Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 61 of 129
Found at i:9250488 original size:81 final size:83
Alignment explanation
Indices: 9250402--9250568 Score: 212
Period size: 81 Copynumber: 2.0 Consensus size: 83
9250392 GAAGTTTTAC
* * *
9250402 TTAGGATTCTGACTGAAACTTTATTAACTTTTTACCCCAAATTCTCATTTCTGCGGTG-TATTTT
1 TTAGGATTCTAACTGAAACTTTATTAACTTTTTACCCCAAATTCTCATCTCTGAGGTGATATTTT
*
9250466 T-TTTTTTTGCTCTCTTT
66 TCTTTCTTTGCTCTCTTT
** * * *
9250483 TTAGGATTCTAACTGAAGTTTTATTCACTTTTTGCCTCAAATTCTCATCTCTGAGGTGCATATTT
1 TTAGGATTCTAACTGAAACTTTATTAACTTTTTACCCCAAATTCTCATCTCTGAGGTG-ATATTT
* *
9250548 TTCTTTCTTTGTTCTTTTT
65 TTCTTTCTTTGCTCTCTTT
9250567 TT
1 TT
9250569 TCTCTTTTTT
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 50 0.69
83 7 0.10
84 15 0.21
ACGTcount: A:0.18, C:0.18, G:0.11, T:0.53
Consensus pattern (83 bp):
TTAGGATTCTAACTGAAACTTTATTAACTTTTTACCCCAAATTCTCATCTCTGAGGTGATATTTT
TCTTTCTTTGCTCTCTTT
Found at i:9255750 original size:37 final size:35
Alignment explanation
Indices: 9255700--9255794 Score: 100
Period size: 37 Copynumber: 2.6 Consensus size: 35
9255690 TAAGATGTGC
9255700 ATGGAATGCATGTATTATTTATCCATGCATGCATGAA
1 ATGGAATGCATGTATTATTTATCCATG--TGCATGAA
* * ** *
9255737 ATGGAATGCATGTACTATCTATTGATGTGGATGAA
1 ATGGAATGCATGTATTATTTATCCATGTGCATGAA
**
9255772 ATGGAATATATGTATTATCTTAT
1 ATGGAATGCATGTATTAT-TTAT
9255795 TATGATGTGC
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
35 22 0.46
36 3 0.06
37 23 0.48
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (35 bp):
ATGGAATGCATGTATTATTTATCCATGTGCATGAA
Found at i:9260353 original size:15 final size:15
Alignment explanation
Indices: 9260333--9260361 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
9260323 GAATGTCTAT
9260333 AGTAAATATGCCTAC
1 AGTAAATATGCCTAC
9260348 AGTAAATATGCCTA
1 AGTAAATATGCCTA
9260362 TTTTCGTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (15 bp):
AGTAAATATGCCTAC
Found at i:9260508 original size:19 final size:19
Alignment explanation
Indices: 9260481--9260527 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
9260471 CTAAATTCTA
9260481 AAACCTAAA-TCCTAAAC-T
1 AAACCTAAACT-CTAAACTT
9260499 AAACCTTAAACTCTAAACTT
1 AAACC-TAAACTCTAAACTT
9260519 AAA-CTAAAC
1 AAACCTAAAC
9260528 CTACCTAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 10 0.38
19 11 0.42
20 5 0.19
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (19 bp):
AAACCTAAACTCTAAACTT
Found at i:9260698 original size:20 final size:20
Alignment explanation
Indices: 9260673--9260725 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
9260663 TAAACCCAGC
9260673 TTTAAACCCTAAACTCTAAA
1 TTTAAACCCTAAACTCTAAA
*
9260693 TTTAAACACTAAACTCTAAA
1 TTTAAACCCTAAACTCTAAA
* *
9260713 TTCAAACCTTAAA
1 TTTAAACCCTAAA
9260726 ACCAAACCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (20 bp):
TTTAAACCCTAAACTCTAAA
Found at i:9261322 original size:21 final size:20
Alignment explanation
Indices: 9261298--9261339 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
9261288 ACAAATCACA
9261298 AAATGTTCTTTT-AATAATTTT
1 AAAT-TTCTTTTAAAT-ATTTT
*
9261319 AAATTTGTTTTAAATATTTT
1 AAATTTCTTTTAAATATTTT
9261339 A
1 A
9261340 TTAAAAAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (20 bp):
AAATTTCTTTTAAATATTTT
Found at i:9263789 original size:18 final size:19
Alignment explanation
Indices: 9263727--9263790 Score: 60
Period size: 18 Copynumber: 3.3 Consensus size: 19
9263717 CTAGTAAGAT
9263727 TAAAATTAATAA-TAATGA
1 TAAAATTAATAATTAATGA
* * *
9263745 TAAGATTAATTATTATAGCGA
1 TAAAATTAATAATTA-A-TGA
9263766 TAAAAATTAA-AATTAATGA
1 T-AAAATTAATAATTAATGA
9263785 TAAAAT
1 TAAAAT
9263791 ATGTGTTTGG
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
18 15 0.42
19 5 0.14
20 2 0.06
21 7 0.19
22 7 0.19
ACGTcount: A:0.56, C:0.02, G:0.08, T:0.34
Consensus pattern (19 bp):
TAAAATTAATAATTAATGA
Found at i:9264362 original size:2 final size:2
Alignment explanation
Indices: 9264355--9264388 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
9264345 GTTAACTTTT
*
9264355 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9264389 GAAATGAAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:9269317 original size:22 final size:21
Alignment explanation
Indices: 9269261--9269318 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
9269251 AAAACTTGAG
*
9269261 ATAAATGCACTGAAAAATAAA
1 ATAAATGCACTTAAAAATAAA
9269282 AGTAAAT--ACGTTAAAAGATAAA
1 A-TAAATGCAC-TTAAAA-ATAAA
*
9269304 ATAAATGCATTTAAA
1 ATAAATGCACTTAAA
9269319 GTAAAAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
20 2 0.07
21 11 0.37
22 16 0.53
23 1 0.03
ACGTcount: A:0.59, C:0.07, G:0.10, T:0.24
Consensus pattern (21 bp):
ATAAATGCACTTAAAAATAAA
Found at i:9269319 original size:21 final size:21
Alignment explanation
Indices: 9269261--9269324 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
9269251 AAAACTTGAG
*
9269261 ATAAATGCACTGAAAA-ATAAA
1 ATAAATGCA-TTAAAAGATAAA
* *
9269282 AGTAAATACGTTAAAAGATAAA
1 A-TAAATGCATTAAAAGATAAA
*
9269304 ATAAATGCATTTAAAG-TAAA
1 ATAAATGCATTAAAAGATAAA
9269324 A
1 A
9269325 ATAATTAAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
20 5 0.14
21 18 0.51
22 12 0.34
ACGTcount: A:0.59, C:0.06, G:0.11, T:0.23
Consensus pattern (21 bp):
ATAAATGCATTAAAAGATAAA
Found at i:9271525 original size:23 final size:22
Alignment explanation
Indices: 9271474--9271526 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 22
9271464 TTTGTTCTTT
*
9271474 AAATTCAAGTTATTTTAAATTC
1 AAATTCAAGTTATTTAAAATTC
**
9271496 ATGTTCAAGTTCATTTAAAATTC
1 AAATTCAAGTT-ATTTAAAATTC
9271519 AAATTCAA
1 AAATTCAA
9271527 ATTTATTTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 9 0.36
23 16 0.64
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.42
Consensus pattern (22 bp):
AAATTCAAGTTATTTAAAATTC
Found at i:9271534 original size:23 final size:23
Alignment explanation
Indices: 9271474--9271534 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 23
9271464 TTTGTTCTTT
* *
9271474 AAATTC-AAGTTATTTTAAATTC
1 AAATTCAAATTTATTTAAAATTC
** * *
9271496 ATGTTCAAGTTCATTTAAAATTC
1 AAATTCAAATTTATTTAAAATTC
9271519 AAATTCAAATTTATTT
1 AAATTCAAATTTATTT
9271535 TTGTAGCTTT
Statistics
Matches: 28, Mismatches: 10, Indels: 1
0.72 0.26 0.03
Matches are distributed among these distances:
22 4 0.14
23 24 0.86
ACGTcount: A:0.39, C:0.10, G:0.05, T:0.46
Consensus pattern (23 bp):
AAATTCAAATTTATTTAAAATTC
Found at i:9272572 original size:18 final size:18
Alignment explanation
Indices: 9272539--9272575 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
9272529 TTCACTCCTT
*
9272539 TTGTTACTCTTATCACTC
1 TTGTTACTCTCATCACTC
*
9272557 TTGTTACTCTCCTCACTC
1 TTGTTACTCTCATCACTC
9272575 T
1 T
9272576 CGCCCCCATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.32, G:0.05, T:0.49
Consensus pattern (18 bp):
TTGTTACTCTCATCACTC
Found at i:9276677 original size:13 final size:13
Alignment explanation
Indices: 9276659--9276684 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9276649 AAATCATACA
9276659 AAAAATATTATAT
1 AAAAATATTATAT
9276672 AAAAATATTATAT
1 AAAAATATTATAT
9276685 CATACCAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AAAAATATTATAT
Found at i:9276941 original size:16 final size:16
Alignment explanation
Indices: 9276922--9276957 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
9276912 TAATAAGGAG
9276922 AAAAT-AAATAGAAAAT
1 AAAATAAAATA-AAAAT
9276938 AAAATAAAATAAAAAT
1 AAAATAAAATAAAAAT
9276954 AAAA
1 AAAA
9276958 AACAAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.81, C:0.00, G:0.03, T:0.17
Consensus pattern (16 bp):
AAAATAAAATAAAAAT
Found at i:9276954 original size:6 final size:6
Alignment explanation
Indices: 9276927--9277008 Score: 60
Period size: 6 Copynumber: 13.3 Consensus size: 6
9276917 AGGAGAAAAT
* * * *
9276927 AAATAGA AAAT-A AAAT-A AAATAA AAATAAA AAACAA AAACAA AGACAA
1 AAATA-A AAATAA AAATAA AAATAA AAAT-AA AAATAA AAATAA AAATAA
* *
9276975 AAAGAA AAATGAA AAATAA AAAGAA AAATGAA AA
1 AAATAA AAAT-AA AAATAA AAATAA AAAT-AA AA
9277009 CCTACGATCG
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
5 10 0.16
6 35 0.55
7 19 0.30
ACGTcount: A:0.79, C:0.04, G:0.07, T:0.10
Consensus pattern (6 bp):
AAATAA
Found at i:9277003 original size:19 final size:19
Alignment explanation
Indices: 9276943--9277008 Score: 73
Period size: 19 Copynumber: 3.5 Consensus size: 19
9276933 AAAATAAAAT
9276943 AAAAT-AAAAATAAAAA-A
1 AAAATGAAAAATAAAAAGA
** * *
9276960 CAAAAACAAAGACAAAAAGA
1 -AAAATGAAAAATAAAAAGA
9276980 AAAATGAAAAATAAAAAGA
1 AAAATGAAAAATAAAAAGA
9276999 AAAATGAAAA
1 AAAATGAAAA
9277009 CCTACGATCG
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
18 4 0.10
19 34 0.87
20 1 0.03
ACGTcount: A:0.80, C:0.05, G:0.08, T:0.08
Consensus pattern (19 bp):
AAAATGAAAAATAAAAAGA
Found at i:9278287 original size:42 final size:43
Alignment explanation
Indices: 9278238--9278395 Score: 126
Period size: 43 Copynumber: 3.6 Consensus size: 43
9278228 CTTAATAATG
* *
9278238 GCTTTGAAACTTT-TGAAAATGAAATAC-TCCACCTCAACAAAA
1 GCTTTGAAACTTTATAAAAATAAAATACTTCC-CCTCAACAAAA
* * * *
9278280 GTTTTGAAACTTTATAAAAATAAAATACTTTCCCTTAACAAAG
1 GCTTTGAAACTTTATAAAAATAAAATACTTCCCCTCAACAAAA
* * * *
9278323 GCTTTGAAACTTTCAAAAAAAAAAAAAAAAC-TCCCCTTCAACAAAG
1 GCTTTGAAACTTT---ATAAAAATAAAATACTTCCCC-TCAACAAAA
*
9278369 GCTTT-AAGACTTTTAAAAAAATAAAAT
1 GCTTTGAA-AC-TTTATAAAAATAAAAT
9278396 GTTCCCTCAA
Statistics
Matches: 94, Mismatches: 14, Indels: 14
0.77 0.11 0.11
Matches are distributed among these distances:
42 12 0.13
43 33 0.35
44 13 0.14
45 6 0.06
46 27 0.29
47 3 0.03
ACGTcount: A:0.47, C:0.17, G:0.08, T:0.28
Consensus pattern (43 bp):
GCTTTGAAACTTTATAAAAATAAAATACTTCCCCTCAACAAAA
Found at i:9278726 original size:27 final size:28
Alignment explanation
Indices: 9278696--9278759 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 28
9278686 AATTTTATTT
*
9278696 TATATGATTTTTATTTTT-ATTTTTACA
1 TATATGATTTTTATTTTTAATTTATACA
* *
9278723 TATAT-AATTTTATTTTTAATTTATATA
1 TATATGATTTTTATTTTTAATTTATACA
*
9278750 TATGTGATTT
1 TATATGATTT
9278760 AAATATAATC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
26 11 0.37
27 16 0.53
28 3 0.10
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.64
Consensus pattern (28 bp):
TATATGATTTTTATTTTTAATTTATACA
Found at i:9278745 original size:25 final size:26
Alignment explanation
Indices: 9278704--9278752 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
9278694 TTTATATGAT
*
9278704 TTTTATTTTTATTTTTACATATATAA
