Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 66 of 129
Found at i:10158234 original size:144 final size:145
Alignment explanation
Indices: 10157891--10158367 Score: 499
Period size: 144 Copynumber: 3.4 Consensus size: 145
10157881 TTATTAGTAG
* * *
10157891 AATATATTTTTAAAAAATTAAGATTAAATT-AAAA--TTCAAACAAAGCAATT-GTATTAATTTA
1 AATAGATTTTTAAAAAATAAAGATTAAATTAAAAATTTTC-AACAAAGCAATTAAT-TTAATTTA
* * * * *
10157952 TAATATTAAAAATCATTAGTATTTA-ATTTTATTATAGTATGATTTTTTTTAG-AAAAATATCTA
64 TAATATTAAAAACCATTAGCATTTATATTTTATTATAGTATGA--TTTATTAGTAAAAATATTTT
*
10158015 TTTGCCTTTTG-AAAA-AAAA
127 TTTG--TTTTGTAAAATAGAA
* * * * * *
10158034 AAGAGTTTTTTAAAAAAGTAAA-ATTAAATTAAAAAATTGCAACAAAGTAATTAATTTCATTTAT
1 AATAGATTTTTAAAAAA-TAAAGATTAAATTAAAAATTTTCAACAAAGCAATTAATTTAATTTAT
*
10158098 AATATTAAAAACCATTAGCATTTATTTTTTATTATAGTATGATTTATTAGTAAAATATATTTTTT
65 AATATTAAAAACCATTAGCATTTATATTTTATTATAGTATGATTTATTAGTAAAA-ATATTTTTT
10158163 TGTTTTGTAAAATAGAA
129 TGTTTTGTAAAATAGAA
*
10158180 AATAGATTTTT-AAAAATAAAGATTAAA-TAAAAATTTTCAACAAAGAAATTAATTTAATTTATA
1 AATAGATTTTTAAAAAATAAAGATTAAATTAAAAATTTTCAACAAAGCAATTAATTTAATTTATA
* * * * *
10158243 ATATCAAAAGCCA-TAGCATTTATATTTT-TTA-A-TATAAATTATTAGT-AAAATATTTTTCT-
66 ATATTAAAAACCATTAGCATTTATATTTTATTATAGTATGATTTATTAGTAAAAATATTTTTTTG
10158302 TTTT-T-AAATAGAA
131 TTTTGTAAAATAGAA
* * * *
10158315 AATAGCTTTCTCAAAAATTAAG-TCTAAATTAAAAATTTTCAACAAAGCAATTA
1 AATAGATTTTTAAAAAATAAAGAT-TAAATTAAAAATTTTCAACAAAGCAATTA
10158368 TGCACGCATT
Statistics
Matches: 289, Mismatches: 31, Indels: 34
0.82 0.09 0.10
Matches are distributed among these distances:
135 18 0.06
136 14 0.05
137 27 0.09
138 9 0.03
139 3 0.01
140 12 0.04
141 1 0.00
142 3 0.01
143 36 0.12
144 66 0.23
145 60 0.21
146 40 0.14
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.41
Consensus pattern (145 bp):
AATAGATTTTTAAAAAATAAAGATTAAATTAAAAATTTTCAACAAAGCAATTAATTTAATTTATA
ATATTAAAAACCATTAGCATTTATATTTTATTATAGTATGATTTATTAGTAAAAATATTTTTTTG
TTTTGTAAAATAGAA
Found at i:10159591 original size:21 final size:21
Alignment explanation
Indices: 10159550--10159594 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
10159540 ACGAGGCCAA
**
10159550 AAAATTCTTCGATGGTGTCCT
1 AAAATTCTTCGATGGACTCCT
*
10159571 AAAATTCTTCGATTGACTCCT
1 AAAATTCTTCGATGGACTCCT
10159592 AAA
1 AAA
10159595 GTCTTTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (21 bp):
AAAATTCTTCGATGGACTCCT
Found at i:10161069 original size:144 final size:144
Alignment explanation
Indices: 10160906--10161178 Score: 309
Period size: 144 Copynumber: 1.9 Consensus size: 144
10160896 ACATTTAAAT
* * *
10160906 ATTATTTTATGAATGTTGATATATCAAAAACCCTGATTGCACCTAGGAAA-GTATGAAATCACCA
1 ATTATTTTATGAATGTTGATACATCAAAAACCCTGATCGCACCT-CGAAATGTATGAAATCACCA
** * * **
10160970 AAATATCC-TTAAGGGATATTTTTATAATTTGACCTTTCCGAGGTTGATTTTTTAC-AAAACGTT
65 AAATATCCTTTAAAAG-TATTTTTATAATTTGACATTTCCAAAATTGATTTTTTACGAAAAC-TT
10161033 TTGGGTCATGTTTTTAA
128 TTGGGTCATGTTTTTAA
** * * ** * * * *
10161050 ATTATTTTATGTTTTTTGATGCATTGAAAACCTTGATCGCACCTCGAAATGTGTGAAATTATCAA
1 ATTATTTTATGAATGTTGATACATCAAAAACCCTGATCGCACCTCGAAATGTATGAAATCACCAA
* *
10161115 AATATCCTTTAAAAGTATTTTTGTAATTTGACATTTTCAAAATTGATTTTTTACGAAAACTTTT
66 AATATCCTTTAAAAGTATTTTTATAATTTGACATTTCCAAAATTGATTTTTTACGAAAACTTTT
10161179 AGATCATTTC
Statistics
Matches: 105, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
143 4 0.04
144 91 0.87
145 10 0.10
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (144 bp):
ATTATTTTATGAATGTTGATACATCAAAAACCCTGATCGCACCTCGAAATGTATGAAATCACCAA
AATATCCTTTAAAAGTATTTTTATAATTTGACATTTCCAAAATTGATTTTTTACGAAAACTTTTG
GGTCATGTTTTTAA
Found at i:10162307 original size:6 final size:6
Alignment explanation
Indices: 10162298--10162413 Score: 70
Period size: 7 Copynumber: 17.5 Consensus size: 6
10162288 ATCCAAATCT
*
10162298 TAAACC TAAATCGTC TAAACC TAAACCC TAAATAC TAAACC TTAAACC
1 TAAACC TAAA-C--C TAAACC TAAA-CC TAAA-CC TAAACC -TAAACC
* * * * *
10162346 AAAACC TAATTCC TAAACC TAATCC TTAAACC TAAATC TCAATCC TAAACCC
1 TAAACC TAA-ACC TAAACC TAAACC -TAAACC TAAACC T-AAACC TAAA-CC
*
10162398 TAAACTC TAACCC TAA
1 TAAAC-C TAAACC TAA
10162414 CTCTAGACCC
Statistics
Matches: 86, Mismatches: 14, Indels: 20
0.72 0.12 0.17
Matches are distributed among these distances:
6 37 0.43
7 43 0.50
8 1 0.01
9 5 0.06
ACGTcount: A:0.44, C:0.31, G:0.01, T:0.24
Consensus pattern (6 bp):
TAAACC
Found at i:10162308 original size:13 final size:13
Alignment explanation
Indices: 10162279--10162378 Score: 62
Period size: 13 Copynumber: 7.5 Consensus size: 13
10162269 ATGCATTCCA
10162279 AAACCTTAAATCC-
1 AAACCTTAAA-CCT
*
10162292 AAATCTTAAACCT
1 AAACCTTAAACCT
*
10162305 AAATCGTCTAAACCT
1 AAA-CCT-TAAACCT
* *
10162320 AAACCCTAAATACT
1 AAACCTTAAA-CCT
*
10162334 AAACCTTAAACCA
1 AAACCTTAAACCT
*
10162347 AAACC-TAATTCCT
1 AAACCTTAA-ACCT
*
10162360 AAACC-TAATCCTT
1 AAACCTTAAACC-T
10162373 AAACCT
1 AAACCT
10162379 AAATCTCAAT
Statistics
Matches: 69, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
12 8 0.12
13 38 0.55
14 13 0.19
15 10 0.14
ACGTcount: A:0.45, C:0.29, G:0.01, T:0.25
Consensus pattern (13 bp):
AAACCTTAAACCT
Found at i:10162329 original size:7 final size:7
Alignment explanation
Indices: 10162312--10162429 Score: 54
Period size: 7 Copynumber: 18.0 Consensus size: 7
10162302 CCTAAATCGT
10162312 CTAAA-C
1 CTAAACC
10162318 CTAAACC
1 CTAAACC
**
10162325 CTAAATA
1 CTAAACC
10162332 CTAAACC
1 CTAAACC
*
10162339 TTAAA-C
1 CTAAACC
*
10162345 C-AAAAC
1 CTAAACC
**
10162351 CTAATTC
1 CTAAACC
10162358 CTAAA-C
1 CTAAACC
*
10162364 CTAATCC
1 CTAAACC
*
10162371 TTAAA-C
1 CTAAACC
*
10162377 CTAAA-T
1 CTAAACC
* *
10162383 CTCAATC
1 CTAAACC
10162390 CTAAACC
1 CTAAACC
*
10162397 CTAAACT
1 CTAAACC
10162404 CT-AACC
1 CTAAACC
*
10162410 CT-AACT
1 CTAAACC
*
10162416 CTAGACC
1 CTAAACC
10162423 CTAAACC
1 CTAAACC
10162430 AACCATTAAA
Statistics
Matches: 82, Mismatches: 24, Indels: 11
0.70 0.21 0.09
Matches are distributed among these distances:
5 3 0.04
6 32 0.39
7 47 0.57
ACGTcount: A:0.42, C:0.34, G:0.01, T:0.23
Consensus pattern (7 bp):
CTAAACC
Found at i:10162391 original size:20 final size:19
Alignment explanation
Indices: 10162298--10162413 Score: 74
Period size: 19 Copynumber: 5.8 Consensus size: 19
10162288 ATCCAAATCT
10162298 TAAACCTAAATCGTCTAAA-CC
1 TAAACCT-AATC--CTAAACCC
* *
10162319 TAAACCCTAAATACTAAACCT
1 TAAA-CCT-AATCCTAAACCC
* * **
10162340 TAAACCAAAACCTAATTCC
1 TAAACCTAATCCTAAACCC
10162359 TAAACCTAATCCTTAAA-CC
1 TAAACCTAATCC-TAAACCC
*
10162378 TAAATCTCAATCCTAAACCC
1 TAAACCT-AATCCTAAACCC
*
10162398 TAAACTCTAACCCTAA
1 TAAAC-CTAATCCTAA
10162414 CTCTAGACCC
Statistics
Matches: 75, Mismatches: 14, Indels: 13
0.74 0.14 0.13
Matches are distributed among these distances:
19 29 0.39
20 28 0.37
21 11 0.15
22 7 0.09
ACGTcount: A:0.44, C:0.31, G:0.01, T:0.24
Consensus pattern (19 bp):
TAAACCTAATCCTAAACCC
Found at i:10162392 original size:32 final size:32
Alignment explanation
Indices: 10162314--10162402 Score: 90
Period size: 32 Copynumber: 2.7 Consensus size: 32
10162304 TAAATCGTCT
** *
10162314 AAACCTAAACCCTAAATACTAAACCTTAAACCA
1 AAACCTAATTCCTAAA-CCTAAACCTTAAACCA
* *
10162347 AAACCTAATTCCTAAACCTAATCCTTAAACCT
1 AAACCTAATTCCTAAACCTAAACCTTAAACCA
*
10162379 AAATCTCAA-TCCTAAACCCTAAAC
1 AAACCT-AATTCCTAAA-CCTAAAC
10162403 TCTAACCCTA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
32 25 0.53
33 22 0.47
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.22
Consensus pattern (32 bp):
AAACCTAATTCCTAAACCTAAACCTTAAACCA
Found at i:10162409 original size:13 final size:13
Alignment explanation
Indices: 10162393--10162428 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
10162383 CTCAATCCTA
10162393 AACCCTAAACTCT
1 AACCCTAAACTCT
10162406 AACCCT-AACTCT
1 AACCCTAAACTCT
10162418 AGACCCTAAAC
1 A-ACCCTAAAC
10162429 CAACCATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 7 0.33
13 11 0.52
14 3 0.14
ACGTcount: A:0.39, C:0.39, G:0.03, T:0.19
Consensus pattern (13 bp):
AACCCTAAACTCT
Found at i:10165411 original size:23 final size:25
Alignment explanation
Indices: 10165385--10165435 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
10165375 AATAAATTGT
10165385 TTTGCTTT-AAAA-AAAAAA-AAAGA
1 TTTGCTTTCAAAAGAAAAAAGAAA-A
10165408 TTTGCTTTCAAAAGAAAAAAGAAAA
1 TTTGCTTTCAAAAGAAAAAAGAAAA
10165433 TTT
1 TTT
10165436 TGATTTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
23 8 0.32
24 4 0.16
25 10 0.40
26 3 0.12
ACGTcount: A:0.55, C:0.06, G:0.10, T:0.29
Consensus pattern (25 bp):
TTTGCTTTCAAAAGAAAAAAGAAAA
Found at i:10165872 original size:9 final size:9
Alignment explanation
Indices: 10165858--10165885 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
10165848 AAGAGCAAAT
10165858 GACTTAAAA
1 GACTTAAAA
10165867 GACTTAAAA
1 GACTTAAAA
10165876 GACTTAAAA
1 GACTTAAAA
10165885 G
1 G
10165886 GTTGAATAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.54, C:0.11, G:0.14, T:0.21
Consensus pattern (9 bp):
GACTTAAAA
Found at i:10167857 original size:14 final size:12
Alignment explanation
Indices: 10167809--10167874 Score: 50
Period size: 13 Copynumber: 5.6 Consensus size: 12
10167799 CAAAATTTTT
10167809 TAAAAATAAA-A
1 TAAAAATAAATA
* * *
10167820 TAAAATTTATTGA
1 TAAAAATAAAT-A
10167833 TAAAAATAAATA
1 TAAAAATAAATA
10167845 TAAAGAATAAA-A
1 TAAA-AATAAATA
10167857 TATAAAAT--ATA
1 TA-AAAATAAATA
10167868 TAAAAAT
1 TAAAAAT
10167875 TTTGTTTTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
10 6 0.14
11 10 0.23
12 11 0.25
13 17 0.39
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (12 bp):
TAAAAATAAATA
Found at i:10167955 original size:53 final size:53
Alignment explanation
Indices: 10167879--10168037 Score: 171
Period size: 53 Copynumber: 3.0 Consensus size: 53
10167869 AAAAATTTTG
* * * *
10167879 TTTTAAAAATGCTAAGGATAAAGTTGAAATATCAATATTTTCTTAAAATAAAA
1 TTTTGAAAATGTTTAGGAAAAAGTTGAAATATCAATATTTTCTTAAAATAAAA
* * *
10167932 TTTTGAAAATGTTTAGGAAAAAGTTTAAATATCAAT-TTGTCCTTAAATTAAAA
1 TTTTGAAAATGTTTAGGAAAAAGTTGAAATATCAATATT-TTCTTAAAATAAAA
* * * *
10167985 TTTTGAAAATATTTAGAAAAAAATTGAAATAT-AA-ACTTTTCCTAAAACTAAAA
1 TTTTGAAAATGTTTAGGAAAAAGTTGAAATATCAATA-TTTTCTTAAAA-TAAAA
10168038 AATAAAAATT
Statistics
Matches: 88, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
52 10 0.11
53 78 0.89
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.36
Consensus pattern (53 bp):
TTTTGAAAATGTTTAGGAAAAAGTTGAAATATCAATATTTTCTTAAAATAAAA
Found at i:10174654 original size:574 final size:583
Alignment explanation
Indices: 10173561--10175351 Score: 2859
Period size: 625 Copynumber: 3.0 Consensus size: 583
10173551 TAAAACGTTA
* *
10173561 TATTGTGTATTGGTAGATAGAGGAAGAGAAGGCATTGAAGCAATTGAGAAGGACAATGGTTCCCC
1 TATTGAGTATTGGTAGATAGAGGAAGAGAAGGCATTGAAGCAATTGAGAAGGACAGTGGTTCCCC
*
10173626 ATGCTAGGCCTCTTCCCAAGTTTGACCATCCTTTCTGCCCACAAAAGTGAGAATGTAGCAATATC
