Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 7 of 129
Found at i:1181171 original size:26 final size:26
Alignment explanation
Indices: 1181142--1181194 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1181132 GTTGACTTAG
1181142 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1181168 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1181194 G
1 G
1181195 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1183919 original size:26 final size:26
Alignment explanation
Indices: 1183883--1183933 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
1183873 GTAGACTTAG
1183883 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1183909 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
1183934 TGATCGGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1186324 original size:901 final size:896
Alignment explanation
Indices: 1182863--1187129 Score: 5328
Period size: 901 Copynumber: 4.8 Consensus size: 896
1182853 GAACACGTCC
* * * * * * *
1182863 ATCAGA-CTAGACCAAGGGTTACGGCAGCAGGAATGGTAGCTCGTAGAGGGGGACCCGACCAATC
1 ATCAGATC-AGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATC
* ** * * *
1182927 CTCGACTTGTGCATCCAGCCCCTCTGGCC-AGCTGAGCGCCC-CACTCTCGTTTCGTGGGTTGAC
65 CCCGACTTACGCATCCCGCCCCTCTGGCCGA-CTGAGCGCCCGCACGCTCATTTCGTGGGTTGAC
* *
1182990 TTTGGCATATGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCAGACC
129 TTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCC-AGTCTAAGATCTGACC
* ** * * * ** * *
1183055 GGACTAAGGGTTGCGACACCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAGTTTTCTTTGCC
193 AGACCGAGGGTTG-GGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCC
* * * * * * *
1183120 GGGGCACCAACGCCGAAACATC-CACGGAGAACCTTATCGGCGACATTGGGGTTCCGGCGATCGG
257 GGGGCACCATCGCCGGAGCATCAC-CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
* * * *
1183184 GGGAGCTGGGGGGTGTGTGCACATGATGTGCAATGGGTGCTGGTA-TTGGCCCTTATATTGGCCC
321 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
1183248 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
386 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
1183313 GGC-GCCAGTAGCCATT-AAGTGTCTGAAAT-GGGATACTTTTTTTCAAATGGTCACAAAATCTT
451 -GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTT
*
1183375 GTACACTTTGAGTTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCT
514 GTACACTTTGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * *
1183439 ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAGAATTTTAAAAAATTCCAAACCGTAAAAAGTTTC
578 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
* * * * *
1183504 AAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCACGAAACTTCACGTGAAAGCTTAAGGGAC
643 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGAC
* * *
1183569 AATTTTATGAATTTA-AAACCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
708 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* * *
1183633 CCCACCTACCACCTTATCGATCCACGGCTTGCGTATCCCATCTCTCTGGCCAACGTA-TGCCCA-
773 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCCAACGTAGTGCCCAC
*
1183696 --CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAG
838 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * **
1183752 ATCGGACCAGACCGAGGGTTGCGGCAACA-GATAGGCAGCACGTAGAGGGGGACCCGGTCGAT-C
1 ATCAGATCAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCC
* * * * *
1183815 CCTAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTAGACT
66 CCGA-CTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACT
* * * * * *
1183880 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTATGATCGGATCG
130 TAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATT-CCAGTCTAAGATCTGACCA
* * * **
1183945 GACCAAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGTCACTTTTTTCTTCGCTA
194 GACCGAGGGTTG-GGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCG
* * * *
1184010 GGGCACCATCGCTGGAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATTGGGG
258 GGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
* *
1184075 GCGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCT
323 GGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * *
1184140 CTATCCCTCATAAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTG
387 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * ** *
1184205 CTACCAGTGGCCAACAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATTCT
452 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC-TTGT
*
1184270 ACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
516 ACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * *
1184335 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCTAACCGCAAAATGTTTCCAA
581 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
* *
1184400 AATCGTGAAAAATAGAAAACGTGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGAGACCA
646 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAG-GACCA
* *
1184464 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACG
710 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
** * *
1184529 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTTA-CCAACGTAGTACCCGCC
775 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTC-TAGCCAACGTAGTGCCC-AC
* *
1184593 CGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAAG
838 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
1184652 ACCAGATCGGACCGAGGGTTGCGACAGCAGGATTGACAGCACGTAGAGGGGGACCTGACCGATCC
1 ATCAGATCAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCC
* * * * *
1184717 TCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCATGGTTTGACTT
66 CCGACTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTT
** *
1184782 AGGCATACAGAGTTCATTCCCAGTCTAACCATACGAAGTTCATTCCAAGTCTAAGA--T---C-G
131 AGGCATATGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCC-AGTCTAAGATCTGACCAG
* * * * * * *
1184841 ---GA----T---CAG-GCATGCTAGGCTCAGGCATGTGCTAGTGTCACTTTTTTATTCGCCAGG
195 ACCGAGGGTTGGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGG
* * * * *
1184895 GCACCATCACCGGAGCATCACCAGAGAACCTGACCGACGACATTAGGGTTCCGACGATCGGGGGG
260 GCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGG
*
1184960 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATAT--TCCCCT
325 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT-TGGCCCCCT
*
1185023 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCT
389 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
1185088 GCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
454 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * *
1185153 CTTTGAGCTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAACAAAAGGATCACGTCTACCATG
519 CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
1185218 TTTGGGGCAAAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACTGTAAAAAGTTTTAAAAAT
584 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
*
1185283 CATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGT
649 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGT
***
1185348 ATGAATTTACAAGCCATAAAAATGGCATTGGCATC-CAGAAATATGAAGATGTGGAAAAACCCAC
714 ATGAATTTACAAGCCATAAAAATGGCATTGGCA-CGCAGAAATATGAAGATGTGCCTAAACCCAC
* * **
1185412 CTACCACCCTATCGATCCACGGGTTGTGCATCCCATCTCTCTAGCCGGCGTAGTGCCCGCCAGCC
778 CTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCCAACGTAGTG--C-CCA-CC
*
1185477 TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAAG
839 -GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * * * * * *
1185536 ATCGGATCAAACTGAGGGTTGTGGTACCAGGATTGGCAGTAGGCAGATGGGGACTCGACCAATCC
1 ATCAGATCAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCC
* * ** ** *
1185601 CCGAATTACGCATCCCACCCCTCTGGATGACTGAGCGCTTGGACGCTCATTTCGTGGGTTGACTT
66 CCGACTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTT
*
1185666 AGGCATATGGAGTTCATTCCCAGTCAAAGCATACGAAGTTCATTCCAGTCTAAGATCTGACCAGA
131 AGGCATATGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCAGTCTAAGATCTGACCAGA
* *
1185731 CCGAGGGTTGGGCAGCACATGCTAGGCTCGGGCATGTGCT-GTACCACATTTTTCTTCGTCGGGG
196 CCGAGGGTTGGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGG
** * *
1185795 CACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCTGGGGGA
261 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* *
1185860 TCGGGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
326 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * *
1185925 CCCTCATCAAGCCTCGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTTACAAGTTTGCTGC
391 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
1185990 CAGTAGCCATTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
456 CAGTAGCCA-TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * ** *
1186055 TTCGAG-TTTTAGCTGAATTTTTTTGTGCATCCCAAAAAAAATACAAGGATCATATCTACCATGT
520 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
1186119 TTGGGGCCAAAACCCCTTCCAAAAAAATTTTAAAAAAATCCCGAACCGCAAAACGTTTCAAAAAT
585 TTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
** * * * *
1186184 TGTAAAAAATAGAAAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTAT
649 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGT
** * *
1186249 ATGAATTTACAAGCCATAAAAATATCATTGGCACGTAGAAATATGAAGATGTGGCTAAACCCACC
714 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
** * * * * * ** * * *
1186314 TAGTACCCTATCGATCAATGGCTTGCGCATCCAATCTCTCTGGTCGGCATGGTGCCTACCCGCCC
779 TACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCCAACGTAGTGCCCA-CCGCCC
* * *
1186379 GCCCGCTCGTTCCGTCGGTTGGCTTAGCCATGCGGAGTTCATTCCCAGTCTAAG
843 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * **
1186433 ATCAGA-CTAGATCGAGGGTTGCAGTAGCAGGA-TCGCTAGCACGCGGAGGGGGACCCAATTGAT
1 ATCAGATC-AGACCGAGGGTTGCGGCAGCAGGATTGGC-AGCACGCAGAGGGGGACCCGACCGAT
* * * * * * **
1186496 TCCCGGCTTACGCATCCCGCCCCTTTGGTCGGCTAAGCGCCCGCACGCTTGTTTCGTGGGTTGAC
64 CCCCGACTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGAC
1186561 TTAGGCATATGGAGTTCATTCCCAG--T---C-T---AAG--------A-TC---G----GACCA
129 TTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCAGTCTAAGATCTGACCA
* * * * *
1186601 GACCGAGGGTTCCGGCAGCACATGCTGGGCTCGAGCTTGTGCTGGTGCCACATTTTTCTTCTCCG
194 GACCGAGGGTT-GGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCG
* * ** *
1186666 GGGCACCATCACCGGAGCATCGCCACAGAACCTGACCGGCGGCATTGTGGTTCCGACGATCGGGG
258 GGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
*
1186731 GGGCCGGGGGGTGT--GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTC
323 GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
1186794 TATCCCTCATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
388 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * *
1186859 TGCCAGTAGCCATTAAAGTTTCTGAAATGGGGAGACTTTTTACAAATGGTCACAAAATCTTGTAC
453 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* ** * * *
1186924 ACGTCAAGTTTTTAGCTGAATTTTTTTATGCATTCCAACAAAAATACAAGGATCACGTCTAACAA
518 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * * * **
1186989 GTTTGGGACCAAACCCCCTTCTGAAAAAATTTGAAAAAATCTCGAACCGTAAAAAGTTTTGAAAA
583 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * * *
1187054 TCATGAAAAATAGAAAACGAGT-GTCCTACCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
648 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTG
1187118 TATGAATTTACA
713 TATGAATTTACA
1187130 GGTTTGCTGC
Statistics
Matches: 2954, Mismatches: 363, Indels: 141
0.85 0.10 0.04
Matches are distributed among these distances:
870 48 0.02
871 101 0.03
872 212 0.07
873 27 0.01
874 89 0.03
876 1 0.00
879 4 0.00
880 281 0.10
881 122 0.04
882 53 0.02
883 119 0.04
884 201 0.07
885 1 0.00
887 3 0.00
888 63 0.02
889 209 0.07
890 42 0.01
891 91 0.03
892 54 0.02
893 181 0.06
894 96 0.03
895 6 0.00
896 6 0.00
897 170 0.06
898 5 0.00
899 173 0.06
900 214 0.07
901 379 0.13
902 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
ATCAGATCAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACCGATCC
CCGACTTACGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTT
AGGCATATGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCAGTCTAAGATCTGACCAGA
CCGAGGGTTGGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGG
CACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTAGCCAACGTAGTGCCCACCGCCCGCC
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
Found at i:1188055 original size:26 final size:26
Alignment explanation
Indices: 1188019--1188071 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1188009 GTTGACTTAG
*
1188019 GCATACAGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1188045 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1188071 G
1 G
1188072 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1189660 original size:26 final size:26
Alignment explanation
Indices: 1189624--1189675 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1189614 TGACTTAGGC
*
1189624 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGAAGTTCATTCCCAATCTAAGA
1189650 ATACGAAGTTCATTCCCAATCTAAGA
1 ATACGAAGTTCATTCCCAATCTAAGA
1189676 TTGGATCGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAATCTAAGA
Found at i:1190557 original size:26 final size:26
Alignment explanation
Indices: 1190528--1190580 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1190518 GTTAACTTGG
* *
1190528 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
1190554 GCATATGGAGTTCGTTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1190580 G
1 G
1190581 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1191456 original size:26 final size:26
Alignment explanation
Indices: 1191427--1191479 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1191417 GTTGACTTAC
1191427 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
1191453 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1191479 G
1 G
1191480 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1192533 original size:901 final size:900
Alignment explanation
Indices: 1188744--1194879 Score: 7849
Period size: 906 Copynumber: 6.8 Consensus size: 900
1188734 GTTGGCTTAG
** * * ** *
1188744 GCATAC-AGAGTTCATTTGCAGTCTAAGATCGGACCGGACCGAGGGTTTTGATAGCACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCACATGCTGG
* * * * *
1188808 GCTCGGGCATTTGCTGGTGCCGTAATTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGGAG
** *
1188873 AACCTGACCG-GTAGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
1188937 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTGGAA-AACTC
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CAAGAACTC
*
1189001 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
1189066 ACGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTTGAGTTTTTAGCTGATTTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCGGA-TTTTTT
* *
1189131 TGTGCATCCCAACAAAAATACAAGGATCACGTCTAAAAAAGTTTGAGGCCAAAACTCCTTCCGAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCT--AAAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
1189196 AAAATTTTCAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
1189261 CTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGTATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * * *
1189326 GCATTGGCATGCAGAAATATGAAGATGTGTCTAAACCCACCTACCACACTATCAATGCACGGCTT
581 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
1189391 GCGTATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCTGCCTGCTCGTTTCGTCGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGT-CCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTT
* * * *
1189456 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGACAGCAGG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGG
** * * * * * *
1189521 ATCGGCGTCACGTAGAGGGGGACCCGGCCGAT-CCTCGGCTTGTGCGTTCCGCCCCTCTGGCC-A
775 ATC-GCAACACGCAGAGAGGGACCCAGCCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGA
*
1189584 GTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
838 -CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * ** * *
1189648 GAATACGAAGTTCATTCCCAATCTAAGATTGGATCGGA-TCGAGGGTTGCGACAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTACGACAGCACATGCTGG
* * * * *
1189712 GCTCGGGTATGTGCTAGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTACCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGGAG
* * *
1189777 AACCTGACTG-GCGGCATTAGGGTTCC-AGCGATCGGGGGGGCCAGGGAGGGTGTGCGCAAATGA
130 AACCTGACCGAGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCC-GGG-GGGTGTGCGCACATGA
* * * *
1189840 TGTGTGATGGGTGTTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCAAGAAC
192 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
1189905 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTGCTGCCAGTAGCCATTAAAGTGTCT
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG-TTTGCTGCCAGTAGCCATTAAAGTGTCT
*
1189970 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCGGATTTT
321 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCGGATTTT
* * *
1190035 TTATGTGCATGCCAACAAAAATACAAGGATCATGTCTAAAACGTTTGGGGCCATAACTCCTTCTG
386 TT-TGTGCATGCCAACAAAAATACAAGGATCACGTCTAAAA-GTTTGGGGCCAAAACTCCTTCCG
* *
1190100 AAAAAATTTTAAAAAATCCCCAGCCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
449 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
1190165 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
1190230 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
579 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
1190295 TTGCGAATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCCTCCCGCTCGCACGCTCGTTTCATCGG
644 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-CCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGG
* ** * **
1190360 TTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATTGGACCAGACTGAGGGTTGCGGTAGCA
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCA
** * * * **
1190425 GGATCGACGGCACGTAGAGGGGGACCC-GACCGATCCCTGGCTTGCACATCCTACCCCTCTGGCC
773 GGATCG-CAACACGCAGAGAGGGACCCAG-CCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
1190489 GGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTAACTTGGGCATACGTAGTTCATTCCCAGTCTAA
836 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * * * * **
1190554 GCATATGGAGTTCGTTCCCAATCTAAGATCAGACTGGACTGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCACATGCTGGG
* * * *
1190619 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGGTGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * * *
1190684 ACCTAATCGA-CAGCATTGGGGTTCCAACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGAGCGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGT
* * * * * *
1190748 GAGTTGGGGGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCGCATCAAACCTCTAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
** *
1190813 CAATCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
1190878 TTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-GGATTTTTTT
* * * * *
1190943 GTGCATGCCAACAAAAATACAAAGAT-ACGTCTACAAAGTTTGGGGACAAAAATCTTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTA-AAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
1191007 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * * *
1191072 TGCCATGAAACTTTATGCGAAGGCTTAAGGGACAAATGCATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
1191137 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * ** * *
1191202 GCATCCCGTCTCTCTGGCAGGCATAGT---GCTCGTCTGCCCATCCGTTCGTTTTATCGGTTGGC
648 GCATCCCGTCTCTCTGGCCGGCGTAGTCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGC
* * ** * ** * *
1191264 TTAGGCATACAGAGTTCATTCCCAATCTAAGATTGGACCGGAATGAGGGTTACGATAGCAGGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATC
* * * *
1191329 GACAACACGCAGAGGGGGCCCCGGCCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGACTGA
778 G-CAACACGCAGAGAGGGACCCAGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGA
** * * *
1191394 GCGCTTGTACGCTCGTTTCGTGAGTTGACTTACGCATACGAAGTTCATTCCCAGTCTAA
842 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * ** * *
1191453 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGACAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCACATGCTGGG
* * * * * * **
1191518 CTGGGGCATGTGCTGGTGTCGCATTTCTCTTCACCAGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * * *
1191583 ACCTGACCG-GCAGCATTGGGGTTCCGGCGATC-AGGGGGCTGGGGGGTGTGCGCATATGATGTG
131 ACCTGACCGAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
1191646 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
1191711 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
1191776 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCGGATTTTTTATG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCGGATTTTTT-TG
* * *
1191841 TGCATGCCAACAAAAATACAAGGATCATGTCTAAAACGTTTGGGGCCATAACTCCTTCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTAAAA-GTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
1191906 ATTTTAAAAAATCCCCAGCCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
454 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
1191971 GCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
1192036 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTGTCGATCCAC-GCTTGCG
584 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
1192100 CATCCTGTCTCTCTGGCCGGCGTGGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTAATCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGT-CCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGC
* * * * * * * * *
1192165 TCAGGCATACGGAGTTCATTCCCAGTCTCATATCA-AACTGAACCGAGGATTACGGCAGCAAGAT
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGACAGCAGGAT
* * * * * ** * *
1192229 CAGCAACATGCAAAGAGAGTCCCAGTCGATCTCC-AACTTACGCATCCCGCCCCTCTGGTCGACT
777 C-GCAACACGCAGAGAGGGACCCAGCCGATC-CCTGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* *
1192293 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * **
1192354 GCATACAAAGTTCATTCCTAGTCTAAGATCAGATTGGACTGAGGGTTACGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCACATGCTGGG
* * ** * ***
1192419 CTCAGGCATGTGTTGGTGCCGCATTTTTCTTCATTAGGGCACCATCGCCAGAGCATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGGAGA
1192484 ACCTGA-CGAGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
1192547 CGATGGGTGCTTGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
1192612 ACCCCCTTAAAGAGCATTAGTGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
1192677 GGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-GGATTTTTTTG
* * * *
1192742 TGCTTGCCTACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTT-CGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTA-AAAGTTTGGGGCCAAAACTCCTTCCG-AAAA
* * *
1192806 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA-AAAAAACGAGTCGTCT
453 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
1192870 TCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
1192935 ATTGGCAGACGGAAAGACGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGC
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** *
1193000 GCATCCCGTCTCTCTCACCGGCGTAGT-------GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
648 GCATCCCGTCTCTCTGGCCGGCGTAGTCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGC
*
1193058 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGTAGGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATC
* ** * * * ** * * * *
1193123 GACAGCACATAGAGGGGGACCCAGTCGATCCCCGGCTTGCTTATTCCGCCCCTCTGGTCAATTGA
778 G-CAACACGCAGAGAGGGACCCAGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGA
* ** * * ** *
1193188 GCGCTCGCACATTCGTTTCGTGTGTTGATTTAGGCATACGAAGTTCGGTCCTAGTCTAA
842 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* ** *
1193247 GCATACGAAGTTCATTCTCAGTCTAAGATC-GAACTAGAC-CAGGGTTACGACAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCGGACTGAGGGTTACGACAGCACATGCTGG
* ** * *
1193310 GCTCGGTCATGCACTGGTGCTGCATTTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGA
65 GCTCGGGCATGTGCTGGTGCCGCA-TTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGGA
* * *
1193375 GAACCT-AACTAGCGGCATTGGGGTTTCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGAT
129 GAACCTGACCGAGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGAT
* **
1193438 GTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
1193503 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
1193568 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-GGATT-TT
* * * * *
1193633 TTT-TGCCTACCAACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-AAAGTTTGGGGCCAAAACTCCTTCCGA
* * * ** * *
1193697 AAAAGTTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTAAAAAATAAAAAACGAGTCG
450 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
1193762 TCTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** *
1193827 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACT
580 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * ** *
1193892 TGCGCATCCTGTCTCACTGACCGACATAGTACCCGCCCACCCGCCCGCCCGCTCGTTTGGTCGGA
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGT-CCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGT
* * *
1193957 TGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGTAG
709 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAG
* * ** * *
1194022 GATCGGTAGCACGCAGAGAAAGACCCAACCGATCCCTGGCTTGCGCATCTCGCCCCTCTGGCCTG
774 GATC-GCAACACGCAGAGAGGGACCCAGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC-G
* * ** *
1194087 -CTGAGCGCCCACACGCTCGTTTCATGGGTTGACTGCGGCATACGGAGTTCATT--C---CT-A
837 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * *
1194144 G--T-CTAAG---ATT----G----A-ATCGGACC-GA---AAGGTTAC-AGCAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGA-CAGCACATGCTGG
* * * * ** *
1194189 GCTTGGGAATGTGCTGGTGCCACATTTTGCTTCGCCAGGGCACCAT---C---G--T---CGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGGAG
*
1194243 AACCTGATCGA-CGGCATTGGGGTTCC-AGCGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGA
130 AACCTGACCGAGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCC-G-GGGGGTGTGCGCACATGA
**
1194306 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
192 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
* * * *
1194371 TCACCCCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTACCCATTAAAGAGTCTG
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
1194436 AAATTGGGACACTTTTTTGCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTT
322 AAATGGGGACACTTTTTT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCGGA-TTT
* * *
1194501 TTTTGTGCAAGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-AAAGTTTGGGGCCAAAACTCCTTCCG
* **
1194565 AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
449 AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
1194630 GTCTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
514 GTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
**
1194695 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
578 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ** * * * *
1194760 CTTGCGCATCCCCTCTCTCTGGTCGGCGTA---CTACCCGCCCACCCGCCTGTTCGTTTCATCGA
643 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGG
* * * *
1194822 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGAGTTGC
708 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
1194880 AGCAGCACAT
Statistics
Matches: 4621, Mismatches: 545, Indels: 170
0.87 0.10 0.03
Matches are distributed among these distances:
866 76 0.02
867 29 0.01
868 13 0.00
869 273 0.06
870 196 0.04
872 1 0.00
875 1 0.00
878 19 0.00
879 37 0.01
881 2 0.00
882 5 0.00
883 2 0.00
887 1 0.00
891 3 0.00
892 46 0.01
893 276 0.06
894 305 0.07
895 167 0.04
896 8 0.00
897 253 0.05
898 207 0.04
899 329 0.07
900 134 0.03
901 641 0.14
902 12 0.00
903 408 0.09
904 255 0.06
905 125 0.03
906 676 0.15
907 121 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGGAGA
ACCTGACCGAGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCGGATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTAAAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTCCCGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGCA
ACACGCAGAGAGGGACCCAGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:1193269 original size:26 final size:26
Alignment explanation
Indices: 1193221--1193273 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1193211 GTTGATTTAG
*
1193221 GCATACGAAGTTCGGTCCTAGTCTAA
1 GCATACGAAGTTCAGTCCTAGTCTAA
*
1193247 GCATACGAAGTTCA-TTCTCAGTCTAA
1 GCATACGAAGTTCAGTCCT-AGTCTAA
1193273 G
1 G
1193274 ATCGAACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 21 0.88
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCAGTCCTAGTCTAA
Found at i:1195744 original size:26 final size:26
Alignment explanation
Indices: 1195707--1195759 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1195697 GTTGACTTAG
1195707 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1195733 GCATAC-AGAGTTCATTCCCAGTCTAA
1 GCATACGA-AGTTCATTCCCAGTCTAA
1195759 G
1 G
1195760 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1196592 original size:902 final size:898
Alignment explanation
Indices: 1194831--1197065 Score: 3195
Period size: 902 Copynumber: 2.5 Consensus size: 898
1194821 ATTGGCTTAG
*
1194831 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGAGTTGC-AGCAGCACATGCTGG
1 GCATACG-AGTTCATTCCCAGTCTAAGATCGGACCAGAC-GAGGGTTGCGA-CAGCACATGCTGG
* * *
1194895 GCTCGGGCATGTGCTGGTACCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
63 G-TTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
*
1194960 AACGTGACCGAC-GACATTAGGG-TTCCGACGATCGGGGGGGCCGGGGGGCGTGTGCGCACATGA
127 AACCTGACCGACAG-CATT-GGGTTTCCGACGATCGGGGGGGCC-GGGGG-GTGTGCGCACATGA
* ** *
1195023 TGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCCGATCAAACCTTGAGAAC
188 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCATATCAAACCTCGAGAAC
* ** * *
1195087 TCAC-CCCCCTTAAAGAGTATTTGAGATTTTACACATTTGCTGCCAGTAGACATTAAAGTGTCTC
253 TCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
* *
1195151 AAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTGC
318 AAATGGGGACTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT--
* * *
1195215 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCAAAAATCCTTCCAA
381 TTTTTTGCATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCAAAAATCCTTCCAA
* * * *
1195280 AAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAGTCG
446 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCA
* * *
1195345 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTAAATGAATTTACAAGCCATAAAAAT
511 TCTTGCCATGAAACTTCACATGAAGGCTTAAGAGACCATTAAACGAATTTACAAGCCATAAAAAT
*
1195410 GGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACT
576 GGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGACT
* *
1195475 TGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCTGCCCGCTTATTTCTTCGGT
641 TGCGCATCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCCGCCCGATTATTTCTTCGGT
* * * * * *
1195540 TGGCTTAGGCATACAATGTTCATTTCGAGTCTAAGATCGGATCAGACTGAGTGTTGCGGTAGCAG
706 TGGCTTAGGCATACAATGTTCATTCCGAGTCTAAGATCAGACCAGACCGAGTGTTGCAGCAGCAG
* * *
1195605 GATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCCTACACATCCCACCCCGATGGCCGG
771 GATCGGCAGCACGCAAAGAGGGACCCGGTCGATCCCCGGCCTACACATCCCACCCCGATGGCCAG
* * * *
1195670 TTGAATGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
836 CTGAATGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGAAGTTCATTCCCAGTCTAA
* *
1195733 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCAGAGCGAGGGTTGCGACAGCACATGCTAGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCGACAGCACATGCTGGG
* * * *
1195798 TTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGAAGCATTGCCGGAGAA
64 TTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
*
1195863 CCTGACCGACAGCATTGGGTTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
129 CCTGACCGACAGCATTGGGTTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
1195928 ATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCATATCAAATCTCAAGAACTCACAC
194 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCATATCAAACCTCGAGAACTCACAC
* * *
1195993 CCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATGG
259 CCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
1196058 GGACTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTTTG
324 GGACTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTTG
*
1196123 CATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGAGGCAAAAATCCTTTCAAAAAAAT
388 CATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGG-GGCAAAAATCCTTCCAAAAAAAT
1196188 TTTAAAAAATCCCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
452 TTTAAAAAATCCCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCATCTTGC
** *
1196253 CATGAAACTTCACATGAAGGCTTAAGAGACCATTGTACGAATTTACAAGCCATAAAAATGGCTTT
517 CATGAAACTTCACATGAAGGCTTAAGAGACCATTAAACGAATTTACAAGCCATAAAAATGGCATT
* * * * * *
1196318 GGCATGTATAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTGTGCA
582 GGCATGCAGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGACTTGCGCA
** * * *
1196383 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCGCCTGCCCGCCC-ATTCGTTT-TGTCGGTTGGC
647 TCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCCGCCCGATT-ATTTCT-TCGGTTGGC
* * * * *
1196446 TTAGGCATACGGA-GTTCATTCCTTA-TCTAAGATCAGACCGGACCGAG-GTTTGTAGCAGCGGG
710 TTAGGCATAC-AATGTTCATTCC-GAGTCTAAGATCAGACCAGACCGAGTG-TTGCAGCAGCAGG
* * * * * * *
1196508 ATCGGTAGCACGCAAAGAGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTATGGCCAGC
772 ATCGGCAGCACGCAAAGAGGGACCCGGTCGATCCCCGGCCTACACATCCCACCCCGATGGCCAGC
*
1196573 T-AAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAA
837 TGAA-TGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGAAGTTCATTCCCAGTCTAA
* * ** **
1196635 GCATACGGAGTTCACTCCCAGTCTAAGATCAGATTAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGACCAGA-CGAGGGTTGCGACAGCACATGCTGGG
* *
1196700 CTGGGCATGTGCTAGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCGTCGGAGA
64 TTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAGA
* * * * * *
1196764 ACTTGACCGGCAGTATT-GGTGTTCCGACGATTGGGGGGGTCGAGGGGTGTGCGCACATGATGTG
128 ACCTGACCGACAGCATTGGGT-TTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
1196828 CGATGGGTGCTGGTACATGGCCCTTGTATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCAC
192 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCATATCAAACCTCGAGAACTCAC
* * *
1196893 ACCGCCTTAAAGAGAATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTAAAAT
257 ACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
*
1196958 GGGGACAT-TTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
322 GGGGAC-TCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
1197022 GTGCATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGG
386 -TGCATGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGG
1197066 CCGGAATAGT
Statistics
Matches: 1196, Mismatches: 117, Indels: 40
0.88 0.09 0.03
Matches are distributed among these distances:
899 48 0.04
900 35 0.03
901 262 0.22
902 844 0.71
903 7 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCGGACCAGACGAGGGTTGCGACAGCACATGCTGGGTT
GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
TGACCGACAGCATTGGGTTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCATATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
ACTCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCAT
GCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCAAAAATCCTTCCAAAAAAATTTTA
AAAAATCCCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATG
AAACTTCACATGAAGGCTTAAGAGACCATTAAACGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATAAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGACTTGCGCATCCC
GTCTCTCTGGCCAACGTAGTGCCCGCCCGCCCGCCCGCCCGATTATTTCTTCGGTTGGCTTAGGC
ATACAATGTTCATTCCGAGTCTAAGATCAGACCAGACCGAGTGTTGCAGCAGCAGGATCGGCAGC
ACGCAAAGAGGGACCCGGTCGATCCCCGGCCTACACATCCCACCCCGATGGCCAGCTGAATGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGAATACGAAGTTCATTCCCAGTCTAA
Found at i:1196647 original size:26 final size:26
Alignment explanation
Indices: 1196611--1196661 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1196601 TGACTTAGGA
*
1196611 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCACTCCCAGTCTAAGC
1196637 ATACGGAGTTCACTCCCAGTCTAAG
1 ATACGGAGTTCACTCCCAGTCTAAG
1196662 ATCAGATTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
ATACGGAGTTCACTCCCAGTCTAAGC
Found at i:1198920 original size:26 final size:26
Alignment explanation
Indices: 1198884--1198935 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1198874 GTTGACTTAG
1198884 GCATACAGAGTTCATTC-CTAGTCTAA
1 GCATACAGAGTTCATTCTC-AGTCTAA
*
1198910 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCTCAGTCTAA
1198936 AATTGGACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (26 bp):
GCATACAGAGTTCATTCTCAGTCTAA
Found at i:1199824 original size:26 final size:26
Alignment explanation
Indices: 1199787--1199839 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1199777 GTTGACATAG
1199787 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1199813 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1199839 G
1 G
1199840 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1200631 original size:890 final size:892
Alignment explanation
Indices: 1198430--1200756 Score: 3175
Period size: 905 Copynumber: 2.6 Consensus size: 892
1198420 TGTGTCTAAA
* * * * * **
1198430 AAGTTTGGGGCCAAAACTTCTTCCGAAAATATTTT-AAAAAT-CTCGAACCGCAGAAAGTTTTGA
1 AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCT-GAACCGAAAAAAGTTTCAA
1198493 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTCAA-GGACC
65 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACC
1198557 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAAC
129 ATTGTATGAATTTACAAGCC--AAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAAC
* * * *
1198622 CCACCTACCACCCTATCGATCCACGACTTGCGCATCCAGTCTCTCTGGTCGGCGTAGAGCCCACC
192 CCACCTACCA-CCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCC
* * ** *
1198687 CGCCCGCCAGCCCGTTCGTTTCGTAGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGAT
256 CGCCCGCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
* * * * * *
1198752 CGGACCGGATTGAA-GGTTGCAGCAGCAAGATCGACAGCATGCAGAGGGGGACCTGGTCGATCCC
321 CGAACCGGA-TCAAGGGTTGCAGCAGCAGGATCGATAGCATGCAGAAGGGGACCCGGT-GATCCC
** * * * *
1198816 CAACTTGCGCATCTCGCCCCTCTGGTCGGCTGAGGGCCCGCACACGCTCGTTTTGTGTGTTGACT
384 CGGCTTGCGCATC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACA-GCTCGTTTCGTGGGTTGACT
* * * *
1198881 TAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAAATTGGACCG
447 TAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
* * * * * * **
1198946 GACCGAGGGTTGCAGCAGCCCATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTTGGTG
512 GACCGAGGGTTGCGGCAGCACATGCTAGGCTAGGGCATGTGCTGGTGCCACATTTTTCTTCGCCG
* * **
1199011 GGGCACCATCGCCGGAGCATCACCGGAGAACCTGACTGACGGCATTGAGGTTTTAGCGATCGGGG
577 GGGCACCAT--CC-G-G-AT--CCGGAGAACCTGACCGACAGCATTGAGGTTCGAGCGATCGGGG
* * *
1199076 GGGCCGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
635 GGGCCGGGGGGCGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTAGCCCCTATATTGGCCCCC
*
1199141 TATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGC
700 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGC
1199206 TGCCAGTAGACATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTAC
765 TGCCAGTAGACATTAAAGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
1199271 ACTTCGAGTTTTTAGATGAATTTTTTCGTGCATGCCAAGAAAAATACAAGGATCACATCTACC
830 ACTTCGAGTTTTTAGATGAATTTTTTCATGCATGCCAACAAAAATACAAGGATCACACCTACC
*
1199334 AAGTTTGGGGCCAAAACTCCTT-TCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAA
1 AAGTTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCTGAACCGAAAAAAGTTTCAA
* * *
1199398 AAATCATGAAAAATAGAAAACGAGTCGTTTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCA
65 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
1199463 TTGTATGAATTTATAAGCCATAAAAATGCCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
130 TTGTATGAATTTACAAGCC--AAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACC
* *
1199528 CACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGTCGACGTAGTGCCCG-CC
193 CACCTACCACC-TATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCC
* * * * *
1199592 GCCCGCCCTGCCTGCTCGTTTCATCAGTTGGCTTAGGTATACAGAGTTCATTCCCAGTCTAAGAT
257 GCCCG-CCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
* ** * *
1199657 C-AGACCGGATCGAGGGTTGTGGCAGCAGGATCGATAGCACGCA-AAGGGGGACCCGATTGATCC
321 CGA-ACCGGATCAAGGGTTGCAGCAGCAGGATCGATAGCATGCAGAA-GGGGACCCG-GTGATCC
* * * *
1199720 CCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGTA-AGCTCATTTCGTGGGTTGACA
383 CCGGCTTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACAGCTCGTTTCGTGGGTTGACT
1199784 TAGGCATAC-GAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
447 TAGGCATACAG-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * *
1199848 GGACCGAGGGATGCGGTAGCACATGCTAGGCTAGGGCATGTGTTGGTGCCACATTTTTCTTCGCC
511 GGACCGAGGGTTGCGGCAGCACATGCTAGGCTAGGGCATGTGCTGGTGCCACATTTTTCTTCGCC
* *
1199913 GGGGCACCAT-C-G-T-CGGAGAACTTGACCGACAGCATTGGGGTTCCGA-CGATCGGGGGGGCC
576 GGGGCACCATCCGGATCCGGAGAACCTGACCGACAGCATTGAGGTT-CGAGCGATCGGGGGGGCC
*
1199973 GGGGGGGGCGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAGCCCCTATATTGGCCCCCTAT
640 --GGGGGGCGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTAGCCCCTATATTGGCCCCCTAT
* *
1200038 CCCTCATCAAACCTCTAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
703 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGC
* *
1200102 CAG-AGCCATTAAAGTGT-TCGAAATGGGGACATTTTTTTCAAATGG-CGACAAAATCTTGTACA
768 CAGTAGACATTAAAGTGTCT-AAAATGGGGACATTTTTTTCAAATGGTC-ACAAAATCTTGTACA
* * * **
1200164 CTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAGTACAAGGATCATGCCTACC
831 CTTCGAGTTTTTAGATGAATTTTTTCATGCATGCCAACAAAAATACAAGGATCACACCTACC
* *
1200226 AAATTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCCTGAACCGAAAAAAGTTTCAA
1 -AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGAAAAAAGTTTCAA
*
1200291 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCG
65 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
1200356 TTGTATGAATTTACAAGCC-AAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA
130 TTGTATGAATTTACAAGCCAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCA
* * *
1200420 CTTACCACACTATTGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
195 CCTACCAC-CTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGC
* * *
1200485 CCGTCAACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGA
259 CCGCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGA
* * * * * *
1200550 ACCAGACCAAGGGTTGCAGTAGCAGGACCGGTAGCATGCAGAAGGCGACCCGGCTGATCCCCGGC
324 ACCGGATCAAGGGTTGCAGCAGCAGGATCGATAGCATGCAGAAGGGGACCCGG-TGATCCCCGGC
* * *
1200615 TTGCGCATGCCGCCCCTCTGGCCGGCTGAGCGCCCACACA-CTCGTTTCATAGGTTGACTTAGGC
388 TTGCGCAT-CCGCCCCTCTGGCCGGCTGAGCGCCCGCACAGCTCGTTTCGTGGGTTGACTTAGGC
* * * *
1200679 ATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATCAGACCAGATCG
452 ATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
1200744 AGGGTTGCGGCAG
517 AGGGTTGCGGCAG
1200757 TGCATTCGAG
Statistics
Matches: 1260, Mismatches: 137, Indels: 66
0.86 0.09 0.05
Matches are distributed among these distances:
890 321 0.25
891 15 0.01
892 146 0.12
893 179 0.14
894 84 0.07
895 1 0.00
897 1 0.00
900 1 0.00
902 1 0.00
903 138 0.11
904 46 0.04
905 323 0.26
906 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGAAAAAAGTTTCAAA
AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCC
GCCAGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAAC
CGGATCAAGGGTTGCAGCAGCAGGATCGATAGCATGCAGAAGGGGACCCGGTGATCCCCGGCTTG
CGCATCCGCCCCTCTGGCCGGCTGAGCGCCCGCACAGCTCGTTTCGTGGGTTGACTTAGGCATAC
AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGG
TTGCGGCAGCACATGCTAGGCTAGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCAT
CCGGATCCGGAGAACCTGACCGACAGCATTGAGGTTCGAGCGATCGGGGGGGCCGGGGGGCGTGC
GCAAATGATGTGCGATGGGTGCTGGTACTTAGCCCCTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGACATTAA
AGTGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGA
TGAATTTTTTCATGCATGCCAACAAAAATACAAGGATCACACCTACC
Found at i:1200707 original size:26 final size:26
Alignment explanation
Indices: 1200677--1200729 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1200667 GTTGACTTAG
1200677 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
1200703 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1200729 G
1 G
1200730 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1202760 original size:26 final size:26
Alignment explanation
Indices: 1202724--1202776 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1202714 GTTGACTTTG
1202724 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1202750 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1202776 G
1 G
1202777 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1203386 original size:893 final size:893
Alignment explanation
Indices: 1201647--1203402 Score: 2660
Period size: 893 Copynumber: 2.0 Consensus size: 893
1201637 CGCTCGCCGC
* * *
1201647 CCGTTCATTTCGTCGGTTGGCTTAGGCATACCGAGTTCTTTCCCAGTCTAAGATCAGATTGGACC
1 CCGTTCATTTCATCGGTTGGCTTAGGCATACCGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
* * * ** *
1201712 GACGGTTACGATAGCAAGATTGACAGCACACAGAGAGGGACCTGGCCGATCCTTGGCTTGTGCAT
66 GACGGTTACGATAGCAAGATCGACAGCACACAGAGAGGGACCCGGCCGACCCCCGACTTGTGCAT
* * * * *
1201777 CCCGTCCCTCTGGCCGACTGAACGCTCGAACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGT
131 CCAGCCCCTCTGGCCGACTGAACGCTCGAACACTCATTTCGTGGGTTGACTTAGGCATACGGAGT
* *
1201842 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAAACTAGGATCGGACCAGACCGAGGGTTGCA
196 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAAACTAAGATCAGACCAGACCGAGGGTTGCA
* *
1201907 GTAGCACATGTTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATAGTCG
261 GTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTACGTCGGGGCACCATAGTCG
*
1201972 GAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCTAACGATCGAGGGGCCGGGGGGTGTG
326 GAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGAGGGGCCGGGGGGTGTG
* *
1202037 CGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGTCCCTATCCCTCATCAAACC
391 CGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACC
* *
1202102 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
456 TCGAGAACTCACACCCCCATAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
1202167 AGTGTCTGAAATAGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGC
521 AGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGC
* * *
1202232 TGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAAC
586 TGAATTTTTTTATGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA
** * **
1202297 TCCTTCCGTAAATAGTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAA
651 TCCTTCCAAAAAAAGTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* *
1202362 AACGAGACATCTTGACACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
716 AACGAGACATCTTGACACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTCACAAGC
* *
1202427 AATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGACCAAACCCACCTACCACCCTATCGA
781 AATAAAAATGGCATTGGCACACAGAAATATGAACATGTGACCAAACCCACCTACCACCCTATCGA
*
1202492 TCCATGACTTGCGCATCCTGTCTCTCTGGCTGGCTATTGCCCGCCCGT
846 TCCACGACTTGCGCATCCTGTCTCTCTGGCTGGCTATTGCCCGCCCGT
* * * *
1202540 CCGTTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACT
1 CCGTTCATTTCATCGGTTGGCTTAGGCATACCGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
* * * ** * **
1202605 GAGGGTTACGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGGGTGACCCCCGACTTGTGCAT
66 GACGGTTACGATAGCAAGATCGACAGCACACAGAGAGGGACCCGGCCGACCCCCGACTTGTGCAT
* * * *
1202670 CCAGCCCCTCTGGCCGATTGAGCG-TCTGTACACTCATTTCGTGGGTTGACTTTGGCATACGGAG
131 CCAGCCCCTCTGGCCGACTGAACGCTC-GAACACTCATTTCGTGGGTTGACTTAGGCATACGGAG
** **
1202734 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGC
195 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAAACTAAGATCAGACCAGACCGAGGGTTGC
* * * *
1202799 GGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTACGTCGGGGCTCCATCGTC
260 AGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTACGTCGGGGCACCATAGTC
** * *
1202864 GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTG
325 GGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATC-GAGGGGCCGGGGGGTG
* *
1202929 TGCGCATATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
389 TGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAA
* * *
1202994 ACCTCGAGAACTCACACCCCCATAAAGTGCAATTGAGA-TTTATAGGTTTGCTGCCAGTTGCCAT
453 ACCTCGAGAACTCACACCCCCATAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
1203058 TAAAGTGTCTGAAAT-GCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-TGATTTT
518 TAAAGTGTCTGAAATAG-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCT-AGTTT
1203121 TTAGCTGAATTTTTTTATGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
581 TTAGCTGAATTTTTTTATGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* *
1203185 AAAAATCCTTTCAAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
646 AAAAATCCTTCCAAAAAAAGTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* * *** * *
1203250 TAGAGAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTCA
711 TAGAAAACGAGACATCTTGACACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTCA
* * *
1203315 CAAGCCATAAAAATGGCATTGGCACATAGAAATATGAACATGTG-CCTAAGCCCACCTACCACCC
776 CAAGCAATAAAAATGGCATTGGCACACAGAAATATGAACATGTGACC-AAACCCACCTACCACCC
*
1203379 TATCGATCCACGGCTTGCGCATCC
840 TATCGATCCACGACTTGCGCATCC
1203403 CGCCTCTTTG
Statistics
Matches: 773, Mismatches: 84, Indels: 12
0.89 0.10 0.01
Matches are distributed among these distances:
892 4 0.01
893 554 0.72