1 TTTTATTTTTATATTTACATATATAA
*
9278730 TTTTATTTTTA-ATTTATATATAT
1 TTTTATTTTTATATTTACATATAT
9278753 GTGATTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (26 bp):
TTTTATTTTTATATTTACATATATAA
Found at i:9281170 original size:11 final size:11
Alignment explanation
Indices: 9281154--9281193 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
9281144 TATAAAATGG
9281154 ATAAAATGAAA
1 ATAAAATGAAA
9281165 ATAAAAATGAAA
1 AT-AAAATGAAA
*
9281177 ATTAAATGAAA
1 ATAAAATGAAA
*
9281188 AGAAAA
1 ATAAAA
9281194 AAAAAACCTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.17
Consensus pattern (11 bp):
ATAAAATGAAA
Found at i:9281173 original size:12 final size:12
Alignment explanation
Indices: 9281156--9281194 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
9281146 TAAAATGGAT
9281156 AAAATGAAAATA
1 AAAATGAAAATA
9281168 AAAATGAAAAT-
1 AAAATGAAAATA
* *
9281179 TAAATGAAAAGA
1 AAAATGAAAATA
9281191 AAAA
1 AAAA
9281195 AAAAACCTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.15
Consensus pattern (12 bp):
AAAATGAAAATA
Found at i:9291545 original size:15 final size:15
Alignment explanation
Indices: 9291511--9291545 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
9291501 ATGGTTGTAA
*
9291511 AAAAAATAAAATAAT
1 AAAAAATAAAAAAAT
9291526 AAAAAATAAAAAAAT
1 AAAAAATAAAAAAAT
9291541 GAAAA
1 -AAAA
9291546 TGAAAACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.83, C:0.00, G:0.03, T:0.14
Consensus pattern (15 bp):
AAAAAATAAAAAAAT
Found at i:9292147 original size:135 final size:136
Alignment explanation
Indices: 9291875--9292211 Score: 380
Period size: 135 Copynumber: 2.5 Consensus size: 136
9291865 TGAAATCTCA
* * * * *
9291875 AGAATTCAAGAAGATAGATTACTAAAGATGAAATCAAATGTTTCATGAAAAAAGAGAAGAAAAAA
1 AGAATTCAAGAAG-TTGATTACTAAAGATGAAGTCAAATGTTTCA-AAAAAAAAAAAAG-AAAAA
* *
9291940 TAGCTAAAAAAGAAAAAAAATACACCTAAGAGATGAAAGTCTGCAATAAAAAGTAAATAAAGCTT
63 GAGCTAAAAAAGAAAAAAAATACACCTAAGAGATGAAAGTCTGCAACAAAAAGTAAATAAAGCTT
*
9292005 CAGGAAAAT
128 CAAGAAAAT
9292014 AGAATTCAAGAAAGTTGATTACTAAAGATGAAGTCAAATG-TTCAAAAAAAAAAAAAGAAAAAGA
1 AGAATTCAAG-AAGTTGATTACTAAAGATGAAGTCAAATGTTTCAAAAAAAAAAAAAGAAAAAGA
*** * * * *
9292078 G-TAAAGAAAG-AAAGGCATACACCTCAGAGATGAAAGT-T-CAGGGCAAAAAGTGAATGAAGCT
65 GCTAAA-AAAGAAAAAAAATACACCTAAGAGATGAAAGTCTGCA--ACAAAAAGTAAATAAAGCT
9292139 TCAAGAAAAT
127 TCAAGAAAAT
* * * *
9292149 A-AATTTCAAGAAGTTGATTGCTAAAGATGAAGTCAATTGTTTGAAAAAAACAAAAAACAAAAA
1 AGAA-TTCAAGAAGTTGATTACTAAAGATGAAGTCAAATGTTTCAAAAAAA-AAAAAAGAAAAA
9292212 ACCAAAAAAA
Statistics
Matches: 172, Mismatches: 19, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
133 2 0.01
134 30 0.17
135 67 0.39
136 22 0.13
137 10 0.06
138 4 0.02
139 34 0.20
140 3 0.02
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.19
Consensus pattern (136 bp):
AGAATTCAAGAAGTTGATTACTAAAGATGAAGTCAAATGTTTCAAAAAAAAAAAAAGAAAAAGAG
CTAAAAAAGAAAAAAAATACACCTAAGAGATGAAAGTCTGCAACAAAAAGTAAATAAAGCTTCAA
GAAAAT
Found at i:9292373 original size:132 final size:132
Alignment explanation
Indices: 9292228--9292490 Score: 293
Period size: 132 Copynumber: 2.0 Consensus size: 132
9292218 AAAAATAATA
** ** * *
9292228 GGGGAAAACAAAGAAAAAAAGAAATTTACTTT-GGAAATGAGAGTCTGAGGCAA-AAGGTGAATG
1 GGGGAAAACAAAGAAAAAAAGAAATGCA-TTTAAAAAATGAGAGTCCGAGGCAATAA-ATGAATG
* * * * *
9292291 GAGCTTCAGGAAAATAGAATT-CAAGAAGTTGATTGCCAAAGA-TGAAGTCAAATG-TCCCAAAA
64 AAGCTTCAGGAAAATAGAATTGAAAAAAGTAGAATGCCAAA-ATTGAAGTCAAATGTTCCCAAAA
9292353 AAAAG
128 AAAAG
* * *
9292358 GGGGAGAAAGCAAAGAAATAAAGAAATGCATTTAAAAAATGAGAGTCCGGGGTAATAAATGAATG
1 GGGGA-AAA-CAAAGAAAAAAAGAAATGCATTTAAAAAATGAGAGTCCGAGGCAATAAATGAATG
* * *
9292423 AAGCTTTAGGAAAATAGAATTGAAAAAAGTAGAATGCCAAAATTGAAGTCTAATGTTTCCAAAAA
64 AAGCTTCAGGAAAATAGAATTGAAAAAAGTAGAATGCCAAAATTGAAGTCAAATGTTCCCAAAAA
9292488 AAA
129 AAA
9292491 AAAAAGATGA
Statistics
Matches: 109, Mismatches: 17, Indels: 10
0.80 0.12 0.07
Matches are distributed among these distances:
130 5 0.05
131 6 0.06
132 59 0.54
133 28 0.26
134 11 0.10
ACGTcount: A:0.49, C:0.09, G:0.23, T:0.19
Consensus pattern (132 bp):
GGGGAAAACAAAGAAAAAAAGAAATGCATTTAAAAAATGAGAGTCCGAGGCAATAAATGAATGAA
GCTTCAGGAAAATAGAATTGAAAAAAGTAGAATGCCAAAATTGAAGTCAAATGTTCCCAAAAAAA
AG
Found at i:9293874 original size:41 final size:41
Alignment explanation
Indices: 9293827--9293937 Score: 116
Period size: 41 Copynumber: 2.7 Consensus size: 41
9293817 TTTGCATTCA
9293827 CATCTACATCACAAAAAAGACATTTGCATTTGTATCACTAG
1 CATCTACATCACAAAAAAGACATTTGCATTTGTATCACTAG
* * * * *
9293868 TATCTACATCATGAAAAAA-ATATTCGTATTTGTATCACTAG
1 CATCTACATCA-CAAAAAAGACATTTGCATTTGTATCACTAG
* * ** *
9293909 CAACTATATCATGAGAAAGACATTTGCAT
1 CATCTACATCACAAAAAAGACATTTGCAT
9293938 CATCTGTATC
Statistics
Matches: 54, Mismatches: 14, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
40 4 0.07
41 44 0.81
42 6 0.11
ACGTcount: A:0.40, C:0.18, G:0.11, T:0.32
Consensus pattern (41 bp):
CATCTACATCACAAAAAAGACATTTGCATTTGTATCACTAG
Found at i:9294789 original size:22 final size:22
Alignment explanation
Indices: 9294750--9294797 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
9294740 TTTAGATTTG
* * *
9294750 TAAGACTTCCAGGTATAATCTC
1 TAAGACCTCCAGGCATAATCTA
*
9294772 TAAGACCTCTAGGCATAATCTA
1 TAAGACCTCCAGGCATAATCTA
9294794 TAAG
1 TAAG
9294798 TTTTTCGAGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (22 bp):
TAAGACCTCCAGGCATAATCTA
Found at i:9295083 original size:16 final size:16
Alignment explanation
Indices: 9295057--9295098 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
9295047 TAAATTACAA
*
9295057 AAAAAAAAAACAAAAC
1 AAAACAAAAACAAAAC
* *
9295073 ACAACAAAAACAAAAG
1 AAAACAAAAACAAAAC
9295089 AAAACAAAAA
1 AAAACAAAAA
9295099 AAATCATGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.83, C:0.14, G:0.02, T:0.00
Consensus pattern (16 bp):
AAAACAAAAACAAAAC
Found at i:9295092 original size:11 final size:10
Alignment explanation
Indices: 9295055--9295101 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
9295045 ATTAAATTAC
9295055 AAAAAAAA-A
1 AAAAAAAACA
*
9295064 AAACAAAACA
1 AAAAAAAACA
*
9295074 CAACAAAAACA
1 -AAAAAAAACA
*
9295085 AAAGAAAACA
1 AAAAAAAACA
9295095 AAAAAAA
1 AAAAAAA
9295102 TCATGAAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
9 7 0.23
10 15 0.50
11 8 0.27
ACGTcount: A:0.85, C:0.13, G:0.02, T:0.00
Consensus pattern (10 bp):
AAAAAAAACA
Found at i:9295283 original size:97 final size:96
Alignment explanation
Indices: 9295143--9295466 Score: 303
Period size: 98 Copynumber: 3.3 Consensus size: 96
9295133 GAAAAGAAAA
* ** * * *
9295143 ACAAGATTTTAAAGTTTTAAAGCCTTTGTTT-AAAGGGAGCCATTTTCAAATAAGACTTTAAAAT
1 ACAAGATTTTAAAGTTTTAAAGCCTCTGTTTGGGA-GGAACCATTTTCAGATAAGATTTTAAAAT
*
9295207 TTCGAAGCCTCTATTTAAGGGAGCCATTTTCAC
65 TT-GAAGCCTCTGTTTAAGGGAGCCATTTTCAC
* * * *
9295240 ACAAGATTTTAAAGTTTTGAAGCCTCTATTTGGGAGGAACCATTTTCAGACAAGATTTTAAAGTT
1 ACAAGATTTTAAAGTTTTAAAGCCTCTGTTTGGGAGGAACCATTTTCAGATAAGATTTTAAA-AT
* * * *
9295305 TTGATGCCTTTGTTT-GGGATGAGCCATTTTTAC
65 TTGAAGCCTCTGTTTAAGG--GAGCCATTTTCAC
* * * * * *
9295338 ACAAGATTTTAAAGTTTCAAAGCTTGTGTTTGGGA-GAAGCCATTTTTAGATAAAATTTTAAAGC
1 ACAAGATTTTAAAGTTTTAAAGCCTCTGTTTGGGAGGAA-CCATTTTCAGATAAGATTTTAAA-A
* * *
9295402 TTTAAAGCCTCTGTTTAAGGGGAACCATTTTCAA
64 TTTGAAGCCTCTGTTTAA-GGGAGCCATTTTCAC
* *
9295436 ACAAGATTGTTTTAAGTTTCAAAGCCTCTGT
1 ACAAGA-T-TTTAAAGTTTTAAAGCCTCTGT
9295467 GTATGGGGAG
Statistics
Matches: 184, Mismatches: 34, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
96 2 0.01
97 64 0.35
98 96 0.52
99 1 0.01
100 21 0.11
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (96 bp):
ACAAGATTTTAAAGTTTTAAAGCCTCTGTTTGGGAGGAACCATTTTCAGATAAGATTTTAAAATT
TGAAGCCTCTGTTTAAGGGAGCCATTTTCAC
Found at i:9295302 original size:49 final size:49
Alignment explanation
Indices: 9295141--9295491 Score: 273
Period size: 49 Copynumber: 7.1 Consensus size: 49
9295131 GAGAAAAGAA
* ** *
9295141 AAACAAGATTTTAAAGTTTTAAAGCCTTTGTTT-AAAGGGAGCCATTTTC
1 AAACAAGATTTTAAAGTTTTAAAGCCTCTGTTTGGGA-GGAACCATTTTC
* * * ** * ** *
9295190 AAATAAGACTTTAAAATTTCGAAGCCTCTATTTAAG-GGAGCCATTTTC
1 AAACAAGATTTTAAAGTTTTAAAGCCTCTGTTTGGGAGGAACCATTTTC
* * *
9295238 ACACAAGATTTTAAAGTTTTGAAGCCTCTATTTGGGAGGAACCATTTTC
1 AAACAAGATTTTAAAGTTTTAAAGCCTCTGTTTGGGAGGAACCATTTTC
* * * * * * *
9295287 AGACAAGATTTTAAAGTTTTGATGCCTTTGTTTGGGATGAGCCATTTTT
1 AAACAAGATTTTAAAGTTTTAAAGCCTCTGTTTGGGAGGAACCATTTTC
* * * * *
9295336 ACACAAGATTTTAAAGTTTCAAAGCTTGTGTTTGGGA-GAAGCCATTTTT
1 AAACAAGATTTTAAAGTTTTAAAGCCTCTGTTTGGGAGGAA-CCATTTTC
* * * * *
9295385 AGATAAAATTTTAAAGCTTTAAAGCCTCTGTTTAAGG-GGAACCATTTTC
1 AAACAAGATTTTAAAGTTTTAAAGCCTCTGTTT-GGGAGGAACCATTTTC
* * *
9295434 AAACAAGATTGTTTTAAGTTTCAAAGCCTCTGTGTAT-GG-GGAGCCATTTTC
1 AAACAAGA-T-TTTAAAGTTTTAAAGCCTCTGT-T-TGGGAGGAACCATTTTC
9295485 AAACAAG
1 AAACAAG
9295492 TTAAAAAAAA
Statistics
Matches: 247, Mismatches: 46, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
48 43 0.17
49 156 0.63
50 7 0.03
51 39 0.16
52 1 0.00
53 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.36
Consensus pattern (49 bp):
AAACAAGATTTTAAAGTTTTAAAGCCTCTGTTTGGGAGGAACCATTTTC
Found at i:9296306 original size:142 final size:140
Alignment explanation
Indices: 9296048--9296465 Score: 421
Period size: 143 Copynumber: 2.9 Consensus size: 140
9296038 TTGCGCTAAG
* * * * * *
9296048 AAAGTATAAAATTACTAAAATACCCAT-TCGAGGGTATTATCGTAATTTGACCTTTTCGAGCTTA
1 AAAGTATAAAATTACCAAAATACCCCTAT-AAGGGTATT-TCGTAATTTGCCCTTCT-GAGCTTG
* *
9296112 GATTTTTTTAAAACATTTTAGATCTTAATTTCATAATATTTCATGATTTTTGGTGCATTTGAAAT
63 GA-TTTTATAAAAC-TTTTA-ATCTTAATTTCATAATATTTCATGATTTTTGGTGCATTTAAAAT
* *
9296177 CGTAGCAGTACC-CCA
125 CATAGCAGTACCTCAA
* * *
9296192 AAAGTGTAAAATTACCAAAATACCCCTATAAGGGTATTTCATAATTTGCCCTTACTGAGCTCGGA
1 AAAGTATAAAATTACCAAAATACCCCTATAAGGGTATTTCGTAATTTGCCCTT-CTGAGCTTGGA
*
9296257 TTTTCATAAAACTTTCTAATCTTAATTTCATAATATTTCATGATTTTTGGTGCATTTAAAATTAT
65 TTTT-ATAAAACTTT-TAATCTTAATTTCATAATATTTCATGATTTTTGGTGCATTTAAAATCAT
**
9296322 AGTTGTACCTCAA
128 AGCAGTACCTCAA
* * * * * *
9296335 AAAGTATGAAGTTACCAAAATACCTCTATAAGGGTATTTTTGTAATTTACCCTTCCCGAGCTTGA
1 AAAGTATAAAATTACCAAAATACCCCTATAAGGGTA-TTTCGTAATTTGCCCTT-CTGAGCTTG-
* * * * * * *
9296400 AATTTTATGAAACTTTTTAAATCTCAATTTTATAATATTTTATAATTTTT-GTG-TTTTAAAATC
63 GATTTTATAAAAC-TTTT-AATCTTAATTTCATAATATTTCATGATTTTTGGTGCATTTAAAATC
9296463 ATA
126 ATA
9296466 AAAATGAGTA
Statistics
Matches: 231, Mismatches: 34, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
142 58 0.25
143 73 0.32
144 64 0.28
145 36 0.16
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.41