66 ATGCTAGGCCTCTTCCCAAGTTTGACCATCCTTTCTGCCCACAAAAGTGAGAAAGTAGCAATATC
* *
10173691 TTGGCAGTATTCTTCATTCA-TTTTTTTCCTTTTTGGCCACTATCCTCAATTGATTGTGTATCGC
131 TTGGCGGTATTCTTCATTCATTTTTTTTCTTTTTTGGCCACTATCCTCAATTGATTGTGTATCGC
10173755 CCAGGTCATCCAAGGAAACAACTAAACCCAAATCACCACATCTACGTGTTTTCCAAAGAAAAGAA
196 CCAGGTCATCCAAGGAAACAACTAAACCCAAATCACCACATCTACGTGTTTTCCAAAGAAAAGAA
*
10173820 AGGAGGAAAATGCTCACCGCCGCTGCAACTTCCAGTCCCGCCACTCTTATGAGGTGATTTTGGTT
261 AGGAGGAAAATGCTCACCGCCGCTGCAACTTCCAGTCCCGTCACTCTTATGAGGTGATTTTGGTT
* *
10173885 CGAGGAAAAGAAGGCAGGCGGGCTCAGGGTTGTTGTTCAAGAACTTTTGAACCGCTGTGAAACAA
326 CGAGGAAACGACGGCAGGCGGGCTCAGGGTTGTTGTTCAAGAACTTTTGAACCGCTGTGAAACAA
10173950 CTAACTCATTGGACCCATTAACTGTGACATTGCAGATTCATTTCTGTACTCTTTGTACCATTAAA
391 CTAACTCATTGGACCCATTAACTGTGACATTGCAGATTCATTTCTGTACTCTTTGTACCATTAAA
10174015 TGCAAAATATGTAGTAAAATATTCCTTTGTACCATTTCATTAGACTCAAAATTTCATTAGAATTT
456 TGCAAAATATGTAGTAAAATATTCCTTTGTACCATTTCATTAGACTCAAAATTTCATTAGAATTT
10174080 TTTTTCTCCAGAATTGCA-C-C-C-T-T-TTTTCTCATTTAATTTGATCGTCGT-AC-A-AA-T
521 TTTTTCTCCAGAATTGCATCACTCATATCTTTTCTCATTTAA-TTGATCGTCGTAACTACAACT
10174134 TATTGAGTATTGGTAGATAGAGGAAGAGAAGGCATTGAAGCAATTGAGAAGGACAGTGGTTCCCC
1 TATTGAGTATTGGTAGATAGAGGAAGAGAAGGCATTGAAGCAATTGAGAAGGACAGTGGTTCCCC
*
10174199 ATGCTAGGCCTCTTCCCAAGTTTGACCATCCTTTCTGCCCACAAAAGTGAGAAAGTAGCAATGTC
66 ATGCTAGGCCTCTTCCCAAGTTTGACCATCCTTTCTGCCCACAAAAGTGAGAAAGTAGCAATATC
10174264 TTGGCGGTATTCTTCATTCATTTTTTTTCTTTTTTGGCCACTATCCTCAATTGATTGTGTATCGC
131 TTGGCGGTATTCTTCATTCATTTTTTTTCTTTTTTGGCCACTATCCTCAATTGATTGTGTATCGC
10174329 CCAGGTCATCCAAGGAAACAACTAAACCCAAATCACCACATCTACGTGTTTTCCAAAGAAAAGAA
196 CCAGGTCATCCAAGGAAACAACTAAACCCAAATCACCACATCTACGTGTTTTCCAAAGAAAAGAA
10174394 AGGAGGAAAATGCTCACCGCCGCTGCAACTTCCAGTCCCGTCACTCTTATGAGGTGATTTTGGTT
261 AGGAGGAAAATGCTCACCGCCGCTGCAACTTCCAGTCCCGTCACTCTTATGAGGTGATTTTGGTT
10174459 CGAGGAAACGACGGCAGGCGGGCTCAGGGTTGTTGTTCAAGAACTTTTGAACCGCTGTGAAACAA
326 CGAGGAAACGACGGCAGGCGGGCTCAGGGTTGTTGTTCAAGAACTTTTGAACCGCTGTGAAACAA
10174524 CTAACTCATTGGACCCATTAACTGTGACATTGCAGATTCATTTCTGTACTCTTTGTACCATTAAA
391 CTAACTCATTGGACCCATTAACTGTGACATTGCAGATTCATTTCTGTACTCTTTGTACCATTAAA
10174589 TGCAAAATATGTAGTAAAATATTCCTTTGTACCATTTCATTAGACTCAAAATTTCATTAGAATTT
456 TGCAAAATATGTAGTAAAATATTCCTTTGTACCATTTCATTAGACTCAAAATTTCATTAGAATTT
10174654 TTTTTCTCCAGAATTGCAATCAGCTCTATGAACCTCTTTTCTCATTTAATTGATCGTCGTACAAC
521 TTTTTCTCCAGAATTGC-ATCA-CTC-AT--A--TCTTTTCTCATTTAATTGATCGTCG------
10174719 TACAACTTTCGGATCTTCCAGTGTACTTTTCT
573 T--AAC--T---A-----CA----A-----CT
*
10174751 CCAAAAACTATTGAGTATTGGTAGATAGAGGAAGAGAAGGCGTTGAAGCAATTGAGAAGGACAGT
1 --------TATTGAGTATTGGTAGATAGAGGAAGAGAAGGCATTGAAGCAATTGAGAAGGACAGT
* *
10174816 TGTTCCCCATGCTAGGCCTCTTCCCAAGTTTGACCATCCTTTCCGCCCACAAAAGTGAGAAAGTA
58 GGTTCCCCATGCTAGGCCTCTTCCCAAGTTTGACCATCCTTTCTGCCCACAAAAGTGAGAAAGTA
*
10174881 GCAATATCTTGGCGGTATTCTTCATTCATTTATTTTCTTTTTTGGCCACTATCCTCAATTGATTG
123 GCAATATCTTGGCGGTATTCTTCATTCATTTTTTTTCTTTTTTGGCCACTATCCTCAATTGATTG
* * *
10174946 TGTATCGCCCAGGTCATCCAAGGAAACAACTAGACCCAAATCACCACATCTACATGTCTTCCAAA
188 TGTATCGCCCAGGTCATCCAAGGAAACAACTAAACCCAAATCACCACATCTACGTGTTTTCCAAA
*
10175011 TAAAAGAAAGGAGGAAAATGCTCACCGCCGCTGCAACTTCCAGTCCCGTCACTCTTATGAGGTGA
253 GAAAAGAAAGGAGGAAAATGCTCACCGCCGCTGCAACTTCCAGTCCCGTCACTCTTATGAGGTGA
10175076 TTTTGGTTCGAGGAAACGACGGCAGGCGGGCTCAGGGTTGTTGTTCAAGAACTTTTGAACCGCTG
318 TTTTGGTTCGAGGAAACGACGGCAGGCGGGCTCAGGGTTGTTGTTCAAGAACTTTTGAACCGCTG
10175141 TGAAACAACTAACTCATTGGACCCATTAACTGTGACATTGCAGATTCATTTCTGTACTCTTTGTA
383 TGAAACAACTAACTCATTGGACCCATTAACTGTGACATTGCAGATTCATTTCTGTACTCTTTGTA
10175206 CCATTAAATGCAAAATATGTAGTAAAATATTCCTTTGTACCATTTCATTAGACTCAAAATTTCAT
448 CCATTAAATGCAAAATATGTAGTAAAATATTCCTTTGTACCATTTCATTAGACTCAAAATTTCAT
*
10175271 TAGAA-TTTTTTTCTCCAGAATTGCAATCAGCTCTATGAACCCTTTTTTCTCATTTAATTGATCG
513 TAGAATTTTTTTTCTCCAGAATTGC-ATCA-CTC-AT--A---TCTTTTCTCATTTAATTGATCG
10175335 TCGTACAACTACAACT
570 TCGT--AACTACAACT
10175351 T
1 T
10175352 TCGGATCTTC
Statistics
Matches: 1145, Mismatches: 19, Indels: 89
0.91 0.02 0.07
Matches are distributed among these distances:
573 145 0.13
574 382 0.33
575 1 0.00
576 1 0.00
578 1 0.00
579 1 0.00
581 1 0.00
586 11 0.01
587 13 0.01
592 2 0.00
595 2 0.00
600 2 0.00
601 1 0.00
605 1 0.00
607 1 0.00
609 2 0.00
611 1 0.00
614 1 0.00
617 2 0.00
619 6 0.01
624 34 0.03
625 534 0.47
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (583 bp):
TATTGAGTATTGGTAGATAGAGGAAGAGAAGGCATTGAAGCAATTGAGAAGGACAGTGGTTCCCC
ATGCTAGGCCTCTTCCCAAGTTTGACCATCCTTTCTGCCCACAAAAGTGAGAAAGTAGCAATATC
TTGGCGGTATTCTTCATTCATTTTTTTTCTTTTTTGGCCACTATCCTCAATTGATTGTGTATCGC
CCAGGTCATCCAAGGAAACAACTAAACCCAAATCACCACATCTACGTGTTTTCCAAAGAAAAGAA
AGGAGGAAAATGCTCACCGCCGCTGCAACTTCCAGTCCCGTCACTCTTATGAGGTGATTTTGGTT
CGAGGAAACGACGGCAGGCGGGCTCAGGGTTGTTGTTCAAGAACTTTTGAACCGCTGTGAAACAA
CTAACTCATTGGACCCATTAACTGTGACATTGCAGATTCATTTCTGTACTCTTTGTACCATTAAA
TGCAAAATATGTAGTAAAATATTCCTTTGTACCATTTCATTAGACTCAAAATTTCATTAGAATTT
TTTTTCTCCAGAATTGCATCACTCATATCTTTTCTCATTTAATTGATCGTCGTAACTACAACT
Found at i:10176561 original size:16 final size:16
Alignment explanation
Indices: 10176537--10176583 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
10176527 AGTCCAGAAT
10176537 CCAAAATGACCTGAAC
1 CCAAAATGACCTGAAC
* **
10176553 CCAAGATGACCCAAAC
1 CCAAAATGACCTGAAC
*
10176569 TCAAAATGACCTGAA
1 CCAAAATGACCTGAA
10176584 TCTTTTTATC
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.45, C:0.30, G:0.13, T:0.13
Consensus pattern (16 bp):
CCAAAATGACCTGAAC
Found at i:10183150 original size:12 final size:12
Alignment explanation
Indices: 10183133--10183159 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
10183123 AATATAAATA
10183133 TGTTACTAAGTT
1 TGTTACTAAGTT
10183145 TGTTACTAAGTT
1 TGTTACTAAGTT
10183157 TGT
1 TGT
10183160 CATACTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (12 bp):
TGTTACTAAGTT
Found at i:10184057 original size:31 final size:31
Alignment explanation
Indices: 10184021--10184098 Score: 129
Period size: 31 Copynumber: 2.5 Consensus size: 31
10184011 TGGAGAGACT
*
10184021 AAATTTTAAATTTTGTGCGAGTATAGGGACC
1 AAATTTTAAATTTTATGCGAGTATAGGGACC
* *
10184052 AAATTTTAAATTTCATGCGAGTATAGGGACT
1 AAATTTTAAATTTTATGCGAGTATAGGGACC
10184083 AAATTTTAAATTTTAT
1 AAATTTTAAATTTTAT
10184099 ATAAGTACAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.40
Consensus pattern (31 bp):
AAATTTTAAATTTTATGCGAGTATAGGGACC
Found at i:10190706 original size:2 final size:2
Alignment explanation
Indices: 10190699--10190723 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10190689 TCTGACAAAA
10190699 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
10190724 AATGTTCAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10193630 original size:19 final size:19
Alignment explanation
Indices: 10193582--10193632 Score: 54
Period size: 21 Copynumber: 2.7 Consensus size: 19
10193572 AATGATAATC
10193582 ATAATCAAA-T-TTATATT
1 ATAATCAAATTATTATATT
10193599 -TATATCATTAATTATTATATT
1 ATA-ATCA--AATTATTATATT
10193620 ATAATCAAATTAT
1 ATAATCAAATTAT
10193633 AATCATTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
16 2 0.07
17 4 0.14
19 8 0.29
20 1 0.04
21 11 0.39
22 2 0.07
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49
Consensus pattern (19 bp):
ATAATCAAATTATTATATT
Found at i:10194362 original size:36 final size:38
Alignment explanation
Indices: 10194286--10194364 Score: 92
Period size: 38 Copynumber: 2.1 Consensus size: 38
10194276 ATCAATGCAC
* *
10194286 AATTAATAAAATTATTTATTATTAATAAATAATTAGTTT
1 AATTAATAAAATTATTTATTATGAATAAAAAATTA-TTT
*
10194325 AATTAATTAAATTTATTT-TT-TGAATAAAAAATT-TTT
1 AATTAA-TAAAATTATTTATTATGAATAAAAAATTATTT
10194361 AATT
1 AATT
10194365 TAAATTTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
36 7 0.19
38 11 0.31
39 8 0.22
40 10 0.28
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.51
Consensus pattern (38 bp):
AATTAATAAAATTATTTATTATGAATAAAAAATTATTT
Found at i:10200336 original size:22 final size:18
Alignment explanation
Indices: 10200311--10200367 Score: 60
Period size: 18 Copynumber: 2.9 Consensus size: 18
10200301 TTTATTGCAA
10200311 TTAATTTATGTTTGATATTTGT
1 TTAATTTAT-TTT--TATTT-T
*
10200333 TTAAATTATTTTTATTTT
1 TTAATTTATTTTTATTTT
*
10200351 TTAATTAATTTTTATTT
1 TTAATTTATTTTTATTT
10200368 ATTTTCATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 16 0.50
19 5 0.16
21 3 0.09
22 8 0.25
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.68
Consensus pattern (18 bp):
TTAATTTATTTTTATTTT
Found at i:10200362 original size:17 final size:20
Alignment explanation
Indices: 10200326--10200367 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
10200316 TTATGTTTGA
10200326 TATTTGTTTAAATT-ATTTT
1 TATTTGTTTAAATTAATTTT
10200345 TATTT-TTT-AATTAATTTT
1 TATTTGTTTAAATTAATTTT
10200363 TATTT
1 TATTT
10200368 ATTTTCATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 4 0.18
18 13 0.59
19 5 0.23
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (20 bp):
TATTTGTTTAAATTAATTTT
Found at i:10205027 original size:42 final size:42
Alignment explanation
Indices: 10204967--10205051 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
10204957 CGAGTTCAAA
* *
10204967 CGAGTATCAAGTTGTGAGTCGAGAGTTGAGTTCAAGCTCGAG
1 CGAGTATCAAGTTATGAGTCGAGAGTTGAGCTCAAGCTCGAG
* *
10205009 CGAGTATCAAGTTATGAGTTGAGAGTTGAGCTCGAGCTCGAG
1 CGAGTATCAAGTTATGAGTCGAGAGTTGAGCTCAAGCTCGAG
10205051 C
1 C
10205052 TTTTCACTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.26, C:0.15, G:0.33, T:0.26
Consensus pattern (42 bp):
CGAGTATCAAGTTATGAGTCGAGAGTTGAGCTCAAGCTCGAG
Found at i:10205957 original size:14 final size:14
Alignment explanation
Indices: 10205938--10205964 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10205928 TCATTAACTC
10205938 TATTAAAAATGTTT
1 TATTAAAAATGTTT
10205952 TATTAAAAATGTT
1 TATTAAAAATGTT
10205965 GACGTGGATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (14 bp):
TATTAAAAATGTTT
Found at i:10208982 original size:26 final size:27
Alignment explanation
Indices: 10208951--10209003 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
10208941 ATTATAAGAA
10208951 AAAAGG-GATTCTTAATAGGCAAGTTT
1 AAAAGGAGATTCTTAATAGGCAAGTTT
10208977 AAAAGGAGATTCTTAATAGGCAAGTTT
1 AAAAGGAGATTCTTAATAGGCAAGTTT
10209004 GACTTATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 6 0.23
27 20 0.77
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.30
Consensus pattern (27 bp):
AAAAGGAGATTCTTAATAGGCAAGTTT
Found at i:10214045 original size:21 final size:21
Alignment explanation
Indices: 10214008--10214047 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
10213998 ATGCAATATA
*
10214008 TTAAAAATCAAATAAATAAGT
1 TTAAAAATCAAAGAAATAAGT
10214029 TTAAAAA-CATAAGAAATAA
1 TTAAAAATCA-AAGAAATAA
10214048 TATCATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.25
Consensus pattern (21 bp):
TTAAAAATCAAAGAAATAAGT
