
957 1 0.00
958 5 0.00
959 5 0.00
960 106 0.01
961 54 0.00
963 1 0.00
964 12 0.00
965 3 0.00
966 3 0.00
967 10 0.00
968 140 0.01
970 5 0.00
971 1 0.00
972 4 0.00
973 2 0.00
974 477 0.02
975 38 0.00
976 32 0.00
977 83 0.00
978 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
ATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
TAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATTAGGACCAGACCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAGA
GGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
Found at i:1110178 original size:26 final size:26
Alignment explanation
Indices: 1110148--1110201 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
1110138 TGGGTTGACT
1110148 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
1110174 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
1110200 TA
1 TA
1110202 AGATCAGACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:1111083 original size:26 final size:26
Alignment explanation
Indices: 1111047--1111097 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1111037 TGACTTAGGT
*
1111047 ATACGGAGTTCATTCCCAGCCTAAGC
1 ATACAGAGTTCATTCCCAGCCTAAGC
*
1111073 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGCCTAAG
1111098 ATCGAACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGCCTAAGC
Found at i:1112871 original size:26 final size:25
Alignment explanation
Indices: 1112842--1112893 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
1112832 GTTGACTTAG
* *
1112842 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCA-TCTAA
1112868 GCATACAGAGTTCATTCCCATCTAA
1 GCATACAGAGTTCATTCCCATCTAA
1112893 G
1 G
1112894 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCCATCTAA
Found at i:1113506 original size:901 final size:898
Alignment explanation
Indices: 1109286--1130428 Score: 22322
Period size: 901 Copynumber: 23.6 Consensus size: 898
1109276 GTTGACTTAG
* * ** * * *
1109286 GCATACGAAGTTCATTCCCTGTCTAAGATCGGGTCGGACCGAGGGTTACGGCAGCACATACTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
1109351 CTCGGGCATGTGCTGGTACCTCATTTTGCTTCATCGGGGCACCATCG-CGGGAGCATCG-TCGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCT-GGA
* * * * *
1109414 GAACCTGACCGACGGTATTGGGGTTCCGATGATTGAGGGGGCCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATG
*
1109479 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
1109544 TCACCCCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
1109609 ATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
1109674 GGTGCATG-CAACAAAAATAAAAGGATCACGTGTAGCAATTTTGGGGCAAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
1109738 AAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
1109803 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGACTTTACAAGCCGTAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
1109868 CATTGGCA-GACAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGCTCCACGTCTT
583 CATTGGCATG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * **
1109932 GCCCATCCCGTCTCTCTGGCCGGCGTAGTGCTCGATCGCCCGCCTGTCCGCTCGTTTCGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGC-C---CGCCCGCC-CCCCGCTCGTTTCGTCGGTT
* * *
1109997 GGCTTAGGCATACGGAGTTTATTTCCAATCTAAGATCA-GACTAGACCGAGGGTT----------
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACTAGACCGAGGGTTGCGGCAGCAG
* * * * * * * *
1110051 -AT-GGTAGCATGTAGAGGGGGACCCAATTGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCAG
771 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
1110114 CTGAGCACCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAG
836 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * ** * *
1110177 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTTGACTGAGGGTTGCAACAGCACCTGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
1110242 CTCGAGCATGTGCTGGTGCCACTTTTTTCTTCATCGGGGCACCATCATCGGAGCATCG-TCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* * * * *
1110306 AACTTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTA
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
1110371 CGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
1110436 ACCCCCTTAAAGAGCATTTGAGAATTTATAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
1110500 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTACCTAAATTTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
1110565 TGCATGCCAA-AAAATATACAAGGATCATGTCTACCAAGTTTGGGCCCAAAACTGCTTCC-AAAA
390 TGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* **
1110628 AATTTTAAAAAAATCGCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
454 AATTTT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
1110693 TTGCCATGAAACTTCATC-TGAAGGCTTAAGGGACCATTGAATGAACTTACAAGCCATAAAAATG
518 TTGCCATGAAACTTCA-CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * * **
1110757 ACATTGGCACGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACCATACCGATCCACGATTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
1110822 ACGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCG---CCCGCTCGTTTGGTCGGTTGGCTT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
1110884 AGGCATACGGAGTTCATTCCCAATATAAGATCA-GACTAGACCAAGGGTTGTGGCAGCATGATTG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACTAGACCGAGGGTTGCGGCAGCAGGATCG
* * *
1110948 GCAGCACACAGAGGGGGACCCTG-TCGATCCCCGGCTTGCACATCCCGCCCCTCTGGGCGGCTGA
776 GCAGCACGCAGAGGGGGACCC-GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
1111012 CCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGCCTAA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
1111071 GCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGAATCAAGGGTTTCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
1111136 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * * * *
1111201 ACCTAACCGGCAGCATTGGGGTTTCGACAATC-GGGGGGTCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
1111265 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCAAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
1111329 CCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
1111394 GGTACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCAAGTTCTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
1111459 GCATGCCAA-AAAAATACAACGATGACGTCTACCAAGTTTAGGGCCAAAACACCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*** **
1111523 TTTTAAAAAAATCTCGAATTTTAAAAAATGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
456 TTTT-AAAAAATCTCGAACCGT-AAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
1111588 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
1111653 CATTGGTACAT--AGAAATATGAAGATGTGCCTAAACCCACCTCCCACCCTATCGATCCAAGGCT
583 CATTGG--CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
1111716 TGCGCATCCCGTCTCTCTAGCCGGCGTAGAGCCCGCCCG---CCCGCTCTTTTCGTCAGTTGGCT
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * * * *
1111778 TAGACATATGGAGTTCATTCCCAGTCTAAGATCGGA-TCGAACTGAGGGTTACAGTAGCAGAATC
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACTAG-ACCGAGGGTTGCGGCAGCAGGATC
* * * * * * * *
1111842 AGTAGCATGCAGAGGGAGACCCGGTTGATCCCCGGCTTTCGCATCCCACCCCTCTGGCCGGCTGA
775 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
1111907 GTGCCCACACGCTTGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCCAA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
1111965 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
1112030 CTCGGGCATGGGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCG-TCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* ** * * * *
1112094 AACTTGACCGGTAGCATTGGGGTTTCGGCGATCGAGGGGGCTGTGGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC--CGGGGGGTGTGCGCACATGATG
* * *
1112159 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
1112224 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
1112289 ATGGGGACACTTTTTTC-AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
1112353 TGTGCATGGCAAAAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
1112418 AAATTTTAAAAAATCCCGAATCC-TAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACTAGTCGT
453 AAATTTTAAAAAATCTCGAA-CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
1112482 CTTGCCTTGAAACTTCACGTGAAGGCTTAAAGGACCATTGTACGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
1112547 GCATTGTCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCCT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
1112612 GCGCTTCCCGTCTCTCTGGCTGACCTAGTGCCCGCCCGCCTACCTACCTACTCATTTCGTCAGTT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC--CC--CC-GCTCGTTTCGTCGGTT
* * *
1112677 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATAGGACTAGACCGAGGGTTGTGGCAGTAGG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACTAGACCGAGGGTTGCGGCAGCAGG
* * * * * * * **
1112742 ATTGGTAGCACGCAGAGGGTGACCCGGTTGATCCTCGGCTTGCGCATCCC-CCCCTTTGGTTGGC
772 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * ** *
1112806 TGAGCGCCCGTACGTTTGTTTCACGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1112868 GCATACAGAGTTCATTCCCA-TCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1112932 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATTGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* *
1112997 ACCTAACCGGCGGCTTTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-GTTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG-TGCGCACATGATGTG
*
1113061 CGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
1113126 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGTCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1113191 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
1113256 TGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTCGGGGCCAAAACTCCTTCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
1113321 AATTTAAAAAATCTCGAACCGTAAAAAATTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCTT
455 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * ** *
1113386 GCCATGAAACTTCACTTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGTGATAAAAATGGCT
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
1113451 TTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
1113516 CATCCCGCCTCTCTGGCCGACGTAGTGCCCGCTCG---CCCGCTTGTTTCGTCAGTTGGTTTAGG
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ** * * * *
1113578 CATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCGGTAGTAGGATAGGCAG
715 CATACGGAGTTCATTCCCAGTCTAAGATAGGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * *
1113643 CACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCTGCCCCTCTGGTCGGCTTAGCGCC
780 CACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
1113708 CGTAC-CATCATTTTGTGGGTTGAC-T-----TA--G-G--------CA---T-A
845 CGCACGC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1113741 -CAT----AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
1113801 CTCGAGCATG-GCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
*
1113865 ACCTGACCGGC-GCATTGGGGTTCCG-CGATC--GGGGGCCGGTGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
1113926 GATGGGTGCTAGTACTTGGCCCTTATATT-G-CCCCTATCCCCTCATCAAACCTC-AGAACTCAC
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCCTCATCAAACCTCGAGAACTCAC
*
1113988 ACGCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAA
260 AC-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1114052 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
1114117 GTGCATGCCAA-AAAAAGTAC-AGGATCACGTCTACC-AGTTTTGGGGCCAAAACT-CTTTCGAA
389 GTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAA
*
1114178 AAAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCG
452 AAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
**
1114242 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
1114307 GGCATTGGCATGTAGAAATATGAAGATGTG-CTGAAACCCACCTACCACCCTATCGATCCACTGC
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
1114371 TTGAGCATCTCGCCTCTCTGGCCGACGTAGAGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGG
645 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CCCGCTCGTTTCGTCGGTTGG
* ** * * *
1114436 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCTGA-TCGGATCGAGGGTTGTGGCAGCAGGA
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACT-AGACCGAGGGTTGCGGCAGCAGGA
* * * * * * * *
1114500 TTGACAGCACGCAGAGGGGGACCTGGTCGATCCCTGACTTGCGCATCCCGCCCCTTTGG-CAGCT
773 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
1114564 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAG--T--
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
1114621 G--TA---AG---------A-TC--AGAT-----CGGACCGAGGGTTACGTTAGCACATGCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1114664 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
** * * * *
1114729 ACCTGACCGATGGTATTGGGGTTCTGGCAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
1114794 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
1114859 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
1114923 GGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
1114988 GCATGCCAAAAAAAATACAAGGATGACGTCTACCAAGTTTTGGACCAAAACTCCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAA
* * * * * *
1115053 ATTTTAAAAAATCCCAAACCATAAAAAGTTT-GAAAATCGTGAAGAATAGAAAACGAGTCATCTT
455 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
1115117 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** *
1115182 TTGGCACACAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
1115247 CATCCTGTCTCAT-TGGCCGACGTAGTGCCCGCCCATCCACCCGCCCGCTCATTCCGTCGGTTGG
650 CATCCCGTCTC-TCTGGCCGACGTAGTGCCCG--C--CCGCCC-CCCGCTCGTTTCGTCGGTTGG
* * ** ** *
1115311 CTTAGGCATTCGGAGTTCATTCCCAGTCTAAGATCGGACT-GAACTAAGGGTTGTAGCAGTAGGA
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACTAG-ACCGAGGGTTGCGGCAGCAGGA
* * * ** *
1115375 TC-GCAAGCACGCAGAGGGGGACTCGGTCGATCCCCGACTTGCGCATCCTACCCCTCTGGCCGAC
773 TCGGC-AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
1115439 TGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGAAGTTCATTCCTAGTC-AA
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * *
1115500 GCATATGAAGTTCATTCCCAGTCTAAGATTGGATTGGACCGAGGGTTACGCCAGCGCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** ** *
1115565 CTCGGGCAAGTGCTGGTGTTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCG-TCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* * *
1115629 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGT
*
1115694 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
1115759 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1115823 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGATTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
1115888 GTGCATGACAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** * *
1115953 AATTTTAAAAAATCCCGAACC-TCAAAAAATTTTGAAAATCATGAAAAATAAAAAACGAGTCGTC
454 AATTTTAAAAAATCTCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
1116017 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
1116082 CATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * **
1116147 CGCGTCCCGTCTCTCT-GCTCGACGTAGTGCCCACCCGTCTGCCCGCCCGCTCGTTTTGTCATTT
648 CGCATCCCGTCTCTCTGGC-CGACGTAGTGCCC-GCC--C-GCCC-CCCGCTCGTTTCGTCGGTT
* *
1116211 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GA-TCAGATCAAGGGTTGCGGCAGCA
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACT-AGACCGAGGGTTGCGGCAGCA
* * * * * * *
1116274 GGATCGGCAGCATGCAGAGGGGGACCCGACCGATCCTCGGGTTACGCATCCCGCCCCTGTGGTCG
770 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
1116339 GCTGAGCGCCCACTCGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATT-CC---C-AA
835 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1116398 TC-TA---AG---ATT----G-----GA----A-CGGACTGAGGGTTGCGACAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1116442 CACGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCCCCATCATCGGAGCATCACTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * * * *
1116507 ACCCGACCGGTGGCATTGGGGTTCCGACGATC-GCGGGGCCGGGGGGTGTGCGCACATGATTTGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
1116571 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCGAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
1116636 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* **
1116700 GGGACACTTTTTTCAAATGGTCACAACATCTTGTACACTTCGAGTTTTTATTTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
1116765 GCATGCCAACAAAAATACAAGGATCATGTCTACCGAGTTTGGGGCCAAAACTCGTTCC-AAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** * *
1116829 GTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCTTGAAAAATAAAAAACGAGTCGTCTTG
456 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
1116894 CCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
1116959 TGGCATGCATAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGT
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
1117024 ATCCCATCCCTCTGGCCGGA-GTAGTGCCCG-CCGCCCGCCCGCTCATTTCATCGGTTGGCTTAG
651 ATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCCC-CCCGCTCGTTTCGTCGGTTGGCTTAG
** * * * * * *
1117087 GCATACGGAGTTCATTCGTAGTCTAAGATCGGA-TCGAACCAAGGGTTACGGTAGCAGGATCGGT
714 GCATACGGAGTTCATTCCCAGTCTAAGATAGGACTAG-ACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
1117151 AGCACGCAGAGGGGGACCCGA-CTGATCCTCGACTTACGCATCCCACCCCTCTAGCCGACTGAGC
778 AGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
1117215 ACCAGCACGCTCGTTTTGAGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
1117272 GCATACGGGGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
1117337 CTCGGGCACGTGCTGGGGCCGTATTTTTCTTCGTCGGGGTACCATCACCGGAGCATCG-TCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* * * * * *
1117401 AACCTGACTGACGGCATTGGGGTTTCGATGATTGGGGCGCCGG-TGGGGGGTGTGCGCACATGAT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-G--GGCCGGGGGGTGTGCGCACATGAT
* * *
1117465 GTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
1117530 CACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCCAGTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
1117595 AATGGGGACACTTTTTTCAAACGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTT
322 AATGGGGACACTTTTTTCAAA-TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
1117660 TTTATGCATGCCAACAAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCATAACTCCTTCCCA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
1117725 AAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
451 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
1117790 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
1117855 GGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
1117920 TACGCATCCTGTCTCTCTGGCCGACGTAGTGCCTGCCCG---CCCGCTCGTTTCATCGGTTGGCT
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCGGTTGGCT
* ** ** *
1117982 TAGGCATACGGAGTTCATTCCCAGCCTAAGATCA-GACCGGATTGAGGGTTGCAGCAGCAGGATC
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACTAGACCGAGGGTTGCGGCAGCAGGATC
* * * * * *
1118046 GTCAGCACGCCGAGGGTGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCTTCTGGCCGGCTGA
775 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * ** * *
1118111 ACGCCCGCACACTTATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
1118170 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGTGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1118235 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCG-CTAGGGCACCATCGTCGGAGCATTGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCTGGAG
* *
1118299 AACCTGACCGACGGCATTGGGGTTCCTACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
1118363 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
1118428 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
1118493 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGGTGAATTCTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
1118558 TGCATGCCAACAAAAATACAAGCATCACGTCTACCAAGTTTGGTGCCAAAACGCCTTCCGTAGAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * *
1118623 ATTTTAAAAAATC-CAAACCGT-AAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTTGTCTT
455 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
1118686 GCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
1118751 TTGGCATGCAAAAAGATGAACATTTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCA
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
1118816 CACCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCCGGCCGCCTACCCCTTCGTTTTGTCGGTTGG
650 CATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCC-GCC-CC--CCGC-TCGTTTCGTCGGTTGG
* * * * * * * * *** * *
1118880 CTTAGGTATACGGAGATCATTGCCAATCTAAGATCGGACCAGACCAAGAGTCATGGTAGTAGGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACTAGACCGAGGGTTGCGGCAGCAGGAT
* * * * * *
1118945 CGACAGCACGCAGAGGGGGACCC-AGCCGATCCCTGACTTGCGCATCTCGCCCCTCTGGTCGGCT
774 CGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * *
1119009 GAGTGCCCGCATGCTAGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCTAGTTTAA
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1119070 GCATACGGAGTTCATTCCCAGTCTAGGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
1119135 CTCGGGCATGTGCTGGTGCCACATTTTTTTTTGTCGAGGCACCATCGCCGGAGCATCAAC-GGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-GCTGGAG
* * *
1119199 AACCTGACCGGCGGCATTGGGGTTTC-AGCAATC-GGGGGTCCGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
1119262 GCGCTGGGTGCTGGTACTTGGCCCTTAAATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
1119326 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG-AA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1119390 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
1119455 GTGCGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** ** *
1119520 AATTTTAAAAAAT-TCTGAACCGTAAAAAGTTTTGAAAATTATGAAAAATAGAAAATGAGTCGTC
454 AATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
1119584 TTGCCATGAAACTTCACGTGCAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
**
1119649 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * **
1119714 CGCATCCCGCCTCTCTAGCCGACGTAGTGCCCGTCCGCCTGCCCGACCGCTTGTTT--TCATTTG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CC-GCCC-CCCGCTCGTTTCGTCGGTTG
* * * * * * ** * * *
1119777 GTTTAGTCATACAGAGTTCATTCCTAGTCTATGATAGGACCAGA-CGAGGGTTATGGTAGTAGGT
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACTAGACCGAGGGTTGCGGCAGCAGGA
* * *
1119841 TCGGCAGCACGCAGAGGGGGACCC-AGCCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
773 TCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
1119905 TGAGTGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAA
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
1119967 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1120032 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCAGAGCATC-ATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* * * *
1120096 AACTTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGCGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
1120161 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
1120226 ACCCCCTTAAAGAGCATTTTAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1120291 GGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
1120356 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCTAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
1120421 ATTTTAAAAAATC-CTAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
455 ATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
1120485 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAGTTTACAAGCCATACGAAA-GG
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGG
* * *
1120549 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGACTTA
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * *
1120614 CGCATCCCATCTCTCTGGTCGGTGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTCATTTTGTCT
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CCCG----CTCG----TTTCGTCG
** ** * ** * * *
1120679 GTTGGCTTAGGCATACAAAGTTCATTCATAGTCTAAGATTGGACGGGACCGAAGATTACGGCAGC
704 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACTAGACCGAGGGTTGCGGCAGC
* * * * * *
1120744 AGAATCGACAGCACGTAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCACCCCTC-GGCC
769 AGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
1120808 GACTGAGCGCCCGCATGCTAGTTTCGTGGGTGGACTTAGGCATACGGAGTTCATTCCCAGTC-AA
834 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
1120872 GGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGATTGCGACAGCACATGTTGG
1 -GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
1120937 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGTGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAG
* * * *
1121002 AACCTGACTGGAGGCATTGGGGTTCC-AGCGATC-GGGGGGCTGGGGGGTGTGCACACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
1121065 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCAT-ATCAAACCTCGAGAACTC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC-TCATCAAACCTCGAGAACTC
** * * * *
1121129 ATGCTCCCTTAAAGAGCATTTGAGATTTTATATGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
1121194 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
1121259 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTGGTAGACGT
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC----T---CCT
* ** *
1121324 GATCCTTGTATTTTTGTTGGCATGTCATGTCTGCCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
446 --TCC--G-A-----------A----A--------AAATTT----TAAAAAAT-C--TCG----A
*** * * * * * *
1121389 ATTTTAAAAAATCTCGAGCCCTAAAAAGT-TTCAAAAATCGTGAAAAGTAGACAAGGAGTCATCT
472 ACCGTAAAAAGT-T-----TC-AAAAA-TCGTGAAAAA---T----AG-A-A-AACGAGTCGTCT
*
1121453 TGCCATGAACCTTCACGTGAAGGCTT-AGGGCACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGG-ACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
1121517 CATTGGCACGTAGAAATATGAAGATGTGCTTAAACCCACCTACCACCTTATCGATCCATGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
1121582 CGCATCTCGCCTCTCTGGCCGACGTAGTACCCGCCCGCCCACCTGCTCATTTCATCGGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CCCGCTCGTTTCGTCGGTTGGCTT
** * * * *
1121647 AGGCATACGGAGTTCATTCATAGTCTAAGATCA-GACCAAACCGAGGGTTACGGTAGCAGGATCG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACTAGACCGAGGGTTGCGGCAGCAGGATCG
* ** * * *
1121711 GTAGCACGCAGAGGGGGACCCGA-CAGATCCTTGGCTTGCGCATCTCGCCCCTTTGACCGGCTGA
776 GCAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
1121775 GCCCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAG--T--
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1121830 -C-TA---AG---ATT----G-----GAT-----CGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
1121873 CTCGGGCATGTGTTGGTGCCGCATTTTCCTTTG-CTGGGGCACTATCATCGGAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCTGGAG
* * *
1121937 AACCTGACCGGCGGCATTAGGGTTGCGGCGAT------GG--GGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * ** **
1121994 TGATGGATGCTTTTACTTGGCCCTTATATTGGCCCTTTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* ****** * * ** * * *
1122059 A-CCCTTTATCCCTTATATTG-GCCCTTATATTGGCCCTTAAAG-TGCCAGTAGCCAGTAGCCAG
260 ACCCCCTTAAAGAGCAT-TTGAG--ATTTTACAGG---TT--TGCTGCCAGTAGCCATTA--AAG
