Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 62 of 129
Found at i:9420651 original size:81 final size:81
Alignment explanation
Indices: 9420432--9420712 Score: 397
Period size: 81 Copynumber: 3.4 Consensus size: 81
9420422 NNNNNNNNNN
* * **
9420432 CTTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAGAGTTCGT--TGCCTC
1 CTTTT-CAAAGTCGT-GTGCCTCTGTTTAGAGGAGCAATTTACTTTCCA-AAATCGTGGTGCCTC
*
9420495 TATTTAGAGGAGCAATTTA
63 TGTTTAGAGGAGCAATTTA
* * *
9420514 CTTTTCAAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCT
1 CTTTTC-AAAGTCGT-GTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAATCGTGGTGCCTCT
9420579 GTTTAGAGGAGCAATTTA
64 GTTTAGAGGAGCAATTTA
9420597 CTTTTCAAAGTTCGT-TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAATCGTGGTGCCTCTG
1 CTTTTCAAAG-TCGTGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAATCGTGGTGCCTCTG
9420661 TTTAGAGGAGCAATTTA
65 TTTAGAGGAGCAATTTA
*
9420678 TTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
1 CTTTTCAAAGTCGT-GTGCCTCTGTTTAGAGGAGC
9420713 TTTGGTAAAA
Statistics
Matches: 184, Mismatches: 9, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
80 4 0.02
81 78 0.42
82 68 0.37
83 34 0.18
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (81 bp):
CTTTTCAAAGTCGTGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAATCGTGGTGCCTCTGT
TTAGAGGAGCAATTTA
Found at i:9420683 original size:123 final size:123
Alignment explanation
Indices: 9420433--9420712 Score: 499
Period size: 123 Copynumber: 2.3 Consensus size: 123
9420423 NNNNNNNNNC
* *
9420433 TTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAGAGTTCGTTGCCTCTAT
1 TTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTAT
*
9420498 TTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTA
66 TTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTA
*
9420556 TTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTGT
1 TTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTAT
*
9420621 TTAGAGGAGCAATTTACTTTCCAAAA-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTA
66 TTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTA
*
9420678 TTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
1 TTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
9420713 TTTGGTAAAA
Statistics
Matches: 151, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
122 64 0.42
123 87 0.58
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (123 bp):
TTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTAT
TTAGAGGAGCAATTTACTTTCCAAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTA
Found at i:9420966 original size:16 final size:19
Alignment explanation
Indices: 9420945--9420993 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 19
9420935 TTTTATGTAT
9420945 TGTATTATTTATT-AT-TA
1 TGTATTATTTATTAATATA
*
9420962 T-TATTATGTATTAATATA
1 TGTATTATTTATTAATATA
9420980 TGTATATATTTATT
1 TGTAT-TATTTATT
9420994 TATTTATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 10 0.38
17 3 0.12
18 3 0.12
19 3 0.12
20 7 0.27
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (19 bp):
TGTATTATTTATTAATATA
Found at i:9421487 original size:25 final size:25
Alignment explanation
Indices: 9421458--9421511 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
9421448 CTGGGAGTGA
*
9421458 GAAAAAATTTT-TAGAAATTTTTGG
1 GAAAAAATTTTCTAGAAATTTCTGG
* *
9421482 CGAAAAATTTTTCTGGAAATTTCTGG
1 -GAAAAAATTTTCTAGAAATTTCTGG
9421508 GAAA
1 GAAA
9421512 TTTCCTGAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.39, C:0.06, G:0.19, T:0.37
Consensus pattern (25 bp):
GAAAAAATTTTCTAGAAATTTCTGG
Found at i:9421556 original size:31 final size:32
Alignment explanation
Indices: 9421521--9421591 Score: 103
Period size: 31 Copynumber: 2.3 Consensus size: 32
9421511 ATTTCCTGAA
*
9421521 TCCGGCGAA-AATTCTGGCGAA-ATTTGAATTT
1 TCCGGCGAACAATTCTGGCGAACA-TTGAAGTT
9421552 TCCGGC-AACAATTCTGGCGAACATTGAAGTT
1 TCCGGCGAACAATTCTGGCGAACATTGAAGTT
9421583 TCCGGCGAA
1 TCCGGCGAA
9421592 GAATCTCAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
30 2 0.06
31 31 0.86
32 3 0.08
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (32 bp):
TCCGGCGAACAATTCTGGCGAACATTGAAGTT
Found at i:9422195 original size:59 final size:58
Alignment explanation
Indices: 9422127--9422472 Score: 518
Period size: 57 Copynumber: 5.8 Consensus size: 58
9422117 AAATAAAAAA
9422127 TTCCAAAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
1 TTCC-AAAAAA-ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
* *
9422187 TTCC-AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAAT
1 TTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
*
9422244 TTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTA-AGAATAAAT
1 TTC-CAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGA-AATAAAT
*
9422303 TTCCAAAAATA-ATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAAT
1 TTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT---AG--AAATAAAT
*
9422365 TTCCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
1 TTCC-AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
* *
9422424 TTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTA
1 TTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTA
9422473 AAAAAAAAAT
Statistics
Matches: 265, Mismatches: 10, Indels: 24
0.89 0.03 0.08
Matches are distributed among these distances:
57 85 0.32
58 57 0.22
59 63 0.24
60 5 0.02
61 2 0.01
62 11 0.04
63 7 0.03
64 35 0.13
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (58 bp):
TTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
Found at i:9422253 original size:116 final size:117
Alignment explanation
Indices: 9422124--9422482 Score: 541
Period size: 116 Copynumber: 3.0 Consensus size: 117
9422114 TAAAAATAAA
*
9422124 AAATTCCAAAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTT
1 AAATTTCAAAAAAA-ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTT
*
9422189 CCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT-CAG-AAAT
65 CCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTAAAGAAAAT
9422240 AAATTTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTA-AGAATAAATT
1 AAATTTC-AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGA-AATAAATT
*
9422304 TCC-AAAAATAATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAAT
64 TCCAAAAAAT-ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC-T-AAAG-AAAAT
*
9422361 AAATTTCCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTT
1 AAATTT-CAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TT
*
9422426 TCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAA-AAAA-
64 TCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC-TAAAGAAAAT
9422479 AAAT
1 AAAT
9422483 CATTCTTTCC
Statistics
Matches: 225, Mismatches: 6, Indels: 22
0.89 0.02 0.09
Matches are distributed among these distances:
115 7 0.03
116 89 0.40
117 8 0.04
118 4 0.02
119 6 0.03
121 64 0.28
122 41 0.18
123 6 0.03
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.33
Consensus pattern (117 bp):
AAATTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTAAAGAAAAT
Found at i:9422345 original size:27 final size:27
Alignment explanation
Indices: 9422257--9422345 Score: 74
Period size: 27 Copynumber: 3.2 Consensus size: 27
9422247 AAAAAAAAAT
9422257 ATTTTTAGGGAAAAGTTGAAAGTATCA
1 ATTTTTAGGGAAAAGTTGAAAGTATCA
* * * * *
9422284 ATTTTCCTTAAGAATAAATTTCCAAA-AAT-A
1 A-TTT--TTAGGGA-AAAGTT-GAAAGTATCA
9422314 ATTTTTAGGGAAAAGTTGAAAGTATCA
1 ATTTTTAGGGAAAAGTTGAAAGTATCA
9422341 ATTTT
1 ATTTT
9422346 CCTTAAAAGA
Statistics
Matches: 45, Mismatches: 10, Indels: 14
0.65 0.14 0.20
Matches are distributed among these distances:
25 3 0.07
26 7 0.16
27 12 0.27
28 3 0.07
29 3 0.07
30 7 0.16
31 7 0.16
32 3 0.07
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.37
Consensus pattern (27 bp):
ATTTTTAGGGAAAAGTTGAAAGTATCA
Found at i:9435041 original size:21 final size:21
Alignment explanation
Indices: 9435017--9435135 Score: 104
Period size: 21 Copynumber: 5.5 Consensus size: 21
9435007 AATTAGTTAA
9435017 AATAAATAA-AAATTATCATGC
1 AATAAATAATAAA-TATCATGC
9435038 AAT-AATAATATAATATCATGC
1 AATAAATAATA-AATATCATGC
*
9435059 AA-CAATAATATAATATCATGC
1 AATAAATAATA-AATATCATGC
9435080 AATTATAAT-ATAATATATCATGC
1 AA-TA-AATAATAA-ATATCATGC
*
9435103 -ATTAATAATAAACTATCATGC
1 AATAAATAATAAA-TATCATGC
*
9435124 AATTATATAATA
1 AA-TAAATAATA
9435136 TACCAATAAT
Statistics
Matches: 83, Mismatches: 4, Indels: 20
0.78 0.04 0.19
Matches are distributed among these distances:
20 9 0.11
21 47 0.57
22 5 0.06
23 19 0.23
24 3 0.04
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.34
Consensus pattern (21 bp):
AATAAATAATAAATATCATGC
Found at i:9435113 original size:26 final size:21
Alignment explanation
Indices: 9435030--9435137 Score: 137
Period size: 21 Copynumber: 5.0 Consensus size: 21
9435020 AAATAAAAAT
9435030 TATCATGCAATAATAATATAA
1 TATCATGCAATAATAATATAA
*
9435051 TATCATGCAACAATAATATAA
1 TATCATGCAATAATAATATAA
*
9435072 TATCATGCAATTATAATATAATA
1 TATCATGCAATAATAATAT-A-A
*
9435095 TATCATGCATTAATAATA-AA
1 TATCATGCAATAATAATATAA
9435115 CTATCATGCAATTATATAATATA
1 -TATCATGCAA-TA-ATAATATA
9435138 CCAATAATTT
Statistics
Matches: 75, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.01
21 47 0.63
22 3 0.04
23 23 0.31
24 1 0.01
ACGTcount: A:0.49, C:0.11, G:0.05, T:0.35
Consensus pattern (21 bp):
TATCATGCAATAATAATATAA
Found at i:9435120 original size:44 final size:41
Alignment explanation
Indices: 9435021--9435130 Score: 141
Period size: 44 Copynumber: 2.6 Consensus size: 41
9435011 AGTTAAAATA
*
9435021 AATAA-AAATTATCATGCAATAATAATATAATATCATGCAAC
1 AATAATAAA-TATCATGCAATTATAATATAATATCATGCAAC
**
9435062 AATAATATAATATCATGCAATTATAATATAATATATCATGCATT
1 AATAATA-AATATCATGCAATTATAATAT-A-ATATCATGCAAC
9435106 AATAATAAACTATCATGCAATTATA
1 AATAATAAA-TATCATGCAATTATA
9435131 TAATATACCA
Statistics
Matches: 61, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
41 5 0.08
42 19 0.31
43 5 0.08
44 32 0.52
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.34
Consensus pattern (41 bp):
AATAATAAATATCATGCAATTATAATATAATATCATGCAAC
Found at i:9435182 original size:15 final size:14
Alignment explanation
Indices: 9435157--9435190 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
9435147 TTGCAAATAA
9435157 TAAATATAATCATG
1 TAAATATAATCATG
9435171 TAAATAATAATCATG
1 TAAAT-ATAATCATG
*
9435186 CAAAT
1 TAAAT
9435191 TGAATTTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.32
Consensus pattern (14 bp):
TAAATATAATCATG
Found at i:9435308 original size:10 final size:10
Alignment explanation
Indices: 9435275--9435308 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
9435265 ATTAATTAAT
9435275 AAATAACAAA
1 AAATAACAAA
*
9435285 AAAAAACAAA
1 AAATAACAAA
*
9435295 AAATAAGAAA
1 AAATAACAAA
9435305 AAAT
1 AAAT
9435309 GAAGATAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.82, C:0.06, G:0.03, T:0.09
Consensus pattern (10 bp):
AAATAACAAA
Found at i:9435361 original size:24 final size:25
Alignment explanation
Indices: 9435304--9435361 Score: 59
Period size: 24 Copynumber: 2.4 Consensus size: 25
9435294 AAAATAAGAA
*
9435304 AAAATGAAGATAAAATAAAAATTAGG
1 AAAAT-AAAATAAAATAAAAATTAGG
*
9435330 AACA-AAAATAAAA-AGAAAA-TAGG
1 AAAATAAAATAAAATA-AAAATTAGG
9435353 AAAATAAAA
1 AAAATAAAA
9435362 GCCAAATCGC
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
23 8 0.30
24 16 0.59
26 3 0.11
ACGTcount: A:0.72, C:0.02, G:0.12, T:0.14
Consensus pattern (25 bp):
AAAATAAAATAAAATAAAAATTAGG
Found at i:9436275 original size:26 final size:25
Alignment explanation
Indices: 9436242--9436290 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
9436232 AGCTTTGACT
*
9436242 AAAATTAAAAGTTAAACTAAAAAAAA
1 AAAATTAAAA-TCAAACTAAAAAAAA
*
9436268 AAAATTAAAATCAAATTAAAAAA
1 AAAATTAAAATCAAACTAAAAAA
9436291 TTTTGGGCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.20
Consensus pattern (25 bp):
AAAATTAAAATCAAACTAAAAAAAA
Found at i:9436796 original size:50 final size:50
Alignment explanation
Indices: 9436726--9436838 Score: 131
Period size: 50 Copynumber: 2.3 Consensus size: 50
9436716 AGAACTCAAA
*
9436726 TTCTCAAGATTTTCAAATTTGCAAGAA-CTAAAATTTACAAGAAATTTAGT
1 TTCTCAAGAATTTCAAATTTGCAAGAATCTAAAATTTACAAGAAATTTA-T
* * * * * *
9436776 TTCTCAAGAATTTCAGATTTGCACGAATTTAAGATTTGCAAGAATTTTAT