894 164 0.21
895 51 0.07
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
CCGTTCATTTCATCGGTTGGCTTAGGCATACCGAGTTCATTCCCAGTCTAAGATCAGATCGGACC
GACGGTTACGATAGCAAGATCGACAGCACACAGAGAGGGACCCGGCCGACCCCCGACTTGTGCAT
CCAGCCCCTCTGGCCGACTGAACGCTCGAACACTCATTTCGTGGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAAACTAAGATCAGACCAGACCGAGGGTTGCA
GTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTACGTCGGGGCACCATAGTCG
GAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGAGGGGCCGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCATAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGC
TGAATTTTTTTATGCATGCCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAA
TCCTTCCAAAAAAAGTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
AACGAGACATCTTGACACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTCACAAGC
AATAAAAATGGCATTGGCACACAGAAATATGAACATGTGACCAAACCCACCTACCACCCTATCGA
TCCACGACTTGCGCATCCTGTCTCTCTGGCTGGCTATTGCCCGCCCGT
Found at i:1203870 original size:26 final size:26
Alignment explanation
Indices: 1203834--1203886 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1203824 GTTGACTTAG
1203834 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1203860 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1203886 G
1 G
1203887 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1204758 original size:26 final size:26
Alignment explanation
Indices: 1204728--1204780 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1204718 GTTGACTTAG
*
1204728 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1204754 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1204780 G
1 G
1204781 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1205180 original size:893 final size:892
Alignment explanation
Indices: 1203459--1210104 Score: 7795
Period size: 878 Copynumber: 7.5 Consensus size: 892
1203449 CCAAAAATCC
* * * *
1203459 TTTCGAAAATCATGAAAAATAGAAAACGGGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAA
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
1203524 GGACCATTGTACGAATTCACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * * ** * * * *
1203589 TAAACCCATCTACCAACCTATCGATCCACGACTTGCGCATCCCACCTCTCTGGTCGACGCAGAGC
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * * * * * *
1203654 CCGCTCGCCCGTTCGTGTCGTCAGTTGGTTTAGGTATACGGAGTTCATTCCCAGTCTAAGATC-G
196 CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
*
1203718 AATCGGACCGAGGGTTGC-G-A-C---A---GCA-CA--CAGAAGGGGACCCGATCGATCCCCGG
261 -ATCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGG
* * * * * * *
1203771 CTTACGGATCCCGCCCCTTTGGCCAGCTGAACGCCCGCAGGCTCGTTTCGTGGGTTGACTTAGGC
325 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* *
1203836 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCG
390 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CG
* * * **
1203901 AGGGTTGCGGCAGCACATGCTGGGCTC-AGGCATGTGTTGGTGCCCCGTTTTTCTTCCCCGGGGC
454 AGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGC
* * * * * *
1203965 ACCACCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCAATCGGAGGGGC
517 ACCA-TGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC
* * *
1204030 CGGGGGGTGTGCGCACATGATCTCCGATGGGTGCTGGTACTTGGCCCTTATATT-GACACCCTAT
581 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCA-CCTAT
1204094 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
645 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
1204159 TAGTAGCCATTAAAGTGTCTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
710 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
*
1204224 TCT-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
775 T-TGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *** *
1204288 TTGGGGCCAGAACTCCTTCCAAAAAAAGTTTAAAAAATTTGGATCCGTAAAACA-
839 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAA-AG
** * * *
1204342 TTTTGAAAATCATGAAAAATAGAAAAAGAGACATCTTGCCATGAAACTTCACGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
1204407 GGAGCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * *
1204472 CAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCTGGC-TAGTGC
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
*
1204536 CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
196 CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * *
1204601 ATCGGACCGAGGGTTACAGTAGCAGGATCGGTAGCACGTAGAGGGGGACCCGGGT-AACCCCCGG
261 ATCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GATCGATCCCCGG
* * ** * *
1204665 CTTACGCATCCCACCCCTCTGGCCGGCTGAGCGTTCGCACACTCATTTCATGGGTTGACTTAGGC
325 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* **
1204730 ATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGATCG
390 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CG
* * * * *
1204795 AGGGTTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTCTTCTACGTCGAGGCT
454 AGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCG-GGCA
* *
1204860 CCATGTCGGAGCATCGTCGGAGAACCTGACCGACGGTATTGGGGTTCCGATGATCGGGGGGGCCG
518 CCATGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG
* * *
1204925 GGGGGTGTGCGCACATGATGTGCAATGGGTGCTCGTACTTGGCCCTTATATTGGCCACCTATCTC
583 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCC
* * *
1204990 TCATCAAACCTCGAGAACTCACACCCCCATAAAGAACAATTGAGATTTTACAGGTTTGCTGCCAG
648 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
1205055 TAGCCATTAAAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
713 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
* *
1205120 ATTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
778 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
** * *
1205185 GGCCAAAAAGCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
843 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * *
1205235 TTTCAAAAATCATGAAAAATAGAGAATGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * ** *
1205300 GGACCATTGTACGAATTCACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAACATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * * * *
1205365 TAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTTTGGCCGACGTAGAGC
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
*
1205430 CCGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGA
196 CCGCCCG----CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *
1205495 TTAGACCGGACTGAGGGTTGC-G--GC---A---GCA-CA--TAGAGGGGGACCCCG-TCGATCC
257 TCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGA-CCCGATCGATCC
* * * * * * * *
1205547 CCAGCTTGCGCATCCCGCCCTTTTGGCCAGCTGAGCTCCCGCAGGCTCGTTTCGTAGGTTGACTT
321 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
* * *
1205612 AGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGG
386 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * * *
1205677 ACTGAGGGTTGTGGCAGCACATGCCGGGCTTGGGCATGTGCTGGTGCCTCATTTTTCTTCGTCGT
451 AC-GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCG-
* * * * * * *
1205742 GGCACCACCGTCGGTGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTTCGACAATCGGGAG
514 GGCACCA-TGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG
* * *
1205807 GGTCGGGTGGTGTGCGCACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CACCC
578 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCA-CC
* * *
1205871 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTATAGGTTTGC
642 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * * *
1205936 AGACAGTAGCCATTGAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
707 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* *
1206001 A-TTTCAAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
772 ACTTT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * *
1206065 ACTTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAAG
836 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
*
1206122 TTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* **
1206187 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACTTAAATATGAAGATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * * *
1206252 CAAACCCACCTACAACCTTATAGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAG-GTAGTG
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-GCGTAGTG
* * * *
1206316 CCCGCTCGCCCGCTCGCCCACTCATTCCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTC
195 CCCGCCCGCCCGCTCG-----T--TT-CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
1206381 TAAGATCAGATAGGATCGAGGGTTACGGTAGCAGGATCGGCAGCACGCAGAGGGGGACTCGATCG
252 TAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCG
* * ** *
1206446 ATCCCCAGCTTGCGCAT-CCGCCCTTCTGGTTGGCTGAGCGCCCGCACGCTCGTTTCATGGCTTG
317 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * * *
1206510 ACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGTAGTTCATTCCCAGTCTAAGATCAAA
382 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * *
1206575 CCGGACGAGGGTTGCGGCAGCATATGCTGGGCCCGGGCATGTGCTGGTGCCACATTTTTCTTCGC
447 CCGGACGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * *
1206640 CAGGGCACCA--T-----CA-C--C---G-A----A-CGA---CATTGGGGTTTCGATGATCAGG
512 C-GGGCACCATGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
* *
1206683 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGGCCCC
576 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCAC
* * *
1206748 CTATCCCTCTTCAAACCTCAAGAACTCACACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTG
641 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * *
1206813 CTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTGGCA
706 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
*
1206878 CAC-TTGCAGTTTTTAGCTGAATTTTTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCT
771 CACTTTG-AGTTTTTAGCTGAA---TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* *
1206942 ACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAATATTTTTGAAAAAAATCCCGAACTGCAAAAAG
832 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-A-TTTT--AAAAAATCCCGAACCGTAAAAAG
* *
1207006 TTTCAAAAATCGTGAAAAATAGAAAACGTGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *** * * * **
1207071 GAAATGTTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGACATGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * * *
1207136 TAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTGGCTGACGTAGTGC
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-
* * * *
1207201 CCGGTCGCGTGCCCACCCGTTCATTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCT
195 -C---C-C--GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
** * ** * * * *
1207266 AAGATCAGATCGGAATGAGGGTTACGACAGCAGGATCGGTAGCATGCAGAGGGAGACCCGGTCGA
253 AAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGA
* * * * * *
1207331 TCCTCGGCTTGCGTATCCTGCCCCTCT-GTC-GCTGAGCGCCCGCACGCTCATTTCATGGCTTGA
318 TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGA
*
1207394 CTTAGTCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----C---C---G--C--A-
383 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
*
1207437 C---CGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG-C
448 CGGACGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* *
1207498 -TG---C-TG-C--A-C--CATC-----ACC-GTA-CGA---CATTGGGGTTCC-AGCGATCGGG
513 GGGCACCATGTCGGAGCATCGTCGGAGAACCTG-ACCGACGGCATTGGGGTTCCGA-CGATCGGG
* * * * *
1207541 GAGGTC-GGGGGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCACTTATATTGGCCTC
576 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCAC
* *
1207605 CTATCCCTTATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
641 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * *
1207670 CTGCCAGTAGCGACTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATAGTCACAAAATCTTGTA
706 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * * *
1207735 CACTTCGAGTTTTTAGCTGAAATTTTTTATGCATGCCAATAAAAATAGAAGGTTCACGTCTACCA
771 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
*** * ** * * *
1207800 AGTTTGTAACCAAAACTCCTTCTGAACTAATTTTTAAAAATCCCGAACAGCAAAAAG
836 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * * *
1207857 TTTCAAAAATTATGAAAAACAAAAAACGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
1207922 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * *
1207987 TAAACCCACTTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGC
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-
** * * * *
1208052 CCACCCGCCCGCCCGCTCGTTTGGTCGGTTGGCTTTGCCGTACGGACTTCATTCCCAGTCTAAGA
195 ---CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * * ** * *
1208117 TCGGACCAGACCCAGGGTTGTGGCAGTAGGATCGGCAGCATACCGAGGGGGACCCAATCGATCCC
257 TCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC
* * * *
1208182 TGGCTTGTGCAACCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATTGGTTGACTTA
322 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
* * * *
1208247 GGCATACGGAGTTCAATCCCAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAAGATCAAACCAGA
387 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * *
1208312 CCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCGTGAGCTGGTGCTGCTTTTTTCTTCGTCAGG
452 -CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GG
** ** * **
1208377 GCACTGTCGTCGGAGCATCACCGGAGAACCTGACCGATGGCATTACGGTTCCGACGATCGGGGGG
515 GCACCAT-GTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG
** * *
1208442 GCCGGGGGGGTGTGTACACATGATGTGCGATGGGTGCTGGTACTTGGGCCTTATATT-TCC-CTC
579 GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCAC-C
*
1208505 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAG-------A-------
642 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
1208556 T-----T-----TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAT
707 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
1208611 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAGGGATCACATCTACCAA
772 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * ** * *
1208676 GATTGGGGCCAAAAATCCTTTTGAAAAAATTTGAAAAAATCCTGAACCGTAAAAAG
837 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * * *
1208732 TTTCGAAAATCATGAAAAATAGAAAACGAGTTGTCTTTCCATGAAACTTCACGTGAAGCCTTAAG
1 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
1208797 GGACCATTGTCTGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAACATGTGCC
66 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* ** *
1208862 TAAACCCACCTACCACCC-ATTGATCCACGGCTTGCATATCCCATCTCTCTGGCCGGCGTAGTGC
131 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA--G-
* * * *
1208926 TCGCCCACCCGCCCACCCG-TTCATTTCGTCAGTTGGCTTAGGCATACGGAGTTAATTCCCAGTC
193 T-GCCCGCCCGCCCGCTCGTTTCA--TCG---GTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
1208990 TAAGATCAGA-CTGGACTGAGGGTTGCGGTAGCAGGATTGGTAGCACACAGAGGGGGACCCAACC
252 TAAGATCAGATC-GGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATC
* * * * * *
1209054 GATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTATGCTCATTTCGTGGGTT
316 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * *
1209119 GACTTAGTCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCAG
381 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * *
1209184 ATCGGAACGAGCGTTACGGTAGCACATGTTGGGCTCG-GACATGTACTGGTGCCGCATTTTTCTT
446 ACCGG-ACGAGGGTTGCGGCAGCACATGCTGGGCTCGAG-CATGTGCTGGTGCCGCATTTTTCTT
* *
1209248 CGTCGGGGCACCATCG-CTGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGA
509 CGTC-GGGCACCAT-GTC-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* * *
1209312 TCGTGGGGGTCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
571 TCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
1209377 GCCGCCTAACCCGCATCAAACCTCGAGAACTCACACCCCCTTAAAAGAGCATTTGAGATTTTACA
636 GCCACCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACA
*
1209442 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATATTTTTTCAAATGGTCACAAAA
700 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-CTTTTTTCAAATGGTCACAAAA
* * * * *
1209507 TCGTGTACACGTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATACAAGAATCACG
764 TCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * *
1209572 TATACCAAGTTTGGAGCCAAAACTCTTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
829 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
*
1209636 TTTC-AAAATCATGAAAAATA-AGAAACGAGTGGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
1 TTTCAAAAATCATGAAAAATAGA-AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
1209699 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGC
65 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* * * *
1209764 CTAAACCCACCTACCAGCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCAGGTGTAGTG
130 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT-
* * *
1209829 CCCGCCCGCCCGCCCACTCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATC
194 ---GCCCGCCCG--C-C-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* ** * * * * * * * * *
1209894 TAAAATTGGACCGAATCGAGGGCTGTGGCAGCAAGATCAGCAGCACGCAGAGAGGGACCCGATCG
252 TAAGATCAGATCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCG
* * * *
1209959 ATCCCCGTCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTA
317 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
*
1210024 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATC-GA
382 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-
*
1210088 ACTGGACTGAGGGTTGC
446 ACCGGAC-GAGGGTTGC
1210105 TGTAGCAGGA
Statistics
Matches: 4932, Mismatches: 633, Indels: 375
0.83 0.11 0.06
Matches are distributed among these distances:
847 115 0.02
848 2 0.00
849 61 0.01
850 3 0.00
851 196 0.04
852 1 0.00
853 9 0.00
854 60 0.01
855 6 0.00
856 1 0.00
857 191 0.04
858 81 0.02
860 1 0.00
861 1 0.00
862 1 0.00
863 1 0.00
864 1 0.00
866 2 0.00
868 1 0.00
869 1 0.00
870 1 0.00
871 1 0.00
872 1 0.00
873 2 0.00
874 49 0.01
875 339 0.07
876 3 0.00
877 53 0.01
878 552 0.11
879 19 0.00
880 8 0.00
881 64 0.01
882 83 0.02
883 243 0.05
884 299 0.06
885 14 0.00
886 192 0.04
887 515 0.10
888 4 0.00
889 6 0.00
890 4 0.00
891 56 0.01
892 17 0.00
893 503 0.10
894 206 0.04
895 9 0.00
897 2 0.00
898 94 0.02
899 53 0.01
900 50 0.01
901 63 0.01
902 108 0.02
903 188 0.04
904 383 0.08
905 1 0.00
906 1 0.00
907 4 0.00
908 4 0.00
909 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC
CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ATCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGC
TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACGAG
GGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCA
TGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG
GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
Found at i:1205650 original size:26 final size:26
Alignment explanation
Indices: 1205614--1205666 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1205604 GTTGACTTAG
1205614 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
1205640 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1205666 G
1 G
1205667 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1206546 original size:26 final size:26
Alignment explanation
Indices: 1206516--1206568 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1206506 CTTGACTTAG
1206516 GCATACAG-AGTTCATTCCCAGTCTAA
1 GCATA-AGTAGTTCATTCCCAGTCTAA
*
1206542 GCATATGTAGTTCATTCCCAGTCTAA
1 GCATAAGTAGTTCATTCCCAGTCTAA
1206568 G
1 G
1206569 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATAAGTAGTTCATTCCCAGTCTAA
Found at i:1208277 original size:26 final size:26
Alignment explanation
Indices: 1208248--1208300 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1208238 GTTGACTTAG
1208248 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
* *
1208274 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
1208300 G
1 G
1208301 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:1209163 original size:26 final size:26
Alignment explanation
Indices: 1209127--1209178 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1209117 TTGACTTAGT
1209127 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
* *
1209153 CATACGGAGTTCATTCTCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
1209179 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:1209995 original size:904 final size:895
Alignment explanation
Indices: 1207510--1210085 Score: 3371
Period size: 904 Copynumber: 2.9 Consensus size: 895
1207500 CTGCACCATC
* * *
1207510 ACCGTACGACATTGGGGTTCCAGCGATCGGGGAGGTCGGGGGTGTGCGCACATGATGTGCGATAG
1 ACCG-ACGGCATTGGGGTTCGA-CGATCGGGG-GGTCGGGGGTGTGCGCACATGATGTGCGATGG
* *
1207575 GTGCTGGTACTTGGCACTTATATTGGCCTCCTATCCCTTATCAAACCTTGAGAACTCACACCCCC
63 GTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
* *
1207640 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGACTAAAGTGTTTGAAATGGGGAC
127 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC-ATTAAAGTGTCTGAAATGGGGAC
* *
1207705 ACTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTATGCATG
191 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
* * * * * * ** *
1207770 CCAATAAAAATAGAAGGTTCACGTCTACCAAGTTTGTAACCAAAACTCCTTCTGAACTAATTTTT
256 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCTTTCTGAAAAAATTTTA
* * * * * *
1207835 AAAAATCCCGAACAGCAAAAAGTTTCAAAAATTATGAAAAACAAAAAACGAGTCGTCTTGCCACG
321 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAGAAACGAGTCGTCTTGCCATG
1207900 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
386 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
1207965 TGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCATGGCTTGCGCATCCC
451 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCATGGCTTGCGCATCCC
* * * * * *
1208030 GTCTCTTTGGCCGGCGTAGTGCCCACCCGCCCG--C-CCGCTCGTTTGGTCGGTTGGCTTTGCCG
515 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
1208092 TACGGACTTCATTCCCAGTCTAAGATCGGACCAGACCCAGGGTTGTGGCAGTAGGATCGGCAGCA
580 TACGGAGTTCATTCCCAGTCTAAGATCGGACC-GAACGAGGGTTGTGGCAGCAGGATCGGCAGCA
* * * * *
1208157 TACCGAGGGGGACCCAATCGATCCCTGGCTTGTGCAACCCGCCCCTCTGGCCGGCTGAGCGCCCG
644 CACAGAGGGGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * * *
1208222 CACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAGCATGCGGAGTTC
709 TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * *
1208287 ATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCGTGAGC
774 ATTCCCAGTCTAAGATCAAACCAGAACAAGCGTTACGGCAGCACATGCTGGGCTCGGACATGAGC
* * **
1208352 TGGTGCTGCTTTTTTCTTCGTCAGGGCACTGTCGTCGGAGCATCACCGGAGAACCTG
839 TGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTG
* ** * **
1208409 ACCGATGGCATTACGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGTACACATGATGTGCGATG
1 ACCGACGGCATTGGGGTT-CGACGATC-GGGGGGTC--GGGGGTGTGCGCACATGATGTGCGATG
* *
1208474 GGTGCTGGTACTTGGGCCTTATATT-TCCCTCTATCCCTCATCAAACCTTGAGAACTCACACCCC
62 GGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTTGAGAACTCACACCCC
1208538 CTTAAAGAGCATTTGAG-------A-------T-----T----TTAAAGTGTCTGAAATGGGGAC
126 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCATTAAAGTGTCTGAAATGGGGAC
* * *
1208580 ACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAG
191 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
* * * * * *
1208645 CCAACAAAAATACAGGGATCACATCTACCAAGATTGGGGCCAAAAATCCTTT-TGAAAAAATTTG
256 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACT-CTTTCTGAAAAAATTTT
* * * *
1208709 AAAAAATCCTGAACCGTAAAAAGTTTCGAAAATCATGAAAAAT-AGAAAACGAGTTGTCTTTCCA
320 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAG-AAACGAGTCGTCTTGCCA
* *
1208773 TGAAACTTCACGTGAAGCCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGCATTGG
384 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * **
1208838 CACGCAGAAATATGAACATGTGCCTAAACCCACCTACCACCCATTGATCCACGGCTTGCATATCC
449 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTATCGATCCATGGCTTGCGCATCC
* * * * * *
1208903 CATCTCTCTGGCCGGCGTAGTGCTCGCCCACCCGCCCACCCGTTCATTTCGTCAGTTGGCTTAGG
514 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCA-CCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * *
1208968 CATACGGAGTTAATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGTAGCAGGATTGGTAG
578 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAAC-GAGGGTTGTGGCAGCAGGATCGGCAG
* * *
1209033 CACACAGAGGGGGACCCAACCGATCCTCGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCC
642 CACACAGAGGGGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * *
1209098 CGTATGCTCATTTCGTGGGTTGACTTAGTCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGT
707 CGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * * * *
1209163 TCATTCTCAGTCTAAGATCAGATCGGAACGAGCGTTACGGTAGCACATGTTGGGCTCGGACATGT
772 TCATTCCCAGTCTAAGATCAAACCAGAACAAGCGTTACGGCAGCACATGCTGGGCTCGGACATG-
* **
1209228 A-CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCGTCGGAGAACCTG
836 AGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTC-GGAGCATCACCGGAGAACCTG
*
1209287 ACCGGCGGCATTGGGGTTCTGACGATCGTGGGGGTCAGGGGGTGTGCGCACATGATGTGCGATGG
1 ACCGACGGCATTGGGGTTC-GACGATCG-GGGGGTC-GGGGGTGTGCGCACATGATGTGCGATGG
* * *
1209352 GTGCTGGTACTTGGCCCTTATATTGGCCGCCTAACCCGCATCAAACCTCGAGAACTCACACCCCC
63 GTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
1209417 TTAAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
127 TT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CATTAAAGTGTCTGAAATGGGGA
* * * *
1209482 CATATTTTTTCAAATGGTCACAAAATCGTGTACACGTCGAGTTTTTAGCTGAATTTTTTTTTGCA
190 CA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCA
* * **
1209547 TGCCAACAAAAATACAAGAATCACGTATACCAAGTTTGGAGCCAAAACTCTTTCCAAAAAAATTT
254 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCTTTCTGAAAAAATTT
*
1209612 TAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCATGAAAAATAAGAAACGAGTGGTCTTGCCA
319 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAGAAACGAGTCGTCTTGCCA
1209676 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
384 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
1209741 CATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCATGGCTTGCGCATC
449 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATCGATCCATGGCTTGCGCATC
* *
1209806 CCGTCTCTCTGGCAGGTGTAGTGCCCGCCCGCCCGCCCACTCGCTCGTTTCGTCGGTTGGCTTAG
513 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCAC-CGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
1209871 GCATACAGAGTTCATTCCCAATCTAAAATTGGACCGAATCGAGGGCTGTGGCAGCAAGATCAGCA
577 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAA-CGAGGGTTGTGGCAGCAGGATCGGCA
* * * *
1209936 GCACGCAGAGAGGGACCCGATCGATCCCCGTCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
641 GCACACAGAGGGGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
1210001 CCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
706 CCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
*
1210066 TTCATTCCCAGTATAAGATC
771 TTCATTCCCAGTCTAAGATC
1210086 GAACTGGACT
Statistics
Matches: 1433, Mismatches: 195, Indels: 93
0.83 0.11 0.05
Matches are distributed among these distances:
874 51 0.04
875 275 0.19
876 4 0.00
877 54 0.04
878 346 0.24
879 16 0.01
880 1 0.00
885 1 0.00
886 1 0.00
892 1 0.00
893 1 0.00
898 20 0.01
899 62 0.04
900 47 0.03
903 158 0.11
904 394 0.27
905 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
ACCGACGGCATTGGGGTTCGACGATCGGGGGGTCGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCTTTCTGAAAAAATTTTAAAAAA
TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAGAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCTATCGATCCATGGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCGAACGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAG
GGGGACCCAATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
GTCTAAGATCAAACCAGAACAAGCGTTACGGCAGCACATGCTGGGCTCGGACATGAGCTGGTGCC
GCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTG
Found at i:1210059 original size:26 final size:26
Alignment explanation
Indices: 1210030--1210082 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1210020 GTTAACTTAG
*
1210030 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
1210056 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
1210082 G
1 G
1210083 ATCGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:1210204 original size:185 final size:185
Alignment explanation
Indices: 1209934--1210271 Score: 523
Period size: 185 Copynumber: 1.8 Consensus size: 185
1209924 GCAAGATCAG
* * * * *
1209934 CAGCACGCAGAGAGGGACCCGATCGATCCCCGTCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
1 CAGCAAGCAGAGAGGGACCCGATCGATCCCCGGCTTACGCATCCCACCCCTCTAGCCGGCTGAGC
* * * * * *
1209999 GCCCGTACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
66 GCCCGCACACTCGCTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACAG
1210064 AGTTCATTCCCAGTATAAGATCGAACTGGACTGAGGGTTGCTGTAGCAGGATCGA
131 AGTTCATTCCCAGTATAAGATCGAACTGGACTGAGGGTTGCTGTAGCAGGATCGA
* * *
1210119 CAGCAAGCAGAGGGGGACCCGATCGATCCCTGGCTTACGCATCCCATCCCTCTAGCCGGCTGAGC
1 CAGCAAGCAGAGAGGGACCCGATCGATCCCCGGCTTACGCATCCCACCCCTCTAGCCGGCTGAGC
*
1210184 GCCCGCACACTCGCTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACAG
66 GCCCGCACACTCGCTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACAG
* *
1210249 AGTTTATTCCCAGTCTAAGATCG
131 AGTTCATTCCCAGTATAAGATCG
1210272 GATCAAACTG
Statistics
Matches: 136, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
185 136 1.00
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (185 bp):
CAGCAAGCAGAGAGGGACCCGATCGATCCCCGGCTTACGCATCCCACCCCTCTAGCCGGCTGAGC
GCCCGCACACTCGCTTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAATCTAAGCATACAG
AGTTCATTCCCAGTATAAGATCGAACTGGACTGAGGGTTGCTGTAGCAGGATCGA
Found at i:1210251 original size:26 final size:26
Alignment explanation
Indices: 1210215--1210267 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1210205 GTTGACTTAG
1210215 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
1210241 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1210267 G
1 G
1210268 ATCGGATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1210737 original size:26 final size:25
Alignment explanation
Indices: 1210686--1210737 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
1210676 CAAAACTCCT
* *
1210686 ACTGAAAAATTTTAAAAATCCTTGA
1 ACTGAAAAATTTCAAAAATCCGTGA
1210711 ACTGCAAAAAGTTTCAAAAAT-CGTGA
1 ACTG-AAAAA-TTTCAAAAATCCGTGA
1210737 A
1 A
1210738 AAATAGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 4 0.17
26 10 0.43
27 9 0.39
ACGTcount: A:0.48, C:0.13, G:0.12, T:0.27
Consensus pattern (25 bp):
ACTGAAAAATTTCAAAAATCCGTGA
Found at i:1211860 original size:26 final size:26
Alignment explanation
Indices: 1211831--1211883 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1211821 GTTAACTTAG
1211831 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1211857 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1211883 G
1 G
1211884 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1212649 original size:341 final size:336
Alignment explanation
Indices: 1212021--1212665 Score: 993
Period size: 341 Copynumber: 1.9 Consensus size: 336
1212011 CGGCGATCAG
1212021 GGGTGCCGGGGGGTGTGCGTACATGATGTGCGATGGGTACTGGTACTTGCCCCTTATATTGGCCC
1 GGGTGCCGGGGGGTGTGCGTACATGATGTGCGATGGGTACTGGTACTTGCCCCTTATATTGGCCC
1212086 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
66 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
1212151 TGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTGTTTTCAAATGGTCACAAAATCTTG
131 TGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTGTTTTCAAATGGTCACAAAATCTTG
*
1212216 TACACTTCGAGTTTTTAGCTGATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACC
196 TACACTTCGAGTTTTTAGCTGATTTTTTTGGGCATGCCAAAAAAAATACAAGGATCACATCTACC
1212281 AAGTTTGGGGCCAAAAATCCATCCAAAAAAA-TTTTAAAAAATCTTGAACCGTAAAAAGTTTCAA
261 AAGTTTGGGGCCAAAAATCCATCCAAAAAAATTTTTAAAAAATCTTGAACCGTAAAAAGTTTCAA
1212345 AAATTATGATC
326 AAATTATGATC
* *
1212356 GGGTGGCCGGGGGGGTGTGCGCT-CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-G
1 GGGT-GCC-GGGGGGTGTGCG-TACATGATGTGCGATGGGTACTGGTACTTGCCCCTTATATTGG
* *
1212419 -CCCCCTATCCCTTATCAAACCTTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTCCTTT
63 CCCCCCTATCCCTCATCAAACC-TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-T--TTT
* * *
1212483 ATAGGTTTGCGTTGCCAGTAG-CACTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
124 ACAGGTTTGC--TACCAGTAGCCA-TTAAAGTGTCTGAAATGGGGACACTGTTTTCAAATGGTCA
* *
1212547 CAAAATCTTGTACACTTCGA-TTTTTAGCTGATTTTTTTTGGGGCATGCCAAGCAAAAATAGAA-
186 CAAAATCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTT-GGGCATGCCAA-AAAAAATACAAG
* *
1212610 GATCA-AGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAAAATTTTTAAAAAATC
248 GATCACA-TCTACCAAGTTTGGGGCCAAAAATCCATCCAAAAAAATTTTTAAAAAATC
1212666 CCCTAACCGG
Statistics
Matches: 283, Mismatches: 12, Indels: 23
0.89 0.04 0.07
Matches are distributed among these distances:
335 24 0.08
336 38 0.13
337 50 0.18
338 1 0.00
339 12 0.04
340 13 0.05
341 97 0.34
342 39 0.14
343 9 0.03
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (336 bp):
GGGTGCCGGGGGGTGTGCGTACATGATGTGCGATGGGTACTGGTACTTGCCCCTTATATTGGCCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTGTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGATTTTTTTGGGCATGCCAAAAAAAATACAAGGATCACATCTACC
AAGTTTGGGGCCAAAAATCCATCCAAAAAAATTTTTAAAAAATCTTGAACCGTAAAAAGTTTCAA
AAATTATGATC
Found at i:1214708 original size:159 final size:157
Alignment explanation
Indices: 1214406--1214803 Score: 408
Period size: 159 Copynumber: 2.5 Consensus size: 157
1214396 CCCGCCCGTC
* * * * * **
1214406 CGCTCGTTTCGTCGGTTGGCTTAGCCATACGGAGTTCATTTCCAGTCTAAGATCGGATAGGACCA
1 CGCTCGTTTTGTCGATTGGCTTAGGCATACGGAGTTCA-TTCCAGTCTAAGATCAGACA-GACTG
** * * *
1214471 AGGGTTACGGCAACAGGATCGACAGCATGCAGAGGGGGACCCGGTCGATCCCCAGCTTGTGCATC
64 AGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGTGCATC
*
1214536 CCGCCACTCTGGCCGGCTGAGCACCCGCA
129 CCGCCACTCTGGCCGGCTAAGCACCCGCA
* *
1214565 TGCTCGTTTTGTCCATTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACTG
1 CGCTCGTTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCC-AGTCTAAGATCAGA-CAGACTG
* * * **
1214630 AGGGTTGTAGCAGCAGGATCGATAGCACGCAGAGGGGGACTCGATCGATCCATTA-CTT-TCGCA
64 AGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCC-CCAGCTTGT-GCA
* * * *
1214693 TCCTGCCTCTTTGGCCGGCTAAGCCCCCGCA
127 TCCCGCCACTCTGGCCGGCTAAGCACCCGCA
* * * * * *
1214724 CGTTCGTTTCATG-GGA-TGACATAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAG
1 CGCTCGTTT--TGTCGATTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGA-CAGAC
1214787 TGAGGGTTGTGGCAGCA
62 TGAGGGTTGTGGCAGCA
1214804 CATGCTAGGC
Statistics
Matches: 198, Mismatches: 34, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
158 5 0.03
159 186 0.94
160 5 0.03
161 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (157 bp):
CGCTCGTTTTGTCGATTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACAGACTGAG
GGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGTGCATCCC
GCCACTCTGGCCGGCTAAGCACCCGCA
Found at i:1216541 original size:26 final size:26
Alignment explanation
Indices: 1216505--1216554 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1216495 GTTGATTTAG
1216505 GCATACAGAGTTCATTCCCAGTCTGA
1 GCATACAGAGTTCATTCCCAGTCTGA
*
1216531 GCATACGGAGTTCATTCCCAGTCT
1 GCATACAGAGTTCATTCCCAGTCT
1216555 AAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTGA
Found at i:1216836 original size:890 final size:888
Alignment explanation
Indices: 1214748--1221551 Score: 5126
Period size: 890 Copynumber: 7.5 Consensus size: 888
1214738 GATGACATAG
* * ** * *
1214748 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAGTGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTCGG
*
1214813 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCT-GGGCACCATCGTCGGAGCATCGTTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT-TGGGGCACCATCGTC---G-A-------AG
* ** * * * *
1214877 AACCTGACCGACGACATTGGGGTTTTGGCGATCGAGGGGCTGGGGGATGTGGGCACATGATGTGC
119 AACCTGACCGACGGCATTGGGG-TTCCGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
1214942 GATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
183 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
** * *
1215007 CCCCCTTAAAGAGTTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATG
248 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
1215072 GGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
313 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** * * * *
1215137 GCATGCCAACAATAATACAAGGATCACGTCTACCAAGTCCGGGGCAAAAAATCCTTTTGAAAAAA
378 GCATGCCAACAAAAATACGAGGATCACGTCTACCAAGTTTGGGGC-CAAAATTCATTTCAAAAAA
* * *
1215202 TTTTAAAAATTCTAGAACTGTAAAAAGTTTCAAAAATCGTGAAAAAATAGAAAATGAGTCGTCTT
442 TTTTAAAAAATCTCGAACT-TAAAAAGTTTCAAAAATCGTG-AAAAATAGAAAACGAGTCGTCTT
1215267 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
505 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
1215332 TTGGCATGCAGAAATATGAAGATGAGCTTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
570 ATGGCACGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
1215397 CATCCCATCTCTCTAGCCGACG-CA-G--TGCCCGCCTG--C-C-CGCTCGTTTCATCGGTTGGC
635 CATCCCGTCTCTCTAGCCGACGTAATGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGC
** ** * *
1215454 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGCAGCAAGATC
700 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * ** * * * *
1215519 GCCAGCACGTAGAAGGGGACCCGATTGATCCCCGGTTTGTGCATCCCACCCCTCTGGCCGGCTGA
765 GGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGA
* * *
1215584 GCGCCCGTACGCTCGTTTCGTTGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAA
830 GCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1215643 GCATATGGAGTTCAATCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGCAGCACATGC-CGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTC-G
* * * * * *
1215707 GCTCAGGCATATGCTGGTGCCGCATTTTGTC-T--TTGCCGG-AGCGTCGTCGAAGAACCTGAGC
65 GCTCGGGCATGTGCTGGTGCCGCATTTT-TCTTCGTTG-GGGCACCATCGTCGAAGAACCTGACC
* * *
1215768 GGCGGCGTTGGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
128 GACGGCATTGGGGTTCCG-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * * * * *
1215833 TGTTGCTTGGCCCTTCTATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCACACCCCGTTAA
192 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
1215898 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGAAACTT
257 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
1215963 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAA
322 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
1216028 CAAAAGTATGAGGATCATGTCTACCAAGTTTGGGGCCAAAATTCATTTCAAAAAATTTTAAAAAA
387 CAAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCATTTCAAAAAATTTTAAAAAA
** *
1216093 TCTCGAACCTTAAAAAGTTTCAAAAATCACGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACT
452 TCTCGAA-CTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
1216158 TCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACACAG
516 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACGCAG
* *
1216223 AAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTC
581 AAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
*
1216288 TCTAACCGACGTAATGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
646 TCTAGCCGACGTAATGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * *
1216353 AAG-TCATTCCCAGTCCAAGATTAGACCGGACTGAGGGTTGCGGCAGCAGGATTGGCAGCACGTA
711 GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTA
* * *
1216417 GAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTTAGCACCCGCAC
776 GA-GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGTAC
* * *
1216482 GCTCGTTTTGTGGGTTGATTTAGGCATACAGAGTTCATTCCCAGTCTGA
840 GCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
**
1216531 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATAGCACATGCTCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTCGG
1216596 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGAAGAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGAAGAACCTGACCGAC
*
1216661 GGCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGG
131 GGCATTGGGGTTCC-GCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
1216726 TACTTGGGCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
195 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
1216791 GCTTTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
260 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
1216856 TCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCGTGCCAAAAA
325 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * *
1216921 AAATATGAGGATCATGTCTATCAAGTTTGGGGCCAAAATTCGTTTCAAAAAAATTTTAAAAAATC
390 AAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCATTTC-AAAAAATTTTAAAAAATC
* * *
1216986 -CTGACCTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTC
454 TC-GAACTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
1217050 ACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATACAAATGGCATTGGCACGCAGAA
518 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACGCAGAA
* * * * **
1217115 ATATAAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGACTTGCGCATCCTATCTCTC
583 ATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * *
1217180 TGGCC-AGTGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGCCCGCTCATTTCATCGGTTGGCTTAG
648 TAGCCGA-CGTAATGCCCG--C--CCGCCCGCCCGCT----CGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * ** *
1217244 GCATACGGAGTTCATTCCTAGTATAAGATCGGACGGGAGCAAGGGTTATGGCAGCAGGATCGACA
704 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * ** * * * *
1217309 GCACGCAGAGGGGGTCCCGGTCGATCCCCGGCTTGTGCATCCCGCCACTCTGGCCGGCTGAGTGC
769 GCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGC
* * ** ** * *
1217374 CCGCACGCTCATTTCATCCGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAA
834 CCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * * *
1217429 GATCAGACCAGACTGAGGGTT--GTAGCAG-C-AGGATC-GACAGCACACAGGGGGATTCGACCG
1 G--CATA-C-G---GA--GTTCATTCCCAGTCTAAGATCGGACCGGAC-C-GAGGG-TT-G--CG
* * * * * * ** ***
1217489 ATCCA-CTACTTTCGCATCCCGCCCTCTGGC-TG-GCT-GAGCCCCCGTACGC-TCGTTTCGTGG
51 --GCAGC-AC-AT-GC-T--CG-GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-TT-G-GG
* * * * * * *** *** * * *
1217549 G-----TTGAC-ATAG-GCAT-ACGGA-GTTCATTCCTAG-TCTAAGATCGGACCGGAG-TGAGG
104 GCACCATCGTCGA-AGAACCTGACCGACG-GCATT-GGGGTTCCGCGATCGG---GGGGCCGGGG
* * * * **** *** * *
1217603 GTTGTGGCAGCACATGCTAG-GCTCGA-GCATGTGCTGGTGCCGTATTTTTCTTCA-CCGGGGCA
163 GGTGT-GC-GCACATGAT-GTG--CGATG--GGTGCTGGT-AC-T-TGGCCCTT-ATATTGGCCC
* * * * * ** * * * * **
1217665 CC-AT-CGTCGGAGC-ATCGTTGGAGAAC-CTGA---CC--GACG-GCA-TTGGGGTTCTGGCGA
217 CCTATCCCTC--ATCAAAC-CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT-TTAC-A
*** ** * * * * * * * *
1217719 TCGGGGGGCTGGGGGATGTGGGCACATGATGTGCGATGGGTGCTGGTACT-TGG-CCCTTATATT
277 --GGTTTGCT--GCCA-GT-AGC-C---AT-T--AAAGTGT-CT-GAAATGGGGACACTT-T-TT
* ** ** * * * *
1217782 GGCCCCCTATCCCTCATC-AAACCTTAAGAACTCACACCCCCTTAAAGAGCTTTT-G-AG-ATTT
325 ----TCAAAT-GGTCA-CAAAATCTT--G---T-ACA----CTT--CGAGTTTTTAGCTGAATTT
* * ** ** * * * *
1217843 TACAGGTT-TGC-GGCCAGTAGCCATTA--AAG-T---GTCTGA--AA---TGGGG--ACACTT-
372 T----TTTGTGCATGCCAACA-AAAATACGAGGATCACGTCT-ACCAAGTTTGGGGCCAAAATTC
* * * * ** *** *** *
1217892 TTTTC---AAATGTTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTATGCCA
431 ATTTCAAAAAAT-TTTAAAAAATCTCG-A-ACTTAAAAAGTTT--C--AA--AAATCG--TG--A
* * * * * * * ***
1217954 ACAAAAATACAAGGA-TCACGTC-TACCAAGTTCGGGGAAAAAACTCCTTC-TGAAAAAATTTTA
483 A-AAATAGAAAACGAGT--CGTCTTGCC-A--T----G---AAACTTC-ACGTG---AAGGCTTA
*** ** ** ** * ** *
1218016 AAAAATCTCGAGCCGTAAAAAGTTT-CGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
531 AGGGA-C-C-A-TTGTATGAA-TTTAC--AAGCCAT-AAAAAT-GGCAATG-G-CA-C--G-CA-
* ** * ** * * *** *
1218080 GAAACTTCACGTGAAGGCTTATGGGACCATTGTA-TGAATTTACAAGCCT-T--AAAAATGGCAT
580 GAAA--T-A--TGAA-G---ATGTG-CC--TAAACT-CACCTACCACCCTATCGATCCACGGC-T
* * ** * ** ** * * * ** * *
1218141 TG-GCATGCAGAAATATGAAGATGAGCCTAA-ACCCACCTACCAC-CCTATCGATC-CACGGCTT
631 TGCGCATCCCG-TCTCTCTAGCCGA-CGTAATGCCCGCCCGCC-CGCC---CGCTCGCTC-G-TT
* * ** * * * * * * * * *
1218202 GCGCTTCCCGTCT--CTCT-GGCCGACGTAGTGCCCGCCTGCCC-GCCTGCT-CGTTTCGTCGGT
688 TCG--T-CGGT-TGGCT-TAGGCATACGGAGT----TCATTCCCAG--T-CTAAGATTGGACCG-
* ** ** * * * * *** ** *
1218262 TGGCTTAGGCATACGG-AGTTCA--TTC-CCAG-TC-TA-AGATCAGACCAAACCAAGGGTTGCG
740 -GACCGAGGGTTGCGGCAG--CAGGATCGGCAGCACGTAGAG-GGGGACCCGACC----GAT-C-
* * *
1218320 GTAGTAGGATCACCAGCACGTAAAAGGGGACCCGATTGATCCCCGGCTTACGCATCCCACCCCTC
795 ----------C-CC-G-GC-T------TG---CG---CAT---C--C---CG-------CCCCTC
* * *
1218385 TGGTCGGCTGAGCGCCCGTACGCTCGTTTTGTTGGTTGACTTAGGCATAC-GAGTTCATTCCCAG
819 TGGCCAGCTGAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
1218449 TCTAA
884 TCTAA
* * * * * *
1218454 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTACGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTCGG
* * ** *
1218519 CTCGGGCATATGCTGGTGCCGCATTTTGTC-T--TTGCAGG-AGTATCGCCGAAGAACCTGACCG
66 CTCGGGCATGTGCTGGTGCCGCATTTT-TCTTCGTTG-GGGCACCATCGTCGAAGAACCTGACCG
* * * *
1218580 GCGGCATTGGGGTTCCGATGATCGGGGGGCCGGAGGGTGTGCGCACATGATGTGCGATGAGTGCT
129 ACGGCATTGGGGTTCCG-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * * * *
1218645 GGTGCTTGGCCCTTCTATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCACACGCCATTAAA
193 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
1218710 GAGCATTTGAGATTTGACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGAAACTTT
258 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
1218775 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAAC
323 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
1218840 AAAAATACGAGGATCACGTCTGCAAAGTTTGGGGCCAAAATTCATTTCAAAAAAATTTTAAAAAA
388 AAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCATTTC-AAAAAATTTTAAAAAA
* * * *
1218905 TCCCGAACTTCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTTGTCTTGCCATGAAACT
452 TCTCGAACTT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
1218970 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCAC-AAG
516 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACGCAG
* * *
1219034 AAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCATGGCTTACGCATCCCGCCTC
581 AAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * *
1219099 TCTAGCCGGCATAATGCCCGCCCACCCG--C-C-AGCTCGTTTCGTAGGTTGGCTTACGCATACG
646 TCTAGCCGACGTAATGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
1219160 GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTA
711 GAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTA
* ** ** *
1219225 GAGGGGGACCTGACAAATCTTCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTTAGCGCCCGTACG
776 GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGTACG
* * *
1219290 CTCATTTTGTGGGCTGATTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1219338 GCATACGAAGTTCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTGTGGCAGCACACGCTCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTCGG
* * * * *
1219403 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACAGGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGAAGAACCTGACCGAC
* *
1219468 GGCATTGGGGTTCTGGCGATC-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCGGG
131 GGCATTGGGGTTC-CGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * *
1219532 TACTTGGGCATTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAGA
195 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
1219597 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
260 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
1219662 TCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAAAAA
325 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
** * *
1219727 AAATACGAGGATCACGTCTACCAAGTTTGGGGAGAGAATTCGTTTCGAAAAAATTTTAAAAAAT-
390 AAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCATTTC-AAAAAATTTTAAAAAATC
* *
1219791 T----CTCAAAAAGTTTCAAAAATCGTGCAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
454 TCGAACTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
1219852 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACGCAGAAA
519 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACGCAGAAA
** * * *
1219917 TATGAAGATGTGTGTAAACTCACCTACCACCCTATCGATCGACGACTTACGCATCCCGTCTCTCT
584 TATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * * * * * * *
1219982 AACCGGCATAATGCCTGCCCGCCCGCCCGCCCGTTCATTTCGACGGTTGGCTTAGGCATACGGAG
649 AGCCGACGTAATGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * *
1220047 TTCATTCCCAATCTAAGATTGGACCAGATCGAGGGTTGCGGCAACAGGATCGGTAGCACGCAGAG
714 TTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAG
* * * * * *
1220112 GGGGACCCGACTGATCCCCGGCTTGCGTATCCCGCCCCTCTGGGCAGCTTAGCACCCGTAGGCTC
779 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGTACGCTC
* *
1220177 CTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 GTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1220222 G-AT-C-G-G---------A--C------CGGACC--A---AGGGTTACGGTAGCACATGCACGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTCGG
** * * * *
1220261 CTCGAACATGTGCTGGTGCCGTATTTTT-TTCGTCGGGGCACCATCGTCGGAGAACTTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGAAGAACCTGACCGAC
* *
1220325 GGCATTGGGGTTCTGGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
131 GGCATTGGGGTTC-CGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
1220390 GTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
194 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
1220455 AGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTT
259 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
1220520 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAA-TTTTTTGTGCAAGCCAACA