* * **** ** *
1122121 TAGCCAGTACACATTGAGTTTTTAGCTGTTTTGTGC--ATGG-CAACAAAAATACAAGGATCACG
315 T-GTCTG-A-A-A-TG-G-GGACA-CT-TTTT-T-CAAATGGTC-AC-AAAAT-CTTGTA-CAC-
* ** * ** ** * *** *** ** *
1122183 TCTACCAAGTTTGGGATCAAAACTCCTTTCGAAAAAAT-TTTA-AAAAAT-C-CCGAAC-CG-CT
364 T-T--CGAGTTT-TTAGCTGAA-TTTTTTTG--TGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * ** * * *** * * *
1122242 A-AAAGTTT--TG--AAAA-T-CGT--G-AAAGA-TAGAAAACGAGTCACCTTGCCAT-GAAA-C
422 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA--AATC-TCGAACCGTAAAAAGT
*** ** * * * * * *** ****
1122294 TTC----AT-GTGAAGGCTTA-AGGGACCA-TTGT-GTG-AATTTAAAAGCCATAAAAATGG--T
484 TTCAAAAATCGTGAA-AAATAGA-AAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAA-GGCTT
** * * *** ** * ** ** ** **
1122348 ATTGG-CACATAGAAATATGAA--GATGTGCC-T--AAA-CCCACCTACCACCCTATCAAT-CCA
545 AAGGGAC-CATTG---TATGAATTTACAAGCCATAAAAATGGCA-TTGGCATGC-AGAAATATGA
* * * * * ** ** ** *
1122405 CAGCT-TGCGC--ATCCCGTCTCT-CTAGCCGGT-GTAGTGCC-C-GCCCGC-CCGCCCGCCTGC
604 -AGATGTGC-CTAAACCC-AC-CTACCACCCTATCG-A-T-CCACGGCTTGCGCATCCCGTCT-C
** * * *** * *** *** * * * *
1122462 T-TGTTTCGTCGGTTG-GCTTACGCATACGGAGTTCATTCCCAGTCTAAGAG-TGGAC--CGG-A
661 TCTG-GCCGAC-GTAGTGCCCGCCCGCCCCCCGCTCGTT-TC-GTC---G-GTTGG-CTTAGGCA
* * * * ** ** * * * * * * **
1122521 -CCGAGGGTTGAGGTAGCAGGAT-CGACAGCACATAGA--GGGGGACT-C-G-ATC--GATCCCC
717 TACG-GAGTTCA-TTCCCAGTCTAAGATAGGAC-TAGACCGAGGG-TTGCGGCAGCAGGATCGGC
* ** ** **** * ** * * * ** *
1122577 GGCTTGCTCA-TCCCACCC-CTC--TGGCCGGC-TGAGCA-CCCGCACGCTCATTTCGTGGGTTG
778 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGC-C-C-C-TCTGGCCGGCTG
**** * ** * ** ** * * *
1122636 A-TTTACGTATACG-GAG-TTCATTCGCAGTC-TAAGCATACAGAGTTCATTCCCAGTCTAA
839 AGCGCCCG--CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
1122694 G-AT-C--AG---------A--C-----T-GGATC--A---AGGGTTGGGGCAGCATTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1122733 TTCGGGCATGCGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCG-CTGGAACATCG-TCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGCT-GGA
** ** *
1122796 GAACCTGACCGATGGCATTGGGGTTCCGACGATTAGGGGGGCCGGGGGGTGTGCGCAAATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
1122861 GCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
1122926 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-GCAATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1122990 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** * *
1123055 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACAAAGTTAAGGGCCAAAACTCCATCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
1123120 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
1123185 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
1123250 ATTGGCATGTAGAAATATGAATATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * **
1123315 GCATCCCGTCTCTCTGGCCGAAGTAGTGCCCGTCCG---ATCGCTCGTTTCGTCGGTTGGCTTAG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCGGTTGGCTTAG
* ** * * * * *
1123377 GCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGATTGAGGGTTGCAGCAGTAAGATCAGT
714 GCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACTAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * *
1123441 AGCATGCAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGTCGGCTGAGCG
778 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
**
1123506 CCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
1123562 GCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGCAGCAACACAT-CTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1123626 CTTGGGCATGTGCTGGTGCCATC-TTTTTCTTCGTTGGGGCACCA---TC---G---C-C-GGAG
66 CTCGGGCATGTGCTGGTGCC-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAG
** * * * * *
1123679 AACCTGACCAACGACATTGGGGTTTCGACGAT-GAGGGTGCCGGAGGTGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGT
* *
1123743 GCGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1123808 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
1123873 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTATTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * **
1123938 GTGCATGGCATA-AAAAATACAAGGATCGTGTCTACCAAGATAAGGGCCAAAACTCCTTCCGAAA
389 GTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * * * *
1124002 AAATTTTAAAAAATTTTGAATCGCAAAAAGTTTCCAAAATCTTGAAAAATAAAAAACGAGTCATC
453 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
1124067 TTGCCTTGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
1124132 CATTGCCATGTAGAAATATGATGATGTGCCTAAACCCACCTGCCACCCTATCGATCCTCGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
1124197 TGCATCTCGTCACTCTGGCCGACATTGTGCCTGCCCGCCCGCCCGCTC-ATTCGTCGGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
1124261 AGGCATACAGAGTTCATTCCCAGTCTGAGATCA-GACTGGACTGAAGGTTGTGGCAGCAGGATCG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACTAGACCGAGGGTTGCGGCAGCAGGATCG
* * * *
1124325 GCAGCACACAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAG
776 GCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
1124390 CGTCCGTACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1124448 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
1124513 CTTGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCG-TCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* ** * * *
1124577 AACCTGACCGACGGCATTAAGATTCCGATGATCGGGGGGGCCGGGGGGGATGGGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGG-TGTGCGCACATGATG
* ** *
1124642 TGCGATGGATGCTGGTACTTGGCCCTTATGCTGGCCCCCCTATCCCTCATCAAACCTTGAGAACT
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACT
*
1124707 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
**
1124772 AATGGGGACACTTTTTTCAAATGGTCACAAAAAATTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
1124837 TTGTGCATGCCAACCAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAGCACCTTCTGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
1124902 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGT
452 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
1124967 CTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
1125032 GCAATGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATACACAGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
1125097 GCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCACCTGTCCGTCCGCTCGTTTCGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC---CC--CCGCTCGTTTCGTCGGTT
* ** * * *
1125162 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA-GACCGGACCAAGGGTTGCAGTAGCAG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACTAGACCGAGGGTTGCGGCAGCAG
* * * * * * * * * *
1125226 GATTGTCAGCATGCAGAGTGAGATCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGA
771 GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
1125291 CTGAGCACCCGCACACTCGTTGCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1125354 G-AT-C--AG---------A--C------C--A---GACCGAGGGTTGTGGCAGCCCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ** * * *
1125393 CTCAGGCATGTGCTGGTGTCGTATTTTTCTTTGTCGGGTCACCATCACCGGAGCATTGCCGGAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * *
1125458 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGAGGGGGCCGGGCGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GG-GGGGTGTGCGCACATGATGT
*
1125523 GCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
1125588 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
1125653 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCTAGTTTTCAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
1125718 GTCCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACACCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
1125783 AATTTTAAAAAATCTCGAACCGCAAAATGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
1125848 TGCCATAAAACTTCATGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
1125913 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
1125978 ACATCCCATCTCT-TAGGGCGGCGTAGTGCCCGTCTGCCCGCCCACCCGCTCATTTCATCGGTTG
649 GCATCCCGTCTCTCT-GGCCGACGTAGTG-CC--C-GCCCGCCC-CCCGCTCGTTTCGTCGGTTG
* ** * ** * *** * *
1126042 GCTTAGGCTTATAGAGTTCATTCCCAGTCTAACATCA-GACCGGACTACGA-GTTTTTAGCTGAA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACTAGAC--CGAGGGTTGCGGCAGCA
*** * *** * *** * *
1126105 TTTTTCCTTGTGCATGCCACAAATATACA-AGGAACACGTCCAATCAGACTAGACAAAGGGTTAC
770 -GGAT-C--G-GCA-G-CAC------GCAGAGGGGGAC--CCGATC-GA-T---CCCCGGCTTGC
* * *** * * *
1126169 GGCA-GCAG-GAATGGTAGCTC-G-TAGAGGGGGACCCGACAATC-CTCGACTTGTGCATCCAGC
815 -GCATCCCGCCCCT-CTGGC-CGGCT-GA--GCG-CCCG-C-A-CGCTCG---T-T---T-C-G-
* * * * ** * **
1126229 CCCTCTGGCCAGCTGAGCACCCCACTCTCGTTTTCGTGGGTTGACTTAGGCATATGGAGTTCATT
860 -----TGG---G-T-TG------ACT-TAG---GCATACG--GAGTT---CAT-T----CCCA--
*
1126294 CCCAGTCTAA
893 G----TCTAA
* * * ** * *
1126304 GCATACGAAGTTCATTCCTAGTCTAAGATCAGACCGGACTAAGGGTTGCGACACCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * *
1126369 CCTCGGGCATGTGCTGGTGCCGTAGTTTTCTTTGCCGGGGCACCAACGCCGAAACATC-CACGGA
66 -CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGC-TGGA
* * * * * * *
1126433 GAACCTTATCGGCGACATTGGGGTTTCGACGATCGGGGGAGCTGGGGGGTGTGTGCACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
1126498 GCAATGGGTGCTGGTA-TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
1126562 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGGC-GCCAGTAGCCATTAAAGTGTCTGAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-GCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1126626 ATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
1126691 AGAGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAACTCCATCTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
1126756 AAATTTTAAAAAATTTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAGTAGAAAATGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
1126821 TTGCCATTAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAA-CAGATAAAAATG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAAATG
** *
1126885 GCATTGGCACACAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
1126950 GCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCCCTCGTTTCGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CCCG----CTCGTTTCGTCGGTT
* * * *
1127015 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAACAGG
707 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACTAGACCGAGGGTTGCGGCAGCAGG
* * * * **
1127080 ATAGGCAGCACGTATAGGGGGACCCGGTCGATCCCTAGCTTGCGCATCCCGCCCCCTCTGGCCGG
772 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG-CCCCTCTGGCCGG
* * *
1127145 CTGAACGCCCGCACACTCGTTTCGTGGGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1127208 GCATACGAAGTTCATTCCCAGTCTATGATCGGATCGGACCAAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
1127273 CTCGGGCATGTGCTGGTGTCACTTTTTTCTTCG-CTAGGGCACCATCG-CTGGAGCATCACCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTC-GGAGCATCGCTGGA
* * * * *
1127336 GAACCTGACCGACGGCATTAGGGTTCCGGCGATTGGGGGCGCCAGGGGGGGTGTGCGCACATGAT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGAT
* *
1127401 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATAAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * **
1127466 CACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTGGCCAACAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
1127531 AATGGGGACACTTTTTTCAAATGGTCACAAAATCATCTACACTTTGAGTTTTTAGCTGAATTGTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
1127596 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * *
1127661 AAAATTTTAAAAAATCTCTAACCGCAAAATGTTTCCAAAATCGTGAAAAATAGAAAACGTGTCGT
452 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
1127726 CTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1127791 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** * * *
1127856 GCGCATCCTGTCTCTCTTACCAACGTAGTACCCGCCCGCCTGCCCGCTCGTTTCGTC-GTTGGCT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC-CCCCGCTCGTTTCGTCGGTTGGCT
* * ** *
1127920 TAGGCATAGGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATTG
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACTAGACCGAGGGTTGCGGCAGCAGGATCG
* * * * * *
1127985 ACAGCACGTAGAGGGGGACCTGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
776 GCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
1128050 CACCCGCACGCTCATTTCATGGTTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
841 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1128108 CCATACGGAGTTCATTCCAAGTCTAAGAT-----C-G---GA----T----CAG-GCATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * ** * **
1128155 CTCAGGCATGTGCTAGTGTCACTTTTTTATTCGCCAGGGCACCATCACCGGAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * *
1128220 ACCTGACCGACGACATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
1128285 GATGGGTGCTGGTACTTGGCCCTTATATAT--TCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 GATGGGTGCTGGTACTTGGCCCTTATAT-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
1128348 ACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
1128413 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGCTTTTAGCTGATTTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
1128478 TGCATGCCAACAAAAACAAAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
1128543 ATTTTAAAAAATC-CTGAACTGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
455 ATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
1128607 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *** * *
1128672 ATTGGCATCCAGAAATATGAAGATGTGGAAAAACCCACCTACCACCCTATCGATCCACGGGTTGT
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
1128737 GCATCCCATCTCTCTAGCCGGCGTAGTGCCCGCCAGCCTGCCCGCCCGCTCGTTTCGTCGGTTAG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-C--CC-GCCC-CCCGCTCGTTTCGTCGGTTGG
* * * * * * *
1128802 CTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGGA-TCAAACTGAGGGTTGTGGTACCAGGA
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACT-AGACCGAGGGTTGCGGCAGCAGGA
* * * * * * ** * * ** *
1128866 TTGGCAGTAGGCAGATGGGGACCCGACCAATCCCCGAATTACGCATCCCACCCCTCTGGATGACT
773 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
** * * * *
1128931 GAGCGCTTGGACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCAAA
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1128992 GCATACGAAGTTCATTCCCAGTCTAAGATCTGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1129057 CTCGGGCATGTGCT-ATACCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-TCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* ** *
1129120 AACCTGACCGGCGGCATTGGGGTTCCGACGATCTGGGGGATCGGGGGGTGTGCGCACAAGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
1129185 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
1129250 ACCCCCTTAAGGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
1129315 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** * * *
1129380 TGCATCCCAAAAAAAATACAAGGATCATATCTACCATGTTTGGGGCCAAAACCCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * * *
1129445 ATTTTAAAAAATCCCGAACCGCAAAACGTTTCAAAAATTGTAAAAAATAGAAAACAAGTCATCTT
455 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * **
1129510 GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTATATGAATTTACAAGCCATAAAAATATCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * ** * *
1129575 TTGGCACGTAGAAATATGAAGATGTGGCTAAACCCACCTAGTACCCTATCGATCAATGGCTTGCG
585 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * * * *
1129640 CATCCAATCTCTCTGGTCGGCATAGTGCCTGCCCGCCCGCCCGCTCGTTCCGTCGGTTGGCTTAG
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
1129705 CCATGCGGAGTTCATTCCCAGTCTAAGATCA-GACTGGATCAAGGGTTGCAGTAGCAGGATC-GC
714 GCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACTAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * *
1129768 TAGCACGCGGAGGGGGACCCAATTGATTCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTAAGC
778 -AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
1129833 GCCCGCACGCTTGTTTCGTGGGTTGAC-T-----TA--G-G--------CA---T--
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
1129868 --AT--GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * ***
1129929 CTCGAGCTTGTGCTGGTGCCACATTTTTCTTC-TCCGGGGCACCATCACCGGAGCATCACCACAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-CGGGGCACCATCGTCGGAGCATCGCTGGAG
* * *
1129993 AACCTGACTGGCGGCATTGTGGTTCCGACGATCGTGGGGGCCGGGGGGTGT--GCACATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
1130056 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCGC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1130121 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
1130186 GGGGAGACTTTTTACAAATGGTCACAAAATCTTGTACACGTCGAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
1130251 TGCATTCCAACAAAAATACAAGGATCACGTCTAACAAG-TTGGGGACCAAACCCCCTTCCGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACTCCTTCCGAAAA
* ** *
1130315 AATTTGAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT-GTCC
454 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
1130379 TACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
1130429 GGTTTGCTGC
Statistics
Matches: 17130, Mismatches: 2383, Indels: 1499
0.82 0.11 0.07
Matches are distributed among these distances:
840 2 0.00
841 1 0.00
842 11 0.00
843 5 0.00
844 9 0.00
845 1 0.00
846 4 0.00
847 7 0.00
848 3 0.00
849 4 0.00
850 6 0.00
851 14 0.00
852 4 0.00
853 3 0.00
854 5 0.00
855 8 0.00
856 10 0.00
857 10 0.00
858 15 0.00
859 24 0.00
860 364 0.02
861 58 0.00
862 154 0.01
863 143 0.01
864 271 0.02
865 53 0.00
866 62 0.00
867 60 0.00
868 309 0.02
869 376 0.02
870 138 0.01
871 485 0.03
872 120 0.01
873 90 0.01
874 213 0.01
875 396 0.02
876 59 0.00
877 107 0.01
878 5 0.00
879 883 0.05
880 222 0.01
881 30 0.00
882 331 0.02
883 370 0.02
884 191 0.01
885 5 0.00
886 240 0.01
887 52 0.00
888 3 0.00
889 105 0.01
890 362 0.02
891 152 0.01
892 281 0.02
893 363 0.02
894 572 0.03
895 797 0.05
896 23 0.00
897 427 0.02
898 944 0.06
899 301 0.02
900 1286 0.08
901 1331 0.08
902 1247 0.07
903 229 0.01
904 75 0.00
905 305 0.02
906 856 0.05
907 64 0.00
908 1 0.00
909 1 0.00
910 2 0.00
912 4 0.00
913 1 0.00
914 4 0.00
915 3 0.00
916 2 0.00
917 1 0.00
918 4 0.00
919 3 0.00
920 3 0.00
922 1 0.00
923 3 0.00
924 4 0.00
927 9 0.00
928 81 0.00
929 7 0.00
930 7 0.00
931 3 0.00
932 4 0.00
933 15 0.00
934 5 0.00
935 113 0.01
936 6 0.00
937 1 0.00
938 1 0.00
939 5 0.00
940 11 0.00
941 2 0.00
942 2 0.00
943 4 0.00
944 21 0.00
945 8 0.00
946 6 0.00
947 4 0.00
948 8 0.00
949 8 0.00
950 13 0.00
951 21 0.00
952 12 0.00
953 15 0.00
954 11 0.00
955 10 0.00
956 3 0.00
957 1 0.00
958 13 0.00
959 6 0.00
960 108 0.01
961 63 0.00
963 1 0.00
964 3 0.00
965 3 0.00
966 4 0.00
967 9 0.00
968 157 0.01
969 1 0.00
970 12 0.00
971 2 0.00
972 4 0.00
973 10 0.00
974 477 0.03
975 37 0.00
976 26 0.00
977 84 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATAGGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1115509 original size:25 final size:25
Alignment explanation
Indices: 1115473--1115522 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
1115463 GGGTTGACTT
*
1115473 AAGCATACGAAGTTCATTCCTAGTC
1 AAGCATACGAAGTTCATTCCCAGTC
*
1115498 AAGCATATGAAGTTCATTCCCAGTC
1 AAGCATACGAAGTTCATTCCCAGTC
1115523 TAAGATTGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (25 bp):
AAGCATACGAAGTTCATTCCCAGTC
Found at i:1116879 original size:26 final size:26
Alignment explanation
Indices: 1116824--1116880 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
1116814 ACTCGTTCCA
**
1116824 AAAAAGTTTAAAAAATCTCGAACCAC
1 AAAAAGTTTAAAAAATCTCGAAAAAC
* * *
1116850 AAAAAGTTTCAAAAATCTTGAAAAAT
1 AAAAAGTTTAAAAAATCTCGAAAAAC
1116876 AAAAA
1 AAAAA
1116881 ACGAGTCGTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.60, C:0.12, G:0.07, T:0.21
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCTCGAAAAAC
Found at i:1117284 original size:26 final size:26
Alignment explanation
Indices: 1117246--1117298 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1117236 GTTGGCTTAG
1117246 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1117272 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1117298 G
1 G
1117299 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1118180 original size:26 final size:26
Alignment explanation
Indices: 1118144--1118196 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1118134 GTTGACTTAG
1118144 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1118170 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1118196 G
1 G
1118197 ATCGGAATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1118289 original size:898 final size:894
Alignment explanation
Indices: 1113744--1130428 Score: 15382
Period size: 900 Copynumber: 18.6 Consensus size: 894
1113734 AGGCATACAT
*** *
1113744 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * * * *
1113809 TG-GCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* ** *
1113873 GGC-GCATTGGGGTTCCG-CGATCGGGGGCCGGTGGGTGTGCGCACATGATGTGCGATGGGTGCT
131 GACGGCATTGGGGTTCCGACGATCGGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
1113936 AGTACTTGGCCCTTATATT-G-CCCCTATCCCCTCATCAAACCTC-AGAACTCACACGCGCCTTA
196 GGTACTTGGCCCTTATATTGGCCCCCTAT-CCCTCATCAAACCTCGAGAACTCACAC-CCCCTTA
1113998 AAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
1114062 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
1114127 AAAAAAGTAC-AGGATCACGTCTACC-AGTTTTGGGGCCAAAACT-CTTTCGAAAAAATTTTAAA
389 AAAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * ** *
1114189 AAATCCTGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
453 AAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
**
1114254 ACTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGGCATTGGCATG
518 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
1114319 TAGAAATATGAAGATGTG-CTGAAACCCACCTACCACCCTATCGATCCACTGCTTGAGCATCTCG
583 CAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
1114383 CCTCTCTGGCCGACGTAGAGCCC-GCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
647 TCTCTCTGGCCGACGTAGTGCCCTG----CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * * ** *
1114447 GGAGTTCATTCCCAATCTAAGATCTGATCGGATCGAGGGTTGTGGCAGCAGGATTGACAGCACGC
708 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGACAGCACGC
* ** * * *
1114512 AGAGGGGGACCTGGTCGATCCCTGACTTGCGCATCCCGCCCCTTTGG-CAGCTGAGCGCCCGCAC
773 AGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
1114576 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAG--T--G--TA---
838 GCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* ** *
1114624 AG---------A-TC--AGATC-----GGACCGAGGGTTACGTTAGCACATGCTGTGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
*
1114672 TGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* * * * *
1114737 GATGGTATTGGGGTTCTGGCAATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
131 GACGGCATTGGGGTTCCGACGATCGGGGGGG--GGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
1114802 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCACA-CCCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
1114866 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
1114931 TTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
1114996 AAAAAAATACAAGGATGACGTCTACCAAGTTTTGGACCAAAACTCCTTCCAAAAAAAATTTTAAA
389 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAAATTTTAAA
* * * *
1115061 AAATCCCAAACCATAAAAAG-TTTGAAAATCGTGAAGAATAGAAAACGAGTCATCTTGCCATGAA
453 AAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
**
1115125 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
518 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
1115190 CAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGT
583 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
1115255 CTCAT-TGGCCGACGTAGTGCCCGCCCATCCACCCGCCCGCTCATTCCGTCGGTTGGCTTAGGCA
648 CTC-TCTGGCCGACGTAGT----GCCC-T--GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
* * * * *** *
1115319 TTCGGAGTTCATTCCCAGTCTAAGATCGGACTGAACTAAGGGTTGTAGCAGTAGGATCG-CAAGC
705 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGAC-AGC
* ** ** * * *
1115383 ACGCAGAGGGGGACTCGGTCGATCCCCGACTTGCGCATCCTACCCCTCTGGCCGACTGAGTGCCT
769 ACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * * *
1115448 GCACGCTCGTTTCGTGGGTTGACTTAAGCATACGAAGTTCATTCCTAGTC-AAGCATATGA
834 GCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
1115508 AGTTCATTCCCAGTCTAAGATTGGATTGGACCGAGGGTTACGCCAGCGCATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* ** ** ** *
1115573 AGTGCTGGTGTTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
*
1115638 GACGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
131 GACGGCATTGGGGTTCCGACGATC-GGGGGG--GGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
1115703 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCACA-CCCCTT
193 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
1115767 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
1115832 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGATTTTTTTTGTGCATGAC
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
1115897 AAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
388 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* *
1115962 AAATCCCGAACC-TCAAAAAATTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
453 AAATCCCGAACCAT-AAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
1116026 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGCATTGGCAT
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
1116091 GGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCGTCCCG
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
** **
1116156 TCTCTCT-GCTCGACGTAGTGCCCACCCGTCTGCCCGCCCGCTCGTTTTGTCATTTGGCTTAGGC
647 TCTCTCTGGC-CGACGTAGTG-----CC--CTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGC
* * * * * *
1116220 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCAAGGGTTGCGGCAGCAGGATCGGCAGC
704 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGACAGC
* * ** * * *
1116285 ATGCAGAGGGGGACCCGACCGATCCTCGGGTTACGCATCCCGCCCCTGTGGTCGGCTGAGCGCCC
769 ACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * *
1116350 ACTCGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAG-AT-TGG
834 GCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* *
1116409 A----A----C-G-----GA-C----T-----GAGGGTTGCGACAGCACATGTTGGGCACGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * * *
1116450 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCCCCATCATCGGAGCATCACTGGAGAACCCGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
** ** * *
1116515 GGTGGCATTGGGGTTCCGACGATCGCGGGGCCGGGGGGTGTGCGCACATGATTTGTGATGGGTGC
131 GACGGCATTGGGGTTCCGACGATCG-GGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
1116580 TGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCGAACCTCGAGAACTCACA-CCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
1116644 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* **
1116709 TTTTCAAATGGTCACAACATCTTGTACACTTCGAGTTTTTATTTGAATTTTTTTGTGCATGCCAA