Found at i:10221302 original size:4 final size:4
Alignment explanation
Indices: 10221288--10221327 Score: 62
Period size: 4 Copynumber: 9.8 Consensus size: 4
10221278 CTGCTTATCT
*
10221288 TTTA TTTTA TTTA TTTA TTTA TTTA TTTC TTTA TTTA TTT
1 TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
10221328 TTTTTACATT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
4 29 0.88
5 4 0.12
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:10222442 original size:24 final size:24
Alignment explanation
Indices: 10222407--10222455 Score: 57
Period size: 24 Copynumber: 2.0 Consensus size: 24
10222397 TTTTTTTTTA
*
10222407 ATTTTTTGAATAGTTT-TTTATATT
1 ATTTTTTGAATA-TTTATGTATATT
10222431 ATTTTATT-AATATTTATGTATATT
1 ATTTT-TTGAATATTTATGTATATT
10222455 A
1 A
10222456 AAATGTTTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
23 3 0.14
24 17 0.77
25 2 0.09
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (24 bp):
ATTTTTTGAATATTTATGTATATT
Found at i:10236991 original size:21 final size:21
Alignment explanation
Indices: 10236961--10237008 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
10236951 ATAAAACAAT
*
10236961 AATATTAAT-AATTCAATAAAA
1 AATATCAATAAATT-AATAAAA
*
10236982 AATATCAATAGAATTTATAAAA
1 AATATCAATA-AATTAATAAAA
10237004 AATAT
1 AATAT
10237009 ATAAAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 8 0.35
22 11 0.48
23 4 0.17
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.33
Consensus pattern (21 bp):
AATATCAATAAATTAATAAAA
Found at i:10240727 original size:16 final size:17
Alignment explanation
Indices: 10240695--10240729 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
10240685 ATAAGATAAT
*
10240695 TTATTTATTGGTCAAAA
1 TTATTTATTGCTCAAAA
10240712 TTATTT-TTGCTCAAAA
1 TTATTTATTGCTCAAAA
10240728 TT
1 TT
10240730 TATATAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (17 bp):
TTATTTATTGCTCAAAA
Found at i:10240732 original size:17 final size:18
Alignment explanation
Indices: 10240692--10240732 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
10240682 ATGATAAGAT
*
10240692 AATTTATTTATTGGTCAA
1 AATTTATTTATTGCTCAA
10240710 AA-TTATTT-TTGCTCAA
1 AATTTATTTATTGCTCAA
10240726 AATTTAT
1 AATTTAT
10240733 ATAATTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 9 0.43
17 10 0.48
18 2 0.10
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.51
Consensus pattern (18 bp):
AATTTATTTATTGCTCAA
Found at i:10242252 original size:2 final size:2
Alignment explanation
Indices: 10242245--10242289 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
10242235 TATGCCTTTA
10242245 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
10242287 AG A
1 AG A
10242290 AATGGAATTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:10245237 original size:24 final size:26
Alignment explanation
Indices: 10245195--10245244 Score: 86
Period size: 24 Copynumber: 2.0 Consensus size: 26
10245185 TATTACTTAT
10245195 TATGAAAAAATTAAGAAATAAAACTG
1 TATGAAAAAATTAAGAAATAAAACTG
10245221 TATG-AAAAATTAA-AAATAAAACTG
1 TATGAAAAAATTAAGAAATAAAACTG
10245245 AATGTATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 11 0.46
25 9 0.38
26 4 0.17
ACGTcount: A:0.62, C:0.04, G:0.10, T:0.24
Consensus pattern (26 bp):
TATGAAAAAATTAAGAAATAAAACTG
Found at i:10251120 original size:25 final size:25
Alignment explanation
Indices: 10251070--10251121 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
10251060 AAATTTAAAC
**
10251070 ATATTTTATAATTTATATTGTATTT
1 ATATTTTATAATTTATATCATATTT
10251095 ATATTTTAATAATTTATATCAT-TTT
1 ATATTTT-ATAATTTATATCATATTT
10251120 AT
1 AT
10251122 GTATCAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (25 bp):
ATATTTTATAATTTATATCATATTT
Found at i:10251574 original size:42 final size:40
Alignment explanation
Indices: 10251528--10251622 Score: 97
Period size: 42 Copynumber: 2.4 Consensus size: 40
10251518 ATATTTTAAT
* *
10251528 TTAAATTATTAACTTA-A-TAAAAAATATTATATTTATATATAA
1 TTAAATTA-TAA-TTATATTAAAAAATAATAT-TTTATAAAT-A
* *
10251570 TTAAAATATCATTATATTAAAAAATAATATTTTATAAATA
1 TTAAATTATAATTATATTAAAAAATAATATTTTATAAATA
10251610 TTAAATTA-AATTA
1 TTAAATTATAATTA
10251623 AAATTATTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
39 4 0.09
40 11 0.24
41 11 0.24
42 19 0.42
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (40 bp):
TTAAATTATAATTATATTAAAAAATAATATTTTATAAATA
Found at i:10251645 original size:19 final size:19
Alignment explanation
Indices: 10251598--10251645 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
10251588 AAAAAATAAT
*
10251598 ATTTTATAAATATTAAATTA
1 ATTTTA-AATTATTAAATTA
* *
10251618 AATTAAAATTATTAAATTA
1 ATTTTAAATTATTAAATTA
10251637 ATTTTAAAT
1 ATTTTAAAT
10251646 CGATTTTAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
19 19 0.83
20 4 0.17
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
ATTTTAAATTATTAAATTA
Found at i:10251723 original size:2 final size:2
Alignment explanation
Indices: 10251716--10251743 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
10251706 ATCAAACAGA
10251716 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10251744 TAAATGATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10252550 original size:13 final size:12
Alignment explanation
Indices: 10252532--10252575 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
10252522 TTTAAATTCG
* *
10252532 TTTTTTTTTGTG
1 TTTTTTTTTTTA
10252544 TTTTTTTTTTTA
1 TTTTTTTTTTTA
10252556 TTTTTTATTTTTTA
1 -TTTTT-TTTTTTA
10252570 TTTTTT
1 TTTTTT
10252576 ATCATTGGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 11 0.39
13 10 0.36
14 7 0.25
ACGTcount: A:0.07, C:0.00, G:0.05, T:0.89
Consensus pattern (12 bp):
TTTTTTTTTTTA
Found at i:10252551 original size:14 final size:13
Alignment explanation
Indices: 10252532--10252575 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 13
10252522 TTTAAATTCG
*
10252532 TTTTTTTTTGTGTT
1 TTTTTTTTTAT-TT
10252546 TTTTTTTTTATTT
1 TTTTTTTTTATTT
10252559 TTTATTTTTTATTT
1 TTT-TTTTTTATTT
10252573 TTT
1 TTT
10252576 ATCATTGGCT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
13 5 0.18
14 23 0.82
ACGTcount: A:0.07, C:0.00, G:0.05, T:0.89
Consensus pattern (13 bp):
TTTTTTTTTATTT
Found at i:10252554 original size:7 final size:7
Alignment explanation
Indices: 10252544--10252577 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
10252534 TTTTTTTGTG
10252544 TTTTT-T
1 TTTTTAT
10252550 TTTTTAT
1 TTTTTAT
10252557 TTTTTAT
1 TTTTTAT
10252564 TTTTTAT
1 TTTTTAT
10252571 TTTTTAT
1 TTTTTAT
10252578 CATTGGCTGC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.19
7 22 0.81
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:10252561 original size:21 final size:21
Alignment explanation
Indices: 10252535--10252577 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
10252525 AAATTCGTTT
*
10252535 TTTTTTGTGTTTTT-TTTTTTA
1 TTTTTTAT-TTTTTATTTTTTA
10252556 TTTTTTATTTTTTATTTTTTA
1 TTTTTTATTTTTTATTTTTTA
10252577 T
1 T
10252578 CATTGGCTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.09, C:0.00, G:0.05, T:0.86
Consensus pattern (21 bp):
TTTTTTATTTTTTATTTTTTA
Found at i:10255535 original size:28 final size:30
Alignment explanation
Indices: 10255504--10255565 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
10255494 AATTTATAAT
*
10255504 TTAAA-TATCATATTAAAAAATTTTAAAA-
1 TTAAAGTATCACATTAAAAAATTTTAAAAC
* * *
10255532 TTAAAGTATTACATTATAAATTTTTAAAAC
1 TTAAAGTATCACATTAAAAAATTTTAAAAC
10255562 TTAA
1 TTAA
10255566 GTGTCAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 5 0.18
29 19 0.68
30 4 0.14
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.42
Consensus pattern (30 bp):
TTAAAGTATCACATTAAAAAATTTTAAAAC
Found at i:10258350 original size:10 final size:10
Alignment explanation
Indices: 10258337--10258496 Score: 91
Period size: 10 Copynumber: 16.0 Consensus size: 10
10258327 AAAAATTTTT
10258337 TAAAAAATTC
1 TAAAAAATTC
10258347 TAAAAAATT-
1 TAAAAAATTC
* *
10258356 AAAAAGAATTT
1 TAAAA-AATTC
* *
10258367 TATAAAATTT
1 TAAAAAATTC
10258377 TATAAAAATTC
1 TA-AAAAATTC
10258388 -AAGAAAATT-
1 TAA-AAAATTC
* * *
10258397 TTAAAAGTTA
1 TAAAAAATTC
10258407 TACAAAAATTC
1 TA-AAAAATTC
10258418 -AAAAAATTC
1 TAAAAAATTC
10258427 -AAATAAATTC
1 TAAA-AAATTC
*
10258437 TAAAAAATTG
1 TAAAAAATTC
** *
10258447 TAAAATTTTT
1 TAAAAAATTC
10258457 TAAAAAA-TC
1 TAAAAAATTC
10258466 -ATAAAAATTC
1 TA-AAAAATTC
* *
10258476 TAAATGAATTT
1 TAAA-AAATTC
10258487 TAAAAAATTC
1 TAAAAAATTC
10258497 ACAAAAACTT
Statistics
Matches: 116, Mismatches: 21, Indels: 26
0.71 0.13 0.16
Matches are distributed among these distances:
8 1 0.01
9 27 0.23
10 61 0.53
11 27 0.23
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (10 bp):
TAAAAAATTC
Found at i:10258358 original size:8 final size:9
Alignment explanation
Indices: 10258335--10258520 Score: 86
Period size: 10 Copynumber: 18.8 Consensus size: 9
10258325 AAAAAAATTT
10258335 TTTAAAAAA
1 TTTAAAAAA
10258344 TTCTAAAAAA
1 TT-TAAAAAA
*
10258354 TTAAAAAGAA
1 TTTAAAA-AA
*
10258364 TTTTATAAAAT
1 -TTTA-AAAAA
10258375 TTTATAAAAA
1 TTTA-AAAAA
*
10258385 TTCAAGAAAA
1 TTTAA-AAAA
* *
10258395 TTTTAAAAG
1 TTTAAAAAA
10258404 TTATACAAAAA
1 TT-TA-AAAAA
*
10258415 TTCAAAAAA
1 TTTAAAAAA
*
10258424 TTCAAATAAA
1 TTTAAA-AAA
10258434 TTCTAAAAAA
1 TT-TAAAAAA
**
10258444 TTGTAAAATTT
1 TT-TAAAA-AA
10258455 TTTAAAAAA
1 TTTAAAAAA
*
10258464 -TCATAAAAA
1 TTTA-AAAAA
*
10258473 TTCTAAATGAAT
1 TT-TAAA--AAA
10258485 TTTAAAAAA
1 TTTAAAAAA
*
10258494 TTCACAAAAA
1 TTTA-AAAAA
*
10258504 CTTAAAAATA
1 TTTAAAAA-A
10258514 TTTAAAA
1 TTTAAAA
10258521 TAAAAAAAAT
Statistics
Matches: 135, Mismatches: 25, Indels: 33
0.70 0.13 0.17
Matches are distributed among these distances:
8 2 0.01
9 37 0.27
10 69 0.51
11 20 0.15
12 7 0.05
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.33
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:10258360 original size:30 final size:29
Alignment explanation
Indices: 10258334--10258520 Score: 111
Period size: 30 Copynumber: 6.3 Consensus size: 29
10258324 AAAAAAAATT
10258334 TTTTAAAAAATTCTA-AAAAATTAAAAAGAA
1 TTTTAAAAAATTCTACAAAAATT-AAAA-AA
* * *
10258364 TTTTATAAAATTTTATAAAAATTCAAGAAAA
1 TTTTAAAAAATTCTACAAAAATT-AA-AAAA
* *
10258395 TTTT-AAAAGTTATACAAAAATTCAAAAAA
1 TTTTAAAAAATTCTACAAAAATT-AAAAAA
* **
10258424 -TTCAAATAAATTCTA-AAAAATTGTAAAATT
1 TTTTAAA-AAATTCTACAAAAA-T-TAAAAAA
* *
10258454 TTTTAAAAAA-TCATA-AAAATTCTAAATGAA
1 TTTTAAAAAATTC-TACAAAAAT-TAAA-AAA
10258484 TTTTAAAAAATTC-ACAAAAACTT-AAAAA
1 TTTTAAAAAATTCTACAAAAA-TTAAAAAA
10258512 TATTTAAAA
1 T-TTTAAAA
10258521 TAAAAAAAAT
Statistics
Matches: 124, Mismatches: 20, Indels: 27
0.73 0.12 0.16
Matches are distributed among these distances:
28 5 0.04
29 28 0.23
30 65 0.52
31 24 0.19
32 2 0.02
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.34
Consensus pattern (29 bp):
TTTTAAAAAATTCTACAAAAATTAAAAAA
Found at i:10258424 original size:9 final size:9