Consensus pattern (140 bp):
AAAGTATAAAATTACCAAAATACCCCTATAAGGGTATTTCGTAATTTGCCCTTCTGAGCTTGGAT
TTTATAAAACTTTTAATCTTAATTTCATAATATTTCATGATTTTTGGTGCATTTAAAATCATAGC
AGTACCTCAA
Found at i:9300951 original size:14 final size:14
Alignment explanation
Indices: 9300932--9300958 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9300922 TGGGAGAAAA
9300932 TTGCATTTATTTTC
1 TTGCATTTATTTTC
9300946 TTGCATTTATTTT
1 TTGCATTTATTTT
9300959 TCAAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.11, G:0.07, T:0.67
Consensus pattern (14 bp):
TTGCATTTATTTTC
Found at i:9301614 original size:45 final size:42
Alignment explanation
Indices: 9301534--9301616 Score: 114
Period size: 45 Copynumber: 1.9 Consensus size: 42
9301524 TAGATACTAA
*
9301534 ACTTGTAAATCTAGATTAATTTTCTTAGTTTAAGTTCATTCC
1 ACTTGTAAATCTAGATTAATTTTCTTAGTTCAAGTTCATTCC
9301576 ACTTGTAGAAGTCTAGATCTAATTTTCTTA-TTACAAGTTCA
1 ACTTGTA-AA-TCTAGAT-TAATTTTCTTAGTT-CAAGTTCA
9301617 ATAAATTCCA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
42 7 0.19
43 2 0.06
44 9 0.25
45 18 0.50
ACGTcount: A:0.30, C:0.14, G:0.11, T:0.45
Consensus pattern (42 bp):
ACTTGTAAATCTAGATTAATTTTCTTAGTTCAAGTTCATTCC
Found at i:9304414 original size:30 final size:30
Alignment explanation
Indices: 9304346--9304417 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
9304336 TGATTTATGT
*
9304346 TTATTTGAATTTGGTTTTATTTTATTTGCA
1 TTATTTGATTTTGGTTTTATTTTATTTGCA
* *
9304376 TAAATTGATTTTGGTTTTACTTGTT-TTT-CA
1 TTATTTGATTTTGGTTTTA-TT-TTATTTGCA
9304406 TTATTTGATTTT
1 TTATTTGATTTT
9304418 TGTCTTTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
30 28 0.80
31 5 0.14
32 2 0.06
ACGTcount: A:0.19, C:0.04, G:0.12, T:0.64
Consensus pattern (30 bp):
TTATTTGATTTTGGTTTTATTTTATTTGCA
Found at i:9306783 original size:19 final size:19
Alignment explanation
Indices: 9306759--9306807 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
9306749 GAGCTTAGAG
* *
9306759 AAAAAGGAAAAACCAA-AA
1 AAAAAAGAAAAACAAAGAA
9306777 AAAAAAG-AAAACAAAGAAA
1 AAAAAAGAAAAACAAAG-AA
9306796 AAAAAAGAAAAA
1 AAAAAAGAAAAA
9306808 AAATAATGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 7 0.27
18 6 0.23
19 9 0.35
20 4 0.15
ACGTcount: A:0.84, C:0.06, G:0.10, T:0.00
Consensus pattern (19 bp):
AAAAAAGAAAAACAAAGAA
Found at i:9306787 original size:9 final size:9
Alignment explanation
Indices: 9306775--9306810 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
9306765 GAAAAACCAA
9306775 AAAAAAAAG
1 AAAAAAAAG
*
9306784 AAAACAAAG
1 AAAAAAAAG
9306793 AAAAAAAAAG
1 -AAAAAAAAG
9306803 AAAAAAAA
1 AAAAAAAA
9306811 TAATGAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:9306808 original size:31 final size:31
Alignment explanation
Indices: 9306773--9306831 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
9306763 AGGAAAAACC
9306773 AAAAAAA-AAAGAAAACAAAGAAAAAAAAAGA
1 AAAAAAATAAAGAAAA-AAAGAAAAAAAAAGA
* *
9306804 AAAAAAATAATGAAAAAAAGAAGAAAAA
1 AAAAAAATAAAGAAAAAAAGAAAAAAAA
9306832 TAGTAAAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 18 0.72
32 7 0.28
ACGTcount: A:0.85, C:0.02, G:0.10, T:0.03
Consensus pattern (31 bp):
AAAAAAATAAAGAAAAAAAGAAAAAAAAAGA
Found at i:9306810 original size:23 final size:23
Alignment explanation
Indices: 9306773--9306831 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
9306763 AGGAAAAACC
*
9306773 AAAAAAA-AAAGAAAACAAAGAA
1 AAAAAAAGAAAAAAAACAAAGAA
* *
9306795 AAAAAAAGAAAAAAAATAATGAA
1 AAAAAAAGAAAAAAAACAAAGAA
9306818 AAAAAGAAGAAAAA
1 AAAAA-AAGAAAAA
9306832 TAGTAAAGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
22 7 0.22
23 17 0.53
24 8 0.25
ACGTcount: A:0.85, C:0.02, G:0.10, T:0.03
Consensus pattern (23 bp):
AAAAAAAGAAAAAAAACAAAGAA
Found at i:9306819 original size:19 final size:19
Alignment explanation
Indices: 9306774--9306831 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 19
9306764 GGAAAAACCA
*
9306774 AAAAAAAAAGAAAACAAAG
1 AAAAAAAAAGAAAAAAAAG
*
9306793 AAAAAAAAAGAAAAAAAAT
1 AAAAAAAAAGAAAAAAAAG
9306812 AATGAAAAAAAGAAGAAAAA
1 AA--AAAAAAAGAA-AAAAA
9306832 TAGTAAAGTG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 19 0.56
21 10 0.29
22 5 0.15
ACGTcount: A:0.84, C:0.02, G:0.10, T:0.03
Consensus pattern (19 bp):
AAAAAAAAAGAAAAAAAAG
Found at i:9306830 original size:9 final size:8
Alignment explanation
Indices: 9306776--9306831 Score: 53
Period size: 8 Copynumber: 6.9 Consensus size: 8
9306766 AAAAACCAAA
9306776 AAAAAAAG
1 AAAAAAAG
9306784 AAAACAAAG
1 AAAA-AAAG
9306793 AAAAAAA-
1 AAAAAAAG
9306800 AAGAAAAA-
1 AA-AAAAAG
* *
9306808 AAATAATG
1 AAAAAAAG
9306816 AAAAAAAG
1 AAAAAAAG
9306824 AAGAAAAA
1 AA-AAAAA
9306832 TAGTAAAGTG
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
7 5 0.12
8 22 0.55
9 13 0.32
ACGTcount: A:0.84, C:0.02, G:0.11, T:0.04
Consensus pattern (8 bp):
AAAAAAAG
Found at i:9312949 original size:3 final size:3
Alignment explanation
Indices: 9312941--9312977 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
9312931 TTACTTCATC
9312941 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
9312978 ATTCTGCATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:9314008 original size:17 final size:17
Alignment explanation
Indices: 9313979--9314012 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
9313969 TTCCATGGAC
9313979 AACCAAAAGAAAAAAAA
1 AACCAAAAGAAAAAAAA
9313996 AACCGAAAA-AAAAAAAA
1 AACC-AAAAGAAAAAAAA
9314013 CTCAGATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.82, C:0.12, G:0.06, T:0.00
Consensus pattern (17 bp):
AACCAAAAGAAAAAAAA
Found at i:9314966 original size:145 final size:145
Alignment explanation
Indices: 9314639--9315029 Score: 545
Period size: 145 Copynumber: 2.7 Consensus size: 145
9314629 TCATTTTTGA
* * * *
9314639 GATTTTAAAT-CACCAAAAAATTATGAAATATTATAAAATTAAGATCTAAAAAATTTCATGAAAA
1 GATTTCAAATGCACC-AAAAATCATGAAATATTATGAAATTAAGATCTAAAAAGTTTCATGAAAA
* * *
9314703 TCCGAGCTCAGAAAGGGCCAAATTACAAAAATACCCTTCTAGGGATATTTTGGTAATTTCACACT
65 TCTGAGCTC-GAAA-GGCCAAATTACAAAAATACCCTTATAGGGATATTTTAGTAATTTCACACT
*
9314768 ATCTCAGGGTACTATTGT
128 ATCTCAGGGTACTACTGT
* *
9314786 GATTTCAAATGCTCCAAAAATCATGAAATATTATGAAATTAAGATCTAAAATGTTTCATGAAAAT
1 GATTTCAAATGCACCAAAAATCATGAAATATTATGAAATTAAGATCTAAAAAGTTTCATGAAAAT
* * *
9314851 CTGAGCTCGGAAAGGCCAAGTTACAAAAATACCCTTATAGGGGTATTTTAGTAATTTCATACT-T
66 CTGAGCTC-GAAAGGCCAAATTACAAAAATACCCTTATAGGGATATTTTAGTAATTTCACACTAT
*
9314915 ATC-GAGGTACTACTGT
130 CTCAG-GGTACTACTGT
* *
9314931 GATTTCAAATGCACCAAAAATCATGAAATATTATGAAATTAAAATATAAAAAGTTTCATGAAAAT
1 GATTTCAAATGCACCAAAAATCATGAAATATTATGAAATTAAGATCTAAAAAGTTTCATGAAAAT
* *
9314996 TTGAGCTCGAGAAGGTCAAATTACAAAAATACCC
66 CTGAGCTCGA-AAGGCCAAATTACAAAAATACCC
9315030 CCTAAAGAGC
Statistics
Matches: 219, Mismatches: 22, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
144 3 0.01
145 102 0.47
146 45 0.21
147 66 0.30
148 3 0.01
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (145 bp):
GATTTCAAATGCACCAAAAATCATGAAATATTATGAAATTAAGATCTAAAAAGTTTCATGAAAAT
CTGAGCTCGAAAGGCCAAATTACAAAAATACCCTTATAGGGATATTTTAGTAATTTCACACTATC
TCAGGGTACTACTGT
Found at i:9316006 original size:50 final size:50
Alignment explanation
Indices: 9315921--9316115 Score: 268
Period size: 50 Copynumber: 3.9 Consensus size: 50
9315911 ATTTTACTTA
*
9315921 AAAATGACTCCCCCTAAACAAAAGCTTTGAAACTTTAAAAATCTTGTTTG
1 AAAATGGCTCCCCCTAAACAAAAGCTTTGAAACTTTAAAAATCTTGTTTG
* ** *
9315971 AAAATGGCTCCCCCTAAA-AAGAGACACTGACACTTTAAAAATCTTGCTTT-
1 AAAATGGCTCCCCCTAAACAAAAG-CTTTGAAACTTTAAAAATCTTG-TTTG
9316021 AAAATGGCTCCCCCTAAACAAAAGCTTTGAAACTTTAAAAATCTTGTTTG
1 AAAATGGCTCCCCCTAAACAAAAGCTTTGAAACTTTAAAAATCTTGTTTG
* * * * *
9316071 AAAATTGCTCCCCCTAAATAGAAGTTTTGAACCTTTAAAAATCTT
1 AAAATGGCTCCCCCTAAACAAAAGCTTTGAAACTTTAAAAATCTT
9316116 ATTTTTCTTT
Statistics
Matches: 127, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
49 7 0.06
50 113 0.89
51 7 0.06
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.30
Consensus pattern (50 bp):
AAAATGGCTCCCCCTAAACAAAAGCTTTGAAACTTTAAAAATCTTGTTTG
Found at i:9317635 original size:23 final size:22
Alignment explanation
Indices: 9317591--9317646 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
9317581 TCTTTTTGTG
9317591 TCTTTTTGTTTTCTTCTCTCCTT
1 TCTTTTT-TTTTCTTCTCTCCTT
*
9317614 CTCTTTTTTTTTCCTT-TTTCCTT
1 -TCTTTTTTTTT-CTTCTCTCCTT
*
9317637 TCTTTCTTTT
1 TCTTTTTTTT
9317647 CTCCATCTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 9 0.31
23 10 0.34
24 10 0.34
ACGTcount: A:0.00, C:0.25, G:0.02, T:0.73
Consensus pattern (22 bp):
TCTTTTTTTTTCTTCTCTCCTT
Found at i:9318252 original size:143 final size:144
Alignment explanation
Indices: 9317940--9318407 Score: 622
Period size: 144 Copynumber: 3.2 Consensus size: 144
9317930 TAAAAAACTT
* ** * *
9317940 ATGAAATATTATAAAATTAAGATCCAAAAAATTTCAAAAAAATCCAAGCTCAGGAAGGCCAAATT
1 ATGAAATATTATGAAATTAAGATCTGAAAAGTTTCATAAAAATCCAAGCTCAGGAAGGCCAAATT
* * * * *
9318005 ACGAAAATACCCTTACAGGGGTATTTTGATAATTTT-CACTTCTT-GGAGTACTGCTGTGATTTT
66 ACG-AAATACCCTTATAGGGGTATTTTGGTAATTTTACACTT-TTAGGGGTACTGCTATGATTTC
9318068 AAATGCACCAAAAATC
129 AAATGCACCAAAAATC
*
9318084 ATAAAATATTATGAAATTAAGATCTGAAAAGTTTCATAAAAATCCAAGCTCAGGAAGGCCAAATT
1 ATGAAATATTATGAAATTAAGATCTGAAAAGTTTCATAAAAATCCAAGCTCAGGAAGGCCAAATT
*
9318149 ACGAAATACCCTTATAGGGGTATTTTGGTAATTTTAGACTTTTAGGGGTACTGCTATGATTTCAA
66 ACGAAATACCCTTATAGGGGTATTTTGGTAATTTTACACTTTTAGGGGTACTGCTATGATTTCAA
*
9318214 ATACACC-AAAATC
131 ATGCACCAAAAATC
* **
9318227 ATGAAATATTATGAAATTAAGATCTGAAAAGTTTCATGAAAATCTGAGCTC-GAGAAGGCCAAAT
1 ATGAAATATTATGAAATTAAGATCTGAAAAGTTTCATAAAAATCCAAGCTCAG-GAAGGCCAAAT
* * * * * * * *
9318291 TACAAAAATAGCCTTATAGGGGTATTTTGGTGATTTCATACTTTCAAGGGTAGTGCTATGATTTC
65 TAC-GAAATACCCTTATAGGGGTATTTTGGTAATTTTACACTTTTAGGGGTACTGCTATGATTTC
*
9318356 AAATGCCCCAAAAATC
129 AAATGCACCAAAAATC
*
9318372 ATTAAATATTATGAAATTAAGATCTTG-AAAGTTTCA
1 ATGAAATATTATGAAATTAAGATC-TGAAAAGTTTCA
9318408 CAACAATCTA
Statistics
Matches: 290, Mismatches: 28, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
142 1 0.00
143 99 0.34
144 150 0.52
145 38 0.13
146 2 0.01
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.31
Consensus pattern (144 bp):
ATGAAATATTATGAAATTAAGATCTGAAAAGTTTCATAAAAATCCAAGCTCAGGAAGGCCAAATT
ACGAAATACCCTTATAGGGGTATTTTGGTAATTTTACACTTTTAGGGGTACTGCTATGATTTCAA
ATGCACCAAAAATC
Found at i:9321564 original size:33 final size:33
Alignment explanation
Indices: 9321520--9321587 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
9321510 TTAGATAGTA
* * *
9321520 AACTTGTAGATCTAGATTACTTATCCTCAATTT