1 TTCTCAAGAATTTCAAATTTGCAAGAATCTAAAATTTACAAGAAATTTAT
9436826 TTCAT-AAGAATTT
1 TTC-TCAAGAATTT
9436839 TGAAATACAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
50 36 0.67
51 18 0.33
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.39
Consensus pattern (50 bp):
TTCTCAAGAATTTCAAATTTGCAAGAATCTAAAATTTACAAGAAATTTAT
Found at i:9436803 original size:17 final size:17
Alignment explanation
Indices: 9436742--9436822 Score: 69
Period size: 17 Copynumber: 4.8 Consensus size: 17
9436732 AGATTTTCAA
* *
9436742 ATTTGCAAGAA-CTAAA
1 ATTTGCAAGAATTTAAG
*
9436758 ATTTACAAGAAATTT-AG
1 ATTTGCAAG-AATTTAAG
* *
9436775 -TTTCTCAAGAATTTCAG
1 ATTT-GCAAGAATTTAAG
*
9436792 ATTTGCACGAATTTAAG
1 ATTTGCAAGAATTTAAG
9436809 ATTTGCAAGAATTT
1 ATTTGCAAGAATTT
9436823 TATTTCATAA
Statistics
Matches: 52, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
16 16 0.31
17 32 0.62
18 4 0.08
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.36
Consensus pattern (17 bp):
ATTTGCAAGAATTTAAG
Found at i:9436908 original size:17 final size:18
Alignment explanation
Indices: 9436882--9436915 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
9436872 TCAGTTTTTC
9436882 AAGAATTTTTAGATTCAT
1 AAGAATTTTTAGATTCAT
9436900 AAGAA-TTTTAGATTCA
1 AAGAATTTTTAGATTCA
9436916 CAAATTCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (18 bp):
AAGAATTTTTAGATTCAT
Found at i:9437207 original size:23 final size:24
Alignment explanation
Indices: 9437172--9437239 Score: 79
Period size: 22 Copynumber: 3.0 Consensus size: 24
9437162 TTCACACCTA
**
9437172 AAAGATTTTCATTTGAAAAACTT-
1 AAAGATTCACATTTGAAAAACTTC
* *
9437195 AAGGATTCACATTCG--AAACTTC
1 AAAGATTCACATTTGAAAAACTTC
9437217 AAAGATTCACATTTGAAAAACTT
1 AAAGATTCACATTTGAAAAACTT
9437240 TAGTGTTTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
21 6 0.17
22 13 0.36
23 11 0.31
24 6 0.17
ACGTcount: A:0.43, C:0.15, G:0.10, T:0.32
Consensus pattern (24 bp):
AAAGATTCACATTTGAAAAACTTC
Found at i:9437281 original size:45 final size:47
Alignment explanation
Indices: 9437172--9437338 Score: 175
Period size: 45 Copynumber: 3.7 Consensus size: 47
9437162 TTCACACCTA
* * * * *
9437172 AAAGATTTTCATTTGAAAAACTTAAG-GA-TTCACATTCGAAACTTC
1 AAAGATTCTCATTTGAAAAACTTTAGTGATTTTACATCCAAAACTTC
*
9437217 AAAGATTCACATTTGAAAAACTTTAGTG-TTTTACATCCAAAA-TATC
1 AAAGATTCTCATTTGAAAAACTTTAGTGATTTTACATCCAAAACT-TC
* * * *
9437263 AAAGATTCTCA-TTCAAAAACTTTA-TGATTTTATATCTAAAACTTT
1 AAAGATTCTCATTTGAAAAACTTTAGTGATTTTACATCCAAAACTTC
* *
9437308 AAAGGTTCTCATTTGAAAAATTTTAGTGATT
1 AAAGATTCTCATTTGAAAAACTTTAGTGATT
9437339 ATGTCCGAAG
Statistics
Matches: 101, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
44 2 0.02
45 59 0.58
46 35 0.35
47 5 0.05
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.38
Consensus pattern (47 bp):
AAAGATTCTCATTTGAAAAACTTTAGTGATTTTACATCCAAAACTTC
Found at i:9437291 original size:22 final size:22
Alignment explanation
Indices: 9437266--9437308 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
9437256 AAATATCAAA
9437266 GATTCTCAT-TCAAAAACTTTAT
1 GATT-TCATATCAAAAACTTTAT
* *
9437288 GATTTTATATCTAAAACTTTA
1 GATTTCATATCAAAAACTTTA
9437309 AAGGTTCTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.37, C:0.14, G:0.05, T:0.44
Consensus pattern (22 bp):
GATTTCATATCAAAAACTTTAT
Found at i:9439110 original size:17 final size:17
Alignment explanation
Indices: 9439088--9439121 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9439078 ATCCCAATAG
9439088 ATTAATAATATCAACTT
1 ATTAATAATATCAACTT
**
9439105 ATTAATTGTATCAACTT
1 ATTAATAATATCAACTT
9439122 GAATGATGCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.12, G:0.03, T:0.44
Consensus pattern (17 bp):
ATTAATAATATCAACTT
Found at i:9454054 original size:27 final size:27
Alignment explanation
Indices: 9454013--9454064 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
9454003 ATGAAAGAAT
9454013 GAAAAAAAAAAAAAAAGAAAAGAAAAG
1 GAAAAAAAAAAAAAAAGAAAAGAAAAG
* *
9454040 GAAAAAAAAAGAAAAAGAAATGAAA
1 GAAAAAAAAAAAAAAAGAAAAGAAA
9454065 TGAATGGGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (27 bp):
GAAAAAAAAAAAAAAAGAAAAGAAAAG
Found at i:9454064 original size:11 final size:11
Alignment explanation
Indices: 9454013--9454064 Score: 54
Period size: 11 Copynumber: 4.8 Consensus size: 11
9454003 ATGAAAGAAT
*
9454013 GAAAAAAAAAA
1 GAAAAGAAAAA
*
9454024 AAAAAG-AAAA
1 GAAAAGAAAAA
9454034 GAAAAGGAAAAA
1 GAAAA-GAAAAA
9454046 -AAAAGAAAAA
1 GAAAAGAAAAA
*
9454056 GAAATGAAA
1 GAAAAGAAA
9454065 TGAATGGGTG
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
10 14 0.41
11 16 0.47
12 4 0.12
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (11 bp):
GAAAAGAAAAA
Found at i:9454910 original size:246 final size:246
Alignment explanation
Indices: 9454476--9454931 Score: 770
Period size: 246 Copynumber: 1.9 Consensus size: 246
9454466 AAAAGTAGTC
* ** *
9454476 TAGAGCAAACTTTGAAGGCCATTTCTAATGCTAAATGTGGAAGATGTTGAACGAAGATAAGCCAA
1 TAGAGCAAACCTTGAAGGCCACATCTAATGCTAAAGGTGGAAGATGTTGAACGAAGATAAGCCAA
* * *
9454541 ACCTTATTGAAAGATTTGAAATATCAAAATCATAGAAGTTTGAGATGAGTTGATTTTAAAAATCT
66 ACCTTATTGAAAGATTTGAAATATCAAAATCACAGAAGTCTAAGATGAGTTGATTTTAAAAATCT
* *
9454606 CAACCTTTGTCCATTTCCAAATAACCTTTTAAAATCTCAATCCCTTATAGCTAACCTTGACATAT
131 CAACCTTTGTCCATTTCCAAATAACCTTTCAAAATCTCAAACCCTTATAGCTAACCTTGACATAT
*
9454671 ATCTAATTGTAACATTTGGCTCTAAGGTGAAAACCATAAAAAGAGGCAGTT
196 ATCAAATTGTAACATTTGGCTCTAAGGTGAAAACCATAAAAAGAGGCAGTT
*
9454722 TAGAGCAAACCTTGAAGGCCACATCTAATGCTAAAGGTGGTAGATGTTGAATC-AAGATAAGCCA
1 TAGAGCAAACCTTGAAGGCCACATCTAATGCTAAAGGTGGAAGATGTTGAA-CGAAGATAAGCCA
* *
9454786 AACCTTGTTGAAAGATTTGAAATATCAAAGTCACAGAAGTCTAAGATGAGTTGATTTTAAAAATC
65 AACCTTATTGAAAGATTTGAAATATCAAAATCACAGAAGTCTAAGATGAGTTGATTTTAAAAATC
*
9454851 TCAACCTTTGTCCATTTCCAAATAACCTTTCAAAATCTTAAACCCTTATAGCTAACCTTGACATA
130 TCAACCTTTGTCCATTTCCAAATAACCTTTCAAAATCTCAAACCCTTATAGCTAACCTTGACATA
9454916 TATCAAATTGTAACAT
195 TATCAAATTGTAACAT
9454932 CTGGAGATTA
Statistics
Matches: 195, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
246 194 0.99
247 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (246 bp):
TAGAGCAAACCTTGAAGGCCACATCTAATGCTAAAGGTGGAAGATGTTGAACGAAGATAAGCCAA
ACCTTATTGAAAGATTTGAAATATCAAAATCACAGAAGTCTAAGATGAGTTGATTTTAAAAATCT
CAACCTTTGTCCATTTCCAAATAACCTTTCAAAATCTCAAACCCTTATAGCTAACCTTGACATAT
ATCAAATTGTAACATTTGGCTCTAAGGTGAAAACCATAAAAAGAGGCAGTT
Found at i:9455244 original size:31 final size:32
Alignment explanation
Indices: 9455174--9455246 Score: 78
Period size: 31 Copynumber: 2.3 Consensus size: 32
9455164 AAGCTTAGTT
* *
9455174 TAGCTGGCATTAATGGAAAGTTAAGCCTAGAT
1 TAGCTAGCATTAATGGAAAGTTAAGCCTAGAG
* * *
9455206 TATCTAGCATTAGT-GAAATTTAAGCCTA-ACG
1 TAGCTAGCATTAATGGAAAGTTAAGCCTAGA-G
9455237 TAGCTAGCAT
1 TAGCTAGCAT
9455247 GCAAGCCTAG
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
30 1 0.03
31 22 0.65
32 11 0.32
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.30
Consensus pattern (32 bp):
TAGCTAGCATTAATGGAAAGTTAAGCCTAGAG
Found at i:9455337 original size:22 final size:22
Alignment explanation
Indices: 9455287--9455337 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
9455277 TCTTAAGCCT
*
9455287 AGATTACCTGGCACATAAGCTC
1 AGATTAGCTGGCACATAAGCTC
*
9455309 AGATTAGCTGGCACATAAGTTC
1 AGATTAGCTGGCACATAAGCTC
9455331 AGATTAG
1 AGATTAG
9455338 TTAAAAAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (22 bp):
AGATTAGCTGGCACATAAGCTC
Found at i:9455818 original size:103 final size:101
Alignment explanation
Indices: 9455503--9455830 Score: 306
Period size: 103 Copynumber: 3.2 Consensus size: 101
9455493 ATGTCTACAC
* * * * * *
9455503 AAAAATTTAAGCTCAGTTTACCTAGCACCAGATGAAAATTTTAAAGCCCAGCTTAGCTGGCTCTT
1 AAAATTTTAAGCCCAGTTTACCTAGCACCTGATGAAAATTTTAAAGCCCAGATTAGTTGGCT-TC
* * *
9455568 AATAAAAAATTTAAGCCTAGTTTACCTAGCA-TCTGATG
65 AATAAAAAATTTAAGCC-AATTTACTTAGAACT-TGATG
* * * * *
9455606 GAAATTTTAAGCCCAGTTTATCTAACACCTGATGAAAATTTTAAA-CCCAGATTACTTGACACTT
1 AAAATTTTAAGCCCAGTTTACCTAGCACCTGATGAAAATTTTAAAGCCCAGATTAGTTG--GCTT
* * * *
9455670 -GATAAAAAATTTAAGCCCAATTTA-TTTGAACCCTGAAG
64 CAATAAAAAATTTAAG-CCAATTTACTTAGAA-CTTGATG
* * * *
9455708 AAAATTTTAAGCCTAGTTTACCTAGCACCTGATGAAGATTTTTAAAGCTCAGTTTAGTTGGCTTC
1 AAAATTTTAAGCCCAGTTTACCTAGCACCTGATGAA-AATTTTAAAGCCCAGATTAGTTGGCTT-
* * *
9455773 CAAT-GAAAATTTAAGTCCAATTTACTTGGTACTTGATG
64 CAATAAAAAATTTAAG-CCAATTTACTTAGAACTTGATG
9455811 AAAATTTTAAGCCCAGTTTA
1 AAAATTTTAAGCCCAGTTTA
9455831 TCTGGCCCTT
Statistics
Matches: 181, Mismatches: 34, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
101 3 0.02
102 68 0.38
103 92 0.51
104 18 0.10
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33
Consensus pattern (101 bp):
AAAATTTTAAGCCCAGTTTACCTAGCACCTGATGAAAATTTTAAAGCCCAGATTAGTTGGCTTCA
ATAAAAAATTTAAGCCAATTTACTTAGAACTTGATG
Found at i:9455960 original size:35 final size:35
Alignment explanation
Indices: 9455879--9455962 Score: 93
Period size: 33 Copynumber: 2.5 Consensus size: 35
9455869 GCATCAAAGA
* * * *
9455879 AAGATTTTAAAGCCTAGTTTAGCTGACTCTCAGTG
1 AAGATTTTAAAGCTTAATTTACCTGACACTCAGTG
*
9455914 AA-AATTT-AAGCTTAATTTACCTGACACTC-GATG
1 AAGATTTTAAAGCTTAATTTACCTGACACTCAG-TG
9455947 AAGATTTTAAAGCTTA
1 AAGATTTTAAAGCTTA
9455963 GCTTAGCTAG
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
32 1 0.03
33 22 0.55
34 8 0.20
35 9 0.22
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (35 bp):
AAGATTTTAAAGCTTAATTTACCTGACACTCAGTG
Found at i:9456026 original size:34 final size:34
Alignment explanation
Indices: 9455503--9456034 Score: 189
Period size: 34 Copynumber: 15.6 Consensus size: 34
9455493 ATGTCTACAC
* **
9455503 AAAAATTTAAG-CTCAGTTTACCTAGCACCAGATG
1 AAAATTTTAAGCCT-AGTTTACCTAGCACTTGATG
* * * * * * *
9455537 AAAATTTTAAAGCCCAGCTTAGCTGGCTCTTAATA
1 AAAATTTT-AAGCCTAGTTTACCTAGCACTTGATG
*
9455572 AAAAATTTAAGCCTAGTTTACCTAGCA-TCTGATG
1 AAAATTTTAAGCCTAGTTTACCTAGCACT-TGATG
* * * * *
9455606 GAAATTTTAAGCCCAGTTTATCTAACACCTGATG
1 AAAATTTTAAGCCTAGTTTACCTAGCACTTGATG
* * * * *
9455640 AAAATTTTAAACCCAGATTA-CTTGACACTTGATA
1 AAAATTTTAAGCCTAGTTTACCTAG-CACTTGATG
* * * * * * * *
9455674 AAAAATTTAAGCCCAATTTA-TTTGAACCCTGAAG
1 AAAATTTTAAGCCTAGTTTACCTAGCA-CTTGATG
*
9455708 AAAATTTTAAGCCTAGTTTACCTAGCACCTGATG
1 AAAATTTTAAGCCTAGTTTACCTAGCACTTGATG
* * * * *
9455742 AAGATTTTTAAAG-CTCAGTTTA-GTTG-GCTTCCAATG
1 AA-AATTTT-AAGCCT-AGTTTACCTAGCACTT--GATG
* * * *
9455778 AAAA-TTTAAGTCC-AATTTACTTGGTACTTGATG
1 AAAATTTTAAG-CCTAGTTTACCTAGCACTTGATG
* * * *
9455811 AAAATTTTAAGCCCAGTTTATCTGGCCCTTGATG
1 AAAATTTTAAGCCTAGTTTACCTAGCACTTGATG
* * * * * ** *
9455845 CAAATTTCATGCATAGTTTA-TTAGGCA-TCAAAG
1 AAAATTTTAAGCCTAGTTTACCTA-GCACTTGATG
* *
9455878 AAAGATTTTAAAGCCTAGTTTAGCT-G-ACTCTCAGTG
1 AAA-ATTTT-AAGCCTAGTTTACCTAGCACT-TGA-TG
* * *
9455914 AAAA-TTTAAGCTTAATTTACCT-GACACTCGATG
1 AAAATTTTAAGCCTAGTTTACCTAG-CACTTGATG
* * * * * *
9455947 AAGATTTTAAAGCTTAGCTTAGCTAGCTCAT-AGTG
1 AAAATTTT-AAGCCTAGTTTACCTAGCACTTGA-TG
*
9455982 AAAA-TGTAAGCCTAGTTTACCTAGCACTTGATG
1 AAAATTTTAAGCCTAGTTTACCTAGCACTTGATG
* *
9456015 AAGATTTTAAGCCCAGTTTA
1 AAAATTTTAAGCCTAGTTTA
9456035 TTAATTCACA
Statistics
Matches: 360, Mismatches: 105, Indels: 66
0.68 0.20 0.12
Matches are distributed among these distances:
33 68 0.19
34 198 0.55
35 73 0.20
36 21 0.06
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.33
Consensus pattern (34 bp):
AAAATTTTAAGCCTAGTTTACCTAGCACTTGATG
Found at i:9456206 original size:60 final size:60
Alignment explanation
Indices: 9456142--9456257 Score: 162
Period size: 60 Copynumber: 1.9 Consensus size: 60
9456132 ATGTCACATG
*
9456142 CATTCGTACTTGCATTCACAT-TTGCATCACAAAAAAAGACATTCACATTTGCATCACTCA
1 CATTCGTACTTACATTCACATGTT-CATCACAAAAAAAGACATTCACATTTGCATCACTCA
* ** * *
9456202 CATTCGTACTTACATTTACATGTTCATTTCAAAGAAAGACATTCGCATTTGCATCA
1 CATTCGTACTTACATTCACATGTTCATCACAAAAAAAGACATTCACATTTGCATCA
9456258 TTTGCATCTA
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
60 47 0.96
61 2 0.04
ACGTcount: A:0.34, C:0.24, G:0.09, T:0.33
Consensus pattern (60 bp):
CATTCGTACTTACATTCACATGTTCATCACAAAAAAAGACATTCACATTTGCATCACTCA
Found at i:9456294 original size:42 final size:42
Alignment explanation
Indices: 9456239--9456345 Score: 178
Period size: 42 Copynumber: 2.5 Consensus size: 42
9456229 TTCAAAGAAA
* *
9456239 GACATTCGCATTTGCATCATTTGCATCTACATCATAAAAAAG