Alignment explanation
Indices: 10258410--10258445 Score: 54
Period size: 9 Copynumber: 3.8 Consensus size: 9
10258400 AAAGTTATAC
10258410 AAAAATTCA
1 AAAAATTCA
10258419 AAAAATTCA
1 AAAAATTCA
10258428 AATAAATTCTA
1 AA-AAATTC-A
10258439 AAAAATT
1 AAAAATT
10258446 GTAAAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 11 0.44
10 11 0.44
11 3 0.12
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (9 bp):
AAAAATTCA
Found at i:10258517 original size:29 final size:30
Alignment explanation
Indices: 10258408--10258520 Score: 94
Period size: 29 Copynumber: 3.8 Consensus size: 30
10258398 TAAAAGTTAT
*
10258408 ACAAAAATTC-AAAAA-ATTCAAATAAATTC
1 ACAAAAATTCTAAAAATATTTAAA-AAATTC
* * *
10258437 TA-AAAAATTGTAAAATTTTTTAAAAAA-TC
1 -ACAAAAATTCTAAAAATATTTAAAAAATTC
*
10258466 ATAAAAATTCTAAATGAAT-TTTAAAAAATTC
1 ACAAAAATTCTAAA--AATATTTAAAAAATTC
*
10258497 ACAAAAACT-TAAAAATATTTAAAA
1 ACAAAAATTCTAAAAATATTTAAAA
10258521 TAAAAAAAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
28 4 0.06
29 27 0.40
30 21 0.31
31 16 0.24
ACGTcount: A:0.59, C:0.08, G:0.02, T:0.31
Consensus pattern (30 bp):
ACAAAAATTCTAAAAATATTTAAAAAATTC
Found at i:10258558 original size:19 final size:19
Alignment explanation
Indices: 10258536--10258584 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
10258526 AAAATCTATT
*
10258536 TTTTTTAAAAT-GTTAAAAA
1 TTTTTAAAAATAG-TAAAAA
*
10258555 TTTTGAAAAATAGTAAAAA
1 TTTTTAAAAATAGTAAAAA
10258574 TTTTTCAAAAA
1 TTTTT-AAAAA
10258585 AATTCTGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 19 0.76
20 6 0.24
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.41
Consensus pattern (19 bp):
TTTTTAAAAATAGTAAAAA
Found at i:10258953 original size:21 final size:21
Alignment explanation
Indices: 10258926--10258974 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
10258916 TAAAAGTTTC
* *
10258926 ATTTTTATTTAATTTTTTGGA
1 ATTTTTATTAAATTTTTTAGA
*
10258947 TTTTTTATTAAATTTTTTAGA
1 ATTTTTATTAAATTTTTTAGA
10258968 ATTTTTA
1 ATTTTTA
10258975 GAAAATTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (21 bp):
ATTTTTATTAAATTTTTTAGA
Found at i:10258980 original size:21 final size:21
Alignment explanation
Indices: 10258936--10258982 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
10258926 ATTTTTATTT
* * **
10258936 AATTTTTTGGATTTTTTATTA
1 AATTTTTTAGAATTTTTAGAA
10258957 AATTTTTTAGAATTTTTAGAA
1 AATTTTTTAGAATTTTTAGAA
10258978 AATTT
1 AATTT
10258983 AAAATTATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.60
Consensus pattern (21 bp):
AATTTTTTAGAATTTTTAGAA
Found at i:10259034 original size:25 final size:26
Alignment explanation
Indices: 10258983--10259041 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
10258973 TAGAAAATTT
*
10258983 AAAATTATCAATTTTATAATTTTTAAA
1 AAAATT-TCAATTTTATAATTTCTAAA
10259010 AAAATTTCATATTTT-TAA-TTCTAAA
1 AAAATTTCA-ATTTTATAATTTCTAAA
10259035 AAAATTT
1 AAAATTT
10259042 TTAGAATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 13 0.43
26 6 0.20
27 11 0.37
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (26 bp):
AAAATTTCAATTTTATAATTTCTAAA
Found at i:10259057 original size:20 final size:21
Alignment explanation
Indices: 10259034--10259073 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
10259024 TTAATTCTAA
10259034 AAAAATTTTTAGAAT-TTTTC
1 AAAAATTTTTAGAATGTTTTC
*
10259054 AAAAATTTTTTGAATGTTTT
1 AAAAATTTTTAGAATGTTTT
10259074 AGAATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.53
Consensus pattern (21 bp):
AAAAATTTTTAGAATGTTTTC
Found at i:10259103 original size:29 final size:29
Alignment explanation
Indices: 10259041--10259132 Score: 71
Period size: 29 Copynumber: 3.1 Consensus size: 29
10259031 TAAAAAAATT
* *
10259041 TTTAGAATTT-TTCAAAAATTTTTT-GAATGT
1 TTTAGAATTTATT--AAAATTTTTTATAAT-A
10259071 TTTAGAATTTATTAAAATTTTTTATAATA
1 TTTAGAATTTATTAAAATTTTTTATAATA
* *** * *
10259100 TTTAAAAAAAATTTAAATTTTTTATTATA
1 TTTAGAATTTATTAAAATTTTTTATAATA
10259129 TTTA
1 TTTA
10259133 AAAAAAATTT
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
29 37 0.71
30 13 0.25
31 2 0.04
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.54
Consensus pattern (29 bp):
TTTAGAATTTATTAAAATTTTTTATAATA
Found at i:10259133 original size:29 final size:29
Alignment explanation
Indices: 10259085--10259184 Score: 137
Period size: 29 Copynumber: 3.3 Consensus size: 29
10259075 GAATTTATTA
10259085 AAATTTTTTATAATATTTAAAAAAAATTT
1 AAATTTTTTATAATATTTAAAAAAAATTT
*
10259114 AAATTTTTTATTATATTTAAAAAAAATTT
1 AAATTTTTTATAATATTTAAAAAAAATTT
* *
10259143 AAATTTTTTTATAATGTTGAAAAAATAATTT
1 AAA-TTTTTTATAATATTTAAAAAA-AATTT
*
10259174 AGAATTGTTTA
1 A-AATTTTTTA
10259185 AGAATTGTTT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
29 31 0.49
30 18 0.29
31 12 0.19
32 2 0.03
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (29 bp):
AAATTTTTTATAATATTTAAAAAAAATTT
Found at i:10259237 original size:9 final size:9
Alignment explanation
Indices: 10259223--10259266 Score: 54
Period size: 10 Copynumber: 4.7 Consensus size: 9
10259213 TTAATAAGTT
10259223 TTTTTAAAA
1 TTTTTAAAA
10259232 TTTTTAGAAA
1 TTTTTA-AAA
10259242 -TTTTAAAA
1 TTTTTAAAA
10259250 TATTTTAAGAA
1 T-TTTTAA-AA
10259261 TTTTTA
1 TTTTTA
10259267 TATTTAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
8 3 0.10
9 11 0.35
10 14 0.45
11 3 0.10
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:10259266 original size:10 final size:10
Alignment explanation
Indices: 10259174--10259266 Score: 52
Period size: 9 Copynumber: 9.0 Consensus size: 10
10259164 AAAATAATTT
10259174 AGAATTGTTTA
1 AGAATT-TTTA
10259185 AGAATTGTTT-
1 AGAATT-TTTA
10259195 A-AATTTTTA
1 AGAATTTTTA
*
10259204 ACTAATTTTTTA
1 A-GAA-TTTTTA
*
10259216 ATAAGTTTTTTTA
1 AGAA---TTTTTA
10259229 A-AATTTTT-
1 AGAATTTTTA
*
10259237 AGAAATTTTA
1 AGAATTTTTA
10259247 A-AATATTTTA
1 AGAAT-TTTTA
10259257 AGAATTTTTA
1 AGAATTTTTA
10259267 TATTTAAAAT
Statistics
Matches: 70, Mismatches: 2, Indels: 21
0.75 0.02 0.23
Matches are distributed among these distances:
8 4 0.06
9 18 0.26
10 13 0.19
11 18 0.26
12 9 0.13
13 8 0.11
ACGTcount: A:0.39, C:0.01, G:0.08, T:0.53
Consensus pattern (10 bp):
AGAATTTTTA
Found at i:10264503 original size:29 final size:30
Alignment explanation
Indices: 10264461--10264532 Score: 94
Period size: 30 Copynumber: 2.4 Consensus size: 30
10264451 CCATCTAGTC
* *
10264461 AAGGGCTCAATTGGGTTGAAAAT-ATGTTT
1 AAGGGCTCAATTGGGATGAAAATAATGGTT
*
10264490 AAGGGTTCAATT-GGATGAAAATAGATGGTT
1 AAGGGCTCAATTGGGATGAAAATA-ATGGTT
10264520 AAGGGCTCAATTG
1 AAGGGCTCAATTG
10264533 ATCCGAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 9 0.25
29 11 0.31
30 16 0.44
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (30 bp):
AAGGGCTCAATTGGGATGAAAATAATGGTT
Found at i:10269277 original size:10 final size:9
Alignment explanation
Indices: 10269265--10269339 Score: 51
Period size: 10 Copynumber: 7.2 Consensus size: 9
10269255 TTTATTAATT
10269265 AATAAAAAA
1 AATAAAAAA
10269274 TAATAAACAAA
1 -AATAAA-AAA
10269285 ACATAAACAAA
1 A-ATAAA-AAA
*
10269296 AAGAAAAAA
1 AATAAAAAA
10269305 AATAAAAGATTCA
1 AATAAAA-A---A
10269318 AATAAACAAA
1 AATAAA-AAA
10269328 AATGAAAAAA
1 AAT-AAAAAA
10269338 AA
1 AA
10269340 AGAAAATTTA
Statistics
Matches: 55, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
9 9 0.16
10 21 0.38
11 16 0.29
13 8 0.15
14 1 0.02
ACGTcount: A:0.77, C:0.07, G:0.04, T:0.12
Consensus pattern (9 bp):
AATAAAAAA
Found at i:10269306 original size:33 final size:33
Alignment explanation
Indices: 10269268--10269339 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
10269258 ATTAATTAAT
10269268 AAAAAATAATAA-ACAAAACATAAACAAAAA-GAA
1 AAAAAATAA-AAGACAAAA-ATAAACAAAAATGAA
***
10269301 AAAAAATAAAAGATTCAAATAAACAAAAATGAA
1 AAAAAATAAAAGACAAAAATAAACAAAAATGAA
10269334 AAAAAA
1 AAAAAA
10269340 AGAAAATTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
32 13 0.38
33 21 0.62
ACGTcount: A:0.78, C:0.07, G:0.04, T:0.11
Consensus pattern (33 bp):
AAAAAATAAAAGACAAAAATAAACAAAAATGAA
Found at i:10270750 original size:16 final size:15
Alignment explanation
Indices: 10270729--10270758 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
10270719 TCAATGAAGT
10270729 AAAAAAAACAAAAAAC
1 AAAAAAAA-AAAAAAC
10270745 AAAAAAAAAAAAAA
1 AAAAAAAAAAAAAA
10270759 TTCTTTCCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAAC
Found at i:10272189 original size:20 final size:20
Alignment explanation
Indices: 10272137--10272201 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 20
10272127 ATATTACTAT
*
10272137 TTATATATTTAATTCCAT-A
1 TTATATATTTAATTGCATGA
10272156 TT-TCATATTGTTAATTGCATGA
1 TTAT-ATA-T-TTAATTGCATGA
*
10272178 TTATATATTTAATTGCATGT
1 TTATATATTTAATTGCATGA
10272198 TTAT
1 TTAT
10272202 TTGCATGATT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
18 1 0.03
19 5 0.13
20 16 0.41
21 10 0.26
22 6 0.15
23 1 0.03
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (20 bp):
TTATATATTTAATTGCATGA
Found at i:10272214 original size:47 final size:45
Alignment explanation
Indices: 10272089--10272218 Score: 121
Period size: 47 Copynumber: 2.9 Consensus size: 45
10272079 TATTTGTATC
* * *
10272089 ATTATATACTTAATTGCATGTTTAATTGCATGGTT-TATATATTACT
1 ATTATATATTTAATTGCATGTTTATTTGCATGATTGT-TA-ATTACT
* *
10272135 ATTTATATATTTAATTCCA----TATTT-CAT-ATTGTTAATTGCAT
1 A-TTATATATTTAATTGCATGTTTATTTGCATGATTGTTAATTAC-T
10272176 GATTATATATTTAATTGCATGTTTATTTGCATGATTGTTAATT
1 -ATTATATATTTAATTGCATGTTTATTTGCATGATTGTTAATT
10272219 TATTTATTTG
Statistics
Matches: 68, Mismatches: 6, Indels: 19
0.73 0.06 0.20
Matches are distributed among these distances:
40 4 0.06
41 21 0.31
42 5 0.07
43 4 0.06
45 5 0.07
46 4 0.06
47 25 0.37
ACGTcount: A:0.30, C:0.08, G:0.10, T:0.52
Consensus pattern (45 bp):
ATTATATATTTAATTGCATGTTTATTTGCATGATTGTTAATTACT
Found at i:10272242 original size:32 final size:32
Alignment explanation
Indices: 10272206--10272269 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
10272196 GTTTATTTGC
* * *
10272206 ATGATTGTTAATTTATTTATTTGTATGATTAT
1 ATGATTATTAATATATTTATTTGCATGATTAT
*
10272238 ATGATTATTAATATATTTATTTGCATGGTTAT
1 ATGATTATTAATATATTTATTTGCATGATTAT
10272270 TTATTTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.30, C:0.02, G:0.12, T:0.56
Consensus pattern (32 bp):
ATGATTATTAATATATTTATTTGCATGATTAT
Found at i:10272278 original size:32 final size:32
Alignment explanation
Indices: 10272180--10272310 Score: 90
Period size: 32 Copynumber: 4.0 Consensus size: 32
10272170 TTGCATGATT
* * *
10272180 ATATATTTAATTGCATGTTTATTTGCATGATTGTTA
1 ATATATTTATTTGCATGATTATTT--AT--TTATTA
* * *
10272216 ATTTATTTATTTGTATGATTATATGA-TTATTA
1 ATATATTTATTTGCATGATTAT-TTATTTATTA
* *
10272248 ATATATTTATTTGCATGGTTATTTATTTATTT
1 ATATATTTATTTGCATGATTATTTATTTATTA
10272280 AT-TA-TTATTATTGCATGATT-TTATATTTATT
1 ATATATTTA-T-TTGCATGATTATT-TATTTATT
10272311 GCATGTTATG
Statistics