324 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * * * *
1220584 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCCAAACTCCTTCCGAAAAATTTT-AAAAATC
389 AAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCATTTCAAAAAATTTTAAAAAATC
** ** ** * *
1220648 TCGAAACGCAAAAAGTTTCAAAAATTATGAAAAATTTAAAACGAGTGGTCTCGCCATGAAACTTC
454 TCG-AACTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* *
1220713 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
518 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACGCAGAA
* * * * *
1220778 AGATGAAGATGTGCCAAAACCCACCTACCACCCTACCGATCCACGGCTTGTGCATCCCGTCTCTC
583 ATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * * * * * * *
1220843 TGGCCGACGGAGTGCCTGCCTGCCCACCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGA
648 TAGCCGACGTAATGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * **
1220908 GTTCATTCCCAGTCTAAGATCT-GATCGAACCGACGGTTGCAGTAGCAGGATCGGCAGCACGCGG
713 GTTCATTCCCAGTCTAAGAT-TGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAG
* * * * *
1220972 AGGGGGACCCGACCGATCCCTGGCTTACGCATCCCGCCCCTCTGG-CTGACAGAGCGCCCGCACG
777 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAG-CTGAGCGCCCGTACG
* * *
1221036 CTCGTTTCGTGGGTTGATTTAGGCATACAGAAGTTCATTCCCAGTCTAA
841 CTCGTTTTGTGGGTTGACTTAGGCATAC-GGAGTTCATTCCCAGTCTAA
** * *
1221085 GCATACACAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTCGG
* * ** *
1221150 CTCGGGCATATGCTGGTGCCGCATTTTGTCTTTGCCGGGGCACCAACGCTGGAGCATCGTCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTT-TCTTCGTTGGGGCACC-A---T----CGTCG--A-AG
* * *
1221215 AACCTGACCGGCGACATTGGGGTTTCGACGATCGGGGGGGCCGGGGCGGTGTGCGGCACATG-TG
119 AACCTGACCGACGGCATTGGGGTTCCG-CGATC-GGGGGGCCGGGG-GGTGTGC-GCACATGATG
*
1221279 TGCGGATGGGTGCTGGTACCTGGCCCTTATA-TGGCCCCCTATCCCTCATCAAACCTCGAGAACT
180 TGC-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
1221343 CACA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
244 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
1221407 AATAGGGACAGTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTT
309 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
1221472 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTCCTTTCAAA
374 TTGTGCATGCCAACAAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCATTTCAAA
*
1221537 AAAATTTAAAAAATC
439 AAATTTTAAAAAATC
1221552 CCGATCACTC
Statistics
Matches: 4643, Mismatches: 857, Indels: 809
0.74 0.14 0.13
Matches are distributed among these distances:
856 6 0.00
857 63 0.01
858 98 0.02
859 206 0.04
861 3 0.00
862 347 0.07
863 27 0.01
864 2 0.00
865 1 0.00
867 1 0.00
871 1 0.00
876 1 0.00
878 1 0.00
879 111 0.02
880 252 0.05
881 53 0.01
882 275 0.06
883 54 0.01
884 302 0.07
885 279 0.06
886 41 0.01
887 58 0.01
888 210 0.05
889 49 0.01
890 493 0.11
891 33 0.01
892 3 0.00
893 9 0.00
894 15 0.00
895 81 0.02
896 2 0.00
898 126 0.03
899 53 0.01
900 3 0.00
901 4 0.00
902 159 0.03
903 123 0.03
904 45 0.01
905 8 0.00
906 1 0.00
907 10 0.00
908 12 0.00
909 18 0.00
910 18 0.00
911 13 0.00
912 8 0.00
913 20 0.00
914 12 0.00
915 13 0.00
916 15 0.00
917 18 0.00
918 2 0.00
921 2 0.00
922 1 0.00
924 8 0.00
925 8 0.00
926 19 0.00
927 16 0.00
928 11 0.00
929 12 0.00
930 16 0.00
931 17 0.00
932 4 0.00
933 19 0.00
935 6 0.00
936 4 0.00
937 11 0.00
938 2 0.00
939 3 0.00
940 17 0.00
941 21 0.00
942 13 0.00
943 31 0.01
944 18 0.00
947 2 0.00
948 4 0.00
950 8 0.00
951 2 0.00
953 11 0.00
954 2 0.00
955 1 0.00
956 1 0.00
957 6 0.00
958 4 0.00
959 6 0.00
960 6 0.00
961 7 0.00
962 7 0.00
963 6 0.00
964 4 0.00
965 6 0.00
966 2 0.00
967 3 0.00
968 5 0.00
969 7 0.00
970 1 0.00
971 2 0.00
972 10 0.00
973 4 0.00
974 9 0.00
975 2 0.00
976 13 0.00
977 22 0.00
978 27 0.01
979 17 0.00
980 20 0.00
981 20 0.00
982 16 0.00
983 13 0.00
984 10 0.00
985 5 0.00
987 2 0.00
988 6 0.00
989 3 0.00
990 13 0.00
991 8 0.00
992 4 0.00
993 5 0.00
994 10 0.00
995 10 0.00
996 7 0.00
997 8 0.00
998 1 0.00
999 2 0.00
1000 2 0.00
1003 1 0.00
1004 21 0.00
1005 10 0.00
1006 6 0.00
1007 17 0.00
1008 14 0.00
1009 5 0.00
1010 19 0.00
1011 21 0.00
1012 17 0.00
1013 13 0.00
1014 9 0.00
1015 2 0.00
1016 4 0.00
1018 7 0.00
1019 7 0.00
1020 6 0.00
1021 6 0.00
1022 1 0.00
1023 3 0.00
1024 98 0.02
1025 102 0.02
1026 72 0.02
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (888 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTCGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGAAGAACCTGACCGAC
GGCATTGGGGTTCCGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCATTTCAAAAAATTTTAAAAAATCTC
GAACTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACGCAGAAATA
TGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAG
CCGACGTAATGCCCGCCCGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGG
GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCGCCCGTACGCTCGT
TTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1217582 original size:156 final size:159
Alignment explanation
Indices: 1217220--1217614 Score: 467
Period size: 156 Copynumber: 2.5 Consensus size: 159
1217210 CCCGCTCGCC
* * * * *
1217220 CGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTATAAGATCGGACGGGAGC-
1 CGCTCATTTCATCCGTTGACATAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGA-CT
* * * * ** * *
1217284 AAGGGTTATGGCAGCAGGATCGACAGCACGCAGAGGGGGTCCCGGTCGATCCCCGGCTTGTGCAT
65 GAGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGATCCCGACCGATCCACGACTTGTGCAT
**
1217349 CCCGCCACTCTGGCCGGCTGAGTGCCCGCA
130 CCCGCCACTCTGGCCGGCTGAGCCCCCGCA
* * * * *
1217379 CGCTCATTTCATCCGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCAGACTG
1 CGCTCATTTCATCCGTTGACATAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACTG
* * *
1217444 AGGGTTGTAGCAGCAGGATCGACAGCACACAG-GGGGAT-TCGACCGATCCACTACTT-TCGCAT
66 AGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGATCCCGACCGATCCACGACTTGT-GCAT
* *
1217506 CCCGCC-CTCTGGCTGGCTGAGCCCCCGTA
130 CCCGCCACTCTGGCCGGCTGAGCCCCCGCA
* * ** *
1217535 CGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGAGTG
1 CGCTCATTTCATCCGTTGACATAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACTG
1217600 AGGGTTGTGGCAGCA
66 AGGGTTGTGGCAGCA
1217615 CATGCTAGGC
Statistics
Matches: 202, Mismatches: 32, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
156 89 0.44
157 22 0.11
158 6 0.03
159 85 0.42
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
CGCTCATTTCATCCGTTGACATAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACTG
AGGGTTGTGGCAGCAGGATCGACAGCACACAGAGGGGATCCCGACCGATCCACGACTTGTGCATC
CCGCCACTCTGGCCGGCTGAGCCCCCGCA
Found at i:1218469 original size:26 final size:25
Alignment explanation
Indices: 1218429--1218480 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
1218419 GTTGACTTAG
1218429 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
1218454 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACG-AGTTCATTCCCAGTCTAA
1218480 G
1 G
1218481 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:1219341 original size:26 final size:26
Alignment explanation
Indices: 1219312--1219364 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1219302 GCTGATTTAG
* *
1219312 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTATAA
1219338 GCATACGAAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATTCCCAGTATAA
1219364 G
1 G
1219365 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:1219744 original size:885 final size:883
Alignment explanation
Indices: 1217559--1221555 Score: 5126
Period size: 884 Copynumber: 4.5 Consensus size: 883
1217549 GTTGACATAG
* * ** ** *
1217559 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGAGTGAGGGTTGTGGCAGCACATGCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTCGG
* * *
1217624 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCA---TC---G--TC---GGAGA
* * * *
1217689 ACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGCTGGGGGATGTGGGCACATGATGTGCG
120 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
1217754 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACAC
185 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
* *
1217819 CCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATGG
250 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
1217884 GGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT-
315 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* ** * *
1217948 -ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGAAAAAACTCCTTCTGAAAAAAT
380 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTC-AAAAAAAT
* * * *
1218012 TTTAAAAAATCTCGAGC-CGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCATCTTG
444 TTTAAAAAATCCCGAACTC--AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
1218076 CCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCAT
507 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAA
* * *
1218141 TGGCATGCAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
572 TGGCACG-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
* * * * * ** * *
1218206 TTCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGG
636 ATCCCGTCTCTCTAGCCGGCATAATGCCCGCCCACCCGCCCGCTCGTTTCGTAGGTTGGCTTAGG
** * * * **
1218271 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCGGTAGTAGGATCACCAG
701 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * * *
1218336 CACGTAAAAGGGGACCCGATTGATCCCCGGCTTACGCATCCCACCCCTCTGGTCGGCTGAGCGCC
766 CACGCAGAGGGGGACCCGACTGATCCCCGGCTTACGCATCCCGCCCCTCTGG-CAGCTGAGCGCC
*
1218401 CGTACGCTCGTTTTGTTGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
830 CGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1218454 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTACGGCAGCACATGTTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTCGG
* * ** * *
1218519 CTCGGGCATATGCTGGTGCCGCATTTTGTCTT--T-GCAGG-AGTATCGCCGAAGAACCTGACCG
66 CTCGGGCATGTGCTGGTGCCGCATTTT-TCTTCATCG-GGGCACCATCGTCGGAGAACCTGACCG
* ** * *
1218580 GCGGCATTGGGGTTCCGATGATCGGGGGGCCGGAGGGTGTGCGCACATGATGTGCGATGAGTGCT
129 GCGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * * *
1218645 GGTGCTTGGCCCTTCTATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCACACGCCATTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
* * *
1218710 GAGCATTTGAGATTTGACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGAAACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
1218775 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGCCAAC
324 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
1218840 AAAAATACGAGGATCACGTCTGCAAAGTTTGGGGCCAAAATTCATTTCAAAAAAATTTTAAAAAA
389 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-TTTCAAAAAAATTTTAAAAAA
* * *
1218905 TCCCGAACTTCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTTGTCTTGCCATGAAACT
453 TCCCGAAC-TCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
1218970 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACAAGA
517 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACGAGA
* * *
1219035 AATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCATGGCTTACGCATCCCGCCTCT
582 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCT
* *
1219100 CTAGCCGGCATAATGCCCGCCCACCCGCCAGCTCGTTTCGTAGGTTGGCTTACGCATACGGAGTT
647 CTAGCCGGCATAATGCCCGCCCACCCGCCCGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTT
** *
1219165 CATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGG
712 CATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGG
* ** ** * * *
1219230 GGACCTGACAAATCTTCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTTAGCGCCCGTACGCTCAT
777 GGACCCGACTGATCCCCGGCTTACGCATCCCGCCCCTCTGG-CAGCTGAGCGCCCGTACGCTCGT
* *
1219295 TTTGTGGGCTGATTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 TTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
1219338 GCATACGAAGTTCATTCCCAGTATAAGATCGGACCGGACCGAGGGTTGTGGCAGCACACGCTCGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTCGG
*
1219403 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACAGGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGGC
*
1219468 GGCATTGGGGTTCTGGCGATC-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCGGG
131 GGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
1219532 TACTTGGGCATTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAGA
196 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
1219597 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
261 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
1219662 TCAAATGTTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTACATGCCAAAAA
326 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* ** * * *
1219727 AAATACGAGGATCACGTCTACCAAGTTTGGGGAGAGAATTCGTTTCGAAAAAATTTTAAAAAAT-
391 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-TTTCAAAAAAATTTTAAAAAATC
* *
1219791 ----TCTCAAAAAGTTTCAAAAATCGTGCAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
455 CCGAACTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
1219852 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACGCAGAAA
520 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACG-AGAAA
** * * *
1219917 TATGAAGATGTGTGTAAACTCACCTACCACCCTATCGATCGACGACTTACGCATCCCGTCTCTCT
584 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCT
* * * *
1219982 AACCGGCATAATGCCTGCCCGCCCGCCCGCCCGTTCATTTCG-ACGGTTGGCTTAGGCATACGGA
649 AGCCGGCATAA----TGCCCGCCCACCCGCCCGCTCGTTTCGTA-GGTTGGCTTAGGCATACGGA
* * * * *
1220046 GTTCATTCCCAATCTAAGATTGGACCAGATCGAGGGTTGCGGCAACAGGATCGGTAGCACGCAGA
709 GTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGA
* * * * *
1220111 GGGGGACCCGACTGATCCCCGGCTTGCGTATCCCGCCCCTCTGGGCAGCTTAGCACCCGTAGGCT
774 GGGGGACCCGACTGATCCCCGGCTTACGCATCCCGCCCCTCT-GGCAGCTGAGCGCCCGTACGCT
* *
1220176 CCTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 CGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1220222 G-AT-CG--G---------A--C------CGGACC--A---AGGGTTACGGTAGCACATGCACGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTCGG
** * * * *
1220261 CTCGAACATGTGCTGGTGCCGTATTTTT-TTCGTCGGGGCACCATCGTCGGAGAACTTGACCGAC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGGC
*
1220325 GGCATTGGGGTTCTGGCGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
131 GGCATTGGGGTTCTGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
1220390 GTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
195 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
* *
1220455 AGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTT
260 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
1220520 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAA-TTTTTTGTGCAAGCCAACA
325 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * **
1220584 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCCAAACTCCTTCCGAAAAATTTT-AAAAATC
390 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCAAAAAAATTTTAAAAAATC
* * ** ** * *
1220648 TCGAAACGCAAAAAGTTTCAAAAATTATGAAAAATTTAAAACGAGTGGTCTCGCCATGAAACTTC
455 CCG-AACTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
1220713 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
519 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACG-AGAA
* * * **
1220778 AGATGAAGATGTGCCAAAACCCACCTACCACCCTACCGATCCACGGCTTGTGCATCCCGTCTCTC
583 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTC
* * ** * * * *
1220843 TGGCCGACGGAGTGCCTGCCTGCCCACCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGA
648 TAGCCG--GCA-T-AATGCCCGCCCACCCGCCCGCTCGTTTCGTAGGTTGGCTTAGGCATACGGA
* * * * * *
1220908 GTTCATTCCCAGTCTAAGATCT-GATCGAACCGACGGTTGCAGTAGCAGGATCGGCAGCACGCGG
709 GTTCATTCCCAGTCTAAGAT-TGGACCAAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
* * * * *
1220972 AGGGGGACCCGACCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCTGACAGAGCGCCCGCACGC
773 AGGGGGACCCGACTGATCCCCGGCTTACGCATCCCGCCCCTCTGGCAG-CTGAGCGCCCGTACGC
* * *
1221037 TCGTTTCGTGGGTTGATTTAGGCATACAGAAGTTCATTCCCAGTCTAA
837 TCGTTTTGTGGGTTGACTTAGGCATAC-GGAGTTCATTCCCAGTCTAA
*
1221085 GCATAC-ACAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTCG
* *** *
1221149 GCTCGGGCATATGCTGGTGCCGCATTTTGTCTTTGCCGGGGCACCAACGCTGGAGCATCGTCAGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTT-TCTTCATCGGGG---C-A--C-----CATCGTCGGA
* *
1221214 GAACCTGACCGGCGACATTGGGGTT-TCGACGATCGGGGGGGCCGGGGCGGTGTGCGGCACATG-
118 GAACCTGACCGGCGGCATTGGGGTTCT-GGCGATC-GGGGGGCCGGGG-GGTGTGC-GCACATGA
* *
1221277 TGTGCGGATGGGTGCTGGTACCTGGCCCTTATA-TGGCCCCCTATCCCTCATCAAACCTCGAGAA
179 TGTGC-GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
*
1221341 CTCACA-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
243 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
1221405 GAAATAGGGACAGTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTT
308 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* *
1221470 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTCCTTTCA
373 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTTCA
1221535 AAAAAA-TTTAAAAAATCCCGA
437 AAAAAATTTTAAAAAATCCCGA
1221556 TCACTCGTTT
Statistics
Matches: 2708, Mismatches: 312, Indels: 156
0.85 0.10 0.05
Matches are distributed among these distances:
856 6 0.00
857 65 0.02
858 95 0.04
859 206 0.08
861 5 0.00
862 338 0.12
863 27 0.01
864 4 0.00
865 2 0.00
867 1 0.00
871 1 0.00
876 1 0.00
878 1 0.00
879 113 0.04
880 76 0.03
882 242 0.09
883 252 0.09
884 478 0.18
885 286 0.11
886 41 0.02
887 1 0.00
889 44 0.02
890 3 0.00
891 8 0.00
893 3 0.00
894 3 0.00
895 81 0.03
896 4 0.00
897 1 0.00
901 1 0.00
902 161 0.06
903 108 0.04
904 50 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (883 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTCGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGGC
GGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCAAAAAAATTTTAAAAAATCC
CGAACTCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCACGAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTAG
CCGGCATAATGCCCGCCCACCCGCCCGCTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATTGGACCAAACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
CCGACTGATCCCCGGCTTACGCATCCCGCCCCTCTGGCAGCTGAGCGCCCGTACGCTCGTTTTGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1221099 original size:26 final size:27
Alignment explanation
Indices: 1221058--1221111 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
1221048 GTTGATTTAG
1221058 GCATACAGAAGTTCATTCCCAGTCTAA
1 GCATACAGAAGTTCATTCCCAGTCTAA
*
1221085 GCATACA-CAGTTCATTCCCAGTCTAA
1 GCATACAGAAGTTCATTCCCAGTCTAA
1221111 G
1 G
1221112 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (27 bp):
GCATACAGAAGTTCATTCCCAGTCTAA
Found at i:1221776 original size:26 final size:26
Alignment explanation
Indices: 1221740--1221792 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1221730 GTTGACTTAG
1221740 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1221766 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1221792 G
1 G
1221793 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1222188 original size:680 final size:680
Alignment explanation
Indices: 1220880--1222910 Score: 3295
Period size: 680 Copynumber: 3.0 Consensus size: 680
1220870 CCGCCCGCTT
* * * * * *
1220880 GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGATCGAACCGACGGT
1 GTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGT
* * * * * * *
1220945 TGCAGTAGCAGGATCGGCAGCACGCGGAGGGGGACCCGACCGATCCCTGGCTTACGCATCCCGCC
66 TGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCGCC
** *
1221010 CCTCTGG-CTGACAGAGCGCCCGCACGCTCGTTTCGTGGGTTGATTTAGGCATACAGAAGTTCAT
131 CCTCTGGCCTG-TTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCAT
* * *
1221074 TCCCAGTCTAAGCATACACAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGC-A
194 TCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCGA
* * * * * * *
1221138 GCACATGCTGGGC-TCGGGCATATGCTGGTGCCGCATTTTGTCTTTGCCGGGGCACCAACG-CTG
259 -CAGATGTTGGGCAT-AGGCATGTGCTGGTGTCGCATTTT-TCTTTGCCGAGGCACCATCGTC-G
* * * *
1221201 GAGCATCGTCAGAGAACCTGACCGG-CGACATTGGGGTTTCGACGATCGGGGGGGCCGG-GGCGG
320 GAGCATCGTCGGAGAACCTGACCGGAAG-CATTGGGGTTTCGATGATCGGGGGGGCCGGAGG-TG
* * * * * *
1221264 TGTGCGGCACATG-TGTGCGGATGGGTGCTGGTACCTGGCCCTTATA-TGGCCCCCTATCCCTCA
383 TGTGC-ACACAAGATGTGC-AATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTGTCCCTCA
*
1221327 TCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGC
446 TCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
1221392 CATTAAAGTGTCTGAAATAGGGACAGTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTT
511 CATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTT
*
1221457 TTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAATTTTGGGGCC
576 TTTAGCTGACTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
*
1221522 AAAACTCCTTTCAAAAAAATTTAAAAAATCCCGATCACTC
641 AAAACTCCTTTCGAAAAAATTTAAAAAATCCCGATCACTC
*
1221562 GTTTCGTCGGTTGGCTTAGGTATACGGAGTCCATTCCCAGTCTAAGATCAGATCGGATCGAGGGT
1 GTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGT
*
1221627 TGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCACC
66 TGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCGCC
* *
1221692 TCTCTGGCCAGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
131 CCTCTGGCCTGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
*
1221757 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGTTTGCAGCGACA
196 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCGACA
1221822 GATGTTGGGCATAGGCATGTGCTGGTGTCGCATTTTTCTTTGCCGAGGCACCATCGTCGGAGCAT
261 GATGTTGGGCATAGGCATGTGCTGGTGTCGCATTTTTCTTTGCCGAGGCACCATCGTCGGAGCAT
*
1221887 CGCCGGAGAACCTGACCGGAAGCATTGGGGTTTCGATGATCGGGGGGGCCGGAGGTGTGTGCACA
326 CGTCGGAGAACCTGACCGGAAGCATTGGGGTTTCGATGATCGGGGGGGCCGGAGGTGTGTGCACA
* *
1221952 CAAGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTGTCCCTCGTCAAACCTCA
391 CAAGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTGTCCCTCATCAAACCTCG
1222017 AGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
456 AGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
1222082 TCTGAAATGGGGACAGTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAC
521 TCTGAAATGGGGACAGTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAC
1222147 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
586 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
*
1222212 TCGAAAAAATTTAAAAAATCCCGATCGCTC
651 TCGAAAAAATTTAAAAAATCCCGATCACTC
* *
1222242 GTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCATACCGGATCGAGGGT
1 GTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGT
1222307 TGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCGCC
66 TGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCGCC
1222372 CCTCTGGCCTGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
131 CCTCTGGCCTGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
** * * *
1222437 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACTAGACTGAGGGTTGCAGTGATA
196 CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCGACA
*
1222502 GATGTTGGGCATAGGCATGTGCTGGTGTCGTATTTTTCTTTGCCGAGGCACCATCGTCGGAGCAT
261 GATGTTGGGCATAGGCATGTGCTGGTGTCGCATTTTTCTTTGCCGAGGCACCATCGTCGGAGCAT
*
1222567 CGTCGGAGAACCTGACCGGAAGCATTGGGGTTTCGATGATCGGAGGGGCCGGAGGTGTGTGCACA
326 CGTCGGAGAACCTGACCGGAAGCATTGGGGTTTCGATGATCGGGGGGGCCGGAGGTGTGTGCACA
1222632 CAAGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTGTCCCTCATCAAACCTCG
391 CAAGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTGTCCCTCATCAAACCTCG
* *
1222697 AGAACTCACACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGT
456 AGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
1222762 GTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGA
520 GTCTGAAATGGGGACAGTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
1222827 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGGTTGGGGCCAAAACTCCT
585 CTTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
*
1222892 TCCGAAAAAATTTAAAAAA
650 TTCGAAAAAATTTAAAAAA
1222911 ATCTTAAACC
Statistics
Matches: 1263, Mismatches: 77, Indels: 19
0.93 0.06 0.01
Matches are distributed among these distances:
679 30 0.02
680 772 0.61
681 294 0.23
682 165 0.13
683 2 0.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (680 bp):
GTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGT
TGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCGCC
CCTCTGGCCTGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
CCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCGACA
GATGTTGGGCATAGGCATGTGCTGGTGTCGCATTTTTCTTTGCCGAGGCACCATCGTCGGAGCAT
CGTCGGAGAACCTGACCGGAAGCATTGGGGTTTCGATGATCGGGGGGGCCGGAGGTGTGTGCACA
CAAGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTGTCCCTCATCAAACCTCG
AGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACAGTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAC
TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
TCGAAAAAATTTAAAAAATCCCGATCACTC
Found at i:1222456 original size:26 final size:26
Alignment explanation
Indices: 1222420--1222472 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1222410 GTTGACTTAG
1222420 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1222446 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1222472 G
1 G
1222473 ATCGGACTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1223458 original size:664 final size:662
Alignment explanation
Indices: 1222562--1223858 Score: 1990
Period size: 664 Copynumber: 2.0 Consensus size: 662
1222552 CCATCGTCGG
* * *
1222562 AGCATCGTCGGAGAACCTGACCGGAAGCATTGGGGTTTCGATGATCGGAGGGGCCGGAGGTGTGT
1 AGCATCGTCGGAGAACCTGACCGGAAGCATTGGGGTTCCGACGATCGGAGGGGCCGGAGGGGTGT
* * *
1222627 GCACACAAGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTGTCCCTCATCAAA
66 GCACACAAGATGTGCAATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
1222692 CCTCGAGAACTCACACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATT
131 CCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
1222757 AAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTA
196 AAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
1222822 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGGTTGGGGCCAAAA
261 GCTGAATTTTTTTATGCATGCCAAAAAAAATACAAAGATCATGTCTACCAAGGTTGGGGCCAAAA
* *
1222887 CTCCTTCCGAAAAAATTTAAAAAAATCTTAAACCGCAAAA-AGTTTC-AAAAATCGTGAAAAATA
326 CTCCTTCAGAAAAAATTTAAAAAAATCCTAAACCGCAAAACA-TTTCAAAAAAT-GTGAAAAATA
* * * *
1222950 TAAAACGAGTGGTCTTGCCATGAAACTTCACGTGAA-GCCTTAAGGGACCATTGTATGAATTTTC
389 GAAAACGAGTCGTCTTGCCATGAAACTTCACGT-AACGCCTTAAGGGACCATTGCATGAATTTAC
* *
1223014 AAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
453 AAGCCAT-AAAATGGCATTGGCAAGCAGAAAAATGAAGATGTCCCTAAACCCACCTACCACCCTA
* * * * * * *
1223079 TCGATCCACGGCTTGCACATCTCGTCTCTCTGGCCAACATAGTGCCCGCCCGTCCGCCCGCTCGT
517 TCGATCCACAGCTTACACATCCCATCTCTCTGGCCAACATAGTACCCGCCCGCCCGCCCGCTCAT
* * *
1223144 TTCTTCGGTTGGTTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCTGACCAGACCGATGGTTG
582 TTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGATGGTTG
1223209 CGGTAGCAGGATCGAC
647 CGGTAGCAGGATCGAC
* * ** * * *
1223225 AGCATCGTCGGAGAAGCTGATCGGTGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGTGGGGGTG
1 AGCATCGTCGGAGAACCTGACCGGAAGCATTGGGGTTCCGACGATCGGAGGGGCCGG-AGGGGTG
* * *
1223290 TGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
65 TGCACACAAGATGTGCAATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
1223355 ACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTA-TAGCCA
130 ACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-AGTAGCCA
* *
1223419 TTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
194 TTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* ** * *
1223484 TAGTTGAATTTTTTTATGCATGCCATCAAAAATACAAAGATCATGTCTACCAAGTTTTGGGCCAA
259 TAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAAGATCATGTCTACCAAGGTTGGGGCCAA
** *
1223549 AACTCCTTCAGAAAAAATTTTGAAAAATCCTGAACCGCAAAACATTTCAAAAAATGTGAAAAATA
324 AACTCCTTCAGAAAAAATTTAAAAAAATCCTAAACCGCAAAACATTTCAAAAAATGTGAAAAATA
*
1223614 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTAACGGCTTAAGGGACCATTGCATGAATTTACA
389 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTAACGCCTTAAGGGACCATTGCATGAATTTACA
* *
1223679 AGCCATAAAATGGCATTGGCAGGGAGAAAAATGAAGATGTCCCTAAACCCACCTACCACCCTATC
454 AGCCATAAAATGGCATTGGCAAGCAGAAAAATGAAGATGTCCCTAAACCCACCTACCACCCTATC
* * **
1223744 GGTCCACAGCTTACGCATCCCATCTCTCTGGCCGGCATAGTACCCGCCCGCCCGCCCGCTCATTT
519 GATCCACAGCTTACACATCCCATCTCTCTGGCCAACATAGTACCCGCCCGCCCGCCCGCTCATTT
*
1223809 CATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
584 CATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC
1223859 GGACTGAATG
Statistics
Matches: 571, Mismatches: 58, Indels: 10
0.89 0.09 0.02
Matches are distributed among these distances:
663 206 0.36
664 357 0.63
665 8 0.01
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (662 bp):
AGCATCGTCGGAGAACCTGACCGGAAGCATTGGGGTTCCGACGATCGGAGGGGCCGGAGGGGTGT
GCACACAAGATGTGCAATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
CCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
AAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
GCTGAATTTTTTTATGCATGCCAAAAAAAATACAAAGATCATGTCTACCAAGGTTGGGGCCAAAA
CTCCTTCAGAAAAAATTTAAAAAAATCCTAAACCGCAAAACATTTCAAAAAATGTGAAAAATAGA
AAACGAGTCGTCTTGCCATGAAACTTCACGTAACGCCTTAAGGGACCATTGCATGAATTTACAAG
CCATAAAATGGCATTGGCAAGCAGAAAAATGAAGATGTCCCTAAACCCACCTACCACCCTATCGA
TCCACAGCTTACACATCCCATCTCTCTGGCCAACATAGTACCCGCCCGCCCGCCCGCTCATTTCA
TCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGATGGTTGCGGT
AGCAGGATCGAC
Found at i:1225353 original size:694 final size:691
Alignment explanation
Indices: 1224008--1225356 Score: 1965
Period size: 694 Copynumber: 1.9 Consensus size: 691
1223998 TCCCACCTAA
* * * * * *
1224008 GCATATGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCAGCTGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTGCAGCAGCACAAGCTAGG
* * *
1224073 CTCGGGCATGTGCTGGTGCCGCATTTTCTTTCATCAGGGTACCATCACCGGAGCATCATCGGAGA
66 CTCGGACATATGCTGGTGCCGCATTTTCTTTCATCAGGGCACCATCACCGGAGCAT-ATCGGAGA
1224138 ACCTGACCGACGGCATTACGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTA-GGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
1224203 GATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCTAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACA
*
1224268 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTATCCACTAAAGTGTCTGAAATGG
259 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTCCCAGTATCCACTAAAGTGTCTGAAATGG
* *
1224333 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
324 GGACACTTTTTTAAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
** * * **
1224398 CATTCCAAAAAATATCCAGGGATCACGTCTACCAATTTTGGGGCCAAAAATCCTTCCGAAAGACT
389 CACGCCAAAAAATATCCAGGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAG
* * * * *
1224463 TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAATGAGTCGTCTTGC
454 TCTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGC
* * *
1224528 CATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGAGACAATTGTATGAATTTACAAGACATAAAAATGACATT
* *
1224593 GGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTCGCGCA
584 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGCGCA
1224658 TCCCGCCCGTCAGCCCGCCCGCTCGTTTCGTCGATGGGCTTAG
649 TCCCGCCCGTCAGCCCGCCCGCTCGTTTCGTCGATGGGCTTAG
* * *
1224701 GCATACGGAGTTCATTCCCGGTCTAAGATCGGACTGGACCGAAGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTGCAGCAGCACAAGCTAGG
* * * **
1224766 CTCGGACATATGCTGGTGCTGCATTTT-TCTTCGTTAGGGCACCATCGTCGGAGCAT-TGCGGAG
66 CTCGGACATATGCTGGTGCCGCATTTTCT-TTCATCAGGGCACCATCACCGGAGCATAT-CGGAG
* ** * **
1224829 AACCTGATCGGTGTCATT-GGCATTCCGGTGATC-GGGGGGCCGGGAGGGGTGTGCGCACATGAT
129 AACCTGACCGACGGCATTAGG--TTCCGACGATCGGGGGGGCC-GG-GGGGTGTGCGCACATGAT
*
1224892 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACT
* * * *
1224957 CACACCCGCTTAAAGAGCATTTGCGATTTTACAGGTTTGTTCCCAGTATCCATTAAAGTGTCTGA
255 CACACCC-CTTAAAAAGCATTTGAGATTTTACAGGTTTGCTCCCAGTATCCACTAAAGTGTCTGA
1225022 AATGGGGACACTTTTTTAAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTT
319 AATGGGGACACTTTTTTAAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTT
* * *
1225087 TTGTTCACGCCAACAAAA-ATACTA-GGATCACGTCTACGAAGTTTGGGGCCAAAACA-CCTTCC
384 TTGTGCACGCCAA-AAAATAT-CCAGGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCC
*
1225149 GAAAAAAGTCTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
446 GAAAAAAGTCTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * *
1225214 CATCTTGGCGTGAAACTTCGCGTGAAGGCTTAAGAGACAATTGTATGAATTTACAAGACATAAAA
511 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACAATTGTATGAATTTACAAGACATAAAA
** * * * *
1225279 ATGACATTGGCATGCAGATATTTGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCGCGG
576 ATGACATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
*
1225344 CTTGCGCATCCCG
641 CTCGCGCATCCCG
1225357 TCTCTCTGGC
Statistics
Matches: 582, Mismatches: 64, Indels: 19
0.88 0.10 0.03
Matches are distributed among these distances:
690 2 0.00
691 9 0.02
692 31 0.05
693 188 0.32
694 345 0.59
695 7 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (691 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGGTTGCAGCAGCACAAGCTAGG
CTCGGACATATGCTGGTGCCGCATTTTCTTTCATCAGGGCACCATCACCGGAGCATATCGGAGAA
CCTGACCGACGGCATTAGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTAATCAAACCTCGAGAACTCACACC
CCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTCCCAGTATCCACTAAAGTGTCTGAAATGGGG
ACACTTTTTTAAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
CGCCAAAAAATATCCAGGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAGTC
TAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGAGACAATTGTATGAATTTACAAGACATAAAAATGACATTGG
CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGCGCATC
CCGCCCGTCAGCCCGCCCGCTCGTTTCGTCGATGGGCTTAG
Found at i:1228106 original size:26 final size:26
Alignment explanation
Indices: 1228066--1228118 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1228056 GTTGACTTAG
1228066 GCATACAGAGATCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
* *
1228092 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
1228118 G
1 G
1228119 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:1228564 original size:892 final size:891
Alignment explanation
Indices: 1226314--1229748 Score: 4585
Period size: 895 Copynumber: 3.9 Consensus size: 891
1226304 GTTGGGTTAG
* * * * * *
1226314 GCATATGGTGTTCATTCCTAGTCTATGATTGGACCAGACCGAGAGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCAGGG
* * *
1226379 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGTA-GCACCATCGCCGGAGAACCTAACCAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCG-AGGCACCATCGTCGGAGAACCTGACCAG
* * *
1226443 CGGCATTGGGGTTTCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
130 CGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * * *
1226508 GCTATTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAA
* * * * *
1226573 AAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGGAATGGGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACAC-TT
* * *
1226638 TTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTT-CCTGAATTTTTTTGTGCAAGCCA
324 TTTTCAAATGGTCACAAAATCTTGTACACTTC-GATTTTTTAGCTGAATTTTTTTGTGCATGCCA
** * * ** * *
1226702 TCAAAAATAAAAGGATCATGTCTACTGAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
388 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAA
* **
1226767 AATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG---
453 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * *
1226829 -----A---AA--C--AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCACGT
518 CTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGC
*
1226882 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTC
583 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
1226947 TCTCTAGCCAGCGTAGTG----CCCGCCCGTCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATA
648 TCTCTAGCCGGCGTAGTGCCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * * *
1227008 CGGAGTTCATTCCCAGTCTAAGATCAGA-CTGAACCAAGGGCTGCAGCTA-CAGGATCGACAGTA
713 CGGAGTTCATTCCCAATCTAAGATCAGACCAG-ACCGAGGGTTGCGGC-AGCAGGATCGGCAGCA
* * * * * * **
1227071 CGCAGAGGCGAACCTGACTGATCCCTGGCTTGCGCATCCCACCCCACTGGCTGGCTAAGCGCTTG
776 CGCAGAGGGGACCCGGAC-GATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCG
* * *
1227136 CACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAA
840 CACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * * * * *
1227188 GCATATGGAGTTCATTCCTAGTCTAAGATCGAATCAGACTGAGGGTTACGGTAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCAGGG
* * * *
1227253 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGAGGCAACATCGCCAAAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCAT---C---G--T---CGGAGA
* *** *
1227318 ACCTGACTATTTGCATTAGGGTTCCAACGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGATGT
120 ACCTGACCAGCGGCATTAGGGTTCCGACGATCGGGGGGGCC-G-GGGGGTGTGCGCACATGATGT
* *
1227383 GTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATTCCTCATCAAACCTCGAGAACTCA
183 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
1227447 CACCCCCTTAAAGAGCATCTAAGATTTTACAAGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAA
248 CACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1227512 -AGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGACTTTTTAGCTGAATTTTTT
313 TA-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTT
* * *
1227576 TGTGCATGCCAACAAAAATA-AAGGGATCACATCTACCAAGTTTGGGGCCAAAAC-CCATTCTGA
377 TGTGCATGCCAAAAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCA-TCCGA
* *
1227639 AAAAATTTTAAAAAATTCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAGAACGAGTCG
440 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
1227704 TCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT
505 TCTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAAT
* *
1227769 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCC
570 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
1227834 AGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCAGT
635 TGCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * * *
1227899 TGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGTGTTGTGGCAGCAG
700 TGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAG
* * * * * *
1227964 GATCGGTAGCACACAGAGGGGGACCCGGTCGACCCCCGGCTTGCACATCCCACCCCTCTGGCCGG
765 GATCGGCAGCACGCAGA-GGGGACCCGGACGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGG
* * * *
1228029 CGGAGCGCCCGTATGCTCATTTCGTGGGTTGACTTAGGCATACAGAGATCATTCCCAGTCTAA
829 CTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
1228092 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGGCCGAGGGTTGCAGCAGCACATGCAGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCAGGG
* ***
1228157 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGTCGGAGAACCTCATTGGC
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGTCGGAGAACCTGACCAGC
* * ** *
1228222 CGCATTGGGGTTCCGACGATCGGGGGAACCGGGGGGTGTGCGCACATGATATGCGATGGGTGCTG
131 GGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
1228287 GTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCACTTAAAG
196 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAG
1228352 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTT
261 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTT
*
1228417 TTCAAATGGTCAAAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
326 TTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* * * * *
1228482 AAAATACAAGGATCACGTGTACCAAGTTTGGGACAAAAACTCCATCCAAAAAAATTTTAAAAGAT
391 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAAT
*
1228547 CCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
456 CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
1228612 CACGTGAAGGCTTAAGTGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGA
521 CAAGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGA
1228677 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
586 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * **
1228742 CTGGCCGGCGTAGTGCCCGCCCGCTCGCCTGCCCGCCCTTTCGTTTCGTCGGTTGGCTTAGGCAT
651 CTAGCCGGCGTAGTG-CC-CCC-C-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * ** * *
1228807 ACGGAGTTCATTCCCAATCTAAGATTAGACCAGACTGAGGGTTGCGATAGCAGGATTGGCAACAC
712 ACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCAC
* * * * * *
1228872 GTAAAGGGGACTC-GACCGATCCCTGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGTGCCCAC
777 GCAGAGGGGACCCGGA-CGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
1228936 ACGCTCCTTTCGTGTGTTGACTTAGGCATACACAGTTCATTCCCAGTCTCA
841 ACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
1228987 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCACATGCTA-G
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGC-AGG
* *
1229051 GCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGAACCTGACC-G
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGTCGGAGAACCTGACCAG
* *
1229114 ACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGCGGGTGTGCACACATGATGTGCGATGGTTG
130 -CGGCATTAGGGTTCCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTG
** *
1229179 CTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCACTTA
193 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTA
*
1229244 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACT
* * * * *
1229309 TTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTGCGCATTCCC
323 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * *
1229374 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAAAAA-TTTGAAA
388 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAA
** * * * * *
1229438 AATCTTGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCACGAAA
453 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
1229503 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGC
518 CTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGC
* *
1229568 AGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTC
583 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * ** * * *
1229633 TCTCTGGCCGGCATTGTGCCAGCTCGCCCACCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
648 TCTCTAGCCGGCGTAGTGCCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * *
1229698 CGGAGTTCATTCCCAATCTATGATCAGATCAGACCGAGGGATGTGGCAGCA
713 CGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
1229749 CATGCTGGGC
Statistics
Matches: 2251, Mismatches: 258, Indels: 88
0.87 0.10 0.03
Matches are distributed among these distances:
873 1 0.00
874 94 0.04
877 1 0.00
880 1 0.00
884 10 0.00
885 200 0.09
886 95 0.04
887 50 0.02
890 79 0.04
891 52 0.02
892 413 0.18
893 48 0.02
894 292 0.13
895 414 0.18
896 94 0.04
898 2 0.00
900 123 0.05
901 1 0.00
903 1 0.00
904 270 0.12
905 10 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCAGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGTCGGAGAACCTGACCAGC
GGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAAT
CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CAAGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTAGCCGGCGTAGTGCCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
AGGGGACCCGGACGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCT
CATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:1229331 original size:895 final size:892
Alignment explanation
Indices: 1226314--1229737 Score: 4552
Period size: 892 Copynumber: 3.8 Consensus size: 892
1226304 GTTGGGTTAG
* * * * * *
1226314 GCATATGGTGTTCATTCCTAGTCTATGATTGGACCAGACCGAGAGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
* *
1226379 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGTA-GCACCATCGCCGGAGAACCTAACC-A
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCG-AGGCACCATCGCCGGAGAACCTGACCGA
* * *
1226442 GCGGCATTGGGGTTTCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
130 -CGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
1226507 T-GCTATTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
194 TCG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTA
* * * *
1226571 AAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGGAATGGGGACACT
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-
* * *
1226636 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTTTTT-CCTGAATTTTTTTGTGCAAGC
322 TTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GATTTTTTAGCTGAATTTTTTTGTGCATGC
** * * ** * *
1226700 CATCAAAAATAAAAGGATCATGTCTACTGAGTTTAGGGCCAAAACTCCTTCCGAAAAAATTTTAA
386 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAA
* **
1226765 AAAATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG-
451 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
1226829 ------A----AA--C--AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCAC
516 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCAT
* *
1226880 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCG
581 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
1226945 TCTCTCTAGCCAGCGTAGT---G--C-C-CGCCCGTCCGCTCGCTCGTTTCGTCGGTTGGCTTAG
646 TCTCTCTAGCCGGCGTAGTGCCGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
1227003 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGAACCAAGGGCTGCAGCTA-CAGGATCGA
711 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAG-ACCGAGGGTTGC-GATAGCAGGATCGG
* * * * * *
1227066 CAGTACGCAGAGGCGAACCTGACTGATCCCTGGCTTGCGCATCCCACCCCACTGGCTGGCTAAGC
774 CAGCACGCAAAGG-GGACC-GACCGATCCCTGGCTTGCGCATCCCACCCCTCTGGC-GGCTGAGC
** * * *
1227131 GCTTGCACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAA
836 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * * * * *
1227188 GCATATGGAGTTCATTCCTAGTCTAAGATCGAATCAGACTGAGGGTTACGGTAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
* * * ** *
1227253 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCACCGAGGCAACATCGCCAAAGCATCACCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGCCGGAG-A--ACC--TG-
* *
1227318 ACCTGACTATTTGCATTAGGGTTCCAACGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGATGT
125 ACC-GAC----GGCATTAGGGTTCCGACGATCGGGGGGGCC-G-GGGGGTGTGCGCACATGATGT
* * *
1227383 GTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATTCCTCATCAAACCTCGAGAACTCA
183 GCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
1227447 CACCCCCTTAAAGAGCATCTAAGATTTTACAAGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAA
248 CACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
1227512 AGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTCGACTTTTTAGCTGAATTTTTTT
313 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTT
* * *
1227577 GTGCATGCCAACAAAAATA-AAGGGATCACATCTACCAAGTTTGGGGCCAAAAC-CCATTCTGAA
378 GTGCATGCCAAAAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCA-TCCGAA
* *
1227640 AAAATTTTAAAAAATTCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAGAACGAGTCGT
441 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
1227705 CTTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATG
506 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATG
* **
1227770 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCCA
571 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
1227835 GCGCATCCCGTCTCTCTAGCCGGCGTAGTGCC-CCC-C-CGCCCGCCCGCCCGCTCGTTTCGTCA
636 GCGCATCCCGTCTCTCTAGCCGGCGTAGTGCCGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * * * * **
1227897 GTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGTGTTGTGGCAGC
701 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGATAGC
* * * ** * * *
1227962 AGGATCGGTAGCACACAGAGGGGGACCCGGTCGACCCCCGGCTTGCACATCCCACCCCTCTGGCC
766 AGGATCGGCAGCACGCA-AAGGGGA-CCGACCGATCCCTGGCTTGCGCATCCCACCCCTCTGG-C
* * * *
1228027 GGCGGAGCGCCCGTATGCTCATTTCGTGGGTTGACTTAGGCATACAGAGATCATTCCCAGTCTAA
828 GGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
1228092 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGGCCGAGGGTTGCAGCAGCACATGC-AGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTA-G
* * ** *
1228156 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGTCGGAGAACCTCATTGG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGCCGGAGAACCTGACCGA
* * ** *
1228221 CCGCATTGGGGTTCCGACGATCGGGGGAACCGGGGGGTGTGCGCACATGATATGCGATGGGTGCT
130 CGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
1228286 GGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCACTTAAA
195 CGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAA
*
1228351 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
1228416 TTTCAAATGGTCAAAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
325 TTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * * *
1228481 AAAAATACAAGGATCACGTGTACCAAGTTTGGGACAAAAACTCCATCCAAAAAAATTTTAAAAGA
390 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAA
*
1228546 TCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
455 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
1228611 TCACGTGAAGGCTTAAGTGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAG
520 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAG
1228676 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
585 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * **
1228741 TCTGGCCGGCGTAGTGCCCGCCCGCTCGCCTGCCCGCCCTTTCGTTTCGTCGGTTGGCTTAGGCA
650 TCTAGCCGGCGTAGTG-CCGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
1228806 TACGGAGTTCATTCCCAATCTAAGATTAGACCAGACTGAGGGTTGCGATAGCAGGATTGGCAACA
714 TACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGGCAGCA
* * *
1228871 CGTAAAGGGGACTCGACCGATCCCTGGCTTGCGCATCCCACCCCTCTGGTCGGCTGAGTGCCCAC
779 CGCAAAGGGGAC-CGACCGATCCCTGGCTTGCGCATCCCACCCCTCTGG-CGGCTGAGCGCCCGC
* * * *