1 GACATACGTATTTGCATCATTTGCATCTACATCATAAAAAAG
*
9456281 GACATACGTATTTGCATCATTTGCTTCTACATCATAAAAAAG
1 GACATACGTATTTGCATCATTTGCATCTACATCATAAAAAAG
*
9456323 GACATATGTATTTGCATCATTTG
1 GACATACGTATTTGCATCATTTG
9456346 TATTCGTACT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.35
Consensus pattern (42 bp):
GACATACGTATTTGCATCATTTGCATCTACATCATAAAAAAG
Found at i:9456380 original size:60 final size:60
Alignment explanation
Indices: 9456308--9456420 Score: 172
Period size: 60 Copynumber: 1.9 Consensus size: 60
9456298 CATTTGCTTC
* * * * *
9456308 TACATCATAAAAAAGGACATATGTATTTGCATCATTTGTATTCGTACTTGCATTCACATT
1 TACATCACAAAAAAGAACATATGCATTTGCATCACTTGTATTCGCACTTGCATTCACATT
*
9456368 TACATCACAAAAAAGAACATTTGCATTTGCATCACTTGTATTCGCACTTGCAT
1 TACATCACAAAAAAGAACATATGCATTTGCATCACTTGTATTCGCACTTGCAT
9456421 GTGCATCATG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 47 1.00
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (60 bp):
TACATCACAAAAAAGAACATATGCATTTGCATCACTTGTATTCGCACTTGCATTCACATT
Found at i:9456809 original size:11 final size:11
Alignment explanation
Indices: 9456793--9456848 Score: 58
Period size: 12 Copynumber: 4.8 Consensus size: 11
9456783 TGTAAATATT
9456793 AGAAAAAAAAA
1 AGAAAAAAAAA
9456804 AGAAAAGAAAAA
1 AGAAAA-AAAAA
***
9456816 AGGGGTAAAAAA
1 A-GAAAAAAAAA
9456828 AGAAAAAAAAA
1 AGAAAAAAAAA
9456839 GAGAAAAAAA
1 -AGAAAAAAA
9456849 GAGTTTATCA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
11 13 0.36
12 21 0.58
13 2 0.06
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (11 bp):
AGAAAAAAAAA
Found at i:9456851 original size:10 final size:10
Alignment explanation
Indices: 9456822--9456851 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
9456812 AAAAAGGGGT
*
9456822 AAAAAAAGAA
1 AAAAAAAGAG
9456832 AAAAAAAGAG
1 AAAAAAAGAG
9456842 AAAAAAAGAG
1 AAAAAAAGAG
9456852 TTTATCATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAG
Found at i:9457232 original size:22 final size:22
Alignment explanation
Indices: 9457204--9457251 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
9457194 GATTTGTAAA
*
9457204 ACCTTCAAGCATAATCTCTAAG
1 ACCTTCAAGCATAATCTCCAAG
*
9457226 ACCTTCAAGTATAATCTCCAAG
1 ACCTTCAAGCATAATCTCCAAG
9457248 ACCT
1 ACCT
9457252 CCAGGCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.29, G:0.08, T:0.27
Consensus pattern (22 bp):
ACCTTCAAGCATAATCTCCAAG
Found at i:9457340 original size:37 final size:36
Alignment explanation
Indices: 9457276--9457496 Score: 244
Period size: 37 Copynumber: 6.0 Consensus size: 36
9457266 TTAAAATTTC
*
9457276 AAAGTTTCAAAGTCTCTATTTGAGGGGAGCCATTTTT
1 AAAGTTTCAAAGCCTCTATTTG-GGGGAGCCATTTTT
* * *
9457313 AAAGTTTCAAAGCCTCTGTTTAGGGGGAGTCATTTTC
1 AAAGTTTCAAAGCCTCTATTT-GGGGGAGCCATTTTT
* *
9457350 AAAGCTTCAAAGCCTCTATTTGGGAGGAGCCATTTCT
1 AAAGTTTCAAAGCCTCTATTTGGG-GGAGCCATTTTT
* * *
9457387 AAGGTTTTAAAGCCTCTATTTGGGGGGAGCCTTTTTT
1 AAAGTTTCAAAGCCTCTATTT-GGGGGAGCCATTTTT
* * **
9457424 AAAATTTCAAAGCCTTTGCTTGAGGGGAGCCATTTTT
1 AAAGTTTCAAAGCCTCTATTTG-GGGGAGCCATTTTT
* * *
9457461 AAAGTTTCAAAGCCTTTATTTAGGGAGAGCAATTTT
1 AAAGTTTCAAAGCCTCTATTT-GGGGGAGCCATTTT
9457497 CAAATAAGAT
Statistics
Matches: 153, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
36 4 0.03
37 144 0.94
38 5 0.03
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (36 bp):
AAAGTTTCAAAGCCTCTATTTGGGGGAGCCATTTTT
Found at i:9457399 original size:74 final size:73
Alignment explanation
Indices: 9457272--9457500 Score: 280
Period size: 74 Copynumber: 3.1 Consensus size: 73
9457262 TATTTTAAAA
* *
9457272 TTTCAAAGTTTCAAAGTCTCTATTTGAGGGGAGCCATTTTTAAAGTTTCAAAGCCTCTGTTTAGG
1 TTTCAAAGTTTCAAAGCCTCTATTTGAGGGGAGCCATTTTTAAAGTTTCAAAGCCTCTATTTAGG
9457337 GGGAGTCAT
66 GGGAG-CAT
* * * * *
9457346 TTTCAAAGCTTCAAAGCCTCTATTTG-GGAGGAGCCATTTCTAAGGTTTTAAAGCCTCTATTTGG
1 TTTCAAAGTTTCAAAGCCTCTATTTGAGG-GGAGCCATTTTTAAAGTTTCAAAGCCTCTATTTAG
*
9457410 GGGGAGCCTT
65 GGGGAG-CAT
* * * ** *
9457420 TTTTAAAATTTCAAAGCCTTTGCTTGAGGGGAGCCATTTTTAAAGTTTCAAAGCCTTTATTTAGG
1 TTTCAAAGTTTCAAAGCCTCTATTTGAGGGGAGCCATTTTTAAAGTTTCAAAGCCTCTATTTAGG
*
9457485 GAGAGCAAT
66 GGGAGC-AT
9457494 TTTCAAA
1 TTTCAAA
9457501 TAAGATTTTC
Statistics
Matches: 129, Mismatches: 23, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
73 3 0.02
74 124 0.96
75 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.36
Consensus pattern (73 bp):
TTTCAAAGTTTCAAAGCCTCTATTTGAGGGGAGCCATTTTTAAAGTTTCAAAGCCTCTATTTAGG
GGGAGCAT
Found at i:9457425 original size:111 final size:110
Alignment explanation
Indices: 9457270--9457500 Score: 295
Period size: 111 Copynumber: 2.1 Consensus size: 110
9457260 AATATTTTAA
* * *
9457270 AATTTCAAAGTTTCAAAGTCTCTATTTGAGGGGAGCCATTTTTAAAGTTTCAAAGCCTCTG-TTT
1 AATTTCAAAGTTTCAAAGCCTCTATTTGAGGGGAGCCATTTTTAAAATTTCAAAGCCTCTGCTTG
*
9457334 AGGGGGAGTCATTTTCAAAGCTTCAAAGCCTCTATTT-GGGAGGAGC
66 A-GGGGAGCCATTTTCAAAGCTTCAAAGCCTCTATTTAGGGA-GAGC
* * * * * *
9457380 CATTTCTAAGGTTTTAAAGCCTCTATTTGGGGGGAGCCTTTTTTAAAATTTCAAAGCCTTTGCTT
1 AATTTC-AAAGTTTCAAAGCCTCTATTTGAGGGGAGCCATTTTTAAAATTTCAAAGCCTCTGCTT
* * *
9457445 GAGGGGAGCCATTTTTAAAGTTTCAAAGCCTTTATTTAGGGAGAGC
65 GAGGGGAGCCATTTTCAAAGCTTCAAAGCCTCTATTTAGGGAGAGC
9457491 AATTTTCAAA
1 AA-TTTCAAA
9457501 TAAGATTTTC
Statistics
Matches: 102, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
110 5 0.05
111 86 0.84
112 11 0.11
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (110 bp):
AATTTCAAAGTTTCAAAGCCTCTATTTGAGGGGAGCCATTTTTAAAATTTCAAAGCCTCTGCTTG
AGGGGAGCCATTTTCAAAGCTTCAAAGCCTCTATTTAGGGAGAGC
Found at i:9458233 original size:145 final size:144
Alignment explanation
Indices: 9458022--9458402 Score: 403
Period size: 145 Copynumber: 2.6 Consensus size: 144
9458012 AAGATACTCC
* * * ** * *
9458022 TATAAGGGATATTTTCATAATTTGACCTTTCTAAGCTTC-GACTTTCATGAAACTTTCTAGATCT
1 TATAAAGG-TATTTTTATAATTTGACCTTCCCGAGC-TCAGATTTTCATGAAACTTTTTAGATCT
* * * *
9458086 TAATTGTAAAAAATTTCATGATTTTTGGTGCATTTGAAATCACAATTGTACCCCAAGAAGTGTGA
64 TAATT-TATAATATTTCATGATTTTTGGTGCATTTGAAATCACAATAGTACCACAAGAAGTGTGA
9458151 -AATACCAAAAAACCCT-
128 GAATACCAAAAAA-CCTA
* * * ** *
9458167 TATAAGGGTATTTTTGTAATTT-AGCCTTCCTGAG-TTTGAATTTTCATGAAAACTTTTTAAATC
1 TATAAAGGTATTTTTATAATTTGA-CCTTCCCGAGCTCAG-ATTTTCATG-AAACTTTTTAGATC
* * * * * *
9458230 TTAATTACATAATATTTCATGATTCTTGGTGTATTTGAAATCATAGTAGTACCATAAGAAGTGTG
63 TTAATT-TATAATATTTCATGATTTTTGGTGCATTTGAAATCACAATAGTACCACAAGAAGTGTG
* *
9458295 AGATTACCAAAATACCTA
127 AGAATACCAAAAAACCTA
* *
9458313 TATAAAGGTATTTTTATAATTTGATCTTCCCGAGCTCAGATTTTCATGAAACTTTTTAGATCTCA
1 TATAAAGGTATTTTTATAATTTGACCTTCCCGAGCTCAGATTTTCATGAAACTTTTTAGATCTTA
9458378 ATATTATAATATTTCATGATTTTTG
66 AT-TTATAATATTTCATGATTTTTG
9458403 ATGTTTTAAA
Statistics
Matches: 196, Mismatches: 31, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
142 1 0.01
143 2 0.01
144 28 0.14
145 114 0.58
146 48 0.24
147 3 0.02
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40
Consensus pattern (144 bp):
TATAAAGGTATTTTTATAATTTGACCTTCCCGAGCTCAGATTTTCATGAAACTTTTTAGATCTTA
ATTTATAATATTTCATGATTTTTGGTGCATTTGAAATCACAATAGTACCACAAGAAGTGTGAGAA
TACCAAAAAACCTA
Found at i:9463215 original size:28 final size:29
Alignment explanation
Indices: 9463175--9463233 Score: 86
Period size: 30 Copynumber: 2.1 Consensus size: 29
9463165 TCAAGCAATC
9463175 TTTTTCAATTTTTT-TGT-TGTTTTTCTT
1 TTTTTCAATTTTTTGTGTGTGTTTTTCTT
*
9463202 TTTTTCAATTTTTTTGTGTGTTTTTTTCTT
1 TTTTTCAA-TTTTTTGTGTGTGTTTTTCTT
9463232 TT
1 TT
9463234 AAAGCACAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 8 0.29
28 6 0.21
29 3 0.11
30 11 0.39
ACGTcount: A:0.07, C:0.07, G:0.08, T:0.78
Consensus pattern (29 bp):
TTTTTCAATTTTTTGTGTGTGTTTTTCTT
Found at i:9463233 original size:27 final size:27
Alignment explanation
Indices: 9463176--9463233 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 27
9463166 CAAGCAATCT
*
9463176 TTTTCAATTTTTTTGTTGTTTTTCTTT
1 TTTTCAATTTTTTTGTTGTTTTTCTTC
9463203 TTTTCAATTTTTTTGTGTGTTTTT-TTC
1 TTTTCAATTTTTTTGT-TGTTTTTCTTC
9463230 TTTT
1 TTTT
9463234 AAAGCACAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 22 0.76
28 7 0.24
ACGTcount: A:0.07, C:0.07, G:0.09, T:0.78
Consensus pattern (27 bp):
TTTTCAATTTTTTTGTTGTTTTTCTTC
Found at i:9475708 original size:33 final size:33
Alignment explanation
Indices: 9475639--9475709 Score: 88
Period size: 33 Copynumber: 2.2 Consensus size: 33
9475629 AGACCTCTAA
** *
9475639 TTAGAGGAATCTTTCAAATACTATTGCCTATTG
1 TTAGAGGAATCTTTCAAATACTATCACCTATGG
* * *
9475672 TTAGTGGAATCTTTCAAATATTATCACCTCTGG
1 TTAGAGGAATCTTTCAAATACTATCACCTATGG
9475705 TTAGA
1 TTAGA
9475710 AAAAATTTTC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.39
Consensus pattern (33 bp):
TTAGAGGAATCTTTCAAATACTATCACCTATGG
Found at i:9476024 original size:32 final size:32
Alignment explanation
Indices: 9475957--9476055 Score: 108
Period size: 32 Copynumber: 3.0 Consensus size: 32
9475947 TTTTTCTTTC
* *
9475957 AAGTGTTATAACCTCTAGTTAGAAAAGTTTTTA
1 AAGTGATATAGCCTCTAGTTAG-AAAGTTTTTA
**
9475990 AAGTGATATAGCCTCTAGTTAGAGGGTTTTTA
1 AAGTGATATAGCCTCTAGTTAGAAAGTTTTTA
* * * *
9476022 AAGTCACATTGCCTCTAGTTAGAAGAATTTTTA
1 AAGTGATATAGCCTCTAGTTAGAA-AGTTTTTA
9476055 A
1 A
9476056 GATCAAGTTT
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
32 28 0.51
33 27 0.49
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.37
Consensus pattern (32 bp):
AAGTGATATAGCCTCTAGTTAGAAAGTTTTTA
Found at i:9478017 original size:53 final size:54
Alignment explanation
Indices: 9477954--9478086 Score: 200
Period size: 53 Copynumber: 2.5 Consensus size: 54
9477944 TTAAAGAAAG
*
9477954 AGTTGAAATATCAATTTTTCCTTAGAATGAAAATTTGAAAATATTT-AGAAAAA
1 AGTTGAAATATCAATTTTTCCTTAAAATGAAAATTTGAAAATATTTAAGAAAAA
*
9478007 AGTTGAAATATCAAATTTTCCTTAAAATGAAAATTTGAAAATATTTAAGAAAAA
1 AGTTGAAATATCAATTTTTCCTTAAAATGAAAATTTGAAAATATTTAAGAAAAA
* **
9478061 A-TTAAAATATCTGTTTTTCC-TAAAAT
1 AGTTGAAATATCAATTTTTCCTTAAAAT
9478087 TCTTTAAGAA
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
52 6 0.08
53 59 0.81
54 8 0.11
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (54 bp):
AGTTGAAATATCAATTTTTCCTTAAAATGAAAATTTGAAAATATTTAAGAAAAA
Found at i:9483163 original size:21 final size:21
Alignment explanation
Indices: 9483137--9483187 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
9483127 TTATGATTTT
9483137 AAAAAATAATAAAATAATT-CA
1 AAAAAATAATAAAA-AATTACA
* *
9483158 AAAAAATCATACAAAATTACA
1 AAAAAATAATAAAAAATTACA
*
9483179 ATAAAATAA
1 AAAAAATAA
9483188 AATTGTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 4 0.16
21 21 0.84
ACGTcount: A:0.71, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAAAAATAATAAAAAATTACA
Found at i:9489428 original size:7 final size:7
Alignment explanation
Indices: 9489416--9489442 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
9489406 ATTCTTATGA
9489416 GTTTAGG
1 GTTTAGG
9489423 GTTTAGG
1 GTTTAGG
9489430 GTTTAGG
1 GTTTAGG
9489437 GTTTAG
1 GTTTAG
9489443 AAATTATTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.44
Consensus pattern (7 bp):
GTTTAGG
Found at i:9489895 original size:30 final size:31
Alignment explanation
Indices: 9489859--9489918 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
9489849 TGTATTTTAA
*
9489859 TGGCATTTTT-AAAAGAAAATGCCACTAAAG
1 TGGCATTTTTGAAAAAAAAATGCCACTAAAG
*
9489889 TGGCATTTTTGAAAAAAAAATGCCATTAAA
1 TGGCATTTTTGAAAAAAAAATGCCACTAAA
9489919 AATTCCCCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 10 0.37
31 17 0.63
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.28
Consensus pattern (31 bp):
TGGCATTTTTGAAAAAAAAATGCCACTAAAG
Found at i:9495526 original size:13 final size:13
Alignment explanation
Indices: 9495508--9495537 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
9495498 CAAAGTATAT
9495508 ATATGTTCTTTAG
1 ATATGTTCTTTAG
*
9495521 ATATGTTCTTTAT
1 ATATGTTCTTTAG
9495534 ATAT
1 ATAT
9495538 AGTTGGTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.27, C:0.07, G:0.10, T:0.57
Consensus pattern (13 bp):
ATATGTTCTTTAG
Found at i:9497424 original size:162 final size:161
Alignment explanation
Indices: 9496721--9498762 Score: 1334
Period size: 162 Copynumber: 12.7 Consensus size: 161
9496711 ATTTTTTTTG
* * * * * * ** * *
9496721 TTTTAATAGTTTAAATAGCTTAAATACATTATATTAAACCT-ACCTGAATGATTGAACTTAGTTT
1 TTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTTC-GAATAATTGAACTTGGTTT