Matches: 78, Mismatches: 12, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
30 3 0.04
31 7 0.09
32 48 0.62
35 1 0.01
36 18 0.23
37 1 0.01
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.59
Consensus pattern (32 bp):
ATATATTTATTTGCATGATTATTTATTTATTA
Found at i:10272321 original size:24 final size:24
Alignment explanation
Indices: 10272294--10272355 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
10272284 TTATTATTGC
* *
10272294 ATGATTTTATATTTATTGCATGTT
1 ATGATATTATATTTATTGCATGAT
*
10272318 ATGATATAATATGTTATTGCATGAT
1 ATGATATTATAT-TTATTGCATGAT
10272343 -TGATATTATATTT
1 ATGATATTATATTT
10272356 GAATGATATT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 2 0.06
24 20 0.61
25 11 0.33
ACGTcount: A:0.31, C:0.03, G:0.13, T:0.53
Consensus pattern (24 bp):
ATGATATTATATTTATTGCATGAT
Found at i:10272354 original size:19 final size:20
Alignment explanation
Indices: 10272282--10272351 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 20
10272272 ATTTATTTAT
*
10272282 TATTATTATTGCATGATT-T
1 TATTATTATTGCATGATTGA
*
10272301 TA-TATTTATTGCATGTTATGA
1 TATTA-TTATTGCATGAT-TGA
10272322 TATAATATGTTATTGCATGATTGA
1 TAT--TA--TTATTGCATGATTGA
10272346 TATTAT
1 TATTAT
10272352 ATTTGAATGA
Statistics
Matches: 40, Mismatches: 4, Indels: 13
0.70 0.07 0.23
Matches are distributed among these distances:
18 2 0.05
19 13 0.32
20 2 0.05
21 2 0.05
22 2 0.05
24 8 0.20
25 11 0.28
ACGTcount: A:0.30, C:0.04, G:0.13, T:0.53
Consensus pattern (20 bp):
TATTATTATTGCATGATTGA
Found at i:10272476 original size:20 final size:20
Alignment explanation
Indices: 10272448--10272511 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
10272438 TGATTTCATT
*
10272448 TTTGTATGGTTATTAATATA
1 TTTGCATGGTTATTAATATA
*
10272468 TTTGCATGG-TATT-TTATA
1 TTTGCATGGTTATTAATATA
* *
10272486 TTATTGCATGATAATTAATATA
1 -T-TTGCATGGTTATTAATATA
10272508 TTTG
1 TTTG
10272512 TATGACATTC
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
18 4 0.11
19 5 0.14
20 18 0.51
21 4 0.11
22 4 0.11
ACGTcount: A:0.30, C:0.03, G:0.14, T:0.53
Consensus pattern (20 bp):
TTTGCATGGTTATTAATATA
Found at i:10272516 original size:20 final size:20
Alignment explanation
Indices: 10272459--10272516 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
10272449 TTGTATGGTT
*
10272459 ATTAATATATTTGCATGGTA
1 ATTAATATATTTGCATGATA
* *
10272479 TTTTATAT-TATTGCATGATA
1 ATTAATATAT-TTGCATGATA
*
10272499 ATTAATATATTTGTATGA
1 ATTAATATATTTGCATGA
10272517 CATTCTTGCA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
19 1 0.03
20 28 0.93
21 1 0.03
ACGTcount: A:0.34, C:0.03, G:0.12, T:0.50
Consensus pattern (20 bp):
ATTAATATATTTGCATGATA
Found at i:10273661 original size:20 final size:21
Alignment explanation
Indices: 10273633--10273672 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
10273623 TATTAACCTT
10273633 TTATATTATT-CTTGTATATA
1 TTATATTATTCCTTGTATATA
*
10273653 TTATGTTATTCCTTGTATAT
1 TTATATTATTCCTTGTATAT
10273673 GTTAACTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.25, C:0.07, G:0.07, T:0.60
Consensus pattern (21 bp):
TTATATTATTCCTTGTATATA
Found at i:10283741 original size:78 final size:78
Alignment explanation
Indices: 10283603--10283746 Score: 191
Period size: 78 Copynumber: 1.8 Consensus size: 78
10283593 GTTTATATTT
* * * * *
10283603 GGATGATAAAGTGGATGAGATTACTTAATAGTGTATAATGTCCATGAAGATCCTGCATGATAACT
1 GGATGATAAAGTGGATAAGATTACTTAATAATGCATAATGTCAATGAAGATCATGCATGATAACT
10283668 TACCTTTGAATTG
66 TACCTTTGAATTG
* * * *
10283681 GGATGATAAATTGTATAAGATTACTTAATAATGCATGATGTCAAT-AAGGATCATGTATGATAAC
1 GGATGATAAAGTGGATAAGATTACTTAATAATGCATAATGTCAATGAA-GATCATGCATGATAAC
10283745 TT
65 TT
10283747 GTGTTGATAA
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
77 2 0.04
78 54 0.96
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.34
Consensus pattern (78 bp):
GGATGATAAAGTGGATAAGATTACTTAATAATGCATAATGTCAATGAAGATCATGCATGATAACT
TACCTTTGAATTG
Found at i:10285789 original size:24 final size:24
Alignment explanation
Indices: 10285758--10285849 Score: 89
Period size: 24 Copynumber: 3.9 Consensus size: 24
10285748 AAGTTTTTCC
*
10285758 TTTTATTTTTTTTTCA-TTTTTGA
1 TTTTATTTTTTTTTAATTTTTTGA
* *
10285781 TTTTAATTTATTTTAATTTTTTGA
1 TTTTATTTTTTTTTAATTTTTTGA
* * * *
10285805 TTTTATTATTTTTT-GTTCTGTTCA
1 TTTTATTTTTTTTTAATT-TTTTGA
*
10285829 TTTTATTTATTTTTAATTTTT
1 TTTTATTTTTTTTTAATTTTT
10285850 AATTTTTTTA
Statistics
Matches: 53, Mismatches: 13, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
23 15 0.28
24 36 0.68
25 2 0.04
ACGTcount: A:0.17, C:0.03, G:0.04, T:0.75
Consensus pattern (24 bp):
TTTTATTTTTTTTTAATTTTTTGA
Found at i:10286170 original size:20 final size:20
Alignment explanation
Indices: 10286124--10286183 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
10286114 ATATTACTAT
*
10286124 TTATATATTTAATTCCAT-A
1 TTATATATTTAATTGCATGA
*
10286143 TTTTATATTGTTAATTGCATGA
1 TTATATA-T-TTAATTGCATGA
10286165 TTATATATTTAATTGCATG
1 TTATATATTTAATTGCATG
10286184 TGTATTTGCA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
19 6 0.17
20 12 0.34
21 10 0.29
22 7 0.20
ACGTcount: A:0.32, C:0.07, G:0.08, T:0.53
Consensus pattern (20 bp):
TTATATATTTAATTGCATGA
Found at i:10286266 original size:32 final size:32
Alignment explanation
Indices: 10286193--10286256 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
10286183 GTGTATTTGC
* *
10286193 ATGATTATTAATATATTTATTTGTATGATTGT
1 ATGATTATTAATATATTTATTTGCATGATTAT
*
10286225 ATGATTATTAATATATTTATTTGCATGGTTAT
1 ATGATTATTAATATATTTATTTGCATGATTAT
10286257 TTATTTATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.31, C:0.02, G:0.12, T:0.55
Consensus pattern (32 bp):
ATGATTATTAATATATTTATTTGCATGATTAT
Found at i:10286317 original size:25 final size:24
Alignment explanation
Indices: 10286276--10286338 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
10286266 ATTGTTATTG
*
10286276 CATGATTTTATATTTATTACATGA
1 CATGATATTATATTTATTACATGA
*
10286300 CATGATATTATATGTTATTGCATGA
1 CATGATATTATAT-TTATTACATGA
* *
10286325 -TTAATATTATATTT
1 CATGATATTATATTT
10286339 GAATGATATG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
23 2 0.06
24 22 0.65
25 10 0.29
ACGTcount: A:0.33, C:0.06, G:0.10, T:0.51
Consensus pattern (24 bp):
CATGATATTATATTTATTACATGA
Found at i:10286331 original size:24 final size:22
Alignment explanation
Indices: 10286262--10286336 Score: 68
Period size: 24 Copynumber: 3.4 Consensus size: 22
10286252 GTTATTTATT
10286262 TATTAT-TGTTATTGCATGAT-
1 TATTATATGTTATTGCATGATA
*
10286282 T-TTATAT-TTATTACATGACATGA
1 TATTATATGTTATTGCATG--AT-A
10286305 TATTATATGTTATTGCATGATTAA
1 TATTATATGTTATTGCATGA-T-A
10286329 TATTATAT
1 TATTATAT
10286337 TTGAATGATA
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
19 13 0.30
20 2 0.05
21 2 0.05
23 2 0.05
24 16 0.36
25 9 0.20
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.52
Consensus pattern (22 bp):
TATTATATGTTATTGCATGATA
Found at i:10286542 original size:20 final size:20
Alignment explanation
Indices: 10286432--10286544 Score: 103
Period size: 20 Copynumber: 5.9 Consensus size: 20
10286422 TTGTATGGCT
* *
10286432 ATTAATACATTTGCATGGTA
1 ATTAATATATTTGCATGATA
* *
10286452 TTTTATAT-TATTGCATGATA
1 ATTAATATAT-TTGCATGATA
10286472 ATTAATATATTTGCATGAT-
1 ATTAATATATTTGCATGATA
** *
10286491 ATT-ATATATTTATATGATT
1 ATTAATATATTTGCATGATA
*
10286510 GTT-AT-TA-TTGCATGATA
1 ATTAATATATTTGCATGATA
10286527 ATTAATATATTTGCATGA
1 ATTAATATATTTGCATGA
10286545 CATTCTTGCA
Statistics
Matches: 74, Mismatches: 13, Indels: 12
0.75 0.13 0.12
Matches are distributed among these distances:
17 9 0.12
18 17 0.23
19 10 0.14
20 37 0.50
21 1 0.01
ACGTcount: A:0.35, C:0.05, G:0.12, T:0.49
Consensus pattern (20 bp):
ATTAATATATTTGCATGATA
Found at i:10288982 original size:23 final size:24
Alignment explanation
Indices: 10288942--10288989 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
10288932 AACCTTGTAC
*
10288942 ACCTCTTCAATGTAAAAA-AAAAT
1 ACCTCTTCAATGCAAAAAGAAAAT
* *
10288965 ACCTCTTTAATGCCAAAAGAAAAT
1 ACCTCTTCAATGCAAAAAGAAAAT
10288989 A
1 A
10288990 TGTAGTCCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.50, C:0.19, G:0.06, T:0.25
Consensus pattern (24 bp):
ACCTCTTCAATGCAAAAAGAAAAT
Found at i:10290677 original size:21 final size:21
Alignment explanation
Indices: 10290652--10290691 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
10290642 ATAAATATTT
10290652 AAAAAGGA-AAAAAAGTAAATG
1 AAAAAGGATAAAAAA-TAAATG
*
10290673 AAAAATGATAAAAAATAAA
1 AAAAAGGATAAAAAATAAA
10290692 AAAAAGAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.12
Consensus pattern (21 bp):
AAAAAGGATAAAAAATAAATG
Found at i:10291154 original size:33 final size:32
Alignment explanation
Indices: 10291093--10291155 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 32
10291083 GAAAAAAGGT
* ** *
10291093 AAAAAAATAAAAAAGCAAAAGCATAAAAGAAA
1 AAAAAAAAAAAAAAGCAAAAAAAAAAAAGAAA
10291125 AAAAAAAGAAAAAAAGCAAAAAAAAAAAAGA
1 AAAAAAA-AAAAAAAGCAAAAAAAAAAAAGA
10291156 TTGACACTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 7 0.27
33 19 0.73
ACGTcount: A:0.83, C:0.05, G:0.10, T:0.03
Consensus pattern (32 bp):
AAAAAAAAAAAAAAGCAAAAAAAAAAAAGAAA
Found at i:10292532 original size:55 final size:55
Alignment explanation
Indices: 10292471--10292769 Score: 313
Period size: 55 Copynumber: 5.4 Consensus size: 55
10292461 TATTTTTTTT
**
10292471 TAATTTCAAAATTTTGAGAAAAAAGTTGATGTATCAAATTTTCCTTAAAGAAAAA
1 TAATTTCAAAATTTTGAGAAAAAAGTTGAAATATCAAATTTTCCTTAAAGAAAAA
* * * * *
10292526 TAATTTCAAATTTTTGAGGAAAAATTTGACATATCAAATTTTCCTTAAAATAAAAA
1 TAATTTCAAAATTTTGAGAAAAAAGTTGAAATATCAAATTTTCCTT-AAAGAAAAA
* ** * * * * *
10292582 TTATTTCAAAA-TTAAAGGAAAAAGTTAAAATATCAAAATTTTCATAAAATAAAAA
1 TAATTTCAAAATTTTGAGAAAAAAGTTGAAATATC-AAATTTTCCTTAAAGAAAAA
* *
10292637 TAATTTC-AAATTTTGAGGAAAAAGTTGAAATATCAATTTTTCCTTAAA-AATAAGA
1 TAATTTCAAAATTTTGAGAAAAAAGTTGAAATATCAAATTTTCCTTAAAGAA-AA-A
* * * *
10292692 TAATTTCAAAA--TTAAAAAAAAAGTTGAAATATTAAAATTTCCTTTAAACG-AAAA
1 TAATTTCAAAATTTTGAGAAAAAAGTTGAAATATCAAATTTTCC-TTAAA-GAAAAA
10292746 TAATTTCAAAATTTTGAGAAAAAA
1 TAATTTCAAAATTTTGAGAAAAAA
10292770 ATTTTCCTTA
Statistics
Matches: 203, Mismatches: 30, Indels: 21
0.80 0.12 0.08
Matches are distributed among these distances:
53 2 0.01
54 53 0.26
55 109 0.54
56 39 0.19
ACGTcount: A:0.51, C:0.07, G:0.08, T:0.34
Consensus pattern (55 bp):
TAATTTCAAAATTTTGAGAAAAAAGTTGAAATATCAAATTTTCCTTAAAGAAAAA
Found at i:10292772 original size:42 final size:43
Alignment explanation
Indices: 10292725--10292812 Score: 142
Period size: 43 Copynumber: 2.1 Consensus size: 43
10292715 TTGAAATATT
* *
10292725 AAAA-TTTCCTTTAAACGAAAATAATTTCAAAATTTTGAGAAA
1 AAAATTTTCCTTAAAACGAAAATAATTTCAAAATTTTAAGAAA
*
10292767 AAAATTTTCCTTAAAACTAAAATAATTTCAAAATTTTAAGAAA
1 AAAATTTTCCTTAAAACGAAAATAATTTCAAAATTTTAAGAAA
10292810 AAA
1 AAA