1228936 ACGCTCCTTTCGTGTGTTGACTTAGGCATACACAGTTCATTCCCAGTCTCA
842 ACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
1228987 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
* * *
1229052 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGAACCTGACCGAC
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGCCGGAGAACCTGACCGAC
* *
1229116 GGCATTAGGGTTCCGACGATCGGGGGGGCCGGGCGGGTGTGCACACATGATGTGCGATGGTTGCT
131 GGCATTAGGGTTCCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
1229181 CATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCACTTAAA
195 CGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAA
1229246 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * * *
1229311 TTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCTGAATTTTTTTGCGCATTCCCAA
325 TTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * *
1229376 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAAAAA-TTTGAAAAA
390 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAA
** * * * * *
1229440 TCTTGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCACGAAACT
455 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
1229505 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAG
520 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAG
* *
1229570 AAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTC
585 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * * *
1229635 TCTGGCCGGC--ATTG-TGCCAGCTCGCCCACCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
650 TCTAGCCGGCGTAGTGCCGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* *
1229697 ACGGAGTTCATTCCCAATCTATGATCAGATCAGACCGAGGG
715 ACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGG
1229738 ATGTGGCAGC
Statistics
Matches: 2239, Mismatches: 256, Indels: 94
0.86 0.10 0.04
Matches are distributed among these distances:
873 1 0.00
874 100 0.04
875 1 0.00
877 3 0.00
880 3 0.00
881 1 0.00
882 1 0.00
884 10 0.00
885 188 0.08
886 96 0.04
887 49 0.02
888 1 0.00
890 78 0.03
891 52 0.02
892 416 0.19
893 32 0.01
894 289 0.13
895 415 0.19
896 92 0.04
897 2 0.00
898 2 0.00
900 122 0.05
901 3 0.00
903 3 0.00
904 272 0.12
905 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGGCACCATCGCCGGAGAACCTGACCGAC
GGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTC
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAAT
CCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTAGCCGGCGTAGTGCCGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGGCAGCACG
CAAAGGGGACCGACCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCGGCTGAGCGCCCGCACGC
TCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:1231473 original size:26 final size:26
Alignment explanation
Indices: 1231444--1231496 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1231434 AGTTGACTAG
*
1231444 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
1231470 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1231496 G
1 G
1231497 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1231492 original size:894 final size:898
Alignment explanation
Indices: 1229693--1234053 Score: 5822
Period size: 916 Copynumber: 4.8 Consensus size: 898
1229683 GTTGGCTTAG
* * * * * * *
1229693 GCATACGGAGTTCATTCCCAATCTATGATC-AGATCAGACCGAGGGATGTGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGATATCGGACCGAGGGTTGCGGTAGCACATGCTGG
* * * * *
1229757 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGCCGAGGCACCATCACCGGACCATCACCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCATCGGAG
* * ** * * *
1229822 AACCTGACCGAC-AGCGTTGGGGTTCCGATGATC-TGGGGGCCGGGGGGAGTGTGCGCACAAGAT
131 AACCTGACCGACGA-CATTGGGGTTCTGGCGATCGTGGGGGCCCGAGGG-GTGTGCGCACATGAT
* * * * *
1229885 GTGCGATGGGTGGTGGTACTTGCCCCTTATATCGGCCCCCTATCCCTAATCAAACCTCGAGAACT
194 GTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
1229950 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
1230015 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTTGAGTTTTTAGCT-AATTTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
* *
1230079 TTTGTGCATGCCAGCAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-
388 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
** *
1230143 AAAAATTTTAAAAAATGTTGAA-C-C-----G---CAAAAATCATGAAAAATAGAAAATGAGTCG
453 AAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
1230198 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAAT
518 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
1230263 GGCATTGGCATGCAGAAGTATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGACT
583 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
1230328 TGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCTGC-CCGCTCGTTTCATC-GTTGGCTTA
648 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCGTCGCTCGTTTCATCGGTTGGCTTA
*
1230391 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTACGCCAGTAGGATCGGC
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTACGCCAGCAGGATCGGC
* * *
1230456 AGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCTTCCCGTCCCTCTGGCCTGCTAAGCG
778 AGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCG
* *
1230521 CCTACACACTCATTTCATGAGTTGAC-TAGGCATATAGAGTTCATTCCAAGTCTAA
843 CCTGCACACTCATTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAA
* *
1230576 GCATACGGTGTTCATGCCCAGTCTAAGATCGA-ATCGGACCGAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGATATCGGACCGAGGGTTGCGGTAGCACATGCTGG
* *
1230640 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCATC-G-G
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCATCGGAG
* * * *
1230703 AACCTGACCGACGACATTAGGGTTCTGGCAATCGTGGGGGCCCGATGGGTTTGCGCACATGATGT
131 AACCTGACCGACGACATTGGGGTTCTGGCGATCGTGGGGGCCCGAGGGGTGTGCGCACATGATGT
*
1230768 GCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCA
196 GCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
1230833 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
1230898 TGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGTTGAATTTTTTG
326 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
1230963 GTGCATGCTAGAAAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
391 GTGCATGCCA-ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
1231028 AAATTTAAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
455 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
1231093 TTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
520 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
1231158 CATTGGCATGCAGAAGTATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTG
585 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
1231223 CGCATCCCATCTCTCTGGTCGACGTAGTGCCCGCCCG-GTCGCTCGTTTCATCGGTTGGCTTAGG
650 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCGTCGCTCGTTTCATCGGTTGGCTTAGG
* *
1231287 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTGCGCCAGTAGGATCGGCAG
715 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTACGCCAGCAGGATCGGCAG
* *
1231352 CACGTAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCTTCCCGCCCCTCTGGCCGGCTAAGCGCC
780 CACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCC
* *
1231417 TGCACACTCATTTCATGAGTTGAC-TAGGCATATAGAGTTCATTCCCAGTCTAA
845 TGCACACTCATTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAA
* * * *
1231470 GCATACGGTGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGTGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGATATCGGACCGAGGGTTGCGGTAGCACATGCTGG
* * * *
1231534 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCAAGGCACCATCGTCGGAGCATCATCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCATCGGAG
* * * *
1231599 AACCTGACCAACGACATTGGGGTTCTGGCAATCATGGGGGCCCGAGGGGTTTGCGCACATGATGT
131 AACCTGACCGACGACATTGGGGTTCTGGCGATCGTGGGGGCCCGAGGGGTGTGCGCACATGATGT
*
1231664 GCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCACCTATCCCTCATCAAACCTCGAGAACTCA
196 GCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
1231729 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
261 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1231794 TGGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
326 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** *
1231859 GTGCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTTCCGAAAA
391 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
1231924 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
456 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
** *
1231989 TGCCATGAAACTTCTTGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGAC
521 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
1232054 ATTGGTATGTAGAAATATAAAGGTGTGCCTAAACCCACC-ATCCACCCTATCGATCCACGACTTG
586 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA-CCACCCTATCGATCCACGGCTTG
* * * * *
1232118 CGCATCCCATCTCTCTAGCCAACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
650 CGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCG--CG-TCGCTCGTTTCATCGGTTG
* * * **
1232183 GCTTACGCATACGGAGTTCATTCCCAGTATAAGATCAGACCAAACCGAGGGTTACGATAGCAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTACGCCAGCAGGA
* * * * * * * * *
1232248 TCAGCAGGACGTAGAGGGGGAGCTGGCTGATCC-CAGACTTGCGCATCTCGCCCCTCTGGCGGGC
773 TCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * *
1232312 TAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAA
837 TAAGCGCCTGCACACTCATTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAA
1232374 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTATTCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C---G---A----TA-TC---G----GA-C---C
* * * *
1232439 AGAGGGTTGAGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGAGG
42 -GAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGG
*
1232504 CACCAT--------CA-C--CGGAGAACTTGACCGAC-AGCATTGGGGTTCTGGCGATCG-GAGG
106 CACCATCGCCGGAGCATCATCGGAGAACCTGACCGACGA-CATTGGGGTTCTGGCGATCGTG-GG
* * * *
1232556 GG-CCGGGGGGTGTGCACAAATGATGTGCGATGGGTGCTGGC-ACTTGGCCCTTATTTTGGCCCC
169 GGCCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GCTACTTGGCCCTTATATTGGCCCC
1232619 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-GTTTG
233 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
1232683 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGCGACACTTTTTTCAAATGGTCACAAAATCTTGTA
298 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
1232748 CAATTTGAGTTTTTAGTTGAATTTTTTTCTGCATGCCAACAAAAATACAAGGATCACGTCTGCCA
363 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* ** ** * * **
1232813 AGTTTGGAGTGAAAACTCCTTTTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTGTAAA
428 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAA
* * * * *
1232878 ATCGTG-AAAATAAAAAATGAGTCGTCTTGCCATGAAACTGCACATGAAGGCTTAAGGGACCATT
493 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
*
1232942 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCA
558 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
* * * *
1233007 CCTACCTCCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
623 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGC
* * * *
1233072 CCGCCTGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAATTCATTCCCAGTCTAAGATCAA
684 CCG-C-G-TCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * * * *
1233137 ACGAGA-CTGAGGGTTGCGGCAGCAGGATTGGCAGCACGCAGAGGGGGACCCGACAGATCCCCAG
746 ACCAAATC-GAGGGTTACGCCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCTCGG
* * * * * *
1233201 CTTGCGCATCCTGCCCCTCTGGCTGACTGAGCG-CT-CACACGCTCGTTTCATGCGTTGACTTAG
810 CTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCTGCACA--CTCATTTCATGAGTTGACTTAG
* * **
1233264 GCATACGGAGTTC-GTCCTCGGTCTAA
873 GCATACAGAGTTCATTCC-AAGTCTAA
* *
1233290 GCATACGGAGTTCATTCCCAGTCTAAGATTG-GATCGGACCGAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGATATCGGACCGAGGGTTGCGGTAGCACATGCTGG
* * * **
1233354 GCTCGGCCATGTACTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCC-GATGCATCGCCGGA
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCCGGA-GCATCATCGGA
* * * *
1233418 GAACCTGACCGACGGCCTTGGGGTTCCGGCGATCG-GAGGGG-CCG-GGGGTGTGCACACATGAT
130 GAACCTGACCGACGACATTGGGGTTCTGGCGATCGTG-GGGGCCCGAGGGGTGTGCGCACATGAT
* * *
1233480 GTGAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACT
194 GTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
1233545 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
1233610 AATGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
324 AATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * *
1233675 TTTGTGCATGCCAACAAAAGTACAAGGATCACATCTACCAAGTTTCGAGCCAAAACTCCTTCCAA
388 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
1233740 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCA
453 AAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * * *
1233805 TCTTGCCATGAAACTTGACGTGAAGGCTTAAGAGACCATTGCATGAATTTAGAAGCCATAAAAAT
518 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
1233870 GGTATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
583 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
1233935 TTCGCATCCTGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCGATTGGC
648 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--CGT-CGCTCGTTTCATCGGTTGGC
* * * *
1234000 TTAGGCATACGGAGTTCATTACCAGTATAAGTTCAGACCAGA-CTGAGGGTTACG
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATC-GAGGGTTACG
1234054 GTGGCACATG
Statistics
Matches: 3116, Mismatches: 276, Indels: 156
0.88 0.08 0.04
Matches are distributed among these distances:
881 230 0.07
882 62 0.02
883 128 0.04
884 2 0.00
885 1 0.00
890 64 0.02
891 1 0.00
893 207 0.07
894 308 0.10
895 254 0.08
896 261 0.08
898 3 0.00
899 86 0.03
900 111 0.04
901 83 0.03
902 151 0.05
903 318 0.10
904 52 0.02
905 2 0.00
906 1 0.00
911 1 0.00
913 1 0.00
914 3 0.00
915 9 0.00
916 361 0.12
917 192 0.06
918 114 0.04
919 39 0.01
921 2 0.00
922 2 0.00
925 2 0.00
926 1 0.00
929 1 0.00
930 63 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGATATCGGACCGAGGGTTGCGGTAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGCCGGAGCATCATCGGAG
AACCTGACCGACGACATTGGGGTTCTGGCGATCGTGGGGGCCCGAGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCGTCGCTCGTTTCATCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTACGCCAGCAGGATCGGCAGC
ACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTAAGCGCCT
GCACACTCATTTCATGAGTTGACTTAGGCATACAGAGTTCATTCCAAGTCTAA
Found at i:1232384 original size:26 final size:26
Alignment explanation
Indices: 1232348--1232426 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
1232338 GTTGACTTAG
1232348 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
1232374 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
1232400 GCATACGGAGTTCATTCCTATTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
1232426 G
1 G
1232427 ATCAGACCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:1233313 original size:26 final size:26
Alignment explanation
Indices: 1233264--1233316 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1233254 GTTGACTTAG
*
1233264 GCATACGGAGTTCGTCCTCGGTCTAA
1 GCATACGGAGTTCGTCCTCAGTCTAA
*
1233290 GCATACGGAGTTCATTCC-CAGTCTAA
1 GCATACGGAGTTC-GTCCTCAGTCTAA
1233316 G
1 G
1233317 ATTGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCGTCCTCAGTCTAA
Found at i:1234909 original size:26 final size:26
Alignment explanation
Indices: 1234879--1234931 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1234869 GTTGACTTAG
1234879 GCATACAGAGATCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
* *
1234905 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
1234931 G
1 G
1234932 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:1235809 original size:26 final size:26
Alignment explanation
Indices: 1235773--1235824 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
1235763 GTTGACTTAG
1235773 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1235799 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1235825 AATCAGATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1236710 original size:26 final size:26
Alignment explanation
Indices: 1236674--1236726 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1236664 GTTGACTTAG
* *
1236674 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1236700 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1236726 G
1 G
1236727 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1237602 original size:26 final size:26
Alignment explanation
Indices: 1237566--1237618 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1237556 GTTGACTTAG
*
1237566 GCATACGGAGTTCGTCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1237592 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1237618 G
1 G
1237619 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1238107 original size:903 final size:901
Alignment explanation
Indices: 1234004--1239226 Score: 6995
Period size: 903 Copynumber: 5.8 Consensus size: 901
1233994 ATTGGCTTAG
* * * * * * * * ***
1234004 GCATACGGAGTTCATTACCAGTATAAGTTCAGACCAGACTGAGGGTTACGGTGGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
1234069 CTCGGGCATGTGCTGGTGCCGTAATTTTCTTCAACGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCACC-GAGCATCGCCGGAGA
* * * * * * *
1234134 ACCTAACCGGCGGCATTGGCGTTCCGACGAT--AGGGGGCCGGGGGGTGTGCGCGCATGATGTAC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
*
1234197 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
1234262 CCCCCTTAAAGAGCATATAAGATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTCTGAAAAG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
1234327 GGGACACTTTTTTCAAATGGTCACAAAATCATGTACACTTTGACTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* **
1234392 GCATGCCAACAAAAATA-AAGGGATCACATCTACCAAGTTTGGGGCCAAAAC-CCATTCTGAAAA
390 GCATGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAA
* *
1234455 AATTTTAAAAAATCCCAAACCGC-AAAAAGTTTCAAAAATCATGAAAAATAGAGAACGAGTCGTC
453 AATTTTAAAAAATCCCAAACC-CTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
1234519 TTGCCATGAAACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
1234584 CATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
1234649 CGCATCCCGTCTCTCTAGCCGGCGTAGTAACCC-CCCGCCCGCCCGCCCGCTCGTTTCGTCAGTT
647 CGCATCCCGCCTCTCTGGCCGGCGTAGT-GCCCGCCCGCCCGCCCGCTCGCTCGTTTCATCGGTT
* * * *
1234713 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGTGTTAC-GTCAGCAG
711 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-GAACAGACTGAGGGTTGCGGT-AGCAG
* * * * * * * *
1234777 GATCGGCAGCACACAGATGGGGACCCGGCCGACCCCCGGCTTGCACATCCCGCCCCTTTGGCCGG
774 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGA
* * * * *
1234842 CTGAGCGCCCGCATGCTCATTTCATGGGTTGACTTAGGCATACAGAGATCATTCCCAGTCTAA
839 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
1234905 GCATATAGAGTTCATTCCCAGTCTAAGATCGGACCAGG-CCGAGGGTTAG-GGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTT-GCGACAGCACATGCTG
* **
1234968 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGAGG------CA-C---CATCGCCGGAG
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCACCGAGCATCGCCGGAG
* * *
1235023 AACCTGACCGACGGCATTGGGGTTCTGGCGATCGAGGGGGCCAGGGGTGGGGTGTGCGCACATGA
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCA---G-GGGGTGTGCGCACATGA
* *
1235088 TGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAAC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
1235153 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCTTTAAAGTGTTTG
255 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
1235218 AAATGGGGACACTTTTTTCAAATGGTCACACAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
1235283 TTTG-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTTCGA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
* * ** *
1235347 AAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTCAAAAATCGTGAAAAATA-AAAATTGAGTC
450 AAAAATTTTAAAAAATCCCAAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA-CGAGTC
* *
1235411 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGATCCA-TGTATGAATTTACAAGCTATAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA-CCATTGTATGAATTTACAAGCCATAAAA
* *
1235475 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGC
578 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * ** * **
1235540 CTTGTGCATCCCGCCTCTCTGGCCCGCGTAGTGCCCG-TTGCTCGCCCGC-CTGCTCGTTTTGTC
643 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC-GCTCGTTTCATC
* * * * * *
1235603 AGTTGGCTTAGGCAAACAGAGTTCATTCCTAGTCTAAGAT-TAGACTGGACTGAGGGTTACGGTA
707 GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGA-AC-AGACTGAGGGTTGCGGTA
* * * * * * *
1235667 GTAGGATCGGCAGCACGTAGAAGGGGACCCGGCC-AACCCTCGGCTTGCGCATCTCGCCCCTCTG
770 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC-CAGCTTGCGCATCCCGCCCCTCTG
* * *
1235731 GCCGACTGAGCGCCCGCACACTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
834 GCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
1235796 TAA
899 TAA
* * *
1235799 GCATACGGAGTTCATTCCCAGTCTAAAATCAGATCGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *
1235864 CTAGGGCATGTGCTGGTGCCGAATTTTTCTTCATCGAGGCACCATCCCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCACC-GAGCATCGCCGGAGA
*
1235929 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCAAGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTG
* * *
1235994 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCAAGAACTCAT
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1236059 ACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** *
1236124 -GCAAGCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAACTGAATTTTTTT
324 GGGGA-CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** *
1236187 GTGCATCCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGACCAT-CAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * **
1236250 AATTTTAAAAATTCCCAAACCACAAAAAATTTTC-AAAATCGTGAAAAACGGAAAACGAGTCGTC
453 AATTTTAAAAAATCCCAAACC-CTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
1236314 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
1236379 CATTGGCACGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCAATCGATCCACGGCTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
1236444 CGCATCCCGCCTCTCT-ACCTCGCGTAATGCCCGCCCGCCCGCTCG-TCCGCTCTTTTCATCGGT
647 CGCATCCCGCCTCTCTGGCC-GGCGTAGTGCCCGCCCGCCCGCCCGCT-CGCTCGTTTCATCGGT
* * * * * * *
1236507 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGATGGTTGCAGTAGCAA
710 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-GAACAGACTGAGGGTTGCGGTAGCAG
* * * * *
1236572 GATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGTGCATCCGGCCCCTCAGGCCGG
774 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGA
* * *
1236637 CTGAGGGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
839 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1236700 GCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
1236765 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C--G--T---CGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCACCGAGCATCGCCGGAGAA
* * * * *
1236820 CATGTCTGACGGCTTTGGGGTTCTGACGATCGGGGGGGCC-GGGGGTTGTGCGCACATGATGTGC
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGG-TGTGCGCACATGATGTGC
*
1236884 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
1236949 CCCCCTTGAAGAGCATTTTAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAACG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
1237014 AGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
1237079 GCATGCCAAAAAAAATACGAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAACA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * *
1237144 TTTAAAAAAATCCCGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
455 TTTTAAAAAATCCCAAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
1237209 CCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * *
1237274 TGGCACGTAAAAATATGAGGATGTGCCTAAACCCACCTACCTCTCTATCGATCCACGGCTTGTGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * *
1237339 ATTCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCTGCTTGCTCATTTCGTCGGTTGGCT
650 ATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCATCGGTTGGCT
** * * * * *
1237404 TAGGCATATGGAATTCATTCCCAGTCTAACATCGAACGGGACTGAGGGTTGCGGCAGCAGGATTG
715 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAAC-AGACTGAGGGTTGCGGTAGCAGGATCG
* * *
1237469 GCAGCACGTAGAGGGGGACCCGACCGATCCCCAGCTTGCGTATCCCGCCCCTCTGGCTGACTGAG
779 GCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAG
* * * * * *
1237534 CGCTCACACGCTCGTTTCATGCGTTGACTTAGGCATACGGAGTTCGTCCCCAGTCTAA
844 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1237592 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGACCAAAGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
1237657 CTCGGTCATGTACTGGTGCCGCATTTTTCTTCACCGAGGCACAATCACCGATGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCACCGA-GCATCGCCGGAGA
* * * *
1237722 ACCTGACCGACGGCCTTGGGGCTCCGACGATCGGGGGGGCCAGGGGGTGTGCACACATGATGTGA
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
*
1237787 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
1237852 CCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
1237917 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
1237982 GCATGCCAACAAAAATACAACGATCACGTCTACCAAGTTTGGGGCCGAAATTCCTTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
** * *
1238047 TTTTAAAAAATCCTGAACCCTAAAAAGTTTTAAAAATCGTGAAAAACAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCAAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
1238112 CCATGAAACTTCACGTGAAGGCTTATGGGACCATTGTATGAATTTACGAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
1238177 CGGCATGCAGCAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGC
585 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
1238242 ATCCTGCCTCTCTGGCCGACGTAGTGCCCGTCTGCCTGCCCGCAT-GCTCGTTTAATCGGTTGGC
650 ATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC-TCGCTCGTTTCATCGGTTGGC
* * * * * * * *
1238306 TTAGGCATACAGAGTTCATTCCTAGTCTATGATCGGACCGAATCGAGGGTCGCTGTAGTAGGATC
714 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACAGACT-GAGGGTTGCGGTAGCAGGATC
* * * * **
1238371 GGCAGCACGCAGAGGGGGACCC-AGTCGATCCTC-GACTTGCGCATCCTGCCCTTCTGGTTGACT
778 GGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCAG-CTTGCGCATCCCGCCCCTCTGGCCGACT
* * * *
1238434 AAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTGTAA
841 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1238495 GCATACGAAGTTCATTCCCAGTCCAAGATCAGATTGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * *
1238560 CTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGAAGCATCACTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCACCG-AGCATCGCCGGAGA
* * *
1238625 ACCTGACTGACGGCATTGGGGTTCCTG-CGAT------TG--TGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCC-GACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTG
*
1238681 CGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
1238746 ACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAC
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1238811 GGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
1238876 TGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
*
1238939 ATTTTAAAAAATCCCAAACCCTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCCCAAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
1239004 GCCATGAAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
1239069 TTGGCACGCAGAAATTTGAAGATGCGCCTTAACCCACCTACCACCCTATCGATCCATGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** ** * * *
1239134 CATCCCATCTCTCTGGTTGGCGTAGTACCCGTCCGCCTGCCCGCTCGCTCGTTTCATCGGTTGGC
649 CATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCATCGGTTGGC
*
1239199 TTAGGCATACGGAG-T--TTCCCAGTCTAAG
714 TTAGGCATACAGAGTTCATTCCCAGTCTAAG
1239227 CATGCGAAGT
Statistics
Matches: 3823, Mismatches: 426, Indels: 157
0.87 0.10 0.04
Matches are distributed among these distances:
888 5 0.00
889 177 0.05
890 117 0.03
891 55 0.01
892 485 0.13
893 281 0.07
894 304 0.08
895 472 0.12
896 207 0.05
897 1 0.00
898 2 0.00
899 5 0.00
900 195 0.05
901 434 0.11
902 201 0.05
903 823 0.22
904 8 0.00
905 50 0.01
906 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCACCGAGCATCGCCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
TTTAAAAAATCCCAAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCGTTTCATCGGTTGGCTT
AGGCATACAGAGTTCATTCCCAGTCTAAGATCGAACAGACTGAGGGTTGCGGTAGCAGGATCGGC
AGCACGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1239890 original size:732 final size:731
Alignment explanation
Indices: 1238445--1239946 Score: 2377
Period size: 732 Copynumber: 2.0 Consensus size: 731
1238435 AGCGCCCGTA
* * * *
1238445 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTGTAAGCATACGAAGTTCAT
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG-T--TTCCCAGTCTAAGCATACGAAGTTCAT
**
1238510 TCCCAGTCCAAGATCAGATTGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAAGTGCTG
63 TCCCAGTCCAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAAGTGCTG
* *
1238575 GTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGAAGCATCACTGGAGAACCTGACTGACGGCA
128 GTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGAAGCATCACCGGAGAACCTGACCGACGGCA
* * *
1238640 TTGGGGTTCCTGCGATTGTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCT
193 TTGGGGTTCCTGCGATCGTGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCT
*
1238705 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGAGAT
258 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
1238770 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAACGGGGACACTTTCTTCAAATGGTCA
323 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAACGGGGACACTTTCTTCAAATGGTCA
1238835 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAATACAAGGAT
388 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAATACAAGGAT
1238900 CACGTCTACCAAGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCCTAAAA
453 CACGTCTACCAAGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCCTAAAA
* * *
1238965 AGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTA
518 AGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTA
* *
1239030 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATTTGAAGATGCG
583 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACGCAGAAATATGAAGATGCG
* * * **
1239095 CCTTAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGTTGGCGTAGT
648 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGGCGTAGT
*
1239160 ACCCGTCCGC-CTGCCCGCT
713 ACCCGTCCGCTC-GCCCGCC
*
1239179 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTTCCCAGTCTAAGCATGCGAAGTTCATTCC
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTTCCCAGTCTAAGCATACGAAGTTCATTCC
* * * *
1239244 CAGTCCAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGTTGGTG
66 CAGTCCAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAAGTGCTGGTG
* * * *
1239309 CCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCCG-CGGCATT
131 CCGCATTTTTCTTCGTCGGGGCACCATCATCGAAGCATCACCGGAGAACCTGA-CCGACGGCATT
*
1239373 GGGGTT-CTGGCGATCG-GGGGGTGTGCGCACATGATGTGCGATTGCTGCTGGTACTTGGCCCTT
195 GGGGTTCCT-GCGATCGTGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTT
1239436 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
259 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * *
1239501 TTACAGGTTTGCAT-CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTGGTCA
324 TTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTAAAACGGGGACACTTTCTTCAAATGGTCA
* * *
1239565 CAAAATCTTGTACACTTTGAGTTTTTAGTTGAAT-TTTTTATTGCATGCCAACAAAAATACAAGG
388 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT-GTGCATGCCAA-AAAAATACAAGG
* * * *
1239629 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCACACAAATTTTAAAAAATCTCGAACCCTA
451 ATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCCTA
* * *
1239694 AAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTTGTCTTGCCATGAAACTTCCCGTGAAGGC
515 AAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGC
* *
1239759 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGCAATATGAAGAT
580 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACGCAGAAATATGAAGAT
* * *
1239824 GTGCCTAAACCCACCTTCCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGT
645 GCGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGGCGT
*
1239889 AGTGCCCGTCCGCTCGCCCGCC
710 AGTACCCGTCCGCTCGCCCGCC
* *
1239911 CGCTCATTTCATCGGTTGGCTTAGGCATACAGAGTT
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
1239947 CATTCCTAGT
Statistics
Matches: 706, Mismatches: 55, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
729 5 0.01
730 210 0.30
731 185 0.26
732 273 0.39
733 2 0.00
734 31 0.04
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (731 bp):
CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTTCCCAGTCTAAGCATACGAAGTTCATTCC
CAGTCCAAGATCAGATCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCAAGTGCTGGTG
CCGCATTTTTCTTCGTCGGGGCACCATCATCGAAGCATCACCGGAGAACCTGACCGACGGCATTG
GGGTTCCTGCGATCGTGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAACGGGGACACTTTCTTCAAATGGTCACAA
AATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAATACAAGGATCAC
GTCTACCAAGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCCTAAAAAGT
TTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACGCAGAAATATGAAGATGCGCCT
AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGGCGTAGTACC
CGTCCGCTCGCCCGCC
Found at i:1241020 original size:26 final size:26
Alignment explanation
Indices: 1240983--1241035 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1240973 GTTGACTTTG
* * *
1240983 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1241009 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1241035 G
1 G
1241036 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:1241235 original size:892 final size:887
Alignment explanation
Indices: 1239172--1241761 Score: 3770
Period size: 892 Copynumber: 2.9 Consensus size: 887
1239162 CCGTCCGCCT
* * * * *
1239172 GCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG-T-TTCCCAGTCTAAGCATGCGAA
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTATTCCCAGTCTAAGCATACGAA
* **
1239235 GTTCATTCCCAGTCCAAGATCGGATCAGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCAT
66 GTTCATTCCCAGTCCAAGATCGGATCGGACCGAGGGTTCAG-CAGCACATGCTGGGCTCGGGCAT
* * * *
1239300 GTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCC
130 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT-AGAGCATCGCCGGAGAACCTGACCG
* * *
1239365 GCGGCATTGGGGTTCTGGCGATCGGGGGGTGTGCGCACATGATGTGCGATTGCTGCTGGTACTTG
194 GCGGCATTGGGGTTCTGGCGATTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
1239430 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
259 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
*
1239495 GAGATTTTACAGGTTTGCAT-CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAT
324 GAGATTTTACAGGTTTGC-TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
1239559 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTATTGCATGCCAACAAAAATA
388 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-TTGCATGCCAACAAAAATA
* * *
1239624 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-ACACAAATTTTAAAAAATCTCGA
452 CAAGGA-CACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGA-AAAAATTTTAAAAAATCTTGA
* * * * *
1239688 AC-CCTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTTGTCTTGCCATGAAACTTCCCG
515 ACTGC-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
1239752 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGCAATA
579 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
*
1239817 TGAAGATGTGCCTAAACCCACCTTCCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
644 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
*
1239882 CCGGCGTAGTGCCCGTCCGC-T-CGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACAGAG
709 CCGGCGTAGTGCCCG-CC-CTTCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAG
* * * * * *
1239945 TTCA-TTCCTAGTCTATGATCGGACCGAATTGAGGTCGCTGTAGTAGGATCGATAGCACGCAGAG
772 TTCATTTCC-AGTCTAAGATCAGACCAAACTGAGGTCGCTGTAGCAGGATCGACAGCACGCAGAG
* * *
1240009 GAGGACTCAGCCGACCCCGACTTGCGCATCCCGCCCCACTGGCTGACTGAGC
836 GAGGACCCAGCCGACCCCGACTTGCGCATCACGCCCCACTGGCCGACTGAGC
* * * * * *
1240061 GCTCGTATGCTCATTTAGTGGGTTGACTTAGGCATACGGAGTTGATTCCCACTCTAAGCATACGA
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT-ATTCCCAGTCTAAGCATACGA
*
1240126 AGTTCATTCCCAGTCCAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
65 AGTTCATTCCCAGTCCAAGATCGGATCGGACCGAGGGTT-CAGCAGCACATGCTGGGCTCGGGCA
* * * *
1240191 TGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGAAGCATCGACGGAGAACCTGACC
129 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTAG-AGCATCGCCGGAGAACCTGACC
* * *
1240256 GACGGCATTGGGGTT-TCGACGATTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
193 GGCGGCATTGGGGTTCT-GGCGATTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
1240320 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACGCCCCCTTAAAGAGCAT
257 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * *
1240385 TTGAGATTTTACAAGTTTGCTGCCAGTGGCAATTAAAGTGTCTGAAATGGGGACACCTTTTTCAA
322 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
1240450 ATGGTCACCAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
387 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAAT
* *
1240515 ACAA-G-CACGTCTACCAAGCTTGGGGCTAAAA-TGGCTTCCGAAAAAATTTTAAAAAATCTTGA
451 ACAAGGACACGTCTACCAAGCTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAAAAATCTTGA
** *
1240577 ACTGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCGATGAAACTTCACGT
515 ACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * *
1240642 GAAGGCTTAAAGGG-CCATTGTATGAATTTACAAGCCATAGAAATGGCATTGGCACGTAGAAATA
580 GAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* *
1240706 TGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGTGCATCCCGCCTCTCTGG
644 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
* * * *
1240771 CCCGCGTAGTGCCCGCCCTTCCGCTCGCCCGCTCTTTTGATCGGTTGGCTTAGGCATACGGAGTT
709 CCGGCGTAGTGCCCGCCCTTCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTT
* * *
1240836 CATTTCCAGTTTAAGATCAGACCAAACTGACGGTTGC-GATAGCAGGATCGACAGCACGTAGAGG
774 CATTTCCAGTCTAAGATCAGACCAAACTGA-GGTCGCTG-TAGCAGGATCGACAGCACGCAGAGG
* * * * * * * *
1240900 GGGACCC-GACTGATCCCTGGCTTGTGCATCATGCCCCTCTGGCCGGCTGAGC
837 AGGACCCAG-CCGA-CCCCGACTTGCGCATCACGCCCCACTGGCCGACTGAGC
* *
1240952 GCCCGCACGCTCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCTAGTCTAAGCATACGA
1 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT-ATTCCCAGTCTAAGCATACGA
* * * *
1241017 AGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCA
65 AGTTCATTCCCAGTCCAAGATCGGATCGGACCGAGGGTT-CAGCAGCACATGCTGGGCTCGGGCA
*
1241082 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTAGAGCATCGCCAGAGAACCTGACC
129 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TAGAGCATCGCCGGAGAACCTGACC
*
1241147 GGCGGCATTGGGGTTCTGGCGATTGGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACT
193 GGCGGCATTGGGGTTCTGGCGATT-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
1241212 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAT
257 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
1241277 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAATGGGGACACTTTTTTCA
322 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCA
*
1241342 AATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAA
386 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTTGCATGCCAACAAAAA
* * *
1241407 TACAAGGATCTCGTCTACCTAGCTTGGGGCCAAAACTCCTTGCGAAAAAATTTTAAAAAATCTTG
450 TACAAGGA-CACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTG
1241472 AACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
514 AACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
1241537 TGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATA
579 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * *
1241602 TGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGG
644 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
* * * *
1241667 CTGGCATAGTGCCCGCCCGCCCGTCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
709 CCGGCGTAGT----GCCCGCCC-T---TCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCAT
* *
1241732 ATGGAGTTCATTCCCAGTCTAAGATCAGAC
766 ACGGAGTTCATTTCCAGTCTAAGATCAGAC
1241762 TAGACCGAGG
Statistics
Matches: 1520, Mismatches: 144, Indels: 59
0.88 0.08 0.03
Matches are distributed among these distances:
887 1 0.00
888 4 0.00
889 326 0.21
890 47 0.03
891 227 0.15
892 518 0.34
893 80 0.05
894 8 0.01
895 5 0.00
896 233 0.15
897 1 0.00
900 8 0.01
901 1 0.00
904 61 0.04
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (887 bp):
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTATTCCCAGTCTAAGCATACGAA
GTTCATTCCCAGTCCAAGATCGGATCGGACCGAGGGTTCAGCAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTAGAGCATCGCCGGAGAACCTGACCGGC
GGCATTGGGGTTCTGGCGATTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTGCATGCCAACAAAAATACAAG
GACACGTCTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACTGCA
AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGT
AGTGCCCGCCCTTCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTTCC
AGTCTAAGATCAGACCAAACTGAGGTCGCTGTAGCAGGATCGACAGCACGCAGAGGAGGACCCAG
CCGACCCCGACTTGCGCATCACGCCCCACTGGCCGACTGAGC
Found at i:1241684 original size:4 final size:4
Alignment explanation
Indices: 1241677--1241706 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
1241667 CTGGCATAGT
*
1241677 GCCC GCCC GCCC GTCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GCCC GC
1241707 TCGTTTCATC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.70, G:0.27, T:0.03
Consensus pattern (4 bp):
GCCC
Found at i:1242408 original size:727 final size:719
Alignment explanation
Indices: 1241017--1242417 Score: 2238
Period size: 727 Copynumber: 1.9 Consensus size: 719
1241007 AAGCATACGA
* *
1241017 AGTTCATTCCCAATCTAAGATCAGACCGGACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACAGCAGCAAATGCTGGGCTCGGGCA
*
1241082 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTAGAGCATCGCCAGAGAACCTGACC
66 TGTGCTGGTGCCGCAATTTTCTTCGTCGGGGCACCATCGCTAGAGCATCGCCAGAGAACCTGACC
* * * * *
1241147 GGCGGCATTGGGGTTCTGGCGATTGGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACT
131 GGCGACATTAGGGTTCCGACGATGGGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACT
* * *
1241212 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAT
196 TGGCCCATATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
1241277 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAATGGGGACACTTTTTTCA
261 TTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAATGGGGACACTTTTTTCA
* *
1241342 AATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAA
326 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * *
1241407 TACAAGGATCTCGTCTACCTAGCTTGGGGCCAAAACTCCTTGCGAAAAAATTTTAAAAAATCTTG
391 TACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATCTCG
*
1241472 AACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
456 AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
1241537 TGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATGGCATTGGCATGCAGAAATA
521 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATA
*
1241602 TGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGG
586 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGG
*
1241667 CTGGCATAGTGCCCGCCCGCCCGTCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
651 CCGGCATAGTGCCCGCCCGCCCGTCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
1241732 ATGG
716 ATGG
* * * **
1241736 AGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAAATTTTGGGCTCGGGCA
1 AGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACAGCAGCAAATGCTGGGCTCGGGCA
** * * * *
1241801 TGTGCTGGTGTTGCAATTTTCTTCGTCGGGGCACCATC-ATCGGAGCATCGTCGGAGAACCTGAC
66 TGTGCTGGTGCCGCAATTTTCTTCGTCGGGGCACCATCGCT-AGAGCATCGCCAGAGAACCTGAC
* * *
1241865 GGGCGACATTAGGGTTCCGACTATCAGGGGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGGT
130 CGGCGACATTAGGGTTCCGACGAT------GG--GGGGGGTGTGCGCACATGATGTGCGATGGGT
*
1241930 ACTGGTACTTGGCGCATATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTT
187 ACTGGTACTTGGCCCATATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTT
1241995 AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG-AAATGGGGACA
252 AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAATGGGGACA
1242059 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
317 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
*
1242124 CAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCCAAAACTTCATTCCGAAAAAAATTTT
382 CAACAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAAC-TCATTCCG-AAAAAATTTT
* *
1242188 AAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
445 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
1242253 GAAACTTCACGTGAAGGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
510 GAAACTTCACGTGAA-GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
1242317 CAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGCGCAT-
574 CAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATC
*
1242380 CCGTCTCTCTGGCCGGACATGTGTGCCCGCCCGCCCGT
639 CCGTCTCTCTGGCCGG-CAT-AGTGCCCGCCCGCCCGT
1242418 TCATTTCGAC
Statistics
Matches: 624, Mismatches: 44, Indels: 20
0.91 0.06 0.03
Matches are distributed among these distances:
718 1 0.00
719 131 0.21
725 32 0.05
726 118 0.19
727 335 0.54
728 7 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (719 bp):
AGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTACAGCAGCAAATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCAATTTTCTTCGTCGGGGCACCATCGCTAGAGCATCGCCAGAGAACCTGACC
GGCGACATTAGGGTTCCGACGATGGGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACT
TGGCCCATATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACTCATTCCGAAAAAATTTTAAAAAATCTCG
AACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGG
CCGGCATAGTGCCCGCCCGCCCGTCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
ATGG
Found at i:1245439 original size:901 final size:891
Alignment explanation
Indices: 1243260--1245796 Score: 3296
Period size: 901 Copynumber: 2.8 Consensus size: 891
1243250 GTTGGCTTAG
* * *
1243260 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGATAGCACATGCTGGG
1 GCATACAGAATTCATT-CCAGTCTAAGATCAGACTGGACCGAGGGTTACGATAGCACATGCTGGG
* * * * * *
1243325 CTCGAGCATGTGCTGGTGCCACATTTTTCCTCGCCAGGGCACCATCGCCAGAGCATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCG-C-GA-A
* * * * * * *
1243390 ACTTGATCGGCAGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTTTGCACACATGATGTGC
127 ACCTGA-CGG-GGAATTGGGGTTCCGGCGATC-GGGGGGCAGGGGGGTGTGCGCACATGATGTGC
*
1243455 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-TGAGGACTCAC
189 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT-AGAACTCAC
*
1243519 AGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
253 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
* *
1243584 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTA
318 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTG
* * *
1243649 AGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAA
383 AGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGACGAAAACTCCTTCCAAAAAA
* * * * *
1243713 AGTTGTAACAAATCTCGAACCGTAAAAAGTTTCCAAAATCATGAAAAATAAAAAACGAGTCGTCT
448 AGTT-TAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
1243778 TGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATTGTGTGAATTTACAAGGCATAAAAAATGG
512 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGG
* **
1243843 CATTGGCATGCACAAATATGAAGATGTGCCTAAACTGACCTACCACCCTATCGATCCACGACTTG
576 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * * * *
1243908 CGCATCTCGTCTCTTTAGCTGGCGTAGTGCCCGCCCGCCCGA-CCACTCGTTTCATCGGTTGGCT
641 CGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCG-CCGCCCGACCCGCTCGTTTCGTCGGTTGGCT
* ** **
1243972 TAGGCATACGGAG-T-TTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGTAGCAGGATTGG
705 TAGGCATACGGAGTTATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACAGTAGCAGGATCAG
* *** **
1244035 CAGCACGTAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCTGACTGAGT
770 CAGCACGCAGAGGGGGACCCAACCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCAACTGAGT
** * * * * *
1244100 GCCCGCATGCTCGTTTTATGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAA
835 GCCCGCACCCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCACTCTAA
* * * * ** * * * *
1244157 GCATACGGAGTTCATTCCAATCTAAGATTAGACCAGACCGAGGGTTACGACAGTAGATCCTGGGC
1 GCATACAGAATTCATTCCAGTCTAAGATCAGACTGGACCGAGGGTTACGATAGCACATGCTGGGC
* * * * * *
1244222 ACAGGCAAGTGCCGGTGCCGCATTTCTCTTCGTCGGGGCACCATCGTC-G-G-A-C-C---ATC-
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCGAAACCT
* * * *
1244278 GAC--GGTATTGGGGTTTCGACGATCGAGGTGGTCGAGGGGGGTGTGCGCACATGATGTGCGATG
131 GACGGGGAATTGGGGTTCCGGCGATCG-GG-GGGC-AGGGGGGTGTGCGCACATGATGTGCGATG
* * * * *
1244341 GGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATAAAACCTCAAGAACTCGCTCCCC
193 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCC
* * * *
1244406 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCTAGTAGCCATTAATGTGTCTGAAATGGAGA
258 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
1244471 CACTGTTTTCAAATGGTCACAAAATCTTGCACACTTTGAGTTTTTAGTTGATTTTTTTTGTGCAT
323 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGAGCAT
* * *
1244536 GCCAAAAAAAATACAGGGATCATGTCTACCAAGTTTGGGATGAAAAATCCTTCCAAAAAAAGTTT
388 GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGACGAAAACTCCTTCCAAAAAAAGTTT
*
1244601 AAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCGTGCCAT
453 AAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* **
1244666 GAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTTCC
518 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* ** * *
1244731 ATGCAGAAATATAAAGATAAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCC
583 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCC
*
1244796 CGTCTCTTTGGCCAGCGTAGTGCCCGACCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGG
648 CGTCTCTTTGGCCGGCGTAGTGCCCG-CCGCCCG---ACCCGCTCGTTTCGTCGGTTGGCTTAGG
*
1244861 CATACGGAGTTCATTCCCAGTCTAAGATCGAACTAGACCGAGGGTTACAGTAGCAGGATCAGCAG
709 CATACGGAGTT-ATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACAGTAGCAGGATCAGCAG
* * *
1244926 CATGCAGCGGGGGACCCAACCGATCCCCT-GCTTGCGCATCCCGCCCCTCTGGCCAACTGAGTGC
773 CACGCAGAGGGGGACCCAACCGAT-CCCTGGCTTGCGCATCCCACCCCTCTGGCCAACTGAGTGC
* * *
1244990 CTGCACCCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTACTCTAA
837 CCGCACCCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCACTCTAA
* * * *
1245045 GCATACAGAATTCTTTTCCAGTGTAAGATCAGACTGGACCGACGGTTGCGATAGCACATGCTGGG
1 GCATACAGAATTC-ATTCCAGTCTAAGATCAGACTGGACCGAGGGTTACGATAGCACATGCTGGG
* * *
1245110 CTTGGGCATGTGCTGCTGCCGCATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGTCGAAAA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCG-CG--AA
* * * * *
1245175 ACCTGACCGGGGGAATTAGGGTTGCGGCAATCGGGGGGCTGGGGGGTGTGCGCTCATGATGTGCG
127 ACCTGA-C-GGGGAATTGGGGTTCCGGCGATCGGGGGGCAGGGGGGTGTGCGCACATGATGTGCG
1245240 ATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATCAAACCTCTAGAACTCACAC
190 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACAC
* *
1245304 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
255 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
* ** * *
1245369 GGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGATTTTTTTTGGG
320 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGAG
* * *
1245434 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCG-AAACTCCTTCCAAAAAAA
385 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTT-GGGACGAAAACTCCTTCCAAAAAAA
* * * * *
1245498 TTTTAAAAAATCCCT-AACCGCAAAAAGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGTCTT
449 GTTTAAAAAAT-CTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * **
1245562 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCACAAATTTGGCA
513 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
1245627 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
578 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* *
1245692 CATCCCGTCTCTCTGGCCGGCGTAGT-------GCCCG-CCCGCTCGTTTCGTCGGTTAGCTTAG
643 CATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCGCCCGACCCGCTCGTTTCGTCGGTTGGCTTAG
* *
1245749 GCATACGGAGTTTATTCCCAGTCTAAAATC-ATACCGGACCGAGGGTTA
708 GCATACGGAG-TTATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTA
1245797 TGGCAGCACA
Statistics
Matches: 1421, Mismatches: 185, Indels: 76
0.84 0.11 0.05
Matches are distributed among these distances:
879 1 0.00
880 18 0.01
881 102 0.07
882 358 0.25
883 9 0.01
884 3 0.00
885 34 0.02
886 1 0.00
888 153 0.11
889 149 0.10
890 4 0.00
891 1 0.00
892 2 0.00
893 7 0.00
894 1 0.00
895 2 0.00
896 77 0.05
897 16 0.01
900 2 0.00
901 401 0.28
902 58 0.04
903 3 0.00
904 2 0.00
905 17 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
GCATACAGAATTCATTCCAGTCTAAGATCAGACTGGACCGAGGGTTACGATAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCGAAACCT
GACGGGGAATTGGGGTTCCGGCGATCGGGGGGCAGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGAGCATGCC
AAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGACGAAAACTCCTTCCAAAAAAAGTTTAAA
AAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
CTCTTTGGCCGGCGTAGTGCCCGCCGCCCGACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTACAGTAGCAGGATCAGCAGCACGCAGA
GGGGGACCCAACCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCAACTGAGTGCCCGCACCCT
CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCACTCTAA
Found at i:1247295 original size:26 final size:26
Alignment explanation
Indices: 1247256--1247305 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1247246 GTTGACTTAG
1247256 GCATACGGACTTCATTCCCAGTCTCA
1 GCATACGGACTTCATTCCCAGTCTCA
* *
1247282 GCATACGGAGTTCATTGCCAGTCT
1 GCATACGGACTTCATTCCCAGTCT
1247306 AAGATCGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTCA
Found at i:1250109 original size:26 final size:26
Alignment explanation
Indices: 1250073--1250125 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1250063 GTTGACTTAG
*
1250073 GCATACGGAGTTCGTCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1250099 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1250125 G
1 G
1250126 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1251511 original size:592 final size:592
Alignment explanation
Indices: 1250387--1251568 Score: 1646
Period size: 592 Copynumber: 2.0 Consensus size: 592
1250377 TTTACAGGTT
*
1250387 TGCTGCCAGTAGCCATTAAAGTGTCTAAAAACGGGGACACTTTCTTCAAATGGTCACAAATCTTG
1 TGCTGCCAGTAGCCATCAAAGTGTCTAAAAACGGGGACACTTTCTTCAAATGGTCACAAATCTTG
*
1250452 TACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAAAAAAAATTACAAGGATCACGTCTA
66 TACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAAAAAAAATTACAAGGATCACGTCTA
1250517 CCAAGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCCTAAAAAGTTTTAA
131 CCAAGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCCTAAAAAGTTTTAA
1250582 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCA
196 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCA
* *
1250647 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGCAATATGAAGATGCGCCTAAACC
261 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGCGCCTAAACC
*
1250712 CACTTACCACCCTATCGATCCACAGCTTGCACATCCCCCCTCTCTGGCCGACGTAGTGCCCATCC
326 CACCTACCACCCTATCGATCCACAGCTTGCACATCCCCCCTCTCTGGCCGACGTAGTGCCCATCC
* * * * * * *
1250777 GTCCGTCTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATGCACAGTTCATTCCTAGTCTATGATC
391 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACACAGTTCATTCCCAATCTATGATC
* * * * * *
1250842 GGACCGAACCTAGGGTCACGGCAGTAGGATTGCCAGCATGCAGAAGGGGACCCAACCGGTCCCCG
456 GGACAGAACCGAGGGTCACGGCAGTACGATCGCCAACATGCAGAAGGGGACCCAACCGATCCCCG
** * * * *
1250907 ACTTGTGCATCCCGCCCCACTTGCTGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
521 ACTTACGCATCCCACCCCACTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGG
1250972 CATACGG
586 CATACGG
* * *
1250979 TGCTGCCAGTAGCCATCAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
1 TGCTGCCAGTAGCCATCAAAGTGTCTAAAAACGGGGACACTTTCTTCAAATGGTCAC-AAATCTT
* * * * *
1251043 GTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCACAAAAAA-TACAAGGATTATGTTT
65 GTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAAAAAAAATTACAAGGATCACGTCT
* * *** *
1251107 ACCAAGTTTGGGGCTAAAACTCCTTCC-GAAAAATTTT-AAAAATCTTGAACGC-AAAAAGTTTT
130 ACCAAGTTT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCCTAAAAAG-TTT
* * *
1251169 TAAAAAATCGTGAAAAAATAG-AAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGTTTAATG
193 T-AAAAATCGTG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAA-G
*
1251233 GGA-CATTGTATGAATTTTACAAGCCAT-AAAATGGCAATTGGCACACAGAAATATAAAGATGTG
255 GGACCATTGTATGAA-TTTACAAGCCATAAAAATGGC-ATTGGCACACAGAAATATAAAGATGCG
* * **
1251296 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCC-CTCTGGCCGGTGTAG
318 CCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCACATCCC-CCCTCTCTGGCCGACGTAG
* ** * * *
1251360 TGCCCATCTGCCCGCCCGTTCGCTCGTTTCGTCTGTTGGCTTAGGCATATAGAGTTCATTCCCAA
382 TGCCCATCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACACAGTTCATTCCCAA
* * * * *
1251425 TCTATGATCGGATCAG-ATCGAGGGTCATGGCAGTACGATCGGCAACATGCAGAGGGGGACCCAG
447 TCTATGATCGGA-CAGAACCGAGGGTCACGGCAGTACGATCGCCAACATGCAGAAGGGGACCCAA
** * **
1251489 CCGATCCCCGACTTACGCATCCCACCCTTCTGGCCGGCTGAGTGCCCGCACGCTCATTTTGTGGG
511 CCGATCCCCGACTTACGCATCCCACCCCACTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGG
1251554 TTGACTTAGGCATAC
576 TTGACTTAGGCATAC
1251569 AGTGTTCGTT
Statistics
Matches: 518, Mismatches: 62, Indels: 20
0.86 0.10 0.03
Matches are distributed among these distances:
589 6 0.01
590 15 0.03
591 125 0.24
592 368 0.71
593 4 0.01
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (592 bp):
TGCTGCCAGTAGCCATCAAAGTGTCTAAAAACGGGGACACTTTCTTCAAATGGTCACAAATCTTG
TACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGCCAAAAAAAATTACAAGGATCACGTCTA
CCAAGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCCTAAAAAGTTTTAA
AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGCGCCTAAACC
CACCTACCACCCTATCGATCCACAGCTTGCACATCCCCCCTCTCTGGCCGACGTAGTGCCCATCC
GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACACAGTTCATTCCCAATCTATGATC
GGACAGAACCGAGGGTCACGGCAGTACGATCGCCAACATGCAGAAGGGGACCCAACCGATCCCCG
ACTTACGCATCCCACCCCACTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGG
CATACGG
Found at i:1251601 original size:26 final size:26
Alignment explanation
Indices: 1251563--1251615 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1251553 GTTGACTTAG
* * *
1251563 GCATACAGTGTTCGTTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1251589 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1251615 G
1 G
1251616 ATTGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1252994 original size:896 final size:898
Alignment explanation
Indices: 1250979--1253215 Score: 3185
Period size: 904 Copynumber: 2.5 Consensus size: 898
1250969 AGGCATACGG
*
1250979 TGCTGCCAGTAGCCATCAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
1 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
1251044 TACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCACAAAAAATACAAGGATTATGTTTAC
66 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTAC
* *
1251109 CAAGTTTGGGGCTAAAACTCCTTCC-GAAAAATTTT-AAAAATCTTGAA-CGCAAAAAGTTTTTA
131 CAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAG-TTTT-
* *
1251171 AAAAATCGTGAAAAAATAG-AAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGTTTAATGGG
194 AAAAATCGTG-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-ATGGG
* *
1251235 A-CATTGTATGAATTTTACAAGCCA-TAAAATGGCAATTGGCACACAGAAATATAAAGATGTGCC
257 ACCATTGTATGAA-TTTACAAGCCATTAAAATGGC-ATTGGCACGCAGAAATATGAAGATGTGCC
* * *
1251298 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCC-CTCTGGCCGGTGTAGTG
320 TAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCG-CCTCTCTGGCCGGCGTAGTG
* * * * * *
1251362 CCCATCTGCCCGCCCGTTCGCTCGTTTCGTCTGTTGGCTTAGGCATATAGAGTTCATTCCCAATC
384 CCCGTCTGCCTGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATC
*
1251427 TATGATCGGATCAGATCGAGGGTCATGGCAGTACGATCGGCAACATGCAGAGGGGGACCCAGCCG
449 TATGATCGGACCAGATCGAGGGTCATGGCAGTACGATCGGCAACATGCAGAGGGGGACCCAGCCG
* * * * *
1251492 ATCCCCGACTTACGCATCCCACCCTTCTGGCCGGCTGAGTGCCCGCACGCTCATTTTGTGGGTTG
514 ATCCCCGACTTACGCATCCCACCCCTCTGGCCGACTAAGCGCCCGCACGCTCATTTCGTGGGTTG
* * * * **
1251557 ACTTAGGCATACAGTGTTCGTTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
579 ACTTAGGCATACAGAGTTCGTTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCCAAGATCAGA
* * *
1251622 CTGGACCGAGGGTTACGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTTG
644 CTGGACCGAGGGTTACAGCAGCACATGCTAGGCTCGAGCAAGTGCTGGTGCCACATTTTTCTTCG
* * * *
1251687 TTGAGGCACCATCACCGGAGCATCGCCGGAGAACCTATCCAGTGGCATTGGGGTTCTGTAGATCG
709 TCGAGGCACCATCACCGAAGCATCGCCGGAGAACCTATCCAGCGGCATTGGGGTTCTCTAGAT--
* * *
1251752 GGGGGGCCAGGGGGGTGTGCTCACATGATCTGCGATGGGTTCTGGTACTTGGCTCTTATATTGGC
772 ---GGG-CAGGGGGGTGTGCGCACATGATCTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
1251817 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGT
833 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
1251882 T
898 T
1251883 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
1 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
1251948 TACACTTCGAGTTTTT-GACTGAATTTTTTTGTGCATGCCAACAAAAATACAATGATCATGTCTA
66 TACACTTCGAGTTTTTAG-CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTA
** * *
1252012 CCAAGTTTGGGGCCGAAACTCCTTCCAAAAAAATTTTAAAAAATCCTGAACCCTAAAAAGTTTTA
130 CCAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTA
*
1252077 AAAATCGTGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACC
195 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACC
* * * * *
1252142 ATTGTATGAATTTACGAGTCATTAAAATGGCATCGGCATGCAGCAATATGAAGATGTGCCTAAAC
260 ATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * *
1252207 CCACCTACCATCCTATCGATCCACGGCTTGCGCATCCTGCCTCTCTGGCCGACGTAGTGCCCGTC
325 CCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGTC
* * *
1252272 TGCCTGCCCGCACGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTATGAT
390 TGCCTGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTATGAT
* * * * *
1252337 TGGACC-GAATCGAGGGT--TGCTGTATTAGGATCGGCAGCATGCAGAGGGGGACCCAGCCGATC
455 CGGACCAG-ATCGAGGGTCATG--GCAGTACGATCGGCAACATGCAGAGGGGGACCCAGCCGATC
* * * ** * *
1252399 CTCGACTTGCGCATCCCGCCCCTCTGGTTGACTAAGCGCCCGTACGCTCGTTTCGTGGGTTGACT
517 CCCGACTTACGCATCCCACCCCTCTGGCCGACTAAGCGCCCGCACGCTCATTTCGTGGGTTGACT
* * * *
1252464 TAGGCATACGGAGTT-GATTCCCAGTGTAAGCATACGAAGTTCATTCCCAGTCCAAGATCATATT
582 TAGGCATACAGAGTTCG-TTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCCAAGATCAGACT
* * * *
1252528 GGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCAAGTGCTGGTGCCGCATTTTTCTTCGTC
646 GGACCGAGGGTTACAGCAGCACATGCTAGGCTCGAGCAAGTGCTGGTGCCACATTTTTCTTCGTC
* * *
1252593 GGGGCACCATCACCGAAGTATCGTCGGAGAACCTGA-CC-GACGGCATTGGGGTTC-CTACGAT-
711 GAGGCACCATCACCGAAGCATCGCCGGAGAACCT-ATCCAG-CGGCATTGGGGTTCTCTA-GATG
* * *
1252654 TG-TGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
773 GGCAGGGGGGTGTGCGCACATGATCTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
1252718 GTCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGTATTTGATATTTTACAGGTT
838 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
1252779 TGCTGCCAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
1 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
1252844 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTAC
66 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTAC
* ** *
1252909 CAATTTTGGGGCTAAAACGGCTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGA
131 CAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTAA
* *
1252974 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGCCTTAAGGGACCA
196 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCA
* * * *
1253039 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATTTGAAGATGCGCCTTAACC
261 TTGTATGAATTTACAAGCCATTAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* ** * *
1253104 CACCTACCAACCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGTCC
326 CACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGTCT
*
1253169 GCCTGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT
391 GCCTGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTT
1253216 TCCCAGTCTA
Statistics
Matches: 1193, Mismatches: 124, Indels: 40
0.88 0.09 0.03
Matches are distributed among these distances:
896 514 0.43
897 1 0.00
898 1 0.00
902 2 0.00
903 8 0.01
904 568 0.48
905 77 0.06
906 15 0.01
907 7 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (898 bp):
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTAC
CAAGTTTGGGGCTAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTAA
AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTATGGGACCA
TTGTATGAATTTACAAGCCATTAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
CACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGTCT
GCCTGCCCGCTCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTATGATC
GGACCAGATCGAGGGTCATGGCAGTACGATCGGCAACATGCAGAGGGGGACCCAGCCGATCCCCG
ACTTACGCATCCCACCCCTCTGGCCGACTAAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGG
CATACAGAGTTCGTTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCCAAGATCAGACTGGACC
GAGGGTTACAGCAGCACATGCTAGGCTCGAGCAAGTGCTGGTGCCACATTTTTCTTCGTCGAGGC
ACCATCACCGAAGCATCGCCGGAGAACCTATCCAGCGGCATTGGGGTTCTCTAGATGGGCAGGGG
GGTGTGCGCACATGATCTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
Found at i:1254402 original size:533 final size:532
Alignment explanation
Indices: 1253390--1254404 Score: 1692
Period size: 533 Copynumber: 1.9 Consensus size: 532
1253380 CTGGCGATCT
* *
1253390 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
1 GGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATGGGCCCCCTATCC
* *
1253455 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCATCCA
66 CTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCATCCA
*
1253520 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTGGTCACAAAATCTTGTACACTTT
131 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
*
1253585 GAGTTTTTAGTTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
196 GAGTTTTTAGATGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
*
1253650 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATCATG
261 GGGCCAAAACTCATTCCAAAAAAATTTTAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATCATG
* * *
1253715 AAAAACAGAAAACGAGTTGTCTTGCCATGAAACTTCCCGTGAAGGCTTAAGGGACCATTGTATGA
326 AAAAACAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** * * * *
1253780 ATTTACAAGCCATAAAAAAGGCATTGCCTTGCAGCAATATGAAGATGTGCCTAAACCCACCTTCC
391 ATTTACAAGCCATAAAAAAGGCATTGCCAGGCAGAAAGAGGAAGATGTGCCTAAACCCACCTACC
1253845 ACCCTATCGATCCACGGCTTGCGCATCGTCGGAGAACCTGACTGGTGGCATTGGGGTTCCGACGA
456 ACCCTATCGATCCACGGCTTGCGCATCGTCGGAGAACCTGACTGGTGGCATTGGGGTTCCGACGA
1253910 TCGAGGGGGCCG
521 TCGAGGGGGCCG
*
1253922 GGGGGGTTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTTGCCCTTATATGGGCCCCCTATC
1 GGGGGG-TGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATGGGCCCCCTATC
1253987 CCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC-TGC
65 CCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAT-C
*
1254051 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCT
129 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
1254116 TTGAGTTTTTAGATGATTTTTTTTGTGCATGCCAGCAAAAATACAAGGATCATGTCTACCAAGTT
194 TTGAGTTTTTAGATGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * * * *
1254181 TGGGGCCAAAACTTATTCCGAAAAAATTTTGAAAGAT-TCTGAACCGTAAAAAGTTTCCAAAATC
259 TGGGGCCAAAACTCATTCCAAAAAAATTTTAAAAAATCTC-GAACCCTAAAAAGTTTCAAAAATC
* *
1254245 GTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
323 ATGAAAAACAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
1254310 TGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAAGAGGAAGATGTGCCTAAACCCACCT
388 TGAATTTACAAGCCATAAAAAAGGCATTGCCAGGCAGAAAGAGGAAGATGTGCCTAAACCCACCT
*
1254375 ACCACCCTATCGATCCACGGTTTGCGCATC
453 ACCACCCTATCGATCCACGGCTTGCGCATC
1254405 CCGTATCTCT
Statistics
Matches: 447, Mismatches: 33, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
532 9 0.02
533 438 0.98
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (532 bp):
GGGGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATGGGCCCCCTATCC
CTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCATCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTT
GAGTTTTTAGATGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCATTCCAAAAAAATTTTAAAAAATCTCGAACCCTAAAAAGTTTCAAAAATCATG
AAAAACAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAAAGGCATTGCCAGGCAGAAAGAGGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCGTCGGAGAACCTGACTGGTGGCATTGGGGTTCCGACGA
TCGAGGGGGCCG
Found at i:1256274 original size:26 final size:26
Alignment explanation
Indices: 1256235--1256287 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1256225 GTTGACTTAG
* * *
1256235 GCATACGGAGTTCATTCCTACTCTAA
1 GCATACAGAATTCATTCCCACTCTAA
*
1256261 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCACTCTAA
1256287 G
1 G
1256288 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCACTCTAA
Found at i:1256698 original size:882 final size:887
Alignment explanation
Indices: 1254690--1256993 Score: 3024
Period size: 882 Copynumber: 2.6 Consensus size: 887
1254680 ATATTGGCCC
* *
1254690 CCTATCCCTCATCAAACCT-TGAGGACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
1 CCTATCCCTCATCAAACCTCT-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
1254754 TGCTACCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTG
65 TGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
1254819 TACACTTTGAGTTTTTAGCTGAATTTTTTTAAGCATGCCAAAAAAAATACAAGGATCATGTCTAC
130 TACACTTTGAGTTTTTAGCTGATTTTTTTTGAGCATGCCAAAAAAAATACAAGGATCATGTCTAC
* * * * * * *
1254884 CAAGTTTGGGGCCAAAACTCCTT-TCGAAAAAGTTGTAACAAATCTCGAACCGTAAAAAGTTTCC
195 CAAGTTTGGGGCCGAAACTCCTTCT-AAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCA
* * *
1254948 AAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACC
259 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * *
1255013 ATTGTGTGAATTTACAAGGCATAAAAATGGCATTGGCATGCACAAATATGAAGATGTGCCTAAAC
324 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * * * *
1255078 CGACCTACCACCCTATCGATCCACGACTTGCGCATCTCGTCTCTTTAGCTGGCATAGTGCCCGCC
389 CCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * * *
1255143 CGCCCGACCACTCGTTTCATCGGTTGGCTTAGGCATACGGAG-T-TTCCTAGTCTAAGATCGGAC
454 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTATTCCCAGTCTAAGATCGAAC
** * * * * ***
1255206 CAGACCGAGGGTTATGGTAGTAGGATTGGCAGCACGTAGAGGGGGACCCGGTCGATCCCTGGCTT
519 CAGACCGAGGGTTACAGCAGCAGGATTAGCAGCACGCAGAGGGGGACCCAACCGATCCCTGGCTT
* * * ** * *
1255271 GCGCATCCCACCCCTCTGGCTGACTGAGTGCCCGTATGCTCGTTTTATGGGTTGGCTTAGGCATA
584 GCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACCCTCGTTTCATGGGTTGACTTAGGCATA
* * * * *
1255336 CGGAGTTCATTCCCAGTGTAAGCATACGGAGTTCATTCCAATCTAAGATTAGACCAGACCGAGGG
649 CGGAGTTCATTCCCACTCTAAGCATACAGAATTCATTCCAATCTAAGATCAGACCAGACCGAGGG
* * * *
1255401 TTGTGGCAGCAGATCCTGGGCACAGGCAAGTGCTGGTGCCGCATTTCTCTTCGTCGGGGCACCAT
714 TTGCGACAGCACATCCTGGGCACAGGCAAGTGCTGCTGCCGCATTTCTCTTCGTCGGGGCACCAT
* * * * * *
1255466 CGTCGGACCATCGCCGAAGAACCTGACCGACGGTATTGGGGTTTCGACGATCGAGGTGGCCGAGG
779 CGTCAGACCATCGCCGAAAAACCTGACCGACGGAATTAGGGTTGCGACAATCGAGGTGGCCGAGG
*
1255531 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCCTATATTGGCCC
844 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGG--CTTGG---C------GG-CA
* * * *
1255587 CCTATCCCTCATAAAACCTCAAGAAATCACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
1 CCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * * * *
1255652 GCTTCTAGTAGCCATTAATGTGTCTGAAATGGAGACACTGTTTTCAAATGGTCACAAAATCTTGC
66 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
1255717 ACACTTTGAGTTTTTAGTTGATTTTTTTTGTGCATGCCAAAAAAAATACAGGGATCATGTCTACC
131 ACACTTTGAGTTTTTAGCTGATTTTTTTTGAGCATGCCAAAAAAAATACAAGGATCATGTCTACC
** * * *
1255782 AAGTTT-GGGATGAAAAATCCATCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAA
196 AAGTTTGGGGCCG-AAACTCCTTCTAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAA
* *
1255846 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAGGGCTTAAAGGACCA
260 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
1255911 TTGTATGAATTTAGAAGCCATAAAAATGGCATTGCCATGCAGAAATATGAAGATATGCCTAAACC
325 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* *
1255976 CACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGGCC
390 CACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CC
1256041 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
451 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT-ATTCCCAGTCTAAGATC
* * *
1256106 GAACTAGACCGAGGGTTACAGCAGCAGGATTAGCAGCATGCAGCGGGGGACCCAACCGATCCCCT
515 GAACCAGACCGAGGGTTACAGCAGCAGGATTAGCAGCACGCAGAGGGGGACCCAACCGAT-CCCT
* * *
1256171 -GCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCTGCACCCTCGTTTCGTGGGTTGACTTAG
579 GGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACCCTCGTTTCATGGGTTGACTTAG
* * **
1256235 GCATACGGAGTTCATTCCTACTCTAAGCATACAGAATTCATTCCCAGTCTAAGATCAGACTGGAC
644 GCATACGGAGTTCATTCCCACTCTAAGCATACAGAATTCATT-CCAATCTAAGATCAGACCAGAC
* *** * *
1256300 CGAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTGCTGCCGCATTTTTCTTCGTCGGGG
708 CGAGGGTTGCGACAGCACATCCTGGGCACAGGCAAGTGCTGCTGCCGCATTTCTCTTCGTCGGGG
* ** *
1256365 CACCATCGTCAGAGCATCGCCGAAAAACCTGACCGGGGGAATTAGGGTTGCGGCAATCG-GG-GG
773 CACCATCGTCAGACCATCGCCGAAAAACCTGACCGACGGAATTAGGGTTGCGACAATCGAGGTGG
* * *
1256428 GC-TGGGGGGTGTGCGCTCATGATGTGCGAT-GG-G-T-G-TT-G-GG-A
838 CCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCTTGGCGGCA
*
1256469 CCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTT
1 CCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
1256534 GCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGT
66 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
** * * * *
1256599 ACACTTCAATTTTTTAGCTGATTTTTTTTGGGCATGCCAACAAAAATACAAGGATCACGTCTACC
131 ACACTTTGAGTTTTTAGCTGATTTTTTTTGAGCATGCCAAAAAAAATACAAGGATCATGTCTACC
* *
1256664 AAGTTTGGGGCCGAAACTCCTTCTAAAAAAATTTTAAAAAATCCCT-AACCGCAAAAAGTTTCAA
196 AAGTTTGGGGCCGAAACTCCTTCTAAAAAAATTTTAAAAAAT-CTTGAACCGTAAAAAGTTTCAA
* *
1256728 AAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCA
260 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * **
1256793 TTGTATGAATTAACAAGCCACAAATTTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
325 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
1256858 CACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------
390 CACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* *
1256915 GCCCGCCCGCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTTATTCCCAGTCTAAAATC-ATA
455 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG-TTATTCCCAGTCTAAGATCGA-A
*
1256979 CCGGACCGAGGGTTA
518 CCAGACCGAGGGTTA
1256994 TGGCAGCACA
Statistics
Matches: 1237, Mismatches: 154, Indels: 59
0.85 0.11 0.04
Matches are distributed among these distances:
869 1 0.00
870 70 0.06
871 2 0.00
882 397 0.32
883 6 0.00
884 2 0.00
894 1 0.00
895 2 0.00
896 3 0.00
897 392 0.32
898 1 0.00
899 2 0.00
900 1 0.00
901 46 0.04
902 27 0.02
903 3 0.00
904 155 0.13
905 126 0.10
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (887 bp):
CCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTTGAGTTTTTAGCTGATTTTTTTTGAGCATGCCAAAAAAAATACAAGGATCATGTCTACC
AAGTTTGGGGCCGAAACTCCTTCTAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAA
AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTATTCCCAGTCTAAGATCGAACCA
GACCGAGGGTTACAGCAGCAGGATTAGCAGCACGCAGAGGGGGACCCAACCGATCCCTGGCTTGC
GCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACCCTCGTTTCATGGGTTGACTTAGGCATACG
GAGTTCATTCCCACTCTAAGCATACAGAATTCATTCCAATCTAAGATCAGACCAGACCGAGGGTT
GCGACAGCACATCCTGGGCACAGGCAAGTGCTGCTGCCGCATTTCTCTTCGTCGGGGCACCATCG
TCAGACCATCGCCGAAAAACCTGACCGACGGAATTAGGGTTGCGACAATCGAGGTGGCCGAGGGG
GGTGTGCGCACATGATGTGCGATGGGTGCTGGCTTGGCGGCA
Found at i:1258595 original size:707 final size:708
Alignment explanation
Indices: 1256471--1258906 Score: 4563
Period size: 708 Copynumber: 3.4 Consensus size: 708
1256461 TGTTGGGACC
*
1256471 TATCCCTCATCAAACCTCT-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTG
1 TATCCCTCATCAAACCT-TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATATGTTTG
* * * *
1256535 CTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTA
65 CTGCTAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * * *
1256600 CACTTCAATTTTTTAGCTGATTTTTTTTGGGCATGCCAACAAAAATACAAGGATCACGTCTACCA
130 CACTTCAAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCA
* * * * * *
1256665 AGTTTGGGGCCGAAACTCCTTCTAAAAAAATTTTAAAAAATCCCTAAC-CGCAAAAAGTTTCAAA
195 AGTTTGGGGCCAAAACTCTTTCTGAAAATATTTTAAAAAATCCCGAACGC-CAAGAAGTTTCAAA
*
1256729 AATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCAT
259 AATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
1256794 TGTATGAATTAACAAGCCACAAATTTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
324 TGTATGAATTAACAAGCCACAAATTTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
1256859 ACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
389 ACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
1256924 CTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTTATTCCCAGTCTAAAATCATACCGGACCGAG
454 CTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTTATTCCCAGTCTAAAATCATACCGGACCGAG
1256989 GGTTATGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCAGGGCACC
519 GGTTATGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCAGGGCACC
1257054 ATCACCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTAGGGTTCTGGCGATCGGGGGGGTTAG
584 ATCACCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTAGGGTTCTGGCGATCGGGGGGGTTAG
1257119 GCGGGGTGTGCTTACATGATGTGCGATAGCTGCTAGTACTTGGCCCTTATATTGGCCCCT
649 GCGGGGTGTGCTTACATGATGTGCGATAGCTGCTAGTACTTGGCCCTTATATTGGCCCCT
1257179 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATATGTTTGC
1 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATATGTTTGC
1257244 TGCTAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCTAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
1257309 ACTTCAAGTTTTTAGTTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAA
131 ACTTCAAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAA
1257374 GTTTGGGGCCAAAACTCTTTCTGAAAATATTTTAAAAAATCCCGAACGCCAAGAAGTTTCAAAAA
196 GTTTGGGGCCAAAACTCTTTCTGAAAATATTTTAAAAAATCCCGAACGCCAAGAAGTTTCAAAAA
1257439 TTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
261 TTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
1257504 TATGAATTAACAAGCCACAAATTTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
326 TATGAATTAACAAGCCACAAATTTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
1257569 CTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCT
391 CTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCT
*
1257634 CGTTTCGTCGGTTAGCTTAGGCATACGGAGTTTATTCCCAGTCTAAAATCATACCGGACTGAGGG
456 CGTTTCGTCGGTTAGCTTAGGCATACGGAGTTTATTCCCAGTCTAAAATCATACCGGACCGAGGG
1257699 TTATGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCAGGGCACCAT
521 TTATGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCAGGGCACCAT
1257764 CACCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTAGGGTTCTGGCGATCGGGGGGGTTAGGC
586 CACCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTAGGGTTCTGGCGATCGGGGGGGTTAGGC
1257829 GGGGTGTGCTTACATGATGTGCGATAGCTGCTAGTACTTGGCCCTTATATTGGCCCCT
651 GGGGTGTGCTTACATGATGTGCGATAGCTGCTAGTACTTGGCCCTTATATTGGCCCCT
1257887 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATATGTTTGC
1 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATATGTTTGC
1257952 TGCTAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCTAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
1258017 ACTTCAAGTTTTTAGTTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAA
131 ACTTCAAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAA
1258082 GTTTGGGGCCAAAACTCTTTCTGAAAATATTTTAAAAAATCCCGAACGCCAAGAAG-TTCAAAAA
196 GTTTGGGGCCAAAACTCTTTCTGAAAATATTTTAAAAAATCCCGAACGCCAAGAAGTTTCAAAAA
1258146 TTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
261 TTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
1258211 TATGAATTAACAAGCCACAAATTTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
326 TATGAATTAACAAGCCACAAATTTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
*
1258276 CTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCT
391 CTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCT
1258341 CGTTTCGTCGGTTAGCTTAGGCATACGGAGTTTATTCCCAGTCTAAAATCATACCGGACCGAGGG
456 CGTTTCGTCGGTTAGCTTAGGCATACGGAGTTTATTCCCAGTCTAAAATCATACCGGACCGAGGG
*
1258406 TTATGGTAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCAGGGCACCAT
521 TTATGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCAGGGCACCAT
* * *
1258471 CGCCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCTGGCGATCGGGGGGGTCAGGC
586 CACCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTAGGGTTCTGGCGATCGGGGGGGTTAGGC
*
1258536 GGGGTGTGCTTACATGATGTGCGATAGCTGCTAGTACTTGGCCCTTATATTGTCCCCT
651 GGGGTGTGCTTACATGATGTGCGATAGCTGCTAGTACTTGGCCCTTATATTGGCCCCT
1258594 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATATGTTTGC
1 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATATGTTTGC
1258659 TGCTAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
66 TGCTAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
*
1258724 ACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAA
131 ACTTCAAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAA
1258789 GTTTGGGGCCAAAACTCTTTCTGAAAATATTTTAAAAAATCCCGAACGCCAAGAAGTTTCAAAAA
196 GTTTGGGGCCAAAACTCTTTCTGAAAATATTTTAAAAAATCCCGAACGCCAAGAAGTTTCAAAAA
** *
1258854 TCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
261 TTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
1258907 GCGCATCCTG
Statistics
Matches: 1694, Mismatches: 31, Indels: 6
0.98 0.02 0.00
Matches are distributed among these distances:
707 699 0.41
708 994 0.59
709 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (708 bp):
TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATATGTTTGC
TGCTAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCAAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATAACGTCTACCAA
GTTTGGGGCCAAAACTCTTTCTGAAAATATTTTAAAAAATCCCGAACGCCAAGAAGTTTCAAAAA
TTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTAACAAGCCACAAATTTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCT
CGTTTCGTCGGTTAGCTTAGGCATACGGAGTTTATTCCCAGTCTAAAATCATACCGGACCGAGGG
TTATGGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCAGGGCACCAT
CACCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTAGGGTTCTGGCGATCGGGGGGGTTAGGC
GGGGTGTGCTTACATGATGTGCGATAGCTGCTAGTACTTGGCCCTTATATTGGCCCCT
Found at i:1264316 original size:26 final size:26
Alignment explanation
Indices: 1264280--1264332 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1264270 GTTGACTTAG
* *
1264280 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1264306 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1264332 G
1 G
1264333 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1265656 original size:881 final size:878
Alignment explanation
Indices: 1258993--1267337 Score: 9372
Period size: 899 Copynumber: 9.4 Consensus size: 878
1258983 CCCAATCTAA
* * * * * * *
1258993 GCATATGGAGTTCATTCCCAGTCTAAGATCGGAT-CGGACCGATGGTTGCGGTAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCCAGACTGAGGGTTGCAGCAGCACATGCTGG
* * * * * *
1259057 GCTCGGGCATGTGCTAGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCACCGAAG
66 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
** * *
1259122 AACCTGACCAACGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGTGGGTGTGCGCACATGATA
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGG-GGGTGTGCGCACATGATG
* * *
1259187 TGCGATGGGTGCTGGGACTTGGCCCTGATATTGATCCCCCTATCCCTCATCAAACCTCGAGAACT
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTG-GCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
1259252 CACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
1259317 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
1259382 TTGTGCATGCCAACAAAAATA-TAGGCATCACGTCTACCAAGTTTGGGGCCAAAAA-TCCTTCCG
388 TTGTGCATGCCAAAAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGG-CAAAAACTCCTTCCG
* * * *
1259445 AAAACATTTTAAAAAATCTCGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGATTC
451 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * * *
1259510 ATCTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGGATGAATTTACAAGCCATAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
1259575 TGGCATTGGCGCA-CAGAAATATGAAGATGTGCCCAAACCCACCTACCACACTATCGATCCACGG
581 TGGCATTGGC-AAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
1259639 CTTGCGCATCCCGTCTCTCTGGCCG--GT-GTAGTGCCCGCCCGCTCGCTCGCTCGTTTTGTTGG
645 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* ** * * *
1259701 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGGCC-GAACCGAGGGTTGCAGTAGT
710 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGTAGC
* ** * * * * *
1259765 AAGATC-AGCAGCACACAAAGGGGGACCCGATCTATCCCC-AGCTTGCGCATCACGCCCCTCTGG
774 AGGATCGA-CAGCATGCAGAGAGGGACCCGACCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGG
* * *
1259828 CCGGCTGAGCGCCCGCACG-CACGTTTCGTTGGTTGACTTAG
837 CCGGCTGAGCGCCCGCACGCCTCGTTTCGTGGGTTAACTTAG
* *
1259869 GCATACGGACTTCATTCCCAGTCTCAGCATACGGAGTTCATTGCCTGTCTAAGATCGGACTAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A-T--C---C----A---GAC----T
* * **
1259934 CGAGGGTTGCAGCAGCACATGTTGGGCTCGAGCATGTGCTGGTG-CGTATTTTTCTTCCCCGGGG
42 -GAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * *
1259998 CACCATCGTCGGAGCATCGCCGGAGAACTTGACCGACGTCATTAGGGTTTCGACGATCGAGGGGG
106 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGG
* * * ** *
1260063 GCGGGGGGGTGTGCGCACATTATGTGTGATGGGTGCTTTTACTTGACCCTTATATTGGCCCCCTA
170 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
1260128 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTG
235 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
1260193 CCAGTAGCCATTAAAGTGTTTAAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACAC
300 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
1260258 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACTAAGT
365 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
** * * *
1260323 TTGGCACCAAAACGCCTT-CGAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAAT
430 TTGGGGCAAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * *
1260387 CGTGAAATATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGT
494 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
1260452 ATGAATTTACAAGCCATAAAAATGGCATTGGCACA-TAGAAATATGAAGATGTGCCGAAACCCAC
559 ATGAATTTACAAGCCATAAAAATGGCATTGGCA-AGCAGAAATATGAAGATGTGCCTAAACCCAC
* *
1260516 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTA---GTGCCCG---
623 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGGTGCCCGCCC
* * * *
1260575 G-CCGCCTGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC
688 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC
* ** * * * * * * ** ** *
1260639 CGGATTGAGGGTTGTGGTAGCAGGATCAATAGCACGTAGAGGGGGACCCGATTGAT-CCTTAGCC
753 CAGACCGAGGGTTGCGGTAGCAGGATCGACAGCATGCAGAGAGGGACCCGACCGATCCCCGA-CT
* * * * * * * * *
1260703 TGCGCATCCCACCCCTCTGGTCGGCGGAGTGCCCGTATGCTAATTTCGTGGGTCGACTTAGGCAT
817 TGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC----CTCGT--TTCG---T-GG-GT
1260768 ATAGAGTTCATTCCAG
871 -TA-A---C-TT--AG
* * * *
1260784 TCTAAGCATACGGGGTTCATTCCCAGTCTAAGATTGGAT-CGGAATGAGGGTTGC-GACAGCACA
1 -----GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCCAGACTGAGGGTTGCAG-CAGCACA
** * * * *
1260847 TGCAAGGCTCGGGCAAGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCA---TC---GC-T--
60 TGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * * * *
1260903 --GGAGAACCTAATCGACGGCATTGGGCTTCCGACGATCGGGGGG-C-GGGGGGTGTGTGCACAT
125 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACAT
* * * *
1260964 GATGTGCGATGGGTGCTGGTACTTGGCCTTTATACTAGCCCCCTATCCCTCATCAAGCCTCGAGA
190 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
1261029 ACACACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
255 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
1261094 TGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGT
320 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
1261159 TTTTT-TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
385 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCC
* * *
1261223 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAGAATAGAAAATGAGT
450 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * *
1261288 CGTCTTGCCATGAAACTTCACATGAAGGCTGAAGGGACCATTGTGTGAATTTACAAGCCATAAAA
515 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * **
1261353 ATGGCATTGGCATGTAGAAACAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAA
580 ATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * * *
1261418 CTTGCGCATCCCATCTCTCTGGCCGACGTAGTGACTGCCCTCACGCCCTCTCACTCGTTTCATCG
645 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG
* * * *
1261483 GTTGGCTTAGGCATACGGAGTTCATTCCTTGTCTAAGATCACACCAGACTGAGGGTTACGGTAGC
709 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGC
** * * * *
1261548 AGGATCGGTAG--TGCAGAG-GGGACCCCGACCGAAT-CCTGGCTTGCTCATCTCGCCCCTCTGG
774 AGGATCGACAGCATGCAGAGAGGGA-CCCGACCG-ATCCCCGACTTGCGCATCCCGCCCCTCT-G
* ** * ** *
1261609 GTCC-GATGAGCGCAATGCACGCTTTATTTCGTGGGTTGACTTTATG
836 G-CCGGCTGAGCGC-CCGCACGCCTCGTTTCGTGGGTTAAC-TTA-G
* * *
1261655 GCATACGGAGTTCA-T-CCAGTCTAAAAGATCAGAT-CGGACTGAGGG-TGCAGTTAGCACATGC
1 GCATACGGAGTTCATTCCCAGTCT--AAGATCGGATCCAGACTGAGGGTTGCAG-CAGCACATGC
* * * * * * *
1261716 TGGGCACGTGGGCATGTGTTGGTACC-CTACATTTGCTTTCGTCCGGGGCACTCATCG-CGGGGC
63 TGGGCTC--GAGCATGTGCTGGTGCCGC-A-TTTTTC-TTCGT-CGGGGCAC-CATCGTCGGAGC
* * * * *
1261779 ACTCGCCCGGAGAACCTGACC-GCGGCATTAGGGTTCTGGCGATC-GAGGGCCCGGGGGGTGTGC
121 A-TCG-CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGC
* *
1261842 ACA-ATGATGTGGCGATTGGGTG-TGGTACTT-GCTCTTATATTGGCCCCTCTATTCCCTCCATA
184 GCACATGATGT-GCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-CTA-TCCCT-CAT-
* * *
1261904 CAAACCTCGAGAACTCAACACCTCTTTAAAGAGCATTTGAGATTTTATAAGGTTTGCTCGCCAGT
243 CAAACCTCGAGAACTC-ACACCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTTTGCT-GCCAGT
1261969 AGCCATTAAAGTGTTCTGAAATGGGGACACTTGTTTTGTCAAAATGGTCAACAAAAATCTTGTAC
305 AGCCATTAAAGTG-TCTGAAATGGGGACAC-T-TTTT-TC-AAATGGTC-AC-AAAATCTTGTAC
*
1262034 ACTTCGGAGTTGTTTAGCATGAATTTTTTGGTGCATCGCCAAAAAAAATACAAGGATCACGTCTA
363 ACTTC-GAGTT-TTTAGC-TGAATTTTTTTGTGCAT-GCCAAAAAAAATACAAGGATCACGTCT-
* * *
1262099 ACCAAGTTTGGGTC-AAAACTCCTTTCG-AAAAATTTTTAAAAATCCCGAACCGTAAAAAGTTTC
423 ACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTC
* *
1262162 -AAAATCAT-AAAAATAGTAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTTAAGGGA
488 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC-TTAAGGGA
* * * * * *
1262225 CCAATGTATGAATTTACAAGCCATGAAAATGGCATTGGCACGTAGAAAAAAGAAGATGTGCCTAA
552 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAA
* * * * ** *
1262290 ACCCACCTACTACCCTATCGATCCACAGCTTGCACATCCCATCTCTCTGGCCGGTGTATGTGCCT
617 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA-GTG-GT
* * * * *
1262355 GCCCGTCCACCCTCTAC-CTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTTCATTCCCTA-TC
680 GCCCGCCCGCCCGC-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG-TTCATT-CCTAGTC
* * * * *
1262418 TAAGATCACACTAGACTGAGGGTTGCGGTAGCAGGATCG-TAGCATGCAGAGGGGGACCCGACCG
742 TAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCATGCAGAGAGGGACCCGACCG
* * * * * * **
1262482 AT-CCTGGCTTGCTCATTCCCG-CCC-CT-GCCGGCTAAGCGCACGTAC-ATTCGTTTCGTGGGT
807 ATCCCCGACTTGCGCA-TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCCTCGTTTCGTGGGT
*
1262542 TGACTTAG
871 TAACTTAG
* *
1262550 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGACTGAGGGTTGCAGCAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCCAGACTGAGGGTTGCAGCAGCACATGCTGG
* * * * * * * *
1262614 GCTTGGGCATGTGCTGGTACCTCATTTTGCTTCATCGGGGCACCATCG-CGGGGCATCGCCAGAG
66 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* *
1262678 AACCTGATCGGCGGCATTGGGGTTCCGACGATCAGGGCGGCCGGAGGGGGTGTGCGCACATGATG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGG-GGGGGTGTGCGCACATGATG
*
1262743 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCGT-GAGAACT
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACT
1262807 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
1262872 AATGGGGACACTTTTTTCAAATGGTCCCAAACTCTTGTACACTTCGAGTTTTTAGCGGAATATTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
1262937 TTGTTCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCTAAAA-TAGCTTCCGA
388 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACT-CCTTCCGA
* * *
1263001 AAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCG
452 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
1263066 TCTTGCCATGAAACTTCACGT-AAGGCTTAAGGGACCATTGAATGAATTTACAAGCCATAAAAGT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
1263130 GGCATT-GCATGCAGAAATATGAAGATGT-ACTAAACCCACGTACCACCCTATCGATCCACGGCA
582 GGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * **
1263193 TGCACATCCTGTCTCTCTGGCCGACGTA---G-GCCCGCCCG-CCGCTCGCTCCTTTCGTCAATT
647 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* ** *
1263253 GGTTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAAG
712 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGG
* ** *
1263318 ATCGACAGCACGCAGAGAGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGAC
777 ATCGACAGCATGCAGAGAGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
1263383 TGAGCGCCCGCATG-GTCGTTTCGTGGGTTGACTTAG
842 TGAGCGCCCGCACGCCTCGTTTCGTGGGTTAACTTAG
* * * ** * *
1263419 GCATGCGGAGTTCATTCCCAGTCTAAGATCAGA-CAAGACCAAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCCAGACTGAGGGTTGCAGCAGCACATGCTGG
* ** * *
1263483 GCTC-AGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACAATCGTCGGAGCATCGCAGGA
66 GCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * * * *
1263547 GAACCTGATCGACGACATTGGGGTTCTGACGATCGGGGGGGCC-GGGAGGTGTGTG--CAT-ATG
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATG
*
1263608 T----T--GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTCATCAAACCTTGAGAACT
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC-TCATCAAACCTCGAGAACT
* * *
1263667 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTAA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
** * *
1263731 AATGGTTACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
1263796 TTGTGCATGCCAAAAAAAAACACAAGGATCACATCTACCAAGTTTGGGGCTAAAACTCCTTCCGA
388 TTGTGCATGCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGA
*
1263861 AAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
452 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
1263926 TGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
1263991 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCA
582 GGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
1264056 TGCGCATCCCGTCTCTCTGGCCGGCGTA---GT----GCCCGCCCGTCTGCTCATTTCGTTGGTT
647 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* ** * *
1264114 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGTAGTAGG
712 GGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGG
* ** * * * * * * * *
1264179 ATTGGTAGCACGCAGAGTGGGACCTGATCGATCCCCGACTTGCACATCCCGCCTCTCTGGTCGAC
777 ATCGACAGCATGCAGAGAGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
1264244 TGAGCGCCCGCAAG-CTCATTTCGTGGGTTGACTTAG
842 TGAGCGCCCGCACGCCTCGTTTCGTGGGTTAACTTAG
* * * * * * * *
1264280 GCATACGGAGTTCATTGCCAGTCTAAGCATACAGAGTTCATTCCCAGTCT-AAGATCGGATC-GG
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A-T-CCAGACTGAGGGTTGCAGCAGC
* * * ** * * *
1264343 AC-TG-AGGGTTGCGGCAGAACATGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGA
57 ACATGCTGGGCT-C-G-AGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGA
** * *
1264406 GCATCGTAGGAGAACCTGACCAGTGGCATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTG
119 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTGTG
* *
1264470 CGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAAC
183 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
1264535 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGACTTTACAGGTTTGCTGCCAGTAGCCATTA
248 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
*
1264600 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
313 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * * * *
1264665 CTGAATTTTTTTATGCAAGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAAC
378 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAC
* *
1264730 TCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
443 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
*
1264795 AACGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
508 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * * * *
1264860 CATAAAAATGTCATTGGCAAGCAGAAATATGAAGAGGTGCCGAAACCCACCAACCACCGTATCGC
573 CATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
1264925 TCCATGGCTTGTGTATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGCCCGCCCGC
638 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG---G-T-GCCCGCCCGCCCGCCCGC
* ** * * *
1264990 TCGTTTCGCCGGTTGGCTTAGGTGTACGGAGTTCATTACTAGTATAAGATCGGACCAGACCG-GG
698 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGG
* * *
1265054 AGTTGCGGTAGCAGGATCGGCAGCATACAGAGAGGGACCCGACCGATCCCCGACATGCGCATCCC
763 -GTTGCGGTAGCAGGATCGACAGCATGCAGAGAGGGACCCGACCGATCCCCGACTTGCGCATCCC
* * *
1265119 ACCCCTCTGGCCGGCTGAGCGCCCGCACGCCT-GTTTCGTAGGTTAATTTAG
827 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCCTCGTTTCGTGGGTTAACTTAG
* * *
1265170 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCCA-ACTGAGGGTTGCAACAGGACATGCTGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCCAGACTGAGGGTTGCAGCAGCACATGCTGG
* * *
1265234 GCCCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAG
66 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* *
1265299 AACCTGATCGGCGACATTGGGGTTCCGACGATCTGGGGGGCCGGGGGGGTGTGCGCACATGATGT
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
1265364 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1265429 C-TCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTTGAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAA
*
1265493 AT-GGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACGTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
1265556 TATGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAAAATCATTCCAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-AAAAACTCCTTCCGAA
* * * *