* ** ** * * * **
9496785 TCATGATTG--ATGTGTGAAAAAGTTATTATTTATGTCAGTATAACAC-TTGTTGTGCTATTAAA
65 TCACGATTGATATGTGTGAAAAAGTTATCGTTTATGTCTTTTTAGCACTTTTTTGTGCCGTTAAA
*
9496847 AGGCCAAAATGC-AATTT-TAATTTTATTATTCCA
130 AGGCCAAAATGCAAATTTGT-A-TTTATTATT-TA
* * * * * * * *
9496880 TTTTAACCATTTAGATAGCTTCAATAAATGATATTAAACTTGTTTGAATGATTGGATTTAGTTTG
1 TTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTTCGAATAATTGAACTTGGTTTT
* * * * **
9496945 CAC-ACTGATATGTGTGAATAAAGTCATCGTTTATGT-TAATTTAGGA-TTTTTTGTGATGTTAA
66 CACGATTGATATGTGTGAA-AAAGTTATCGTTTATGTCT-TTTTAGCACTTTTTTGTGCCGTTAA
* * * *
9497007 AGGGTCAAAATGCAAATTTGCATTTATTATTTTG
129 AAGGCCAAAATGCAAATTTGTATTTATTA-TTTA
* * * * *
9497041 TTTTACCAATTTAGATAGTTTCAATACATAATATTATACTTG-TCTGAATAATTGAACTTAGTTT
1 TTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTTC-GAATAATTGAACTTGGTTT
* * * * * * *
9497105 TCATGATTGATATGTGCGAAAAAGTTATCGTTTATATCTTTTTTAGGACTTTGTTATACCGTTAA
65 TCACGATTGATATGTGTGAAAAAGTTATCGTTTATGTC-TTTTTAGCACTTTTTTGTGCCGTTAA
* ** *
9497170 AAGGCCAAAATGTC-ATTTTGTAGCTA-TGTTTA
129 AAGGCCAAAATG-CAAATTTGTATTTATTATTTA
* * * * * *
9497202 -TTT-ACAATTTAGATAACTTAAATATATGATATTAAACTTTTTAGAATGATTGAACTTGGTTTT
1 TTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTTCGAATAATTGAACTTGGTTTT
* * * * * **
9497265 CACAATTGATATGTGTAAAAAAGTTACCATTTATGTCTGTTTAGCACTTTTTTGTGCTATTAAAA
66 CACGATTGATATGTGTGAAAAAGTTATCGTTTATGTCTTTTTAGCACTTTTTTGTGCCGTTAAAA
*
9497330 GGCCAAAATGCAAATTTATATTTATTATTCTA
131 GGCCAAAATGCAAATTTGTATTTATTATT-TA
* * * * * *
9497362 TTTTAATAATTTGGATAACTTCAATACATGATATTAAACTTATTCAAATAATTAAACTTGGTTTT
1 TTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTTCGAATAATTGAACTTGGTTTT
* * * * * *
9497427 CACGGTTGATATGTGTGAAAATGTTA-CTTTGTATGTCTTTTTAGGACTTTGTTATGCCGTTAAA
66 CACGATTGATATGTGTGAAAAAGTTATCGTT-TATGTCTTTTTAGCACTTTTTTGTGCCGTTAAA
** ** * * *
9497491 AGGTAAAAATATAAATTTGCAGTTGTATT-TATG
130 AGGCCAAAATGCAAATTTGTA-TT-TATTATTTA
* * * * * *
9497524 TTTTAACAGTTTAGAT-GCCTTAAATACATAATATTAAACTTCTTCAAATGATTGAACTTGGTTT
1 TTTTAACAATTTAGATAG-CTTCAATACATGATATTAAACTTGTTCGAATAATTGAACTTGGTTT
* * * * *
9497588 TCATGATTGAGAAT-TGTGAAAAAGTTACCATTTATGT-TTGTTTAGCATTTTTTTGTGCCGTTA
65 TCACGATTGA-TATGTGTGAAAAAGTTATCGTTTATGTCTT-TTTAGCACTTTTTTGTGCCGTTA
* * *
9497651 AAAGGCCAAAATGTAAATTTATGTTTATTATTT-
128 AAAGGCCAAAATGCAAATTTGTATTTATTATTTA
* * * * * *
9497684 TGTT-----GTCACA-AGCTTCAATACATGATATAAAACTTGTTTGAATAATTGAACTTGGTTTT
1 TTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTTCGAATAATTGAACTTGGTTTT
* * * * * * * * * *
9497743 CA-TAGTTGATATATGTGAAAATGTTAGCATGTATGTCTTTTTAGGACTTTGTTATGTCGTTAAA
66 CACGA-TTGATATGTGTGAAAAAGTTATCGTTTATGTCTTTTTAGCACTTTTTTGTGCCGTTAAA
* * *
9497807 AGG-AAAAAT--ATAATCTTGTAATGA-TATTTA
130 AGGCCAAAATGCA-AAT-TTGTATTTATTATTTA
* * * * * * *
9497837 TGTTTTAACAGTTTAGATAGCTTAAATATATGATATTAAACTTTTTCAAATGATTGAACTTCGTT
1 --TTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTTCGAATAATTGAACTTGGTT
* * * * * * *
9497902 TCCACAATTGATACGTGTGAAAAAGTTATTGTTTATGTCTATTTAACACTTTTTTATGCCGTTAA
64 TTCACGATTGATATGTGTGAAAAAGTTATCGTTTATGTCTTTTTAGCACTTTTTTGTGCCGTTAA
* * * *
9497967 AAGACCAAAATGCAAAATTGTGTTTATTATTTTG
129 AAGGCCAAAATGCAAATTTGTATTTATTA-TTTA
* * * * *
9498001 TTTTAATAGTTTAGATAGCTTTAATACATGATATTAAACTTGTTTGAATAATTGAACTTGGTTTC
1 TTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTTCGAATAATTGAACTTGGTTTT
* * * * * * * * ** **
9498066 CATGACTGATATATGTGAAAATGTTATTGTATATATCTTTTTAAG-ACTTTGTTACGTTGTTAAA
66 CACGATTGATATGTGTGAAAAAGTTATCGTTTATGTCTTTTT-AGCACTTTTTTGTGCCGTTAAA
** * * *
9498130 AGGTGAAATAT--AATTTTATAGTTA-TATTTA
130 AGGCCAAA-ATGCAAATTTGTATTTATTATTTA
* * * * * *
9498160 TGTTTTAATAGTTTAGATAGCTTAAATACATGATATTAAACTTTTTCGAATGATTGAACTTGGTA
1 --TTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTTCGAATAATTGAACTTGGTT
** * * * * *
9498225 CCCAAGATTGATAAGTGTGAAAAAGTTATTGTTTATGTCTATTTAGCAC-TTTTTGTGCCGCTAA
64 TTCACGATTGATATGTGTGAAAAAGTTATCGTTTATGTCTTTTTAGCACTTTTTTGTGCCGTTAA
* * *
9498289 AAGGCCAAAATGCAAATATGTGTTTATTATTCTG
129 AAGGCCAAAATGCAAATTTGTATTTATTATT-TA
* * *
9498323 TTTTAACAGTTTAGATAGCTTCAATATATGATATTAAACTTCTTCGAATAATTGAACTTGG-TTT
1 TTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTTCGAATAATTGAACTTGGTTTT
* * * * * * ***
9498387 CACGATAGATATGTATGAAAATGTTATCGTGTATGCCTTTTTAGAACTTGTTACAT--CGTTAAA
66 CACGATTGATATGTGTGAAAAAGTTATCGTTTATGTCTTTTTAGCACTT-TTTTGTGCCGTTAAA
* * * * * * *
9498450 GGGCAAAAATGTAATTTTATAGTTATT-TGTATG
130 AGGCCAAAATGCAAATTTGTATTTATTAT-T-TA
* * * * * * *
9498483 TTTTTACAATTTAGTTAGCTTCAAGACATGATATTAAACTT-ATCTAAATGATTGAACTTGATTT
1 TTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTTC-GAATAATTGAACTTGGTTT
* * * * * * *
9498547 TCATGATTGATATATGTGGAAAAAGGTAGCGTTTATGTCTTTTTTAG-ACTTTATTGTACCATT-
65 TCACGATTGATATGTGT-GAAAAAGTTATCGTTTATGTC-TTTTTAGCACTTTTTTGTGCCGTTA
** ** * *
9498610 AAAGGTAAAAATGC-AATTCTACAGTTA-TATTCATG
128 AAAGGCCAAAATGCAAATT-TGTATTTATTATT--TA
* * * * * *
9498645 TTTTAACAGTTTAGTTAG-TTTATATACATGATATTAAACTTGTCCGAATGATTGAACTTGATTT
1 TTTTAACAATTTAGATAGCTTCA-ATACATGATATTAAACTTGTTCGAATAATTGAACTTGGTTT
* * * * * * *
9498709 TCACAATTTGATATGTATGAATAAGTTA-AGATATATGTCTATTTAGGACTTTTT
65 TCACGA-TTGATATGTGTGAAAAAGTTATCG-TTTATGTCTTTTTAGCACTTTTT
9498763 ATAACGTTAA
Statistics
Matches: 1468, Mismatches: 339, Indels: 149
0.75 0.17 0.08
Matches are distributed among these distances:
151 1 0.00
152 8 0.01
153 13 0.01
154 89 0.06
155 9 0.01
157 1 0.00
158 42 0.03
159 140 0.10
160 160 0.11
161 423 0.29
162 507 0.35
163 66 0.04
164 9 0.01
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.43
Consensus pattern (161 bp):
TTTTAACAATTTAGATAGCTTCAATACATGATATTAAACTTGTTCGAATAATTGAACTTGGTTTT
CACGATTGATATGTGTGAAAAAGTTATCGTTTATGTCTTTTTAGCACTTTTTTGTGCCGTTAAAA
GGCCAAAATGCAAATTTGTATTTATTATTTA
Found at i:9498014 original size:477 final size:478
Alignment explanation
Indices: 9496834--9498612 Score: 1278
Period size: 477 Copynumber: 3.7 Consensus size: 478
9496824 ATAACACTTG
* * *
9496834 TTGTGCTATTAAAAGGCCAAAATGC-AATTT-TAATTTTATTATTCCATTTTAACCATTTAGATA
1 TTGTGCTATTAAAAGGCAAAAAT-CAAATTTATAA--TGATTATTCTATTTTAA-CATTTAGATA
* * * * *
9496897 GCTTCAATAAATGATATTAAACTTGTTT-GAATGATTGGATTTAGTTTGCACACTGATATGTGTG
62 GCTTCAATAAATGATATTAAACTT-TTTCAAATGATTGAACTTAGTTTCCACATTGATATGTGTG
* * * ** *
9496961 AATAAAGTCATCGTTTATGT-TAATTTAGGA-TTTTTTGTGATGTTAAAGGGTCAAAATGCAAAT
126 AA-AAAGTTATTGTTTATGTCT-ATTTAGGACTTTTTTATGCCGTTAAAAGGTCAAAATGCAAAT
* * * * * *
9497024 TTGCA-TTTATTATTTTGTTTTACCAATTTAGATAGTTTCAATACATAATATTATACTTGTCTGA
189 TTG-AGTTTATTATTTTGTTTTAACAGTTTAGATAGCTTAAATACATAATATTAAACTTTTC-GA
* * * * * *
9497088 ATAATTGAACTTAGTTTTCATGATTGATATGTGCGAAAAAGTTATCGTTTATATCTTTTTTAGGA
252 ATAATTGAACTTGGTTTTCATGATTGAAATGTGCGAAAAAGTTACCATTTATATCTTGTTTAGCA
* * * *
9497153 CTTTGTTATACCGTTAAAAGGCCAAAATGTCATTTTGTAGCTATGTTTATTTACAATTTAGATAA
317 CTTTGTTATACCGTTAAAAGGCCAAAATGTAAATTTATAGCTATGTTTATTTA-AATTTACATAA
* * * *
9497218 CTTAAATATATGATATTAAACTTTTTAGAATGATTGAACTTGGTTTTCACAATTGATATGTGTAA
381 CTTAAATACATGATATAAAACTTTTTAGAATAATTGAACTTGGTTTTCACAATTGATATATGTAA
*
9497283 AAAAGTTACCATTTATGTCTGTTTAGCACTTTT
446 AAAAGTTACCATGTATGTCTGTTTAGCACTTTT
* * * * * *
9497316 TTGTGCTATTAAAAGGCCAAAATGCAAATTTATATTTATTATTCTATTTTAATAATTTGGATAAC
1 TTGTGCTATTAAAAGGCAAAAAT-CAAATTTATAATGATTATTCTATTTTAA-CATTTAGATAGC
* * * * * * *
9497381 TTCAATACATGATATTAAACTTATTCAAATAATTAAACTTGGTTTTCACGGTTGATATGTGTGAA
64 TTCAATAAATGATATTAAACTTTTTCAAATGATTGAACTTAGTTTCCAC-ATTGATATGTGTGAA
* * * * * **
9497446 AATGTTACTT-TGTATGTCTTTTTAGGACTTTGTTATGCCGTTAAAAGGTAAAAATATAAATTTG
128 AAAGTTA-TTGTTTATGTCTATTTAGGACTTTTTTATGCCGTTAAAAGGTCAAAATGCAAATTTG
* *
9497510 CAGTTGTA-T-TTATGTTTTAACAGTTTAGAT-GCCTTAAATACATAATATTAAACTTCTTCAAA
192 -AGTT-TATTATTTTGTTTTAACAGTTTAGATAG-CTTAAATACATAATATTAAACTT-TTCGAA
* * *
9497572 TGATTGAACTTGGTTTTCATGATTGAGAAT-TGTGAAAAAGTTACCATTTATGT-TTGTTTAGCA
253 TAATTGAACTTGGTTTTCATGATTGA-AATGTGCGAAAAAGTTACCATTTATATCTTGTTTAGCA
* * * * **
9497635 TTTTTTTGTGCCGTTAAAAGGCCAAAATGTAAATTTAT-G-T-T-TATTATTT-TGTTGTCACA-
317 CTTTGTTATACCGTTAAAAGGCCAAAATGTAAATTTATAGCTATGT-TTATTTAAATT-T-ACAT
* * * *
9497694 AGCTTCAATACATGATATAAAACTTGTTT-GAATAATTGAACTTGGTTTTCATAGTTGATATATG
379 AACTTAAATACATGATATAAAACTT-TTTAGAATAATTGAACTTGGTTTTCACAATTGATATATG
* * * * *
9497758 TGAAAATGTTAGCATGTATGTCTTTTTAGGACTTTGT
443 TAAAAAAGTTACCATGTATGTCTGTTTAGCACTTT-T
* *
9497795 TATGT-C-GTTAAAAGG-AAAAAT-ATAATCTTGTAATGA-TATT-TATGTTTTAACAGTTTAGA
1 T-TGTGCTATTAAAAGGCAAAAATCA-AAT-TTATAATGATTATTCTA--TTTTAACA-TTTAGA
* * * *
9497854 TAGCTTAAATATATGATATTAAACTTTTTCAAATGATTGAACTTCGTTTCCACAATTGATACGTG
60 TAGCTTCAATAAATGATATTAAACTTTTTCAAATGATTGAACTTAGTTTCCAC-ATTGATATGTG
** ** *
9497919 TGAAAAAGTTATTGTTTATGTCTATTTAACACTTTTTTATGCCGTTAAAAGACCAAAATGCAAAA
124 TGAAAAAGTTATTGTTTATGTCTATTTAGGACTTTTTTATGCCGTTAAAAGGTCAAAATGCAAAT
* * * * *
9497984 TTGTGTTTATTATTTTGTTTTAATAGTTTAGATAGCTTTAATACATGATATTAAACTTGTTTGAA
189 TTGAGTTTATTATTTTGTTTTAACAGTTTAGATAGCTTAAATACATAATATTAAACTT-TTCGAA
* * * * * * *** *
9498049 TAATTGAACTTGGTTTCCATGACTGATATATGTGAAAATGTTATTGTATATATCTT-TTTAAG-A
253 TAATTGAACTTGGTTTTCATGATTGAAATGTGCGAAAAAGTTACCATTTATATCTTGTTT-AGCA
**** ** * * * * *
9498112 CTTTGTTACGTTGTTAAAAGG-TGAAATATAATTTTATAGTTATATTTATGTTTTAATAGTTTAG
317 CTTTGTTATACCGTTAAAAGGCCAAAATGTAAATTTATAGCTATGTTTA---TTTAA-A-TTTAC
* * * * ***
9498176 ATAGCTTAAATACATGATATTAAACTTTTTCGAATGATTGAACTTGGTACCCA-AGATTGATA-A
377 ATAACTTAAATACATGATATAAAACTTTTTAGAATAATTGAACTTGGTTTTCACA-ATTGATATA
* *** * *
9498239 GTGTGAAAAAGTTATTGTTTATGTCTATTTAGCAC-TTT
441 -TGTAAAAAAGTTACCATGTATGTCTGTTTAGCACTTTT
*** * * * ** * *
9498277 TTGTGCCGCTAAAAGGCCAAAATGCAAATATGTGTTTATTATTCTGTTTTAACAGTTTAGATAGC
1 TTGTGCTATTAAAAGGCAAAAAT-CAAATTTATAATGATTATTCTATTTTAACA-TTTAGATAGC
* * * * * * *
9498342 TTCAATATATGATATTAAACTTCTTCGAATAATTGAACTTGGTTT-CACGATAGATATGTATGAA
64 TTCAATAAATGATATTAAACTTTTTCAAATGATTGAACTTAGTTTCCAC-ATTGATATGTGTGAA
* * * * * * ** * * *
9498406 AATGTTATCGTGTATGCCTTTTTAGAACTTGTTACAT--CGTT-AAAGGGCAAAAATGTAATTTT
128 AAAGTTATTGTTTATGTCTATTTAGGACTT-TTTTATGCCGTTAAAAGGTC-AAAATGCAAATTT
* * * * * * * * * *
9498468 ATAG-TTATT-TGTATGTTTTTACAATTTAGTTAGCTTCAAGACATGATATTAAACTTATCTAAA
191 -GAGTTTATTAT-TTTGTTTTAACAGTTTAGATAGCTTAAATACATAATATTAAACTTTTC-GAA
* * * * * * *
9498531 TGATTGAACTTGATTTTCATGATTGATATATGTG-GAAAAAGGTAGCGTTTATGTCTTTTTTAG-
253 TAATTGAACTTGGTTTTCATGATTGA-A-ATGTGCGAAAAAGTTACCATTTATATCTTGTTTAGC
* * *
9498594 ACTTTATTGTACCATTAAA
316 ACTTTGTTATACCGTTAAA
9498613 GGTAAAAATG
Statistics
Matches: 1031, Mismatches: 207, Indels: 117
0.76 0.15 0.09
Matches are distributed among these distances:
475 5 0.00
476 28 0.03
477 235 0.23
478 97 0.09
479 19 0.02
480 5 0.00
481 13 0.01
482 232 0.23
483 220 0.21
484 164 0.16
485 11 0.01
486 2 0.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.43
Consensus pattern (478 bp):
TTGTGCTATTAAAAGGCAAAAATCAAATTTATAATGATTATTCTATTTTAACATTTAGATAGCTT
CAATAAATGATATTAAACTTTTTCAAATGATTGAACTTAGTTTCCACATTGATATGTGTGAAAAA
GTTATTGTTTATGTCTATTTAGGACTTTTTTATGCCGTTAAAAGGTCAAAATGCAAATTTGAGTT
TATTATTTTGTTTTAACAGTTTAGATAGCTTAAATACATAATATTAAACTTTTCGAATAATTGAA
CTTGGTTTTCATGATTGAAATGTGCGAAAAAGTTACCATTTATATCTTGTTTAGCACTTTGTTAT
ACCGTTAAAAGGCCAAAATGTAAATTTATAGCTATGTTTATTTAAATTTACATAACTTAAATACA
TGATATAAAACTTTTTAGAATAATTGAACTTGGTTTTCACAATTGATATATGTAAAAAAGTTACC
ATGTATGTCTGTTTAGCACTTTT
Found at i:9498175 original size:323 final size:323
Alignment explanation
Indices: 9496716--9498783 Score: 1803
Period size: 321 Copynumber: 6.4 Consensus size: 323
9496706 ATGCAATTTT
* * * * *** * *
9496716 TTTTGTTTTAATAGTTTAAATAGCTTAAATACATTATATTAAACCTACCTGAATGATTGAACTTA
1 TTTTGTTTTAATAGTTTAGATAGCTTCAATACATGATATTAAACTTGTTTGAATAATTGAACTTG
* ** * ** * ** * *
9496781 GTTTTCATGATTG--ATGTGTGAAAAAGTTATTATTTATGTCAGTATAACAC-TTGTTGTG-CTA
66 GTTTTCATGATTGATATGTGTGAAAATGTTATCGTGTATGTCTTTTTAGGACTTTGTTATGTC-G
* ** * * * *
9496842 TTAAAAGGCCAAAATGCAA-TTT-TAATTTTA-TTATTCCATTTTAACCA-TTTAGATAGCTTCA
130 TTAAAAGG-AAAAATATAATTTTGTAGTTATATTTA-T--GTTTTAA-CAGTTTAGATAGCTTAA
* * * * * * * *
9496903 ATAAATGATATTAAACTTGTTT-GAATGATTGGATTTAGTTTGCAC-ACTGATATGTGTGAATAA
190 ATACATGATATTAAACTT-TTTCAAATGATTGAACTTGGTTTCCACAATTGATAAGTGTGAA-AA
* * ** * * **
9496966 AGTCATCGTTTATGT-TAATTTAGGA-TTTTTTGTGATGTTAAAGGGTCAAAATGCAAATTTGCA