325 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * *
1116774 CAAAAATACAAGGATCATGTCTACCGAGTTTGGGGCCAAAACTCGTTCC-AAAAAAGTTTAAAAA
390 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * ** * *
1116838 ATCTCGAACCACAAAAAGTTTCAAAAATCTTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAC
455 ATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
1116903 TTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
520 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* * * * * *
1116968 TAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGTATCCCATCC
585 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
1117033 CTCTGGCCGGA-GTAGTGCCCGCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAG
650 CTCTGGCC-GACGTAGTG-CC-CTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
** * * * **
1117097 TTCATTCGTAGTCTAAGATCGGATCGAACCAAGGGTTACGGTAGCAGGATCGGTAGCACGCAGAG
712 TTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGACAGCACGCAGAG
* * * * * * * * *
1117162 GGGGACCCGACTGATCCTCGACTTACGCATCCCACCCCTCTAGCCGACTGAGCACCAGCACGCTC
777 GGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTT
* * *
1117227 GTTTTGAGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
842 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* *** ** *
1117280 GGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCGACAGCACATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * * * ** ** *
1117345 CGTGCTGGGGCCGTATTTTTCTTCGTCGGGGTACCATCACCGGAGCATCGTCGGAGAACCTGACT
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* * * *
1117410 GACGGCATTGGGGTTTCGATGATTGGGGCGCCGGTGGGGGGTGTGCGCACATGATGTGTGATGGG
131 GACGGCATTGGGGTTCCGACGATCGGGG-G--GG-GGGGGGTGTGCGCACATGATGTGCGATGGG
* *
1117475 TGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
192 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
1117540 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGAAGCCAGTAAAGTGTCTGAAATGGGGACA
257 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
1117605 CTTTTTTCAAACGGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATG
322 CTTTTTTCAAA-TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
1117670 CCAACAAAAATATAAGGATCATGTCTACCAAGTTTGGGGCCATAACTCCTTCCCAAAAAATTTTA
386 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
**
1117735 AAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
451 AAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
1117800 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCA
516 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
1117865 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTACGCATCCT
581 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
1117930 GTCTCTCTGGCCGACGTAGTG-CCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
646 GTCTCTCTGGCCGACGTAGTGCCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* * *** * * * *
1117994 GTTCATTCCCAGCCTAAGATCAGACCGGATTGAGGGTTGCAGCAGCAGGATCGTCAGCACGCCGA
711 GTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGACAGCACGCAGA
* * * *
1118059 GGGTGACCCGACCGATCCCC-AGCTTGCGCATCCCGCCCTTCTGGCCGGCTGAACGCCCGCACAC
776 GGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
1118123 TTATTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGG
840 TTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
1118178 AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGTGGCAGCACATACTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * **
1118243 TGTGTTGGTGCCGCATTTTTCTTCG-CTAGGGCACCATCGTCGGAGCATTGCCGGAGAACCTGAC
66 TGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
* *
1118307 CGACGGCATTGGGGTTCCTACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
130 CGACGGCATTGGGGTTCCGACGATCGGGGGG-GGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
1118372 CTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCACACCCCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
1118437 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
1118502 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGGTGAATTCTTTTGTGCATGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * *
1118567 ACAAAAATACAAGCATCACGTCTACCAAGTTTGGTGCCAAAACGCCTTCCGTAGAAATTTTAAAA
389 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * *
1118632 AAT-CCAAACCGT-AAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAA
454 AATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
1118695 CTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
519 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* * * * * * *
1118760 AAAAAGATGAACATTTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCACACCCCGTC
584 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* ** *
1118825 TCTCTGGCC-AGCGTAGTGCCC-GCCCGGCCGCCTACCCCTTCGTTTTGTCGGTTGGCTTAGGTA
649 TCTCTGGCCGA-CGTAGTGCCCTG--C--CCG-C--CCGC-TCGTTTCATCGGTTGGCTTAGGCA
* * * * * * * * *
1118888 TACGGAGATCATTGCCAATCTAAGATCGGACCAGACCAAGAGTCATGGTAGTAGGATCGACAGCA
705 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGACAGCA
* * * *
1118953 CGCAGAGGGGGACCC-AGCCGATCCCTGACTTGCGCATCTCGCCCCTCTGGTCGGCTGAGTGCCC
770 CGCAGAGGGGGACCCGA-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * * * *
1119017 GCATGCTAGTTTCGTGGATTGACTTAGGCATACGGAGTTCATTCCTAGTTTAAGCATACGG
834 GCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* ** *
1119078 AGTTCATTCCCAGTCTAGGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * * * * *
1119143 TGTGCTGGTGCCACATTTTTTTTTGTCGAGGCACCATCGCCGGAGCATCAACGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* * * ** *
1119208 GGCGGCATTGGGGTTTC-AGCAATCGGGGGTCCGGGGGGTGTGCGCACATGATGTGCGCTGGGTG
131 GACGGCATTGGGGTTCCGA-CGATCGGGGG-GGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
1119272 CTGGTACTTGGCCCTTAAATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
1119336 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTG-AATGGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
1119400 TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCGTGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
1119465 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCAAAAAAATTTTAAAA
389 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * *
1119530 AATTCTGAACCGTAAAAAGTTTTGAAAATTATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
454 AATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * **
1119595 CTTCACGTGCAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
519 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
*
1119660 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
584 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * ** ** * *
1119725 TCTCTAGCCGACGTAGTGCCCGTCCGCCTGCCCGAC-CGCTTGTTTTCATTTGGTTTAGTCATAC
649 TCTCTGGCCGACGTAGTGCCC-T--GCCCGCCCG-CTCG-TT-TCATCGGTTGGCTTAGGCATAC
* * * * * * * * * * *
1119789 AGAGTTCATTCCTAGTCTATGATAGGACCAGA-CGAGGGTTATGGTAGTAGGTTCGGCAGCACGC
708 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGACAGCACGC
* *
1119853 AGAGGGGGACCC-AGCCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGTGCCCGCA
773 AGAGGGGGACCCGA-CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
1119917 CGCTTGTTTCGTGGGTTGACTTAGGCATACGGATTTCATTCCCAGTCTAAGCATACGG
837 CGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
1119975 AGTTCATTCCTAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * * *
1120040 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCAGAGCATCATCGGAGAACTTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* * * *
1120105 GGCAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGCGCGCACATGATGTGCGATGGGTG
131 GACGGCATTGGGGTTCCGACGATCGGGGGGG--GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
1120170 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCAAGAACTCACACCCCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
1120235 AAGAGCATTTTAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
1120300 TTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
1120365 AAAAAAATACAAGGATCACGTCTACCAAATTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAA
389 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
** * *
1120430 AATCCTAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
454 AATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
1120495 CTTCACGTGAAGGCTTAAGGGACCGTTGTATGAGTTTACAAGCCATACGAAA-GGCATTGGCATG
519 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTGGCATG
* * * *
1120559 CAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGACTTACGCATCCCAT
583 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* ** * *
1120624 CTCTCTGGTCGGTGTAGTGCCC-GCCCGCCCGCCCGCCCACTCGTTCATTTTGTCTGTTGGCTTA
648 CTCTCTGGCCGACGTAGTGCCCTGCCCGCCCGCTCG-----T--TTCA-----TCGGTTGGCTTA
** ** * * * *
1120688 GGCATACAAAGTTCATTCATAGTCTAAGATTGGACGGGACCGAA-GATTACGGCAGCAGAATCGA
701 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC-AAGGGTTACGGCAGCAGGATCGA
* ** * *
1120752 CAGCACGTAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCACCCCTC-GGCCGACTGAGC
765 CAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * *
1120816 GCCCGCATGCTAGTTTCGTGGGTGGACTTAGGCATACGGAGTTCATTCCCAGTC-AAGGCATATG
830 GCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-GCATACG
1120880 G
894 G
* * * *
1120881 AGTTCATTCCCAGTCTAAGATCGG-ATCAGACCGAGGATTGCGACAGCACATGTTGGGCTCAGGC
1 AGTTCATTCCCAGTCTAAGATCGGAAT-GGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
*
1120945 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGTGCATCACCGGAGAACCTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
* * *
1121010 TGGA-GGCATTGGGGTTCC-AGCGATCGGGGGGCTGGGGGGTGTGCACACATGATGTGCGATGGG
130 -CGACGGCATTGGGGTTCCGA-CGATCGGGGGG-GGGGGGGTGTGCGCACATGATGTGCGATGGG
* ** *
1121073 TGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCAT-ATCAAACCTCGAGAACTCATGCTCCC
192 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC-TCATCAAACCTCGAGAACTCACACCCCC
* * *
1121137 TTAAAGAGCATTTGAGATTTTATATGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
256 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
1121202 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATG
321 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
*
1121267 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTGGTAGACGTGATCCTTG
386 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC----T---CCT--TCC--G
* ** * **
1121332 TATTTTTGTTGGCATGTCATGTCTGCCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
440 -A-----------A----A--------AAATTT----TAAAAAATCC---CG-AACCA---TAAA
* * * * * * *
1121397 AAATCTCGAGCCCTAAAAAGT-TTCAAAAATCGTGAAAAGTAGACAAGGAGTCATCTTGCCATGA
470 AAGT-T------TTGAAAA-TCATGAAAAA---T----AG-A-A-AACGAGTCGTCTTGCCATGA
*
1121461 ACCTTCACGTGAAGGCTT-AGGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
517 AACTTCACGTGAAGGCTTAAGGG-ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * *
1121525 CGTAGAAATATGAAGATGTGCTTAAACCCACCTACCACCTTATCGATCCATGGCTTGCGCATCTC
581 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
1121590 GCCTCTCTGGCCGACGTAGTACCC-GCCCGCCCACCTGCTCATTTCATCGGTTGGCTTAGGCATA
646 GTCTCTCTGGCCGACGTAGTGCCCTGCCCG--C-CC-GCTCGTTTCATCGGTTGGCTTAGGCATA
** * ** * * **
1121654 CGGAGTTCATTCATAGTCTAAGATCAGACCAAACCGAGGGTTACGGTAGCAGGATCGGTAGCACG
707 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGACAGCACG
* ** * * * * *
1121719 CAGAGGGGGACCCGACAGATCCTTGGCTTGCGCATCTCGCCCCTTTGACCGGCTGAGCCCCCGCA
772 CAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
1121784 CGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAG--T---C-TA---
837 CGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
*
1121833 AG---ATT----G-----GATC-----GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * * * * *
1121881 TGTGTTGGTGCCGCATTTTCCTTTG-CTGGGGCACTATCATCGGAGCATCGCCGGAGAACCTGAC
66 TGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
* * * * * *
1121945 CGGCGGCATTAGGGTTGCGGCGAT------GGGGGGGGTGTGCGCACATGATGTGTGATGGATGC
130 CGACGGCATTGGGGTTCCGACGATCGGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
** ** * *
1122004 TTTTACTTGGCCCTTATATTGGCCCTTTATCCCTCATCAAACCTCGAGAACTCACA-CCCTTTAT
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
***** * * ** * * * * *
1122068 CCCTTATATTG-GCCCTTATATTGGCCCTTAAAG-TGCCAGTAGCCAGTAGCCAGTAGCCAGTAC
260 AGAGCAT-TTGAG--ATTTTACAGG---TT--TGCTGCCAGTAGCCATTA--AAGT-GTCTG-A-
**** ** * *
1122131 ACATTGAGTTTTTAGCTGTTTTGTGC--ATGG-CAACAAAAATACAAGGATCACGTCTACCAAGT
312 A-A-TG-G-GGACA-CT-TTTT-T-CAAATGGTC-AC-AAAAT-CTTGTA-CAC-T-T--CGAGT
** * ** ** * *** ****** ** * * *
1122193 TTGGGATCAAAACTCCTTTCGAAAAAATTTTAAAAAAT-C-CCGAAC-CG-CTA-AAAGTTT--T
361 TT-TTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * ** * *** * * **
1122251 G--AAAA-T-CGT--G-AAAGA-TAGAAAACGAGTCACCTTGCCAT-GAAACTTCATGTG-AAGG
424 GCCAAAACTCCTTCCGAAAAAATTTTAAAA--AATC-CCGAACCATAAAAAGTT--T-TGAAAAT
* ** * * * * * *** **** **
1122306 C-T----TA-AG-GGACCA-TTGT-GTG-AATTTAAAAGCCATAAAAATGG--TATTGG-CACAT
483 CATGAAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACGTGAA-GGCTTAAGGGAC-CAT
* * *** ** * ** ** ** ** *
1122358 AGAAATATGAA--GATGTGCC-T--AAA-CCCACCTACCACCCTATCAAT-CCACAGCT-TGCGC
545 TG---TATGAATTTACAAGCCATAAAAATGGCA-TTGGCATGC-AGAAATATGA-AGATGTGC-C
* * * * ** ** ** * ** *
1122415 --ATCCCGTCTCT-CTAGCCGGT-GTAGTGCC-C-GCCCGC-CCGCCCGCCTGCT-TGTTTCGTC
603 TAAACCC-AC-CTACCACCCTATCG-A-T-CCACGGCTTGCGCATCCCGTCT-CTCTG-GCCGAC
* * * * *** ** * * ** ** * *
1122472 G--GTTGGCTTACGCATACG-GAG-TTCATTCCCAGTCTAAGAGT-GGACCGGACCGAGGGTTGA
661 GTAG-TGCCCTGCCCGCCCGCTCGTTTCA-T--CGGT-T-GGCTTAGG--CATA-CG-GAGTTCA
* * * * * ** * *
1122532 GGT---AG-C-AGGATC-GACAGCA-CATAGAGG----GGGA-CTCGATCGATC--C-C-CGGCT
716 -TTCCCAGTCTAAGATCGGACCGGACCA-AG-GGTTACGGCAGCAGGATCGA-CAGCACGCAG-A
* *** ** * * * * * ** * ****
1122581 TGCTCATCCC-ACCCCTCTGGCCGGC-TGAGCA-CCCGCACGCTCATTTCGTGGGTTGA-TTTAC
776 GGGGGA-CCCGACCGATC--CCCGACTTGCGCATCCCGC-C-C-C-TCTGGCCGGCTGAGCGCCC
* ** * ** ** * * *
1122642 GTATACG-GAG-TTCATTCGCAGTC-TAAGCATACAGAGTTCATTCCCAGTCTAAG-AT-C--
834 G--CACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * ** *
1122698 AG---------A--C-----T-GG-AT----CAAGGGTTGGGGCAGCATTTGCTGGGTTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * * **
1122741 TGCGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCG-CTGGAACATCGTCGGAGAACCTGAC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCACCGGAGAACCTGAC
* * * *
1122805 CGATGGCATTGGGGTTCCGACGATTAGGGGGGCCGGGGGGTGTGCGCAAATGATGTGCGATGGGT
130 CGACGGCATTGGGGTTCCGACGA-TCGGGGGG-GGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
1122870 GCTGGTACTTGGCCTTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTT
193 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
1122935 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-GCAATTAAAGTGTCTGAAATGGGGACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
1122999 TTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * ** * *
1123064 AAAAAAAATACAAGGATCATGTCTACAAAGTTAAGGGCCAAAACTCCATCCAAAAAAATTTTAAA
388 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
** ** *
1123129 AAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
453 AAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
1123194 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATG
518 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
1123259 TAGAAATATGAATATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
583 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * ** *
1123324 CTCTCTGGCCGAAGTAGTGCCC-GTCCGATCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
648 CTCTCTGGCCGACGTAGTGCCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
* * *** * * * * * * *
1123388 TCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCAGCAGTAAGATC-AGTAGCATGCAGAA
713 TCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGA-CAGCACGCAGAG
* * * * ** *
1123452 GGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGTCGGCTGAGCGCCCATACGCTC
777 GGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTT
1123517 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
842 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * * *
1123570 AGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGC-AGCAACACAT-CTGGGCTTGGGC
1 AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGC
* *
1123633 ATGTGCTGGTGCCATC-TTTTTCTTCGTTGGGGCACCA---TC---G-----CCGGAGAACCTGA
65 ATGTGCTGGTGCC-GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGA
* * * * * *
1123686 CCAACGACATTGGGGTTTCGACGAT-GAGGGTGCCGGAGGTGTGTGCGCACATGATGTGCGATGG
129 CCGACGGCATTGGGGTTCCGACGATCG-GGG-G-GGGGGGGGTGTGCGCACATGATGTGCGATGG
* *
1123750 GTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACACCCCC
191 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
1123815 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTTTGAAATGGGGAC
256 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
1123880 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTATTTGTGCATG
321 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * ** * **
1123945 GCATAAAAAATACAAGGATCGTGTCTACCAAGATAAGGGCCAAAACTCCTTCCGAAAAAATTTTA
386 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
*** * ** ** * * * *
1124010 AAAAATTTTGAATCGCAAAAAGTTTCCAAAATCTTGAAAAATAAAAAACGAGTCATCTTGCCTTG
451 AAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
1124075 AAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGCCA
516 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * *
1124140 TGTAGAAATATGATGATGTGCCTAAACCCACCTGCCACCCTATCGATCCTCGGCTTGTGCATCTC
581 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
1124205 GTCACTCTGGCCGACATTGTG-CCTGCCCGCCCGCCCGCTCATTCGTCGGTTGGCTTAGGCATAC
646 GTCTCTCTGGCCGACGTAGTGCCCTGCCCGCCCGCTCG-T--TTCATCGGTTGGCTTAGGCATAC
* * * * * ** * *
1124269 AGAGTTCATTCCCAGTCTGAGATCAGACTGGACTGAA-GGTTGTGGCAGCAGGATCGGCAGCACA
708 GGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-CAAGGGTTACGGCAGCAGGATCGACAGCACG
** * * * * *
1124333 CAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGTCCGTA
772 CAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
** *
1124398 CGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
837 CGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* ** * * * * *
1124456 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTTGAGCA
1 AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
** **
1124521 TGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
** * * * *
1124586 GACGGCATTAAGATTCCGATGATCGGGGGGGCCGGGGGGGATGGGCGCACATGATGTGCGATGGA
131 GACGGCATTGGGGTTCCGACGATC-GGGGGG--GGGGGGG-TGTGCGCACATGATGTGCGATGGG
** *
1124651 TGCTGGTACTTGGCCCTTATGCTGGCCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
192 TGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
1124716 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGAC
256 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
**
1124781 ACTTTTTTCAAATGGTCACAAAAAATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
321 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
** * * * *
1124846 CCAACCAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAGCACCTTCTGAAAAAATTTTA
386 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* ** ** * *
1124911 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATG
451 AAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
1124976 AAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCAATGGCA
516 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
1125041 TGCAAAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATACACAGCTTGCGCATCCC
581 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
1125106 GCCTCTCTGGCCGGCATAGTGCCC-GCCCACCTGTCCGTCCGCTCGTTTCGTCGGTTGGCTTAGG
646 GTCTCTCTGGCCGACGTAGTGCCCTG--C-CC-G--C--CCGCTCGTTTCATCGGTTGGCTTAGG
* * * * * * *
1125170 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTAGCAGGATTGTCAG
703 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGACAG
* * * * * * * * *
1125235 CATGCAGAGTGAGATCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCACC
768 CACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
1125300 CGCACACTCGTTGCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--
833 CGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
1125358 AG---------A--C------C---A--GACCGAGGGTTGTGGCAGCCCATGCTGGGCTCAGGCA
1 AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * * * ** ** *
1125401 TGTGCTGGTGTCGTATTTTTCTTTGTCGGGTCACCATCACCGGAGCATTGCCGGAAAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* * *
1125466 GGCGGCATTGGGGTTCTGGCGATCGAGGGGGCCGGGCGGGGTGTGCGCACATGATGTGCGATGGG
131 GACGGCATTGGGGTTCCGACGATCG-GGGGG--GGG-GGGGTGTGCGCACATGATGTGCGATGGG
* *
1125531 TGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCT
192 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
1125596 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
257 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
1125661 CTTTTTTCAAATGGTCACAAAATCTTTTACACTTCTAGTTTTCAGCTGAATTTTTTTGTCCATGC
322 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
1125726 CAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAA
387 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* ** * ** *
1125791 AAAATCTCGAACCGCAAAATGTTTCCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAA
452 AAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
1125856 AACTTCATGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCAC
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
1125921 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCA
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
1125986 TCTCT-TAGGGCGGCGTAGTGCCCGTCTGCCCGCCCACCCGCTCATTTCATCGGTTGGCTTAGGC
647 TCTCTCT-GGCCGACGTAGTG-CC--CTGCCCG----CCCGCTCGTTTCATCGGTTGGCTTAGGC
* ** * * * * * *** * * ***
1126050 TTATAGAGTTCATTCCCAGTCTAACATCAGACCGGACTACGAGTTTTTAGCTGAATTTTTCCTTG
704 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAG-GGTTACGGCAGCA-GGAT-C--G
* ** * ** * * * * * * ** * ***
1126115 TGCATGCCACAAATATACAAGGAACACGTCCAAT--CAGACTAGACAAAGGGTTACGGCAGCAGG
764 -ACA-G-CAC--GCAGA-GGGGGACCCGACCGATCCCCGACTTG-C----GCAT-C--CCGCCCC
** ** * * * * ** * *
1126178 AATGGTAGCTCGTAGAGGGGGACCCGACAATC-CTCGACTT-GTGCATCCAGCCCCTCT-GGCCA
815 TCTGGCCG-GC-T-GA--GCG-CCCG-C-A-CGCTTG-TTTCGTGGGT--TG--ACT-TAGG-CA
* * * * * ** *
1126240 -GCTGAG--CA-CCCCACTCT-CGTTTTCGTG
864 TACGGAGTTCATTCCCAGTCTAAGCATACG-G
* * * * * ** * ** * * *
1126267 GGTTGACTT---AGGC--ATAT-GGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGT
1 AGTTCA-TTCCCAGTCTAAGATCGGAATGGA--CCGAGGGT-TGC-GAC--AG--CA--CAT-G-
** * * * * ** * ** *** * *
1126326 CTAAGATCAGACCGGACTAAGGGTTGCGACACCACA-TGCTGGGCCTC-GGG---CAT-GTGCTG
53 CTGGGCTC-G---GG-C-ATGTGCTG-G-TGCCGCATTTTTCTTCGTCGGGGCACCATCGT-CGG
* * ** * * ***** *** * *****
1126385 -G--T-GCCGTAGTTTTCTTTG-CCG-GGGCACCAACG--CCGAAAC-ATC-CACGGAGAACCTT
109 AGCATCACCGGAG--AAC-CTGACCGACGGCATTGGGGTTCCG--ACGATCGGGGGGGGGGGGGT
* * * *
1126440 AT-CGGCGACATTGGGGTTTCGACGATCGGGGGAGCTGGGGGGTGTGTGCACATGATGTGCAATG
169 GTGC-GC-ACA-T--GATGT-G-CGAT---GGGTGCT-----------------G--GT---A--
*
1126504 GGTGCTGGTATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
200 ----C-----TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
1126569 TTAAAGAGCATTTGAGATTTTACAGGTTTGGC-GCCAGTAGCCATTAAAGTGTCTGAAATTGGGA
256 TTAAAGAGCATTTGAGATTTTACAGGTTT-GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
1126633 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTAGAGCAT
320 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
1126698 GCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAACTCCATCTGAAAAAATTTT
385 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
** ** ** * *
1126763 AAAAAATTTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAGTAGAAAATGAGTCGTCTTGCCAT
450 AAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
1126828 TAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAA-CAGATAAAAATGGCATTGG
515 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAAATGGCATTGG
** *
1126892 CACACAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
579 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
1126957 CCGTCTTTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCCCTCGTTTCGTCGGTTGGCTTAG
644 CCGTCTCTCTGGCCGACGTAGTG--C-CCTGCCCGCCCG----CTCGTTTCATCGGTTGGCTTAG
** * * * * *
1127022 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAACAGGATAGGCA
702 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGACA
* * ** * *
1127087 GCACGTATAGGGGGACCCGGTCGAT-CCCTAGCTTGCGCATCCCGCCCCCTCTGGCCGGCTGAAC
767 GCACGCAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCG-CCCCTCTGGCCGGCTGAGC
* * * *
1127151 GCCCGCACACTCGTTTCGTGGGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
830 GCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * *
1127216 AGTTCATTCCCAGTCTATGATCGG-ATCGGACCAAGGGTTGCGGCAGCACATGCTAGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCGGAAT-GGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
* * * *
1127280 ATGTGCTGGTGTCACTTTTTTCTTCG-CTAGGGCACCATCG-CTGGAGCATCACCGGAGAACCTG
65 ATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTC-GGAGCATCACCGGAGAACCTG
* * *
1127343 ACCGACGGCATTAGGGTTCCGGCGATTGGGGGCGCCAGGGGGGGTGTGCGCACATGATGTGCGAT
128 ACCGACGGCATTGGGGTTCCGACGATCGGGGG-G---GGGGGGGTGTGCGCACATGATGTGCGAT
* *
1127408 GGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATAAAACCTCGAGAACTCACACCC
189 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * **
1127473 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTGGCCAACAAAGTGTCTGAAATGGGG
254 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
1127538 ACACTTTTTTCAAATGGTCACAAAATCATCTACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCA
319 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
*
1127603 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
384 TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * ** * ** * *
1127668 TAAAAAATCTCTAACCGCAAAATGTTTCCAAAATCGTGAAAAATAGAAAACGTGTCGTCTTGCCA
449 TAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
1127733 TGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
514 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
1127798 CACGTAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTGCGCATC
579 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* ** * * *
1127863 CTGTCTCTCTTACCAACGTAGTACCCGCCC-GCCTGCCCGCTCGTTTCGTC-GTTGGCTTAGGCA
644 CCGTCTCTCTGGCCGACGTAGT----GCCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCA
* * * *
1127926 TAGGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATTGACAGCA
705 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGACAGCA
* * * * * *
1127991 CGTAGAGGGGGACCTGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCG
770 CGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
** * * * *
1128056 CACGCTCATTTCATGGTTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAACCATACGG
835 CACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
1128116 AGTTCATTCCAAGTCTAAGATCGG-AT----C-A-------G---G--CATGCTAGGCTCAGGCA