1 AACTTGAAGATCTACATTACTCATCCTCAATTT
*
9321553 AACTTGAAGATCTACATTACTCATCCTCAGTTT
1 AACTTGAAGATCTACATTACTCATCCTCAATTT
9321586 AA
1 AA
9321588 ATTTATTCCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (33 bp):
AACTTGAAGATCTACATTACTCATCCTCAATTT
Found at i:9322430 original size:14 final size:15
Alignment explanation
Indices: 9322395--9322445 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 15
9322385 GTTTAGTTGA
* *
9322395 AGGTTTGTTCGGTTT
1 AGGTTGGTTCGATTT
9322410 AGGTTGGTTCGATTT
1 AGGTTGGTTCGATTT
*
9322425 -GGTTGGTTTGATTT
1 AGGTTGGTTCGATTT
*
9322439 GGGTTGG
1 AGGTTGG
9322446 GGTAAGATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
14 13 0.41
15 19 0.59
ACGTcount: A:0.08, C:0.04, G:0.39, T:0.49
Consensus pattern (15 bp):
AGGTTGGTTCGATTT
Found at i:9322559 original size:20 final size:20
Alignment explanation
Indices: 9322534--9322617 Score: 82
Period size: 20 Copynumber: 4.2 Consensus size: 20
9322524 TATTTGGTTT
* *
9322534 GGTTTTGGTTTAAGATTTGA
1 GGTTTTAGTTTAAGGTTTGA
*
9322554 GGTTTTTAGTTTAGGGTTT-A
1 GG-TTTTAGTTTAAGGTTTGA
*
9322574 GGGTTTTAGTTTAAGGTTTGG
1 -GGTTTTAGTTTAAGGTTTGA
* *
9322595 GGTTTTGGTTTAGGGTTTG-
1 GGTTTTAGTTTAAGGTTTGA
9322614 GGTT
1 GGTT
9322618 GGATAGTGCC
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
19 4 0.07
20 35 0.65
21 15 0.28
ACGTcount: A:0.13, C:0.00, G:0.36, T:0.51
Consensus pattern (20 bp):
GGTTTTAGTTTAAGGTTTGA
Found at i:9324945 original size:50 final size:50
Alignment explanation
Indices: 9324788--9325746 Score: 859
Period size: 50 Copynumber: 19.2 Consensus size: 50
9324778 GGAATCTTAA
* * * * * * *
9324788 CTTTGAAAAGATCCTCTACACAGAGTCTTTGAAACTTTAAAAAAGAATCTTAT
1 CTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAA-TTT-TAAAA-TATCTCAT
* * * * * *
9324841 CTTTGGAAAGGCTCTTCTTATACAGAAGATTTAAAACTTTAATAATATCTCAT
1 CTTTGGAAA-GCTCCTC-TAAACAGAGGCTTTGAAATTTTAA-AATATCTCAT
* *
9324894 CTTTGGAAAGCTCATCTAAATAGAGGCTTT-AAAGTTTTAAAATATCTCAT
1 CTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAA-TTTTAAAATATCTCAT
* ** * * *
9324944 CTTTGGAAAACTCCTCTAAGTAGAGGCTTTGAAATTTTACAATATATAAT
1 CTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAATTTTAAAATATCTCAT
* * * *
9324994 CTTTAGAAAAGCTCTTCTAAACAGAGGTTTTGAAACTTTAAAAATATCTCAT
1 CTTT-GGAAAGCTCCTCTAAACAGAGGCTTTGAAA-TTTTAAAATATCTCAT
* * * *
9325046 ATTTGGAAAGCTCCTCTAAATAGAGGCTTTAAAAATTTT-AAATGTCTCAT
1 CTTTGGAAAGCTCCTCTAAACAGAGGCTTT-GAAATTTTAAAATATCTCAT
* * * * * *
9325096 TTTTGGAAAGTTCCTCGAAATAGAGGCTTTGAAAATTTAAAATGTCTCAT
1 CTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAATTTTAAAATATCTCAT
* * * * *
9325146 CTTTAGAAAGTTCCTCTAAACAGAGGCTTTGAAACTTTATAATATCTAAT
1 CTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAATTTTAAAATATCTCAT
* * * * *
9325196 TTTTAGAAAAGCTCCTCTAAACAGAGGTTTTAAAACTTTAAAAATATCTCAT
1 CTTT-GGAAAGCTCCTCTAAACAGAGGCTTTGAAA-TTTTAAAATATCTCAT
* * *
9325248 TTTTGGAAAGCTCTTCTAAACAGAGGCTTTGAAATTTTAAAATGTCTCAT
1 CTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAATTTTAAAATATCTCAT
* * * *
9325298 TTTTGGAAAGTTCCTCTAAACAGAGGCTTTGAAAATTTAAAATGTCTCAT
1 CTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAATTTTAAAATATCTCAT
* * * * *
9325348 CTTTGGAAAGTTCCTCTAAACAGAGGCTTTCAAACTTTAAAATGTCTTAT
1 CTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAATTTTAAAATATCTCAT
* * *
9325398 CTTTGGAAAGTTCCTCTAAATAGAGGCTTTGAAACTTT--AA-A----AT
1 CTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAATTTTAAAATATCTCAT
* * *
9325441 CTTTGGAAAGCTCCTCTAAACAGGGGCTTTGAAACTTTAAAA-GTCTCAT
1 CTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAATTTTAAAATATCTCAT
* * * * * *
9325490 CTTTGGAAAGCTTCTATAAATAGAGACTTTGAAA-CTAAAAATATCTCAT
1 CTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAATTTTAAAATATCTCAT
* * * * * *
9325539 C-TTGGAAAGCTCATCAAAATAAAAGCTTTGAAACTTTAAAAATATCTCAT
1 CTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAA-TTTTAAAATATCTCAT
* * * * * *
9325589 CCTTGGAAAGCTCCTTTAAACAAAGGCTTTGGAACTTTAGAA-ATCTCAT
1 CTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAATTTTAAAATATCTCAT
*
9325638 CTTTGGAAAGCTCCTCTAAA-AGAGGCTTTGGAACTTTTAAAA-ATCTCAT
1 CTTTGGAAAGCTCCTCTAAACAGAGGCTTT-GAAATTTTAAAATATCTCAT
* * * * * * * * *
9325687 TTTTAGAAAGCTTCTCAAAATAAAGGTTTTGAAACTTTAAAAACATCTCAT
1 CTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAA-TTTTAAAATATCTCAT
9325738 CTTTGGAAA
1 CTTTGGAAA
9325747 AGCTGCTAGT
Statistics
Matches: 754, Mismatches: 127, Indels: 52
0.81 0.14 0.06
Matches are distributed among these distances:
43 37 0.05
45 2 0.00
48 40 0.05
49 103 0.14
50 327 0.43
51 158 0.21
52 40 0.05
53 25 0.03
54 9 0.01
55 13 0.02
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.35
Consensus pattern (50 bp):
CTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAATTTTAAAATATCTCAT
Found at i:9325041 original size:152 final size:150
Alignment explanation
Indices: 9324788--9325746 Score: 947
Period size: 152 Copynumber: 6.4 Consensus size: 150
9324778 GGAATCTTAA
* * * * * * * *
9324788 CTTTGAAAAGATCCTCTACACAGAGTCTTTGAAACTTTAAAAAAGAATCTTATCTTTGGAAAGGC
1 CTTTGGAAAGCTCCTCTAAATAGAGGCTTTGAAA-TTT-TAAAA-TATCTCATCTTTGGAAA-GC
* * * * * *
9324853 TCTTCTTATACAGAAGATTTAAAACTTTAATAATATCTCATCTTTGGAAAGCTCATCTAAATAGA
62 TCCTC-TAAACAGAGGCTTTGAAACTTTAA-AATATCTCATCTTTGGAAAGCTCCTCTAAATAGA
*
9324918 GGCTTTAAAGTTTTAAAATATCTCAT
125 GGCTTTAAAATTTTAAAATATCTCAT
* * * * * * *
9324944 CTTTGGAAAACTCCTCTAAGTAGAGGCTTTGAAATTTTACAATATATAATCTTTAGAAAAGCTCT
1 CTTTGGAAAGCTCCTCTAAATAGAGGCTTTGAAATTTTAAAATATCTCATCTTT-GGAAAGCTCC
* *
9325009 TCTAAACAGAGGTTTTGAAACTTTAAAAATATCTCATATTTGGAAAGCTCCTCTAAATAGAGGCT
65 TCTAAACAGAGGCTTTGAAACTTT-AAAATATCTCATCTTTGGAAAGCTCCTCTAAATAGAGGCT
*
9325074 TTAAAAATTTT-AAATGTCTCAT
129 TT-AAAATTTTAAAATATCTCAT
* * * * * * *
9325096 TTTTGGAAAGTTCCTCGAAATAGAGGCTTTGAAAATTTAAAATGTCTCATCTTTAGAAAGTTCCT
1 CTTTGGAAAGCTCCTCTAAATAGAGGCTTTGAAATTTTAAAATATCTCATCTTTGGAAAGCTCCT
* * * * * *
9325161 CTAAACAGAGGCTTTGAAACTTTATAATATCTAATTTTTAGAAAAGCTCCTCTAAACAGAGGTTT
66 CTAAACAGAGGCTTTGAAACTTTAAAATATCTCATCTTT-GGAAAGCTCCTCTAAATAGAGGCTT
*
9325226 TAAAACTTTAAAAATATCTCAT
130 TAAAA-TTTTAAAATATCTCAT
* * * * * *
9325248 TTTTGGAAAGCTCTTCTAAACAGAGGCTTTGAAATTTTAAAATGTCTCATTTTTGGAAAGTTCCT
1 CTTTGGAAAGCTCCTCTAAATAGAGGCTTTGAAATTTTAAAATATCTCATCTTTGGAAAGCTCCT
* * * *
9325313 CTAAACAGAGGCTTTGAAAATTTAAAATGTCTCATCTTTGGAAAGTTCCTCTAAACAGAGGCTTT
66 CTAAACAGAGGCTTTGAAACTTTAAAATATCTCATCTTTGGAAAGCTCCTCTAAATAGAGGCTTT
* * * *
9325378 CAAACTTTAAAATGTCTTAT
131 AAAATTTTAAAATATCTCAT
* *
9325398 CTTTGGAAAGTTCCTCTAAATAGAGGCTTTGAAACTTT--AA-A----ATCTTTGGAAAGCTCCT
1 CTTTGGAAAGCTCCTCTAAATAGAGGCTTTGAAATTTTAAAATATCTCATCTTTGGAAAGCTCCT
* * * * *
9325456 CTAAACAGGGGCTTTGAAACTTTAAAA-GTCTCATCTTTGGAAAGCTTCTATAAATAGAGACTTT
66 CTAAACAGAGGCTTTGAAACTTTAAAATATCTCATCTTTGGAAAGCTCCTCTAAATAGAGGCTTT
* * *
9325520 GAAA-CTAAAAATATCTCAT
131 AAAATTTTAAAATATCTCAT
* * * * * *
9325539 C-TTGGAAAGCTCATCAAAATAAAAGCTTTGAAACTTTAAAAATATCTCATCCTTGGAAAGCTCC
1 CTTTGGAAAGCTCCTCTAAATAGAGGCTTTGAAA-TTTTAAAATATCTCATCTTTGGAAAGCTCC
* * * *
9325603 TTTAAACAAAGGCTTTGGAACTTTAGAA-ATCTCATCTTTGGAAAGCTCCTCTAAA-AGAGGCTT
65 TCTAAACAGAGGCTTTGAAACTTTAAAATATCTCATCTTTGGAAAGCTCCTCTAAATAGAGGCTT
* *
9325666 TGGAACTTTTAAAA-ATCTCAT
130 T-AAAATTTTAAAATATCTCAT
* * * * * * * *
9325687 TTTTAGAAAGCTTCTCAAAATAAAGGTTTTGAAACTTTAAAAACATCTCATCTTTGGAAA
1 CTTTGGAAAGCTCCTCTAAATAGAGGCTTTGAAA-TTTTAAAATATCTCATCTTTGGAAA
9325747 AGCTGCTAGT
Statistics
Matches: 674, Mismatches: 112, Indels: 41
0.81 0.14 0.05
Matches are distributed among these distances:
140 27 0.04
141 14 0.02
142 35 0.05
143 42 0.06
144 1 0.00
147 8 0.01
148 74 0.11
149 56 0.08
150 62 0.09
151 81 0.12
152 212 0.31
153 25 0.04
154 7 0.01
155 3 0.00
156 27 0.04
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.35
Consensus pattern (150 bp):
CTTTGGAAAGCTCCTCTAAATAGAGGCTTTGAAATTTTAAAATATCTCATCTTTGGAAAGCTCCT
CTAAACAGAGGCTTTGAAACTTTAAAATATCTCATCTTTGGAAAGCTCCTCTAAATAGAGGCTTT
AAAATTTTAAAATATCTCAT
Found at i:9325241 original size:202 final size:199
Alignment explanation
Indices: 9324788--9325746 Score: 976
Period size: 202 Copynumber: 4.8 Consensus size: 199
9324778 GGAATCTTAA
* * *
9324788 CTTTGAAAAGATCCTCTACACAGA-GTCTTTGAAACTTTAAAAAAGAATCTTATCTTTGGAAAGG
1 CTTTGAAAAGCTCCTCTAAACAGAGGT-TTTGAAACTTT--AAAA-AATCTCATCTTTGGAAA-G
* * * * * * * * * *
9324852 CTCTTCTTATACAGAAGATTTAAAACTTTAATAATATCTCATCTTTGGAAAGCTCATCTAAATAG
61 CTCCTC-TAAACAGAGGCTTTGAAA-TTTTA-AATGTCTCATTTTTGGAAAGTTCCTCTAAATAG
* * ** *
9324917 AGGCTTT-AAAGTTTTAAAATATCTCATCTTTGGAAAACTCCTCTAAGTAGAGGCTTTGAAATTT
123 AGGCTTTGAAA-ATTTAAAATATCTCATCTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAACTT
* *
9324981 TACAATATATAAT
187 TAAAATATCTAAT
* *
9324994 CTTTAGAAAAGCTCTTCTAAACAGAGGTTTTGAAACTTTAAAAATATCTCATATTTGGAAAGCTC
1 CTTT-GAAAAGCTCCTCTAAACAGAGGTTTTGAAACTTTAAAAA-ATCTCATCTTTGGAAAGCTC
* * *
9325059 CTCTAAATAGAGGCTTTAAAAATTTTAAATGTCTCATTTTTGGAAAGTTCCTCGAAATAGAGGCT
64 CTCTAAACAGAGGCTTT-GAAATTTTAAATGTCTCATTTTTGGAAAGTTCCTCTAAATAGAGGCT
* * * *
9325124 TTGAAAATTTAAAATGTCTCATCTTTAGAAAGTTCCTCTAAACAGAGGCTTTGAAACTTTATAAT
128 TTGAAAATTTAAAATATCTCATCTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAACTTTAAAAT
9325189 ATCTAAT
193 ATCTAAT
* * *
9325196 TTTTAGAAAAGCTCCTCTAAACAGAGGTTTTAAAACTTTAAAAATATCTCATTTTTGGAAAGCTC
1 CTTT-GAAAAGCTCCTCTAAACAGAGGTTTTGAAACTTTAAAAA-ATCTCATCTTTGGAAAGCTC
* *
9325261 TTCTAAACAGAGGCTTTGAAATTTTAAAATGTCTCATTTTTGGAAAGTTCCTCTAAACAGAGGCT
64 CTCTAAACAGAGGCTTTGAAATTTT-AAATGTCTCATTTTTGGAAAGTTCCTCTAAATAGAGGCT
* * *
9325326 TTGAAAATTTAAAATGTCTCATCTTTGGAAAGTTCCTCTAAACAGAGGCTTTCAAACTTTAAAAT
128 TTGAAAATTTAAAATATCTCATCTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAACTTTAAAAT
* *
9325391 GTCTTAT
193 ATCTAAT
* * * *
9325398 CTTTGGAAAGTTCCTCTAAATAGAGGCTTTGAAACTTT---AAA----ATCTTTGGAAAGCTCCT
1 CTTTGAAAAGCTCCTCTAAACAGAGGTTTTGAAACTTTAAAAAATCTCATCTTTGGAAAGCTCCT
* * * * * *
9325456 CTAAACAGGGGCTTTGAAACTTTAAAAGTCTCATCTTTGGAAAGCTT-CTATAAATAGAGACTTT
66 CTAAACAGAGGCTTTGAAATTTTAAATGTCTCATTTTTGGAAAG-TTCCTCTAAATAGAGGCTTT
* * * * * * *
9325520 G-AAACTAAAAATATCTCATC-TTGGAAAGCTCATCAAAATAAAAGCTTTGAAACTTTAAAAATA
130 GAAAATTTAAAATATCTCATCTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAACTTT-AAAATA
*
9325583 TCTCAT
194 TCTAAT
* * * * * * *
9325589 CCTTGGAAAGCTCCTTTAAACAAAGGCTTTGGAACTTT-AGAAATCTCATCTTTGGAAAGCTCCT
1 CTTTGAAAAGCTCCTCTAAACAGAGGTTTTGAAACTTTAAAAAATCTCATCTTTGGAAAGCTCCT
* ** * * * *
9325653 CTAAA-AGAGGCTTTGGAACTTTTAAAAATCTCATTTTTAGAAAGCTT-CTCAAAATAAAGGTTT