253 AGTTATCGTTTATGTCT-ATTTAGCACTTTTTTGTGCCGTTAAAAGGCCAAAATGCAAATTTGTG
9497029 TTTATTA
317 TTTATTA
** * * * * * *
9497036 TTTTGTTTTACCAATTTAGATAGTTTCAATACATAATATTATACTTGTCTGAATAATTGAACTTA
1 TTTTGTTTTAATAGTTTAGATAGCTTCAATACATGATATTAAACTTGTTTGAATAATTGAACTTG
* * * * **
9497101 GTTTTCATGATTGATATGTGCGAAAAAGTTATCGTTTATATCTTTTTTAGGACTTTGTTATACCG
66 GTTTTCATGATTGATATGTGTGAAAATGTTATCGTGTATGTC-TTTTTAGGACTTTGTTATGTCG
* * * * * * * *
9497166 TTAAAAGGCCAAAATGTCATTTTGTAGCTATGTTTA---TTT-ACAATTTAGATAACTTAAATAT
130 TTAAAAGG-AAAAATATAATTTTGTAGTTATATTTATGTTTTAACAGTTTAGATAGCTTAAATAC
* * *
9497227 ATGATATTAAACTTTTT-AGAATGATTGAACTTGGTTTTCACAATTGATATGTGTAAAAAAGTTA
194 ATGATATTAAACTTTTTCA-AATGATTGAACTTGGTTTCCACAATTGATAAGTGTGAAAAAGTTA
* * * ** * *
9497291 CCATTTATGTCTGTTTAGCACTTTTTTGTGCTATTAAAAGGCCAAAATGCAAATTTATATTTATT
258 TCGTTTATGTCTATTTAGCACTTTTTTGTGCCGTTAAAAGGCCAAAATGCAAATTTGTGTTTATT
9497356 A
323 A
* * * * * * ** *
9497357 TTCTATTTTAATAATTTGGATAACTTCAATACATGATATTAAACTTATTCAAATAATTAAACTTG
1 TTTTGTTTTAATAGTTTAGATAGCTTCAATACATGATATTAAACTTGTTTGAATAATTGAACTTG
* * * *
9497422 GTTTTCACGGTTGATATGTGTGAAAATGTTA-CTTTGTATGTCTTTTTAGGACTTTGTTATGCCG
66 GTTTTCATGATTGATATGTGTGAAAATGTTATC-GTGTATGTCTTTTTAGGACTTTGTTATGTCG
* * *
9497486 TTAAAAGGTAAAAATATAAATTTGCAGTTGTATTTATGTTTTAACAGTTTAGAT-GCCTTAAATA
130 TTAAAAGG-AAAAATATAATTTTGTAGTTATATTTATGTTTTAACAGTTTAGATAG-CTTAAATA
* * * ** * *
9497550 CATAATATTAAACTTCTTCAAATGATTGAACTTGGTTTTCATGATTGAGAATTGTGAAAAAGTTA
193 CATGATATTAAACTTTTTCAAATGATTGAACTTGGTTTCCACAATTGATAAGTGTGAAAAAGTTA
* * * * * * *
9497615 CCATTTATGTTTGTTTAGCATTTTTTTGTGCCGTTAAAAGGCCAAAATGTAAATTTATGTTTATT
258 TCGTTTATGTCTATTTAGCACTTTTTTGTGCCGTTAAAAGGCCAAAATGCAAATTTGTGTTTATT
9497680 A
323 A
* * *
9497681 TTTTG---T--T-G-TCACA-AGCTTCAATACATGATATAAAACTTGTTTGAATAATTGAACTTG
1 TTTTGTTTTAATAGTTTAGATAGCTTCAATACATGATATTAAACTTGTTTGAATAATTGAACTTG
* * *
9497738 GTTTTCAT-AGTTGATATATGTGAAAATGTTAGCATGTATGTCTTTTTAGGACTTTGTTATGTCG
66 GTTTTCATGA-TTGATATGTGTGAAAATGTTATCGTGTATGTCTTTTTAGGACTTTGTTATGTCG
* * * *
9497802 TTAAAAGGAAAAATATAATCTTGTAATGATATTTATGTTTTAACAGTTTAGATAGCTTAAATATA
130 TTAAAAGGAAAAATATAATTTTGTAGTTATATTTATGTTTTAACAGTTTAGATAGCTTAAATACA
* * *
9497867 TGATATTAAACTTTTTCAAATGATTGAACTTCGTTTCCACAATTGATACGTGTGAAAAAGTTATT
195 TGATATTAAACTTTTTCAAATGATTGAACTTGGTTTCCACAATTGATAAGTGTGAAAAAGTTATC
* * * *
9497932 GTTTATGTCTATTTAACACTTTTTTATGCCGTTAAAAGACCAAAATGCAAAATTGTGTTTATTA
260 GTTTATGTCTATTTAGCACTTTTTTGTGCCGTTAAAAGGCCAAAATGCAAATTTGTGTTTATTA
*
9497996 TTTTGTTTTAATAGTTTAGATAGCTTTAATACATGATATTAAACTTGTTTGAATAATTGAACTTG
1 TTTTGTTTTAATAGTTTAGATAGCTTCAATACATGATATTAAACTTGTTTGAATAATTGAACTTG
* * * * * * * * *
9498061 GTTTCCATGACTGATATATGTGAAAATGTTATTGTATATATCTTTTTAAGACTTTGTTACGTTGT
66 GTTTTCATGATTGATATGTGTGAAAATGTTATCGTGTATGTCTTTTTAGGACTTTGTTATGTCGT
** * *
9498126 TAAAAGGTGAAATATAATTTTATAGTTATATTTATGTTTTAATAGTTTAGATAGCTTAAATACAT
131 TAAAAGGAAAAATATAATTTTGTAGTTATATTTATGTTTTAACAGTTTAGATAGCTTAAATACAT
* ** *
9498191 GATATTAAACTTTTTCGAATGATTGAACTTGGTACCCA-AGATTGATAAGTGTGAAAAAGTTATT
196 GATATTAAACTTTTTCAAATGATTGAACTTGGTTTCCACA-ATTGATAAGTGTGAAAAAGTTATC
* *
9498255 GTTTATGTCTATTTAGCAC-TTTTTGTGCCGCTAAAAGGCCAAAATGCAAATATGTGTTTATTA
260 GTTTATGTCTATTTAGCACTTTTTTGTGCCGTTAAAAGGCCAAAATGCAAATTTGTGTTTATTA
* * * * *
9498318 TTCTGTTTTAACAGTTTAGATAGCTTCAATATATGATATTAAACTTCTTCGAATAATTGAACTTG
1 TTTTGTTTTAATAGTTTAGATAGCTTCAATACATGATATTAAACTTGTTTGAATAATTGAACTTG
* * * * * **
9498383 G-TTTCACGATAGATATGTATGAAAATGTTATCGTGTATGCCTTTTTAGAAC-TTGTTACATCGT
66 GTTTTCATGATTGATATGTGTGAAAATGTTATCGTGTATGTCTTTTTAGGACTTTGTTATGTCGT
* * * * * * * *
9498446 TAAAGGGCAAAAATGTAATTTTATAGTTAT-TTGTATGTTTTTACAATTTAGTTAGCTTCAAGAC
131 TAAAAGG-AAAAATATAATTTTGTAGTTATATT-TATGTTTTAACAGTTTAGATAGCTTAAATAC
* * * ** *
9498510 ATGATATTAAAC-TTATCTAAATGATTGAACTTGATTTTCATGATTGATATA-TGTGGAAAAAGG
194 ATGATATTAAACTTTTTC-AAATGATTGAACTTGGTTTCCACAATTGATA-AGTGT-GAAAAAGT
* * * * * ** **
9498573 TAGCGTTTATGTCTTTTTTAG-ACTTTATTGTACCATT-AAAGGTAAAAATGC-AATTCTACAG-
256 TATCGTTTATGTC-TATTTAGCACTTTTTTGTGCCGTTAAAAGGCCAAAATGCAAATT-T-GTGT
9498634 TTA-TA
318 TTATTA
* * * * ** *
9498639 TTCATGTTTTAACAGTTTAGTTAG-TTTATATACATGATATTAAACTTGTCCGAATGATTGAACT
1 TT-TTGTTTTAATAGTTTAGATAGCTTCA-ATACATGATATTAAACTTGTTTGAATAATTGAACT
* ** * * * *
9498703 TGATTTTCACAATTTGATATGTATGAATAA-GTTA-AGATATATGTCTATTTAGGACTTT-TTAT
64 TGGTTTTCATGA-TTGATATGTGTGAA-AATGTTATCG-TGTATGTCTTTTTAGGACTTTGTTAT
** *
9498765 AACGTTAACAAGTAAAAAT
126 GTCGTTAA-AAGGAAAAAT
9498784 GCAAATTTAC
Statistics
Matches: 1450, Mismatches: 247, Indels: 98
0.81 0.14 0.05
Matches are distributed among these distances:
315 161 0.11
316 103 0.07
317 3 0.00
318 1 0.00
319 6 0.00
320 206 0.14
321 272 0.19
322 215 0.15
323 259 0.18
324 206 0.14
325 11 0.01
326 4 0.00
327 3 0.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.43
Consensus pattern (323 bp):
TTTTGTTTTAATAGTTTAGATAGCTTCAATACATGATATTAAACTTGTTTGAATAATTGAACTTG
GTTTTCATGATTGATATGTGTGAAAATGTTATCGTGTATGTCTTTTTAGGACTTTGTTATGTCGT
TAAAAGGAAAAATATAATTTTGTAGTTATATTTATGTTTTAACAGTTTAGATAGCTTAAATACAT
GATATTAAACTTTTTCAAATGATTGAACTTGGTTTCCACAATTGATAAGTGTGAAAAAGTTATCG
TTTATGTCTATTTAGCACTTTTTTGTGCCGTTAAAAGGCCAAAATGCAAATTTGTGTTTATTA
Found at i:9498815 original size:162 final size:162
Alignment explanation
Indices: 9498508--9498843 Score: 353
Period size: 162 Copynumber: 2.1 Consensus size: 162
9498498 TAGCTTCAAG
* ** *
9498508 ACATGATATTAAACTTATCTAAATGATTGAACTTGATTTTCATGATTGATATATGTGGAAAAAGG
1 ACATGATATTAAACTTATCCAAATGATTGAACTTGATTTTCACAATTGATATATATGGAAAAAGG
* * * * * * *
9498573 TAGCGTTTATGTCTTTTTTAGACTTTATTGTACCATTAAAGGTAAAAATGCAATTCTACAGTTAT
66 TAGCATATATGTCTTATTTAGACTTTATTATAACATTAAAAGTAAAAATGCAATTCTACAATTAT
* * *
9498638 ATTCATGTTTTAACAGTTTAGTTAGTTTATA-T
131 ATTCATG-TTTAACAGTTTAGATAGCTCATATT
* * * *
9498670 ACATGATATTAAACTTGTCCGAATGATTGAACTTGATTTTCACAATTTGATATGTAT-GAATAAG
1 ACATGATATTAAACTTATCCAAATGATTGAACTTGATTTTCACAA-TTGATATATATGGAAAAAG
* *
9498734 TTAAG-ATATATGTC-TATTTAGGACTTT-TTATAACGTTAACAAGTAAAAATGCAAATT-TACA
65 GT-AGCATATATGTCTTATTTA-GACTTTATTATAACATTAA-AAGTAAAAATGC-AATTCTACA
*
9498795 ATTATTGTTCTATG-TTAACAGTTTAGATAGCTCATATT
126 ATTA-TATTC-ATGTTTAACAGTTTAGATAGCTCATATT
*
9498833 ATATGATATTA
1 ACATGATATTA
9498844 CATGTGTCTA
Statistics
Matches: 144, Mismatches: 22, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
161 14 0.10
162 97 0.67
163 30 0.21
164 3 0.02
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.41
Consensus pattern (162 bp):
ACATGATATTAAACTTATCCAAATGATTGAACTTGATTTTCACAATTGATATATATGGAAAAAGG
TAGCATATATGTCTTATTTAGACTTTATTATAACATTAAAAGTAAAAATGCAATTCTACAATTAT
ATTCATGTTTAACAGTTTAGATAGCTCATATT
Found at i:9510212 original size:16 final size:16
Alignment explanation
Indices: 9510152--9510208 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
9510142 TATTCACAAT
9510152 TAATTAAATTCATAAA
1 TAATTAAATTCATAAA
* *
9510168 TACATGAAA-TCATGAA
1 TA-ATTAAATTCATAAA
*
9510184 T-ATTAAATTTATAAA
1 TAATTAAATTCATAAA
9510199 TAATTAAATT
1 TAATTAAATT
9510209 TATATAATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
14 5 0.15
15 6 0.18
16 17 0.52
17 5 0.15
ACGTcount: A:0.53, C:0.05, G:0.04, T:0.39
Consensus pattern (16 bp):
TAATTAAATTCATAAA
Found at i:9510893 original size:19 final size:20
Alignment explanation
Indices: 9510856--9510899 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
9510846 TCTAATTGAA
* *
9510856 TTATATGTTTTTATTAATTT
1 TTATATATTTTTATAAATTT
9510876 TTATATATTTTTA-AAATTT
1 TTATATATTTTTATAAATTT
9510895 TTATA
1 TTATA
9510900 AAACAAGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (20 bp):
TTATATATTTTTATAAATTT
Found at i:9511332 original size:30 final size:30
Alignment explanation
Indices: 9511298--9511377 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 30
9511288 GTTCCAACCC
* * *
9511298 TTTAATTTATGTCTAAATATATTC-TTAACT
1 TTTAATTTATATCTAAATA-AGTCTTTAACA
* *
9511328 TTTAATTTGTATTTAAATAAGTCTTTAACA
1 TTTAATTTATATCTAAATAAGTCTTTAACA
9511358 TTTAATTTATA-CTTAAATAA
1 TTTAATTTATATC-TAAATAA
9511378 ACCTTTAATA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
29 3 0.07
30 38 0.93
ACGTcount: A:0.38, C:0.07, G:0.04, T:0.51
Consensus pattern (30 bp):
TTTAATTTATATCTAAATAAGTCTTTAACA
Found at i:9511384 original size:30 final size:30
Alignment explanation
Indices: 9511322--9511385 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
9511312 AAATATATTC
* * * **
9511322 TTAACTTTTAATTTGTATTTAAATAAGTCT
1 TTAACATTTAATTTATACTTAAATAAACCT
9511352 TTAACATTTAATTTATACTTAAATAAACCT
1 TTAACATTTAATTTATACTTAAATAAACCT
9511382 TTAA
1 TTAA
9511386 TATAAATTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.39, C:0.09, G:0.03, T:0.48
Consensus pattern (30 bp):
TTAACATTTAATTTATACTTAAATAAACCT
Found at i:9514101 original size:12 final size:11
Alignment explanation
Indices: 9514084--9514122 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
9514074 TGTCTTCTTT
9514084 TTTTTTCCTTC
1 TTTTTTCCTTC
*
9514095 ATTTTTTCATTC
1 -TTTTTTCCTTC
*
9514107 TTTTTTTCTTC
1 TTTTTTCCTTC
9514118 TTTTT
1 TTTTT
9514123 CTTTTTTTCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTTCCTTC
Found at i:9514153 original size:8 final size:8
Alignment explanation
Indices: 9514140--9514175 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
9514130 TCCTCATCAT
9514140 TTTTCTCC
1 TTTTCTCC
9514148 TTTTCT-C
1 TTTTCTCC
9514155 -TTTCTCC
1 TTTTCTCC
9514162 TTTTCT-C
1 TTTTCTCC
9514169 TTTTCTC
1 TTTTCTC
9514176 AATTGCATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
6 5 0.20
7 9 0.36
8 11 0.44
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (8 bp):
TTTTCTCC
Found at i:9514158 original size:14 final size:14
Alignment explanation
Indices: 9514141--9514171 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
9514131 CCTCATCATT
9514141 TTTCTCCTTTTCTC
1 TTTCTCCTTTTCTC
9514155 TTTCTCCTTTTCTC
1 TTTCTCCTTTTCTC
9514169 TTT
1 TTT
9514172 TCTCAATTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTCTCCTTTTCTC
Found at i:9515684 original size:22 final size:22
Alignment explanation
Indices: 9515659--9515709 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
9515649 GTTTTACAAG
9515659 TTATGCCCGGAA-GTCGTAAAGA
1 TTATGCCC-GAAGGTCGTAAAGA
* * *
9515681 TTATACCCGAAGGTCTTAAGGA
1 TTATGCCCGAAGGTCGTAAAGA
9515703 TTATGCC
1 TTATGCC
9515710 TAGAGGTCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (22 bp):
TTATGCCCGAAGGTCGTAAAGA
Found at i:9515979 original size:33 final size:33
Alignment explanation
Indices: 9515927--9516006 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
9515917 TTGTGTCAGT
* *
9515927 TAAACTGAGTTTAAATATCATCTAGGTACCAGC
1 TAAACTAAGCTTAAATATCATCTAGGTACCAGC
* * * *
9515960 TAAATTAGGCTTAAATATCATCTAGGTGCCATC
1 TAAACTAAGCTTAAATATCATCTAGGTACCAGC
9515993 TAAACTAAGCTTAA
1 TAAACTAAGCTTAA
9516007 TTTGCCAGCT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (33 bp):
TAAACTAAGCTTAAATATCATCTAGGTACCAGC
Found at i:9516039 original size:23 final size:23
Alignment explanation
Indices: 9515985--9516042 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
9515975 TATCATCTAG
* *
9515985 GTGCCATCTAAACTAAGCTTAAT
1 GTGCCAGCTAAACTAAGCTTAAA
* *
9516008 TTGCCAGCTAAACTGAGCTTAAA
1 GTGCCAGCTAAACTAAGCTTAAA
*
9516031 GTGCTAGCTAAA
1 GTGCCAGCTAAA
9516043 TTGGGATTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (23 bp):
GTGCCAGCTAAACTAAGCTTAAA
Found at i:9516073 original size:33 final size:33
Alignment explanation
Indices: 9516031--9516107 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
9516021 TGAGCTTAAA
** * *
9516031 GTGCTAGCTAAATTGGGATTAAATATCATCTGG
1 GTGCTAGCTAAACAGAGATTAAATATCATATGG
*
9516064 GTGCTAGCTAAACAGAGCTTAAATATCATATGG
1 GTGCTAGCTAAACAGAGATTAAATATCATATGG
*
9516097 GTGCCAGCTAA
1 GTGCTAGCTAA
9516108 TGGGCTTAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (33 bp):
GTGCTAGCTAAACAGAGATTAAATATCATATGG
Found at i:9516514 original size:41 final size:41
Alignment explanation
Indices: 9516469--9516549 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 41
9516459 ATGATGTAGA
* *
9516469 TGATGTAAATGCAAATGTCTTTCTCATGATACAGATGCAAG
1 TGATGCAAATACAAATGTCTTTCTCATGATACAGATGCAAG
* * *
9516510 TGATGCAACTACAAATGTCTTTTTCATGATATAGATGCAA
1 TGATGCAAATACAAATGTCTTTCTCATGATACAGATGCAA
9516550 ATGCGAATGT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (41 bp):