1 AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * * * * * * ** *
1128163 TGTGCTAGTGTCACTTTTTTATTCGCCAGGGCACCATCACCGGAGCATCACCAGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* *
1128228 GACGACATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
131 GACGGCATTGGGGTTCCGACGATCGGGGGGG--GGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
1128293 CTGGTACTTGGCCCTTATATAT--TCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
194 CTGGTACTTGGCCCTTATAT-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
1128356 AAAGAGCATTTAAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
1128421 TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGCTTTTAGCTGATTTTTTTTGTGCATGCC
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * * *
1128486 AACAAAAACAAAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCAAAAAAATTTTAAA
388 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* ** *
1128551 AAATCCTGAACTGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
453 AAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
1128616 ACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATC
518 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*** * * *
1128681 CAGAAATATGAAGATGTGGAAAAACCCACCTACCACCCTATCGATCCACGGGTTGTGCATCCCAT
583 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
1128746 CTCTCTAGCCGGCGTAGTGCCCGCCAGCCTGCCCGCCCGCTCGTTTCGTCGGTTAGCTTAGGCAT
648 CTCTCTGGCCGACGTAGT----G-C--CCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * * ** ** ** * * * * * *
1128811 ACGGAGTTCATTCCCTGTCTAAGATTGGATCAAACTGAGGGTTGTGGTACCAGGATTGGCAGTAG
706 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGACAGCAC
* * * * * ** * ** *
1128876 GCAGATGGGGACCCGACCAATCCCCGAATTACGCATCCCACCCCTCTGGATGACTGAGCGCTTGG
771 GCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
** * * *
1128941 ACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCAAAGCATACGA
836 ACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* *** * *
1129000 AGTTCATTCCCAGTCTAAGATCTGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* * * * **
1129065 TGTGCT-ATACCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
* ** *
1129129 GGCGGCATTGGGGTTCCGACGATCTGGGGGATCGGGGGGTGTGCGCACAAGATGTGCGATGGGTG
131 GACGGCATTGGGGTTCCGACGATC-GGGGG-GGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
1129194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACACCCCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
1129259 AGGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
1129324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATCCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
** * * *
1129389 AAAAAAATACAAGGATCATATCTACCATGTTTGGGGCCAAAACCCCTTCCAAAAAAATTTTAAAA
389 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
** * ** ** * * *
1129454 AATCCCGAACCGCAAAACGTTTCAAAAATTGTAAAAAATAGAAAACAAGTCATCTTGCCATGAAA
454 AATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * ** * *
1129519 CTTCACGTGAAGGCTTAAAGGACCATTATATGAATTTACAAGCCATAAAAATATCATTGGCACGT
519 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* ** * * **
1129584 AGAAATATGAAGATGTGGCTAAACCCACCTAGTACCCTATCGATCAATGGCTTGCGCATCCAATC
584 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * * * *
1129649 TCTCTGGTCGGCATAGTGCCTGCCCGCCCGCCCGCTCGTTCCGTCGGTTGGCTTAGCCATGCGGA
649 TCTCTGGCCGACGTAGTG-C--CCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* * * * * * *
1129714 GTTCATTCCCAGTCTAAGATCAGACTGGATCAAGGGTTGCAGTAGCAGGATCG-CTAGCACGCGG
711 GTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGAC-AGCACGCAG
* ** * * * *
1129778 AGGGGGACCCAATTGATTCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTAAGCGCCCGCACGC
775 AGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
*
1129843 TTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG-AT-C-G
840 TTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
1129895 -G---------A--C------C---A--GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCT
1 AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
* ** **
1129937 TGTGCTGGTGCCACATTTTTCTTC-TCCGGGGCACCATCACCGGAGCATCACCACAGAACCTGAC
66 TGTGCTGGTGCCGCATTTTTCTTCGT-CGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
* * * *
1130001 TGGCGGCATTGTGGTTCCGACGATCGTGGGGGCCGGGGGGTGT--GCACATGATGTGCGATGGGT
130 CGACGGCATTGGGGTTCCGACGATCG-GGGGG-GGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
1130064 GCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCGCACCCCCTT
193 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
1130129 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGAGAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
1130194 TTTTTACAAATGGTCACAAAATCTTGTACACGTCGAGTTTTTAGCTGAATTTTTTTATGCATTCC
323 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * *
1130259 AACAAAAATACAAGGATCACGTCTAACAAG-TTGGGGACCAAACCCCCTTCCGAAAAAATTTGAA
388 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACTCCTTCCGAAAAAATTTTAA
* * * * *
1130323 AAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT-GTCCTACCATGA
452 AAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
1130387 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
1130429 GGTTTGCTGC
Statistics
Matches: 13073, Mismatches: 2013, Indels: 1448
0.79 0.12 0.09
Matches are distributed among these distances:
842 13 0.00
843 5 0.00
844 9 0.00
845 1 0.00
846 4 0.00
847 7 0.00
848 3 0.00
849 4 0.00
850 6 0.00
851 14 0.00
852 4 0.00
853 7 0.00
854 6 0.00
855 10 0.00
856 5 0.00
857 8 0.00
858 14 0.00
859 21 0.00
860 143 0.01
861 29 0.00
862 34 0.00
863 68 0.01
864 90 0.01
865 59 0.00
866 60 0.00
867 56 0.00
868 225 0.02
869 341 0.03
870 134 0.01
871 481 0.04
872 84 0.01
873 85 0.01
874 203 0.02
875 396 0.03
876 56 0.00
877 107 0.01
878 2 0.00
879 886 0.07
880 223 0.02
881 16 0.00
882 263 0.02
883 367 0.03
884 195 0.01
885 6 0.00
886 230 0.02
887 48 0.00
888 6 0.00
889 7 0.00
890 13 0.00
891 3 0.00
892 182 0.01
893 57 0.00
894 135 0.01
895 273 0.02
896 27 0.00
897 292 0.02
898 848 0.06
899 283 0.02
900 1117 0.09
901 987 0.08
902 1076 0.08
903 9 0.00
904 16 0.00
905 270 0.02
906 858 0.07
907 65 0.00
908 11 0.00
909 11 0.00
910 1 0.00
911 1 0.00
912 3 0.00
914 3 0.00
916 3 0.00
917 2 0.00
918 1 0.00
920 2 0.00
922 1 0.00
926 1 0.00
927 9 0.00
928 86 0.01
929 9 0.00
930 1 0.00
931 1 0.00
932 9 0.00
933 19 0.00
934 9 0.00
935 113 0.01
936 17 0.00
937 12 0.00
938 20 0.00
939 16 0.00
940 18 0.00
941 17 0.00
942 21 0.00
943 13 0.00
944 37 0.00
945 16 0.00
946 18 0.00
947 6 0.00
948 22 0.00
949 22 0.00
950 16 0.00
951 22 0.00
952 16 0.00
953 17 0.00
954 3 0.00
955 4 0.00
956 2 0.00
957 3 0.00
958 18 0.00
959 3 0.00
960 106 0.01
961 58 0.00
963 10 0.00
964 7 0.00
965 9 0.00
966 4 0.00
967 10 0.00
968 151 0.01
969 2 0.00
970 5 0.00
971 2 0.00
972 4 0.00
973 7 0.00
974 485 0.04
975 5 0.00
976 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
AGTTCATTCCCAGTCTAAGATCGGAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACC
GACGGCATTGGGGTTCCGACGATCGGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGACGTAGTGCCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACGGCAGCAGGATCGACAGCACGCAGAGGGGG
ACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
Found at i:1119970 original size:26 final size:26
Alignment explanation
Indices: 1119941--1119993 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1119931 GTTGACTTAG
*
1119941 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1119967 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1119993 G
1 G
1119994 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1120874 original size:26 final size:26
Alignment explanation
Indices: 1120845--1120895 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1120835 GGGTGGACTT
1120845 AGGCATACGGAGTTCATTCCCAGTCA
1 AGGCATACGGAGTTCATTCCCAGTCA
*
1120871 AGGCATATGGAGTTCATTCCCAGTC
1 AGGCATACGGAGTTCATTCCCAGTC
1120896 TAAGATCGGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (26 bp):
AGGCATACGGAGTTCATTCCCAGTCA
Found at i:1122085 original size:12 final size:12
Alignment explanation
Indices: 1122068--1122097 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
1122058 CACCCTTTAT
1122068 CCCTTATATTGG
1 CCCTTATATTGG
1122080 CCCTTATATTGG
1 CCCTTATATTGG
1122092 CCCTTA
1 CCCTTA
1122098 AAGTGCCAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.17, C:0.30, G:0.13, T:0.40
Consensus pattern (12 bp):
CCCTTATATTGG
Found at i:1122114 original size:7 final size:7
Alignment explanation
Indices: 1122102--1122129 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
1122092 CCCTTAAAGT
1122102 GCCAGTA
1 GCCAGTA
1122109 GCCAGTA
1 GCCAGTA
1122116 GCCAGTA
1 GCCAGTA
1122123 GCCAGTA
1 GCCAGTA
1122130 CACATTGAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.29, T:0.14
Consensus pattern (7 bp):
GCCAGTA
Found at i:1122680 original size:26 final size:26
Alignment explanation
Indices: 1122644--1122694 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1122634 TGATTTACGT
* *
1122644 ATACGGAGTTCATTCGCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
1122670 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
1122695 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:1123567 original size:26 final size:26
Alignment explanation
Indices: 1123536--1123588 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1123526 GTTGACTTAG
*
1123536 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1123562 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1123588 G
1 G
1123589 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1124451 original size:26 final size:26
Alignment explanation
Indices: 1124422--1124474 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1124412 GTTGACTTAG
1124422 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1124448 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1124474 G
1 G
1124475 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1127219 original size:26 final size:26
Alignment explanation
Indices: 1127182--1127232 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1127172 GTAGACTTAG
*
1127182 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1127208 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
1127233 TGATCGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1128113 original size:26 final size:26
Alignment explanation
Indices: 1128083--1128133 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1128073 TTGACTTAGG
*
1128083 CATACAGAGTTCATTCCCAGTCTAAC
1 CATACAGAGTTCATTCCAAGTCTAAC
*
1128109 CATACGGAGTTCATTCCAAGTCTAA
1 CATACAGAGTTCATTCCAAGTCTAA
1128134 GATCGGATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCAAGTCTAAC
Found at i:1129652 original size:902 final size:901
Alignment explanation
Indices: 1122149--1130428 Score: 8901
Period size: 879 Copynumber: 9.2 Consensus size: 901
1122139 TTTTTAGCTG
* ** *
1122149 TTTTGTGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGATCAAAACTCCTTTCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * ** *
1122214 AAAAAATTTTAAAAAATCCCGAACCGCTAAAAGTTTTGAAAATCGTGAAAGATAGAAAACGAGTC
66 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
** * * *
1122279 ACCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTGTGAATTTAAAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
1122344 TGGTATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACAGC
196 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
1122409 TTGCGCATCCCGTCTCTCTAGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCTGCTTGTTTCGTCGG
261 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCG-CCGCCCGCCCGCTCGTTTCGTCGG
* * *
1122474 TTGGCTTACGCATACGGAGTTCATTCCCAGTCTAAGAGT-GGACCGGACCGAGGGTTGAGGTAGC
324 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGGACCGAGGGTTGCGGTAGC
* * ** * * *
1122538 AGGATCGACAGCACATAGAGGGGGACTCGATCGATCCCCGGCTTGCTCATCCCACCCCTCTGGCC
388 AGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
1122603 GGCTGAGCACCCGCACGCTCATTTCGTGGGTTGATTTACGTATACGGAGTTCATTCGCAGTCTAA
453 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * **
1122668 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCAAGGGTTGGGGCAGCATTTGCTGGG
518 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * *
1122733 TTCGGGCATGCGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCTGGAACATCGTCGGAGA
583 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
1122798 ACCTGACCGATGGCATTGGGGTTCCGACGAT-TAGGGGGGCCGGGGGGTGTGCGCAAATGATGTG
648 ACCTGACCGACGGCATTGGGGTTCCGACGATCT-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
1122862 CGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCAC
712 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1122927 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT-GCAATTAAAGTGTCTGAAAT
777 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
1122991 GGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTT
842 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * ** * *
1123051 TTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACAAAGTTAAGGGCCAAAACTCCATCCA
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
1123116 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
66 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
1123181 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
1123246 AGGCATTGGCATGTAGAAATATGAATATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGC
196 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * **
1123311 TTGCGCATCCCGTCTCTCTGGCCGAAGTAGT----G-C-CCGTCCGATCGCTCGTTTCGTCGGTT
261 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCGCCCGCTCGTTTCGTCGGTT
* ** * * * *
1123370 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCAGCAGTAAG
326 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGG
** * * * * *
1123435 ATCAGTAGCATGCAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCTCTCTGGTCGGC
391 ATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
** *
1123500 TGAGCGCCCATACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
456 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* ** * * * *
1123565 TACGGAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGCAGCAACACAT-CTGGGCTT
521 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
*
1123629 GGGCATGTGCTGGTGCCATC-TTTTTCTTCGTTGGGG---CA----C----CATCGCCGGAGAAC
586 GGGCATGTGCTGGTGCCA-CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
* * * * *
1123682 CTGACCAACGACATTGGGGTTTCGACGA--TGAGGGTGCCGGAGGTGTGTGCGCACATGATGTGC
650 CTGACCGACGGCATTGGGGTTCCGACGATCTG-GGGGGCCGG-GGGGTGTGCGCACATGATGTGC
* *
1123745 GATGGGTGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCACA
713 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
1123810 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTTTGAAATG
778 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
1123875 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTT
843 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * ** * **
1123934 ATTTGTGCATGGCATA-AAAAATACAAGGATCGTGTCTACCAAGATAAGGGCCAAAACTCCTTCC
1 TTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * * *
1123998 GAAAAAATTTTAAAAAATTTTGAATCGCAAAAAGTTTCCAAAATCTTGAAAAATAAAAAACGAGT
65 GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * * *
1124063 CATCTTGCCTTGAAACTTCACGTGAAGGCTCAAGGGACCATTGTATGAATTTACAAGCCTTAAAA
130 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * *
1124128 ATGGCATTGCCATGTAGAAATATGATGATGTGCCTAAACCCACCTGCCACCCTATCGATCCTCGG
195 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * * *
1124193 CTTGTGCATCTCGTCACTCTGGCCGACATTGTGCCTG-C-CCGCCCGCCCGCTC-ATTCGTCGGT
260 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * * *
1124255 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTGAGATCAGACTGGACTGAAGGTTGTGGCAGCAG
325 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAG
* * * * *
1124320 GATCGGCAGCACACAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCGG
390 GATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
1124385 CTGAGCGTCCGTACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
455 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
1124450 ATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCACATGCTGGGCT
520 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * ** * *
1124515 TGAGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
585 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
** * * * *
1124580 CTGACCGACGGCATTAAGATTCCGATGATCGGGGGGGCCGGGGGGGATGGGCGCACATGATGTGC
650 CTGACCGACGGCATTGGGGTTCCGACGATCTGGGGGGCC-GGGGGG-TGTGCGCACATGATGTGC
* ** *
1124645 GATGGATGCTGGTACTTGGCCCTTATGCTGGCCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
713 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1124710 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
777 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
**
1124775 GGGGACACTTTTTTCAAATGGTCACAAAAAATTGTACACTTCGAGTTTTTAGCTGAATTT
842 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
1124835 TTTTGTGCATGCCAACCAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAGCACCTTCTG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
1124900 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTC
66 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
1124965 GTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * * * *
1125030 TGGCAATGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATACACAGC
196 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
1125095 TTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCACCTGTCCGTCCGCTCGTTTCGTCGG
261 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCC-GCCCGCCCGCTCGTTTCGTCGG
* * *
1125160 TTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTAGCA
324 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCA
* * * * * * * *
1125225 GGATTGTCAGCATGCAGAGTGAGATCCGACCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCG
389 GGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * *
1125290 ACTGAGCACCCGCA----CA---C-T-CGTTG-C----G--T--GG-GTTGA----C--T-TAGG
454 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* *
1125329 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCCCATGCTGGGC
519 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * ** * * * * *
1125394 TCAGGCATGTGCTGGTGTCGTATTTTTCTTTGTCGGGTCACCATCACCGGAGCATTGCCGGAAAA
584 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * *
1125459 CCTGACCGGCGGCATTGGGGTTCTGGCGATC-GAGGGGGCCGGGCGGGGTGTGCGCACATGATGT
649 CCTGACCGACGGCATTGGGGTTCCGACGATCTG-GGGGGCC-GG-GGGGTGTGCGCACATGATGT
*
1125523 GCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
711 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
1125588 CACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
776 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
1125653 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCTAGTTTTCAGCTGAATTT
841 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
1125714 TTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACACCTTCCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
1125779 AAAAAATTTTAAAAAATCTCGAACCGCAAAATGTTTCCAAAATCATGAAAAATAGAAAACGAGTC
66 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
1125844 GTCTTGCCATAAAACTTCATGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
1125909 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
196 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * *
1125974 TTGCACATCCCATCTCT-TAGGGCGGCGTAGTGCCCGTCTGCCCGCCCACCCGCTCATTTCATCG
261 TTGCGCATCCCGTCTCTCT-GGCCGGCGTAGTGCCCG-CCG-CCGCCCGCCCGCTCGTTTCGTCG
* ** * ** *
1126038 GTTGGCTTAGGCTTATAGAGTTCATTCCCAGTCTAACATCAGACCGGACTACGAGTTTTTAGCTG
323 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC--CGAG-GGTT-GCGG
* ****** * *** * *** *
1126103 AATTTTTCCTTGTGCATGCCACAAATATACA-AGGAACACGTCCAATCAGACTAGACAAAGGGTT
384 TA-GCAGGATTG-GCA-G-CAC------GCAGAGGGGGAC--CCGATC-GA-T---CCCCGGCTT
* * * *** * * * * **
1126167 ACGGCA-GCAG-GAATGGTAGCTC-G-TAGAGGGGGACCCGACAATC-CTCGACTT-GTGCATCC
432 GC-GCATCCCGCCCCT-CTGGC-CGGCT-GA--GCG-CCCG-C-A-CGCTC-ATTTCGTGGGT--
* * * * * * * ** * * * ** *
1126226 AGCCCCTCT-GGCCA-GCTGAG--CA-CCCCACTCT-CGTTTTCGTGGGTTGACTTAGGCA-TAT
484 TG--ACT-TAGG-CATACGGAGTTCATTCCCAGTCTAAGCATACG-GAGTTCA-TT-CCCAGTCT
* * ** * * * ** * * * ** * *
1126284 GGAGTTCATTCCCAG-TCTAAGCATAC-GAAGTTCATTCCTAGTCTAAGATCAGACCGGACTAAG
542 -AAGATCA-GACCAGACCGAGGGTTGCGGCAG--CA--CAT-G-CTGGGCTC-G---GG-C-ATG
* * ** ** *** * ** * * ** *
1126347 GGTTGCGACACCACA-TGCTGGGCCTC-GGGCA-TGT-G-CTG-G--T-GCCGTAGTTTTCTTTG
593 TGCTG-G-TGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG--AAC-CTG
* ***** * *** *** * **
1126403 -CCG-GGGCACCAACG--CCGAAAC-ATCCACGGAGAACCTTATCGGCGACAT-TGGGGTTTCGA
653 ACCGACGGCATTGGGGTTCCG--ACGAT-C-TGG-GGGGC----CGG-GGGGTGT-GCG-CAC-A
* * *
1126462 CGATCGGGGGA-GCTGGGGGGTGTGTGCACATGATGTGCAATGGGTGCTGGTATTGGCCCTTATA
705 TGAT-GTGCGATG--GG--------TG--C-TG--GT---A------C-----TTGGCCCTTATA
*
1126526 TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
740 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
1126591 CAGGTTTGGC-GCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAA
805 CAGGTTT-GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
1126655 AATCTTGTACACTTCGAGTTTTTAGCTGAATTT
869 AATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * *
1126688 TTTAGAGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAACTCCATCTG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
1126753 AAAAAATTTTAAAAAATTTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAGTAGAAAATGAGTC
66 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
1126818 GTCTTGCCATTAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAA-CAGATAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC-CATAAAA
** *
1126882 ATGGCATTGGCACACAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
195 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
1126947 CTTGCGCATCCCGTCTTTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCCCTCGTTTCGTCG
260 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCG-CCGCCCGCCCGCTCGTTTCGTCG
* ** * *
1127012 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCGGCAAC
323 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGC
* * * * **
1127077 AGGATAGGCAGCACGTATAGGGGGACCCGGTCGATCCCTAGCTTGCGCATCCCGCCCCCTCTGGC
388 AGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCG-CCCCTCTGGC
* * * *
1127142 CGGCTGAACGCCCGCACACTCGTTTCGTGGGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTA
452 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
1127207 AGCATACGAAGTTCATTCCCAGTCTATGATCGGATCGGACCAAGGGTTGCGGCAGCACATGCTAG
517 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
1127272 GCTCGGGCATGTGCTGGTGTCACTTTTTTCTTCG-CTAGGGCACCATCGCTGGAGCATCACCGGA
582 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGA
* *
1127336 GAACCTGACCGACGGCATTAGGGTTCCGGCGAT-TGGGGGCGCCAGGGGGGGTGTGCGCACATGA
646 GAACCTGACCGACGGCATTGGGGTTCCGACGATCTGGGGG-GCC--GGGGGGTGTGCGCACATGA
* *
1127400 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATAAAACCTCGAGAAC
708 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * **
1127465 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTGGCCAACAAAGTGTCTG
773 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
1127530 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCATCTACACTTTGAGTTTTTAGCTGAATTG
838 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
1127594 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
1127659 AAAAAATTTTAAAAAATCTCTAACCGCAAAATGTTTCCAAAATCGTGAAAAATAGAAAACGTGTC
66 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
1127724 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
1127789 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGC
196 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** ** * *
1127854 TTGCGCATCCTGTCTCTCTTACCAACGTAGTACCCG-C-CCGCCTGCCCGCTCGTTTCGTC-GTT
261 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCGCCCGCTCGTTTCGTCGGTT
* * *
1127916 GGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGG
326 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGG
* * * * * *
1127981 ATTGACAGCACGTAGAGGGGGACCTGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
391 ATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
1128046 TGAGCACCCGCACGCTCATTTCATGGTTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAACCA
456 TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *
1128111 TACGGAGTTCATTCCAAGTCTAAGAT-----C-G---GA----T----CAG-GCATGCTAGGCTC
521 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * * * * * * *
1128158 AGGCATGTGCTAGTGTCACTTTTTTATTCGCCAGGGCACCATCACCGGAGCATCACCAGAGAACC
586 GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACC
* * *
1128223 TGACCGACGACATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
651 TGACCGACGGCATTGGGGTTCCGACGATCTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
*
1128288 GGGTGCTGGTACTTGGCCCTTATATAT--TCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
716 GGGTGCTGGTACTTGGCCCTTATAT-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
1128351 CCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGG
780 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
1128416 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGCTTTTAGCTGATTTT
845 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
1128473 TTTTGTGCATGCCAACAAAAACAAAAGGATCACGTCTACCATGTTTGGGGCAAAAACTCCTTCCA
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * *
1128538 AAAAAATTTTAAAAAATC-CTGAACTGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
66 AAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
1128602 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAA
130 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* ***
1128667 ATGGCATTGGCATC-CAGAAATATGAAGATGTGGAAAAACCCACCTACCACCCTATCGATCCACG
195 ATGGCATTGGCA-CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
1128731 GGTTGTGCATCCCATCTCTCTAGCCGGCGTAGTGCCCGCCAGCCTGCCCGCCCGCTCGTTTCGTC
259 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC-GCC-GCCCGCCCGCTCGTTTCGTC
* * ** * ** * * *
1128796 GGTTAGCTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGGATCAAACTGAGGGTTGTGGTAC
322 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAG
* * * * * ** * * *
1128861 CAGGATTGGCAGTAGGCAGATGGGGACCCGACCAATCCCCGAATTACGCATCCCACCCCTCTGGA
387 CAGGATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * ** * * *
1128926 TGACTGAGCGCTTGGACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCAA
452 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
1128991 AGCATACGAAGTTCATTCCCAGTCTAAGATCTGACCAGACCGAGGGTTGCGGCAGCACATGCTAG
517 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
1129056 GCTCGGGCATGTGCT-ATACCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
582 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* ** *