66 CTAAACAGAGGCTTT-GAAATTTTAAATGTCTCATTTTTGGAAAG-TTCCTCTAAATAGAGGCTT
* *
9325716 TGAAACTTTAAAAACATCTCATCTTTGGAAA
129 TGAAAATTT-AAAATATCTCATCTTTGGAAA
9325747 AGCTGCTAGT
Statistics
Matches: 647, Mismatches: 88, Indels: 42
0.83 0.11 0.05
Matches are distributed among these distances:
190 29 0.04
191 58 0.09
192 34 0.05
193 41 0.06
196 8 0.01
197 63 0.10
198 5 0.01
199 12 0.02
200 7 0.01
201 36 0.06
202 274 0.42
203 17 0.03
204 11 0.02
205 18 0.03
206 4 0.01
207 28 0.04
208 2 0.00
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.35
Consensus pattern (199 bp):
CTTTGAAAAGCTCCTCTAAACAGAGGTTTTGAAACTTTAAAAAATCTCATCTTTGGAAAGCTCCT
CTAAACAGAGGCTTTGAAATTTTAAATGTCTCATTTTTGGAAAGTTCCTCTAAATAGAGGCTTTG
AAAATTTAAAATATCTCATCTTTGGAAAGCTCCTCTAAACAGAGGCTTTGAAACTTTAAAATATC
TAAT
Found at i:9326896 original size:22 final size:21
Alignment explanation
Indices: 9326871--9326916 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
9326861 TAGATCCTTC
*
9326871 TTTTTTTTCTTTTTTTAATTAA
1 TTTTTTATCTTTTTTT-ATTAA
*
9326893 TTTTTTATGTTTTTTTATTAA
1 TTTTTTATCTTTTTTTATTAA
9326914 TTT
1 TTT
9326917 ATTTGATTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.78
Consensus pattern (21 bp):
TTTTTTATCTTTTTTTATTAA
Found at i:9329243 original size:17 final size:17
Alignment explanation
Indices: 9329221--9329254 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9329211 TGTATAAATC
*
9329221 GAAAGCCAAACTATCCA
1 GAAAGCCAAACCATCCA
9329238 GAAAGCCAAACCATCCA
1 GAAAGCCAAACCATCCA
9329255 ACATCACTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.32, G:0.12, T:0.09
Consensus pattern (17 bp):
GAAAGCCAAACCATCCA
Found at i:9331014 original size:15 final size:16
Alignment explanation
Indices: 9330987--9331018 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
9330977 TTTTTCTTTA
9330987 TAGCCACTTTTGGCTT
1 TAGCCACTTTTGGCTT
9331003 TAGCCA-TTTTGGCTT
1 TAGCCACTTTTGGCTT
9331018 T
1 T
9331019 TATTTTTACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.12, C:0.22, G:0.19, T:0.47
Consensus pattern (16 bp):
TAGCCACTTTTGGCTT
Found at i:9331020 original size:16 final size:17
Alignment explanation
Indices: 9330982--9331020 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
9330972 TGGGATTTTT
9330982 CTTTATAGCCACTTTTGG
1 CTTT-TAGCCACTTTTGG
9331000 C-TTTAGCCA-TTTTGG
1 CTTTTAGCCACTTTTGG
9331015 CTTTTA
1 CTTTTA
9331021 TTTTTACTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 7 0.35
16 10 0.50
17 2 0.10
18 1 0.05
ACGTcount: A:0.15, C:0.21, G:0.15, T:0.49
Consensus pattern (17 bp):
CTTTTAGCCACTTTTGG
Found at i:9336217 original size:24 final size:24
Alignment explanation
Indices: 9336190--9336242 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
9336180 ATCGAAATTG
9336190 AATCATGACTCAAAGAACAAATAT
1 AATCATGACTCAAAGAACAAATAT
*
9336214 AATCATGACTCGAAGAACAAATAT
1 AATCATGACTCAAAGAACAAATAT
*
9336238 GATCA
1 AATCA
9336243 AAACTAGGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.51, C:0.17, G:0.11, T:0.21
Consensus pattern (24 bp):
AATCATGACTCAAAGAACAAATAT
Found at i:9336670 original size:70 final size:69
Alignment explanation
Indices: 9336575--9336712 Score: 197
Period size: 70 Copynumber: 2.0 Consensus size: 69
9336565 TGACCATGAT
* *
9336575 TGAGCCATAAGTTGAAAAATAAAAATGA-CAAGAATTGAACTACGAATCAAATAATAAGTATGAT
1 TGAGCCACAAGTTGAAAAATAAAAATGACCAAG-ATTGAACTA-GAATCAAAGAATAAGTATGAT
*
9336639 TAGAAG
64 CAGAAG
* * *
9336645 TGAGCCACAAGTTGAGAAATGAAAATGACCAAGATTGAACTAGAGTCAAAGAATAAGTATGATCA
1 TGAGCCACAAGTTGAAAAATAAAAATGACCAAGATTGAACTAGAATCAAAGAATAAGTATGATCA
9336710 GAA
66 GAA
9336713 CTAAGTTGCA
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
69 23 0.38
70 34 0.56
71 4 0.07
ACGTcount: A:0.49, C:0.10, G:0.20, T:0.21
Consensus pattern (69 bp):
TGAGCCACAAGTTGAAAAATAAAAATGACCAAGATTGAACTAGAATCAAAGAATAAGTATGATCA
GAAG
Found at i:9336731 original size:69 final size:70
Alignment explanation
Indices: 9336577--9336737 Score: 182
Period size: 69 Copynumber: 2.3 Consensus size: 70
9336567 ACCATGATTG
* * * * * *
9336577 AGCCATAAGTTGAAAAATAAAAATGACAAGAATTGAACTACGAATCAAATAATAAGTATGATTAG
1 AGCCACAAGTCGAGAAATGAAAATGACAAGAATTGAACTACGAATCAAAGAATAAGTATGATCAG
* *
9336642 AAGTG
66 AACTA
* *
9336647 AGCCACAAGTTGAGAAATGAAAATGACCAAG-ATTGAACTA-GAGTCAAAGAATAAGTATGATCA
1 AGCCACAAGTCGAGAAATGAAAATGA-CAAGAATTGAACTACGAATCAAAGAATAAGTATGATCA
9336710 GAACTA
65 GAACTA
***
9336716 AGTTGCAAGTCGAGAAATGAAA
1 AGCCACAAGTCGAGAAATGAAA
9336738 GCGACCGAGA
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
69 42 0.54
70 32 0.41
71 4 0.05
ACGTcount: A:0.49, C:0.11, G:0.20, T:0.20
Consensus pattern (70 bp):
AGCCACAAGTCGAGAAATGAAAATGACAAGAATTGAACTACGAATCAAAGAATAAGTATGATCAG
AACTA
Found at i:9336792 original size:69 final size:68
Alignment explanation
Indices: 9336719--9336908 Score: 204
Period size: 69 Copynumber: 2.8 Consensus size: 68
9336709 AGAACTAAGT
***
9336719 TGCAAGTCGAGAAATGAAAGCGACCGAGACTAAATTGCAAGTCAAAAATAAATATGACCAAGATT
1 TGCAAGTCGAGAAATGAAAGCGACCGAGACTAAACCACAAGTCAAAAATAAATATGACCAAGATT
9336784 GAG
66 GAG
* ** * * * *
9336787 CTGCAACTAAAGAAATGAAAGTGATCGAGACTGAACCACAAGTTAAAAATAAATATGACCAAGAT
1 -TGCAAGTCGAGAAATGAAAGCGACCGAGACTAAACCACAAGTCAAAAATAAATATGACCAAGAT
9336852 TGAG
65 TGAG
* ** *
9336856 TCACAAGTCGA-AAATGAAAATGATC-AGAACTAAACCACAAGTCAAAGAATAAA
1 T-GCAAGTCGAGAAATGAAAGCGACCGAG-ACTAAACCACAAGTCAAA-AATAAA
9336909 GATAATCAGG
Statistics
Matches: 101, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
67 2 0.02
68 30 0.30
69 69 0.68
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.17
Consensus pattern (68 bp):
TGCAAGTCGAGAAATGAAAGCGACCGAGACTAAACCACAAGTCAAAAATAAATATGACCAAGATT
GAG
Found at i:9338264 original size:19 final size:18
Alignment explanation
Indices: 9338236--9338300 Score: 78
Period size: 19 Copynumber: 3.6 Consensus size: 18
9338226 GAATTGTATC
*
9338236 CTTTTATTTTATTTTTCT
1 CTTTTCTTTTATTTTTCT
*
9338254 CTTTTTCTTTTTTTTTTCT
1 C-TTTTCTTTTATTTTTCT
*
9338273 CTTTT-TTTTATTTTTTT
1 CTTTTCTTTTATTTTTCT
9338290 CCTTTTCTTTT
1 -CTTTTCTTTT
9338301 TAAGCAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
17 10 0.25
18 10 0.25
19 20 0.50
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.82
Consensus pattern (18 bp):
CTTTTCTTTTATTTTTCT
Found at i:9338269 original size:11 final size:11
Alignment explanation
Indices: 9338255--9338289 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
9338245 TATTTTTCTC
9338255 TTTTTCTTTTT
1 TTTTTCTTTTT
*
9338266 TTTTTCTCTTT
1 TTTTTCTTTTT
*
9338277 TTTTTATTTTT
1 TTTTTCTTTTT
9338288 TT
1 TT
9338290 CCTTTTCTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.89
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:9338279 original size:13 final size:12
Alignment explanation
Indices: 9338255--9338301 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 12
9338245 TATTTTTCTC
9338255 TTTTTCTTTTTT
1 TTTTTCTTTTTT
9338267 TTTTCTCTTTTTT
1 TTTT-TCTTTTTT
* *
9338280 TTATT-TTTTTC
1 TTTTTCTTTTTT
*
9338291 CTTTTCTTTTT
1 TTTTTCTTTTT
9338302 AAGCAAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 8 0.28
12 10 0.34
13 11 0.38
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTCTTTTTT
Found at i:9346502 original size:17 final size:17
Alignment explanation
Indices: 9346480--9346513 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9346470 TCTAACATAG
* *
9346480 CCATTTTTTTTCTTTCT
1 CCATTTTCTTCCTTTCT
9346497 CCATTTTCTTCCTTTCT
1 CCATTTTCTTCCTTTCT
9346514 ACCTCAAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.29, G:0.00, T:0.65
Consensus pattern (17 bp):
CCATTTTCTTCCTTTCT
Found at i:9348998 original size:134 final size:132
Alignment explanation
Indices: 9348797--9349054 Score: 444
Period size: 134 Copynumber: 1.9 Consensus size: 132
9348787 TTTTCTAATA
* ** *
9348797 AACATGAGCTTAAACTAAGCTAAAGCAAATCAAAAACAAGTTTACTACTGATTTTAACAAAAAAT
1 AACATGAGCTTAAACTAAACTAAAGCAAATCAAAAACAAGTTTACTACAAATTTCAACAAAAAAT
*
9348862 TTGTAGCAAAATAAAGGGAAAATAGCTCAACCAGCTAACAGACTAAACAACACTCAAAAAAGCAA
66 TTGTAGCAAAATAAAGGAAAAATAGCTCAACCAGCTAACAGACTAAACAACACTCAAAAAAGCAA
9348927 TG
131 TG
*
9348929 AACATGAGCTTAAACTAAACTAAAGCAAGATCAAACAACAAGTTTACTACAAATTTCAACAAAAC
1 AACATGAGCTTAAACTAAACTAAAGCAA-ATCAAA-AACAAGTTTACTACAAATTTCAACAAAAA
9348994 ATTTGTAGCAAAATAAAGGAAAAATAGCTCAACCAGCTAACAGACTAAACAACACTCAAAA
64 ATTTGTAGCAAAATAAAGGAAAAATAGCTCAACCAGCTAACAGACTAAACAACACTCAAAA
9349055 TCACAAAAAA
Statistics
Matches: 118, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
132 27 0.23
133 6 0.05
134 85 0.72
ACGTcount: A:0.52, C:0.19, G:0.11, T:0.19
Consensus pattern (132 bp):
AACATGAGCTTAAACTAAACTAAAGCAAATCAAAAACAAGTTTACTACAAATTTCAACAAAAAAT
TTGTAGCAAAATAAAGGAAAAATAGCTCAACCAGCTAACAGACTAAACAACACTCAAAAAAGCAA
TG
Found at i:9352259 original size:28 final size:26
Alignment explanation
Indices: 9352228--9352294 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
9352218 TTTTTCTTTC
*
9352228 TTTTATTCTTTTCTTTACTTTTTCACCA
1 TTTTATTCTTTTCCTT--TTTTTCACCA
* *
9352256 TTTTATTTTTTTTCCTTTTTTTCACTA
1 TTTTA-TTCTTTTCCTTTTTTTCACCA
*
9352283 TTTTTTTCTTTT
1 TTTTATTCTTTT
9352295 GTTTTTGCCA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
26 6 0.18
27 13 0.39
28 5 0.15
29 9 0.27
ACGTcount: A:0.10, C:0.16, G:0.00, T:0.73
Consensus pattern (26 bp):
TTTTATTCTTTTCCTTTTTTTCACCA
Found at i:9360032 original size:18 final size:18
Alignment explanation
Indices: 9360009--9360050 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
9359999 GGGTGACAAT
*
9360009 TTTAGG-TTACGTGTTGAA
1 TTTAGGATT-CGTGTTAAA
*
9360027 TTTAGGATTTGTGTTAAA
1 TTTAGGATTCGTGTTAAA
9360045 TTTAGG
1 TTTAGG
9360051 GTCTTGATGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 19 0.90
19 2 0.10
ACGTcount: A:0.24, C:0.02, G:0.26, T:0.48
Consensus pattern (18 bp):
TTTAGGATTCGTGTTAAA
Found at i:9360111 original size:13 final size:13
Alignment explanation
Indices: 9360093--9360117 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9360083 TTTGAGGTTT
9360093 TTTAGGATTTTGC
1 TTTAGGATTTTGC
9360106 TTTAGGATTTTG
1 TTTAGGATTTTG
9360118 AGGTTTTGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.24, T:0.56
Consensus pattern (13 bp):
TTTAGGATTTTGC
Found at i:9360209 original size:16 final size:16
Alignment explanation
Indices: 9360174--9360279 Score: 51
Period size: 15 Copynumber: 6.8 Consensus size: 16
9360164 GGTTTTGGAT
**
9360174 TTTAGGGTTTTGAAAC
1 TTTAGGGTTTTGAAGG
*
9360190 TTTAGGGTTTTGAGGG
1 TTTAGGGTTTTGAAGG
* *
9360206 TTTATGATTTT-AAGG
1 TTTAGGGTTTTGAAGG
* *
9360221 TTTCA-AGTTTT-AGGG