1265621 AAAATTTTTAAAAATCTCGAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
453 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
1265686 CTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
1265751 GCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTT
583 GCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * ** *
1265816 GTGCATCCCGTCTCTCTGGTCGGCGTA---GTGCCCGTTCGCCCGCCCGCTCGTTTCGTCGATTG
648 GCGCATCCCGTCTCTCTGGCCGACGTAGTGGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** * * *
1265878 GCTTAGGCGTACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGTA-AGTTGTGGCAGCAGG
713 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCG-AGGGTTGCGGTAGCAGG
* * * * * *
1265942 ATCGACAGCATTCAGA-AGGGGACCCGACTGATGCCCGACATGCGCATCCCGTCTCC-ATGGCCG
777 ATCGACAGCATGCAGAGA-GGGACCCGACCGATCCCCGACTTGCGCATCCCG-CCCCTCTGGCCG
* * *
1266005 GCTGAGCGCCCGCAC-ACTTGTTTCGTGGGTTAATTTAG
840 GCTGAGCGCCCGCACGCCTCGTTTCGTGGGTTAACTTAG
1266043 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCGTCTAAGATCAGACTGGACC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A------TC------CAGACT-GA--
* * * *
1266108 GGGGGTTACGGCAGGACATGCTGGGC-CTGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG
44 --GGGTTGCAGCAGCACATGCTGGGCTC-GAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
** * * * * *
1266172 CACCATCGTTAGAGCATCGCTGGAGAACTTGACCGGCTGCATTGGGGTTCCGGCGATCTAGGGGG
106 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG
* *
1266237 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGCCTTTATATTGGCCCCCTA
170 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
1266302 TCCCTCATCAAACCTTGAGAACTCACTCCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTG
235 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
1266367 CCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACAC
300 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
1266432 TTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTGCCAAGT
365 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * * *
1266497 TTCGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAATGTTTCAAAAATC
430 TTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * **
1266562 ATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTAAA
495 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * *
1266627 TGAATTTACAACCCATAAAAATGGCATTGGCACA-CAAAAATATGAAGATGTGCCTAAACCTAGC
560 TGAATTTACAAGCCATAAAAATGGCATTGGCA-AGCAGAAATATGAAGATGTGCCTAAACCCACC
*
1266691 TATCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA---GT----GCCCG
624 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGGTGCCCGCCCG
** * * * **
1266749 CTTGCCCGCTCATTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
689 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
* * * * * **
1266814 CGACCGAGGGTTGCAGTAGCAGGATCAACAGCATGCAGAGGGGGACTCGGTCGATCCCC-AGCTT
754 AGACCGAGGGTTGCGGTAGCAGGATCGACAGCATGCAGAGAGGGACCCGACCGATCCCCGA-CTT
** * * * *
1266878 -CTGCATCCCGCCCCTCTGGCCTACTGAGCACCTGCACG-CTCATTTCGTGGGTTGACTTAG
818 GC-GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCCTCGTTTCGTGGGTTAACTTAG
*
1266938 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGGTCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A-T-CCAGACT--GA--GGGT-----
* * *
1267003 TGAGGGTTCCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAATTTTCTTCGTCGGGG
48 T----G--CAG-CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
** * *
1267068 CACCATCGTTAGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGTG
106 CACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-G
* * *
1267133 CCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTTTGGGCCCCTA
170 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
1267198 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
235 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
1267263 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
300 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
1267328 TTCGAGTTTT
365 TTCGAGTTTT
1267338 GCCAGGAAAC
Statistics
Matches: 6453, Mismatches: 738, Indels: 536
0.84 0.10 0.07
Matches are distributed among these distances:
859 162 0.03
860 154 0.02
861 233 0.04
862 24 0.00
863 59 0.01
864 11 0.00
865 51 0.01
866 107 0.02
867 24 0.00
868 29 0.00
869 138 0.02
870 154 0.02
871 14 0.00
872 11 0.00
873 265 0.04
874 60 0.01
875 90 0.01
876 44 0.01
877 49 0.01
878 294 0.05
879 165 0.03
880 365 0.06
881 580 0.09
882 112 0.02
883 50 0.01
884 101 0.02
885 40 0.01
886 44 0.01
887 70 0.01
888 151 0.02
889 32 0.00
890 227 0.04
891 48 0.01
892 33 0.01
893 25 0.00
894 49 0.01
895 401 0.06
896 306 0.05
897 45 0.01
898 224 0.03
899 738 0.11
900 281 0.04
901 168 0.03
902 145 0.02
903 35 0.01
904 4 0.00
905 1 0.00
906 2 0.00
907 1 0.00
908 1 0.00
909 1 0.00
912 2 0.00
913 3 0.00
915 2 0.00
916 1 0.00
917 1 0.00
919 2 0.00
920 24 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (878 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCCAGACTGAGGGTTGCAGCAGCACATGCTGG
GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCG
ACAGCATGCAGAGAGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCCTCGTTTCGTGGGTTAACTTAG
Found at i:1266079 original size:26 final size:25
Alignment explanation
Indices: 1266043--1266094 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
1266033 GTTAATTTAG
1266043 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCC-GTCTAA
1266069 GCATACGGAGTTCATTCCCGTCTAA
1 GCATACGGAGTTCATTCCCGTCTAA
1266094 G
1 G
1266095 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCGTCTAA
Found at i:1266974 original size:26 final size:26
Alignment explanation
Indices: 1266938--1266990 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1266928 GTTGACTTAG
*
1266938 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1266964 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1266990 G
1 G
1266991 ATCGGGTCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1269588 original size:876 final size:874
Alignment explanation
Indices: 1267336--1275134 Score: 9502
Period size: 876 Copynumber: 8.9 Consensus size: 874
1267326 ACTTCGAGTT
*
1267336 TTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
1267401 CATTGGCACGTAGAAATATGATGATGTGCATAAACCCACCTAGCACCCTATCGATCCACGGCTTG
66 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
1267466 CGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCGCCTG---TCCGCTCGTTTCGTTGGTTGG
131 TGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCAGCCCGCCGCTCGTTTCGTCGGTTGG
** * * * * *
1267524 CTTAGGCATACAAAATTCATTCCCAGTCTAAGATCGGACCAGA-TCGAGGGTT-TTGATAGCATG
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCTG-TAGCAGG
* * * * * *
1267587 ATCGGCAGGACGCAGAAGGGGACCCAGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGC
259 ATCGGTAGCACGCAGAGGGGGACCC-GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
1267652 TGAGCACCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAGGAT
323 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * * *
1267717 C-GAATCAGACCGGGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CTGTATTTT
388 CAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC-GCATTTT
** * * * *
1267780 TCTTCACCGAGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGA
451 TCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA
* ** * *
1267845 CGCTCGGGGGGGTTGGAGGGGTGTGCGCACATGATGTGCAATGGGTGCTAGTACTTGGCCCTTAT
516 CGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
1267910 ATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTT
580 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * *
1267975 ACAAGTTTGCTGCCAGTAGCCACTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAA
645 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * *
1268040 AATCTTGTACACTTCTAGTTTTTTTGCTGAATTTTTTTGTCCATGCCAAAAAAAATACAAGGATC
710 AATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * *
1268105 -CAGTCTACCAAGTTTGGGGCCCAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACTGCAAA
774 AC-GTCTACCAAGTTTGGGGCCAAAAATCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAA
* * * *
1268169 AAGTTT-TGAAAATCGTGAAAAATAGAAAACAAGTTGTC
837 AAGTTTCAG-AAATCATGAAAAATAGAAAACGAGTCGTC
* * * * *
1268207 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATAAATTCACAAGCCATACAAATTG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
1268272 CATTGGCATGCAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTGTCGATCCACTGCTTA
66 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
1268337 TGCATCTCGTCTCTCTGGCCGACGTAGTGCCTG--C-CC-G--C-CCGCTCGTTTCCTCGGTTGG
131 TGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCAGCCCGCCGCTCGTTTCGTCGGTTGG
* ** * * * * *
1268395 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGTAT
196 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCTGTAGCAGGAT
** * * * * *
1268460 CCATAGCACGTAGAGGGGGACCCAGCCGATCCCCTGCTTGCGCATCCCGCCCCTCTAGTCGACTG
261 CGGTAGCACGCAGAGGGGGACCC-GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
1268525 AGCACCCGCACGCTTC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
325 AGCGCCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
** * * * * * *
1268589 AGACCCAATCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCGTATTTTTCT
389 AGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCT
* * * * *
1268654 TCGTCGGGGCACCATCACCGGAGCATCGTCGAAGAACCTGACCTGCGGCATTGGGGTTCCGGCGA
454 TCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
*
1268719 TCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATT
519 TCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
1268784 GGCCCCTTATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACA
583 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
1268849 GGTTTGCTGCCAGTAGCCATTAAAGTGTCGGAAATGGGGACACTTTTTCCAAATGGTCACAAAAT
648 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
1268914 CTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCT
713 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * *
1268979 CTACCAAGTTTGGAGCCAAAAATTCTTCCCAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
778 CTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
*
1269044 CAGAAATCGTGAAAAATAGAAAACGAGTCGTC
843 CAGAAATCATGAAAAATAGAAAACGAGTCGTC
**
1269076 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAT
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
1269141 CATTGGTACACAGAAATATGCAGATGTCCCTAAACCCACCTACCACCCTAAT-GATCAATGGCTT
66 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGCTT
* * *
1269205 GTGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGGCCGCCAGCCCGCCTGCTCGTTTCGTCAGTT
130 GTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCAGCCCGCC-GCTCGTTTCGTCGGTT
* ** * *
1269270 GGCTTAGGCATA-TGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCTGCAGCAGG
194 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCTGTAGCAGG
* *** * * * * *
1269334 ATCGGTAGCATGCAGAAAAGGACCCAGTCGATCCCCAGCTTGCACATCTCGCCCGTCTGGCCGGC
259 ATCGGTAGCACGCAGAGGGGGACCC-GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
1269399 TGAGTGCCTGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
323 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** *
1269464 CAGACCGGACCGAAGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
388 CAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTC
* * * * * *
1269529 TTTGACGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCG
453 TTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* *
1269594 ATCGGGGTGGCCGGGCGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
518 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
1269659 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
583 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
1269724 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC-TTTTTCAAATGGTCACAAAAT
648 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
1269788 CTTATACACTTCGAGTTTTTAGCTGAATTATTTTGTGCATGCCAACAAAAATACAAGGATCACGT
713 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * * * *
1269853 CTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAATTTTAAAAAATCTCGAATCGTAAAAAGTTT
778 CTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
*
1269918 CAAAAATCATGAAAAATAGAAAACGAGTCGTC
843 CAGAAATCATGAAAAATAGAAAACGAGTCGTC
1269950 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
1270015 CATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
66 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
1270080 CGCATCTCGTCTCTCTGGCCGACGTAGTGCCCCCCCGCCCA-CCCGTACGCTCATTTCGTGGGTT
131 TGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCAGCCCG-CCGCTCGTTTCGTCGGTT
* * * * ** * *
1270144 GACTTAGGCATACGGAGTTCATTCCCTGTCTAAGAT-TGAATCGGACCAAGGGTTGCAGTAGTAG
194 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACTGAGGGTTGCTGTAGCAG
** *
1270208 GATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTACCCCTTTGGCCGG
258 GATCGGTAGCACGCAGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
1270273 CTGAGCACCTGCACACTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
322 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-
**
1270338 ATACAGAGTTCATTCCCAATTTAAGGTCGGACCAGACCAAGGGTTGCGATAGCACATGCTGGGCT
386 AT-C--AG---A----C----------CGGACC-G----AGGGTTGCGGCAGCACATGCTGGGCT
* * * * * *
1270403 TGGGCATGTGCTAGTGTCACATTTTTCTTCGTCGGGGAACCATCACCGGAGCATCACCGGAGAAC
426 CGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
* * * * *
1270468 TTGACCGGTGGCATTTGGGTTCCGACGATC-AGGGGGCCGGGGGGTGTGCGCACAAGATGTGCGA
491 CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
1270532 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
556 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
1270597 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGAG
621 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
1270662 GACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
686 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* ** *
1270727 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACGCCTTCCAAAAAATTG
751 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAATTT
* *
1270792 TAAAAAATTCCGAACCGCAAAAAGTTTC-GAATATCATGAAAAATAGAAAACGAGTCATC
816 TAAAAAATCCCGAACCGCAAAAAGTTTCAGAA-ATCATGAAAAATAGAAAACGAGTCGTC
* * *
1270851 TTGCCATTAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
1270916 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACTCTATCGATCCACAGCTTG
66 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
1270981 CGGATCCCATCTCTCTAGCCGACGTAGTGCCCGCCCACCTA-TCCGCTCGCTCGTTTCGTCGATT
131 TGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC-AGCCCGC-CGCTCGTTTCGTCGGTT
** * * * *
1271045 GGCTTAGGCATACGGAGTTCATTCCCCTTCTAAGATCAGACCGGACCGAGAGTTGCGGTAGCAAG
194 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCTGTAGCAGG
* * * * * * *
1271110 ATCAGCAGCACACAGAGGGGGACCCGTCCGATCCCCGGCTTGCGCATGCCGCCCCTCTAGCAGAC
259 ATCGGTAGCACGCAGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
1271175 TGAGCGCCCGTACGCTCGTTTTGTAGGTTGACTTAGGGATACGGAGTTTATTCCCAGTCTAAGCA
323 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-A
* *
1271240 TACGAAGTTCATTCCCAGTCTAAGATCGGATCCAACCGAGGGTTGCGGCAGCAAATGCTGGGCTT
387 T-C--AG---------A--C------CGG-----ACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * *
1271305 GGGCATGTGCTGGTGTCACATATTTCTTCGTCGGGGCACCATCGCCGGTGCATCACCGGAGAACC
427 GGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACC
* ** * * *
1271370 TGACCGACGATATTGGGGTTCCGGCGATCGGGGGGG-TGGGGGGTGTGCACACATGATGTGCGAT
492 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* *
1271434 GGGTGCTGGTA-------C-----TTGGCCCCCTATCCCACATCAAACCTC-AGGAACTCATACC
557 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACC
* * *
1271486 CCCTTAAGGAGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
621 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
1271551 GACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
686 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
1271616 GTGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCGAAAAAAATT
751 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC-CAAAAAATT
* * * ** * * *
1271681 TTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATTGTGAAAACTAGAAAACGAGTTGAC
815 TTAAAAAATCCCGAACCGCAAAAAGTTTCAGAAATCATGAAAAATAGAAAACGAGTCGTC
* *
1271741 TTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
1271806 AATTGGCATGCAGAAATATGAATATGTGCCTAAACCCACCTGCAACCCTATCGATCCACGGCTTA
66 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
1271871 TGCATCCCGTCTCTCTGGTCGACGTAGTGTCCGCCCGCCGCCCGCCCGCCCGCTTGTTTCGTTGA
131 TGCATCCCGTCTCTCTGGCCGACGTAGTG-CC-CGC-CCGCCAGCCCG-CCGCTCGTTTCGTCGG
* * *
1271936 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTTGCA
192 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCTGTAGCA
* * * *
1272001 AGATTGGTAGCACGCAGAGGGGGACCCGGCCGA-CCCCTGGCTTGCGCATCCTGCCCCTTTGGCC
257 GGATCGGTAGCACGCAGAGGGGGACCC-GCCGATCCCC-GGCTTGCGCATCCCGCCCCTCTGGCC
* * * *
1272065 AGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAGTTAGGCATACAGAGTTCATT-CC---C--A
320 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1272124 GAT----------CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTT
385 GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTT
* * * *
1272179 TTCTTCGTCGGGG-ACCATCACCGGAGCATCGTCGGAGAACCTGACCGGTGGCATTTGGGTTCCG
450 TTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* * *
1272243 ACGATC-AGGGGGCCGGGGGAGTGTGCGCACAAGATGTGTGATGGGTGCTGGTACTTGGCCCTTA
515 ACGATCGGGGGGGCCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
1272307 TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTT
579 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * * *
1272372 TACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACATTTTTTTGAAATGGTCTCA
644 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
1272437 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGCATC
709 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * *
1272502 ACGTCTACCATGTTTGGGGACAAAACTCCTTCCAAAAAAATTTAAAAAAAATCCCGAACCGCAAA
774 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC-AAAAAATTT-TAAAAAATCCCGAACCGCAAA
* * * *
1272567 AAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTTGTC
837 AAGTTTCAGAAATCATGAAAAATAGAAAACGAGTCGTC
1272605 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
1272670 CATTGGCACACAAAAATAGGAAGATGTGCCTAAACCAACCTATCACCCTATCAATCCACGGCTTG
66 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
1272735 CT-CATCCCATCTCTCTAGCCGACGTAGTGCCCGCCCGTCC-GCCCGCCCGCTCGTTTCGTCGGT
131 -TGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCAGCCCG-CCGCTCGTTTCGTCGGT
**
1272798 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTG-TG-A-CAA
193 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCTGTAGC-A
* * * * * * *
1272860 TGGGATTGGTAGCACGCAGAGGGGGACCTGACCAATCCTCGGCTTGCGCATCCTGCCCCTTTGGT
257 --GGATCGGTAGCACGCAGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
1272925 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATTTA
319 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
1272990 AGGTCGGACCGAACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATT
384 AGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATT
* ** * * * ** * *
1273055 TCTCTTCACCGGGGAACCATCACCGGAGCATCACCAAAGAACCTGACCGACGGCATTTGGGTTCC
449 TTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* * *
1273120 GACGATC-AGGGGGCC-GGGGGTGTGCGCACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTT
514 GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
1273183 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCCCACCCTCTTAAAGAGCATTTGAGATTT
579 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * * *
1273248 TACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAATTGGGGACACTTTTTTGAAATGATCACA
644 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
1273313 AAATCTTGTACACTTCAAGTTCTTAGTTGAATTTTTTTGCGCATGCCAACAAAAATA-AAGGATC
709 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * *
1273377 AAGTCTACCAAGTTTGAGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGTAAAA
774 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGCAAAA
*
1273442 AGTTT-TGAAAATCATGAAAAATAGAAAACGAGTCGTC
838 AGTTTCAG-AAATCATGAAAAATAGAAAACGAGTCGTC
* * *
1273479 TTGCCATGAAACGTCACGTGAAGGCTTAAAGGACAATTGTATGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
1273544 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCT-TCGATCCA-GAGCT
66 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACG-GCT
** * * * * * * *
1273607 TGTGCATCTTGTCTTTCTGGCCGGCGTAGTGCCTGTCCTCTAGCCCGCCCGTTCGTTTCGTCGGT
129 TGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCAGCCCG-CCGCTCGTTTCGTCGGT
*
1273672 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-TCGAGGGTTG-TGGTAGC
193 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCT-GTAGC
* * ** * * *
1273735 AGGATGGGCAGCACATAGAGGGGGACCCGACCGATCCCCGACTTGCGTATCCCACCCCTCTGGCC
256 AGGATCGGTAGCACGCAGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
*
1273800 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
320 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
1273865 GATTGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGTTCGGGCATGTGCTGGTGTCGGATTT
385 GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTT
* * * * ** * *
1273930 TTCTTTGTCGGGGCACCATTGTCAGAGCATCAACGGAGAACCTGACCGACGGCATTGGGGTTTCG
450 TTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCG
* *
1273995 ACGATCGGGTGGGTCGTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
515 ACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
1274060 TATTGGCCCCCTATACCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
579 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
1274125 TACAAGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-
644 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
1274189 AAATCTTGTACATTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
709 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* ** * *
1274254 ACTTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAATTTTTAAAAATCTCGAACCGCAAAAA
774 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAA
*
1274319 GTTT-GGAAAATCATGAAAAATAGAAAACGAGTCGTC
839 GTTTCAG-AAATCATGAAAAATAGAAAACGAGTCGTC
* ** * *
1274355 TTGCCATGAAATTTCTTGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT-C
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
1274419 CTATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGACCCACAGCTT
66 C-ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
1274484 GCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCA-CCCGTCCGCTCGTTTCATCGAT
130 GTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCAGCCCG-CCGCTCGTTTCGTCGGT
* * * * * *
1274548 TGGCTTAGGCATACAGAGTTCATTCCCAGTCAAAAATTAGACTGGACTGAAGGTTG-TGGTAGCA
193 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCT-GTAGCA
** * * * * *
1274612 GGATTAGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTACACATCCCGCCCCTCTGGCCG
257 GGATCGGTAGCACGCAGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
1274677 GTTGAGCTCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
321 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
**
1274742 CATACAGAGTTCATTCTTAGTCTAAGATTGGACCAGACCGAGGGTTATGGCAGCACATGCTGGGC
386 -AT-C--AG---A--C-----C--------G----GACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * * *
1274807 TTGGGCATATGCTGGTG-CTGCATTTTTCTTCG-CTAGGCCACCATCGTCGGAGCTTCGTCGGAG
425 TCGGGCATGTGCTGGTGTC-GCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * * *
1274870 AACCTAACCGGTGGCATTGGGGTTCCGACAATCGGGGGGGTC-GGGGGTGTGTGCAAATGATGTG
488 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
1274934 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-CTGAGAACTCA
553 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACTCA
* * *
1274998 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTTAAA
617 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
1275063 TGCGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
682 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
1275128 GTGCATG
747 GTGCATG
1275135 GCATGCTGAA
Statistics
Matches: 6047, Mismatches: 710, Indels: 312
0.86 0.10 0.04
Matches are distributed among these distances:
849 5 0.00
850 52 0.01
851 91 0.02
858 2 0.00
859 1 0.00
860 2 0.00
861 180 0.03
862 9 0.00
863 216 0.04
864 193 0.03
865 1 0.00
867 3 0.00
869 201 0.03
870 73 0.01
871 618 0.10
872 11 0.00
873 8 0.00
874 841 0.14
875 372 0.06
876 940 0.16
877 296 0.05
878 59 0.01
879 2 0.00
880 1 0.00
882 1 0.00
883 1 0.00
886 3 0.00
887 2 0.00
888 1 0.00
889 212 0.04
890 194 0.03
891 4 0.00
892 8 0.00
893 173 0.03
894 3 0.00
896 6 0.00
897 1 0.00
898 1 0.00
900 334 0.06
901 802 0.13
902 117 0.02
905 2 0.00
906 3 0.00
907 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
TGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCAGCCCGCCGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCTGTAGCAGGAT
CGGTAGCACGCAGAGGGGGACCCGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTC
GTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
GGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
CCAAGTTTGGGGCCAAAAATCCTTCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAG
AAATCATGAAAAATAGAAAACGAGTCGTC
Found at i:1270362 original size:26 final size:26
Alignment explanation
Indices: 1270310--1270362 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1270300 GTTAACTTAG
* *
1270310 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
1270336 GCATACAGAGTTCATTCCCAATTTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1270362 G
1 G
1270363 GTCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1270758 original size:901 final size:900
Alignment explanation
Indices: 1269435--1275134 Score: 7202
Period size: 901 Copynumber: 6.4 Consensus size: 900
1269425 GTTGACTTAG
* * * * **
1269435 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGATAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * **
1269500 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGACGGGGCACCATCGTCAGAGCATCGTCGGAGA
65 CTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * * *
1269565 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGTGGCCGGGCGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGTGTGCGCACAAGATGTGC
1269630 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
1269695 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* *
1269760 GGGACAC-TTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTATTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
1269824 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAT
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAT
* * *
1269889 TTTAAAAAATCTCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
454 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
1269954 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
1270019 GGCACGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
584 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * ** * * * *
1270084 TCTCGTCTCTCTGGCCGACGTAGTGCCCCCCCGCCCACCCGTACGCTCATTTCGTGGGTTGACTT
649 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGATTGGCTT
* * * * * * *
1270149 AGGCATACGGAGTTCATTCCCTGTCTAAGAT-TGAATCGGACCAAGGGTTGCAGTAGTAGGATCG
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGTAGCAGGATTG
* * * *
1270213 GTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTACCCCTTTGGCCGGCTGAG
778 GCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* * * *
1270278 CACCTGCACACTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
1270336 GCATACAGAGTTCATTCCCAATTTAAGGTCGGACCAGACCAAGGGTTGCGATAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1270401 CTTGGGCATGTGCTAGTGTCACATTTTTCTTCGTCGGGGAACCATCACCGGAGCATCACCGGAGA
65 CTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* ** * *
1270466 ACTTGACCGGTGGCATTTGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACAAGATGTGCG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACAAGATGTGCG
*
1270531 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
1270596 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGA
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
*
1270661 GGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
1270726 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAACGCCTTCCAAAAAATT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATT
* * * * *
1270791 GTAAAAAATTCCGAACCGCAAAAAGTTTCGAATATCATGAAAAATAGAAAACGAGTCATCTTGCC
455 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
1270856 ATTAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTG
520 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
1270921 GCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACTCTATCGATCCACAGCTTGCGGAT
585 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * *
1270986 CCCATCTCTCTAGCCGACGTAGTGCCCGCCCACCTATCCGCTCGCTCGTTTCGTCGATTGGCTTA
650 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGATTGGCTTA
** * * **
1271051 GGCATACGGAGTTCATTCCCCTTCTAAGATCAGACCGGACCGAGAGTTGCGGTAGCAAGATCAGC
715 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATTGGC
* * * *
1271116 AGCACACAGAGGGGGACCCGTCCGATCCCCGGCTTGCGCATGCC-GCCCCTCTAGCAGACTGAGC
780 AGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCTGCCCCTCTGGCCGGCTGAGC
* * * * *
1271180 GCCCGTACGCTCGTTTTGTAGGTTGACTTAGGGATACGGAGTTTATTCCCAGTCTAA
844 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1271237 GCATAC-GAAGTTCATTCCCAGTCTAAGATCGGATCCAACCGAGGGTTGCGGCAGCAAATGCTGG
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCGGA-CCGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
1271301 GCTTGGGCATGTGCTGGTGTCACATATTTCTTCGTCGGGGCACCATCGCCGGTGCATCACCGGAG
64 GCTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAG
** * ** * *
1271366 AACCTGACCGACGATATTGGGGTTCCGGCGATCGGGGGGGTGGGGGGTGTGCACACATGATGTGC
129 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACAAGATGTGC
* *
1271431 GATGGGTGCTGGTA-------C-----TTGGCCCCCTATCCCACATCAAACCTC-AGGAACTCAT
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCAC
* *
1271483 ACCCCCTTAAGGAGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
*
1271548 GGGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
1271613 TGCGTGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCGAAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAA
* * ** * * *
1271678 ATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATTGTGAAAACTAGAAAACGAGTTGACTT
452 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
1271743 GCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGAA
517 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * * **
1271808 TTGGCATGCAGAAATATGAATATGTGCCTAAACCCACCTGCAACCCTATCGATCCACGGCTTATG
582 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
1271873 CATCCCGTCTCTCTGGTCGACGTAGTGTCCGCCCGCCGCCCGCCCGCCCGCTTGTTTCGTTGATT
647 CATCCCGTCTCTCTGGCCGACGTAGTG-CC-CGC-CCGCCCACCCGCCCGCTCGTTTCGTCGATT
* * *
1271938 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTTGCAAG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGG
* * * * *
1272003 ATTGGTAGCACGCAGAGGGGGACCCGGCCGA-CCCCTGGCTTGCGCATCCTGCCCCTTTGGCCAG
774 ATTGGCAGCACACAGAGGGGGACCCGACCGATCCCC-GGCTTGCGCATCCTGCCCCTCTGGCCGG
*
1272067 CTGAGCGCCCGCACGCTCGTTTCAT-GG--G---T-----T---GAG----TT---AG-----
838 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1272104 GCATACAGAGTTCATT-CC---C--AGAT---------CGAGGGTTGCGGCAGCACATGCTGGGC
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * **
1272154 TCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG-ACCATCACCGGAGCATCGTCGGAGAA
66 TTGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAA
** * * *
1272218 CCTGACCGGTGGCATTTGGGTTCCGACGATCAGGGGGCCGGGGGAGTGTGCGCACAAGATGTGTG
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGG-GTGTGCGCACAAGATGTGCG
*
1272283 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
1272348 CTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* * *
1272413 GGACATTTTTTTGAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
1272478 CATGCCAACAAAAATAAAAGCATCACGTCTACCATGTTTGGGGACAAAACTCCTTCCAAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAT
* * * *
1272543 TTAAAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTTGTCTTG
454 TT-TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
1272608 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * *
1272673 TGGCACACAAAAATAGGAAGATGTGCCTAAACCAACCTATCACCCTATCAATCCACGGCTTGCTC
583 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
1272738 ATCCCATCTCTCTAGCCGACGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
648 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGATTGGCT
** * * ** ***
1272803 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGTGACAATGGGATTG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATTG
* * * * * * *
1272868 GTAGCACGCAGAGGGGGACCTGACCAATCCTCGGCTTGCGCATCCTGCCCCTTTGGTCGGCTGAG
778 GCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
1272933 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CC---C--A
843 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
1272985 --AT------TT-A-----AG-----G-TCGGACCGAACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCG-ACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * **
1273030 CTCGGGCATGTGCTGGTGTCACATTTCTCTTCACCGGGGAACCATCACCGGAGCATCACCAAAGA
65 CTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* *
1273095 ACCTGACCGACGGCATTTGGGTTCCGACGATCAGGGGGCC-GGGGGTGTGCGCACAAGATGTGCG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACAAGATGTGCG
* * *
1273159 ATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCCCAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
1273224 CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAATTGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* * * * * *
1273289 GGACACTTTTTTGAAATGATCACAAAATCTTGTACACTTCAAGTTCTTAGTTGAATTTTTTTGCG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
1273354 CATGCCAACAAAAATA-AAGGATCAAGTCTACCAAGTTTGAGGCCAAAACTCCTTCCAAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAT
* **
1273418 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
454 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * *
1273483 CATGAAACGTCACGTGAAGGCTTAAAGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATT
519 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
1273548 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCT-TCGATCCA-GAGCTTGTG
584 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACG-GCTTGCG
** * * * * * * * *
1273611 CATCTTGTCTTTCTGGCCGGCGTAGTGCCTGTCC-TCTAGCCCGCCCGTTCGTTTCGTCGGTTGG
647 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCA-CCCGCCCGCTCGTTTCGTCGATTGG
* * *
1273675 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGTAGCAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGAT
* * * * **
1273740 GGGCAGCACATAGAGGGGGACCCGACCGATCCCCGACTTGCGTATCCCACCCCTCTGGCCGGCTG
776 TGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
1273805 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CC---C-AA
841 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
1273860 TC-T--A-AG---ATT----G-----GATC-G---GACCGAGGGTTGCGGCAGCACATGCTGGG-
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * *
1273904 TTCGGGCATGTGCTGGTGTCGGATTTTTCTTTGTCGGGGCACCATTGTCAGAGCATCAACGGAGA
66 TT-GGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGA
* * *
1273969 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGTGGGTCGTGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGCCG-GGGGGTGTGCGCACAAGATGTG
* *
1274034 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTGGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
1274099 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* *
1274164 GGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACATTTAGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * **
1274228 TGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * **
1274293 TTTTTAAAAATCTCGAACCGCAAAAAGTTTGGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
453 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* ** * *
1274358 CCATGAAATTTCTTGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT-CCTA
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-A
* * * *
1274422 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGACCCACAGCTTGCG
582 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
1274487 CATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCCACCCGTCCGCTCGTTTCATCGATTGGC
647 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGATTGGC
* * * * * * * *
1274552 TTAGGCATACAGAGTTCATTCCCAGTCAAAAATTAGACTGGACTGAAGGTTGTGGTAGCAGGATT
712 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATT
* * * * * *
1274617 AGCAGCACACAGAGGGGGACCCGATCGATCCCCGGCTTACACATCCCGCCCCTCTGGCCGGTTGA
777 GGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* *
1274682 GCTCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * **
1274741 GCATACAGAGTTCATTCTTAGTCTAAGATTGGACCAGACCGAGGGTTATGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACC-GACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
1274806 CTTGGGCATATGCTGGTG-CTGCATTTTTCTTCG-CTAGGCCACCATCGTCGGAGCTTCGTCGGA
65 CTTGGGCATGTGCTGGTGTC-GCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCACCGGA
* ** * * *
1274869 GAACCTAACCGGTGGCATTGGGGTTCCGACAATCGGGGGGGTC-GGGGGTGTGTGCA-AATGATG
128 GAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACAA-GATG
1274932 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-CTGAGAACT
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACT
* * *
1274996 CACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTTA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
* * *
1275061 AATGCGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
1275126 TTGTGCATG
385 TTGTGCATG
1275135 GCATGCTGAA
Statistics
Matches: 4189, Mismatches: 491, Indels: 238
0.85 0.10 0.05
Matches are distributed among these distances:
850 57 0.01
851 91 0.02
858 1 0.00
861 161 0.04
862 7 0.00
863 217 0.05
864 194 0.05
866 2 0.00
867 16 0.00
868 2 0.00
872 4 0.00
873 6 0.00
874 483 0.12
875 65 0.02
876 647 0.15
877 268 0.06
878 62 0.01
879 9 0.00
880 1 0.00
881 3 0.00
882 2 0.00
884 1 0.00
885 2 0.00
887 1 0.00
888 4 0.00
889 211 0.05
890 196 0.05
891 2 0.00
892 11 0.00
893 151 0.04
894 1 0.00
897 3 0.00
898 1 0.00
899 1 0.00
900 327 0.08
901 862 0.21
902 112 0.03
903 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGACCGAGGGTTGCGGCAGCACATGCTGGGC
TTGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACAAGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTT
TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGATTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATTGGCA
GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1271242 original size:26 final size:26
Alignment explanation
Indices: 1271213--1271263 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1271203 TGACTTAGGG
* *
1271213 ATACGGAGTTTATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
1271239 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
1271264 ATCGGATCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:1274744 original size:26 final size:26
Alignment explanation
Indices: 1274715--1274767 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1274705 GTTGACTTAG
*
1274715 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
1274741 GCATACAGAGTTCATTCTTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1274767 G
1 G
1274768 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1275457 original size:26 final size:26
Alignment explanation
Indices: 1275421--1275473 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1275411 GTTGACTTAG
1275421 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1275447 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1275473 G
1 G
1275474 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1276334 original size:26 final size:27
Alignment explanation
Indices: 1276283--1276336 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
1276273 GTTGAATTAG
1276283 GCATACAGAGTTCATTTCCCAGTCTAA
1 GCATACAGAGTTCATTTCCCAGTCTAA
*
1276310 GCATACGGAGTTCA-TTCCCAGTCTAA
1 GCATACAGAGTTCATTTCCCAGTCTAA
1276336 G
1 G
1276337 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (27 bp):
GCATACAGAGTTCATTTCCCAGTCTAA
Found at i:1277223 original size:26 final size:25
Alignment explanation
Indices: 1277187--1277242 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 25
1277177 TAGCCCCCAC
1277187 TACGGAGTTCATTCCCACTCTAAGCA
1 TACGGAGTTCATTCCCACTCTAA-CA
*
1277213 TACGGAGTTCATTCCCAGTCTAACA
1 TACGGAGTTCATTCCCACTCTAACA
1277238 T-CGGA
1 TACGGA
1277243 TCGGACCGAG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.14
25 3 0.10
26 22 0.76
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.27
Consensus pattern (25 bp):
TACGGAGTTCATTCCCACTCTAACA
Found at i:1278101 original size:26 final size:26
Alignment explanation
Indices: 1278071--1278123 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1278061 GTTGACTTAG
1278071 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
1278097 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1278123 G
1 G
1278124 ATCGGATTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1278220 original size:11 final size:11
Alignment explanation
Indices: 1278204--1278236 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
1278194 GTCAGGGCAC
1278204 CATCGCCGGAG
1 CATCGCCGGAG
1278215 CATCGCCGGAG
1 CATCGCCGGAG
1278226 CATCGCCGGAG
1 CATCGCCGGAG
1278237 AACCTGATCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.36, T:0.09
Consensus pattern (11 bp):
CATCGCCGGAG
Found at i:1279013 original size:26 final size:26
Alignment explanation
Indices: 1278977--1279029 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1278967 GTTGACTTAG
1278977 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1279003 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1279029 G
1 G
1279030 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1279729 original size:26 final size:26
Alignment explanation
Indices: 1279700--1279752 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1279690 GTTGCCTTAG
1279700 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1279726 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1279752 G
1 G
1279753 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1280640 original size:26 final size:26
Alignment explanation
Indices: 1280604--1280653 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1280594 GACTTAGGTG
*
1280604 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGCCTAAGCA
1280630 TACGGAGTTCATTCCCAGCCTAAG
1 TACGGAGTTCATTCCCAGCCTAAG
1280654 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGCCTAAGCA
Found at i:1281374 original size:899 final size:894
Alignment explanation
Indices: 1279620--1282094 Score: 3414
Period size: 899 Copynumber: 2.8 Consensus size: 894
1279610 ATGTGCCTAA
* * * *
1279620 ACCCGATCGATCCCCGACTTGCGCATCTCGCCCCTCTAGTCAGCTGAGCGCCCTCACGGTCGGTT
1 ACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTAGTCGGCTGAGCGCCCGCACGCTC-GTT
* *
1279685 T-GTGTGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
65 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * *
1279749 TAAGATCGGATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
130 TAAGATCGAATCGGACCGA-GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
*
1279814 TTTTTCTTCCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTT
194 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTT
* * *
1279879 -TCGACGATCGGGGGTGCTGGGGGGGTGTGCACACATGATGTGAGATGGGTGCTGGTACTTGGCC
259 CT-GGCGATCGGGGG-GCAGGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCC
*
1279943 CTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
322 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
1280008 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
387 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * *
1280073 CACAAAATCTTGTACACCTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACAAG
452 CACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
** * ** ** * * *
1280138 GATCACGTCTACCAAGTTGGGGCCGGAAGAGCTTCCAAAAAAATTTTGAAAAATCCTGAA-CCTC
517 GATCAATTGT-CCAAGTTGGGGCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCT-
* * *
1280202 AAAAAGTTTCAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTTACGCGAAGG
580 AAAAAGTTTGAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
1280266 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGCAGAAATATTAAGA
644 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACGCAGAAATATGAAGA
* * *
1280331 TGTGCCTAAACCCACCTACCACCCTATCGATCAATGACTTGCGATCCCGTCTCTCTGGTCGGCAT
709 TGTGCCTAAACCCACCTACCACCCTATCGATCAATGACTTGCCATCCCATCTCTCTGGCCGGCAT
*** * * * * *
1280396 AGTACCCGCCCGTCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCC
774 AGT---CGCCAACCCGCCCACCAGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCAGTCCC
*
1280461 AGTCTAAGATCAGACCGGACCGAGGGTTACGGCAGCAGGATCGATAGC-ACAT-AAAGGGGG
836 AGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGAT--A-AGCAACATCAAAGGGGG
* * * * * * *
1280521 ACCCGACCGATCCTCGACTTGTGCATCCCGTCCCTCTAGCCGGCTGAACGCCCGCACGCTCATTT
1 ACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTAGTCGGCTGAGCGCCCGCACGCTCGTTT
** *
1280586 CGTGGGTTGACTTAGGTGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGCCT
66 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* ** * * *
1280651 AAGATCGAATCGGACCGCAGGTTGCGATAGCATGTACTAGGCTCGGGCATGTGCTGGTGCCACAT
131 AAGATCGAATCGGACCG-AGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* *
1280716 TTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGTATT-GGGTTC
195 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTC
* * * *
1280780 TGGCGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATCGGTGCTGGTACTTGGCCCTT
260 TGGCGATCGGGGGGCAGGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTT
*
1280845 ATATTGGCCCCCTATCCCTCATCCAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
325 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
1280910 TTATAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
390 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
1280975 AAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
455 AAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGAT
1281040 CAATTGTCCCAAGCTTGGGGCCAAAAGTCCTTCCGAAAAAATTTTTAAAAAATCCCGAACCCTAA
520 CAATTGT-CCAAG-TTGGGGCCAAAAGTCCTTCCGAAAAAA-TTTTAAAAAATCCCGAACCCTAA
* * *
1281105 GAAGTTTAGAAAATAGTGAATAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCT
582 AAAGTTT-GAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
** *
1281170 TAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGCATTGGCACGCAGAAATATGAAGATG
646 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACGCAGAAATATGAAGATG
* *
1281235 TGCCTAAACCCACCTACCACCCTATCGATCAATGGCTTGCACATCCCATCTCTCTGGCCGGCGTA
711 TGCCTAAACCCACCTACCACCCTATCGATCAATGACTTGC-CATCCCATCTCTCTGGCCGGCATA
*
1281300 GT-GCCAACCCGCCCACCAGCTCGTTTCATCGATTGGCTTAGGCATACGGAGTTCAGTCCCAGTC
775 GTCGCCAACCCGCCCACCAGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCAGTCCCAGTC
* * ** *
1281364 TGAGATCAGACCAGATCGAGGGTTGTGGCAGCAGGATAAGCAACATGCAGAGGGGG
840 TAAGATCAGACCAGACCGAGGGTTACGGCAGCAGGATAAGCAACAT-CAAAGGGGG
* * * * * * *
1281420 ACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTCGTCGACTGAGTGCCCGCTCGCTTGTTT
1 ACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTAGTCGGCTGAGCGCCCGCACGCTCGTTT
* * * * *
1281485 CGTGGGTTGACCTAGGCATACGAAGTTCATTCCCGGTCTAACCATACGGAGTTCATTCCCAGTGT
66 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * *
1281550 AAGATC-AGACCGGACCGAGGTTTGCGACCGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGTA
131 AAGATCGA-ATCGGACCGAGG-TTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * *
1281614 TTTTTCTTCGTCGGGTCACCA---TC---G-A----CGGAGAACCTGATCGATGGCATTGGGGTT
194 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTT
* * *
1281668 CCT-GTGATCGGGAGGGCAGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCC
259 -CTGGCGATCGGG-GGGCAGGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCC
* *
1281732 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT--CACCTCCTTAAAGGGCATTTGAG
322 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
1281795 ATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
387 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * * * *
1281860 CACAAAATCTTGTACAGTTCCAGTTTTTAGCTGAATTTGTTTGTGCAAGCCAAAAAAAATAAAAA
452 CACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
* * *
1281925 GATCACATATG-CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCGAACCG
517 GATCA-AT-TGTCCAAG-TTGGGGCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCC
* * *
1281989 TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGCACGTGATG
579 TAAAAAG-TTTGAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
1282054 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
643 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1282095 TGCCTAAACC
Statistics
Matches: 1401, Mismatches: 153, Indels: 54
0.87 0.10 0.03
Matches are distributed among these distances:
887 112 0.08
888 201 0.14
889 14 0.01
890 90 0.06
892 1 0.00
893 1 0.00
896 5 0.00
897 5 0.00
898 4 0.00
899 510 0.36
900 40 0.03
901 243 0.17
902 153 0.11
903 22 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
ACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTAGTCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCGAATCGGACCGAGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCT
GGCGATCGGGGGGCAGGGGGGGTGTGCGCACATGATGTGAGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
AATTGTCCAAGTTGGGGCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCCTAAAAAG
TTTGAAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCACGCAGAAATATGAAGATGTGCCT
AAACCCACCTACCACCCTATCGATCAATGACTTGCCATCCCATCTCTCTGGCCGGCATAGTCGCC
AACCCGCCCACCAGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCAGTCCCAGTCTAAGAT
CAGACCAGACCGAGGGTTACGGCAGCAGGATAAGCAACATCAAAGGGGG
Found at i:1282712 original size:26 final size:26
Alignment explanation
Indices: 1282676--1282728 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1282666 GTTGACTTAG
* *
1282676 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
1282702 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
1282728 G
1 G
1282729 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:1284493 original size:26 final size:26
Alignment explanation
Indices: 1284453--1284508 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
1284443 TGGGTTGACT
* * *
1284453 TAAGCATACAGAGTTCATTTCCATTC
1 TAAGCATACAAAGTTCATTCCCAGTC
1284479 TAAGCATACAAAGTTCATTCCCAGTC
1 TAAGCATACAAAGTTCATTCCCAGTC
1284505 TAAG
1 TAAG
1284509 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.23, G:0.12, T:0.30
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATTCCCAGTC
Found at i:1286597 original size:900 final size:898
Alignment explanation
Indices: 1282318--1286856 Score: 5841
Period size: 900 Copynumber: 5.1 Consensus size: 898
1282308 TGCCCCCCGG
* * *
1282318 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTAAAAGCCATAAAACTGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
1282383 TTGGCATGTAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
66 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** *
1282448 CAACCCGTCTCTCTGGCCAGCGTAGTGCCCGTCCGCCACCCTGCCCGCTTATTTCGTCGGTTGTC
131 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCC-CCC-GCCCGCTCGTTTCGTCGGTTGGC
* * * ** *
1282513 TTAGGCATACGAAGTTCATTCCTAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGTAGGATC
193 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATC
* * ** ** * * *
1282578 GACAGTACGCAGAGGGGGACCCGGTCGATCCCCGGCTTAAGCATCCCACCCTTCTGGCCGGTTGA
258 GACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * *
1282643 GCGGCCGCACTCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATAC
323 GCGCCCGCACGCTCATTTCAT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * ** *
1282708 GGAGTTCACTCCCAGTCTAAGATCGGATTGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
387 AGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
** * ** * *
1282773 CACATGTTGGCACCGTATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGA
452 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGA
* * * * *
1282838 CCGACGGCATTAGGCTTTCGGTGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
517 CCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGG
* ** *
1282903 GTGCTGGTACTTGGCCCATATATTTTCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
581 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
1282968 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTAAAATGGGGAC
646 TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
1283033 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCATG
711 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
1283098 CCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCATCCGAAAAAATTTTA
776 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTA
* * * *
1283163 AAAAAT-CTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACAAGTCGTCAT
840 AAAAATCCT-GAACCCTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
1283222 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
1283287 TTGGCACATAGAAATATGAACATGTGCATAAACCCACCTACCACCCTATCGATCCACGCCTTGCG
66 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * ** *
1283352 CATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCC-CGCCCACCCGCTCGTTTTC-TTTGTTGGCTG
131 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCCCGCCCGCTCG-TTTCGTCGGTTGGCTT
* * * *** * * *
1283415 AGGCATACAGAGTTCATTCCTAGTCTAAGATTAGATTGGACCGAGGGTTGTCGCAGCAGGACCGA
195 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGA
** * * *
1283480 CAGCACACAGAGGGGGACCCGACCGATCCCTAGCATGCGTATCCCGCCCCTCTAGCCGGCTGAGC
260 CAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
** * *
1283545 GTTCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAG----TT--CA-T-T---C---C--
325 GCCCGCACGCTCATTTCAT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
* *
1283594 ----CA-----A-TCTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
389 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * *
1283649 TGTGATGGTGCCGCACTTTTT-TTCGTCGGGGCACCATCGTCGGAGCAACGCCAGAGAACCTAAC
454 TGTGCTGGTGCCGCA-TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGAC
* * * * *
1283713 CGACGGCATTGGGGTTCCGGCGGT-AGAGGGGCCGGGGGGTGTGAGCACATGTTGTGCGATGGGT
518 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* *
1283777 GCTGGTACTTGGCCTTTATATTGGCCCCCTACCCCTCATCAAACCTCGCA-AACTCACACCCCCT
583 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AGAACTCACACCCCCT
* *
1283841 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACA
647 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
1283906 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCCGAATGTTTTTGTGCATGT
712 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-
* * * * *
1283971 CGAA-AAAAATACAAGGATCTCGTCTACCAAGTCTGGGGCCAAAACTCCATCCGAAAAAATTTTT
776 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTA
* *
1284035 AAAAAT-CTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
840 AAAAATCCT-GAACCCTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
1284094 GCCATGAAACTTCACCTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCCTAAAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
1284159 TTGGCACGCAGAAATATGAAGATGTGCCAAAACCCACCTACCATCCTATCGATCCATGGCTTGTG
66 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
1284224 CATCCTGTCTCTCTGGCCGGCGTAGTTCTCGCCCGCCCGCCCGCCTGCCCGCTCGTTTTGTCGGT
131 CATCCCGTCTCTCTGGCCGGCGTAG---T-GCCCG-CCGCCC-CC-GCCCGCTCGTTTCGTCGGT
* *
1284289 TGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAG
189 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAG
* * * * *
1284354 GATCGACAGCACGCAGAGGGGGACCC-AGCCTATCCCCGGCTTACGCATCTCGCCCCTCTGGCTG
254 GATCGACAGCACACAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * * * *
1284418 GCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGTTCATTTCCATTCTAAG
318 GCTGAGCGCCCGCACGCTCATTTCAT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
1284483 CATACAAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-GGATAGCACTTGCTAGG
382 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG-CAGCACATGCTGGG
* ** **
1284547 CTCGTGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGTC---G----G--A-A-A
446 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGA
* * * ** * * *
1284601 ACCTAACCGGCGGCATTGGCGTTCCAACGATTGGGGGGGCCGGGGGGTGTTCTCACATGATGTGC
511 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
1284666 GATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCGCA
576 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
1284731 CCCCCTTAAAGAGCATTTGAGATTTTATAGGCTTGCCGCCAGTAGCTATTAAAGTGTCTGAAATG
641 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
1284796 GGGACACTTTTTTGAAATGGTCACAAAATCTTATACACTTCGTGTTTCTAGCTGAATTTTTTTGG
706 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
1284861 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
771 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAA
* * * ** * * *
1284926 TTTAAAAAAATCTTGAACCGC-AAACAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCATCTT
835 TTTTAAAAAATCCTGAACC-CTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
1284990 GGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
1285055 TTGGCACACAGAAATATGAAGATATACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
66 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
1285120 CATCCCGTCTCTCCGACCGGCATAGTG--C-CCG--CCCGCCCGCTCATTTCGTCAGTTGGCTTA
131 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
1285180 GGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGATCGGATCGAGGGTTGTGGCAGCAGGATCGG
196 GGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACCGAGGGTTGTGGTAGCAGGATCGA
* * * *
1285244 CAGAACTCAGAGGGGGACCCGGCCGATCCCCGGCTTGGGCATCCCGCCCCTCTGGCCGGCTGAGC
260 CAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * * *
1285309 GCTCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGGGTTAATTCCCAATCTAACCATAC-G
325 GCCCGCACGCTCATTTCAT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAG
* * * * *
1285373 AAGATCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCACAAGCTGGGCTCGGGC
389 -AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
1285438 ATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGAC
453 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGAC
** * * * * * *
1285503 CGGTGACATTGGGCTTCCGACGATCGGGGGGGCTGGGGGGTGTGCACACATGATGTGTGATGGGT
518 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
1285568 GCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCCCCTT
583 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
1285633 AAAGAGCATTTGA-AGGTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACA
648 AAAGAGCATTTGAGA-TTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
1285697 CTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTACGA-G
712 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC-ATG
* * * *
1285761 CCAATAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTGTCGAAAAAATTTTT
776 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCGAAAAAATTTTA
1285826 AAAAATCCTGAACCCTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
840 AAAAATCCTGAACCCTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
1285885 GCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
1285950 TTGGCATGTACAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGGCTTGCG
66 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* **
1286015 CATCCCATCTCTCTGGCCGATGTAGTGCCCGCTCGCCCTCTCGCCCGCTCGTTTCGTCGGTTGGC
131 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CGCCC-C-CGCCCGCTCGTTTCGTCGGTTGGC
* * * *
1286080 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCTAGGGATGTGGTAGCCGAATC
193 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATC
* * * * * *
1286145 GGCAGCACATAGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCGGCTGA
258 GACAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
1286210 GCGCCCGCACGCTCATTTCAT-G-AGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACA
323 GCGCCCGCACGCTCATTTCATGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACA
* * ** * * ***
1286273 GAGTTCATTCCCAGTCTACGATCAGACCGGACCGAGGGTTGCGGCAGCAGTTGTTGGGCTTGTTT
388 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
** * *
1286338 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGAT
453 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGAC
* *
1286403 CGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGA
518 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
1286468 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTCATACCCCCTT
583 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
1286533 AAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCCTTAAAGTGTCTGAAATGGGGACAC
648 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
1286598 TTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
713 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* **
1286663 AACAAAAATACAAGGATCATGTCTACCAAGTTTACGGCCAAAACTCCTTCCGAAAAAATTTTAAA
778 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAA
** *
1286728 AAATCCCAAACCAC-AAAAAGTTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
842 AAATCCTGAACC-CTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
1286785 GCCATAAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
1 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
1286850 TTGGCAC
66 TTGGCAC
1286857 TCAAAAAGAT
Statistics
Matches: 3158, Mismatches: 396, Indels: 166
0.85 0.11 0.04
Matches are distributed among these distances:
872 458 0.15
873 12 0.00
874 114 0.04
875 7 0.00
876 5 0.00
877 2 0.00
878 2 0.00
879 6 0.00
880 158 0.05
883 1 0.00
884 276 0.09
885 4 0.00
886 4 0.00
887 2 0.00
888 4 0.00
889 1 0.00
890 1 0.00
891 2 0.00
892 2 0.00
893 3 0.00
894 6 0.00
895 513 0.16
896 457 0.14
897 3 0.00
898 1 0.00
899 5 0.00
900 708 0.22
901 12 0.00
902 2 0.00
903 156 0.05
904 150 0.05
905 8 0.00
906 73 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGAC
AGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCATTTCATGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAG
TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGA
CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAAT
CCTGAACCCTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
Found at i:1290118 original size:733 final size:718
Alignment explanation
Indices: 1288485--1290439 Score: 2760
Period size: 733 Copynumber: 2.7 Consensus size: 718
1288475 GCGGATCCGG
*
1288485 GGGGTCGGGTGGGGTGTGCGCA-ATTGATGTGCGATGTGTGCTAGTACTTGGCCCTTATATTGGC
1 GGGGTCGGGTGGGGTGTGCGCACA-TGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGC
* *
1288549 CCCCTGTCCCTCAACAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGT
65 CCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGT
*
1288614 TTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
130 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * * * * *
1288679 TTTCATTTCGATTTTTTAGCTGAATTTTTTGGTGCATGCCAGAAAAAATACAAGGATCACGTGTA
195 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* ** * *
1288744 CCAAGTTTGGAGTAAAAACTCCTTCCGAAAAAATTTTTAAAAATCTC-ATACCGTAAAAAGTTTC
260 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGA-ACCGCAAAAAGTTTC
* * *
1288808 AAAAATCGTGAAAAATAGAAAATGAGTCGTCTTTCCATGAAACTTCATGTGAAGGCTTAAGGGAC
324 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
1288873 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA
389 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
*
1288938 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCATAGTGCCCGC
454 -CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCATAGTGCACGC
* * * * * ** *
1289003 CTACCTGTCTGCCTGCTCATTTTATCGAATGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
518 CTACATGTCTGCCTGCTCAGTTAATCCAATGGCTTAAGCATACAAAGTTCATTCCCAATCTAAGA
*
1289068 TAAGACCAAATCGAGGGTTCCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
583 TAAGACCAAATCGAGGGTTCCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTCTT
* * * * *
1289133 CTTCATCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACTGACGGCATTGGGGTTTCGAT
648 CTTCATCGGGGCACCATCACCGGAGCATCACCGCAGAACCTGACCGACGGCACTGAGGTTTCGAT
*
1289198 GATCGG
713 GATCGA
* * * *
1289204 GGGGACCGGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCTTAAATTGGC
1 GGGG-TCGGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGC
* * * * * *
1289269 CCCCTATCCCTGATCGAACCTCTAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTATAGCT
65 CCCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGT
*
1289334 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
130 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
1289399 GTACACTTCGAGTTTTTAGCTG-ATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTA
195 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA
* *
1289463 CCAAGTTTGGGGCCAAAATTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
260 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
*
1289528 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACC
325 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
1289593 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGCTGTGCCTAAAC
390 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * * *
1289658 ACACCTACCATCCTATCGATCCGCGGCTTGAGCATCCCGTCTCTCTGGTCGGCTATGCGTCTGCA
455 -CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGC-AT-AG--TGCA
* * * *
1289723 CGCTCGTTTCATGGGTC-GACTTAGGCATACGGAGTTAATTCCCA-GTC-TAAGCATACAAAGTT
515 CGC-C--TACAT--GTCTG-CCT--GC-T-C--AGTTAA-TCCAATGGCTTAAGCATACAAAGTT
** * * *
1289785 CATTCCCAATCTAAGATTGGACCAGATCGAGGGTTAC-GATAGCACATGCTGGGCTCGGGCATGT
567 CATTCCCAATCTAAGATAAGACCAAATCGAGGGTTCCAG-CAGCACATGCTGGGCTCGGGCATGT
* * ** * **
1289849 GCTGGTGTCGTATTCTTCTTCGTCGGGGCACCATCATTGGAGTATCGTCGCAGAACCTGACCGAC
631 GCTGGTGCCGTATTCTTCTTCATCGGGGCACCATCACCGGAGCATCACCGCAGAACCTGACCGAC
1289914 GGCACTGAGGTTTCGATGATCGA
696 GGCACTGAGGTTTCGATGATCGA
* *
1289937 GGGGTCGAGGTGGGGTATGCGCACATGATGTGCGATGGGTGAC-AGTAGTTGGCCCTTATATTGG
1 GGGGTCG-GGTGGGGTGTGCGCACATGATGTGCGATGGGTG-CTAGTACTTGGCCCTTATATTGG
* *
1290001 CCCCCTATCCCTCATCAAACCTCGAAAACTCACA-ACCCCTTAAAAAGCATTTGAGATTTTACAG
64 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACA-CCCTTAAAGAGCATTTGAGATTTTACAG
1290065 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
128 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * ***
1290130 TTGTACACTTCGAGTGTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATTTTGTC
193 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
* *
1290195 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCACAAAAAGTTT
258 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTT
* *
1290260 CGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
323 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
1290325 CCATTGTATGAACTTACAAGCCA-ATAAAATGGCATTGTCATGCAGAAATATGAAGATGTGCCTA
388 CCATTGTATGAATTTACAAGCCATA-AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
** *
1290389 AAGCCACCTACCACCCTATCGATCCATAGCTTGCGTATCCCGTCTCTCTGG
452 AA-CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
1290440 CCGACGTAGT
Statistics
Matches: 1096, Mismatches: 112, Indels: 41
0.88 0.09 0.03
Matches are distributed among these distances:
718 1 0.00
719 268 0.24
720 194 0.18
721 2 0.00
723 6 0.01
724 1 0.00
726 3 0.00
727 1 0.00
728 5 0.00
730 2 0.00
731 1 0.00
732 4 0.00
733 338 0.31
734 266 0.24
735 4 0.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (718 bp):
GGGGTCGGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAA
AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCATAGTGCACGCCTA
CATGTCTGCCTGCTCAGTTAATCCAATGGCTTAAGCATACAAAGTTCATTCCCAATCTAAGATAA
GACCAAATCGAGGGTTCCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTCTTCTT
CATCGGGGCACCATCACCGGAGCATCACCGCAGAACCTGACCGACGGCACTGAGGTTTCGATGAT
CGA
Found at i:1290693 original size:26 final size:26
Alignment explanation
Indices: 1290653--1290703 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1290643 TTGACTTAGG
* *
1290653 CATACGGAGTTCATTCCTAGTCTAAA
1 CATACGGAGTCCATTCCCAGTCTAAA
1290679 CATACGGAGTCCATTCCCAGTCTAA
1 CATACGGAGTCCATTCCCAGTCTAA
1290704 GATCAAACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTCCATTCCCAGTCTAAA
Found at i:1291105 original size:26 final size:26
Alignment explanation
Indices: 1291076--1291128 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1291066 GTTGACTTAG
* * *
1291076 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTCCAATCCCAATCTAA
*
1291102 GCATACAGAGTCCATTCCCAATCTAA
1 GCATACAGAGTCCAATCCCAATCTAA
1291128 G
1 G
1291129 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTCCAATCCCAATCTAA
Found at i:1292482 original size:746 final size:740
Alignment explanation
Indices: 1291052--1292581 Score: 2287
Period size: 746 Copynumber: 2.1 Consensus size: 740
1291042 AGCGTCCACA
* * * *
1291052 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAATCCCAGTCTAAGCATACAGAGTCCAT
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACAGAGTCCAT
* * *
1291117 TCCCAATCTAAGATCGAATCGGACCGAGGGTAGTGGCAGCACATGCTGGAATCAGGCATGTGCTG
66 TCCCAATCTAAGATCAAACCGGACCGAGGGTAGCGGCAGCACATGCTGGAATCAGGCATGTGCTG
* *
1291182 GTGCCACATTTTACTTCGCCGGAGCACCATCGCCAGAGCATCGCCGGAGAACCTGATCGGCGGCA
131 GTGCCACATTTTACTTCGCCGGAGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCAGCGGCA
* * *
1291247 TTGGGGTTCCGACGATAGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCAAAGGGTACTGGTAC
196 TTGGGGTTCCGACGATAGGGGGGCCGAGGGGGTGTGAGCACATGATGTGCAAAGGGTACTGGTAC
*
1291312 TTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
261 TTGGCCCTTATATTGGCCCCCTACCCCTCAACAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
*
1291377 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
326 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
1291442 AATGGTCACAAAATCTTGTACACTTGGAGTGTTTAGATGAATTTTTTTGTGCACGCCAACAAAAA
391 AATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGATGAATTTTTTTGTGCACGCCAACAAAAA
* * * *
1291507 TACAAGAATCATGTCTACCAAGTTTGGGGCCAACACTCCTTCCGAAAAAATTTTAAAAAATCTCG
456 TACAAGAACCATGTCTACCAAGTTTGGGGCCAAAACTCCCTCCGAAAAAATTTAAAAAAATCTCG
*
1291572 AACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
521 AACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
1291637 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
586 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATA
* * *
1291702 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGTGTATCTCGTCTCTCTGG
651 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGG
* * * * *
1291767 CCGGTGTAGTACATGCTCGTCCGCCTG-C
716 CC--AGCA-TA-ATGCCCGCCCGCCCGTC
* * * **
1291795 CTGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGCACACGGAGTTTA
1 C-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACAGAGTCCA
* * * * *
1291860 TTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGTAGCACATGCTAGG-TTCGGGCATGTGC
65 TTCCCAATCTAAGATCAAACCGGACCGAGGGTAGCGGCAGCACATGCT-GGAATCAGGCATGTGC
** * * * * * *
1291924 TGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCAGTGG
129 TGGTGCCACATTTTACTTCGCCGGAGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCAGCGG
** * * * * *
1291989 CATTGGGGTTTTGGCGATCGGGGGGGCCGAGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGG
194 CATTGGGGTTCCGACGAT-AGGGGGGCCGAGGGGGTGTGAGCACATGATGTGCAAAGGGTACTGG
* * *
1292054 TACTTGGCCCTTATGTTGGCCCCCTACCCCTCATCAAACCTCT-AGAATTCACACCCCCCTTAAA
258 TACTTGGCCCTTATATTGGCCCCCTACCCCTCAACAAACCT-TGAGAACTCACA-CCCCCTTAAA
1292118 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGAGG-CACTT
321 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG-GGACACTT
* * *
1292182 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
385 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGATGAATTTTTTTGTGCACGCCAA
* * *
1292247 CAGAAATACAAGGACCATGTCTACCAAGTTTGGGGCCAAAACTCCCTCCTAAAAAATTTAAAAAA
450 CAAAAATACAAGAACCATGTCTACCAAGTTTGGGGCCAAAACTCCCTCCGAAAAAATTTAAAAAA
* * *
1292312 ATC-CTGAACTGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
515 ATCTC-GAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
1292376 CTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
579 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
*
1292441 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
644 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTC
*
1292506 TCTCTGGCCAGCATAGTGCCCGCCCGCCCGTC
709 TCTCTGGCCAGCATAATGCCCGCCCGCCCGTC
*
1292538 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGATTTCATTCCCA
1 CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
1292582 AACTAAGATT
Statistics
Matches: 706, Mismatches: 73, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
742 51 0.07
743 5 0.01
744 179 0.25
745 89 0.13
746 380 0.54
747 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (740 bp):
CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACAGAGTCCAT
TCCCAATCTAAGATCAAACCGGACCGAGGGTAGCGGCAGCACATGCTGGAATCAGGCATGTGCTG
GTGCCACATTTTACTTCGCCGGAGCACCATCGCCAGAGCATCGCCGGAGAACCTGACCAGCGGCA
TTGGGGTTCCGACGATAGGGGGGCCGAGGGGGTGTGAGCACATGATGTGCAAAGGGTACTGGTAC
TTGGCCCTTATATTGGCCCCCTACCCCTCAACAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGATGAATTTTTTTGTGCACGCCAACAAAAA
TACAAGAACCATGTCTACCAAGTTTGGGGCCAAAACTCCCTCCGAAAAAATTTAAAAAAATCTCG
AACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGG
CCAGCATAATGCCCGCCCGCCCGTC
Found at i:1292750 original size:26 final size:26
Alignment explanation
Indices: 1292721--1292773 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1292711 GTTAACTTAG
*
1292721 GCATAC-GAGGTTCATTCCCTGTCTAA
1 GCATACGGA-GTTCATTCCCAGTCTAA
*
1292747 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1292773 G
1 G
1292774 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1293649 original size:26 final size:26
Alignment explanation
Indices: 1293613--1293665 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1293603 GTTGACTTAG
*
1293613 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1293639 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1293665 G
1 G
1293666 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1294539 original size:26 final size:26
Alignment explanation
Indices: 1294509--1294561 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1294499 GTTGACTTAG
*
1294509 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
1294535 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
1294561 G
1 G
1294562 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:1295267 original size:902 final size:899
Alignment explanation
Indices: 1291796--1297229 Score: 7280
Period size: 902 Copynumber: 6.1 Consensus size: 899
1291786 TCCGCCTGCC
* * * * * *
1291796 TGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGCACACGGAGTTTAT
1 TGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* ** * *
1291861 TCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGTAGCACATGCTAGGTTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * *
1291926 GTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCAGTGGCA
131 GTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
** * *
1291991 TTGGGGTTTTGGCGATCGGGGGGGCCGAGGGGGTGTGAGCACATGATGTGCGATGGGTGCTGGTA
196 TTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * *
1292056 CTTGGCCCTTATGTTGGCCCCCTACCCCTCATCAAACCTCTAGAATTCACACCCCCCTTAAAGAG
260 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCCTTAAAGAG
*
1292121 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGAGG-CACTTTTT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG-GGACACTTTTT
*
1292185 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAG
388 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * *
1292250 AAATACAAGGACCATGTCTACCAAGTTTGGGGCCAAAACTCCCTCCTAAAAAATTTAAAAAAATC
453 AAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
* * *
1292315 CTGAACTGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
517 CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
* *
1292380 ACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAAAA
582 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAA
1292445 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
647 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
* * * *
1292510 TGGCCAGCATAGTGCCCG-C-CC-GCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAT
712 TGGCCAGCGTAGTGCCCGCCGCCTG-CCGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
** ** * * ** *
1292572 TTCATTCCCAAACTAAGATTGGACCAGAATGAGGGTTACGGCAGCAGGATCAACAGCACACAGAG
776 TTCATTCCCAGTCTAAGATCAGACCAGAATGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAG
* ** * * *
1292637 GGAGACCCGGTCGATCCCCGGCTTGCGCTTTCCGCCCCTCTGGCCGACTGAGCGCCCGCA
841 GGGGACCCACTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCG-CTGAGCGCCCGCA
* * * * *
1292697 CGCTCGTTCCATGGGTTAACTTAGGCATAC-GAGGTTCATTCCCTGTCTAAGCATATGGAGTTCA
1 TGCTCGTTTCATGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCTAAGCATACGGAGTTCA
* ** * * * *
1292761 TTCCCAGTCTAAGATCAGACCGGACGGAGGGTTTTGGCAGCACATGCTGTGCTCGGGCATATGCC
65 TTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* * * *
1292826 GGTGCCGCATTTTTCTTCACCGTGGCACCATCATCGGAGCATCGCCGGAGAACTTGACCGGCGGC
130 GGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* *
1292891 ATTGGGGTTCTGGCGATC-----GG---GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
195 ATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
1292948 CTTGGCCCTTATATTGGACCCCTATTCCTCATCAAACCTCATGAACTCACA-CCCCTTAAAGAGC
260 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
*
1293012 ATTTGAGATTTTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
325 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * *
1293077 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTTCATGCCAATAAAA
390 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
1293142 ATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTCAAAAATCCC
455 ATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT
1293207 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-GAGTCGTCTTGCCATGAAACTTCAC
519 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
* * *
1293271 GTGAAGGCTTAAGTGTCTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
584 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
* * *
1293336 ATGAAGATGTGCCTAAACCCTCCTATCACCCTATCGATCCACGGCTTGCGCATCCCGTCCCTCTG
649 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * *
1293401 GCCAACGTAGTACTCGCCCGCCCGCCAGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
714 GCCAGCGTAGTGCCCG-CCGCCTGCCGGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * ** * * * * *
1293466 CCATTCCTAGTCTAAGATCAGACCGGACCGAGTGTTGTGGTAGCAGGATCGACAGCACACAGA-T
777 TCATTCCCAGTCTAAGATCAGACCAGAATGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGG
*
1293530 GGGACCCGA-TCGATCC-CTGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCA
842 GGGACCC-ACTCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCA
** *
1293589 TGCTCGTTTCGGGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 TGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* ** *
1293654 TCCCAGTCTAAGATCGGATTGGACCAAGGGTTGC-AGCAGCACATGCTGGGCTCGGGCATGTGCT
66 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCT
* * ** *
1293718 GGGGCTGCATTTTTCTTTACCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGC
130 GGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* * * *
1293783 ATTGGGGTTTCGACGATCGGGTGGGCCAGGGGCTGTGCGCACATGATGTGGGAT-GGTGCTGGTA
195 ATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
1293847 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGC
260 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
* *
1293911 CTTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTC
325 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
1293976 AATTTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
390 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
1294041 ATACAAGGATCA---C-ATC-AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTT
455 ATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT
** * * * *
1294101 GAACCAAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCCTGCCATGAAACTTCAC
519 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
* * **
1294166 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGTACACAGAAAT
584 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
* * *** * *
1294231 ATGAAGATGTTCCTAAACCCACCTACCACCCTATCAATCCATATCTTGTGCATCCTGTCTCTCTG
649 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
1294296 GCCAGCGTAGTGCCCGACCGCCTGCCTGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
714 GCCAGCGTAGTGCCCG-CCGCCTGCC-GGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * *
1294361 TCATTCCCAGTCTAAGATCAGACCAGAATGGGGGTTGCGATAGCAGGATCGGTAGCACGCAGAGG
777 TCATTCCCAGTCTAAGATCAGACCAGAATGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGG
* * *
1294426 GGGACCCAACT-GATCCTCAGCTTGTGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCA
842 GGGACCC-ACTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCA
*
1294485 TGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTCAT
1 TGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * *
1294550 TCCCAGTCTAAGATCAGATC-GAGCTGAGGGTTACGACAGCACCTGCTGGGCTCAGGCATGTGCT
66 TCCCAGTCTAAGATCAGACCGGA-CCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCT
* * * ** * * *
1294614 GGTGCCACATTTTTCTTCGCTGAGGCACCATCATTGCAGCATCGCCAGAGAACTTGACCGGCGGC
130 GGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGC
*
1294679 ATTGGGATTCC-AGCGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
195 ATTGGGGTTCCGA-CGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1294743 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
259 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
* *
1294808 CATTTGAGATTTTATAGGTTTGCTGGCA-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * * *
1294872 CAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTACCTGAATTTTTTTATGCATGGCAACAAA
389 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
1294937 TATTCAAGGATCACGTCTACCAAGTTTGGGCCTAAAACTGCTTCCGAAAAAATTTTAAAAAATCC
454 AATACAAGGATCACGTCTACCAAGTTTGGGCC-AAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* ** ** * * * *
1295002 CGTTCCACAAAAATTTTCAAAAATCGTAAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCA
518 TGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
* * * **
1295067 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCACAAAAATGGCATTGGTACACAGAAA
583 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
* * *** * *
1295132 TATGAAGATGTTCCTAAACCCACCTACCACCCTATCAATCCATATCTTGTGCATCCTGTCTCTCT
648 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
1295197 GGCCAGCGTAGTGCCCGACCGCCTGCCTGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
713 GGCCAGCGTAGTGCCCG-CCGCCTGCC-GGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * *
1295262 TTCATTCTCAGTCTAAGATCAGACCAGAATGGGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAG
776 TTCATTCCCAGTCTAAGATCAGACCAGAATGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAG
* * *
1295327 GGGGACCCAACT-GATCCTCAGCTTGTGCATCCCGCCCCTCTGGCCAGCTGAGCACCCGCA
841 GGGGACCC-ACTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCA
1295387 TGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 TGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* *
1295452 TCCCAGTCTAAGATCAGACCGGACCGAAGGTTGCCACAGCACATGCTGGGCTCGGGCATGTGCTG
66 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * * *
1295517 GTGACGCATTTTTCTTTGTCGGGGCACCATCACTGGAGCATCACCGGAGAACCTAACCGGCGGCG
131 GTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
* *
1295582 TTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTTGCGCACATGATGTGCGGTGGGTGCTGGTA
196 TTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTG-TGCGCACATGATGTGCGATGGGTGCTGGTA
*
1295646 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
260 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
* * *
1295711 ATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGATACTTTTTTC
325 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
1295776 AAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
390 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
1295841 ATACAAGGATCACATCTACCATGTTCGAGGCCAAAACTCCTTCCGAAAAAATTTTACAAAAT-CT
455 ATACAAGGATCACGTCTACCAAGTTTG-GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT
**
1295905 GAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
519 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAC
** * *
1295970 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATGGCTTTGGCATGTAGAAAT
584 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAT
**
1296035 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTG
649 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
1296100 GCC-GACGTAGTG--C-CCG-CT--CGCCCGCTCGTTTCGTCAGTTGGCTTAGGCAAACGGAGTT
714 GCCAG-CGTAGTGCCCGCCGCCTGCCGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * *
1296158 CATTCCCAGTCTAAGATCAGACC-GAACTGAGGGTTGCGGTAGTAGGATCGGCAACATGTAGAGG
778 CATTCCCAGTCTAAGATCAGACCAGAA-TGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGG
** * * *
1296222 GGGACCCGGTCGAT-CTCTGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGTGCCCGTA
842 GGGACCCACTCGATCCTC-GGCTTGCGCATCCCGCCCCTCTGGCCG-CTGAGCGCCCGCA
* * **
1296281 CGCTCGTTTTATGGGTTGACTTAGATATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
1 TGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * * * **
1296346 TCCCAATCTAAGTTCGGATCGGATCGAGGGTTGCGGCAGCACATGC-GGCACTCTAGCATGTGCT
66 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGG-GCTCGGGCATGTGCT
* ** * * * *
1296410 GGTGCCGCATTTTTCTTCTCCAAGGCACCATCGCCGAAGCATCGCCGGAGAACTTGATCGGC-GC
130 GGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGC
* * * **
1296474 ATTAGGGTTCCGACGAT-GGGGCGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTATT
195 ATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
1296538 ACTAGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
259 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
* *
1296603 CATTTGACATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
324 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
** * * * *
1296668 TGAATGGTCACAAAATCTTGTACACCTCTAGTTTTTAGCTGAATTTTTTTGTGCCTACCAACAAA
389 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* ** * *
1296733 AATAAAAGGATCACGTCTACCAAGTTTGGGGTTAAAACTCCTTTCGAAAAAATTTTAAAAAATCT
454 AATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
* * *
1296798 TGAACCGTAAAAAGTTTCAAAAATCGTGAAGAATAGAAAATGAGTCGTCTTACCATGAAACTTCA
518 TGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
* ** * **
1296863 CGTGAAGGCTTAAGGTACCATTGTACAAATTTACGAGGTATAAAAATGGCATTGGCACGTAGAAA
583 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAA
* *
1296928 TATGAAGATGTG-CTGAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGCCTCTC
648 TATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
** * * * **
1296992 TGGCTGGCGTAGTGCCTGCC-CAC--CCGCCCGCTCATTTCGTCATTTGGCTTAGGCATACGGAG
712 TGGCCAGCGTAGTGCCCGCCGC-CTGCCGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* ** * * **
1297054 TTCATTCCCAGTCTAAGATCTGACTGGACTGAGGGTTGTGACAGCAGGATCGGCAGCACGTC-GA
776 TTCATTCCCAGTCTAAGATCAGACCAGAATGAGGGTTGCGGTAGCAGGATCGGCAGCACG-CAGA
* * * * **
1297118 GGGGGACCTGAC-CGATCCCCCGCTTACGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCA
840 GGGGGACC-CACTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCC-GCTGAGCGCCCGCA
* *
1297179 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 TGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1297230 ATCGAACCGG
Statistics
Matches: 4032, Mismatches: 437, Indels: 131
0.88 0.09 0.03
Matches are distributed among these distances:
889 161 0.04
890 229 0.06
891 2 0.00
892 322 0.08
893 374 0.09
894 561 0.14
895 248 0.06
896 267 0.07
897 174 0.04
898 219 0.05
899 209 0.05
900 28 0.01
901 191 0.05
902 895 0.22
903 148 0.04
904 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
TGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCA
TTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGA
ACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CAGCGTAGTGCCCGCCGCCTGCCGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCAGAATGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGA
CCCACTCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGCTGAGCGCCCGCA
Found at i:1295441 original size:26 final size:26
Alignment explanation
Indices: 1295411--1295463 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1295401 GTTGACTTAG
1295411 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1295437 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1295463 G
1 G
1295464 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1296336 original size:26 final size:26
Alignment explanation
Indices: 1296307--1296357 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1296297 TGACTTAGAT
*
1296307 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
1296333 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
1296358 TTCGGATCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:1299681 original size:26 final size:26
Alignment explanation
Indices: 1299645--1299723 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
1299635 GTTGACTTAG
*
1299645 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1299671 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1299697 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1299723 G
1 G
1299724 ATCGGACCGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1299857 original size:211 final size:211
Alignment explanation
Indices: 1299486--1299908 Score: 648
Period size: 211 Copynumber: 2.0 Consensus size: 211
1299476 GATTGGCTAG
* * * * * *
1299486 GCATACGGAGTTCATTCCCAGTTTTAGATCAGATCAGACCGAGGGTTACGGCAAGAGGATCGGTA
1 GCATACCGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAAGAGGATCAGTA
* * * * *
1299551 GCACGCAGAAGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGATCGC
66 GCACGCAGAAGGGGACCAGACCAATCCCCGACTTGAGCATCCCGCCCCTCTGGCCGACTGAGCGC
*
1299616 CCGCACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAG
131 CCGCACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAG
1299681 TTCATTCCCAGTCTAA
196 TTCATTCCCAGTCTAA
* * *
1299697 GCATACCGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTTCGACAAGAGGATCAGTA
1 GCATACCGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAAGAGGATCAGTA
* * * * *
1299762 GCACGCAGAGGGGGACCAGATCAATCCTCGGCTTGAGCATCCCGCCCCTCTGGCCGACTGAGCTC
66 GCACGCAGAAGGGGACCAGACCAATCCCCGACTTGAGCATCCCGCCCCTCTGGCCGACTGAGCGC
* *
1299827 CCGCACGCTCGATTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAAGCATACGAAG
131 CCGCACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAG
1299892 TTCATTCCCAGTCTAA
196 TTCATTCCCAGTCTAA
1299908 G
1 G
1299909 ATCGGATCGG
Statistics
Matches: 190, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
211 190 1.00
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.22
Consensus pattern (211 bp):
GCATACCGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAAGAGGATCAGTA
GCACGCAGAAGGGGACCAGACCAATCCCCGACTTGAGCATCCCGCCCCTCTGGCCGACTGAGCGC
CCGCACGCTCGATTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAG
TTCATTCCCAGTCTAA
Found at i:1299895 original size:26 final size:26
Alignment explanation
Indices: 1299859--1299908 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1299849 GACTTAGGCT
*
1299859 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAGTCTAAGCA
1299885 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
1299909 ATCGGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:1301505 original size:891 final size:887
Alignment explanation
Indices: 1299697--1302442 Score: 3767
Period size: 891 Copynumber: 3.1 Consensus size: 887
1299687 CCCAGTCTAA
* * * *
1299697 GCATACCGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT-TCGACAAG-AGGATCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGT-GAC-TGCAGGATCAG
* *
1299760 TAGCACGCAGAGGGGGACCAGATCAATCCTCGGCTTGAGCATCCCGCCCCTCTGGCCGACTGAGC
64 TAGCACGCAGAGGGGGACCAGATCGATCCTCGGCTTGCGCAT-CCGCCCCTCTGGCCGACTGAGC
* * *
1299825 TCCCGCACGCTCGATTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAAGCATACGA
128 CCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* * * * *
1299890 AGTTCATTCCCAGTCTAAGATCGGATCGGATCGAGAGTTACGGCAGCACATGCTGGGCTCGAGCA
193 AGTTTATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTAGGCTCGAGCA
* *
1299955 TGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACC
258 TGTGCTGGTGCCGCATTTTTCTTCGTC-GGG-----GCAT----GCATCGTCGGAGAACCTGACC
* * * * *
1300020 GGCGCCATTGGGGTTCCGGCGACCAGGGGGGCCGGGGGAAGGGGTGTGAGCACATGATGTGCGAT
313 GGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC---GG--GGGGTGTGCGCACATGATGTGTGAT
*
1300085 GGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCC
373 -GGTGCTGGTACTTGGCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CC
* * * *
1300150 CCTTAAAGTGCATTTGAGATTTTACA-GTTTGCTGCCAGTAGCCATTAAAATGTCTTATATGGGG
435 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * *
1300214 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTGTCCA
500 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCA
* *
1300279 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTTCGGAAAAAATT
565 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAAATT
* * * * *
1300344 TTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGCGCAAAATAGAAAACAAGTCGTCTTGCC
629 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
*
1300409 ATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
694 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
1300474 GCATGTAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATAGATCCACGGCTTGCGCAT
759 GCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
1300539 CCCTTCTCTCTGGCCGGCGTAGTGCCCGCCAGCCCGCCCACCCGTTCGTTTCGTCGGTTGGCTTA
824 CCCGTCTCTCTGGCC-GCGTAGTGCCTGCC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
1300604 G
887 G
* * * * * *
1300605 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGTGGCTGCAAGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGTGACTGCAGGATCAGTA
* * * * *
1300670 GCACGTAAAGGGGAACCAGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGC
66 GCACGCAGAGGGGGACCAGATCGATCCTCGGCTTGCGCATCC-GCCCCTCTGGCCGACTGAGCCC
* * * * * *
1300735 CTGCACACTCGTTTCGTGGGTTGACATAGGCATATGGAGTTCATTCCCAGTCTAAGCATCCGGAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAG
* * *
1300800 TTTATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGTACATGCTAGGTTCGAGCATG
195 TTTATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTAGGCTCGAGCATG
*
1300865 TGCTGGTGTCGCATTTTTCTTCGTCGGGGCAT-CATCGTCGGAGAACCTGACCGGCGGCATTGGG
260 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCATGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
*
1300929 GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGCTGCTGGTACTTGGA
325 GTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGG-TGCTGGTACTTGG-
* *
1300994 ACTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCGCCTTAAAGAACATTTGA
388 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCATTTGA
* *
1301059 GATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGG
452 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
1301124 TCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAA
517 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAA
* * *
1301189 GGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCG
582 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAATCCCGAACCG
* * *
1301254 TAAAAAGTTTCAAAAATCATGAAAAATAGTAAACGTGTCGTCTTGCCATGAAACTTCACGTGAAG
647 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
1301319 G-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
712 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
*
1301383 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCCTGCGCATCCCGTCTCTCTGGCCGAC
777 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-C
*
1301448 GTAGTGCCTGCTCGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAG
841 GTAGTGCCTGC-CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
1301496 GCATACGGAGTTGATTCCCAGTCTAAGATCAGG-CTAGGCCGAGGGTTGCGACTGCAGGATCAGT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCAGACCGAGGGTTGTGACTGCAGGATCAGT
* * * * * *
1301560 ACCACGCAGAGGGGGACCTGATCGATCCTCGGCTTGCGCAGCGCACCCCTCTAGTC-AGCTGAGC
65 AGCACGCAGAGGGGGACCAGATCGATCCTCGGCTTGCGCATC-CGCCCCTCTGGCCGA-CTGAGC
* *
1301624 CCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCATTCTAAGCATACGA
128 CCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGA
* * * * * *
1301689 AGTTTATTCCCAGTCTAAGATCAGACTGGACCAAAGGTTACGACAGCACATGCTAGGCTCGGGCA
193 AGTTTATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTAGGCTCGAGCA
* * *
1301754 TGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACC
258 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA---T----GCATCGTCGGAGAACCTGACC
* * * * *
1301819 GACGGCATTGGGGTTCCGGTGATCGGGGGGGTCGGAGGGTGTGCGCACATGATTTGTGATGGTGC
313 GGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGTGC
* * *
1301884 TGGTACTTGGCCCTTATATTGGTCCCGTATCCCTCATCAAACCTCGAGAACTCTCACCCCGTTAA
378 TGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAA
* *
1301949 AGAGCATTTCG-GATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACATT
441 AGAGCATTT-GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
1302013 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCA-CTAAATTGTTTTGTGCATGCC
505 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAATTGTTTTGTGCATGCC
* *
1302077 AACAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAACACCTTCGAAAAAAATTTTAAA
569 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATTTT-AA
* *
1302142 AAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
633 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
1302207 AACTTCAGGTGAAGGCTTAAGGGACCATTGCTTTGAATTTACAAGCCATAGAAATGGCATTGGCA
698 AACTTCACGTGAAGGCTTAAGGGACCATTG-TATGAATTTACAAGCCATAAAAATGGCATTGGCA
** ** *
1302272 CATAGAAATATGAAGATGTGATTAAACCCACCTACCACCCTATCGA-CAAACGGCTTGCGCATCC
762 TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC-CACGGCTTGCGCATCC
* *
1302336 CGTCTCTCTGGCCTGCGTAGT---TCCCG-CCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
826 CGTCTCTCTGGCC-GCGTAGTGCCTGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * *
1302395 GCATACAGAGTTCATTCCCAGTCTAAGATCA-GATCAGGCCGAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-AGGACCAGACCGAGGGTTG
1302443 CGATAGCACA
Statistics
Matches: 1643, Mismatches: 163, Indels: 73
0.87 0.09 0.04
Matches are distributed among these distances:
890 2 0.00
891 409 0.25
892 191 0.12
893 143 0.09
894 4 0.00