1129120 AACCTGACCGGCGGCATTGGGGTTCCGACGATCTGGGGGATCGGGGGGTGTGCGCACAAGATGTG
647 AACCTGACCGACGGCATTGGGGTTCCGACGATCTGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
1129185 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCAC
712 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
1129250 ACCCCCTTAAGGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
777 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
1129315 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
842 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * ** * * *
1129375 TTTTGTGCATCCCAAAAAAAATACAAGGATCATATCTACCATGTTTGGGGCCAAAACCCCTTCCA
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* * * * *
1129440 AAAAAATTTTAAAAAATCCCGAACCGCAAAACGTTTCAAAAATTGTAAAAAATAGAAAACAAGTC
66 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
1129505 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTATATGAATTTACAAGCCATAAAAA
131 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * ** * *
1129570 TATCATTGGCACGTAGAAATATGAAGATGTGGCTAAACCCACCTAGTACCCTATCGATCAATGGC
196 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * * * *
1129635 TTGCGCATCCAATCTCTCTGGTCGGCATAGTGCCTG-C-CCGCCCGCCCGCTCGTTCCGTCGGTT
261 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * *
1129698 GGCTTAGCCATGCGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCAAGGGTTGCAGTAGCAGG
326 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGG
* * * * * *
1129763 A-TCGCTAGCACGCGGAGGGGGACCCAATTGATTCCCGGCTTGCGCATCCCGCCCCTCTGGTCGG
391 ATTGGC-AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* **
1129827 CTAAGCGCCCGCACGCTTGTTTCGTGGGTTGAC-T-----TA--G-G--------CA---T----
455 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
*
1129868 AT--GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
520 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * **
1129931 CGAGCTTGTGCTGGTGCCACATTTTTCTTC-TCCGGGGCACCATCACCGGAGCATCACCACAGAA
585 CGGGCATGTGCTGGTGCCACATTTTTCTTCGT-CGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * *
1129995 CCTGACTGGCGGCATTGTGGTTCCGACGATC-GTGGGGGCCGGGGGGTGT--GCACATGATGTGC
649 CCTGACCGACGGCATTGGGGTTCCGACGATCTG-GGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
1130057 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCGCA
713 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
1130122 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATG
778 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
1130187 GGGAGACTTTTTACAAATGGTCACAAAATCTTGTACACGTCGAGTTTTTAGCTGAATTT
843 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
1130246 TTTTATGCATTCCAACAAAAATACAAGGATCACGTCTAACAAG-TTGGGGACCAAACCCCCTTCC
1 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACTCCTTCC
* * **
1130310 GAAAAAATTTGAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
65 GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
1130375 -GTCCTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
130 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
1130429 GGTTTGCTGC
Statistics
Matches: 6208, Mismatches: 927, Indels: 518
0.81 0.12 0.07
Matches are distributed among these distances:
870 55 0.01
871 295 0.05
872 70 0.01
873 85 0.01
874 2 0.00
878 2 0.00
879 889 0.14
880 248 0.04
881 20 0.00
882 263 0.04
883 365 0.06
884 191 0.03
885 2 0.00
886 234 0.04
887 57 0.01
888 2 0.00
889 2 0.00
890 7 0.00
891 1 0.00
892 7 0.00
893 41 0.01
894 237 0.04
895 3 0.00
896 3 0.00
897 9 0.00
898 180 0.03
899 24 0.00
900 145 0.02
901 638 0.10
902 714 0.12
903 3 0.00
904 4 0.00
905 12 0.00
906 554 0.09
907 1 0.00
908 1 0.00
909 1 0.00
911 1 0.00
912 1 0.00
913 2 0.00
915 1 0.00
917 1 0.00
918 1 0.00
920 2 0.00
922 3 0.00
923 1 0.00
925 3 0.00
926 1 0.00
927 1 0.00
928 1 0.00
930 5 0.00
931 6 0.00
932 7 0.00
933 13 0.00
934 13 0.00
935 9 0.00
936 16 0.00
937 14 0.00
938 19 0.00
939 7 0.00
940 12 0.00
941 7 0.00
942 17 0.00
943 17 0.00
944 16 0.00
945 13 0.00
946 18 0.00
947 12 0.00
948 11 0.00
949 14 0.00
950 12 0.00
951 1 0.00
952 4 0.00
953 4 0.00
954 8 0.00
955 8 0.00
956 2 0.00
957 2 0.00
958 4 0.00
959 4 0.00
960 3 0.00
961 5 0.00
963 1 0.00
966 3 0.00
967 1 0.00
968 3 0.00
969 3 0.00
970 4 0.00
971 2 0.00
972 4 0.00
973 1 0.00
974 494 0.08
975 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCGCCCGCCCGCTCGTTTCGTCGGTT
GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGG
ATTGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
TGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACC
TGACCGACGGCATTGGGGTTCCGACGATCTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
Found at i:1131356 original size:26 final size:26
Alignment explanation
Indices: 1131320--1131372 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1131310 GTTGACTTAG
* *
1131320 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1131346 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1131372 G
1 G
1131373 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1132916 original size:26 final size:26
Alignment explanation
Indices: 1132880--1132931 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1132870 TGACTTAGGC
*
1132880 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAATCTAAGA
1132906 ATACGAAGTTCATTCCCAATCTAAGA
1 ATACGAAGTTCATTCCCAATCTAAGA
1132932 TTGGATCGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAATCTAAGA
Found at i:1134269 original size:703 final size:710
Alignment explanation
Indices: 1132906--1134372 Score: 2144
Period size: 703 Copynumber: 2.1 Consensus size: 710
1132896 CAGTCTAAGA
* * * *
1132906 ATACGAAGTTCATTCCCAATCTAAGATTGGATCGGATTGAGGGTTGCGACAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACTGAGGGTTGCGACAGCACATGCTGGGCT
* **
1132971 CGGGTATGTGCTAGTGCCGCATTTTTCTTCGTCGGGACACCATCGCCGGAGCATTACCAGAGAAC
66 CGGGCATGTGCTAGTGCCGCATTTTTCTTCACCGGGACACCAT--CC-G-G----ACCAGAGAAC
* *
1133036 CTGACTGGCGGCATTAGGGTTCCAGCGATCGGGGGGGCCAGGGAGGGTGTGCGCAAATGATGTGT
123 CTGACTGACGGCATTAGGGTTCCAGCGATCGGGGGGGCCAGGGAGGGTGTGCGCAAATGATGTGC
* * * * *
1133101 GATGGGTGTTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
188 AATGCGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * *
1133166 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTCCCAGTAGCCATTAATGTGTCTGAAGTG
253 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTCCCAGTAGCCATTAAAGTGTCAGAAATG
* * * *
1133231 AGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGATTTTTTTTTG
318 AGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTAGCTGATTTTTTTGTG
** * *
1133296 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAAT
383 CATGCCAACAAAAATACAAGGATCACGTCTACCAAAATTGGGGCCAAAACTCCTTCCAAAAAAAT
* * *
1133361 TTTAAAAAATCCCAAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTAC
448 TTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTGAC
1133426 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
513 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
1133491 GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTAATAGCCTATCGATCCACGGCTTGCGCA
578 GGCATGCAAAAATATAAAGATGTGCCTAAACCCACCTAACACCCTATCGATCCACGGCTTGCGAA
* * * *
1133556 TCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCG-C-C-TGCTCGTTTCGTCGATTGGCTTA
643 TCCCGTCTCTCTGGCCGACGTAGTGCCCCCCCGCCCGCCGCACGCTCGTTTCATCGATTGGCTTA
1133618 GGC
708 GGC
* *
1133621 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACTGAGGGTTGCGACAGCACATGCTGGGCT
* * *
1133686 CGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCAT-C-G-CCAGAGAACCTGA-TCG
66 CGGGCATGTGCTAGTGCCGCATTTTTCTTCACCGGGACACCATCCGGACCAGAGAACCTGACT-G
* * * *
1133747 ACGGCATT-GGGATTCCGGTGATCGGGGGGG-CTGGG-GGGTGTGCGCACATGATGTGCAATGCG
130 ACGGCATTAGGG-TTCCAGCGATCGGGGGGGCCAGGGAGGGTGTGCGCAAATGATGTGCAATGCG
* *
1133809 TGCTGGTACATGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
194 TGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* * * *
1133874 TAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTCCTCCCAGTAGCCATTAAAGTGTCAGAAATGAGGACA
1133939 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTAGCTGAATTTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTAGCTG-ATTTTTTTGTGCATGC
*
1134004 CAACAAAAATACAGGGATCACGTCTACCAAAATTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
388 CAACAAAAATACAAGGATCACGTCTACCAAAATTGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
* * * ** * * * *
1134069 AAAATCTCGAACCGCAAAAAGTTTTGAAATTCATGAAAAATAGAAAATGAGTCGTCTGGCCATGA
453 AAAATCCCAAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTGACCATGA
*
1134134 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGGCAT
518 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
1134199 GCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGAATCCCG
583 GCAAAAATATAAAGATGTGCCTAAACCCACCTAACACCCTATCGATCCACGGCTTGCGAATCCCG
* * *
1134264 TCTCTCTGGCCGGCGTAGTGCCCCCCCTCCCGCTCGCACGCTCGTTTCATCGGTTGGCTTAGGC
648 TCTCTCTGGCCGACGTAGTGCCCCCCCGCCCGC-CGCACGCTCGTTTCATCGATTGGCTTAGGC
*
1134328 ATACGGAGTTCATTCCCACTCTAAGATTGGACCAGACTGAGGGTT
1 ATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACTGAGGGTT
1134373 ACGGTAGCAG
Statistics
Matches: 676, Mismatches: 69, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
702 186 0.28
703 287 0.42
704 37 0.05
705 1 0.00
706 1 0.00
707 66 0.10
709 1 0.00
712 1 0.00
715 96 0.14
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (710 bp):
ATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACTGAGGGTTGCGACAGCACATGCTGGGCT
CGGGCATGTGCTAGTGCCGCATTTTTCTTCACCGGGACACCATCCGGACCAGAGAACCTGACTGA
CGGCATTAGGGTTCCAGCGATCGGGGGGGCCAGGGAGGGTGTGCGCAAATGATGTGCAATGCGTG
CTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTCCTCCCAGTAGCCATTAAAGTGTCAGAAATGAGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTAGCTGATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAAATTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
ATCCCAAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTGACCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
AAAATATAAAGATGTGCCTAAACCCACCTAACACCCTATCGATCCACGGCTTGCGAATCCCGTCT
CTCTGGCCGACGTAGTGCCCCCCCGCCCGCCGCACGCTCGTTTCATCGATTGGCTTAGGC
Found at i:1134514 original size:26 final size:26
Alignment explanation
Indices: 1134485--1134537 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1134475 GTTAACTTAG
* *
1134485 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1134511 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1134537 G
1 G
1134538 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1136761 original size:903 final size:904
Alignment explanation
Indices: 1133619--1138818 Score: 6709
Period size: 903 Copynumber: 5.8 Consensus size: 904
1133609 ATTGGCTTAG
* ** ** *
1133619 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCACATGCTGGG
* * *
1133684 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCG-C----CA------GAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGTCGGAGA
* ** *
1133738 ACCTGATCGA-CGGCATTGGGATTCCGGTGATCGGGGGGG-CTGGGGGGTGTGCGCACATGATGT
131 ACCTGATCGAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
1133801 GCAATGCGTGCTGGTACATGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1133866 CACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCAGAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1133931 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTAGCTGAATTTTTTT
326 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* ** *
1133996 GTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAAATTGGGGCCAAAACTCCTTCCAAAAA
391 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAA
* ** * * *
1134061 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTTGAAATTCATGAAAAATAGAAAATGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
1134126 GGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
1134191 ATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
1134256 GAATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCCCTCCCGCTCGCACGCTCGTTTCATCGGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGG
* **
1134321 CTTAGGCATACGGAGTTCATTCCCACTCTAAGATTGGACCAGACTGAGGGTTACGGTAGCAGGAT
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGAT
** * * ** * *
1134386 CGACGGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCTACCCCTCTGGCCGGCTG
780 CGACAACACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGACTG
* * * * *
1134451 AGCGCCAGTACGCTCGTTTCGTGGGTTAACTTAGGCATACGTAGTTCATTCCCAGTCTAA
845 AGCGCCCGCACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1134511 GCATATGGAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCACATGCTGGG
* * * * * **
1134576 CTC-GAGCATGTGCTGGTGTCGTATTTTTCTTCACCATGGCACCATTGCCGGTGCATCACCGGAG
66 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGTCGGAG
* * *
1134640 AACCTAATCGA-CGGCATTGGGGTTCCAACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATG
130 AACCTGATCGAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * * * *
1134704 TGAGTTGGGGGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCGCATCAAACCTCTAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
** * * *
1134769 ACAATCGCTAAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
1134834 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
* * *
1134899 TGTGCATGCCAACAAAAATACAAAGAT-ACGTCTACGAAGTTTGGGGCCAAAAAT-C-T------
390 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAA
** * * *
1134955 --TTCCAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * *
1135018 TGCCATGAAACTTTATGCGAAGGCTTAAGGGACAATTGCATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
1135083 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
585 ATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * ** *
1135148 GCATCCCGTCTCTCTGGCAGGCATAGT----GCTCGCCTGCCCATCCGCTCGTTTTATCGGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGG
* ** * *
1135209 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTATGATAGCAGGAT
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGAT
* * * * *
1135274 CGACAACACGCAGAGGGGGCCCCGGCCGATCCCTGGCTTGTGCATCCTGCCCCTCTGGTCGACTG
780 CGACAACACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGACTG
* * * *
1135339 AGCGCTCGCA-TGCTCGTTTCGTGAGTTGACTTACGCATACGAAGTTCATTCCCAGTCTAA
845 AGCGCCCGCACT-CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** *
1135399 GGATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGACAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCACATGCTGGG
* *
1135464 CT-AGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAAGGCACCATCGTCGGAGCATCGTCGGAG
66 CTCA-GGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * *
1135528 AACCTGACCG-GCAGCATTGGGGTTCCGGCGATCGGGGGGG-CTGGGGGGTGTGCGCATATGATG
130 AACCTGATCGAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
1135591 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
1135656 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
1135721 ATGGGGACACTTTTTTCAACTGGTCACAAAATCTTGTACACTTCAAGTTTTTAGC-GGATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
* * * *
1135785 ATGTGCATGCCAACAAAAATACAAGGATCATGTCTTA-AAAGTGTGGGGCCATAACTCCTTCTGA
390 -TGTGCATGCCAACAAAAATACAAGGATCACGTC-TACCAAGTTTGGGGCCAAAACTCCTTC-GA
* * * *
1135849 AAAAATTTTAAAAAATCCCCAGCCGCAAAAAGTTTCAAAATTCGTGAAAAATAGAAAACGAGTCA
452 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
1135914 TCTTCCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAAA
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
1135979 GGCATTGGCACATAAAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCAC-GCT
582 GGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
1136043 TGCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTAATCGGT
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGT
* * * * * * *
1136108 TGGCTCAGGCATACGGAGTTCATTCCCAGTCTCATATCAAACCGGACTGAGGATTACGGTAGCAA
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAG
* * * * * * * *
1136173 GATCGGCAACATGCAAAGAGAGACCCGATCGATCCCCAGCTTACGCATCCCGCCCCTCTGGTCGA
777 GATCGACAACACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGA
* * * *
1136238 CTGACCACCCGCACTCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CTGAGCGCCCGCACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1136301 GCATACAAAGTTCATTCCTAGTCTAAGATCAGATTGGACTGAGGGTTACGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCACATGCTGGG
* ** *
1136366 CTCAGCCATGTGCTGGTGCCGCATTTTTCTTCATTAGGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGTCGGAGA
1136431 ACCTGA-CGAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
131 ACCTGATCGAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
1136495 GCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCAAGAACTCA
196 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1136560 CACCCCCTTAAAGAGCATTAGTGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* **
1136625 TGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
326 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* *
1136690 GTGCATGCCTACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCGAAAAA
391 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCG-AAAA
* * *
1136755 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
1136820 TCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
1136885 ATTGGCAGACAGAAAGACGAAGATGTGCCTAAACCCACCTACCACCTTATTGATCCACGGCTTGC
585 ATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * * *
1136950 GCATCCCGTCTCTCTCACCGGCGTAGT--------GACCGCCCGTCCGCTCGTTTCGTCGGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGG
* * ** *
1137007 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGAT
715 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGAT
* ** * ** * *
1137072 CGACAGCACATAGAGGGGGACCC-AGTCGATCCCCGGCTTGCTTATCCCGCCCCTCTGGTCAATT
780 CGACAACACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGACT
* ** *
1137136 GAGCGCCCGCACAT-TCGTTTCGTGTGTTGA-TCTAGGCATACGGAGTTCGGTCCTAGTCTAA
844 GAGCGCCCGCAC-TCTCGTTTCGTGGGTTGACT-TAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1137197 GCATACGAAGTTCATTCTCAGTCTAAGATC-GAACTAGACCGAGGGTTACGACAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACTGGACCGAGGGTTACGACAGCACATGCTGG
** ** * * *
1137261 GCTC-GGTCATGCACTGGTGCTACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGA
65 GCTCAGG-CATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGTCGGA
* * *
1137325 GAACCT-AACTAGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGA
129 GAACCTGATCGAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGA
* *
1137389 TGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
1137454 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
1137519 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATT-T
* *
1137584 TTTT-TGCCTGCCAACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
387 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-G
* * ** * *
1137648 AAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTAAAAAATAAAAAACGAGTC
451 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
1137713 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
1137778 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
581 TGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * **
1137843 TTGCGCATCCTGTCTCACTGACCGACATAGTACCCGCCCGCCCGCCCGCCCGCTCGTTTGGTCGG
646 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGG
* * * * * *
1137908 ATGGCTTAGGCATACGAAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
711 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCA
** * *** * * * * *
1137973 GGATCGGTAGCACGCAGAGAAAGACCCAACCGATCCCTGGCTTGTGCATCTCGCCCCTCTGGCCT
776 GGATCGACAACACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTC-
* * * **
1138038 G-CTGAGCGCCCACACGCTCGTTTCATGGGTTGACTGCGGCATACGGAGTTCATT--C---CT-A
840 GACTGAGCGCCCGCACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1138096 G--T-CTAAG---ATT----G----A-AT----C-GGACCGAAGGTTAC-AGCAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGA-CAGCACATGCTGG
** * * * *
1138140 GCTTGGGAATGTGCTGGTGCCACATTTTGCTTCGCCAGGG---CA----C----CATCGTCGGAG
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGTCGGAG
1138194 AACCTGATCG-GCGGCATTGGGGTTCC-AGCGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGA
130 AACCTGATCGAGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGA
* *
1138257 TGTGCGATGGGTGCTGGTACTTGGCCCTAATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * * * *
1138322 TCACCCCCCCTTAAAGAGCATTTGACATTTTACAGGTTTACTGCCAGTACCCATTAAAGAGTCTG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
1138387 AAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTT
* * * * * *
1138452 TTTGTACAAGCCAAAAAAAAAACAAGGATCACGTCTACCGAG-TTGGGGCCAAAAATCCTTCCGA
388 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGA
* *
1138516 AAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCG
452 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
1138581 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
1138646 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
582 GGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** *
1138711 TGCGCATTCCGTCTCTCTGGTCGGCGTAGT--------GCCCGCCCGCCCGCTCGTTTGGTCGGA
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGT
*
1138768 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAG
712 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAG
1138819 AGTTGCAGCA
Statistics
Matches: 3804, Mismatches: 433, Indels: 175
0.86 0.10 0.04
Matches are distributed among these distances:
859 74 0.02
867 237 0.06
868 280 0.07
869 2 0.00
872 1 0.00
876 2 0.00
878 1 0.00
879 53 0.01
880 3 0.00
884 2 0.00
885 1 0.00
886 8 0.00
887 219 0.06
888 353 0.09
889 5 0.00
890 1 0.00
891 1 0.00
892 292 0.08
893 4 0.00
895 5 0.00
896 329 0.09
897 467 0.12
898 36 0.01
899 169 0.04
900 2 0.00
901 3 0.00
902 332 0.09
903 486 0.13
904 262 0.07
905 172 0.05
906 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (904 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACGACAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGATCGAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATC
GACAACACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGACTGA
GCGCCCGCACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1139401 original size:710 final size:711
Alignment explanation
Indices: 1138183--1139464 Score: 2151
Period size: 710 Copynumber: 1.8 Consensus size: 711
1138173 GCCAGGGCAC
* * * * *
1138183 CATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGAGGGGGTGTG
1 CATCGTCGGAGAACCTGACCGACGACATTAGGGTTCCAGCGATCGGGGGGGCCGGAGGGCGTGTG
*
1138248 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTAATATTGGCCCCCTATCCCTCATCAAAC
66 CGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTAATATTGGCCCCCTATCCCTCATCAAAC
** *
1138313 CTTGAGAACTCACCCCCCCTTAAAGAGCATTTGACATTTTACAGGTTTACTGCCAGTACCCATTA
131 CTTGAGAACTCACCCCCCCTTAAAGAGCATTTGACATTTTACACATTTACTGCCAGTACACATTA
* *
1138378 AAGAGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
196 AAGAGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
** *
1138443 CTGATTTTTTTTGTACAAGCCAAAAAAAAAACAAGGATCACGTCTACCGAGTTGGGGCCAAAAAT
261 CTGATTGCTTTTGTACAAGCCAAAAAAAAAACAAGGATCACGTCTACCAAGTTGGGGCCAAAAAT
* *
1138508 CCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAA
326 CCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTGAAAAATCGTGAAAAATAGAAA
**
1138573 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
391 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTAAATGAATTTACAAGCC
*
1138638 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
456 ATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * **
1138703 CCACGGCTTGCGCATTCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTGGTCGGA
521 CCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCTCGTTTGGTCGGA
1138768 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGAGTTGCAGCAGCAC
586 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGAGTTGCAGCAGCAC
1138833 ATGCTGGGCTCGGGCATGTGCTGGTACCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAG
651 ATGCTGGGCTCGGGCATGTGCTGGTACCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAG
*
1138894 CATCGTCGGAGAACGTGACCGACGACATTAGGGTTCC-GACGATCGGGGGGGCCCGG-GGGCGTG
1 CATCGTCGGAGAACCTGACCGACGACATTAGGGTTCCAG-CGATCGGGGGGG-CCGGAGGGCGTG
*
1138957 TGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCC-CGATCA
64 TGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTAATATTGGCCCCCTATCCCTC-ATCA
* * * *
1139020 AACCTTGAGAACTCA-CCCCCCTTAAAGAGTATTTGAGATTTTACACATTTGCTGCCAGTAGACA
128 AACCTTGAGAACTCACCCCCCCTTAAAGAGCATTTGACATTTTACACATTTACTGCCAGTACACA
* *
1139084 TTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTT
193 TTAAAGAGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
1139149 TAGCTGATTGCTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAA
258 TAGCTGATTGCTTTTGTACAAGCCAAAAAAAAAACAAGGATCACGTCTACCAAGTT-GGGGCCAA
* * * *
1139214 AAATCCTTCCAAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTGGAAAATCGTGAAAAATA
322 AAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTGAAAAATCGTGAAAAATA
1139279 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTAAATGAATTTACA
387 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTAAATGAATTTACA
1139344 AGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTAT
452 AGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTAT
1139409 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGC
517 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGC
1139465 CTGCCCGCTT
Statistics
Matches: 529, Mismatches: 38, Indels: 9
0.92 0.07 0.02
Matches are distributed among these distances:
709 154 0.29
710 276 0.52
711 95 0.18
712 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (711 bp):
CATCGTCGGAGAACCTGACCGACGACATTAGGGTTCCAGCGATCGGGGGGGCCGGAGGGCGTGTG
CGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTAATATTGGCCCCCTATCCCTCATCAAAC
CTTGAGAACTCACCCCCCCTTAAAGAGCATTTGACATTTTACACATTTACTGCCAGTACACATTA
AAGAGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGATTGCTTTTGTACAAGCCAAAAAAAAAACAAGGATCACGTCTACCAAGTTGGGGCCAAAAAT
CCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTGAAAAATCGTGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTAAATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCTCGTTTGGTCGGA
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGAGTTGCAGCAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTACCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAG
Found at i:1139683 original size:26 final size:26
Alignment explanation
Indices: 1139653--1139705 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1139643 GTTGACTTAG
1139653 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
1139679 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1139705 G
1 G
1139706 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1140591 original size:26 final size:26
Alignment explanation
Indices: 1140555--1140607 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1140545 GTTGACTTAG
*
1140555 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