1 TTT-AGGGTTTTGAAGG
* *
9360236 TTTAGAGTTTTGAA-A
1 TTTAGGGTTTTGAAGG
* * *
9360251 TTTATGGTTTGGAA-A
1 TTTAGGGTTTTGAAGG
9360266 TATTAGGGTTTTGA
1 T-TTAGGGTTTTGA
9360280 GTTTTTGAGT
Statistics
Matches: 70, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
14 1 0.01
15 35 0.50
16 34 0.49
ACGTcount: A:0.24, C:0.02, G:0.27, T:0.47
Consensus pattern (16 bp):
TTTAGGGTTTTGAAGG
Found at i:9360244 original size:15 final size:15
Alignment explanation
Indices: 9360190--9360246 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
9360180 GTTTTGAAAC
*
9360190 TTTAGGGTTTTGAGGG
1 TTTAGAGTTTT-AGGG
*
9360206 TTTATGA-TTTTAAGG
1 TTTA-GAGTTTTAGGG
9360221 TTTCA-AGTTTTAGGG
1 TTT-AGAGTTTTAGGG
9360236 TTTAGAGTTTT
1 TTTAGAGTTTT
9360247 GAAATTTATG
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
14 2 0.06
15 22 0.65
16 9 0.26
17 1 0.03
ACGTcount: A:0.19, C:0.02, G:0.28, T:0.51
Consensus pattern (15 bp):
TTTAGAGTTTTAGGG
Found at i:9360298 original size:38 final size:36
Alignment explanation
Indices: 9360165--9360298 Score: 108
Period size: 38 Copynumber: 3.5 Consensus size: 36
9360155 AAGGCTCAAG
*
9360165 GTTTTGGATTTTAGGGTTTTGAAACTTTAGGGTTTTGA
1 GTTTTTGATTTTAGGG-TTTGAAA-TTTAGGGTTTTGA
* * * * *
9360203 GGGTTTATGATTTTAAGGTTTCAAGTTTTAGGGTTTAGA
1 --GTTTTTGATTTTAGGGTTTGAA-ATTTAGGGTTTTGA
* *
9360242 G-TTTTGAAATTTATGGTTTGGAAATATTAGGGTTTTGA
1 GTTTTTG-ATTTTAGGGTTT-GAAAT-TTAGGGTTTTGA
*
9360280 GTTTTTGAGTTTAGGGTTT
1 GTTTTTGATTTTAGGGTTT
9360299 TGGGGTTTCC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
36 4 0.05
37 12 0.16
38 24 0.32
39 22 0.29
40 13 0.17
ACGTcount: A:0.21, C:0.01, G:0.28, T:0.49
Consensus pattern (36 bp):
GTTTTTGATTTTAGGGTTTGAAATTTAGGGTTTTGA
Found at i:9360738 original size:3 final size:3
Alignment explanation
Indices: 9360723--9360773 Score: 54
Period size: 3 Copynumber: 17.3 Consensus size: 3
9360713 ATTTTCATTT
*
9360723 TTA TTA TTG TTA TTA TTA TTA TCTA GTTA TTA TTA TTA TT- TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA -TTA TTA TTA TTA TTA TTA TTA
9360768 TT- TTA T
1 TTA TTA T
9360774 AAGGTTTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
2 6 0.14
3 31 0.74
4 4 0.10
5 1 0.02
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:9360753 original size:17 final size:15
Alignment explanation
Indices: 9360723--9360773 Score: 63
Period size: 17 Copynumber: 3.5 Consensus size: 15
9360713 ATTTTCATTT
9360723 TTATTATTGTTATTA
1 TTATTATTGTTATTA
9360738 TTATTATCTAGTTATTA
1 TTATTAT-T-GTTATTA
9360755 TTATTATT-TT-TTA
1 TTATTATTGTTATTA
9360768 TT-TTAT
1 TTATTAT
9360774 AAGGTTTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
12 4 0.12
13 5 0.15
14 2 0.06
15 7 0.21
16 2 0.06
17 14 0.41
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (15 bp):
TTATTATTGTTATTA
Found at i:9361621 original size:36 final size:36
Alignment explanation
Indices: 9361554--9361622 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
9361544 TTGGCTTTTT
** *
9361554 TTTTTTTTTTTTATGAGTTTAGTTGTGGTTTTTGGG
1 TTTTTTTTTTTTAAAAGTTTAGTTGTAGTTTTTGGG
*
9361590 TTTTTTTTTTTTACAAAGTTTTGTT-TAGTTTTT
1 TTTTTTTTTTTTA-AAAGTTTAGTTGTAGTTTTT
9361623 TTTTATGGGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
36 20 0.71
37 8 0.29
ACGTcount: A:0.12, C:0.01, G:0.17, T:0.70
Consensus pattern (36 bp):
TTTTTTTTTTTTAAAAGTTTAGTTGTAGTTTTTGGG
Found at i:9373970 original size:10 final size:10
Alignment explanation
Indices: 9373955--9374002 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
9373945 CCTAGTGTGT
*
9373955 TATATATCTA
1 TATATATGTA
*
9373965 TATATATATA
1 TATATATGTA
9373975 TATATATGTA
1 TATATATGTA
*
9373985 TGTATATGTA
1 TATATATGTA
*
9373995 TGTATATG
1 TATATATG
9374003 AGAAGAGATC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 35 1.00
ACGTcount: A:0.38, C:0.02, G:0.10, T:0.50
Consensus pattern (10 bp):
TATATATGTA
Found at i:9374434 original size:2 final size:2
Alignment explanation
Indices: 9374427--9374456 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
9374417 TAAGTTGATC
9374427 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
9374457 ATATATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:9374461 original size:2 final size:2
Alignment explanation
Indices: 9374456--9374481 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
9374446 TCTCTCTCTC
9374456 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
9374482 AGTTAAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9376137 original size:4 final size:5
Alignment explanation
Indices: 9376111--9376158 Score: 62
Period size: 5 Copynumber: 9.8 Consensus size: 5
9376101 TCAAATCTAG
* **
9376111 ATTTT ATTTT ATTTT ATTTT A-TTT ATTTT GTTTT ATTAA ATTTT ATTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTT
9376159 CCCCAATATT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
4 4 0.11
5 32 0.89
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (5 bp):
ATTTT
Found at i:9376138 original size:24 final size:24
Alignment explanation
Indices: 9376111--9376158 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
9376101 TCAAATCTAG
**
9376111 ATTTTATTTTATTTTATTTTATTT
1 ATTTTATTTTATTAAATTTTATTT
*
9376135 ATTTTGTTTTATTAAATTTTATTT
1 ATTTTATTTTATTAAATTTTATTT
9376159 CCCCAATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (24 bp):
ATTTTATTTTATTAAATTTTATTT
Found at i:9376153 original size:19 final size:20
Alignment explanation
Indices: 9376111--9376158 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
9376101 TCAAATCTAG
**
9376111 ATTTTATTTTATTTTATTTT
1 ATTTTATTTTATTTTATTAA
*
9376131 A-TTTATTTTGTTTTATTAA
1 ATTTTATTTTATTTTATTAA
9376150 ATTTTATTT
1 ATTTTATTT
9376159 CCCCAATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (20 bp):
ATTTTATTTTATTTTATTAA
Found at i:9377358 original size:16 final size:16
Alignment explanation
Indices: 9377339--9377372 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9377329 TTAGATCGTC
9377339 TTGGATTCAGATAATT
1 TTGGATTCAGATAATT
* *
9377355 TTGGATTTAGATGATT
1 TTGGATTCAGATAATT
9377371 TT
1 TT
9377373 TTAGATAAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.26, C:0.03, G:0.21, T:0.50
Consensus pattern (16 bp):
TTGGATTCAGATAATT
Found at i:9377410 original size:17 final size:18
Alignment explanation
Indices: 9377371--9377409 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
9377361 TTAGATGATT
9377371 TTTTAGATAAGAAAAATA
1 TTTTAGATAAGAAAAATA
*
9377389 TTTTAGTTAAGAAAAATA
1 TTTTAGATAAGAAAAATA
9377407 TTT
1 TTT
9377410 ATTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (18 bp):
TTTTAGATAAGAAAAATA
Found at i:9378748 original size:2 final size:2
Alignment explanation
Indices: 9378741--9378767 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9378731 TGTAGATTAA
9378741 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
9378768 AATTGAGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9383044 original size:39 final size:40
Alignment explanation
Indices: 9382951--9383046 Score: 115
Period size: 42 Copynumber: 2.4 Consensus size: 40
9382941 TATTAAACTC
*
9382951 ATTTTATTTTTATTATAATTAATAAAATTACCATCTTATTTT
1 ATTTT-TTTTTATTATAATTAACAAAA-TACCATCTTATTTT
* *
9382993 ATTTATTTTTTATTATAATTAACAAAA-A-TATTTTATTTT
1 ATTT-TTTTTTATTATAATTAACAAAATACCATCTTATTTT
9383032 ATTTTTTATTTATTA
1 ATTTTTT-TTTATTA
9383047 AAAATACAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
38 3 0.06
39 20 0.41
40 1 0.02
42 24 0.49
43 1 0.02
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.60
Consensus pattern (40 bp):
ATTTTTTTTTATTATAATTAACAAAATACCATCTTATTTT
Found at i:9383052 original size:30 final size:32
Alignment explanation
Indices: 9382987--9383050 Score: 87
Period size: 35 Copynumber: 2.0 Consensus size: 32
9382977 ATTACCATCT
9382987 TATTTTATTTATTTTTTATTATAATTAACAAAAA
1 TATTTTATTTATTTTTTATTATAATT-A-AAAAA
9383021 TATTTTATTTTATTTTTTATT-T-ATTAAAAA
1 TATTTTA-TTTATTTTTTATTATAATTAAAAA
9383051 TACAAAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
31 4 0.14
32 1 0.03
33 3 0.10
34 8 0.28
35 13 0.45
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (32 bp):
TATTTTATTTATTTTTTATTATAATTAAAAAA
Found at i:9384347 original size:6 final size:6
Alignment explanation
Indices: 9384323--9384358 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
9384313 AATCAGGGCA
9384323 TTTTTC TTTTT- TTTCTTC TTTTTC TTTTTC TTTTTC
1 TTTTTC TTTTTC TTT-TTC TTTTTC TTTTTC TTTTTC
9384359 GTTATGTGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 3 0.11
6 22 0.79
7 3 0.11
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTC
Found at i:9386069 original size:17 final size:17
Alignment explanation
Indices: 9386047--9386094 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
9386037 TGATTTCTAG
9386047 AGAGAAAAAGAAAGAAA
1 AGAGAAAAAGAAAGAAA
* *
9386064 AGAGAAAAGGAAAAGAGA
1 AGAGAAAAAG-AAAGAAA
9386082 AG-GAAAAGAGAAA
1 AGAGAAAA-AGAAA
9386095 TTTGAAGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 17 0.65
18 9 0.35
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (17 bp):
AGAGAAAAAGAAAGAAA
Found at i:9386078 original size:13 final size:13
Alignment explanation
Indices: 9386060--9386094 Score: 56
Period size: 11 Copynumber: 2.8 Consensus size: 13
9386050 GAAAAAGAAA
9386060 GAAAAGAGAAAAG
1 GAAAAGAGAAAAG
9386073 GAAAAGAG--AAG
1 GAAAAGAGAAAAG
9386084 GAAAAGAGAAA
1 GAAAAGAGAAA
9386095 TTTGAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 11 0.55
13 9 0.45
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (13 bp):
GAAAAGAGAAAAG
Found at i:9386084 original size:11 final size:11
Alignment explanation
Indices: 9386050--9386093 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
9386040 TTTCTAGAGA
*
9386050 GAAAA-AGAAA
1 GAAAAGAGAAG
9386060 GAAAAGAGAAAAG
1 GAAAAGAG--AAG
9386073 GAAAAGAGAAG
1 GAAAAGAGAAG
9386084 GAAAAGAGAA
1 GAAAAGAGAA
9386094 ATTTGAAGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
10 5 0.17
11 15 0.50
13 10 0.33
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (11 bp):
GAAAAGAGAAG
Found at i:9386087 original size:24 final size:23
Alignment explanation
Indices: 9386050--9386094 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
9386040 TTTCTAGAGA
9386050 GAAAAAGAAAGAAAAGAGAAAAG
1 GAAAAAGAAAGAAAAGAGAAAAG
*
9386073 GAAAAGAGAAGGAAAAGAGAAA
1 GAAAA-AGAAAGAAAAGAGAAA
9386095 TTTGAAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (23 bp):
GAAAAAGAAAGAAAAGAGAAAAG
Found at i:9391122 original size:13 final size:13
Alignment explanation
Indices: 9391106--9391182 Score: 50
Period size: 13 Copynumber: 5.7 Consensus size: 13