10292813 GTTGAAATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 4 0.10
43 38 0.90
ACGTcount: A:0.53, C:0.09, G:0.05, T:0.33
Consensus pattern (43 bp):
AAAATTTTCCTTAAAACGAAAATAATTTCAAAATTTTAAGAAA
Found at i:10301089 original size:22 final size:22
Alignment explanation
Indices: 10301064--10301125 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 22
10301054 AATTTTGCAA
10301064 AAAATTTCTGTTAGTAATAATT
1 AAAATTTCTGTTAGTAATAATT
* *
10301086 AAAA-TTCTATTGGTAATAATT
1 AAAATTTCTGTTAGTAATAATT
**
10301107 ATTATTT-TCGTTAGTAATA
1 AAAATTTCT-GTTAGTAATA
10301126 TTTATTTTTC
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
21 18 0.56
22 14 0.44
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.47
Consensus pattern (22 bp):
AAAATTTCTGTTAGTAATAATT
Found at i:10303555 original size:117 final size:118
Alignment explanation
Indices: 10303433--10303667 Score: 321
Period size: 118 Copynumber: 2.0 Consensus size: 118
10303423 ATCAATAAAT
* * * * *
10303433 ATTTTTTT-ATTTTAATAATTATTATTAAATTTTAAAAAATATCAAATGT-AAAATTTTTTAAAA
1 ATTTTTTTAATTTCAATAATTATTATTAAATTTTAAAAAATAGCAAATATAAAAAATTTTCAAAA
* *
10303496 CAAATATAAATCTTAATACATATCAAACCCAAATTTAAAACAAAATCAACATA
66 CAAATATAAATCTAAATACACATCAAACCCAAATTTAAAACAAAATCAACATA
* *
10303549 ATTTTTTTAATTTCAATAATTATTATTAAGTTTTAAAGAATAGCAAATATAAAAAATTTTCAAAA
1 ATTTTTTTAATTTCAATAATTATTATTAAATTTTAAAAAATAGCAAATATAAAAAATTTTCAAAA
* * * ** *
10303614 TAAATATAAATCTAAATACACATTAAATCCAAATTTATGATAAAATCAACATA
66 CAAATATAAATCTAAATACACATCAAACCCAAATTTAAAACAAAATCAACATA
10303667 A
1 A
10303668 ATCTTACACA
Statistics
Matches: 102, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
116 8 0.08
117 36 0.35
118 58 0.57
ACGTcount: A:0.51, C:0.09, G:0.02, T:0.38
Consensus pattern (118 bp):
ATTTTTTTAATTTCAATAATTATTATTAAATTTTAAAAAATAGCAAATATAAAAAATTTTCAAAA
CAAATATAAATCTAAATACACATCAAACCCAAATTTAAAACAAAATCAACATA
Found at i:10307143 original size:45 final size:47
Alignment explanation
Indices: 10307076--10307163 Score: 135
Period size: 45 Copynumber: 1.9 Consensus size: 47
10307066 CAAATAAAAG
* *
10307076 ATATTTCATTTTTCATTTCATTCCTTCTCTTTTCCTT-TTAATGCCT
1 ATATTTCATTTTTCATTCCATTCATTCTCTTTTCCTTCTTAATGCCT
*
10307122 ATATTTCA-TTTTCATTCCATTCATTCTCTTTTTCTTCTTAAT
1 ATATTTCATTTTTCATTCCATTCATTCTCTTTTCCTTCTTAAT
10307164 ACCTTGCATT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
45 25 0.66
46 13 0.34
ACGTcount: A:0.17, C:0.23, G:0.01, T:0.59
Consensus pattern (47 bp):
ATATTTCATTTTTCATTCCATTCATTCTCTTTTCCTTCTTAATGCCT
Found at i:10307965 original size:40 final size:39
Alignment explanation
Indices: 10307921--10308028 Score: 110
Period size: 39 Copynumber: 2.7 Consensus size: 39
10307911 ATGCTTTCAA
* * **
10307921 GTTGAAAGAGTCTTTACTTTTTAAAGTTGTGTATTTTTAT
1 GTTGAAAGAG-CCTTAATTTTTAAAGTTGTGTACATTTAT
* * *
10307961 GTTG-AAGAAGCCTTAATTTTTAAAGTTATGTGCATTTGT
1 GTTGAAAG-AGCCTTAATTTTTAAAGTTGTGTACATTTAT
*
10308000 GTTGAAGGAGCCCTTAATTTTTAAAGTTG
1 GTTGAAAGAG-CCTTAATTTTTAAAGTTG
10308029 CATGTCTTCG
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
39 31 0.55
40 25 0.45
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.45
Consensus pattern (39 bp):
GTTGAAAGAGCCTTAATTTTTAAAGTTGTGTACATTTAT
Found at i:10307981 original size:39 final size:40
Alignment explanation
Indices: 10307938--10308028 Score: 121
Period size: 39 Copynumber: 2.3 Consensus size: 40
10307928 GAGTCTTTAC
**
10307938 TTTTTAAAGTTGTGTATTTTTATGTTGAAGAAG-CCTTAA
1 TTTTTAAAGTTGTGTACATTTATGTTGAAGAAGCCCTTAA
* * * *
10307977 TTTTTAAAGTTATGTGCATTTGTGTTGAAGGAGCCCTTAA
1 TTTTTAAAGTTGTGTACATTTATGTTGAAGAAGCCCTTAA
10308017 TTTTTAAAGTTG
1 TTTTTAAAGTTG
10308029 CATGTCTTCG
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 27 0.61
40 17 0.39
ACGTcount: A:0.26, C:0.07, G:0.20, T:0.47
Consensus pattern (40 bp):
TTTTTAAAGTTGTGTACATTTATGTTGAAGAAGCCCTTAA
Found at i:10308051 original size:40 final size:40
Alignment explanation
Indices: 10307971--10308051 Score: 94
Period size: 40 Copynumber: 2.0 Consensus size: 40
10307961 GTTGAAGAAG
* * *
10307971 CCTTAATTTTTAAAGTTATGTGCATTTGTGTTGAAGGAGC
1 CCTTAATTTTTAAAGTTATGTGCATTCGTATTGAAAGAGC
*
10308011 CCTTAATTTTTAAAGTTGCATGT-C-TTCGTATTTAAAGAGC
1 CCTTAATTTTTAAAGTT--ATGTGCATTCGTATTGAAAGAGC
10308051 C
1 C
10308052 TTTGATTTCT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
40 30 0.86
41 1 0.03
42 4 0.11
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.42
Consensus pattern (40 bp):
CCTTAATTTTTAAAGTTATGTGCATTCGTATTGAAAGAGC
Found at i:10309420 original size:54 final size:54
Alignment explanation
Indices: 10309346--10309736 Score: 304
Period size: 54 Copynumber: 7.1 Consensus size: 54
10309336 TTTTTTTTTT
* * *
10309346 ATTTCAAAATTTTGGGAAAAGAGTTAAAATATCAAATTT-T-TTAAAATAAAAATA
1 ATTTCAAAA--TTGAGAAAAAAGTTGAAATATCAAATTTCTCTTAAAATAAAAATA
* * * *
10309400 ATTTTAAAATTGAGGAAAAAGTTAAAATATCAAAATTT-TCTTAAAATTAAAATA
1 ATTTCAAAATTGAGAAAAAAGTTGAAATATC-AAATTTCTCTTAAAATAAAAATA
* * * *
10309454 ATATCAAAAATGAAAAGAAAAAGTTGAAATATC-AATTTCTCCTTAAAATAAAAATG
1 ATTTCAAAATTG-AGA-AAAAAGTTGAAATATCAAATTTCT-CTTAAAATAAAAATA
* * * * *
10309510 ATTTCAAAATTAAAGAAAAAAAGTTGAAGTATC-TATTTGTCCTTAAAATAAAAATG
1 ATTTCAAAATT-GAG-AAAAAAGTTGAAATATCAAATTTCT-CTTAAAATAAAAATA
* *
10309566 ATTTCCAAATT-A-AAGAAAATTTTGAAATATCAAAGTTTCT-TTAAAATAAAAATA
1 ATTTCAAAATTGAGAA-AAAA-GTTGAAATATCAAA-TTTCTCTTAAAATAAAAATA
* * * *
10309620 ATTTCAAATTTTGAGAAAAAA-TTGAAATATTAAATTT-TCCTTTAAATGAAAATA
1 ATTTCAAA-ATTGAGAAAAAAGTTGAAATATCAAATTTCT-CTTAAAATAAAAATA
* * *
10309674 ATTTCAAAATTTTAAGAAAAAA-TTGAAATATC-AATTGTTTCTCAAAACT-AAAATA
1 ATTTCAAAA--TTGAGAAAAAAGTTGAAATATCAAATT-TCTCTTAAAA-TAAAAATA
10309729 ATTTCAAA
1 ATTTCAAA
10309737 TTTTCAACTA
Statistics
Matches: 279, Mismatches: 36, Indels: 43
0.78 0.10 0.12
Matches are distributed among these distances:
52 22 0.08
53 14 0.05
54 101 0.36
55 44 0.16
56 95 0.34
57 3 0.01
ACGTcount: A:0.52, C:0.07, G:0.08, T:0.34
Consensus pattern (54 bp):
ATTTCAAAATTGAGAAAAAAGTTGAAATATCAAATTTCTCTTAAAATAAAAATA
Found at i:10309505 original size:110 final size:107
Alignment explanation
Indices: 10309361--10309827 Score: 365
Period size: 110 Copynumber: 4.3 Consensus size: 107
10309351 AAAATTTTGG
* * *
10309361 GAAAAGAGTTAAAATATCAAATTT-TTTAAAATAAAAATAATTTTAAAATTGAGGAAAAAGTTAA
1 GAAAA-AGTTGAAATATCAAATTTCTTTAAAATAAAAATAATTTCAAAATTGAGGAAAAAGTTGA
* * *
10309425 AATATCAAAATTTT-CTTAAAATTAAAATAATATCAAAAATGAAAA
65 AATATC-AAATTTTCCTTAAAATAAAAATAATTTC-AAAAT-TAAA
* * *
10309470 GAAAAAGTTGAAATATC-AATTTCTCCTTAAAATAAAAATGATTTCAAAATTAAAGAAAAAAAGT
1 GAAAAAGTTGAAATATCAAATTTCT--TTAAAATAAAAATAATTTCAAAATT-GAG-GAAAAAGT
* * * *
10309534 TGAAGTATC-TATTTGTCCTTAAAATAAAAATGATTTCCAAATTAAA
62 TGAAATATCAAATTT-TCCTTAAAATAAAAATAATTTCAAAATTAAA
** * *
10309580 GAAAATTTTGAAATATCAAAGTTTCTTTAAAATAAAAATAATTTCAAATTTTGA-GAAAAAATTG
1 GAAAAAGTTGAAATATCAAA-TTTCTTTAAAATAAAAATAATTTCAAA-ATTGAGGAAAAAGTTG
* * * *
10309644 AAATATTAAATTTTCCTTTAAATGAAAATAATTTCAAAATTTTAA
64 AAATATCAAATTTTCCTTAAAATAAAAATAATTTCAAAA-TTAAA
* * * ** *
10309689 GAAAAAATTGAAATATC-AATTGT-TTCTCAAAACT-AAAATAATTTCAAATTTTCAACTAAAAT
1 GAAAAAGTTGAAATATCAAATT-TCTT-T-AAAA-TAAAAATAATTTCAAA-ATT-GAGGAAAAA
* * * * * * *
10309751 TTTAAAATATCAAATTTTCCTTAAAGTGAAAATAATTTTAAATGTTAAG
60 GTTGAAATATCAAATTTTCCTTAAAATAAAAATAATTTCAAA-ATTAAA
* * *
10309800 GAAGAAGTTAAAATATCAATTTTTCTTT
1 GAAAAAGTTGAAATATCAA-ATTTCTTT
10309828 GAGACTAAAA
Statistics
Matches: 290, Mismatches: 46, Indels: 41
0.77 0.12 0.11
Matches are distributed among these distances:
107 9 0.03
108 51 0.18
109 50 0.17
110 69 0.24
111 68 0.23
112 39 0.13
113 4 0.01
ACGTcount: A:0.51, C:0.07, G:0.07, T:0.35
Consensus pattern (107 bp):
GAAAAAGTTGAAATATCAAATTTCTTTAAAATAAAAATAATTTCAAAATTGAGGAAAAAGTTGAA
ATATCAAATTTTCCTTAAAATAAAAATAATTTCAAAATTAAA
Found at i:10309824 original size:55 final size:55
Alignment explanation
Indices: 10309346--10309824 Score: 331
Period size: 56 Copynumber: 8.7 Consensus size: 55
10309336 TTTTTTTTTT
* *
10309346 ATTTCAAAATTTT-GGGAAAAGAGTTAAAATATCAAATTTT--TTAAAATAAAAATA
1 ATTT-AAAATTTTAAGGAAAA-AGTTGAAATATCAAATTTTCCTTAAAATAAAAATA
* * *
10309400 ATTTTAAAA--TTGAGGAAAAAGTTAAAATATCAAAATTTT-CTTAAAATTAAAATA
1 A-TTTAAAATTTTAAGGAAAAAGTTGAAATATC-AAATTTTCCTTAAAATAAAAATA
* * ** * *
10309454 ATATCAAAAATGAAAAGAAAAAGTTGAAATATC-AATTTCTCCTTAAAATAAAAATG
1 AT-TTAAAATTTTAAGGAAAAAGTTGAAATATCAAATTT-TCCTTAAAATAAAAATA
* * * * *
10309510 ATTTCAAAA-TTAAAGAAAAAAAGTTGAAGTATC-TATTTGTCCTTAAAATAAAAATG
1 ATTT-AAAATTTTAAG-GAAAAAGTTGAAATATCAAATTT-TCCTTAAAATAAAAATA
* * ** * *
10309566 ATTTCCAAA--TTAAAGAAAATTTTGAAATATCAAAGTTTCTTTAAAATAAAAATA
1 ATTT-AAAATTTTAAGGAAAAAGTTGAAATATCAAATTTTCCTTAAAATAAAAATA
* * * * * *
10309620 ATTTCAAATTTTGA-GAAAAAATTGAAATATTAAATTTTCCTTTAAATGAAAATA
1 ATTTAAAATTTTAAGGAAAAAGTTGAAATATCAAATTTTCCTTAAAATAAAAATA
* * *
10309674 ATTTCAAAATTTTAA-GAAAAAATTGAAATATC-AATTGTTTCTCAAAACT-AAAATA
1 ATTT-AAAATTTTAAGGAAAAAGTTGAAATATCAAATT-TTCCTTAAAA-TAAAAATA
* ** ** * * *
10309729 ATTTCAAATTTTCAACTAAAATTTTAAAATATCAAATTTTCCTTAAAGTGAAAATA
1 ATTTAAAATTTT-AAGGAAAAAGTTGAAATATCAAATTTTCCTTAAAATAAAAATA
* * * * *
10309785 ATTTTAAATGTTAAGGAAGAAGTTAAAATATCAATTTTTC
1 ATTTAAAATTTTAAGGAAAAAGTTGAAATATCAAATTTTC
10309825 TTTGAGACTA
Statistics
Matches: 346, Mismatches: 58, Indels: 41
0.78 0.13 0.09
Matches are distributed among these distances:
52 14 0.04
53 18 0.05
54 109 0.32
55 84 0.24
56 117 0.34
57 4 0.01
ACGTcount: A:0.50, C:0.07, G:0.08, T:0.35
Consensus pattern (55 bp):
ATTTAAAATTTTAAGGAAAAAGTTGAAATATCAAATTTTCCTTAAAATAAAAATA
Found at i:10309850 original size:111 final size:111
Alignment explanation
Indices: 10309544--10309825 Score: 276
Period size: 109 Copynumber: 2.6 Consensus size: 111
10309534 TGAAGTATCT
* * * * * ** * *
10309544 ATTTGTCCTTAAAATAAAAATGATTTCCAAAT-TAAAGAAAATTTTGAAATATCAA-AGTTTCTT
1 ATTT-TCCTTTAAATGAAAATAATTTCAAAATGTTAAGAAAAAATTAAAATATCAATTGTTTC-T
* * * * *
10309607 TAAAA-TAAAAATAATTTCAAATTTTGAGA--AAAA-ATTGAAATATTAA
64 CAAAACT-AAAATAATTTCAAATTTTCA-ACTAAAATTTTAAAATATCAA
* *
10309653 ATTTTCCTTTAAATGAAAATAATTTCAAAATTTTAAGAAAAAATTGAAATATCAATTGTTTCTCA
1 ATTTTCCTTTAAATGAAAATAATTTCAAAATGTTAAGAAAAAATTAAAATATCAATTGTTTCTCA
10309718 AAACTAAAATAATTTCAAATTTTCAACTAAAATTTTAAAATATCAA
66 AAACTAAAATAATTTCAAATTTTCAACTAAAATTTTAAAATATCAA
* * *
10309764 ATTTTCC-TTAAAGTGAAAATAATTT-TAAATGTTAAGGAAGAAGTTAAAATATCAATT-TTTCT
1 ATTTTCCTTTAAA-TGAAAATAATTTCAAAATGTTAA-GAAAAAATTAAAATATCAATTGTTTCT
10309826 TTGAGACTAA
Statistics
Matches: 147, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
108 24 0.16
109 48 0.33
110 28 0.19
111 47 0.32
ACGTcount: A:0.48, C:0.08, G:0.07, T:0.38
Consensus pattern (111 bp):
ATTTTCCTTTAAATGAAAATAATTTCAAAATGTTAAGAAAAAATTAAAATATCAATTGTTTCTCA
AAACTAAAATAATTTCAAATTTTCAACTAAAATTTTAAAATATCAA
Found at i:10310381 original size:13 final size:13
Alignment explanation
Indices: 10310363--10310388 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10310353 AAATCTAAAT