TGATGCAAATACAAATGTCTTTCTCATGATACAGATGCAAG
Found at i:9516548 original size:32 final size:32
Alignment explanation
Indices: 9516511--9516571 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
9516501 AGATGCAAGT
* *
9516511 GATGCAACTACAAATGTCTTTTTCATGATATA
1 GATGCAAATACAAATGTCTTTCTCATGATATA
* *
9516543 GATGCAAATGCGAATGTCTTTCTCATGAT
1 GATGCAAATACAAATGTCTTTCTCATGAT
9516572 GCACAATTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (32 bp):
GATGCAAATACAAATGTCTTTCTCATGATATA
Found at i:9516751 original size:185 final size:186
Alignment explanation
Indices: 9516408--9516801 Score: 456
Period size: 185 Copynumber: 2.1 Consensus size: 186
9516398 ACAGATGCCA
* * *
9516408 TGATGCAAATGTAAATGTCTTTCTTATGATGCAAATGCGAATACCTTAGTTATGATGTAGATGAT
1 TGATGCAAATGCAAATGTCTTTCTTATAATGCAAATGCGAATACCTTAGTTATGATGCAGATGAT
* * * * *
9516473 GTAAATGCAAATGTCTTTCTCATGATACAGATGCAAGTGATGCAACTACAAATGTCTTTTTCATG
66 GTAAATACAAA-GTATTTCTCATGATACAAATGCAAGTAATGCAACTACAAATGCCTTTTTCATG
**
9516538 ATATAGATGCAAATGCGAATGTCTTTCTCATGATGCACAATTGAATACGAATGCAAG
130 ATATAGATGCAAATGAAAATGTCTTTCTCATGATGCACAATTGAATACGAATGCAAG
* * * *
9516595 TGATGCAAATGCAAATGTCTCTT-TTATAATGTATATGGGAATGCCTT-GATTATGATGCAGATG
1 TGATGCAAATGCAAATGTCT-TTCTTATAATGCAAATGCGAATACCTTAG-TTATGATGCAGATG
* * * * ***
9516658 ATGTAAATACGAA-TATTTCTCCTGATATAAATGTAAGTAATGCAACTATGTATGCCTTTTTCAT
64 ATGTAAATACAAAGTATTTCTCATGATACAAATGCAAGTAATGCAACTACAAATGCCTTTTTCAT
* * * *
9516722 GATGTAGATGCGAATGAAAATGTCTTTCTCATGATGCAC-A-TGCAAGTGCAAATGCAAG
129 GATATAGATGCAAATGAAAATGTCTTTCTCATGATGCACAATTG-AA-TACGAATGCAAG
** *
9516780 TGACACAAATGCGAATGTCTTT
1 TGATGCAAATGCAAATGTCTTT
9516802 TCTTTTTTTT
Statistics
Matches: 175, Mismatches: 28, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
183 2 0.01
184 5 0.03
185 103 0.59
186 1 0.01
187 62 0.35
188 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (186 bp):
TGATGCAAATGCAAATGTCTTTCTTATAATGCAAATGCGAATACCTTAGTTATGATGCAGATGAT
GTAAATACAAAGTATTTCTCATGATACAAATGCAAGTAATGCAACTACAAATGCCTTTTTCATGA
TATAGATGCAAATGAAAATGTCTTTCTCATGATGCACAATTGAATACGAATGCAAG
Found at i:9518360 original size:146 final size:145
Alignment explanation
Indices: 9518076--9518373 Score: 409
Period size: 147 Copynumber: 2.0 Consensus size: 145
9518066 TTCTTTTTTC
* * * * * *
9518076 TTTTTTTAGATTCTAATTGAAGTTTTATTCACTTTTTGCCCTAGATTCATCTTCGAGATGCATGT
1 TTTTTTTAGATTCTAACTAAAGTTTTAGTCACTTTTTACCCTAGATTCATCTACGAGATGCATAT
* * * * * *
9518141 TTTTTTTTCTTTGCTTTTTTTTCTTTTTTGGAAACATCTAATTTTCAACTTTAGCATTCTACTTT
66 ATTTCTTTCCTTGCTTTTTTTTCTTTTTAGGAAACATCTAACTTTCAACTTTAACATTCTACTTT
*
9518206 CTTGAATTCTATCTT
131 CTTAAATTCTATCTT
* * * *
9518221 TTTTTTTAGATTCTAACTAAAGTTTTAGTCATTTTTTACCCTAGATCCTTATCTACGTGGTGCAT
1 TTTTTTTAGATTCTAACTAAAGTTTTAGTCACTTTTTACCCTAGAT--TCATCTACGAGATGCAT
*
9518286 ATATTTCTTTCCTTGCTTTTTTTTCTTTTTAGGAAACATCTGACTTT-AACTTTAACATTCTACT
64 ATATTTCTTTCCTTGCTTTTTTTTCTTTTTAGGAAACATCTAACTTTCAACTTTAACATTCTACT
9518350 TTCTTAAATTCTATCTT
129 TTCTTAAATTCTATCTT
9518367 TTTTTTT
1 TTTTTTT
9518374 TTTAAGATTC
Statistics
Matches: 133, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
145 41 0.31
146 39 0.29
147 53 0.40
ACGTcount: A:0.20, C:0.16, G:0.09, T:0.54
Consensus pattern (145 bp):
TTTTTTTAGATTCTAACTAAAGTTTTAGTCACTTTTTACCCTAGATTCATCTACGAGATGCATAT
ATTTCTTTCCTTGCTTTTTTTTCTTTTTAGGAAACATCTAACTTTCAACTTTAACATTCTACTTT
CTTAAATTCTATCTT
Found at i:9518441 original size:146 final size:144
Alignment explanation
Indices: 9518013--9518442 Score: 399
Period size: 147 Copynumber: 2.9 Consensus size: 144
9518003 GCTCTTTCTT
* * *
9518013 TTTTTA-GAAACATTTGACTTCAACTTTAGCA-TATACTTTCTTGAATTCTATTTTTCTTTTTTC
1 TTTTTAGGAAACATCTGACTTTAACTTTAGCATTCTACTTTCTTGAATTCTA----TC-TTTTT-
* * *
9518076 TTTTTTTAGATTCTAATTGAAGTTTTATTCACTTTTTGCCCTAGAT-TCATCT-TCGAGATGCAT
60 TTTTTTTAGATTCTAACTGAAGTTTTATTCA-TTTTTGCCCTAGATCTAATCTCTCGAAATGCAT
* *
9518139 GTTTTTTTTTCTTTGCTTTTTTTTC
124 G----TCTTTCCTTGCTTTTTTTTC
* * *
9518164 TTTTTTGGAAACATCTAATTTTCAACTTTAGCATTCTACTTTCTTGAATTCTATC---TTTTTTT
1 TTTTTAGGAAACATCTGACTTT-AACTTTAGCATTCTACTTTCTTGAATTCTATCTTTTTTTTTT
* * * * * ** ** *
9518226 TTAGATTCTAACTAAAGTTTTAGTCATTTTTTACCCTAGATCCTTATCTACGTGGTGCATATATT
65 TTAGATTCTAACTGAAGTTTTATTCA-TTTTTGCCCTAGAT-CTAATCT-C-TCG-AAATGCATG
9518291 TCTTTCCTTGCTTTTTTTTC
125 TCTTTCCTTGCTTTTTTTTC
* *
9518311 TTTTTAGGAAACATCTGACTTTAACTTTAACATTCTACTTTCTTAAATTCTATCTTTTTTTTTTT
1 TTTTTAGGAAACATCTGACTTTAACTTTAGCATTCTACTTTCTTGAATTCTATCTTTTTTTTTTT
* *
9518376 TAAGATTCTAGCTGAAGTTTTATTCATTCTTTGCCCCAGACTCTAATCTCT-GAAATGCATGTCT
66 T-AGATTCTAACTGAAGTTTTATTCATT-TTTGCCCTAGA-TCTAATCTCTCGAAATGCATGTCT
9518440 TTC
128 TTC
9518443 TTTCATTACT
Statistics
Matches: 228, Mismatches: 36, Indels: 35
0.76 0.12 0.12
Matches are distributed among these distances:
145 41 0.18
146 42 0.18
147 43 0.19
148 1 0.00
149 12 0.05
150 40 0.18
151 10 0.04
152 11 0.05
153 10 0.04
154 18 0.08
ACGTcount: A:0.21, C:0.17, G:0.09, T:0.52
Consensus pattern (144 bp):
TTTTTAGGAAACATCTGACTTTAACTTTAGCATTCTACTTTCTTGAATTCTATCTTTTTTTTTTT
TAGATTCTAACTGAAGTTTTATTCATTTTTGCCCTAGATCTAATCTCTCGAAATGCATGTCTTTC
CTTGCTTTTTTTTC
Found at i:9518455 original size:150 final size:147
Alignment explanation
Indices: 9517992--9518459 Score: 438
Period size: 150 Copynumber: 3.1 Consensus size: 147
9517982 GTCATGTGTC
* * * * * *
9517992 TTTCTTT-ATTTGCTCTTTCTT-TTTTTA-GAAACATTTGAC-TTCAACTTTAGCA-TATACTTT
1 TTTCTTTCA-TTGCTTTTTTTTCTTTTTAGGAAACATCTAACTTTCAACTTTAACATTCTACTTT
* *
9518052 CTTGAATTCTATTTTTCTTTTTTCTTTTTTTAGATTCTAATTGAAGTTTTATTCACTTTTTGCCC
65 CTTAAATTCTA----TC-TTTTT-TTTTTTTAGATTCTAACTGAAGTTTTATTCA-TTTTTGCCC
* *
9518117 TAGAT-TCATCT-TCGAGATGCATGTT
123 TAGATCTAATCTCT-GA-ATGCATGTA
* * * * *
9518142 TTTTTTTCTTTGCTTTTTTTTCTTTTTTGGAAACATCTAATTTTCAACTTTAGCATTCTACTTTC
1 TTTCTTTCATTGCTTTTTTTTCTTTTTAGGAAACATCTAACTTTCAACTTTAACATTCTACTTTC
* * * *
9518207 TTGAATTCTATC---TTTTTTTTTAGATTCTAACTAAAGTTTTAGTCATTTTTTACCCTAGATCC
66 TTAAATTCTATCTTTTTTTTTTTTAGATTCTAACTGAAGTTTTATTCA-TTTTTGCCCTAGAT-C
* * *
9518269 TTATCTACGTG-GTGCATATA
129 TAATCT-C-TGAATGCATGTA
* *
9518289 TTTCTTTCCTTGCTTTTTTTTCTTTTTAGGAAACATCTGACTTT-AACTTTAACATTCTACTTTC
1 TTTCTTTCATTGCTTTTTTTTCTTTTTAGGAAACATCTAACTTTCAACTTTAACATTCTACTTTC
* *
9518353 TTAAATTCTATCTTTTTTTTTTTTAAGATTCTAGCTGAAGTTTTATTCATTCTTTGCCCCAGACT
66 TTAAATTCTATCTTTTTTTTTTTT-AGATTCTAACTGAAGTTTTATTCATT-TTTGCCCTAGA-T
*
9518418 CTAATCTCTGAAATGCATGTC
128 CTAATCTCTG-AATGCATGTA
*
9518439 TTTCTTTCATTACTTTTTTTT
1 TTTCTTTCATTGCTTTTTTTT
9518460 TTGCTCTTTT
Statistics
Matches: 264, Mismatches: 36, Indels: 36
0.79 0.11 0.11
Matches are distributed among these distances:
145 41 0.16
146 32 0.12
147 50 0.19
148 2 0.01
149 13 0.05
150 80 0.30
151 6 0.02
152 9 0.03
153 13 0.05
154 18 0.07
ACGTcount: A:0.20, C:0.17, G:0.09, T:0.54
Consensus pattern (147 bp):
TTTCTTTCATTGCTTTTTTTTCTTTTTAGGAAACATCTAACTTTCAACTTTAACATTCTACTTTC
TTAAATTCTATCTTTTTTTTTTTTAGATTCTAACTGAAGTTTTATTCATTTTTGCCCTAGATCTA
ATCTCTGAATGCATGTA
Found at i:9520804 original size:34 final size:34
Alignment explanation
Indices: 9520761--9520828 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
9520751 CTAGCTGGGC
* *
9520761 ATACCATTTTACTGTAAACTTGATAAAACTATCT
1 ATACCATTTTACCGCAAACTTGATAAAACTATCT
9520795 ATACCATTTTACCGCAAACTTGATAAAACTATCT
1 ATACCATTTTACCGCAAACTTGATAAAACTATCT
9520829 TGAAAGTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (34 bp):
ATACCATTTTACCGCAAACTTGATAAAACTATCT
Found at i:9525216 original size:17 final size:17
Alignment explanation
Indices: 9525191--9525223 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9525181 ATCTCTTTAT
9525191 TTTGATTATAGTTCATA
1 TTTGATTATAGTTCATA
*
9525208 TTTGCTTATAGTTCAT
1 TTTGATTATAGTTCAT
9525224 CAATTCATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.09, G:0.12, T:0.55
Consensus pattern (17 bp):
TTTGATTATAGTTCATA
Found at i:9527546 original size:19 final size:18
Alignment explanation
Indices: 9527511--9527548 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
9527501 CCATCATTAG
9527511 AATTTTTCATTATTTATT
1 AATTTTTCATTATTTATT
9527529 AATTTTTACTATTA-TTATT
1 AATTTTT-C-ATTATTTATT
9527548 A
1 A
9527549 TTTCACCCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 7 0.39
20 4 0.22
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (18 bp):
AATTTTTCATTATTTATT
Found at i:9528475 original size:12 final size:12
Alignment explanation
Indices: 9528458--9528510 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
9528448 CATCATCCTC
9528458 TTCTTTTTTTTT
1 TTCTTTTTTTTT
*
9528470 TTCTTTTTTTCT
1 TTCTTTTTTTTT
**
9528482 ACCTTTTTTTTT
1 TTCTTTTTTTTT
* *
9528494 TCTCTTTCTTCTT
1 T-TCTTTTTTTTT
9528507 TTCT
1 TTCT
9528511 CTTCTCTTAG
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
12 23 0.72
13 9 0.28
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (12 bp):
TTCTTTTTTTTT
Found at i:9528508 original size:15 final size:14
Alignment explanation
Indices: 9528458--9528518 Score: 65
Period size: 15 Copynumber: 4.4 Consensus size: 14
9528448 CATCATCCTC
9528458 TTCTTTTTTT-T-T
1 TTCTTTTTTTCTCT
9528470 TTCTTTTTTTCTACCT
1 TTCTTTTTTTCT--CT
9528486 TT-TTTTTTTCTCT
1 TTCTTTTTTTCTCT
*
9528499 TTCTTCTTTTCTCT
1 TTCTTTTTTTCTCT
9528513 TCTCTT
1 T-TCTT
9528519 AGTAGTATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
12 10 0.24
13 5 0.12
14 11 0.26
15 13 0.31
16 3 0.07
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (14 bp):
TTCTTTTTTTCTCT
Found at i:9528630 original size:28 final size:30
Alignment explanation
Indices: 9528588--9528661 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 30
9528578 CTCTCTTTCT
*
9528588 TTTTTTTTCATTTTTTTTAAA-TGAAATTGA
1 TTTTTTTT-ATTTTTTTAAAACTGAAATTGA
9528618 TTTTTTTTATTTTTTTAAAAAACTGAAATTGA
1 TTTTTTTTATTTTTTT--AAAACTGAAATTGA
9528650 TTTTTTTT-TTTT
1 TTTTTTTTATTTT
9528662 GTTTGTTGGA
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
29 8 0.20
30 8 0.20
31 7 0.17
32 17 0.43
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (30 bp):
TTTTTTTTATTTTTTTAAAACTGAAATTGA
Found at i:9528731 original size:13 final size:13
Alignment explanation
Indices: 9528710--9528739 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
9528700 TAAAGAAGAC
9528710 TTTGAATTTTTTT
1 TTTGAATTTTTTT
*
9528723 TTTGGATTTTTTT
1 TTTGAATTTTTTT
9528736 TTTG
1 TTTG
9528740 TGGTTGGCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.00, G:0.13, T:0.77
Consensus pattern (13 bp):
TTTGAATTTTTTT
Found at i:9529641 original size:28 final size:28
Alignment explanation
Indices: 9529610--9529663 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 28
9529600 TTTTTTGCCT
9529610 TTTTTTAAATTTAAA-TTT-AATTAATTAA
1 TTTTTT-AA-TTAAATTTTCAATTAATTAA
9529638 TTTTTTAATTAAATTTTCAATTAATT
1 TTTTTTAATTAAATTTTCAATTAATT
9529664 TGATTAATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 5 0.21
27 5 0.21
28 14 0.58
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (28 bp):
TTTTTTAATTAAATTTTCAATTAATTAA
Found at i:9529645 original size:12 final size:12
Alignment explanation
Indices: 9529630--9529664 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
9529620 TTAAATTTAA
9529630 TTAATTAATTTT
1 TTAATTAATTTT
*
9529642 TTAATTAAATTT
1 TTAATTAATTTT
*
9529654 TCAATTAATTT
1 TTAATTAATTT
9529665 GATTAATTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (12 bp):
TTAATTAATTTT
Found at i:9529661 original size:16 final size:15
Alignment explanation
Indices: 9529620--9529663 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 15
9529610 TTTTTTAAAT
9529620 TTAAA-TTTAATTAA
1 TTAAATTTTAATTAA
9529634 TT-AATTTT--TTAA
1 TTAAATTTTAATTAA
9529646 TTAAATTTTCAATTAA
1 TTAAATTTT-AATTAA
9529662 TT
1 TT
9529664 TGATTAATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
12 6 0.24
13 8 0.32
14 5 0.20
16 6 0.24
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (15 bp):
TTAAATTTTAATTAA
Found at i:9532359 original size:32 final size:31
Alignment explanation
Indices: 9532304--9532365 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 31
9532294 GAATTATTTC
* *
9532304 AGATTTAAATTATTATAAATTTGAGTATTTTA
1 AGATTCAAAATATTATAAATTTGAG-ATTTTA
* *
9532336 AGATTCAAAATATTTTAACTTTGAGATTTT
1 AGATTCAAAATATTATAAATTTGAGATTTT
9532366 TTTTAATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 5 0.19
32 21 0.81
ACGTcount: A:0.39, C:0.03, G:0.10, T:0.48
Consensus pattern (31 bp):