9391096 AATGGATAAA
9391106 AAAATAAAAAATG
1 AAAATAAAAAATG
* *
9391119 AAAAGAAAAAGTG
1 AAAATAAAAAATG
*
9391132 AAAA-AAAAAAGAG
1 AAAATAAAAAA-TG
**
9391145 AAAATGAAAAGAAAA
1 AAAAT-AAAA-AATG
9391160 AAAAGTGAAAAAATG
1 AAAA-T-AAAAAATG
9391175 AAAA-AAAA
1 AAAATAAAA
9391183 GAGAAAAGAA
Statistics
Matches: 52, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
12 9 0.17
13 20 0.38
15 15 0.29
16 8 0.15
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (13 bp):
AAAATAAAAAATG
Found at i:9391127 original size:19 final size:18
Alignment explanation
Indices: 9391103--9391182 Score: 69
Period size: 19 Copynumber: 4.3 Consensus size: 18
9391093 AACAATGGAT
9391103 AAAAAAAT-AAAAAATGAA
1 AAAAAAATGAAAAAA-GAA
9391121 AAGAAAAAGTGAAAAAA-AA
1 AA-AAAAA-TGAAAAAAGAA
9391140 AAGAGAAAATG--AAAAGAA
1 AA-A-AAAATGAAAAAAGAA
*
9391158 AAAAAAGTGAAAAAATGAA
1 AAAAAAATGAAAAAA-GAA
9391177 AAAAAA
1 AAAAAA
9391183 GAGAAAAGAA
Statistics
Matches: 53, Mismatches: 1, Indels: 15
0.77 0.01 0.22
Matches are distributed among these distances:
16 5 0.09
17 5 0.09
18 10 0.19
19 22 0.42
20 5 0.09
21 6 0.11
ACGTcount: A:0.79, C:0.00, G:0.14, T:0.07
Consensus pattern (18 bp):
AAAAAAATGAAAAAAGAA
Found at i:9391158 original size:24 final size:24
Alignment explanation
Indices: 9391131--9391193 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
9391121 AAGAAAAAGT
*
9391131 GAAAAAAAAAAGAGAAAATGAAAA
1 GAAAAAAAAAAGAAAAAATGAAAA
**
9391155 GAAAAAAAAGTGAAAAAATGAAAA
1 GAAAAAAAAAAGAAAAAATGAAAA
*
9391179 -AAAAGAGAAAAGAAA
1 GAAAA-AAAAAAGAAA
9391194 GACTCAAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
23 4 0.12
24 28 0.88
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (24 bp):
GAAAAAAAAAAGAAAAAATGAAAA
Found at i:9391195 original size:11 final size:10
Alignment explanation
Indices: 9391135--9391195 Score: 54
Period size: 10 Copynumber: 5.9 Consensus size: 10
9391125 AAAAGTGAAA
9391135 AAAAAAAGAG
1 AAAAAAAGAG
9391145 AAAATGAAA-AG
1 AAAA--AAAGAG
*
9391156 AAAAAAAAGTG
1 -AAAAAAAGAG
*
9391167 AAAAAATGA-
1 AAAAAAAGAG
9391176 AAAAAAAGAG
1 AAAAAAAGAG
9391186 AAAAGAAAGA
1 AAAA-AAAGA
9391196 CTCAAATTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
9 8 0.20
10 18 0.44
11 8 0.20
12 7 0.17
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (10 bp):
AAAAAAAGAG
Found at i:9392229 original size:22 final size:22
Alignment explanation
Indices: 9392165--9392231 Score: 91
Period size: 22 Copynumber: 3.1 Consensus size: 22
9392155 TAAAATTATG
* *
9392165 AGTTTTCAAATGATAATCTTTG
1 AGTTTTCAAATGAAAATCTTTA
**
9392187 AG-TTTCAAATGGGAATCTTTA
1 AGTTTTCAAATGAAAATCTTTA
9392208 AGTTTTCAAATGAAAATCTTTA
1 AGTTTTCAAATGAAAATCTTTA
9392230 AG
1 AG
9392232 AAGTTTTAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
21 18 0.46
22 21 0.54
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.40
Consensus pattern (22 bp):
AGTTTTCAAATGAAAATCTTTA
Found at i:9392387 original size:44 final size:45
Alignment explanation
Indices: 9392302--9392411 Score: 127
Period size: 44 Copynumber: 2.5 Consensus size: 45
9392292 TCTTTAAACA
* * *
9392302 CGAATGACAAGCTTTGAACTCTTAGATGTGAACCTTTAAATTT-T
1 CGAATGAGAATCTTTGAACTCTTAGATGTGAACCTTAAAATTTAT
* *
9392346 TGAATGAGAATCTTTGAA-TTTTAGATGTGAGA-CTCTAAAATTTAT
1 CGAATGAGAATCTTTGAACTCTTAGATGTGA-ACCT-TAAAATTTAT
*
9392391 CGAATGTGAATCTTTGAACTC
1 CGAATGAGAATCTTTGAACTC
9392412 AAATAAGAAG
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
43 13 0.24
44 23 0.43
45 17 0.31
46 1 0.02
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (45 bp):
CGAATGAGAATCTTTGAACTCTTAGATGTGAACCTTAAAATTTAT
Found at i:9392771 original size:18 final size:18
Alignment explanation
Indices: 9392744--9392780 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
9392734 GAAAATTTTT
* *
9392744 TGAAAGTTCTTGCGAATC
1 TGAAAATTCTTACGAATC
9392762 TGAAAATTCTTACGAATC
1 TGAAAATTCTTACGAATC
9392780 T
1 T
9392781 TTGAATTATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (18 bp):
TGAAAATTCTTACGAATC
Found at i:9392800 original size:15 final size:15
Alignment explanation
Indices: 9392780--9392809 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9392770 CTTACGAATC
9392780 TTTGAATTATGAACT
1 TTTGAATTATGAACT
*
9392795 TTTGAATTTTGAACT
1 TTTGAATTATGAACT
9392810 CAAATTGTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.13, T:0.50
Consensus pattern (15 bp):
TTTGAATTATGAACT
Found at i:9393623 original size:12 final size:11
Alignment explanation
Indices: 9393604--9393634 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
9393594 GAAAGAAAGC
9393604 AAAGAGAAGAA
1 AAAGAGAAGAA
9393615 AAGAGAGAAGAA
1 AA-AGAGAAGAA
9393627 AAAGAGAA
1 AAAGAGAA
9393635 ATCTAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (11 bp):
AAAGAGAAGAA
Found at i:9394374 original size:171 final size:173
Alignment explanation
Indices: 9394182--9394493 Score: 461
Period size: 171 Copynumber: 1.8 Consensus size: 173
9394172 ATTAAATATT
* * * * *
9394182 AATTATCCAATGATGAGATTCTTAGAAGTTTCAAATGGTAAATTCTCT-AAGAAATCTTTAGGTG
1 AATTATCCAATGATAAGATTCTTAGAAATTTCAAATAGTAAATTCTCTAAAAAAAT-TCTAGGTG
* * * * *
9394246 AGAAATTTATTTAAATTTGTCTCAAATTG-TGAATAATTTAGATGAAATTTCAATAAAAGTAATT
65 AGAAATTTATTTAAATTTGTCTCAAATTGAGGAAAAATTTAAATGAAACTTCAAGAAAA-TAATT
9394310 GT-ATTCT-TTTTCAAATAAAAAATTATGGTTGAAAATATTTGAC
129 GTCATTCTATTTTCAAATAAAAAATTATGGTTGAAAATATTTGAC
*
9394353 AATTATCCAATGATAAGATTCTTAGAAATTTCAAATAGTAAATTTTCTAAAAAAATTCTAGGTGA
1 AATTATCCAATGATAAGATTCTTAGAAATTTCAAATAGTAAATTCTCTAAAAAAATTCTAGGTGA
* *
9394418 GAAATTTCTTTAAATTTGTTTCAAATTGAGGAAAAATTTAAATGAAACTTCAAGAAAATAATTGT
66 GAAATTTATTTAAATTTGTCTCAAATTGAGGAAAAATTTAAATGAAACTTCAAGAAAATAATTGT
9394483 CATTCTATTTT
131 CATTCTATTTT
9394494 TTTTCCAAAG
Statistics
Matches: 124, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
171 85 0.69
172 35 0.28
173 4 0.03
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (173 bp):
AATTATCCAATGATAAGATTCTTAGAAATTTCAAATAGTAAATTCTCTAAAAAAATTCTAGGTGA
GAAATTTATTTAAATTTGTCTCAAATTGAGGAAAAATTTAAATGAAACTTCAAGAAAATAATTGT
CATTCTATTTTCAAATAAAAAATTATGGTTGAAAATATTTGAC
Found at i:9394626 original size:48 final size:47
Alignment explanation
Indices: 9394518--9394626 Score: 132
Period size: 47 Copynumber: 2.3 Consensus size: 47
9394508 AATAAAAAGG
*
9394518 ATGAAAAAAAGAATTTCGAAATTGACCAAATGGTGAAAAATTTAAAA
1 ATGAAAAAAAAAATTTCGAAATTGACCAAATGGTGAAAAATTTAAAA
* * * *
9394565 ATCAAAAAGAAAATTTCTAAATT-AGCCTAAATGGTG-AAAATTTAGAA
1 ATGAAAAAAAAAATTTCGAAATTGA-CC-AAATGGTGAAAAATTTAAAA
9394612 ATGAAAAATAAAAAT
1 ATGAAAAA-AAAAAT
9394627 AAAATAATTC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
46 1 0.02
47 38 0.73
48 13 0.25
ACGTcount: A:0.56, C:0.06, G:0.13, T:0.25
Consensus pattern (47 bp):
ATGAAAAAAAAAATTTCGAAATTGACCAAATGGTGAAAAATTTAAAA
Found at i:9396832 original size:3 final size:3
Alignment explanation
Indices: 9396824--9396878 Score: 67
Period size: 3 Copynumber: 18.7 Consensus size: 3
9396814 GCTGCTTGCT
* * * *
9396824 TTA TTA TTA TTA TTA TTA TTA -TG TTG TTA TTA TTT TTA TTA TTA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9396871 TTA TTA TT
1 TTA TTA TT
9396879 GTAGTCGTCA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
2 1 0.02
3 44 0.98
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:9397752 original size:2 final size:2
Alignment explanation
Indices: 9397745--9397782 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
9397735 CTCAAGTTTG
* *
9397745 TA TA TA TA AA TA TA CA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9397783 AAAGAGATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:9398814 original size:14 final size:14
Alignment explanation
Indices: 9398795--9398824 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
9398785 ATATACTAAC
9398795 AATACATTAAATAT
1 AATACATTAAATAT
9398809 AATACATTAAATAT
1 AATACATTAAATAT
9398823 AA
1 AA
9398825 ACTCTTTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (14 bp):
AATACATTAAATAT
Found at i:9402358 original size:16 final size:16
Alignment explanation
Indices: 9402337--9402368 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
9402327 AAGTAAAAAG
*
9402337 TGCTACAGCCACTACC
1 TGCTACAACCACTACC
9402353 TGCTACAACCACTACC
1 TGCTACAACCACTACC
9402369 AGTACTATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.44, G:0.09, T:0.19
Consensus pattern (16 bp):
TGCTACAACCACTACC
Found at i:9402788 original size:18 final size:17
Alignment explanation
Indices: 9402754--9402797 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
9402744 TTATGATATT
9402754 TTATGAAAATTTGAAAAA
1 TTAT-AAAATTTGAAAAA
*
9402772 TTATAAAATTTTTAAAAA
1 TTATAAAA-TTTGAAAAA
*
9402790 TAATAAAA
1 TTATAAAA
9402798 AATAGTAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (17 bp):
TTATAAAATTTGAAAAA
Found at i:9409273 original size:16 final size:16
Alignment explanation
Indices: 9409254--9409288 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
9409244 TGTAATAGCA
*
9409254 TATCTTTAACAATTGG
1 TATCCTTAACAATTGG
9409270 TATCCTTAACAATTGG
1 TATCCTTAACAATTGG
9409286 TAT
1 TAT
9409289 GAGCTTGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.43
Consensus pattern (16 bp):
TATCCTTAACAATTGG
Found at i:9410628 original size:22 final size:22
Alignment explanation
Indices: 9410603--9410646 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
9410593 GAAAATTCTC
*
9410603 TATAATTCGTACTCAATGAATT
1 TATAATTCATACTCAATGAATT
9410625 TATAATTCATACTCAATGAATT
1 TATAATTCATACTCAATGAATT
9410647 AGGTGATCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.41
Consensus pattern (22 bp):
TATAATTCATACTCAATGAATT
Found at i:9411350 original size:16 final size:19
Alignment explanation
Indices: 9411329--9411377 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 19
9411319 TTTTATGTAT
9411329 TGTATTATTTATT-AT-TA
1 TGTATTATTTATTAATATA
*
9411346 T-TATTATGTATTAATATA
1 TGTATTATTTATTAATATA
9411364 TGTATATATTTATT
1 TGTAT-TATTTATT
9411378 TATTTATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 10 0.38
17 3 0.12
18 3 0.12
19 3 0.12
20 7 0.27
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (19 bp):
TGTATTATTTATTAATATA
Found at i:9412128 original size:13 final size:13
Alignment explanation
Indices: 9412112--9412139 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
9412102 TCTTGTCTTG
9412112 TTTATTTGTTTAT
1 TTTATTTGTTTAT
9412125 TTTATTTGTTTAT
1 TTTATTTGTTTAT
9412138 TT
1 TT
9412140 ATTAGATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (13 bp):
TTTATTTGTTTAT
Found at i:9412380 original size:60 final size:58