10310363 AAAAAAAATTTTA
1 AAAAAAAATTTTA
10310376 AAAAAAAATTTTA
1 AAAAAAAATTTTA
10310389 GAATTAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAAAAAATTTTA
Found at i:10315295 original size:26 final size:27
Alignment explanation
Indices: 10315266--10315320 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
10315256 TCAAAACACA
*
10315266 AAGAAAGCTAAAC-TGCAAGTTAACTC
1 AAGAAAACTAAACATGCAAGTTAACTC
* *
10315292 AAGAAAACTACACATGCATGTTAACTC
1 AAGAAAACTAAACATGCAAGTTAACTC
10315319 AA
1 AA
10315321 AACAAAATCT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 11 0.44
27 14 0.56
ACGTcount: A:0.47, C:0.20, G:0.13, T:0.20
Consensus pattern (27 bp):
AAGAAAACTAAACATGCAAGTTAACTC
Found at i:10320470 original size:9 final size:9
Alignment explanation
Indices: 10320436--10320469 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
10320426 AATTCTTTTA
10320436 CTTCTTCCT
1 CTTCTTCCT
*
10320445 CCTCTTCCT
1 CTTCTTCCT
*
10320454 CTTCTTCTT
1 CTTCTTCCT
10320463 CTTCTTC
1 CTTCTTC
10320470 TGGATTATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (9 bp):
CTTCTTCCT
Found at i:10323174 original size:52 final size:52
Alignment explanation
Indices: 10323109--10323213 Score: 167
Period size: 52 Copynumber: 2.0 Consensus size: 52
10323099 TGGACAAGAA
10323109 GACTTGCAAAAGAAAAATTCTAAAAGGAAAAAG-ATTCTTAATAGACAAGTTT
1 GACTTGCAAAAGAAAAATTCTAAAA-GAAAAAGAATTCTTAATAGACAAGTTT
* * *
10323161 GACTTGCAGAAGAAGAATTCTAAAAGAAAAAGAATTCTTAATAGGCAAGTTT
1 GACTTGCAAAAGAAAAATTCTAAAAGAAAAAGAATTCTTAATAGACAAGTTT
10323213 G
1 G
10323214 TATACTTATA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
51 7 0.14
52 42 0.86
ACGTcount: A:0.48, C:0.10, G:0.18, T:0.25
Consensus pattern (52 bp):
GACTTGCAAAAGAAAAATTCTAAAAGAAAAAGAATTCTTAATAGACAAGTTT
Found at i:10325082 original size:29 final size:29
Alignment explanation
Indices: 10325026--10325097 Score: 108
Period size: 29 Copynumber: 2.4 Consensus size: 29
10325016 TATTTAAGGG
*
10325026 TTTAATTGATTCAAAATAAAAAATTAAGAA
1 TTTAATTGATT-ATAATAAAAAATTAAGAA
*
10325056 TTTAATTGATTATAATAAAATATTAAGAA
1 TTTAATTGATTATAATAAAAAATTAAGAA
*
10325085 TTTAATTAATTAT
1 TTTAATTGATTAT
10325098 TAAATTTTTG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 28 0.72
30 11 0.28
ACGTcount: A:0.51, C:0.01, G:0.06, T:0.42
Consensus pattern (29 bp):
TTTAATTGATTATAATAAAAAATTAAGAA
Found at i:10327501 original size:8 final size:8
Alignment explanation
Indices: 10327490--10327522 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
10327480 TCAAAACAAA
10327490 AAAAAAAT
1 AAAAAAAT
10327498 -AAAAAAT
1 AAAAAAAT
10327505 AAAAAAAGT
1 AAAAAAA-T
10327514 AAAAAAAT
1 AAAAAAAT
10327522 A
1 A
10327523 TTGATAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 7 0.30
8 8 0.35
9 8 0.35
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (8 bp):
AAAAAAAT
Found at i:10327733 original size:164 final size:165
Alignment explanation
Indices: 10327557--10327854 Score: 422
Period size: 164 Copynumber: 1.8 Consensus size: 165
10327547 ACAAATTACC
* * *
10327557 CAATGATGAGATTTTTAGAAATTTGAAATAGTAAATT-TCTAAAAAATCTCTAGGTGAAAAATTT
1 CAATAATGAGATTCTTAGAAATTTGAAATAGTAAATTCT-TAAAAAATCTCTAAGTGAAAAA-TT
* * * *
10327621 TCTCTAAATTTATCTCAAATTGTGAAATAATTTAGATGAAATTTCAAT-AAAAATAATTGT-ATT
64 TCTCTAAATTTATCCCAAATAGTGAAAGAATTTAAATGAAATTTCAATAAAAAATAATTGTCATT
*
10327684 CTTTTCCAAATTTGGTTGAAAATATTTGATAATTATT
129 ATTTTCCAAATTTGGTTGAAAATATTTGATAATTATT
* * * *
10327721 CAATAATGAGATTCTTAGAAATTTTAAATAGTAAATTCTTAAGAAATCTTTAAGTGAGAAATTTC
1 CAATAATGAGATTCTTAGAAATTTGAAATAGTAAATTCTTAAAAAATCTCTAAGTGAAAAATTTC
* * *
10327786 TTTAAATTTGTCCCAAATAGTGAAAGAATTTAAATGAAATTTTAATAAAAAATAATTGTCATTAT
66 TCTAAATTTATCCCAAATAGTGAAAGAATTTAAATGAAATTTCAATAAAAAATAATTGTCATTAT
10327851 TTTC
131 TTTC
10327855 TTTCCGAAGA
Statistics
Matches: 116, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
163 43 0.37
164 64 0.55
165 9 0.08
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (165 bp):
CAATAATGAGATTCTTAGAAATTTGAAATAGTAAATTCTTAAAAAATCTCTAAGTGAAAAATTTC
TCTAAATTTATCCCAAATAGTGAAAGAATTTAAATGAAATTTCAATAAAAAATAATTGTCATTAT
TTTCCAAATTTGGTTGAAAATATTTGATAATTATT
Found at i:10327750 original size:25 final size:26
Alignment explanation
Indices: 10327722--10327773 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
10327712 ATAATTATTC
*
10327722 AATAATGAGATTCTT-AGAAAT-TTTA
1 AATAAT-AAATTCTTAAGAAATCTTTA
*
10327747 AATAGTAAATTCTTAAGAAATCTTTA
1 AATAATAAATTCTTAAGAAATCTTTA
10327773 A
1 A
10327774 GTGAGAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 7 0.30
25 11 0.48
26 5 0.22
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.38
Consensus pattern (26 bp):
AATAATAAATTCTTAAGAAATCTTTA
Found at i:10328004 original size:55 final size:57
Alignment explanation
Indices: 10327884--10328019 Score: 170
Period size: 56 Copynumber: 2.4 Consensus size: 57
10327874 AAATAAAGAG
* * * *
10327884 AAACTATTTTTAAATTGACCCAAATGGTGAAAAATTTAGAAATCCAACAAAAAAAGAG
1 AAAC-ATTTCTAAATTGGCCCAAATGGTGAAAAATTTAGAAATCCAACAAAAAAAAAC
* * *
10327942 AGA-ATTTCTAAATTGGCCCAAATGGTGAAAATTTTAGAAAT-TAA-AAAAAAAAAC
1 AAACATTTCTAAATTGGCCCAAATGGTGAAAAATTTAGAAATCCAACAAAAAAAAAC
*
10327996 AAACATTTCTAATTTGGCCCAAAT
1 AAACATTTCTAAATTGGCCCAAAT
10328020 AGTGGAATAA
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
54 10 0.15
55 21 0.31
56 35 0.51
58 2 0.03
ACGTcount: A:0.49, C:0.12, G:0.12, T:0.26
Consensus pattern (57 bp):
AAACATTTCTAAATTGGCCCAAATGGTGAAAAATTTAGAAATCCAACAAAAAAAAAC
Found at i:10331430 original size:5 final size:5
Alignment explanation
Indices: 10331417--10331461 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
10331407 TAGAAAGAAA
* * *
10331417 AAAAG AAAAT AAAAC AAAAT AAAAT AAAAT AAAAA AAAAT GAAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAA
10331462 ATGAATGCTA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
5 30 0.88
6 4 0.12
ACGTcount: A:0.82, C:0.02, G:0.04, T:0.11
Consensus pattern (5 bp):
AAAAT
Found at i:10331836 original size:21 final size:20
Alignment explanation
Indices: 10331811--10331858 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
10331801 GAAGGAAACA
10331811 AGAAAAAAAA-AGAAAAAAAG
1 AGAAAAAAAATA-AAAAAAAG
*
10331831 ATGAAAAAAAATAAAAAAGAG
1 A-GAAAAAAAATAAAAAAAAG
10331852 AGAAAAA
1 AGAAAAA
10331859 GAATTCTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 7 0.28
21 17 0.68
22 1 0.04
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (20 bp):
AGAAAAAAAATAAAAAAAAG
Found at i:10331839 original size:19 final size:18
Alignment explanation
Indices: 10331810--10331861 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
10331800 TGAAGGAAAC
*
10331810 AAGAAAAAAAAAGAAAAA
1 AAGAGAAAAAAAGAAAAA
10331828 AAGATGAAAAAAA-ATAAAA
1 AAGA-GAAAAAAAGA-AAAA
*
10331847 AAGAGAGAAAAAGAA
1 AAGAGAAAAAAAGAA
10331862 TTCTTAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 13 0.45
19 16 0.55
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (18 bp):
AAGAGAAAAAAAGAAAAA
Found at i:10331839 original size:20 final size:20
Alignment explanation
Indices: 10331814--10331858 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
10331804 GGAAACAAGA
10331814 AAAAAAAAGAAAAAA-AGATG
1 AAAAAAAAGAAAAAAGAGA-G
*
10331834 AAAAAAAATAAAAAAGAGAG
1 AAAAAAAAGAAAAAAGAGAG
10331854 AAAAA
1 AAAAA
10331859 GAATTCTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 20 0.87
21 3 0.13
ACGTcount: A:0.82, C:0.00, G:0.13, T:0.04
Consensus pattern (20 bp):
AAAAAAAAGAAAAAAGAGAG
Found at i:10333100 original size:25 final size:24
Alignment explanation
Indices: 10333065--10333267 Score: 77
Period size: 25 Copynumber: 8.4 Consensus size: 24
10333055 TTTGAGTCTT
*
10333065 AAATGAGAATCTTTAAGATATTTTC
1 AAATGAAAATCTTTAAGA-ATTTTC
*
10333090 AAATGAAAATCTTT--GAGTTTT-
1 AAATGAAAATCTTTAAGAATTTTC
* *
10333111 AAATGAGAATTTTTAAGACATTTTC
1 AAATGAAAATCTTTAAGA-ATTTTC
* *
10333136 AAAT-AAGAATCTATGAGAATCTTTGAGTC
1 AAATGAA-AATCTTTAAGAA--TTT---TC
* * * *
10333165 TTAAATTACAATATTTAAGACATTTTT
1 --AAATGAAAATCTTTAAGA-ATTTTC
* *
10333192 AAAT-AAGAATCTTT--GAGTCTT-
1 AAATGAA-AATCTTTAAGAATTTTC
10333213 AAATGAAAATCTTTAAGACATTTTC
1 AAATGAAAATCTTTAAGA-ATTTTC
* * *
10333238 AAATGAGAACCTTT--GAGTTTT-
1 AAATGAAAATCTTTAAGAATTTTC
10333259 AAATGAAAA
1 AAATGAAAA
10333268 AAAATCTTCA
Statistics
Matches: 134, Mismatches: 24, Indels: 44
0.66 0.12 0.22
Matches are distributed among these distances:
21 31 0.23
22 13 0.10
23 10 0.07
24 10 0.07
25 47 0.35
26 3 0.02
27 1 0.01
29 2 0.01
30 3 0.02
31 12 0.09
32 2 0.01
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.38
Consensus pattern (24 bp):
AAATGAAAATCTTTAAGAATTTTC
Found at i:10333106 original size:46 final size:47
Alignment explanation
Indices: 10333055--10333336 Score: 246
Period size: 46 Copynumber: 6.1 Consensus size: 47
10333045 TTAATGAAGT
*
10333055 TTTGAGTCTTAAATGAGAATCTTTAAGATATTTTCAAATGAA-AATC
1 TTTGAGTCTTAAATGAGAATCTTTAAGACATTTTCAAATGAAGAATC
* *
10333101 TTTGAGTTTTAAATGAGAATTTTTAAGACATTTTCAAATAAGAATCTATGAGAATC
1 TTTGAGTCTTAAATGAGAATCTTTAAGACATTTTCAAAT--G-----A--AGAATC
* * * *
10333157 TTTGAGTCTTAAATTACAATATTTAAGACATTTTTAAAT-AAGAATC
1 TTTGAGTCTTAAATGAGAATCTTTAAGACATTTTCAAATGAAGAATC
* *
10333203 TTTGAGTCTTAAATGAAAATCTTTAAGACATTTTCAAATG-AGAACC
1 TTTGAGTCTTAAATGAGAATCTTTAAGACATTTTCAAATGAAGAATC
* * * *
10333249 TTTGAGTTTTAAATGA-AA-----AA-AAATCTTCAAAT-AAGAATG
1 TTTGAGTCTTAAATGAGAATCTTTAAGACATTTTCAAATGAAGAATC
* * * *
10333288 TTTGAGTCTTAAATGAGAATCTTTAATAAATCTTCAAATG-GGAATC
1 TTTGAGTCTTAAATGAGAATCTTTAAGACATTTTCAAATGAAGAATC
10333334 TTT
1 TTT
10333337 AAGACATTTT
Statistics
Matches: 195, Mismatches: 21, Indels: 40
0.76 0.08 0.16
Matches are distributed among these distances:
39 29 0.15
40 4 0.02
45 4 0.02
46 116 0.59
48 2 0.01
53 1 0.01
55 1 0.01
56 38 0.19
ACGTcount: A:0.40, C:0.09, G:0.13, T:0.38
Consensus pattern (47 bp):
TTTGAGTCTTAAATGAGAATCTTTAAGACATTTTCAAATGAAGAATC
Found at i:10333169 original size:56 final size:56
Alignment explanation
Indices: 10333092--10333208 Score: 171
Period size: 56 Copynumber: 2.1 Consensus size: 56
10333082 ATATTTTCAA
* * * *
10333092 ATGAAAATCTTTGAGTTTTAAATGAGAATTTTTAAGACATTTTCAAATAAGAATCT
1 ATGAGAATCTTTGAGTCTTAAATGACAATATTTAAGACATTTTCAAATAAGAATCT
* *
10333148 ATGAGAATCTTTGAGTCTTAAATTACAATATTTAAGACATTTTTAAATAAGAATCT
1 ATGAGAATCTTTGAGTCTTAAATGACAATATTTAAGACATTTTCAAATAAGAATCT
*
10333204 TTGAG
1 ATGAG
10333209 TCTTAAATGA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.39
Consensus pattern (56 bp):
ATGAGAATCTTTGAGTCTTAAATGACAATATTTAAGACATTTTCAAATAAGAATCT
Found at i:10333190 original size:102 final size:102
Alignment explanation
Indices: 10333055--10333246 Score: 287
Period size: 102 Copynumber: 1.9 Consensus size: 102
10333045 TTAATGAAGT
* * * * *
10333055 TTTGAGTCTTAAATGAGAATCTTTAAGATATTTTCAAATGAA-AATCTTTGAGTTTTAAATGAGA
1 TTTGAGTCTTAAATGACAATATTTAAGACATTTTCAAAT-AAGAATCTTTGAGTCTTAAATGAAA