AGATTCAAAATATTATAAATTTGAGATTTTA
Found at i:9533757 original size:16 final size:16
Alignment explanation
Indices: 9533736--9533768 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
9533726 AAACAAAACC
9533736 CAGAACCGACCAGCCT
1 CAGAACCGACCAGCCT
9533752 CAGAACCGACCAGCCT
1 CAGAACCGACCAGCCT
9533768 C
1 C
9533769 CTCCATTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.45, G:0.18, T:0.06
Consensus pattern (16 bp):
CAGAACCGACCAGCCT
Found at i:9535616 original size:25 final size:26
Alignment explanation
Indices: 9535588--9535636 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
9535578 TTTAATTTTA
*
9535588 TATTTATATA-TTTTATTAA-AAATAT
1 TATTTA-ATACTTTAATTAATAAATAT
9535613 TATTTAATACTTTAATTAATAAAT
1 TATTTAATACTTTAATTAATAAAT
9535637 TCATTTGCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 14 0.67
26 4 0.19
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (26 bp):
TATTTAATACTTTAATTAATAAATAT
Found at i:9535642 original size:25 final size:25
Alignment explanation
Indices: 9535589--9535642 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 25
9535579 TTAATTTTAT
* *
9535589 ATTTATATATTTTATTAAAAATATT
1 ATTTATATATTTAATTAAAAATATC
9535614 ATTTA-ATACTTTAATTAATAAAT-TC
1 ATTTATATA-TTTAATTAA-AAATATC
9535639 ATTT
1 ATTT
9535643 GCCATCTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
24 3 0.12
25 18 0.72
26 4 0.16
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.54
Consensus pattern (25 bp):
ATTTATATATTTAATTAAAAATATC
Found at i:9537652 original size:19 final size:21
Alignment explanation
Indices: 9537598--9537655 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
9537588 ATAATATAAT
* *
9537598 ATATAAATTATCATGTAATTA
1 ATATAAAATATCATGCAATTA
9537619 ATATAAAATATCATGCAATTA
1 ATATAAAATATCATGCAATTA
*
9537640 AT-TAATA-ATCATGCAA
1 ATATAAAATATCATGCAA
9537656 AAAAAATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 9 0.26
20 4 0.12
21 21 0.62
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (21 bp):
ATATAAAATATCATGCAATTA
Found at i:9539451 original size:17 final size:17
Alignment explanation
Indices: 9539408--9539457 Score: 75
Period size: 18 Copynumber: 2.9 Consensus size: 17
9539398 CAGACATTCC
9539408 AGATTTGCAAAGGTTCT
1 AGATTTGCAAAGGTTCT
*
9539425 AGGTTTTGCAAAGGTTCT
1 A-GATTTGCAAAGGTTCT
9539443 AGATTTGC-AAGGTTC
1 AGATTTGCAAAGGTTC
9539458 CAAGTTTCGC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
16 7 0.23
17 7 0.23
18 16 0.53
ACGTcount: A:0.26, C:0.12, G:0.26, T:0.36
Consensus pattern (17 bp):
AGATTTGCAAAGGTTCT
Found at i:9539481 original size:34 final size:34
Alignment explanation
Indices: 9539389--9539487 Score: 112
Period size: 34 Copynumber: 2.9 Consensus size: 34
9539379 ATAAAGATTT
*
9539389 CAAGTTTTGCAGACA-TTCCAGATTTGCAAAGGTTC
1 CAAGTTTTGCAGA-AGTTTCAGATTTGC-AAGGTTC
* * *
9539424 TAGGTTTTGCA-AAGGTTCTAGATTTGCAAGGTTC
1 CAAGTTTTGCAGAAGTTTC-AGATTTGCAAGGTTC
*
9539458 CAAGTTTCGCAGAAGTTTCAGATTTGCAAG
1 CAAGTTTTGCAGAAGTTTCAGATTTGCAAG
9539488 AACTCAAGGA
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
33 1 0.02
34 29 0.55
35 23 0.43
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.33
Consensus pattern (34 bp):
CAAGTTTTGCAGAAGTTTCAGATTTGCAAGGTTC
Found at i:9539523 original size:17 final size:17
Alignment explanation
Indices: 9539498--9539558 Score: 61
Period size: 17 Copynumber: 3.6 Consensus size: 17
9539488 AACTCAAGGA
* *
9539498 TTTGTAAGAGTTTCAGT
1 TTTGCAAGAATTTCAGT
9539515 TTTGCAAGAATTTCA-T
1 TTTGCAAGAATTTCAGT
* *
9539531 GTTCGCAAGAATTTCAGA
1 -TTTGCAAGAATTTCAGT
*
9539549 TTTGTAAGAA
1 TTTGCAAGAA
9539559 CTTTAAAGAT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
16 1 0.03
17 35 0.97
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (17 bp):
TTTGCAAGAATTTCAGT
Found at i:9539882 original size:21 final size:22
Alignment explanation
Indices: 9539858--9539904 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
9539848 TTTCATTCGA
9539858 AAAATTTAAAA-ATTCACATCC
1 AAAATTTAAAATATTCACATCC
*
9539879 AAAATTTAAAATATTCACATTC
1 AAAATTTAAAATATTCACATCC
9539901 AAAA
1 AAAA
9539905 AATTTTAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 11 0.46
22 13 0.54
ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAATTTAAAATATTCACATCC
Found at i:9539888 original size:44 final size:44
Alignment explanation
Indices: 9539783--9539911 Score: 111
Period size: 44 Copynumber: 2.9 Consensus size: 44
9539773 ATTTCAAGGC
* * * * * *
9539783 TCACCCCTATAATTCAAATATTTTTATTCAAAAATTTTAGAAAT
1 TCACACCTAAAATTTAAAGATTTTCATTCAAAAATTTTAAAAAT
* *
9539827 TCATACCTAAAAGTTAAAGATTTTCATTCGAAAAA-TTTAAAAAT
1 TCACACCTAAAATTTAAAGATTTTCATTC-AAAAATTTTAAAAAT
*
9539871 TCACATCC-AAAATTTAAA-ATATTCACATTCAAAAAATTTTA
1 TCACA-CCTAAAATTTAAAGAT-TT-TCATTC-AAAAATTTTA
9539912 GAGATTTTTA
Statistics
Matches: 68, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
43 2 0.03
44 45 0.66
45 17 0.25
46 4 0.06
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (44 bp):
TCACACCTAAAATTTAAAGATTTTCATTCAAAAATTTTAAAAAT
Found at i:9539930 original size:69 final size:69
Alignment explanation
Indices: 9539844--9539973 Score: 179
Period size: 69 Copynumber: 1.9 Consensus size: 69
9539834 TAAAAGTTAA
* * * * *
9539844 AGATTTTCATTCGAAAAATTTAAAAATTCACATCCAAAATTTAAAATATTCACATTCAAAAAATT
1 AGATTTTCATTCAAAAAAATTAAAAATTCACAACCAAAATTTAAAAGATTCACATCCAAAAAATT
9539909 TTAG
66 TTAG
* * * *
9539913 AGATTTTTATTCAAAAAAATTAAACATTCACAACCAAAGTTTCAAAGATTCACATCCAAAA
1 AGATTTTCATTCAAAAAAATTAAAAATTCACAACCAAAATTTAAAAGATTCACATCCAAAA
9539974 TTTAAAGGTT
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
69 52 1.00
ACGTcount: A:0.48, C:0.15, G:0.05, T:0.32
Consensus pattern (69 bp):
AGATTTTCATTCAAAAAAATTAAAAATTCACAACCAAAATTTAAAAGATTCACATCCAAAAAATT
TTAG
Found at i:9539963 original size:22 final size:21
Alignment explanation
Indices: 9539927--9539980 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
9539917 TTTTATTCAA
* *
9539927 AAAAATTAAACATTCACAACC
1 AAAATTTAAAGATTCACAACC
* *
9539948 AAAGTTTCAAAGATTCACATCC
1 AAAATTT-AAAGATTCACAACC
9539970 AAAATTTAAAG
1 AAAATTTAAAG
9539981 GTTCTTTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 9 0.33
22 18 0.67
ACGTcount: A:0.52, C:0.19, G:0.06, T:0.24
Consensus pattern (21 bp):
AAAATTTAAAGATTCACAACC
Found at i:9540982 original size:65 final size:65
Alignment explanation
Indices: 9540878--9541007 Score: 251
Period size: 65 Copynumber: 2.0 Consensus size: 65
9540868 AATAATAATT
9540878 GTTCAGACAATTTTGCACTCCAACTCAAATTCTTTCTAAAAAACTCATTCGATTGACATTCTCAA
1 GTTCAGACAATTTTGCACTCCAACTCAAATTCTTTCTAAAAAACTCATTCGATTGACATTCTCAA
*
9540943 GTTCAGACAATTTTGCACTCCAACTCAAATTCTTTCTAAAAAACTCATTCGATTGACATTTTCAA
1 GTTCAGACAATTTTGCACTCCAACTCAAATTCTTTCTAAAAAACTCATTCGATTGACATTCTCAA
9541008 TCTTTGAACC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.34, C:0.24, G:0.08, T:0.35
Consensus pattern (65 bp):
GTTCAGACAATTTTGCACTCCAACTCAAATTCTTTCTAAAAAACTCATTCGATTGACATTCTCAA
Found at i:9545870 original size:13 final size:14
Alignment explanation
Indices: 9545843--9545871 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
9545833 AAAATAAAAT
9545843 TATCATGCAAATAA
1 TATCATGCAAATAA
9545857 TATCATGC-AATAA
1 TATCATGCAAATAA
9545870 TA
1 TA
9545872 ATATATCATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.48, C:0.14, G:0.07, T:0.31
Consensus pattern (14 bp):
TATCATGCAAATAA
Found at i:9545879 original size:18 final size:18
Alignment explanation
Indices: 9545856--9545927 Score: 63
Period size: 18 Copynumber: 3.9 Consensus size: 18
9545846 CATGCAAATA
9545856 ATATCATGCAATAATAAT
1 ATATCATGCAATAATAAT
* *
9545874 ATATCATGCAATTACAAT
1 ATATCATGCAATAATAAT
* ** *
9545892 ATAGCCAAACAAAAATAAT
1 ATA-TCATGCAATAATAAT
*
9545911 ATAATTATGCAATAATA
1 AT-ATCATGCAATAATA
9545928 TAATATATAA
Statistics
Matches: 39, Mismatches: 13, Indels: 3
0.71 0.24 0.05
Matches are distributed among these distances:
18 19 0.49
19 19 0.49
20 1 0.03
ACGTcount: A:0.53, C:0.12, G:0.06, T:0.29
Consensus pattern (18 bp):
ATATCATGCAATAATAAT
Found at i:9545961 original size:20 final size:20
Alignment explanation
Indices: 9545936--9545974 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
9545926 TATAATATAT
9545936 AAAATATCATGCAATTAATA
1 AAAATATCATGCAATTAATA
9545956 AAAATATCATGCAATTAAT
1 AAAATATCATGCAATTAAT
9545975 TAATAATCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (20 bp):
AAAATATCATGCAATTAATA
Found at i:9560483 original size:357 final size:356
Alignment explanation
Indices: 9559469--9561068 Score: 2035
Period size: 357 Copynumber: 4.5 Consensus size: 356
9559459 ATTGAAGGTA
***
9559469 GTTTATAATAAAAGACGCCTTTAATAATTCGTGAAAATTTTTTGAAAAAAATTATTGAAGGCGTT
1 GTTTATAATAAAAGACGCCTTTAATAA-TCCAAAAAATTTTTTGAAAAAAATTATTGAAGGCGTT
* * * * *
9559534 GTTTTCTGCAACTGCTTTCAGTTATTATCTACAAACTGTGATAGGAATTATTAAAGGCGTCTTTC
65 GTTTTTTGCAACCGCCTTCAGTTATTATCTACAAACTGTGATAGAAATTATTAAAGGCATCTTTC
* * * * * * * *
9559599 TTGGATGTACGCCCTCAATAACAGTGTTAGAATTTGTGTGACGGTATATAAAAGATATTTTACAG
130 TTAGATATACGCCTTTAATAACAGTGTTAGAATTTATGTGGCGGTATATAAAAGGTATTTGACAG
* * * *
9559664 TAAAAGACACCTTTAATAATTTTCAAAATATTTAGTGGAAAAATTTTGAAGGCGTCTATTATTAA
195 TAGAAGACGCCTTTAATAATTCTCAAAATATTTAGTGAAAAAATTTTGAAGGCGTCTATTATTAA
9559729 CAAACACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGCT-CATTTTCTAATAAAC
260 CAAACACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGG-TGCATTTTCTAATAAAC
* *
9559793 GCCTTCCATTACCATCGTGATATATTAAAAGCG
324 GCCTTCCATTACCATCGTGGTATATTAAAGGCG
* * * * *
9559826 GTTTATAATAAAAGACACCTTTAATAATCTAAGAAATTTTTTTAAGGAAAATTATTGAAGGCGTT
1 GTTTATAATAAAAGACGCCTTTAATAATCCAAAAAATTTTTTGAA-AAAAATTATTGAAGGCGTT
* *
9559891 GTTTTTTGCAACCGCCTTCAATTATTATCTACAAAACTATGATAGAAATTATTAAAGGCATCTTT
65 GTTTTTTGCAACCGCCTTCAGTTATTATCTAC-AAACTGTGATAGAAATTATTAAAGGCATCTTT
* * * * *
9559956 CTTGGATGTATGCCTTTAATAACAGTGTTAGAATTTATGTGACGGTATATAAAAGGTATTTTACA
129 CTTAGATATACGCCTTTAATAACAGTGTTAGAATTTATGTGGCGGTATATAAAAGGTATTTGACA
* * * * * * *
9560021 ATAGAATACGCCTTTAATAATTCTCAAAATATATAGTGAAAAATTTTTAAAGGCATCTGTTATTA
194 GTAGAAGACGCCTTTAATAATTCTCAAAATATTTAGTGAAAAAATTTTGAAGGCGTCTATTATTA
* * *
9560086 ACAAACACCTTCAGTAATGGATTACTAAGTTTATAGGTATATTGAAGGTGCCTTTTCTAATAAAT
259 ACAAACACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCATTTTCTAATAAAC
9560151 GCCTTCCATTACCATCGTGGTATATTAAAGGCG
324 GCCTTCCATTACCATCGTGGTATATTAAAGGCG
* * * * *
9560184 ATTTATAATAAAAGACACCTTTAAAAATCCACAAAAAGTTTTTGAAAAAAATTATTAAAGGCGTT
1 GTTTATAATAAAAGACGCCTTTAATAATCCA-AAAAATTTTTTGAAAAAAATTATTGAAGGCGTT
* * *
9560249 GTTTTTTGCAACCGCCTTCAATTATTATCTATAAACTGTGATAGAAATTATTAAAGGCATCTATC
65 GTTTTTTGCAACCGCCTTCAGTTATTATCTACAAACTGTGATAGAAATTATTAAAGGCATCTTTC
* * * * *
9560314 TTAAATATACACTTTTAATAACAGTGTTAGAATTTATGTGGCGGTATATATAAGGTATTTGATAG
130 TTAGATATACGCCTTTAATAACAGTGTTAGAATTTATGTGGCGGTATATAAAAGGTATTTGACAG
* * *
9560379 TAGAAGACGCCTTTAATAATTCACAAAATATCTAGTGAAAAAATTTTGAAGGCGTATATTATTAA
195 TAGAAGACGCCTTTAATAATTCTCAAAATATTTAGTGAAAAAATTTTGAAGGCGTCTATTATTAA
** * *
9560444 CAAATGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAATGTGCATTTTTTAATAAACG
260 CAAACACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCATTTTCTAATAAACG
* ** *
9560509 CCTTCCACTACCATTTTGGTTTATTAAAGGCG
325 CCTTCCATTACCATCGTGGTATATTAAAGGCG
* * * * *
9560541 GTTTATAATAAAAGACGCCTTTAAAAATCCATGAAAATTTTTTGAGAAAAATTATTGAAAGCATT
1 GTTTATAATAAAAGACGCCTTTAATAATCCA-AAAAATTTTTTGAAAAAAATTATTGAAGGCGTT
* * * * *
9560606 ATTTTCTGTAACTGCCTTCAGTTATTATCTACAAACTGTGATAGAAATTATTAAAGGCATCTATC
65 GTTTTTTGCAACCGCCTTCAGTTATTATCTACAAACTGTGATAGAAATTATTAAAGGCATCTTTC
* * * * * * *
9560671 TTAAATATATGCCTTTAATAACAATGTTAAAATTTGTGTGGCGGTATATAGAAGGCATTTGACAG
130 TTAGATATACGCCTTTAATAACAGTGTTAGAATTTATGTGGCGGTATATAAAAGGTATTTGACAG
* * *
9560736 TAGAAGATGCCTTTAATAATT-TCTAAAATATTTAGTGAAAAACTTTTGAAGGCGTCTATTAGTA
195 TAGAAGACGCCTTTAATAATTCTC-AAAATATTTAGTGAAAAAATTTTGAAGGCGTCTATTATTA
* *
9560800 ACAAACGCCTTCACTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGTC-TTTTCTAATAAA
259 ACAAACACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTG-CATTTTCTAATAAA
* * * ** *
9560864 TGCCTTCTATTATCATTATGGTATATTGAAGGC-
323 CGCCTTCCATTACCATCGTGGTATATTAAAGGCG
* * * *** * *
9560897 GTGTCATAATAAAAAATGCCTTTAATAATCCAAGAAAA-TTTTTGAGGGAAATTATTGAATGTGT
1 GT-TTATAATAAAAGACGCCTTTAATAATCCAA-AAAATTTTTTGAAAAAAATTATTGAAGGCGT