1140581 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
1140607 G
1 G
1140608 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:1140594 original size:902 final size:899
Alignment explanation
Indices: 1138776--1141011 Score: 3304
Period size: 902 Copynumber: 2.5 Consensus size: 899
1138766 GATGGCTTAG
*
1138776 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGAGTTGC-AGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC-GAGGGTTGCGA-CAGCACATGCTGG
* *
1138840 GCTCGGGCATGTGCTGGTACCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
64 GCT-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * *
1138905 AACGTGACCGACGACATTAGGGTTCCGACGATCGGGGGGGCCCGGGGGCGTGTGCGCACATGATG
128 AACCTGACCGAAG-CATTGGGGTTCCGACGATCGGGGGGG-CCGGGGG-GTGTGCGCACATGATG
* ** *
1138970 TGCGATAGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCCGATCAAACCTTGAGAACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCATATCAAACCTCGAGAACTC
* ** * *
1139034 AC-CCCCCTTAAAGAGTATTTGAGATTTTACACATTTGCTGCCAGTAGACATTAAAGTGTCTCAA
255 ACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
*
1139098 ATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTGCTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT--TT
* *
1139162 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAAATCCTTCCAAA
383 TTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
* * * *
1139227 AAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAGTCGT
448 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCAT
* *
1139292 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTAAATGAATTTACAAGCCATAAAAATG
513 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTAAACGAATTTACAAGCCATAAAAATG
*
1139357 GCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
578 GCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTT
* * * * *
1139422 GCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCTGCCCGCTTATTTCTTCGGTT
643 GCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCACCCACCCGCCCGATTATTTCGTCGGTT
* * * *
1139487 GGCTTAGGCATACAAAGTTCATTCCGAGTCTAAGATCGGATCGGACAGAGTGTTGCGATAGCAGG
708 GGCTTAGGCATACAAAGTTCATTCCGAGTCTAAGATCAGACCGGACAGAGGGTTGCGACAGCAGG
* * *
1139552 ATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCCTACACATCCCACCCCGATGGCCGGC
773 ATCGACAGCACGCAAAGAGGGACCCGGTCGATCCCCGGCCTACACATCCCACCCCGATGGCCAGC
*
1139617 TGAACGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
838 TGAACGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* *
1139679 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGAGCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCGACAGCACATGCTGGG
* * *
1139744 CTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATTGCCGGAGAA
65 CTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
*
1139809 CCTGACCGATAGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
130 CCTGACCGA-AGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
1139874 ATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCATATCAAATCTCAAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCATATCAAACCTCGAGAACTCACAC
* * * *
1139939 CCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAATACCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
**
1140004 GGACTTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTTTG
324 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTTG
* *
1140069 CATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGAGG-CAAAAATCCTTTCAAAAAAA
388 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCCAAAAATCCTTCCAAAAAAA
*
1140133 TTTTAAAAAATCTCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCATCTTG
452 TTTTAAAAAATCCCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCATCTTG
** *
1140198 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCTT
517 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTAAACGAATTTACAAGCCATAAAAATGGCAT
* * * *
1140263 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTGTGC
582 TGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGC
** * * *
1140328 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCACCTACCCGCCC-ATTCGTTTCGTCGGTTGGC
647 ATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCACCCACCCGCCCGATT-ATTTCGTCGGTTGGC
** * * *
1140392 TTAGGCATACGGAGTTCATTCCTTA-TCTAAGATCAGACCGGACCGAGGGTTGC-AGCAGCGGGA
711 TTAGGCATACAAAGTTCATTCC-GAGTCTAAGATCAGACCGGACAGAGGGTTGCGA-CAGCAGGA
* * * * * *
1140455 TCGACAGCACGCAAAGAGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTATGGCCAGCT
774 TCGACAGCACGCAAAGAGGGACCCGGTCGATCCCCGGCCTACACATCCCACCCCGATGGCCAGCT
* * *
1140520 -AAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GAA-CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * **
1140581 GCATACGGAGTTCACTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCGACAGCACATGCTGGG
* * *
1140646 CTGGGCATGTGCTAGTGCCGCATTTTTCTTCGTCGGGGTACCATCG-CTGGAGCATCATCGGAGA
65 CTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGA
* * * * * *
1140710 ACCTGATCGGCAGTATTGGTGTTCCGACGATTGGGGGGGCCGAGGGGTGTGCGCACATGATGTGC
129 ACCTGA-CCGAAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
1140775 GATGGGTGCTGGTACATGGCCCTTGTATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCATATCAAACCTCGAGAACTCACA
* *
1140840 CCCCCTTAAAGAGAATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTAAAATG
258 CCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
*
1140905 GGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-T
*
1140970 GCATGCCAAAAAAATTACAAGGATCACGTCTACCAAGTTTGG
387 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
1141012 CCGGAATAGT
Statistics
Matches: 1202, Mismatches: 116, Indels: 31
0.89 0.09 0.02
Matches are distributed among these distances:
900 48 0.04
901 46 0.04
902 1037 0.86
903 68 0.06
904 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACGAGGGTTGCGACAGCACATGCTGGGC
TGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAAC
CTGACCGAAGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCATATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCAT
GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTT
AAAAAATCCCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
GAAACTTCACATGAAGGCTTAAGGGACCATTAAACGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCAACGTAGTGCCCGCCCACCCACCCGCCCGATTATTTCGTCGGTTGGCTTAGG
CATACAAAGTTCATTCCGAGTCTAAGATCAGACCGGACAGAGGGTTGCGACAGCAGGATCGACAG
CACGCAAAGAGGGACCCGGTCGATCCCCGGCCTACACATCCCACCCCGATGGCCAGCTGAACGCC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:1142072 original size:26 final size:26
Alignment explanation
Indices: 1142043--1142093 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
1142033 TGACTTAGGC
1142043 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACGGAGTTCATTCCCAGTCTAAGG
1142069 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
1142094 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGG
Found at i:1142878 original size:26 final size:26
Alignment explanation
Indices: 1142842--1142893 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1142832 GTTGACTTAG
1142842 GCATACGGAGTTCATTC-CTAGTCTAA
1 GCATACGGAGTTCATTCTC-AGTCTAA
1142868 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
1142894 AATTGGACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:1143782 original size:26 final size:26
Alignment explanation
Indices: 1143745--1143797 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1143735 GTTGACATAG
1143745 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1143771 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1143797 G
1 G
1143798 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1144204 original size:903 final size:901
Alignment explanation
Indices: 1142392--1144672 Score: 3326
Period size: 903 Copynumber: 2.5 Consensus size: 901
1142382 TGTCTAAAAC
* * * * *
1142392 GTTTGGGGCCAAAACTTCTTCCGAAAATATTTT-AAAAAT-CTCGAACCGCAGAAAGTTTTGAAA
1 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGAAAAAAGTTTCGAAA
*
1142455 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTCAGGGACCATT
65 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
1142520 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCA
130 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCA
* * *
1142585 CCTACCACCCTATCGATCCACGACTTGCGCATCCAGTCTCTCTGGTCGGCGTAGTGCCCACCCGC
195 CCTACCA-CCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGC
* * * ** *
1142650 CCGCCAGCCCGTTCGTTTCGT-AGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCG
259 CCGCCCGCCCGCTCGTTTCATCA-GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-
* * * ** * *
1142714 GCCCGGATTGCA-GGTTGCAGCAGCAAGATCGACAGCATGCAGAGGGGGACCTGGTCGATCCCCA
322 GACCGGATCG-AGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCTGATCGATCCCCA
* * * * * *
1142778 ACTTGCGCATCTCGCCCCTCTGGTCGGCTGAGGGCCCGCACGCTCGTTTTGTGTGTTGACTTAGG
386 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * *
1142843 CATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAAATTGGACCGGACC
451 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCGGACCGGACC
* * * * * * **
1142908 GAGGGTTGCAGCAGCCCATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTTGGTGGGGC
516 GAGGGATGCAGCAGCACATGCTGGGCTAGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGC
* **
1142973 ACCATCGCCGGAGCATCACCGGAGAACCTGACTGACGGCATTGGGGTTTTAGCGATCGGGGCGGC
581 ACCATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCGAGCGATCGGGGCGGC
* * *
1143038 CGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
646 CGGGGGGCGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTAGCCCCTATATTGGCCCCCTATC
1143103 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCC
711 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCC
1143168 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
776 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* *
1143233 CGAGTTTTTAGATGAATTTTTTCGTGCATGCCAAGAAAAATACAAGGATCACATCTACCAA
841 CGAGTTTTTAGATGAATTTTTTCATGCATGCCAAGAAAAATACAAGGATCACACCTACCAA
* *
1143294 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAA
1 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGAAAAAAGTTTCGAAAA
* * *
1143359 TCATGAAAAATAGAAAACGAGTCGTTTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
66 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* *
1143424 TATGAATTTACAAGCCATAAAAATGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
131 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCAC
* *
1143489 CTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGACGTAGTGCCCGCCCGCC
196 CTACCACC-TATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCC
* *
1143554 CGCCCGCCTGCTCGTTTCATCAGTTGGCTTAGGTATACAGAGTTCATTCCCAGTCTAAGATCAGA
260 CGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-GA
** * * * *
1143619 CCGGATCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAAAGGGGGACCCGATTGATCCCCGGCT
324 CCGGATCGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCTGATCGATCCCCAGCT
* * * * *
1143684 TGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGTAAGCTCATTTCGTGGGTTGACATAGGCAT
389 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
1143749 ACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAG
454 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCGGACCGGACCGAG
* * * *
1143814 GGATGCGGTAGCACATGCTGGGCTAGGGCATGTGTTGGTGCCACATTTTTCTTCGCCGGGGCACC
519 GGATGCAGCAGCACATGCTGGGCTAGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACC
* ** *
1143879 ATCGTCGGAGCATCGTCGGAGAACTTGACCGACGGCATTGGGGTTCCGA-CGATCGGGG-GGCCG
584 ATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTT-CGAGCGATCGGGGCGGCC-
*
1143942 GGGGGGGCGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCCTATATTGGCCCCCTATC
647 -GGGGGGCGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTAGCCCCTATATTGGCCCCCTATC
* *
1144007 CCTCATCAAACCTCTAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
711 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
1144071 AG-AGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGG-CGACAAAATCTTGTACACT
776 AGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC-ACAAAATCTTGTACACT
* * **
1144134 TCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA-AAAAAGTACAAGGATCATGCCTACCAAA
840 TCGAGTTTTTAGATGAATTTTTTCATGCATGCCAAGAAAAA-TACAAGGATCACACCTACC-AA
* * *
1144197 TTTTGGGGCCAAAACTCCTT--AAAAAAATTTAAAAAAATCCTGAACCGAAAAAAGTTTCGAAAA
1 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGAAAAAAGTTTCGAAAA
* *
1144260 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAATCTTCACGTGAAGGCTTAAGGGACCGTTG
66 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
* * *
1144325 TATGAATTTACAAGCCAGAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
131 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCAC
* *
1144390 TTACCACACTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
196 CTACCAC-CTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCC
* * *
1144455 CGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGAA
260 CGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCG-A
* * * * *
1144520 CCAGACCAAGGGTTGCAGTAGCAGGATCGGTAGCACACAGAGGGGGACCTGATCGATCCCCAGCT
324 CCGGATCGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCTGATCGATCCCCAGCT
* * * * * *
1144585 TGCTCATCCCTCCCCTCTGGCCGGTTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCTT
389 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
*
1144650 ACGGAGTTCAATCCCAGTCTAAG
454 ACGGAGTTCATTCCCAGTCTAAG
1144673 ATTGGATCAG
Statistics
Matches: 1231, Mismatches: 135, Indels: 27
0.88 0.10 0.02
Matches are distributed among these distances:
900 1 0.00
901 412 0.33
902 144 0.12
903 586 0.48
904 88 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGAAAAAAGTTTCGAAAA
TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCC
GCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGACC
GGATCGAGGGTTGCAGCAGCAGGATCGGTAGCACGCAGAGGGGGACCTGATCGATCCCCAGCTTG
CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCGGACCGGACCGAGGG
ATGCAGCAGCACATGCTGGGCTAGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCAT
CGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCGAGCGATCGGGGCGGCCGGGG
GGCGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTAGCCCCTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGATGAATTTTTTCATGCATGCCAAGAAAAATACAAGGATCACACCTACCAA
Found at i:1144986 original size:188 final size:187
Alignment explanation
Indices: 1144682--1145023 Score: 483
Period size: 188 Copynumber: 1.8 Consensus size: 187
1144672 GATTGGATCA
* ** ** *
1144682 GACTGAGGGTTTCGGTAGCACATGCTGGGCTTGGGCATGTGCTAGTACCATATTTTGCTTCACCG
1 GACTGAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTAGTACCATATTTTGCTTCACAG
* *
1144747 GGCACCATTGCGAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
66 GGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
*
1144812 GACCTGGGGGGTGTGCGCACATGAAGCACGATTCATTCCTAGTCTAAGATCAGATTG
131 GACCGGGGGGGTGTGCGCACATGAAGCACGATTCATTCCTAGTCTAAGATCAGATTG
* *
1144869 GACTGAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGCAT-TTTT-CTTCAT
1 GACTGAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTAGTAC--CATATTTTGCTTCA-
* * *
1144932 TAGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGA-CGAGCGGCATTGGGGTTCCGACGATTG
63 CAGGGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCG-GCGGCATTGGGGTTCCGACGATCG
* *
1144996 GGGGGGCCGGGGGGGTGTGCGCTCATGA
127 GGGGGACCGGGGGGGTGTGCGCACATGA
1145024 TGTGCGATGG
Statistics
Matches: 135, Mismatches: 16, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
187 48 0.36
188 84 0.62
189 3 0.02
ACGTcount: A:0.19, C:0.23, G:0.35, T:0.23
Consensus pattern (187 bp):
GACTGAGGGTTACGACAGCACATGCTGGGCTCAGGCATGTGCTAGTACCATATTTTGCTTCACAG
GGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG
GACCGGGGGGGTGTGCGCACATGAAGCACGATTCATTCCTAGTCTAAGATCAGATTG
Found at i:1147877 original size:26 final size:26
Alignment explanation
Indices: 1147840--1147892 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1147830 GTTGACTTAG
*
1147840 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1147866 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1147892 G
1 G
1147893 ATCGAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1148905 original size:179 final size:179
Alignment explanation
Indices: 1148615--1148957 Score: 497
Period size: 179 Copynumber: 1.9 Consensus size: 179
1148605 AGATTGGACC
** * * * * * *
1148615 GGATAGAGGGTTGTGGCAGTAGGATCGGTAGCACGTAGATGGGGACCCGATCGATCATCGGTTTG
1 GGATAGAGGGTTACGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCACCAGCTTG
1148680 CTCATCCCGCCCTTCCGGCCGGCTAAGCGCCCACACGCTCGTTTCGTGGGATGACTTAGGCATAC
66 CTCATCCCGCCCTTCCGGCCGGCTAAGCGCCCACACGCTCGTTTCGTGGGATGACTTAGGCATAC
*
1148745 GGAGTTCATTCCCAGTCTAAGCATATGGAGTTCAATCTAAGATCAAACT
131 GGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCAATCTAAGATCAAACT
* * *
1148794 GGATTGAGGGTTACGGCAGCAGGATCGGTAGCACGTAGAGGGGGGCCCGACCGATCCCCAGCTTG
1 GGATAGAGGGTTACGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCACCAGCTTG
* ** * * * * **
1148859 CTCATCCTGCCCTTTTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGTGTAC
66 CTCATCCCGCCCTTCCGGCCGGCTAAGCGCCCACACGCTCGTTTCGTGGGATGACTTAGGCATAC
1148924 GGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCA
131 GGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCA
1148958 TTCCCAGTCT
Statistics
Matches: 143, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
179 143 1.00
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (179 bp):
GGATAGAGGGTTACGGCAGCAGGATCGGTAGCACGTAGAGGGGGACCCGACCGATCACCAGCTTG
CTCATCCCGCCCTTCCGGCCGGCTAAGCGCCCACACGCTCGTTTCGTGGGATGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGCATAAGGAGTTCAATCTAAGATCAAACT
Found at i:1150657 original size:880 final size:871
Alignment explanation
Indices: 1148944--1153656 Score: 5587
Period size: 895 Copynumber: 5.3 Consensus size: 871
1148934 CCCAGTCTAA
* *** * *
1148944 GCATAAGGAGTTCATTCCCAGTCTAAGAACAGACCAG-TTCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACT-GAGGGTTGCGGCAGCACATGCTGG
* *** * *
1149008 GCT-GGGCATGTGCTGGTGCTGCATTTTTCTTCGTTGGGGCAACATCGTCG-GAGCATCGCCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACCGGGCACCATTGTCGAGAGCATCGCCGGA
* *
1149071 GAATCTGACCGGCGGCATTGGGGTTCCGACGATCGGGCGGGCCGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCAGGGGGTGTGCGCACATGATGT
*
1149136 GCGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
1149200 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGACA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1149265 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
1149330 GTGCATGCCAACAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCC-TTCCAAAA
** * *
1149395 AATTTTAAAAAATCCATAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
1149460 TGCTATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
1149525 ATTGGCACGTAGAAACAAGAAGATGTGCCTAACCCCACCTACCACCCTATCGATACACGGCTTGC
582 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
1149590 GCATCCCATCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCCGCCCTCTCGCTCGTTTCGTCAG
647 GCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCG--C-C-CGCTCGTTTCGTCGG
* * * * ** *
1149655 TTGGCTTAGGCCTACGGAGTTCATTCCCAATCTCAGATCAGACCAGACCGAGGGTTGCGATAGCA
704 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTA
* * * * * * *
1149720 GGATCGGTAGCACACAGAGGGGGACCTGATCGATCCCCGGCTTGCTCATCTCGCCCCTCTTGCAG
769 GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTTGCCG
* * * *
1149785 GTTGAGTGCCCGTACGCTCGTTTCATGGGTTGACTTAG
834 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
1149823 GCTTACGGAGTTCAATCCCAGTCTAAGATTGGATCAGACTGAGGGTTTCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1149888 CTCGGGCATGTGCTAGTACCACATTTTGCTTCACCGGGCACCATTG-CGAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGCACCATTGTCGAGAGCATCGCCGGAGA
* * * **
1149952 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGACCTGGGGGTGTGCGCACATGAAGCAC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG-CCAGGGGGTGTGCGCACATGATGTGC
* *
1150017 GATTGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
1150082 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
1150147 GGGAAACTTTTTTCAAATGGTCCCAAACTCTTGTACACTTCGAGTTTTTAGCGGAATATTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
**
1150212 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACAGCTTCCAAAACAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAA-AA
* * * * *
1150277 TTTTAAAAAATCCCGCACCTTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGCCTTG
454 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
1150342 CCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
1150407 TGGCATGCAGAAATATAAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGGCTTGCGC
584 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
1150472 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCAGCCCGCCCGCCCGCCCGCTCCTTTCATCGGTT
649 ATCCCGTCTCTCTGGCCGACGTAGT--------GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* ** *
1150537 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGTAGG
706 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGG
* * * * *
1150602 ATCGGCAGCACGCAGAGAGGGACCCGGTCAATCCCCGACTTGCACATCCCGCCCCTCTGGCCGGC
771 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTTGCCGGC
* *
1150667 TGAACGCCCGCACGCTCGTTCCGTGGGTTGACTTAG
836 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*** * * * *
1150703 GCATACGGAGTTCATTCCCAGTCTAAGACCAGACCGGACCGAGGGTTGCGGCAGCACACGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCGGCAGCACATGCTGGG
* * *
1150768 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCACCCCTGGTGC-CACATTTTTCTTCACCGGGGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA--CC-GG-GCAC-CA---TT-GT---C---G-
* * *
1150832 ACAATCATCGGAGCATCGCAGGAGAACCTGACCGGCGGCATTGGGGTTCTGATGATCGGCGGGGC
115 ------A---GAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGC
*
1150897 CGGGGGGTTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
170 CAGGGGG-TGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
**
1150962 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGTAGGTTTGCTGC
234 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
1151027 CAGTAGCCATTAAACTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
299 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
1151092 TCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAACAAAAATATAAGGATCACGTCTACCAAGTT
364 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
** *
1151157 TGGCCCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCA
429 TGGGGCTAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
* *
1151222 TGAAAAATAGAAAACGAGTCG-CGTTGCCATGTAACTTCACGTGAAGGCTTAAGGGACCGTTGTA
493 TGAAAAATAGAAAACGAGTCGTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
1151286 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
557 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
1151351 ACCACCATATCAATTCACGGCATGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCG
622 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* * * * * * * * * *
1151412 TCTGCTCATTTTGTCAGTTGGCCTAGGGATACGTAGTTCATTCCTAGTCTAAGATCAGATCAGAC
687 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * *
1151477 CGAGGGTTGCGGCAGTAGGATCGGTAACACGCAGAGAGGGACCC-AGTCGATCCCCGACTTGCGC
752 CGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGACTTGCGC
* * ** * * *
1151541 ATCCCGTCCCTCTGGTTGACTGATCGCCCGCATGCTCGTTTCGTGGGTTGACTTAG
816 ATCCCGCCCCTCTTGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
1151597 GCATACAGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTTCTAGTCTAAGATTGGATTGAAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---A--T-T-G-----GA-T-CA--G-AC
* * * * *
1151662 TGAGAGTTTCGGCAGCACATGCTGGGCTCGCGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGG
40 TGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC-GGG
* * ** *
1151727 CACCATCG-CCAGAGCATCGTAGGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGG
104 CACCATTGTCGAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGG
*
1151791 GCCAGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTA
168 GCCAGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
1151856 TCCCTCATCAAACCTCGAGAACTCACTCCCCCTTAAAGAGCATTAGAGACTTTACAGGTTTGCTG
233 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
1151921 CCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
1151986 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGT
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
1152051 TTGGGGCCATAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATC
428 TTGGGGCTAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
*
1152116 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTG
492 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
1152181 CGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCT
557 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
1152246 ACCACCCTATCGATCCAAGACTTACGCATCCTGTCTCTCTGGCCGGCGTAGT----GCCCGCCCG
622 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* *
1152307 CCCGCTCGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC-GAACCCGA
687 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCAGA
** * * * *
1152371 ATGAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGC
751 CCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGC
* * *** *
1152436 ATCCTGCCCCTGTAATCGGCTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAG
816 ATCCCGCCCCTCTTGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
1152492 GCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATTGGAC
1 GCATACGGAGTTCATTCCC-A-GT---C-TA---AG---A-T--T-G-----GATC--A---GAC
* * * *
1152557 TGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG
40 TGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-ACCGGG
* * * *
1152622 CACCATTGTCG-GAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATCGGGGGG
104 CACCATTGTCGAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGG
* * *
1152686 GCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGGCCCCTA
168 GCCAGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
1152751 TCCCTCATCAACCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG
233 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
1152816 CCAGTAGCCAGTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
1152881 TTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGT
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * **
1152946 TTAGGGTTAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCGAATCGTAAAAA-TTTTGAAAATC
428 TTGGGGCTAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* **
1153010 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGCTGTA
492 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
1153075 TGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATATGAAGATGTGCCTAAACCCACCT
557 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
1153140 ACCACCCTATCGATGCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAAT----GCCCGCCCG
622 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* *
1153200 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACC-GAA
687 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAG-A
* ** * * * *
1153264 TCGAGGGTTGTTGCAGTAGGATC-GCAGCATGCAGAGGGGGACCCGACCGACCCCCGACTCGCGC
751 CCGAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGC
* * * * * * *
1153328 ATCCCGCCCCTTTTACCGGCTGAGCGCTCACACGCCCGTTTCATGGGATGACTTAG
816 ATCCCGCCCCTCTTGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
1153384 GCATACGGAGTTCATTCCCAGTCTAACCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---ATT----G-----GATC--A---GAC
* * * * * *
1153449 CGAGGGTTACGACAGCACGTGCTGGGCT-GGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGG
40 TGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA-CCGGG
** * * * * * *
1153513 CACCATCATCG-GAACCTCACCGAAGAACCTGACCGGCGGCATTGGGGTTCCGGCAATCAGGGGG
104 CACCATTGTCGAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGG
* * *
1153577 GCCAAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTCGCCCCC
168 GCC-A-GGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
**
1153642 TATCCGACATCAAAC
231 TATCCCTCATCAAAC
1153657 TAAAGAGCTT
Statistics
Matches: 3371, Mismatches: 373, Indels: 166
0.86 0.10 0.04
Matches are distributed among these distances:
878 5 0.00
879 159 0.05
880 675 0.20
881 1 0.00
882 3 0.00
883 3 0.00
884 20 0.01
887 2 0.00
889 1 0.00
891 90 0.03
892 164 0.05
893 157 0.05
894 361 0.11
895 1072 0.32
896 62 0.02
897 2 0.00
899 2 0.00
900 2 0.00
902 1 0.00
903 2 0.00
905 53 0.02
906 464 0.14
907 4 0.00
909 1 0.00
914 1 0.00
915 2 0.00
917 4 0.00
918 5 0.00
919 1 0.00
920 52 0.02
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (871 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGCACCATTGTCGAGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
ATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGCAGCA
CGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTTGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAG
Found at i:1150812 original size:24 final size:24
Alignment explanation
Indices: 1150780--1150826 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
1150770 CAGGCATGTG
1150780 CTGGTGCCACATTTTTCTTCACCC
1 CTGGTGCCACATTTTTCTTCACCC
1150804 CTGGTGCCACATTTTTCTTCACC
1 CTGGTGCCACATTTTTCTTCACC
1150827 GGGGCACAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.13, C:0.36, G:0.13, T:0.38
Consensus pattern (24 bp):
CTGGTGCCACATTTTTCTTCACCC
Found at i:1151626 original size:26 final size:26
Alignment explanation
Indices: 1151597--1151649 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1151587 GTTGACTTAG
1151597 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTGCCAGTCTAA
* * *
1151623 GCATACGGAGTTCATTTCTAGTCTAA
1 GCATACAGAGTTCATTGCCAGTCTAA
1151649 G
1 G
1151650 ATTGGATTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTGCCAGTCTAA
Found at i:1152521 original size:26 final size:26
Alignment explanation
Indices: 1152492--1152544 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1152482 GTTGACTTAG
1152492 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
1152518 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1152544 G
1 G
1152545 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1153415 original size:26 final size:26
Alignment explanation
Indices: 1153385--1153435 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
1153375 ATGACTTAGG
1153385 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
1153411 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
1153436 GATCAGATCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:1155741 original size:26 final size:26
Alignment explanation
Indices: 1155705--1155757 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1155695 GTTGACTTAG
1155705 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1155731 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1155757 G
1 G
1155758 ATCGAACCCG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1158914 original size:718 final size:719
Alignment explanation
Indices: 1157517--1158972 Score: 2319
Period size: 718 Copynumber: 2.0 Consensus size: 719
1157507 TAAGTATATG
* * * ** * * * * *
1157517 GAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGTGGTAGCACATGCTTGGCTTGGGA
1 GAGTTCATTCCTAGTCTAAGATAGGACCAGACCAAGGGTTGCGGCAACACATGCTGGGCTCGGGA
* *
1157582 ATGTGCTGGTACCGCATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCGCCAGAGAACCTGAC
66 ATGTGCTGGTACCGCATTTTTCTTCACCGAGGCACCATCGCTGGAGCATCACCAGAGAACCTGAC
* *
1157647 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTTGTGCGCACATGATGTGCGATGG
131 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGGATGTGCGCACATGATGTGCGATGG
* * * *
1157712 GTGCTGGTACTTGGCACTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCTCC
196 GTGCTGCTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
1157777 TTAAAGAGCATTTGAGATTTTAGAGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
261 TTAAAGAGCATTTGAGATTTTACAGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
1157842 CTCTTTTCAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
326 CTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
* *
1157907 CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
391 CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTTTAA
*
1157972 AAAATCCCCAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
456 AAAATCCCCAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGA
1158037 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
521 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
1158102 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCG
586 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTGCGCATCCCA
*
1158167 TCTCTCTGGCCGGCGCAGTGCCTGCCCGCCCGCCCGCACGCTCATTTCGT-GCGTTGACTTAGGC
651 TCTCTCTAGCCGGCGCAGTGCCTGCCCGCCCGCCCGCACGCTCATTTCGTCG-GTTGACTTAGGC
1158231 ATACA
715 ATACA
* *
1158236 GAGTTTATTCCTAGTCTAAGATAGGACCAGACCAAGGGTTGCGGCAACACATGCTGGGCTCGGGC
1 GAGTTCATTCCTAGTCTAAGATAGGACCAGACCAAGGGTTGCGGCAACACATGCTGGGCTCGGGA
* * ** * *
1158301 ATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCG-TCGGAGCATCACCGGGGAACCTGA
66 ATGTGCTGGTACCGCATTTTTCTTCACCGAGGCACCATCGCT-GGAGCATCACCAGAGAACCTGA
* * *
1158365 CCGGCGGCATTGGGGTTTCGGCGATCGGGGGGGTC-GAGGGGATGTGCGCACATGATGTGCGATG
130 CCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGGATGTGCGCACATGATGTGCGATG
*
1158429 GGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
195 GGTGCTGCTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
1158494 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
260 CTTAAAGAGCATTTGAGATTTTACA-GTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
1158559 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTTGCAT
324 CACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCAT
* *
1158623 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACGCCTTCCAAAAAAATTTT
389 GCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTTT
*
1158688 AAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCAT
454 AAAAAATCCCCAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCAT
*
1158753 GAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
519 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
1158818 ACACAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGACTTGCGGATCC
584 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTGCGCATCC
* * * * * * *
1158883 CATCTCTCTAGCTGGCGTAGTG-CTCGCCCGCCTGCCCGCTCGCTCGTTTTGTCGGTTGGCTTAG
649 CATCTCTCTAGCCGGCGCAGTGCCT-GCCCGCCCGCCCGCACGCTCATTTCGTCGGTTGACTTAG
*
1158947 GCATACG
713 GCATACA
*
1158954 GAGTTCATTCCTATTCTAA
1 GAGTTCATTCCTAGTCTAA
1158973 AATTGGACTG
Statistics
Matches: 674, Mismatches: 59, Indels: 9
0.91 0.08 0.01
Matches are distributed among these distances:
717 2 0.00
718 442 0.66
719 230 0.34
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (719 bp):
GAGTTCATTCCTAGTCTAAGATAGGACCAGACCAAGGGTTGCGGCAACACATGCTGGGCTCGGGA
ATGTGCTGGTACCGCATTTTTCTTCACCGAGGCACCATCGCTGGAGCATCACCAGAGAACCTGAC
CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGAGGGGATGTGCGCACATGATGTGCGATGG
GTGCTGCTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGC
CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTTTAA
AAAATCCCCAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGACTTGCGCATCCCA
TCTCTCTAGCCGGCGCAGTGCCTGCCCGCCCGCCCGCACGCTCATTTCGTCGGTTGACTTAGGCA
TACA
Found at i:1159144 original size:26 final size:26
Alignment explanation
Indices: 1159108--1159158 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1159098 TGACTTAGGG
1159108 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
1159134 ATACGGAGTTCATTCCCAGTGTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
1159159 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:1160038 original size:26 final size:26
Alignment explanation
Indices: 1159986--1160038 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1159976 GTTGACTTAG
* *
1159986 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
1160012 GCATACAGAGTTCATTCCCAATTTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1160038 G
1 G
1160039 GTCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1161251 original size:897 final size:894
Alignment explanation
Indices: 1158260--1166964 Score: 10312
Period size: 897 Copynumber: 9.8 Consensus size: 894
1158250 TCTAAGATAG
* * *
1158260 GACCAGACCAAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTT
1 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* ** * * * * *
1158325 CGTCGAGGCACCATCGTCGGAGCATCACCGGGGAACCTGACCGGCGGCATTGGGGTTTCGGCGAT
66 CGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGG-TTCGACGAT
* * * *
1158390 CGGGGGGGTCGAGGGGATGTGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTG
130 C-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
1158455 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
194 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
1158520 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
259 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
1158585 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTC
324 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * *
1158649 TACCAAGTTTGGGGCTAAAACGCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
389 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
** * *
1158714 TGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGA
454 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
1158779 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
519 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
* * * * * *
1158844 ACCCACGTACCACCCTATCGATCCACGACTTGCGGATCCCATCTCTCTAGCTGGCGTAGTGCTCG
584 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G-T-G
* * * * *
1158909 CCCGCCTGCCCGCTCGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTATTCTAAA
645 CCCGCCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * **
1158974 ATTGGACTGGACCGAGGGTTGTGGTAGCAGGATCAGCAGCACACAGAGGGGGACCCGACCGATCC
709 ATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGATCC
* * * * ** *
1159039 CCGGCTTACGCATGCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTTATAGGTTGACTT
774 CCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
* *
1159104 AGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCA
839 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA-T-T-AGGTCA
* * *
1159163 GACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGTCGCATTTTTCTT
1 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * *
1159228 CGTCGGGGCACCAT---C---G--T---CGGAGAACCTGACTGGCGATATTAGGGTTTCGATGAT
66 CGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGACATT-GGGGTTCGACGAT
*
1159282 CGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTA-------C-----TTG
130 C-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
1159334 GCCCCCTATCCCACATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAA
194 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
1159399 GTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGCACACTTTTTTCAAATGGTCACAAAATC
259 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
1159464 TTGTACACGTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTC
324 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
1159529 TACCAAGTTTGGGGCCAAAAATCCTACCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT
389 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* ** * * *
1159594 CAAAATTTGTGAAAAATAGAAAACGAGTCGACTTGCCATAAAACTTCACGTGATGGCTTAAGGGA
454 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* **
1159659 CCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
519 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
** * * *
1159724 ACCCACCTATAACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCAGCGTAGTGCCCG
584 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * *
1159789 CCCGCCCACCCGCCCGCTCGTTTCGTTGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAG
649 CCCG----CCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * * *
1159854 ATTGGACCGGATCGAGGGTTGTGGTAGCAAGATCGGTAACACGTAGAGGGGGACTCGACCGATCC
709 ATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGATCC
* * * ** * *
1159919 CTGGCTTGCACATCCTGCCCCTTTGGCCAACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
774 CCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
*
1159984 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAATTTAAGGTCA
839 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC-A-TT-AGGTCA
* * * *
1160043 GACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTT
1 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * *
1160108 CGTCGGGGAACCATCACCGGAGCATCGCCGGAGAACCTGATCGATGGCATTTGGGTTTCGACGAT
66 CGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGACA-TTGGGGTTCGACGAT
* * * * * *
1160173 CAGGGGGCC-GGGCGGTGTGCACACAAGATGTACGATGGGTGTTGGTACTTGGCCCTTATATTGG
130 CGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
1160237 CCCCCTATCCCTCATCAAACCTTGAGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
195 CCCCCTATCCCTCATCAAACC-TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * **
1160302 GCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATGGTCTTAAAATC
259 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
1160367 TTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGCATCACGTC
324 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
1160432 TACCATGTTTGGGGACAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
389 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * *
1160497 CAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGA
454 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
1160562 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAGGAAGATGTGCCAAA
519 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
* * * * *
1160627 ACCAACCTATCACCCTATCGATCCACGGCTTGCTCATCCTGTCTCTCTGGCCGACGTAGTGCCCG
584 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* *
1160692 CCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGG
649 CCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * * * * * *
1160757 ACCAGACCAAGGCTTACGGCAGCAGGATCGGTAGCATGCAGAGGGGGACCTGACCGATCCCCGGT
714 ACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCCGGC
* ** * *
1160822 TTGCGCATCCTG-CCCTTTGATCGGTTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCA
779 TTGCGCATCCCGCCCCTTTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* **
1160886 TACGGAGTTCTTTCCCAGTCTAAGCATACGGAGTTCATTCCCAATTTATGGTTG
844 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC-A-TTA-GGTCA
*
1160940 GACCAGACCGAGGGTTGTC-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCT
1 GACCAGACCGAGGGTTG-CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
1161004 TCGTCGGGGAACCATCACCGGAGCATCGCCGAAGAACTTGACCGACGACATTTGAGTTACGACGA
65 TCGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTT-CGACGA
** * *
1161069 TCAAGGGGCCGGGGGGGTGTGCGCACAAGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTG
129 TCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
1161134 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAG
194 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
1161199 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATC
259 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
1161264 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGA-AAAAATAAAAGGATCACGT
324 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGT
* * * * *
1161328 CTACCATGTTTGGGGACAAAACTCCTTTCGAAAAAATTTAAAAAAATCCCAAACCGTAAAAAGTT
388 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
*
1161393 TCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
453 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * ** *
1161458 ACCATTGTCTGAATTTACAAGCTATAAAAATGGCATTGGCACGTAGAAATATGAAAATGTGCCTA
518 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
* * ** *
1161523 AACCCACTTACCACCCTATCGATCCACGGCTTGCGCTTCCCGTCTCTCTGGCCAACGTAGTGCCT
583 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * * * *
1161588 GCCCACCCGCTTGCTTGTTTCGTCGGTTCGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATC
648 GCCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
1161653 AGACCGGATCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGAACGATCCCCG
712 GGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCCG
* ** * *
1161718 ACTTATGCATCCCACCCCTTTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
777 GCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
1161783 CATACGAAGTTCATTCCCAGTCTAAG-AT-C-G-G--------C------TC-
842 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCATTAGGTCA
* * * * * * * *
1161817 G----GACTGAGGGTTACGGTAGCACATGCCGGGATTGGGCATGTGTTGGTGCCACATTTTTCTT
1 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * * * *
1161878 CGTCGGCGCACCATCACCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGTGAT
66 CGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCGA-CGAT
*
1161943 CGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATAG
130 C-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * * *
1162008 GCCCCCTATCCCTAACCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAG
194 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
1162073 GTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
259 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
*
1162138 TTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
324 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * ** *
1162203 TA-AAAGGTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTTGAATCGTAAAAAGTTT
389 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * * *
1162267 CAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATTAAACTTCACGTGAAGGCTTATGGGA
454 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* ** *
1162332 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTATGCAGAAATATGAAGATGTGACTAA
519 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
* *
1162397 ACCCACCTACCACCCTATCGATCCACAGCTTGCGCTTCCCGTCTCTCTGGCCGGCGTAGTGCCCG
584 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
* * *
1162462 CCCACCCGCCCTCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG
649 ----CCCGCCCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * ** *
1162527 ATCAAATCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGATTCGGCCGATCC
709 ATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGATCC
* * * * ** * * *
1162592 TCGACTTGTGCATCCCGACCCTTTGGCCGGCTGAGTGCCCGCATGCTCGTTTCGTTGGTCGACTT
774 CCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
* *
1162657 ACGCATACGGAGTTCATTCCTAGTCTAAG-AT-C-G-G---A---CC-----G--A
839 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCATTAGGTCA
* *
1162696 -ACC--A---AGGGTTGCGGCAGCACATGCCGGGCTCGGGCATCTGCTGGTGCCGCATTTTTCTT
1 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * ** * **
1162755 CGTCGGGGCACCATCGCCAGAGCATCGTTGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGAT
66 CGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTT-CGACGAT
*
1162820 CGGGGGGCCGGGGGGGTTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTG
130 CGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * * *
1162885 GCCCCCTATCCCTCATAAAACCTCGAGAACTCACACCTCCTTCAAGAGCATTTGAGATTTTACAG
194 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
1162950 GTTTGCTGCCAGTAGCCATGAATGTGTCTAAAATGAGGACACTTTTTTCAAATGGTCACAAAATC
259 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * *
1163015 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGGGAATGCCATCAAAAATACAAGGATCACGTA
324 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * ** *
1163080 TACCAAGTTTGGGGCCGAAACTCCTTCCAAAAAAATTTTAAAAGATCCCGAACCACAAAACGTTT
389 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
** * * *
1163145 TGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
454 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * *
1163210 CCATTGTATGAATTTACAAGCCAGT-AAAATGGTATTGGCACGCAAAAATATAAAGATGTGCCTA
519 CCATTGTATGAATTTACAAGCCA-TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
* * * *
1163274 AACCCACCTACCACCCTATCGATCCATGGCTTGCGCTTCCCGTCTCT-TCGGTCGGTGTAGTGCC
583 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCCGGCGTAGTGCC
* * *
1163338 CGCCTGTCCGCCCGCACGCTCGTTTCATCGGTTGCCTTAGGCATACGGAGTTCATTCCCTGTCTA
647 CG-C---CCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * ** * * ** *
1163403 AGATCGGACCGGACCGATGGTTGTGACAGCAGGATCAGTAGCATATAGACGGGGACCCGACCGAT
707 AGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGAT
* * * *
1163468 TCCCGGCTTGCGCATCCCGCCCTTTTGGCCGGCTGAGCACCAGCACGCTCGTTTCGTGGGTCGAC
772 CCCCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
* * *
1163533 TTAGGCATACAGAGTTCATTCCCAATCTAAGCATGCGGAGTTCATTCCCAGTCTAGGATCA
837 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA-T-TAGG-TCA
* * * * *
1163594 GACCGGACCAAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTT
1 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * *
1163659 CGCCGGGGCACCAT---C---G--T---CAGAGAACCTGATCGACGACATTGGGGTTCCAGCGAT
66 CGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCGA-CGAT
* * * * * *
1163713 CGGGCGGGCCGGTGGGGTGTGTGCACATGATGTGTGATGAGTGCTAGTGCTTGGCCCTTATATTG
130 CGGG-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
** * *
1163778 GCCCCCTATCCCTCATCAAACCTTGAGAACTCCCACCCCCTTAAAGAGCATTTTAGATTTTACAG
194 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
1163843 GTTTGCTGCCAGTAGCTATTAAAGTGTCTGAATTGGGGACACTTTTTTTAAATGGTCACAAAATC
259 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * *
1163908 TTGTACACTTCAAGTTTTTAGTTGAATTTTTTTGTGCTTGCCAA-AAAAATA-AAGGATCAAGTC
324 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
1163971 TATCAAGTTTGAGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTT
389 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
** * *
1164036 TGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAATTTCACGTGAAGGCTTAAAGGA
454 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
1164101 CCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGCTGTGCCTAA
519 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAA
* ** *
1164166 ACCCACCTACCACCCTATCAATCCACAGG-TTGTACATCCCGTCTCTCTGGCCGACGTAGTGCCC
584 ACCCACCTACCACCCTATCGATCCAC-GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * *
1164230 GTCCTCCAGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCCATTCTAA
648 G--C-CC-GCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
1164295 GATCGGACCAGATCAAGGGTTGC-GCAGCAGGATCGACAGCACGTA-AAGGGGACCCGACCGATC
708 GATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGATC
* * * *
1164358 CCCGGCTTGCGCATCCCG-CCCTTCTGGCTGGTTGAGCGCCCGCACGCTCGTTTTGTGGGTTGAC
773 CCCGGCTTGCGCATCCCGCCCCTT-TGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC
* * * * *
1164422 TTAGGCATACGGAGTTCATTCCCAATCTAAGCATACCGAGTTCTTTCCCAATCTAAGATCG
837 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC-AT-T-AGGTCA
* * **
1164483 GACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGTTGCCAAATTTTTCTT
1 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* *
1164548 CGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGATGAT
66 CGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTC-GACGAT
** * ** *
1164613 CGGGTGGGCCATGGGGGTATGCGCACATGATGTAAGATGGGTGCTGGTACTTGGCCCATATATTG
130 CGGG-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* **
1164678 GCCCCCTATCCCTCATCAAACTTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
194 GCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
1164743 GTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCAC-AAATC
259 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
1164807 TTGTACACTTAGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
324 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * ** *
1164872 TACCAAGATTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
389 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * * * *
1164937 CAAAAATCGTTAAAAATAGAGAACGAGTCATCTTGCCATGAAATTTCACGTGAAGGCTTAAGGGA
454 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
** *
1165002 CCATTGTATGAATTTA-AAGGCCATAAAAATCTCATTGGCACACAGAAATATGAAAATGTGCCTA
519 CCATTGTATGAATTTACAA-GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
* * * * ** *
1165066 AACCCAACTACCACCCTATCGACCCACAGCTTGCACATCAAGTCTCTCTGGTCGGCGTAGTGCCT
583 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G--T
*
1165131 GCCCGCCCGACCGCCCGTCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
644 GCCCG--C--CCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* ** * ** * * * * **
1165196 CGAAGATTAGACCGGACTGAGCATTGCAGTAGTAGGATCAGCAGCATGTAGAGGGGGACCCGGTC
704 CTAAGATCGGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACC
* * * * *
1165261 GATCCCCGGCTTGCGCATCCCGCCCCTCTAGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTT
769 GATCCCCGGCTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
* *
1165326 GACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCA
834 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA-T-T-AGGTCA
* * * *
1165389 GACCGGACCGAGGGTTGCGGTAGCACATGTTGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTT
1 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
** ** ** * * * **
1165454 CACCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGATCGGC-AGCATTAGGGTTCCGGTGA
66 CGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGA-CATTGGGGTT-CGACGA
* * *
1165518 TCAGGGGGGCCGGGGGGGTGTGCGCATATGATGTGTGAT-GGTGGTGGTACTTGGCCCTTATATT
129 TC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
** * *
1165582 TTCCCCCTATTCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTACA
193 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * * * *
1165647 GGTTTGCCGCCAGTAGCCATTACAGCGTCTGAATTGGGGTCACTTTTTTCAAATGGTCATAAAAT
258 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