Alignment explanation
Indices: 9412213--9412623 Score: 453
Period size: 58 Copynumber: 6.9 Consensus size: 58
9412203 ATAAAATAAA
* *
9412213 AAATTCCAAAAATAATATATTTTTTAGGGAAAAGTTGAAAGTATCCAATTTTCCTTAG--AAT
1 AAATTTCAAAAA-AA-ATA-TTTTTGGGGAAAAGTTGAAAGTAT-CAATTTTCC-TAGAAAAT
* *
9412274 AAATTTCCAAAAAACTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAG-AAAT
1 AAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT-AGAAAAT
*
9412332 -AATTTCAAAAAAAAATATTTTTAGGGAAAAGTTTCGAAAGTATCAATTTTCCTTAAAAGAAAAT
1 AAATTTC-AAAAAAAATATTTTTGGGGAAAAG-TT-GAAAGTATCAATTTTCC-T---AGAAAAT
*
9412396 AAATTTCCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAA-TTTCCTTGAAAATTT
1 AAATTT-CAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTAGAAAA--T
9412456 AAAATTTC-AAAAAAATATTTTTGGGG-AAAGTTGAAAGTATCAATTTTTCCTTAG-AAAT
1 -AAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAA-TTTTCC-TAGAAAAT
* *** * *
9412514 AATTTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
1 AAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTAGAAAAT
9412572 CGAAATTTTC-AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 --AAA-TTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
9412624 CTAAAAAAAA
Statistics
Matches: 305, Mismatches: 22, Indels: 47
0.82 0.06 0.13
Matches are distributed among these distances:
56 1 0.00
57 25 0.08
58 94 0.31
59 39 0.13
60 69 0.23
61 24 0.08
62 5 0.02
63 13 0.04
64 6 0.02
65 28 0.09
66 1 0.00
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.35
Consensus pattern (58 bp):
AAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTAGAAAAT
Found at i:9416469 original size:19 final size:18
Alignment explanation
Indices: 9416445--9416494 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
9416435 ACACTGGATG
9416445 AAAAATGAGAAAAGAAAAA
1 AAAAATGA-AAAAGAAAAA
*
9416464 AAAAATGAAAAA-AAAGGGA
1 AAAAATGAAAAAGAAA--AA
9416483 AAAAATGAAAAA
1 AAAAATGAAAAA
9416495 ATGAAAAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 3 0.11
18 4 0.14
19 21 0.75
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.06
Consensus pattern (18 bp):
AAAAATGAAAAAGAAAAA
Found at i:9416475 original size:27 final size:26
Alignment explanation
Indices: 9416445--9416507 Score: 65
Period size: 28 Copynumber: 2.4 Consensus size: 26
9416435 ACACTGGATG
*
9416445 AAAAATGAGAAAAGAAAAAAAAAATGAA
1 AAAAAAGAGAAAA-AAAAAAAAAATG-A
* **
9416473 AAAAAAGGGAAAAAATGAAAAAATG-
1 AAAAAAGAGAAAAAAAAAAAAAATGA
9416498 AAAAAAGAGA
1 AAAAAAGAGA
9416508 TCCAAATTGA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
25 9 0.30
27 10 0.33
28 11 0.37
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.06
Consensus pattern (26 bp):
AAAAAAGAGAAAAAAAAAAAAAATGA
Found at i:9417817 original size:41 final size:41
Alignment explanation
Indices: 9417731--9418547 Score: 1149
Period size: 40 Copynumber: 20.1 Consensus size: 41
9417721 ATGATTTTCA
9417731 AGGAGCAATTTACTTTTCAAAGTTCGT--TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAG
* *
9417771 AGGAGCAATTTACTTTCCAAAGTCGTGGTACCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
9417812 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
9417853 AGGATCAATTTAC-TTTCAAAGTTTCAT--TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAG--TCGTGGTGCCTCTGTTTAG
9417893 AGGAGCAATTTAC-TTTCAAAGTTCCGT--TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAG-T-CGTGGTGCCTCTGTTTAG
* *
9417933 AGGAGCAATTTACTTTCCAAAGTCGTGGTACCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
9417974 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * *
9418015 AGGAGCAATTTTATTTTTC-AAGTCTTGGTACCTCTG-TTAG
1 AGGAGCAA-TTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
9418055 AGGAGCAATTTACTTTTCAAAGTTCGT--TGCATCTATTTAG
1 AGGAGCAATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAG
9418095 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
9418136 AGGAGC-ATTTATTTTTCAAAGTCGTGGTACCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
9418176 AGGAGCAATTTACTTTTCAAAGTTCGT--TGCCTCTATTTAG
1 AGGAGCAATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAG
*
9418216 AGGAGCAATTTACTTTTCAAAGTTCGT--TGCCTCTATTTAG
1 AGGAGCAATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAG
* *
9418256 AAGAGCAATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTAG
1 AGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAG
* *
9418298 AGGAGCAATTTACTTTTCAGAGTTCGT--TGCCTCTATTTAG
1 AGGAGCAATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAG
*
9418338 AGGAGCAATTTACTTTTCAAAAGTCGTGGTACCTCTGTTTAG
1 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
9418380 AGGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAG
9418421 AGGAGCAATTTACTTTTCAAAGTTCGT--TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAG
*
9418461 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
9418502 AGGAGCAATTTAC-TTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
9418542 AGGAGC
1 AGGAGC
9418548 TTCGGCAAAA
Statistics
Matches: 709, Mismatches: 40, Indels: 56
0.88 0.05 0.07
Matches are distributed among these distances:
39 31 0.04
40 339 0.48
41 260 0.37
42 79 0.11
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:9417969 original size:162 final size:161
Alignment explanation
Indices: 9417731--9418547 Score: 1190
Period size: 162 Copynumber: 5.0 Consensus size: 161
9417721 ATGATTTTCA
9417731 AGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCG
1 AGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCG
* *
9417796 TGGTACCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGATCAA
66 TGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
*
9417861 TTTACTTTCAAAGTTTCATTGCCTCTGTTTAG
131 TTTACTTTCAAAG-TTCGTTGCCTCTGTTTAG
9417893 AGGAGCAATTTAC-TTTCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTC
1 AGGAGCAATTTACTTTTCAAAGTT-CGTTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTC
9417957 GTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
65 GTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
* * * *
9418022 ATTTTATTTTTC-AAGTCTTGGTACCTCTG-TTAG
130 A-TTTA-CTTTCAAAGT-TCGTTGCCTCTGTTTAG
* * *
9418055 AGGAGCAATTTACTTTTCAAAGTTCGTTGCATCTATTTAGAGGAGCAATTTACTTTTCAAAGTCG
1 AGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCG
* * *
9418120 TGGTGCCTCTGTTTAGAGGAGC-ATTTATTTTTCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAA
66 TGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
*
9418184 TTTACTTTTCAAAGTTCGTTGCCTCTATTTAG
131 TTTAC-TTTCAAAGTTCGTTGCCTCTGTTTAG
* *
9418216 AGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTATTTAGAAGAGCAATTTACTTTTCCAAAGTC
1 AGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTAC-TTTCCAAAGTC
* *
9418281 GTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAGAGTTCGT--TGCCTCTATTTAGAGGAGC
65 GTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGC
*
9418344 AATTTACTTTTCAAAAG-TCGTGGTACCTCTGTTTAG
129 AATTTAC-TTTC-AAAGTTCGT--TGCCTCTGTTTAG
*
9418380 AGGAGCAATTTA-TTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG
1 AGGAGCAATTTACTTTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAG
* *
9418443 TTCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGA
63 -TCGTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGA
9418506 GCAATTTACTTTCAAAG-TCGTGGTGCCTCTGTTTAG
127 GCAATTTACTTTCAAAGTTCGT--TGCCTCTGTTTAG
9418542 AGGAGC
1 AGGAGC
9418548 TTCGGCAAAA
Statistics
Matches: 599, Mismatches: 36, Indels: 40
0.89 0.05 0.06
Matches are distributed among these distances:
160 16 0.03
161 109 0.18
162 291 0.49
163 86 0.14
164 69 0.12
165 28 0.05
ACGTcount: A:0.24, C:0.18, G:0.21, T:0.37
Consensus pattern (161 bp):
AGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCG
TGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
TTTACTTTCAAAGTTCGTTGCCTCTGTTTAG
Found at i:9418573 original size:15 final size:15
Alignment explanation
Indices: 9418553--9418589 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
9418543 GGAGCTTCGG
9418553 CAAAAAAAAAAAAAA
1 CAAAAAAAAAAAAAA
* *
9418568 CAAAAAACAAAAAAC
1 CAAAAAAAAAAAAAA
9418583 CAAAAAA
1 CAAAAAA
9418590 TGTTGAGTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (15 bp):
CAAAAAAAAAAAAAA
Found at i:9418586 original size:8 final size:7
Alignment explanation
Indices: 9418555--9418589 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
9418545 AGCTTCGGCA
*
9418555 AAAAAAA
1 AAAAAAC
9418562 AAAAAAC
1 AAAAAAC
9418569 AAAAAAC
1 AAAAAAC
9418576 AAAAAACC
1 AAAAAA-C
9418584 AAAAAA
1 AAAAAA
9418590 TGTTGAGTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:9418834 original size:28 final size:28
Alignment explanation
Indices: 9418772--9418834 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 28
9418762 TCTTCTTTTG
*
9418772 TATTTATGTATTGTATTATTATATTATT
1 TATTTATGTATTATATTATTATATTATT
* *
9418800 AAATTATGTATTA-ATATATGTATA-TATT
1 TATTTATGTATTATAT-TAT-TATATTATT
9418828 TATTTAT
1 TATTTAT
9418835 TATATTTTTG
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
27 2 0.07
28 22 0.79
29 4 0.14
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (28 bp):
TATTTATGTATTATATTATTATATTATT
Found at i:9420572 original size:41 final size:42
Alignment explanation
Indices: 9420432--9420712 Score: 418
Period size: 41 Copynumber: 6.9 Consensus size: 42
9420422 NNNNNNNNNN
*
9420432 CTTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTA
1 CTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
* *
9420474 CTTTT-CAGAGTTCGT--TGCCTCTATTTAGAGGAGCAATTTA
1 CTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
* *
9420514 CTTTTCAAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTA
1 CTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
9420556 -TTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
1 CTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
9420597 CTTTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTA
1 CTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
*
9420637 C-TTTCCAAAATCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
1 CTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
*
9420678 -TTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
1 CTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
9420713 TTTGGTAAAA
Statistics
Matches: 217, Mismatches: 12, Indels: 21
0.87 0.05 0.08
Matches are distributed among these distances:
39 7 0.03
40 62 0.29
41 108 0.50
42 40 0.18
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (42 bp):
CTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
Done.