*
10333119 ATTTTTAAGACATTTTCAAATAAGAATCTATGAGAATC
65 ATCTTTAAGACATTTTCAAATAAGAATCTATGAGAATC
* *
10333157 TTTGAGTCTTAAATTACAATATTTAAGACATTTTTAAATAAGAATCTTTGAGTCTTAAATGAAAA
1 TTTGAGTCTTAAATGACAATATTTAAGACATTTTCAAATAAGAATCTTTGAGTCTTAAATGAAAA
*
10333222 TCTTTAAGACATTTTCAAATGAGAA
66 TCTTTAAGACATTTTCAAATAAGAA
10333247 CCTTTGAGTT
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
101 2 0.03
102 78 0.98
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.39
Consensus pattern (102 bp):
TTTGAGTCTTAAATGACAATATTTAAGACATTTTCAAATAAGAATCTTTGAGTCTTAAATGAAAA
TCTTTAAGACATTTTCAAATAAGAATCTATGAGAATC
Found at i:10333262 original size:21 final size:21
Alignment explanation
Indices: 10333188--10333538 Score: 101
Period size: 21 Copynumber: 16.0 Consensus size: 21
10333178 TTTAAGACAT
*
10333188 TTTTAAATAAGAATCTTTGAG
1 TTTTAAATGAGAATCTTTGAG
* * *
10333209 TCTTAAATGAAAATCTTTAAGACA
1 TTTTAAATGAGAATCTTT--GA-G
*
10333233 TTTTCAAATGAGAACCTTTGAG
1 TTTT-AAATGAGAATCTTTGAG
*** *
10333255 TTTTAAATGA-AA---AAAAA
1 TTTTAAATGAGAATCTTTGAG
* * *
10333272 TCTTCAAATAAGAATGTTTGAG
1 T-TTTAAATGAGAATCTTTGAG
* *
10333294 TCTTAAATGAGAATCTTT-AA
1 TTTTAAATGAGAATCTTTGAG
* *
10333314 TAAATCTTCAAATGGGAATCTTTAAGACA
1 T---T-TT-AAATGAGAATCTTT--GA-G
*
10333343 TTTTCAAATGAGAACCTTTGAG
1 TTTT-AAATGAGAATCTTTGAG
*
10333365 TTTTAAATGAGAA-----GAAA
1 TTTTAAATGAGAATCTTTG-AG
* *
10333382 TCTGTAAATAAGAATCTTTGAG
1 T-TTTAAATGAGAATCTTTGAG
* *
10333404 TCTTAAATGAGAATCTTTAAGAAA
1 TTTTAAATGAGAATCTTT--G-AG
* *
10333428 TTCTCAAATGAAAATCTTTGAG
1 TT-TTAAATGAGAATCTTTGAG
* * * ** *
10333450 TCTTAAATAAAAATCTGTAAAAAA
1 TTTTAAATGAGAATCT-T--TGAG
*
10333474 TTCTCAAATGAGAATCTTTGAG
1 TT-TTAAATGAGAATCTTTGAG
*
10333496 TCTTTAAATAAGAATCTTTGAG
1 T-TTTAAATGAGAATCTTTGAG
* *
10333518 TTTCAAATGAAAATCTTTGAG
1 TTTTAAATGAGAATCTTTGAG
10333539 ATGTGAAACC
Statistics
Matches: 238, Mismatches: 58, Indels: 68
0.65 0.16 0.19
Matches are distributed among these distances:
16 1 0.00
17 4 0.02
18 17 0.07
19 2 0.01
20 4 0.02
21 86 0.36
22 35 0.15
23 10 0.04
24 10 0.04
25 65 0.27
26 1 0.00
28 1 0.00
29 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (21 bp):
TTTTAAATGAGAATCTTTGAG
Found at i:10333327 original size:25 final size:25
Alignment explanation
Indices: 10333269--10333361 Score: 86
Period size: 25 Copynumber: 3.9 Consensus size: 25
10333259 AAATGAAAAA
* *
10333269 AAATCTTCAAATAAGAATGTTT--G
1 AAATCTTCAAATGAGAATCTTTAAG
* *
10333292 -AGTCTT-AAATGAGAATCTTTAAT
1 AAATCTTCAAATGAGAATCTTTAAG
*
10333315 AAATCTTCAAATGGGAATCTTTAAG
1 AAATCTTCAAATGAGAATCTTTAAG
* * *
10333340 ACATTTTCAAATGAGAACCTTT
1 AAATCTTCAAATGAGAATCTTT
10333362 GAGTTTTAAA
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
21 12 0.22
22 5 0.09
24 5 0.09
25 33 0.60
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (25 bp):
AAATCTTCAAATGAGAATCTTTAAG
Found at i:10333356 original size:110 final size:110
Alignment explanation
Indices: 10333213--10333446 Score: 382
Period size: 110 Copynumber: 2.1 Consensus size: 110
10333203 TTTGAGTCTT
10333213 AAATGAAAATCTTTAAGACATTTTCAAATGAGAACCTTTGAGTTTTAAATGAAAAAAAATCT-TC
1 AAATGAAAATCTTTAAGACATTTTCAAATGAGAACCTTTGAGTTTTAAATGAAAAAAAATCTGT-
* *
10333277 AAATAAGAATGTTTGAGTCTTAAATGAGAATCTTTAATAAA-TCTTC
65 AAATAAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGAAATTC-TC
** * *
10333323 AAATGGGAATCTTTAAGACATTTTCAAATGAGAACCTTTGAGTTTTAAATGAGAAGAAATCTGTA
1 AAATGAAAATCTTTAAGACATTTTCAAATGAGAACCTTTGAGTTTTAAATGAAAAAAAATCTGTA
10333388 AATAAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGAAATTCTC
66 AATAAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGAAATTCTC
10333433 AAATGAAAATCTTT
1 AAATGAAAATCTTT
10333447 GAGTCTTAAA
Statistics
Matches: 114, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
110 111 0.97
111 3 0.03
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.34
Consensus pattern (110 bp):
AAATGAAAATCTTTAAGACATTTTCAAATGAGAACCTTTGAGTTTTAAATGAAAAAAAATCTGTA
AATAAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGAAATTCTC
Found at i:10333443 original size:25 final size:25
Alignment explanation
Indices: 10333408--10333492 Score: 79
Period size: 25 Copynumber: 3.6 Consensus size: 25
10333398 TTTGAGTCTT
*
10333408 AAATGAGAATCTTTAAGAAATTCTC
1 AAATGAAAATCTTTAAGAAATTCTC
* *
10333433 AAATGAAAATCTTT--G--AGTCTT
1 AAATGAAAATCTTTAAGAAATTCTC
* * *
10333454 AAATAAAAATCTGTAAAAAATTCTC
1 AAATGAAAATCTTTAAGAAATTCTC
*
10333479 AAATGAGAATCTTT
1 AAATGAAAATCTTT
10333493 GAGTCTTTAA
Statistics
Matches: 45, Mismatches: 11, Indels: 8
0.70 0.17 0.12
Matches are distributed among these distances:
21 16 0.36
23 1 0.02
25 28 0.62
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.33
Consensus pattern (25 bp):
AAATGAAAATCTTTAAGAAATTCTC
Found at i:10333445 original size:46 final size:46
Alignment explanation
Indices: 10333394--10333538 Score: 199
Period size: 46 Copynumber: 3.2 Consensus size: 46
10333384 TGTAAATAAG
*
10333394 AATCTTTGAGTCTTAAATGAGAATCTTTAAGAAATTCTCAAATGAA
1 AATCTTTGAGTCTTAAATAAGAATCTTTAAGAAATTCTCAAATGAA
* * * *
10333440 AATCTTTGAGTCTTAAATAAAAATCTGTAAAAAATTCTCAAATGAG
1 AATCTTTGAGTCTTAAATAAGAATCTTTAAGAAATTCTCAAATGAA
*
10333486 AATCTTTGAGTCTTTAAATAAGAATCTTT--G-AGTT-TCAAATGAA
1 AATCTTTGAGTC-TTAAATAAGAATCTTTAAGAAATTCTCAAATGAA
10333529 AATCTTTGAG
1 AATCTTTGAG
10333539 ATGTGAAACC
Statistics
Matches: 88, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
43 18 0.20
44 3 0.03
46 53 0.60
47 14 0.16
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36
Consensus pattern (46 bp):
AATCTTTGAGTCTTAAATAAGAATCTTTAAGAAATTCTCAAATGAA
Found at i:10333988 original size:19 final size:19
Alignment explanation
Indices: 10333964--10334004 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
10333954 CAGTAAATTC
10333964 TTACGAAGCTAAAAGGTTA
1 TTACGAAGCTAAAAGGTTA
10333983 TTACGAAGCTAAAAGGTTA
1 TTACGAAGCTAAAAGGTTA
10334002 TTA
1 TTA
10334005 GGAATCTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (19 bp):
TTACGAAGCTAAAAGGTTA
Found at i:10334158 original size:41 final size:40
Alignment explanation
Indices: 10334098--10334245 Score: 145
Period size: 40 Copynumber: 3.6 Consensus size: 40
10334088 TGTCAATGGA
* *
10334098 CCTTTTATTTTTTAAAAGTTATTGTGCCTTTATTTAGATGAG
1 CCTTTTA-TTTTTAAAAGTTGTTGTG-CTTTATTTAGAAGAG
* *
10334140 CCTTTTATTTTTAAAAGTTGTTGTGCTTCTGTTTAGAGGAG
1 CCTTTTATTTTTAAAAGTTGTTGTGCTT-TATTTAGAAGAG
* * *
10334181 -CTTTTATTTTTCAAAGTTGTTGAGACTCTATTTAGAAGAG
1 CCTTTTATTTTTAAAAGTTGTTGTG-CTTTATTTAGAAGAG
* * *
10334221 CATTATTTATTTTTCAAAGTCGTTG
1 C-CT-TTTATTTTTAAAAGTTGTTG
10334246 AGCCTCTGTT
Statistics
Matches: 91, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
40 35 0.38
41 29 0.32
42 8 0.09
43 19 0.21
ACGTcount: A:0.24, C:0.10, G:0.17, T:0.49
Consensus pattern (40 bp):
CCTTTTATTTTTAAAAGTTGTTGTGCTTTATTTAGAAGAG
Found at i:10334197 original size:40 final size:42
Alignment explanation
Indices: 10334098--10334277 Score: 154
Period size: 43 Copynumber: 4.3 Consensus size: 42
10334088 TGTCAATGGA
* * * *
10334098 CCTTTTATTTTTTAAAAGTTATTGTGCCTT-TATTTAGATGAG
1 CCTTTTA-TTTTTAAAAGTTGTTGAGACTTCTATTTAGAGGAG
* *
10334140 CCTTTTATTTTTAAAAGTTGTTGTG-CTTCTGTTTAGAGGAG
1 CCTTTTATTTTTAAAAGTTGTTGAGACTTCTATTTAGAGGAG
* *
10334181 -CTTTTATTTTTCAAAGTTGTTGAGAC-TCTATTTAGAAGAG
1 CCTTTTATTTTTAAAAGTTGTTGAGACTTCTATTTAGAGGAG
* * * * *
10334221 CATTATTTATTTTTCAAAGTCGTTGAG-CCTCTGTTTAGAGGAG
1 C-CT-TTTATTTTTAAAAGTTGTTGAGACTTCTATTTAGAGGAG
*
10334264 TCTTATTTATTTTT
1 -CCT-TTTATTTTT
10334278 TTTTAAAAAG
Statistics
Matches: 120, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
40 37 0.31
41 28 0.23
42 9 0.08
43 45 0.38
44 1 0.01
ACGTcount: A:0.23, C:0.11, G:0.17, T:0.49
Consensus pattern (42 bp):
CCTTTTATTTTTAAAAGTTGTTGAGACTTCTATTTAGAGGAG
Found at i:10334254 original size:83 final size:82
Alignment explanation
Indices: 10334099--10334277 Score: 207
Period size: 83 Copynumber: 2.1 Consensus size: 82
10334089 GTCAATGGAC
* * * * * *
10334099 CTTTTATTTTTTAAAAGTTATTGTGCCTTTATTTAGATGAGCCTTTTATTTTTAAAAGTTGTTGT
1 CTTTTA-TTTTTAAAAGTTATTGAGACTCTATTTAGAAGAGCCTTTTATTTTTAAAAGTCGTTGA
*
10334164 GCTTCTGTTTAGAGGAG-
65 GCCTCTGTTTAGAGGAGT
* * * *
10334181 CTTTTATTTTTCAAAGTTGTTGAGACTCTATTTAGAAGAGCATTATTTATTTTTCAAAGTCGTTG
1 CTTTTATTTTTAAAAGTTATTGAGACTCTATTTAGAAGAGC-CT-TTTATTTTTAAAAGTCGTTG
10334246 AGCCTCTGTTTAGAGGAGT
64 AGCCTCTGTTTAGAGGAGT
10334265 CTTATTTATTTTT
1 C-T-TTTATTTTT
10334278 TTTTAAAAAG
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
81 29 0.36
82 7 0.09
83 34 0.42
84 1 0.01
85 1 0.01
86 9 0.11
ACGTcount: A:0.23, C:0.10, G:0.17, T:0.50
Consensus pattern (82 bp):
CTTTTATTTTTAAAAGTTATTGAGACTCTATTTAGAAGAGCCTTTTATTTTTAAAAGTCGTTGAG
CCTCTGTTTAGAGGAGT
Found at i:10335097 original size:9 final size:9
Alignment explanation
Indices: 10335078--10335122 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
10335068 ATTTATTTTC
10335078 AAAAT-AAA
1 AAAATCAAA
10335086 AAAATCAAA
1 AAAATCAAA
10335095 AAAATC--A
1 AAAATCAAA
*
10335102 AAAATAAAA
1 AAAATCAAA
*
10335111 AAAATTAAA
1 AAAATCAAA
10335120 AAA
1 AAA
10335123 TATTGATAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
7 6 0.19
8 5 0.16
9 21 0.66
ACGTcount: A:0.82, C:0.04, G:0.00, T:0.13
Consensus pattern (9 bp):
AAAATCAAA
Found at i:10335124 original size:17 final size:17
Alignment explanation
Indices: 10335078--10335124 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
10335068 ATTTATTTTC
* *
10335078 AAAATAAAAAAATCAAA
1 AAAATTAAAAAATAAAA
*
10335095 AAAA-TCAAAAATAAAA
1 AAAATTAAAAAATAAAA
10335111 AAAATTAAAAAATA
1 AAAATTAAAAAATA
10335125 TTGATAAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 13 0.52
17 12 0.48
ACGTcount: A:0.81, C:0.04, G:0.00, T:0.15
Consensus pattern (17 bp):
AAAATTAAAAAATAAAA
Found at i:10335552 original size:55 final size:53
Alignment explanation
Indices: 10335492--10335737 Score: 201
Period size: 55 Copynumber: 4.5 Consensus size: 53
10335482 AATAGAAAAT
10335492 ATTTTTAAATTGACCCAAATGGTGGAAACTTTAGAAATCCAACAAAAAAAAGAGA
1 ATTTTTAAATTGACCCAAATGGTGGAAACTTTAGAAATCCAA-AAAAAAAAGA-A
* * * *** *
10335547 ATTTTTAAATAGGCCCAAATGATGGAAAAC-TTAGAAATTTTGAAAAAAAAA-AT
1 ATTTTTAAATTGACCCAAATGGTGG-AAACTTTAGAAA-TCCAAAAAAAAAAGAA
* * * *
10335600 ATTTCTAAATTGACCCAAATGATGAAAAATTTAGAAATCCAACAAACAAAGAGAGAA
1 ATTTTTAAATTGACCCAAATGGTGGAAACTTTAGAAATCCAA-AAA-AAA-A-AGAA
* * * * * * *
10335657 A-TTCTAAATAGGCCCAAATGGTGAAAATTTTAAAAATTCAAAAAAAAAAGAA
1 ATTTTTAAATTGACCCAAATGGTGGAAACTTTAGAAATCCAAAAAAAAAAGAA
* *
10335709 ATATTTCTAATTTGACCCAAATTGTGGAA
1 AT-TTT-TAAATTGACCCAAATGGTGGAA
10335738 TAATTAGATA
Statistics
Matches: 152, Mismatches: 28, Indels: 22
0.75 0.14 0.11
Matches are distributed among these distances:
52 10 0.07
53 32 0.21
54 9 0.06
55 58 0.38
56 41 0.27
57 2 0.01
ACGTcount: A:0.50, C:0.11, G:0.13, T:0.26
Consensus pattern (53 bp):
ATTTTTAAATTGACCCAAATGGTGGAAACTTTAGAAATCCAAAAAAAAAAGAA
Done.