1165712 CTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
323 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * **
1165777 CTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCGCGAAAAGTT
388 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* * *
1165842 TCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAGTTCATGTGAAGGCTTAAGGG
453 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
1165907 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGA-AGAAATATGAAGATGTACCT
518 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CACAGAAATATGAAGATGTGCCT
* * *
1165971 AAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGTCGTAGTGCC
582 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * * * * * *
1166036 CG-TCG---GCCAACTCATTTCATCGGTTGGCTTGGGCATACAGAGTTCATTCCTAGTCTAAGAT
647 CGCCCGCCCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * **
1166097 CAGACCGGA--TAAGGTTGCGGTAG-AGGATCGG-TGCATGCAGA--GGGA-CCGGTCGATAACC
711 CGGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGAT--CC
* * * * * * *
1166155 TC-GC-TGCGCAAT-CCGCCCCTCTGGTCGGCTGAGC-GCCTCACGCTCGTTTTGTGGGTTGGCT
774 CCGGCTTGCGC-ATCCCGCCCCTTTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACT
* *
1166216 GTAGG-ATACGGAGTTCATTCCC-GCTCGTAA--A-A--GA--TGA----CA-GACGG--A
838 -TAGGCATACGGAGTTCATTCCCAG-TC-TAAGCATACGGAGTTCATTCCCATTA-GGTCA
* * * *
1166261 -A--TGA-AG-GGGTT-CTGTAGCACATGCTGGGCTCGGGCAATGTGCTGGGTTGCCGCAATTTT
1 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC-ATGTGCT-GG-TGCCGC-ATTTT
* * *
1166320 TCTT--TCGCGTGCACCAT---C---G--T---CGG-GAA-C-GAATCGACAACATTGGGG-TCT
62 TCTTCGTCG-GGGCACCATCACCGGAGCATCGCCGGAGAACCTG-ACCGACGACATTGGGGTTC-
* ** * * *
1166368 GGCGATCGATGGGTC-GGGGGGTGTGCGCACATGAATGTTGTGAAT-GGT-CTGGTAGTTGGCCC
124 GACGATCGGGGGGCCGGGGGGGTGTGCGCACATG-ATG-TGCG-ATGGGTGCTGGTACTTGGCCC
* * *
1166430 TTAATGTTGGCCCCC-AT--C-CATC-AACCTTCGAGGAACTCACA-CCCCTTAATAGAACATTT
186 TT-ATATTGGCCCCCTATCCCTCATCAAACC-TC-AAGAACTCACACCCCCTTAA-AGAGCA-TT
* *
1166489 TGATATTTTACAGGTTTTGCTGCCCAGTAGCCATTAAAGT-TCT-AAATGGGGACACTTTTTGCA
246 TGAGATTTTACAGG-TTTGCTG-CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-
* *
1166552 AAACTGGTCACTAAAATCTTGTACACTTCGCAGTTTTTTAGCTGAATTTTTTTTTGCATGCCAAA
308 AAA-TGGTCAC-AAAATCTTGTACACTTCG-AG-TTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
1166617 AAAAATACAAGGACCACGTCTACCAAGTTTAGGGG-TAAATA-TCCTTCGGAAAAAATTTTAAAA
369 AAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAA-ACTCCTTCCGAAAAAATTTTAAAA
* * **
1166680 AATCCTGAACCGTAAAAATTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
432 AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* ** **
1166745 CTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCATGC
497 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* *
1166810 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCAAGGCTTGCGCATCCCGTC
562 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
1166875 TCTCTGGCCGGCGAAGTGCCCGCCCGCCAGCTCGCCCCCTCGGTTCGTCGATTGGCTTAGGCATA
627 TCTCTGGCCGGCGTAGTGCCCGCCCG-C--C-CG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATA
*
1166940 CGGAGTTCATTCCCGGTCTAAGATC
687 CGGAGTTCATTCCCAGTCTAAGATC
1166965 AAACAAAACG
Statistics
Matches: 6798, Mismatches: 827, Indels: 390
0.85 0.10 0.05
Matches are distributed among these distances:
851 4 0.00
852 14 0.00
853 32 0.00
854 40 0.01
855 40 0.01
856 48 0.01
857 21 0.00
858 5 0.00
859 277 0.04
860 7 0.00
861 1 0.00
863 1 0.00
866 23 0.00
867 56 0.01
868 7 0.00
869 16 0.00
870 9 0.00
871 1 0.00
872 4 0.00
873 333 0.05
874 247 0.04
875 1 0.00
876 23 0.00
877 528 0.08
878 409 0.06
879 165 0.02
880 538 0.08
881 6 0.00
882 1 0.00
883 2 0.00
884 1 0.00
885 2 0.00
886 29 0.00
887 52 0.01
888 18 0.00
889 190 0.03
890 70 0.01
891 372 0.05
892 61 0.01
893 234 0.03
894 64 0.01
895 4 0.00
896 8 0.00
897 627 0.09
898 296 0.04
899 120 0.02
900 210 0.03
901 232 0.03
902 30 0.00
903 470 0.07
904 64 0.01
905 208 0.03
906 487 0.07
907 86 0.01
908 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
CGTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCGACGATC
GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAC
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
CGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
CGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTT
GCGCATCCCGCCCCTTTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCATTAGGTCA
Found at i:1164462 original size:26 final size:26
Alignment explanation
Indices: 1164426--1164478 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1164416 GTTGACTTAG
*
1164426 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACCGAGTTCATTCCCAATCTAA
*
1164452 GCATACCGAGTTCTTTCCCAATCTAA
1 GCATACCGAGTTCATTCCCAATCTAA
1164478 G
1 G
1164479 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAATCTAA
Found at i:1165373 original size:26 final size:25
Alignment explanation
Indices: 1165333--1165384 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
1165323 GTTGACTTAG
1165333 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
1165358 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACG-AGTTCATTCCCAGTCTAA
1165384 G
1 G
1165385 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:1168676 original size:26 final size:26
Alignment explanation
Indices: 1168646--1168698 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1168636 GTTGACTTAG
*
1168646 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
1168672 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1168698 G
1 G
1168699 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:1169570 original size:26 final size:26
Alignment explanation
Indices: 1169534--1169585 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1169524 TTTAACTTAG
1169534 GCATACGGAGTTCATTCAAAGTCTAA
1 GCATACGGAGTTCATTCAAAGTCTAA
**
1169560 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCAAAGTCTAA
1169586 TATTGGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCAAAGTCTAA
Found at i:1170467 original size:26 final size:26
Alignment explanation
Indices: 1170437--1170489 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1170427 GTTGACTTAG
*
1170437 GCATACATAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCATAGTCTAA
* *
1170463 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCATAGTCTAA
1170489 G
1 G
1170490 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCATAGTCTAA
Found at i:1170813 original size:902 final size:897
Alignment explanation
Indices: 1168281--1171337 Score: 4120
Period size: 902 Copynumber: 3.4 Consensus size: 897
1168271 GTTTCGAAAA
* *
1168281 TCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAA
1 TCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
1168346 AATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC-AATCCAC
66 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAA-CCAC
* *
1168410 GGCTTGCGCAACCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCCACCACCCTGCCCGTTCGTTTCG
130 GGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCC-GC-CCC-GCCCG-T-GTTTCG
* * * * * * * * *
1168474 TAGGTTGTCTTAGGCATACGGGGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTACGGT
189 TCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGT
* * * * * * * *
1168539 AGCAAGATTGGCAGTACGCAGAGGGGAACCTAGCCGATCCCCGGCTTAAGCATCTCACCCCTCTG
254 AGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTACGCATCCCACCCCTCTG
* ** ** * *
1168604 GCCGGCTGAGCGCCCGTATTCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAA-T
319 GCCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CAAAGT
* * **
1168668 CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGC
383 CTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGC
*
1168733 TGGGCTCGGGCATATGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGTCGGAGCATCGTC
448 TGGGCTCGGGCATATGCTGGTGCCGCACTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTC
* * * **
1168797 GGAGAACCTGAACGGCGACATTGGGGTTTAGGTGATCGGGGGGGCCGGGGGGGTGTGCACACATG
512 GGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATC-GGGGGGCCGGGGGGGTGTGCACACATG
** *
1168862 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTTCCCCCTATCCCTCATCAAACCTCAAGAA
576 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
1168927 CTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTTGGCATTAAAGTGTCT
641 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
1168992 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTT--T--A-GTT
706 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGCTGAATGTT
* *
1169051 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAAACTCCGTCCGA
771 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCGTCCGA
* * *
1169116 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAG
836 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAGTCATGAAAAATAGAAAACGAG
*
1169178 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAA
1 TCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * * * * *
1169242 AATGGCATTGGCACGTAGAAATATGAACATTTGCATAAACCCATCTACCACCGTATCGATCCACG
66 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACG
* * * * * ***
1169307 CCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGAGCCCGCCCG-CCCGCTCGT-TTTC-TTTTTTG
131 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCCCGTGTTTCGTCGGTTG
* * * ** * * * *
1169369 GCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGACTGGACCAAGAGTTGTGGCAGCAGGA
196 GCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGA
* * * * * *
1169434 TCGCCAGCACACAGAGGGGGACCC-GACCGATCCCCGGCTTGCGCGA-CCCGCGCCTCTAGCCGG
261 TCGACAGCACGCAGAGGGGGACCCAG-CCGATCCCCGGCTTACGC-ATCCCACCCCTCTGGCCGG
** * * * * *
1169497 CTGAGCGTCCGCACGCTCGTTTCGTGGTTTAACTTAGGCATACGGAGTTCATTCAAAGTCTAAGC
324 CTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCAAAGTCTAAGC
* * * *
1169562 ATACGGAGTTCATT-CTCAGTCTAATATTGGACCAGACCGAGGGTTGCGGCAGTACATGCTGGGC
389 ATACGGAGTTCATTCCT-AGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * *
1169626 TTGGGCATATGCTGGTGCCGCACTTTTCTTCGTCGGGGCACCATCGTCGGAGCAACGTCAGAGAA
453 TCGGGCATATGCTGGTGCCGCACTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* * *
1169691 CCTGACCGGCGGCATTGGGGCTCCGACGATCGGGGGGGCC-GGGGGGTGTGCACACATGTTGTGC
518 CCTGACCGGCGGCATTGGGGTTTCGACGATC-GGGGGGCCGGGGGGGTGTGCACACATGATGTGC
* * * *
1169755 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTACCCCTCATCAAACCTTGCGAAATCACA
582 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
1169820 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAGGTGTCTGAAATG
647 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
1169885 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGT
712 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-GCTGAATGTTTTTGT
* *
1169950 GCATGCCAACAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCGTCTGAAAAAA
776 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCGTCCGAAAAAA
*
1170015 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAGTCATGAAAAATAGAAAACGAG
841 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAGTCATGAAAAATAGAAAACGAG
* *
1170072 TCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCGTAAA
1 TCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
1170137 AATGGCATTGGCATGCAGAAATAAGAAGATATGCCTAAATCCACCTACCACCCTATCGAACCACG
66 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACG
* *
1170202 GCTTGCGCATCCCGCCTCTCTAGCCGACGTAGTGCCCGCCCGCCCTCCCGCCCGCTTGTTTCGTC
131 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CCCGCCCG--TGTTTCGTC
** * ** * * *
1170267 GGTTGGCTTAGGCATACAGAGTTCATTTTCAATCTGAGATTGGACCAGACCGACGGCTGTGGTAG
191 GGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGTAG
* * * * * *
1170332 CAGGATTGACAGTACGCAGAGGGGGACCCGGTCGATCCCCAGCTTACGCATCCCACCCCTATGGC
256 CAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTACGCATCCCACCCCTCTGGC
* * *
1170397 CGGCTGAGCACCCACATGCTCGTTTCATGGGTTGACTTAGGCATACATAGTTCATTCATAGTCTA
321 CGGCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCAAAGTCTA
* ** * *
1170462 AGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATTGAGGGTTGTGGTAGCACATGCTGG
386 AGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * ** *
1170527 GCTCGGGCATGTGCTGGTGCCCCA-TTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCGGAG
451 GCTCGGGCATATGCTGGTGCCGCACTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* *
1170591 AACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGTGTCGGGGGGGTGTGCGCACATGATGT
516 AACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGG-GCCGGGGGGGTGTGCACACATGATGT
1170656 GCGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
580 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
1170720 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
645 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
*
1170785 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTT
710 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-GCTGAATGTTTTT
*
1170850 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
774 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCGTCCGAAAA
* * ** *
1170915 AATTTTCAAAAATCTCGAACCGCAAAAAGTTTTGAAAGTGATGAAAAATAGAAAACGAG
839 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAGTCATGAAAAATAGAAAACGAG
*
1170974 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
1 TCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
1171039 AATGGCATTGGCAAGTAGAAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATA-CA
66 AATGGCATTGGCATGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-ACCA
* * * *
1171103 CAGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGT----GCCCG-CCCGCTC--GTTTCGTCGGT
129 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCCCGTGTTTCGTCGGT
* * * *
1171161 TGGCTTAGGCATACAGAGCTCATTCCCTATCTAAGATCAGACCATACCAAGGGTTGCGGTAGCAG
194 TGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAG
* ** * * *
1171226 GATCGACAGCACGCTGAGGGGGACCCAGCTAATCCCCGGCTTGCACATCCCA-TCCTCTGGCCGG
259 GATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGG
* * *
1171290 CTGAGCACCCATACGCTCATTTCATGGGTTGACTTAAGCATACAGAGT
324 CTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGT
1171338 GCTGCATTTT
Statistics
Matches: 1891, Mismatches: 239, Indels: 67
0.86 0.11 0.03
Matches are distributed among these distances:
887 187 0.10
888 307 0.16
889 6 0.00
890 53 0.03
891 108 0.06
892 4 0.00
893 4 0.00
894 180 0.10
895 100 0.05
896 92 0.05
897 59 0.03
899 12 0.01
901 6 0.00
902 438 0.23
903 331 0.18
904 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
TCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCACG
GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCCCGTGTTTCGTCGGTTG
GCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGA
TCGACAGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCT
GAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCAAAGTCTAAGCAT
ACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
GGCATATGCTGGTGCCGCACTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
GACCGGCGGCATTGGGGTTTCGACGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGCTGAATGTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCGTCCGAAAAAATTTTA
AAAAATCTCGAACCGTAAAAAGTTTCAAAAGTCATGAAAAATAGAAAACGAG
Found at i:1172164 original size:26 final size:26
Alignment explanation
Indices: 1172135--1172187 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1172125 GTTGACTTAG
1172135 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
1172161 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1172187 G
1 G
1172188 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1173070 original size:26 final size:26
Alignment explanation
Indices: 1173033--1173116 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
1173023 CGTGGGTTGA
*
1173033 CTAAGGCATACGGAGTTCATTCCTAGT
1 CTAA-GCATACGGAGTTCATTCCCAGT
1173060 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
1173086 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
1173112 CTAAG
1 CTAAG
1173117 ATAGGACCGA
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
26 52 0.93
27 4 0.07
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:1174016 original size:26 final size:26
Alignment explanation
Indices: 1173976--1174028 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1173966 GTTGACTTAC
*
1173976 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
1174002 GCATGCGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
1174028 G
1 G
1174029 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:1177825 original size:26 final size:26
Alignment explanation
Indices: 1177789--1177838 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1177779 GTTGATTTAG
1177789 GCATACAGAGTTCATTCCCAGTCTGA
1 GCATACAGAGTTCATTCCCAGTCTGA
*
1177815 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
1177839 AAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTGA
Found at i:1178191 original size:889 final size:883
Alignment explanation
Indices: 1176033--1178714 Score: 3469
Period size: 889 Copynumber: 3.0 Consensus size: 883
1176023 GATGACATAG
* * * *
1176033 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAGT-GAGGGTTGTGGCAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-TCGAGGGTTGCGGCAGCACATGCTCG
* * * *
1176097 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCAGGACACCATCGTCGGAGCATCGTTGGAG
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGT-TGGGCACCA---TC---G--TC---GGAG
* * * *
1176162 AACCTGACCGACGACATTGGGGTTCTGGCGATCGAGGGGGCTGGGGGATGTGGGCACATGATGTG
118 AACCTGACCGACGGCATTGGGGTTC-CGCGATCG-GGGGGCTGGGGGGTGTGCGCACATGATGTG
* *
1176227 CGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
181 CGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
1176292 ACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTTGCAATTAAAGTGTCTGAAAT
246 A-CCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1176357 GGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
310 AGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * * * * *
1176422 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTCTGGGGCAAAAAATCCTTTTGAAAAA
375 TGCATGCCAACAAAAATATGAGGATCATGTCTA-CAAGTTTGGGGC-CAAAATTCATTTCAAAAA
* * *
1176487 ATTTTAAAAATTCTAGAA-CTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCT
438 ATTTTAAAAAATCTCGAACCT-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
1176551 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
502 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
1176616 ATTGGCATGCAAAAATATGAAGATGAGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
567 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
1176681 ACATCCCATCTCTCTGGCCGAC--ACA-G--TGCCCGCCTG--C-C-CGCTCGTTTCATCGGTTG
632 ACATCCCATCTCTCTGGCCGACGTA-ATGCCCGCCCGCCCGCCCGCTCGCTCGTTTCATCGGTTG
** ** *
1176737 GCTTAGGCATACGGACTTCATTCCCAGTCTAAGATTAGACCAAACCAAGGGTTGCGGCAGCAAGA
696 GCTTAGGCATAC-GAAGTCATT-CCAGTCTAAGATTAGACCGGACCAAGGGTTGCGGCAGCAGGA
* * * ** *
1176802 TTGCCAGCATGTAGAAAGGGACCCGATTGATCCCCGGCTTGTGCAT-TCCACCCCTCTGGCCGGC
759 TTGACAGCACGTAGAAGGGGACCCGACCGATCCCCGGCTTGTGCATCT-C-GCCCTCTGGCCGGC
* * *
1176866 TGAGCGCCCGAACGCTCGTTTCGTTGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAA
822 TGAGCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1176928 GCATATGGAGTTCAATCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGC-CGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTC-G
* * * * * * * *
1176992 GCTCAGGCATATGCTGGTGCCGCATTTTGTCTTTG-TCGG-AGCGTCGTCGAAGAACCTGAGCGG
65 GCTCAGGCATGTGCTGGTGCCGCATTTT-TCTTCGTTGGGCACCATCGTCGGAGAACCTGACCGA
*
1177055 CGGCGTTGGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
129 CGGCATTGGGGTTCCG-CGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * * * **
1177120 TTGCTTGGCCTTTCTATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCACACCCCGTTAAAG
193 GTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC-TTAAAG
* * * *
1177185 AGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAAATTGGGAAACTTTT
257 AGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTT
* *
1177250 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAACA
322 TTCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
1177315 AAAGTATGAGGATCATGTCCACGAAGTTTGGGGCCAAAATTCATTTCAAAAAATTTTAAAAAATC
387 AAAATATGAGGATCATGTCTAC-AAGTTTGGGGCCAAAATTCATTTCAAAAAATTTTAAAAAATC
** *
1177380 TCGAACCTTAAAAAGTTTCAAAAATCACGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTC
451 TCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
1177445 ATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACACAGAA
516 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
* * **
1177510 ATATGAAGATGTGCCTAAACTCACCAACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTC
581 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCATCTCTC
** *
1177575 TAACCGACGTAATGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAA
646 TGGCCGACGTAATGCCCGCCCGCCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGAA
* ** * *
1177640 GTCATTCTCAGTCCAAGATTAGACCGGACTGAGGGTTGCGGCAGCAGGATTGGCAGCACGTAGAT
711 GTCATTC-CAGTCTAAGATTAGACCGGACCAAGGGTTGCGGCAGCAGGATTGACAGCACGTAGAA
* * *
1177705 GGGGACCCGACCGATCCCCGGCTTGCGCATCTCGCCCTTCTGGCCAGCTTAGCGCCCGCACGCTC
775 GGGGACCCGACCGATCCCCGGCTTGTGCATCTCGCCC-TCTGGCCGGCTGAGCGCCCGCACGCTC
* * * * *
1177770 GTTTTGTGGGTTGATTTAGGCATACAGAGTTCATTCCCAGTCTGA
839 GTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
1177815 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGATAGCACATGCTCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTCGG
1177880 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGAACCTGACCGAC
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTT-GGGCACCATCGTCGGAGAACCTGACCGAC
* *
1177945 GGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
130 GGCATTGGGGTTCC-GCGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
1178010 TACTTGGGCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAG
194 TACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAG
1178075 CTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAAGTGTCTGAAATAGGGACACTTTTT
259 CTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAAGTGTCTGAAATAGGGACACTTTTT
* *
1178140 TCAAATGTTTACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCGGTGCCAA-A
323 TCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC-ATGCCAACA
*
1178204 AAAATATGAGGATCATGTCTATCAAGTTTGGGGCCAAAATTCGTTTCAAAAAAATTTTAAAAAAT
387 AAAATATGAGGATCATGTCTA-CAAGTTTGGGGCCAAAATTCATTTC-AAAAAATTTTAAAAAAT
* *
1178269 C-CTG-ACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACT
450 CTC-GAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
1178332 TCACCGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATACAAATGGCATTGGCACGCA
514 TCA-CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * * * *
1178397 GAAATATAAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGACATGCGCATCCTATCT
578 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCATCT
* * *
1178462 CTCTGGCC-AGTGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGCCCGCTCATTTCATCGGTTGGCT
643 CTCTGGCCGA-CGTAATGCCCG--C--CCGCCCGCCCGCT----CGCTCGTTTCATCGGTTGGCT
* * * * * ** *
1178526 TAGGCATACGGAGTTCATTCCTACTATAAGATCAGACGGGACCAAGGGTTATGGCAGCAGGATCG
699 TAGGCATACGAAG-TCATTCC-AGTCTAAGATTAGACCGGACCAAGGGTTGCGGCAGCAGGATTG
* * * *
1178591 ACAGCACGCA-AAGGGGGTCCCGGCCGATCCCCGGCTTGTGCATCCCGCCACTCTGGCCGGCTGA
762 ACAGCACGTAGAA-GGGGACCCGACCGATCCCCGGCTTGTGCATCTCGCC-CTCTGGCCGGCTGA
* * * * *
1178655 GCGCCCGCACGCTCATTTCATCCGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAA
825 GCGCCCGCACGCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1178714 G
1 G
1178715 ATCAGACCAG
Statistics
Matches: 1550, Mismatches: 194, Indels: 82
0.85 0.11 0.04
Matches are distributed among these distances:
880 213 0.14
881 243 0.16
882 32 0.02
884 8 0.01
885 2 0.00
886 10 0.01
887 229 0.15
888 76 0.05
889 308 0.20
890 155 0.10
892 1 0.00
893 2 0.00
894 14 0.01
895 78 0.05
896 5 0.00
898 33 0.02
899 140 0.09
900 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (883 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTCGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGCACCATCGTCGGAGAACCTGACCGACG
GCATTGGGGTTCCGCGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCT
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCA
AATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TATGAGGATCATGTCTACAAGTTTGGGGCCAAAATTCATTTCAAAAAATTTTAAAAAATCTCGAA
CCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCATCTCTCTGGCC
GACGTAATGCCCGCCCGCCCGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTCAT
TCCAGTCTAAGATTAGACCGGACCAAGGGTTGCGGCAGCAGGATTGACAGCACGTAGAAGGGGAC
CCGACCGATCCCCGGCTTGTGCATCTCGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
CGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1178862 original size:157 final size:158
Alignment explanation
Indices: 1178505--1178900 Score: 458
Period size: 157 Copynumber: 2.5 Consensus size: 158
1178495 CCCGCTCGCC
* * * * * * **
1178505 CGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTACTATAAGATCAGACGGGACCA
1 CGCTCATTTCATCCGTTGACATAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTG
* * * *
1178570 AGGGTTATGGCAGCAGGATCGACAGCACGCAAAGGGGGTCCCGGCCGATCCCCGGCTTGTGCATC
66 AGGGTTGTGGCAGCAGGATCGACAGCAC-CAAAGGGGGTCCCGACCGATCCACGACTTGTGCATC
*
1178635 CCGCCACTCTGGCCGGCTGAGCGCCCGCA
130 CCGCCACTCTGGCCGGCTGAGCCCCCGCA
* * * *
1178664 CGCTCATTTCATCCGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACTG
1 CGCTCATTTCATCCGTTGACATAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTG
* * * *
1178729 AGGGTTGTAGCAGCAGGATCGACAGCA-CACAGGGGGAT-TCGACCGATCCACTACTT-TCGCAT
66 AGGGTTGTGGCAGCAGGATCGACAGCACCAAAGGGGG-TCCCGACCGATCCACGACTTGT-GCAT
* *
1178791 CCCGCC-CTTCTGGCTGGCTGAGCCCCCGTA
129 CCCGCCAC-TCTGGCCGGCTGAGCCCCCGCA
* * ** * * *
1178821 CGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCGGAGTG
1 CGCTCATTTCATCCGTTGACATAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTG
1178886 AGGGTTGTGGCAGCA
66 AGGGTTGTGGCAGCA
1178901 CATGCTAGGC
Statistics
Matches: 203, Mismatches: 31, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
156 2 0.01
157 118 0.58
158 1 0.00
159 82 0.40
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
CGCTCATTTCATCCGTTGACATAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACTG
AGGGTTGTGGCAGCAGGATCGACAGCACCAAAGGGGGTCCCGACCGATCCACGACTTGTGCATCC
CGCCACTCTGGCCGGCTGAGCCCCCGCA
Found at i:1179736 original size:26 final size:27
Alignment explanation
Indices: 1179707--1179760 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
1179697 GTTGACTTAG
1179707 GCATACG-AGTTCATTCCCCAGTCTAA
1 GCATACGAAGTTCATTCCCCAGTCTAA
1179733 GCATACGAAGTTCATTCCCCAGTCTAA
1 GCATACGAAGTTCATTCCCCAGTCTAA
1179760 G
1 G
1179761 ATCGGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.26
Consensus pattern (27 bp):
GCATACGAAGTTCATTCCCCAGTCTAA
Done.