* * * * **
9560961 TGTTTTTTGCAACCGCCTTCAGTAATTAACCACAAA-TGTGATATAAATTATTAAAGGTGTCTTT
64 TGTTTTTTGCAACCGCCTTCAGTTATTATCTACAAACTGTGATAGAAATTATTAAAGGCATCTTT
* * *
9561025 GTTCGATATAC-TCTTTCAATAACAGTGTTAGAATTTATGTGGCG
129 CTTAGATATACGCCTTT-AATAACAGTGTTAGAATTTATGTGGCG
9561069 ATATGTTCAA
Statistics
Matches: 1088, Mismatches: 146, Indels: 20
0.87 0.12 0.02
Matches are distributed among these distances:
354 4 0.00
355 55 0.05
356 66 0.06
357 641 0.59
358 311 0.29
359 11 0.01
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (356 bp):
GTTTATAATAAAAGACGCCTTTAATAATCCAAAAAATTTTTTGAAAAAAATTATTGAAGGCGTTG
TTTTTTGCAACCGCCTTCAGTTATTATCTACAAACTGTGATAGAAATTATTAAAGGCATCTTTCT
TAGATATACGCCTTTAATAACAGTGTTAGAATTTATGTGGCGGTATATAAAAGGTATTTGACAGT
AGAAGACGCCTTTAATAATTCTCAAAATATTTAGTGAAAAAATTTTGAAGGCGTCTATTATTAAC
AAACACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCATTTTCTAATAAACGC
CTTCCATTACCATCGTGGTATATTAAAGGCG
Found at i:9571481 original size:14 final size:13
Alignment explanation
Indices: 9571464--9571505 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
9571454 CCAAAAAAGG
*
9571464 AAAAGAAAAACTAA
1 AAAAGAAAAA-GAA
9571478 AAAAGAAAAAGAA
1 AAAAGAAAAAGAA
9571491 AAAAGCAAAAA-AA
1 AAAAG-AAAAAGAA
9571504 AA
1 AA
9571506 GAGATGCCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 11 0.42
14 15 0.58
ACGTcount: A:0.83, C:0.05, G:0.10, T:0.02
Consensus pattern (13 bp):
AAAAGAAAAAGAA
Found at i:9571481 original size:20 final size:20
Alignment explanation
Indices: 9571456--9571493 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
9571446 GAGTGGCACC
*
9571456 AAAAAAGGAAAAGAAAAACT
1 AAAAAAGAAAAAGAAAAACT
9571476 AAAAAAGAAAAAGAAAAA
1 AAAAAAGAAAAAGAAAAA
9571494 AGCAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (20 bp):
AAAAAAGAAAAAGAAAAACT
Found at i:9571500 original size:20 final size:20
Alignment explanation
Indices: 9571456--9571502 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
9571446 GAGTGGCACC
* **
9571456 AAAAAAGGAAAAGAAAAACT
1 AAAAAAGAAAAAGAAAAAAG
9571476 AAAAAAGAAAAAGAAAAAAG
1 AAAAAAGAAAAAGAAAAAAG
9571496 CAAAAAA
1 -AAAAAA
9571503 AAAGAGATGC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 17 0.74
21 6 0.26
ACGTcount: A:0.81, C:0.04, G:0.13, T:0.02
Consensus pattern (20 bp):
AAAAAAGAAAAAGAAAAAAG
Found at i:9571505 original size:13 final size:13
Alignment explanation
Indices: 9571464--9571505 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
9571454 CCAAAAAAGG
*
9571464 AAAAGAAAAACTAA
1 AAAAGAAAAA-GAA
9571478 AAAAGAAAAAGAA
1 AAAAGAAAAAGAA
*
9571491 AAAAGCAAAA-AA
1 AAAAGAAAAAGAA
9571503 AAA
1 AAA
9571506 GAGATGCCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 5 0.19
13 11 0.42
14 10 0.38
ACGTcount: A:0.83, C:0.05, G:0.10, T:0.02
Consensus pattern (13 bp):
AAAAGAAAAAGAA
Found at i:9583184 original size:42 final size:42
Alignment explanation
Indices: 9583137--9583222 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
9583127 AACTAAGACA
*
9583137 TAATTTAATAATTAATACCTAATTAAGCCTAATCAATTACTC
1 TAATTTAATAATTAATACCTAATTAAGCCTAACCAATTACTC
*
9583179 TAATTTAATAATTAATGCCTAATTAAGCCTAACCAATTACTC
1 TAATTTAATAATTAATACCTAATTAAGCCTAACCAATTACTC
9583221 TA
1 TA
9583223 TTCCACAATC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.37
Consensus pattern (42 bp):
TAATTTAATAATTAATACCTAATTAAGCCTAACCAATTACTC
Found at i:9583655 original size:6 final size:6
Alignment explanation
Indices: 9583644--9583702 Score: 73
Period size: 6 Copynumber: 9.8 Consensus size: 6
9583634 TATAGACGTG
* * *
9583644 TATATA TATATA TATATA TCTATA TATATA TAGATA TATAGA TATATA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
* *
9583692 GATATA GATAT
1 TATATA TATAT
9583703 GGATAGAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (6 bp):
TATATA
Found at i:9583657 original size:8 final size:8
Alignment explanation
Indices: 9583644--9583702 Score: 73
Period size: 8 Copynumber: 7.4 Consensus size: 8
9583634 TATAGACGTG
9583644 TATATATA
1 TATATATA
9583652 TATATATA
1 TATATATA
*
9583660 TATCTATA
1 TATATATA
9583668 TATATATA
1 TATATATA
*
9583676 GATATATA
1 TATATATA
*
9583684 GATATATA
1 TATATATA
* *
9583692 GATATAGA
1 TATATATA
9583700 TAT
1 TAT
9583703 GGATAGAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 46 1.00
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (8 bp):
TATATATA
Found at i:9583661 original size:14 final size:14
Alignment explanation
Indices: 9583644--9583702 Score: 73
Period size: 14 Copynumber: 4.2 Consensus size: 14
9583634 TATAGACGTG
*
9583644 TATATATATATATA
1 TATATATATATAGA
* *
9583658 TATATCTATATATA
1 TATATATATATAGA
*
9583672 TATAGATATATAGA
1 TATATATATATAGA
*
9583686 TATATAGATATAGA
1 TATATATATATAGA
9583700 TAT
1 TAT
9583703 GGATAGAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 39 1.00
ACGTcount: A:0.47, C:0.02, G:0.07, T:0.44
Consensus pattern (14 bp):
TATATATATATAGA
Found at i:9584456 original size:13 final size:13
Alignment explanation
Indices: 9584438--9584462 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9584428 TCTTTAAATC
9584438 ATTATTTTTTATA
1 ATTATTTTTTATA
9584451 ATTATTTTTTAT
1 ATTATTTTTTAT
9584463 CTTCTAATGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
ATTATTTTTTATA
Found at i:9585815 original size:17 final size:17
Alignment explanation
Indices: 9585766--9585816 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 17
9585756 AATAATATTT
9585766 TATTTATTTATAATAAATA
1 TATTTATTTAT--TAAATA
* *
9585785 TAATTAAATTATTAAATA
1 T-ATTTATTTATTAAATA
9585803 TATTTATTTATTAA
1 TATTTATTTATTAA
9585817 GTAAACTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
17 11 0.41
18 7 0.26
19 1 0.04
20 8 0.30
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATTTATTTATTAAATA
Found at i:9586317 original size:16 final size:16
Alignment explanation
Indices: 9586296--9586329 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9586286 AACATTATCC
9586296 AAAATTACAAAAAAAA
1 AAAATTACAAAAAAAA
**
9586312 AAAATTGTAAAAAAAA
1 AAAATTACAAAAAAAA
9586328 AA
1 AA
9586330 CCATTTTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (16 bp):
AAAATTACAAAAAAAA
Found at i:9588842 original size:32 final size:31
Alignment explanation
Indices: 9588782--9588861 Score: 81
Period size: 32 Copynumber: 2.5 Consensus size: 31
9588772 TAATGATTCC
*
9588782 TATATTAATATTATATAAAATATTAAAATTTA
1 TATATTAATATTATATAAAATATGAAAA-TTA
* ***
9588814 TATATTTATATTATATTTTATATGAAAATTA
1 TATATTAATATTATATAAAATATGAAAATTA
9588845 TATAATATAAT-TTATAT
1 TAT-AT-TAATATTATAT
9588862 CGATATAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
31 6 0.15
32 31 0.77
33 3 0.08
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (31 bp):
TATATTAATATTATATAAAATATGAAAATTA
Found at i:9597300 original size:26 final size:27
Alignment explanation
Indices: 9597255--9597321 Score: 75
Period size: 26 Copynumber: 2.5 Consensus size: 27
9597245 TTTGAAACCC
* *
9597255 TAAACCCTAAAACCTTAAAACATACCA
1 TAAAACCTAAAACCCTAAAACATACCA
* *
9597282 TAAAACCT-AAACCCTAAAATATACCC
1 TAAAACCTAAAACCCTAAAACATACCA
9597308 T-AAACACTAAAACC
1 TAAAAC-CTAAAACC
9597322 AACCCTTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
25 4 0.12
26 18 0.53
27 12 0.35
ACGTcount: A:0.52, C:0.30, G:0.00, T:0.18
Consensus pattern (27 bp):
TAAAACCTAAAACCCTAAAACATACCA
Found at i:9598958 original size:16 final size:15
Alignment explanation
Indices: 9598937--9598976 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
9598927 ATTTCTTTAT
9598937 AAAAAAAACAAAATAA
1 AAAAAAAACAAAA-AA
*
9598953 AAAAAAAAGAAAAAA
1 AAAAAAAACAAAAAA
9598968 AAAAGAAAA
1 AAAA-AAAA
9598977 ATTAAAAAGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.90, C:0.03, G:0.05, T:0.03
Consensus pattern (15 bp):
AAAAAAAACAAAAAA
Found at i:9598960 original size:11 final size:11
Alignment explanation
Indices: 9598939--9598977 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
9598929 TTCTTTATAA
*
9598939 AAAAAACAAAAT
1 AAAAAA-AAAAG
9598951 AAAAAAAAAAG
1 AAAAAAAAAAG
9598962 AAAAAAAAAAG
1 AAAAAAAAAAG
9598973 AAAAA
1 AAAAA
9598978 TTAAAAAGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 20 0.77
12 6 0.23
ACGTcount: A:0.90, C:0.03, G:0.05, T:0.03
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:9598983 original size:16 final size:14
Alignment explanation
Indices: 9598935--9598984 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
9598925 GCATTTCTTT
*
9598935 ATAAAAAAAACAAA
1 ATAAAAAAAAAAAA
9598949 ATAAAAAAAAAAGAA
1 ATAAAAAAAAAA-AA
9598964 A-AAAAAAAGAAAAA
1 ATAAAAAAA-AAAAA
*
9598978 TTAAAAA
1 ATAAAAA
9598985 GGTTTGAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 20 0.65
15 11 0.35
ACGTcount: A:0.86, C:0.02, G:0.04, T:0.08
Consensus pattern (14 bp):
ATAAAAAAAAAAAA
Found at i:9607291 original size:19 final size:20
Alignment explanation
Indices: 9607262--9607302 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
9607252 TTAGGCACGT
9607262 GGAGAGATTGGATGGGGTGG
1 GGAGAGATTGGATGGGGTGG
* *
9607282 GGAG-GATTGGGTGTGGTGG
1 GGAGAGATTGGATGGGGTGG
9607301 GG
1 GG
9607303 TGGGGGAGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.15, C:0.00, G:0.63, T:0.22
Consensus pattern (20 bp):
GGAGAGATTGGATGGGGTGG
Found at i:9607327 original size:31 final size:33
Alignment explanation
Indices: 9607277--9607369 Score: 136
Period size: 31 Copynumber: 2.8 Consensus size: 33
9607267 GATTGGATGG
*
9607277 GGTGGGGAGGATTGGGTGTGGTGGGGTGGGGGA
1 GGTGGGGAGGATTGGGTGTGGTGGGGTGGGGAA
*
9607310 GGT-GGGAGGA-TGGGTGTGGTGGGGTTGGGAA
1 GGTGGGGAGGATTGGGTGTGGTGGGGTGGGGAA
*
9607341 GGTGGGGAGGGATTGGGTGTGGTAGGGTG
1 GGTGGGGA-GGATTGGGTGTGGTGGGGTG
9607370 TATGGAGGGT
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
31 22 0.42
32 11 0.21
33 6 0.11
34 14 0.26
ACGTcount: A:0.11, C:0.00, G:0.67, T:0.23
Consensus pattern (33 bp):
GGTGGGGAGGATTGGGTGTGGTGGGGTGGGGAA
Found at i:9607330 original size:17 final size:17
Alignment explanation
Indices: 9607281--9607332 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
9607271 GGATGGGGTG
9607281 GGGAGGATTGGGTGTGGT
1 GGGAGGA-TGGGTGTGGT
* *
9607299 -GG-GG-TGGGGGAGGT
1 GGGAGGATGGGTGTGGT
9607313 GGGAGGATGGGTGTGGT
1 GGGAGGATGGGTGTGGT
9607330 GGG
1 GGG
9607333 GTTGGGAAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 7
0.71 0.11 0.18
Matches are distributed among these distances:
14 8 0.30
15 2 0.07
16 4 0.15
17 13 0.48
ACGTcount: A:0.10, C:0.00, G:0.69, T:0.21
Consensus pattern (17 bp):
GGGAGGATGGGTGTGGT
Found at i:9607346 original size:23 final size:21
Alignment explanation
Indices: 9607296--9607347 Score: 52
Period size: 23 Copynumber: 2.3 Consensus size: 21
9607286 GATTGGGTGT
9607296 GGTGGGGTGGGGGAGGTGGGA
1 GGTGGGGTGGGGGAGGTGGGA
*
9607317 GGATGGGTGTGGTGGG-GTTGGGAA
1 GG-TGGG-GTGG-GGGAGGTGGG-A
9607341 GGTGGGG
1 GGTGGGG
9607348 AGGGATTGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.19
23 13 0.50
24 6 0.23
ACGTcount: A:0.10, C:0.00, G:0.71, T:0.19
Consensus pattern (21 bp):
GGTGGGGTGGGGGAGGTGGGA
Found at i:9607607 original size:20 final size:20
Alignment explanation
Indices: 9607569--9607606 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
9607559 GATTGTGTTA
*
9607569 TATATTAATTTATAATTTTG
1 TATATGAATTTATAATTTTG
9607589 TATATGAATTT-TAATTTT
1 TATATGAATTTATAATTTT
9607607 TTGTTGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
TATATGAATTTATAATTTTG
Found at i:9607856 original size:26 final size:26
Alignment explanation
Indices: 9607828--9607876 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
9607818 TAAAAAATAA
*
9607828 AAAATATAGGTTTGAAAA-TTTTATT
1 AAAATATAAGTTTGAAAACTTTTATT
9607853 AAAATATAAGTTTGAAAACTTTTA
1 AAAATATAAGTTTGAAAACTTTTA
9607877 ATTTTTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.47, C:0.02, G:0.10, T:0.41
Consensus pattern (26 bp):
AAAATATAAGTTTGAAAACTTTTATT
Found at i:9611291 original size:27 final size:27
Alignment explanation
Indices: 9611252--9611303 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
9611242 GTCCAACACC
*
9611252 AAGTCAGAGTGATGATGGTGGTGGTTT
1 AAGTCAGAGTGATGATGGTGATGGTTT
9611279 AAGTCCAGA-TGATGATGGTGATGGT
1 AAGT-CAGAGTGATGATGGTGATGGT
9611304 GATGGTGCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 19 0.83
28 4 0.17
ACGTcount: A:0.25, C:0.06, G:0.38, T:0.31
Consensus pattern (27 bp):
AAGTCAGAGTGATGATGGTGATGGTTT
Done.