897 50 0.03
898 1 0.00
899 73 0.04
900 4 0.00
901 237 0.14
902 155 0.09
903 15 0.01
904 107 0.07
905 1 0.00
907 6 0.00
908 244 0.15
909 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGTGACTGCAGGATCAGTA
GCACGCAGAGGGGGACCAGATCGATCCTCGGCTTGCGCATCCGCCCCTCTGGCCGACTGAGCCCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGT
TTATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTAGGCTCGAGCATGT
GCTGGTGCCGCATTTTTCTTCGTCGGGGCATGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
TTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGTGCTGGTACTTGGCCT
TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGAT
CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATTTTAAAAAATCCCGAACCGTAAA
AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGCGTAGT
GCCTGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:1301692 original size:26 final size:26
Alignment explanation
Indices: 1301655--1301707 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1301645 GTTGACTTAG
* *
1301655 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1301681 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1301707 G
1 G
1301708 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1303292 original size:26 final size:26
Alignment explanation
Indices: 1303256--1303308 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1303246 GTTGACTTAG
*
1303256 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGCCTAA
1303282 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATATGGAGTTCATTCCCAGCCTAA
1303308 G
1 G
1303309 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGCCTAA
Found at i:1304192 original size:26 final size:26
Alignment explanation
Indices: 1304155--1304207 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1304145 GTTGACCTAG
* *
1304155 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1304181 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1304207 G
1 G
1304208 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:1304424 original size:899 final size:896
Alignment explanation
Indices: 1302395--1321517 Score: 12522
Period size: 878 Copynumber: 21.4 Consensus size: 896
1302385 GTTGGCTTAG
* **
1302395 GCATAC-AGAGTTCATTCCCAGTCTAAGATCAGATCAGG-CCGAGGGTTGCGATAGCACATGCTG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGA-CCGGACCGAGGGTTGCGGCAGCACATGCTG
** * * *
1302458 GGCTCGGGCATGTGCTGGTGCCATATTTTTCTTTGCCGGGGCACCATCGTCGGAG-AACCT---G
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCTGGAG
** * * *
1302519 -ACC-GA---CGGCATTGGGGTTTTGACGATCAGGGGGGCCGGGGAGGTGTACGCACATGATGTG
129 AACCTGACCGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
1302579 CGATAGGTGCAGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAT
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1302644 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
1302709 TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTAG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTTTG
* * * *
1302774 -GCATGCCAACAAAAATACAAGGATCACATCTA-AAACGTTTGGGGCCAAAACACCTTCCG-AAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTTCGAAAA
* * * *
1302836 AATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
1302901 TGCCATGAAGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * *
1302966 ATTGGCATGTAGAAATATGAAGATGGGCCTAAACCGACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * ** * * * *
1303031 GCATCCCGTCTCTCTGGCCGATGTGGTGTTCGCCTGCCCGTCCGCTCATTTCATCGGTTGGCTTA
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTG-CCGCTCGTTTCGTCGGTTGGCTTA
* * * ** * * * *
1303096 GGCATAC-AACATTTATTCCCAGTCTAAGATTGGCCCAGACCAAGGGTTGCAGCAGTAGGATCGG
711 GGCATACGGA-GTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAGGATCGG
* * * ** * * * * * * *
1303160 TAGCACGTAGAGGCAGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCTTCTAGTCGGCTGAAC
775 CAGCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
1303225 CCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
840 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1303282 GCATATGGAGTTCATTCCCAGCCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** * * *
1303347 CTCGAGCATGTGCTTGTGCCACATTTTTATTCCCCAGGGCACCATCGTCGGAGCAACGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-CTGGAGA
* * * ** * *
1303412 ACTTGACCGGTGGCATTAGGGTTCCGGTGATCGAGGGGGCCGGGGGGGTGTGCACACATGATGTG
130 ACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
** *
1303477 CGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
1303542 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1303607 GGGGACACTTTTTTCCAATGGTCACAAAATCTTGTACACATTGCGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTGAGTTTTTAGCTGAATTTTTTTG
* * * **
1303672 TGCACGCCACCAAAAATACAAGGATCATGTCTACCAAGTTTGGGGAAAAAACTCCTTTCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* *** ** * *
1303737 ATTTTGAAAAATCCCGAACTACAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
1303802 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
1303867 TTGGAACATAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGGCTTGCG
583 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * *
1303932 CATCCCGTCTCTCCGACCGGCATAGTGCCCGCCCGCCTGTCCGATCGTTTCATCAGTTAGCTTAG
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTG-CCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
1303997 GCATACGGAGTTCATTCCCAATCTAAGATCCGACTGGACCGAGGGTTGCAGCAGTAGGATCGGCA
712 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAGGATCGGCA
* * * ** *
1304062 GCACGCAGAGGAGGACCCGATCAATCCCTGGCTTGCGCATCTTGCCCCTCTGGCCGGCTAAGC-C
777 GCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * * * *
1304126 CCGTACACTCATTTCGTAGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1304181 GCATACGAAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1304246 CTCGGGCATGTGCTGGTGCCGCATTTTTATTCATCGAGGCACCATCGCCGGAGCATCACTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-CTGGAGA
* * * * *
1304311 ACTTGACTAGCAGCATTGGGGTTTCGACGATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGTG
130 ACCTGAC-CGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
1304376 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
1304441 ACCCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
1304506 GGAGACACTCTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTGTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTTTG
* * *
1304571 TGCATGCCAACAAAAATACTAGGATCACGTCTACTAAGTTTGGAGCCAAAACTCCTTTCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * *
1304636 ATTTGAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
1304701 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
1304766 TTGG-A-ATGCAAAAATATGAAGATGTACCTAAACCCACCTACAACCCTATCGATCCACGGCTTG
583 TTGGCACAT--AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * * * *
1304829 CGCATCCCGCCTCACTGGCTGGCATAGTACCCTCTCG---GCCACTCGTTTCGTCGGTTGGCCTA
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCGCTCGTTTCGTCGGTTGGCTTA
*
1304891 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCAGACCGAGGGTTG-TGACAGCAGGATCG
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGCAG-CAGCAGGATCG
* * *
1304954 ACAGCATGCAGAGGGGGACCCGATCGAT-CCTCGGCTTGCGTATCCCGCCCCTCTGGCCGACTGA
774 GCAGCATGCAGAGGGGGACCCGATCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
1305018 GCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCCTTCCCAGTCTAA
838 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
1305077 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * *
1305141 GCTTGGGCATGTGCTGGTGTCGCATTTTTCTTGGCCAGGGCACCATCGTCGGAGCATCGTCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCT-GGAG
* * * *
1305206 AACCTGACCGACGGCATTGGGGTTACGCCGATCGGAGGGGTCGAGGGGGGGTGTGCGCACATGAT
129 AACCTGACCG-CGGCATTGGGGTTCCGACGATCGG-GGGGGC-CGGGGGGGTGTGCGCACATGAT
*
1305271 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * *
1305336 CACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGAAGCCACTAAAGTGTTTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
1305401 AATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTCTT
321 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATT-TT
* * * **
1305465 TTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAAC-GATTTCTG
384 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-G
* **
1305529 AAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTTGAAAATCGTGAAAAATAG-AAACGAGTC
448 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
1305593 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAA
513 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
1305658 TGGCATTGGAACATAAAAATATGAAGATGTGCCGAAACCCACCTACAACCCTATCGATCCACGGC
578 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * * *
1305723 TTGCGCATCCCGCCTCACTGGCTGGCATAGTACCCTCTCG---GCCACTCGTTTCGTCGGTTGGC
643 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCGCTCGTTTCGTCGGTTGGC
* * *
1305785 CTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGA-TCAGACCGAGGGTTG-TGACAGCAGGA
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGCAG-CAGCAGGA
** * *
1305848 TCAACAGCATGCAGAGGGGGACCCGATCGAT-CCTCGGCTTGCGTATCCCGCCCCTCTGGCCGAC
771 TCGGCAGCATGCAGAGGGGGACCCGATCGATCCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
1305912 TGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
1305974 GCATACGGAGTTCATTCCCAGTCTAGGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGC
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
1306039 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGTAGCGTCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-CTGGAGA
* ** * * *
1306104 ACCTGACCGACAGCATTGGGGTTCCGGGTGATCGGGGGGGCTGGGGTGGTGTGCGCACCTGATGT
130 ACCTGACCG-CGGCATTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
1306169 GCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCGT-GAGAACTG
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTC
* * * *
1306233 ACACTCCCTTAAAGAGCATTTGACATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** * * *
1306298 ATATGGAGACATTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTGAGTTTTTAGCTGAATTTTTT
* ****
1306363 TGTGCATGCCAATAAAAATACAAGGATCACGTCTACTTTTTTTGGGGCCAAAACTCC-TTCAGAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAA
* * *
1306427 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
1306492 CTTGCCATCAAACTTCACGTGACGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1306557 GCATTGGCAC-TAAAAAATATGAAGATGTACCTAAACCCACCGACCACCCTATCGATCCACGGCT
580 GCATTGGCACAT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
1306621 TGCGCATTCCGTCTCTCTAGCTGACGT-GTGCCCGCCCG-C--CCGCTCGTTTCGTCGGTTGGCT
644 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCGCTCGTTTCGTCGGTTGGCT
* * * *
1306682 TAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA-TCAGACCGAGGGTTGCATCGGCAAGATC
709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGCAGCAGCAGGATC
** ** * * * * * *
1306746 AACAGCACACA-AGGGGGACCTGATCTATCCCCGGCTTGCGCATCCCACCCATCTGGCCCGCTGA
773 GGCAGCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * ** * * *
1306810 GCACCTGCACGCTCATTTTAATGGGTTGACTTAAGCATACTGAGTTCATTCCCAGTCTAG
838 GCACCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1306870 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCTAGGGTTGCGGCAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* *
1306934 GCTCGGGCATGTGCTGGTGCCACAATTTTTCATT-GTCGGGGCACCATCGTCGGAGCATCGTCGG
65 GCTCGGGCATGTGCTGGTGCCGC-ATTTTTC-TTCGTCGGGGCACCATCGTCGGAGCATCCT-GG
* * * *
1306998 AGAACCTGACCGACGACATTGGGGTTACGACGATCGGGGGGTCGAGGGGGGGTGTGCGCACATGA
127 AGAACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGGGTGTGCGCACATGA
*
1307063 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGC
190 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
1307128 TCACACCCCCCTTAAAGAGCATTTGAGATTTTAACAGG-TTGCTGCCAGGTAAGCCATTAAAGTG
255 TCACA-CCCCCTTAAAGAGCATTTGAGATTTT-ACAGGTTTGCTGCCA-GT-AGCCATTAAAGTG
* * *
1307192 TTTGAAATGGGGACACTTTTTTCAAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTTA
316 TCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGA
* * *
1307257 A-TTTTTTATGCATGCCAA-AAAAATACAAAGGATCCACATCTTTCCAAGTTTTGGGGCCAAAA-
379 ATTTTTTTGTGCATGCCAACAAAAATAC-AAGGAT-CACGTC-TACCAAG-TTTGGGGCCAAAAC
* * *
1307319 T-CTTGTCGAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTATCGAAGATCGGTGAAAAATA
440 TCCTT-TCG-AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC-GTGAAAAATA
1307383 GAAAACGAGTCGTCTTGGCCCAATGAAAC-TCACGTGAAGGCTTAAGGGACACATTGTATGAATT
502 GAAAACGAGTCGTCTT-G-CC-ATGAAACTTCACGTGAAGGCTTAAGGGAC-CATTGTATGAATT
** ** *
1307447 TACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTTGCGAAAACCCATCTACCAC
563 TACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATG-TGCCTAAACCCACCTACCAC
* *
1307512 CCTATCGATCGCACGGCTTGCGCATCTCGTCTCTCTGGTCGGCGTACGTGCCCGCGCGCCGTCCG
627 CCTATCGATC-CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA-GTG-CC-CGC-CCG-CC-
* * * * * * * *
1307577 CGCCGCTCGTTTCATCAGTTGGCTTAGTCATATGGAGGTCATTCCTAGTCTAAGATCAGACCAGA
685 TGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGA
* * * ** ** * *
1307642 TCGAGGGTTGC-GATAGTAGGATCGATAGCACACAGAGGGGGATCCGATCGATCCCCGGCTTGCG
750 CCGAGGGTTGCAG-CAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCG
* * *
1307706 CATCCCGCCCGTCTGGCCAGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC--
814 CATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
1307769 -G---A-----AG--T--
879 AGTTCATTCCCAGTCTAA
* * * **
1307774 ---T-C--AG-----TCCCAGTTTAAGATCAGACCGGGCCGAGGGTTGTGGCAGCACATGCACGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
1307828 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCA---TC---G----CTGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCTGGAGAA
* * *
1307883 CCTGACCGACGGCATTGGGGTTCCCAGTGATCGGGGGGGCC-GGGGGGTGTGCACACATGATGTG
131 CCTGACCG-CGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
1307947 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAATCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
1308011 ACCCCTTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1308076 GGGGACACTTTTTTCAAATGGTCACCAAGTCTTGTACACTTTGAGTTTTTAGCT-AATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTGAGTTTTTAGCTGAA---TTTTT
* * ** * *
1308140 TTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGCAGCAAAAACTCC-TCCGAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* ** *
1308204 AAAATTTTAAAAAAATCCCGAACCGT-AAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTTG
450 AAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
1308268 TCTTGCCATGAAACTTCATGTAAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
1308333 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCAACCACCCTATCGATCCACGGCT
579 GGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
1308398 TGCGTATCCCGTCTCTCTAGTCGACGTAGTGCCCG-CCGCCTGCCCGCTCG-TTCGTCGGTTGGC
644 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTG-CCGCTCGTTTCGTCGGTTGGC
** * * ***
1308461 TTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGGTCGGA-CTAGGGTTATGGCAGCAGGAT
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACCGAGGGTTGCAGCAGCAGGAT
* * * * *
1308524 TGGCAGCATGCACGAGGGGGACCTGA-CTGATCCCTGGCTTGCGCATCCCACCTCTCTGGCTGGC
772 CGGCAGCATGCA-GAGGGGGACCCGATC-GATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
1308588 TGAGCGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
835 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1308650 GCATACGAAGTTCATTCCCAGTTTATGATCAGACCGGACTGAGGGTTACGGCACCACATG-TCGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT-GG
* * * * * * *
1308714 GCTTGGTCTTGTGTTGGTGCCGTATTTTTCATCATCGGGGCACCATCGTCGGAGCATTGCC-GGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA-T-CCTGGA
*
1308778 GAACCTGACCAGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCACACATGATG
128 GAACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
*
1308842 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATC-AACCTCAAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
1308905 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
1308970 ATGGGGACACTTTATTCAAATGGTCACAAAATCTTATACACTTCGAATTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTT
* * *
1309035 TGTTCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTTCG-AA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
*
1309099 AAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * * *
1309164 TTGCCACGAAACTTCATGTGAAGGCTTAAGGGACCATTCTATCAATTTAACAA-ACATAAAAATG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT-ACAAGCCATAAAAATG
*** *
1309228 GCATTGGCATGCAGAAATATGAAGATGT-CCTAAACCCAACTACCACCCTATCGATCCACGGCTT
580 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * *
1309292 GCGCATCTCGCCTCTCTGGCCGGCGTATTGCCTGCCCACCCGCCCGCTCGCTTCGTCGGATGGCT
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTG-CCGCTCGTTTCGTCGGTTGGCT
* ** ** *
1309357 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCAGCAGCAGGATTG
709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAGGATCG
* * ** * *
1309422 GTAGCATGCAGAGGGGGACCTGGCCGATCTCCAT--CTTACGCATCCCGCACCTCTGGCCGGCTG
774 GCAGCATGCAGAGGGGGACCCGATCGATC-CC-TGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
1309485 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
837 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
1309545 GCATACAAAGTTCATTCCGAGTCTAAGATCATATCAGATCGAGGGTTGTGGCAGCCCATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
1309610 TTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-CTGGAGA
* * * *
1309675 ACCTGATCGACGGCATTGGGGTTCCGAAGATCGGGGGGGCCGAGGGGGTGGGCGCACATGATGTG
130 ACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
1309740 TGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAATAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
1309805 CCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** * *
1309870 GGGGACACTTTTTTCAAATGGTCACAAAAAATTGTACACTTCGAGTGTTTAGCTAAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTTTG
* * *
1309935 TGCATGCCAATAAAAATACAAGGATCCCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * ** * *
1310000 ATTTTAAAAAATCCTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAATCGTCTT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* **
1310065 GCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
1310130 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTG
583 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
1310195 CATCCCGCCTCTCTGGTCGACGTAGTGCCCGCCCGCCCTCCCGTCCGCTCGTTTTGTCGGTTGGC
648 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCT---G-CCGCTCGTTTCGTCGGTTGGC
** * * * ** * *
1310260 TTAGGCATACAAAGTTCATTCCAACTCTAAGATCGGACCGGATCACGA--GTTGCAGCAGCTGAA
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGA-C-CGAGGGTTGCAGCAGCAGGA
* * * *
1310323 TTGGCAGCATGCAGAGGGGGATCCGATCGATCTCC-GGCTTGCGCAT-CC-ACCCTCTGGCTGGC
771 TCGGCAGCATGCAGAGGGGGACCCGATCGATC-CCTGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* ** * * * *
1310385 TGAGCGCCCGCACTTTCATTTCATGGGTTGACTTAGGCACACGGAGTTCATTCCCAGTCTCA
835 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * *
1310447 GCATACAAAGTTCATTCTGAGTCTAAGATCAGACTGGACCAAGGGTTGTGGCAGCCCATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * ** * *
1310512 TTCGGGTAGGTGCTGGAGTCGCATTTTTCTTCGCCGGGGCATAATCGTCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCT-GGAGA
* *
1310577 ACCTGA-CGACGGCATT-GGGTT-CGGCGATC-GGGGGGCCGGGGGGGGTGTGTGCACATGATGT
130 ACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
1310638 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC------------------------------
*****************************************************************
1310703 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
228 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*****************************************************************
1310768 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
293 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
*****************************************************************
1310833 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
358 TACACTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
*****************************************************************
1310898 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
423 AAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
*****************************************************************
1310963 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
488 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*****************************************************************
1311028 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
553 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCC
*****************************************************************
1311093 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
618 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
*****************************************************************
1311158 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
683 CCTGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTA
*****************************************************************
1311223 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
748 GACCGAGGGTTGCAGCAGCAGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGC
*****************************************************************
1311288 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
813 GCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*******************
1311353 NNNNNNNNNNNNNNNNNNN
878 GAGTTCATTCCCAGTCTAA
*****************************************************************
1311372 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*****************************************************************
1311437 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCTGGAGAA
*****************************************************************
1311502 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
131 CCTGACCGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
*****************************************************************
1311567 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
***************************************** * ** *
1311632 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT-CCCAGTCTAAA-AATC--ATA-
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-T-TAAAGTGTCTGAAAT
** **** * ** * ** ** * * *
1311692 CCGGAC-CGAGGTT---ATGG-CAGC-ACATAC-TGGGCTCGGGCATGTCCTGGTACCCGTATTT
324 GGGGACACTTTTTTCAAATGGTCA-CAAAAT-CTTGTACACTTG-A-GT--TTTTAGCTGAATTT
* * * * ** ** ** * ** * *
1311750 TTCTTCAT-CAGGGCACCATCGCCGGAGCAT-CGTCGGAGAACCTGACTGGC-GGCATTGGGGTT
383 TT-TT-GTGCA-TG--CCA---AC-AAAAATAC-AAGGATCA-C-GTCTACCAAG-TTTGGGG--
* * ***** ****** * ** ** * * ** *
1311812 CTGGC-GATCGGGGGGGTCAGGCGGGGTGTGCCTTACATGATGTGCGATGGCTGCT-AGTACTTG
433 C---CAAAAC--TCCTTTC-GAAAAAAT-T---TTAAAAAAT-CCCGA--ACCG-TAAAAAGTT-
* ** * * ***** ***** ** * * *
1311875 GCCCTTATATTG-GCTCCCTATCCCTC-A-TCAAACCTTG--A-GAAACTCACACCCCCTTAAGA
483 --TCAAAAATCGTGAAAAATAGAAAACGAGTC--GTCTTGCCATGAAACT-TCA---CGTGAAG-
* * ** * * * * * * * * *
1311934 GCATT-TGAGA-TTTTTTATG-TTTGCTGCTAGTAGTCATTAAAGTGTCTGAAATGGGGACACT-
539 GC-TTAAGGGACCATTGTATGAATT--TAC-A--AGCCATAAAAATG---G-CATTGGCACA-TA
** * * * * * * * *** * * * ** * ** *
1311995 --TTTTTCAA-ATG-GTCACAAAATCTTGTACACTTTCGAGTTTTTAGCTGAATTGTTTTTGTGC
593 GAAATATGAAGATGTG-C-CTAAA-C----CCACCTACCACCCTATCGATCCA-CG-GCTTGCGC
* ** * ** *** * * ** * ** ** **** * *
1312056 ATGCCAACAAACAAT-AAAGG-AT-GATGTCTACCAAGTTTGGGGC-CAAAAC-TC--TT-TCTG
649 ATCCCGTC--TCTCTGGCCGGCGTAG-TGCCCGCC-CGCCTGCCGCTCGTTTCGTCGGTTGGCTT
** *** *** * * * * * * **** * **
1312113 A-AAATATTTTA-AAAAATCCCGAATGCCAAGAAGTTTTCAAAATAG--TGAAAAAT--A-AAAA
710 AGGCATA-CGGAGTTCATTCCC-AGT-CTAAG-A----TCAGACTAGACCGAGGGTTGCAGCAGC
* * * * *** *
1312171 ATGAGTCGTCTTGCATG-A-A-----ACTTC-A-CG-T-GAAGGCTTGCGCATCCTGCCCCTCTG
767 AGGA-TCGGC-AGCATGCAGAGGGGGAC-CCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTG
* * * * * * * *
1312225 GTCTGCTGAGCGCCCGAACACTTGTTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAATC
829 GCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
1312290 TAA
894 TAA
* * * * * * *
1312293 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGATGGTTGCGGCAGCACATGTTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
1312358 CTCGGGCATGTGCTAGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-CTGGAGA
* * * * * * *
1312423 ACCTGACCAACGGTATTAGGGTTCCGATGATCGGGGGGGCCGGGGTGGGTATGCACACATGATAT
130 ACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGT
* * *
1312488 GCGATGGGTGCTGGGACTTGGCCCTGATATTGATCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTG-GCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
1312553 ACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1312618 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTGAGTTTTTAGCTGAATTTTTT
* * *
1312683 TGTGCATGCCAACAAAAATA-TAGGCATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
386 TGTGCATGCCAACAAAAATACAAGG-ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * * * * * *
1312747 AACATTTTAAAAAATCTCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAATGATTCAT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
1312812 CTTGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
1312877 GCATTGGCACACAGAAATATGAAGATGTGCCCAAACCCACCTACCACACTATCAATCCACGGCTT
580 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
1312942 GCGCATCCCGTCTCTCTCGCCGGTGTAGTGCCCGCCCG-CTCGCTCGCTCGTTTTGTTGGTTGGC
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCT-GC-CGCTCGTTTCGTCGGTTGGC
** * * * * *
1313006 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGGC-CGAACCGAGGGTTGCAGTAGTAAGAT
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAG-ACCGAGGGTTGCAGCAGCAGGAT
* ** * * ** * *
1313070 CAGCAGCACACAAAGGGGGACCCGATCTATCCCCAGCTTGCGCATCACGCCCCTCTAGCCGGCTG
772 CGGCAGCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * * *
1313135 AGCGCCCGCACGCACATTTCGTTGGTTGACTTAGGCATACGGACTTCATTCCCAGTCTCA
837 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** * * *
1313195 GCATACGGAGTTCATTGCCAGTCTAAGATCGGACTAGATCGAGGGTTGCAGCAGCACATGTTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** *
1313260 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-CTGGAGA
* * *
1313325 ACTTGACCGACGGCATTAGGGTTTCGACGATCGAGGGGGG-CGGGGGGGTGTGCGCACATGATGT
130 ACCTGACCG-CGGCATTGGGGTTCCGACGATCG-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
** * *
1313389 GTC-ATGGGTGCTTTTACTTGACCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTC
193 G-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
1313453 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1313518 ATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTT
* * * ** *
1313583 TGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACTAAGTTTGGCACCAAAACGCC-TTCGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AA
* * *
1313647 AAAATTTTAAAAACTCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAATATAAAAAACGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
1313712 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1313777 GCATTGGCACATAGAAATATGAAGATGTACCGAAACCCACCTACCACCCTATCGATCCACGGCTT
580 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * * * ** **
1313842 GCTTATCCCGTCTCTCTGGCTGGCGTAGTGCCCGGCCG-CT--TGCTCTTTTCGTCAATTGTTTT
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCGCTCGTTTCGTCGGTTGGCTT
** ** ** ** * **
1313904 AGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGTGGTAGCAGGATCAA
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAGGATCGG
* * * * * * * * * * *
1313969 CAGCACGTAGAGGGGGACTCGATTGATCCTTAGCCTGCGCATCCCACCCCTCTGGTCGGCGGAGT
775 CAGCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * * ** * **
1314034 GCCCGTATGCTAATTTCGTGGGTCGACTTAGGCATATAGAGTTCATTCCCAGTCTAA
840 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * * **
1314091 GCATACGGGGTTCATTCCCAGTCTAAGATCGGATCGTAACGAGTGTTGCGACAGCACATGCAAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1314156 CTCGGGCAAGTGCTGGTGTCGTATTTTTTCTTCGTCGGGGCACCA---T-----CA--CTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCA-TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCTGGAGA
* * *
1314211 ACCTAATCGGCGGCATTGGGCTTCCGACGATC-GGGGGG-C-GGGGGGTGTGCGCACATGATGTG
130 ACCTGA-CCGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
1314273 CGATGGGTGCTGGTACTTGGCCTTTATACTGGCCCCCTATCCCTCATCAAGCCTCGAGAACACAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
1314338 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCGTTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
1314403 CGGGACACTTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGGGTTTTTAGCTG-ATTTGTTT
324 GGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTT-TTT
* *
1314467 TGTGCATGCCAACAAAAATACAAGGATCGCGTCTACCAAGTTTGGAGCCAAAACTCC-TTCTGAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAA
* * * *
1314531 AAACTTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
1314596 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACGAGACATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1314661 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTT
580 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
1314726 GCGCATCCCGTCCCTCCGGCCGACGTAGTGCCCGCCCG-C--CCTCTCGTTTTGTCTGTTGGCTT
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCGCTCGTTTCGTCGGTTGGCTT
* * * ** * *
1314788 AGGCATATGGAGTTCATTCCCAGTCTAAGATC-GAACCAAATAGAGGGTTGCGGCAGCAGG-TTG
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTAGACCGAGGGTTGCAGCAGCAGGATCG
** * *
1314851 GCAGCACACAGA-GGGGACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAG
774 GCAGCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
1314915 CACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
1314973 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGATCTGTACCGAGGGTTACGGCAGCACATGCTAG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CCGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** ** ** *
1315037 GCTCGAGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCACCGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCT-GGAG
* * * * * *
1315102 AACCTAACCGGACAGCATTAGGGTTCCAACGATCAGGGGGGCC-GGGGGGTGTGCGCACATAATG
129 AACCTGACC-G-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
1315166 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
1315231 ACACCTCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1315296 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTT
* *
1315361 T-TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
**
1315425 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
1315490 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * **
1315555 CATTGGCATGTAGAAACAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTTG
581 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
1315620 CGCATCCCATCTCTCTGGCCGGCGTAGTGACTGCCCGCCCGCCCT-CTCACTCGTTTCATCGGTT
646 CGCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCG-CCTGC-CGCTCGTTTCGTCGGTT
* ** * * * * * *
1315684 GGCTTAGGCATACGAAGTTCATTCCTTGTCTAAGATCACACCAGACTGAGGGTTACGGTAGCAGG
705 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAGG
* * * * * *
1315749 ATCGGTAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCTCATCCCGCCCCTCTGGTCGAC
770 ATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* ** **
1315814 TGAGCGCATGCACGCTTATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
835 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1315872 -C-T---AAG---A-T--C-G-----GAT-----CGGACTGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
1315915 CACGGGCATGTGTTGGTACCACATTTTGCTTCGTCGGGGCACCATCG-CGGGGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-CTGGAGA
* * * * * *
1315979 ACCTGACCGACGGCATTAGGGTTCTGGCGATCGGAGGGCCCGGGGGGGGTGTGCACACATGATGT
130 ACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
*
1316044 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
1316109 CACCTCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1316174 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTTT
* *
1316239 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAACTCCTTTCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * *
1316304 AATTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGTAAACGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
1316369 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
1316434 ATTGGCACGTAGAAACAAGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACAGCTTGC
582 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * ** *
1316499 ACATCCCATCTCTCTGGCCGGTGTAGTGCCTGCCCGTCCACCCTCTAGCTCGTTTCGTCAGTTGG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-TGC-C--GCTCGTTTCGTCGGTTGG
* * * *
1316564 CTTAGGCATACGGAGTTCATTCCCTA-TCTAAGATCACACTAGACTGAGGGTTGCGGTAGCAGGA
707 CTTAGGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAGGA
* * *
1316628 TCGGTAGCATGCAGAGGGGGACCCGACCGATCCCTGGCTTGCTCATCCCGCCCCTCTGGCCGGCT
771 TCGGCAGCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * **
1316693 AAGCGCACGCACATTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
836 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1316750 -C-T---AAG---------A-TC---G----GACCGGACTGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
1316793 CTTGGGCATGTGCTGGTACCTCATTTTGCTTCGTCGGGGCACCATCG-CGGGGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-CTGGAGA
*
1316857 ACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGAGGGGGTGTGCGCACATGATGT
130 ACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGT
* *
1316922 GTGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCGT-GAGAACTC
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTC
1316986 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
1317051 ATGGGGACACTTTTTTCAAATGGTCCCAAACTCTTGTACACTTCGAGTTTTTAGCGGAATATTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTT
* * * * * *
1317116 TGTTCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCTAAAA-TAGCTTCCGAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTTCGAA
* * *
1317180 AAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
1317245 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*** *
1317310 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGGCTT
580 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * *
1317375 GCACATCCTGTCTCTCTGGCCGACGTAGGGCCCGCCCGCCCGCTCGCTCCTTTCGTCAGTTGGTT
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGC-CGCTCGTTTCGTCGGTTGGCT
* ** * * * *
1317440 TAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAAGATCG
709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAGGATCG
* * * * * * *
1317505 ACAGCACGCAGAGAGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAG
774 GCAGCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
1317570 CGCCCGCATGGTCGTTTCGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAA
839 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1317628 G-AT-C--AG---------A--C----A--AGACC--A---AGGGTTGC-GCTAGCACATGCTGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGC-AGCACATGCTGG
* * ** * * *
1317666 GCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACAATCGTCGGAGCATTGCAGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA-TCCTGGAG
* * * * *
1317731 AACCTGATCGACGACATTGGGGTTCTGACGATCGGGGGGGCC-GGGAGGTGTGTG--CAT-ATGT
129 AACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
1317792 ----T--GTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
1317850 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** * *
1317915 TGGTTACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTTT
* * * * *
1317980 GTGCATGCCAAAAAAAAACACAAGGATCACATCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAA
387 GTGCATGCC-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * *
1318045 AAATTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTG
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
1318110 TTGCCATGAAACCTCACGTGAAGGCTTAAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*** * *
1318175 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCATG
581 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
1318240 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--T-CTGCTCATTTCGTTGGTTGGCTTA
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCGCTCGTTTCGTCGGTTGGCTTA
* ** * * * *
1318302 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGTAGTAGGATTGGT
711 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAGGATCGGC
* * * * * * * * *
1318367 AGCACGCAGAGTGGGACCTGATCGATCCCCGACTTGCACATCCCGCCCCTCTGGTCGACTGAGCG
776 AGCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCA
* * * *
1318432 CCCGCAAGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTGCCAGTCTAA
841 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1318488 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGAAG-A-A------
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
1318544 -------CA--TGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTAGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCT-GGAG
* * *
1318600 AACCTGACCAGTGGCATTAGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGT
129 AACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
1318664 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCGT-GAGAACTC
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTC
*
1318728 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1318793 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC-TTGAGTTTTTAGCTGAATTTTTT
* * * * *
1318858 TATGCAAGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACT-CTTTCTGAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAA
*
1318922 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
450 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
1318987 CTTGGCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * * * *
1319052 TCATTGGCA-AGCAGAAATATGAAGAGGTGCCGAAACCCACCAACCACCGTATCGCTCCATGGCT
580 GCATTGGCACA-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
1319116 TGTGTATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGCCGGT
644 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CGCCCGCCTG-CCGCTCGTTTCGTCGGT
** * * * * *
1319181 TGGCTTAGGTGTACGGAGTTCATTACTAGTATAAGATCAGACCAGACC-AGGAGTTGC-GATAGC
704 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGG-GTTGCAG-CAGC
* * * * * * * *
1319244 AGGATCGGCAGCATACAGAGAGGGACCCGACCGATCCCCGACATGCGCATCCCACCCCTCTGGTC
767 AGGATCGGCAGCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
1319309 GGCTGAGCGCCCGCACGC-CTGTTTCGTAGGTTAATTTAGGCATACGGAGTTCATTCCTAGTCTA
832 GGCTGAGCACCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
1319373 A
896 A
** * *
1319374 G-AT-CG--G---A-T--C---C-AA-AT-----------GAGGGTTGCAACAGGACATGCTGTG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1319413 CCCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-CTGGAGA
* * * *
1319478 ACCTGATCGGCGACATTGGGGTTCCGACGATCTGGGGGGCCGGGGGGGTGTGCGCACATGATATG
130 ACCTGA-CCGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
1319543 CGATGGGTACTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
1319608 TCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
1319673 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTTTG
* * * * *
1319738 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAAACTCCTTCCAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTTCGAAAA
* * *
1319803 AATTTTAAAAAATCTCGAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
1319868 TGGCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
1319933 ATTGGCA-AGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTG
582 ATTGGCACA-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
1319997 TGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCTCGCCCGCCCGCTCGTTTTGTCGATTGGCTT
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTG-CCGCTCGTTTCGTCGGTTGGCTT
* * ** * * * *
1320062 AGGCGTACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGAGTTGCGGTAGCAGGATCGG
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAGGATCGG
* * * * *
1320127 CAGCATGCAGAAGGGGACCCGA-CTGATGCCC-GACATGCGCATCCCGTCTCC-ATGGCCGGCTG
775 CAGCATGCAGAGGGGGACCCGATC-GAT-CCCTGGCTTGCGCATCCCG-CCCCTCTGGCCGGCTG
* * * * *
1320189 AGCGCCCGCACACTTGTTTCGTGGGTTAATTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
1320249 GCATACGGAGTTCATTCCC-GTCTAAGATCAAACTGGACCGGGGGTTACGGCAGGACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
1320313 C-CTGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTTAGAGCATCGCTGGAG
66 CTC-GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-CTGGAG
* * * **
1320377 AACTTGACCGGCTGCATTGGGGTTCCGGCGATCTAGGGGGCCGGGGGGGTGTGCGCACATGATGT
129 AACCTGACC-GCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
1320442 GCGATGGGTGCTGATACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
1320507 CTCCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1320572 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTGTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGCTGAATTTTTTT
* * * * * *
1320637 GTGCATGCCAAAAAAAATACAAGGATCATGTCTGCCAAGTTTCGGGCAAAAACTCCTTCCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * *
1320702 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* ** *
1320767 TGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTAAATGAATTTACAACCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
1320832 ATTGGCACACAAAAATATGAAGATGTGCCTAAACCCAGCTATCACCCTATCGATCCACGGCTTGC
582 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * *
1320897 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTTG-C--CCGCTCATTTCGTCGGTTAGCTTAG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCGCTCGTTTCGTCGGTTGGCTTAG
** ** * **
1320959 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCCGACCGAGGGTTGCAGTAGCAGGATCAACA
712 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAGGATCGGCA
* * ** **
1321024 GCATGCAGAGGGGGACTCGGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCTACTGAGCAC
777 GCATGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
*
1321089 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * *
1321144 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGGTCAGACTGAGGGTTCCGACAGCACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** **
1321208 GCTCGGGCATGTGCTGGTGCCGCAATTTTCTTCGTCGGGGCACCATCGTTAGAGCATCGCCAGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-CTGGAG
* * *
1321273 AACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGTGCCGGAGGGGTGTGCGCACATGATGT
129 AACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
1321338 GCGATGGGTGCTGGTACTTGGCCCTTAT-TATGGGCCCCTATCCCTCCTCAAACCTCGAGAACTC
193 GCGATGGGTGCTGGTACTTGGCCCTTATAT-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
1321402 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
1321467 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAGTTTT
1321518 GCCATGAAAC
Statistics
Matches: 14223, Mismatches: 3445, Indels: 1127
0.76 0.18 0.06
Matches are distributed among these distances:
860 218 0.02
861 128 0.01
862 12 0.00
863 151 0.01
864 300 0.02
865 3 0.00
866 3 0.00
867 4 0.00
868 32 0.00
869 113 0.01
870 65 0.00
871 31 0.00
872 9 0.00
873 36 0.00
874 275 0.02
875 321 0.02
876 88 0.01
877 388 0.03
878 1644 0.12
879 416 0.03
880 63 0.00
881 54 0.00
882 190 0.01
883 162 0.01
884 390 0.03
885 10 0.00
886 216 0.02
887 183 0.01
888 10 0.00
889 14 0.00
890 21 0.00
891 11 0.00
892 46 0.00
893 421 0.03
894 281 0.02
895 827 0.06
896 1563 0.11
897 956 0.07
898 809 0.06
899 1170 0.08
900 1247 0.09
901 172 0.01
902 431 0.03
903 171 0.01
904 140 0.01
905 3 0.00
906 36 0.00
907 64 0.00
908 31 0.00
909 34 0.00
911 3 0.00
912 3 0.00
913 6 0.00
914 4 0.00
915 1 0.00
916 3 0.00
918 1 0.00
919 101 0.01
920 70 0.00
921 5 0.00
922 5 0.00
923 1 0.00
924 4 0.00
925 4 0.00
926 5 0.00
927 2 0.00
928 6 0.00
929 7 0.00
930 10 0.00
932 8 0.00
933 10 0.00
934 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.24
Consensus pattern (896 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCTGGAGAA
CCTGACCGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCAGCAGCAGGATCGGCAGCAT
GCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGC
ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1305087 original size:26 final size:26
Alignment explanation
Indices: 1305051--1305103 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1305041 GTTGACTTAG
* *
1305051 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1305077 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1305103 G
1 G
1305104 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1305984 original size:26 final size:26
Alignment explanation
Indices: 1305948--1305998 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
1305938 GTTGACTTAG
1305948 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1305974 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
1305999 GGATCGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1306880 original size:26 final size:26
Alignment explanation
Indices: 1306844--1306894 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1306834 GTTGACTTAA
*
1306844 GCATACTGAGTTCATTCCCAGTCTAG
1 GCATACGGAGTTCATTCCCAGTCTAG
1306870 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
1306895 AGATCGAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAG
Found at i:1313208 original size:26 final size:26
Alignment explanation
Indices: 1313169--1313218 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1313159 GTTGACTTAG
1313169 GCATACGGACTTCATTCCCAGTCTCA
1 GCATACGGACTTCATTCCCAGTCTCA
* *
1313195 GCATACGGAGTTCATTGCCAGTCT
1 GCATACGGACTTCATTCCCAGTCT
1313219 AAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTCA
Found at i:1314977 original size:26 final size:26
Alignment explanation
Indices: 1314947--1314999 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1314937 GTTGACTTAG
1314947 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1314973 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1314999 G
1 G
1315000 ATTGATCTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1318498 original size:26 final size:26
Alignment explanation
Indices: 1318462--1318514 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1318452 GTTAACTTAG
* *
1318462 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1318488 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1318514 G
1 G
1318515 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1320259 original size:26 final size:25
Alignment explanation
Indices: 1320223--1320274 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
1320213 GTTAATTTAG
1320223 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCC-GTCTAA
1320249 GCATACGGAGTTCATTCCCGTCTAA
1 GCATACGGAGTTCATTCCCGTCTAA
1320274 G
1 G
1320275 ATCAAACTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCGTCTAA
Found at i:1320623 original size:900 final size:895
Alignment explanation
Indices: 1319348--1321517 Score: 3124
Period size: 900 Copynumber: 2.4 Consensus size: 895
1319338 GTTAATTTAG
* ** * * *
1319348 GCATACGGAGTTCATTCCTAGTCTAAGATCGGA-TCCAAATGAGGGTTGCAACAGGACATGCTGT
1 GCATAC-GAGTTCATTCCCAGTCTAAGATC-GACT-GGACTGAGGGTTGC-GCAGCACATGCTG-
* * * *
1319412 GCCCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAG
61 GGCTGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCTGGAG
* * *
1319477 AACCTGATCGGCGACATTGGGGTTCCGACGATCTGGGGGGCCGGGGGGGTGTGCGCACATGATAT
126 AACCTGACCGGCG-CATTGGGGTTCCGACGATC-AGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
1319542 GCGATGGGTACTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCA
189 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* *
1319607 CTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAA
254 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
1319672 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
1319737 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAAACTCCTTCCAAAA
384 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC-AAAAACTCCTTCCGAAA
* * *
1319802 AAATTTTAAAAAATCTCGAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
448 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
1319867 TTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGG
513 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
1319932 CATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTG
578 CATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
1319997 TGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCTCGCCCGCCCGCTCGTTTTGTCGATTGGCTT
643 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
* *
1320062 AGGCGTACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGAGTTGCGGTAGCAGGATCGG
708 AGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGG
* * * * *
1320127 CAGCATGCAGA-AGGGGACCCGACT-GATGCCCGACATGCGCATCCCGTCTCC-ATGGCCGGCTG
773 CAGCATGCAGAGA-GGGACCCGACTCGATCCCCGACTTGCGCATCCCG-CCCCTCTGGCCGACTG
* * *
1320189 AGCGCCCGCACACTTGTTTCGTGGGTTAATTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 AGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1320249 GCATACGGAGTTCATTCCC-GTCTAAGATCAAACTGGACCGGGGGTTACGGCAGGACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATC-GACTGGACTGAGGGTTGC-GCAGCACATGCTGGG
* *
1320313 CCTGAGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTTAGAGCATCGCTGGAGA
63 -CTGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCTGGAGA
* *
1320378 ACTTGACCGGCTGCATTGGGGTTCCGGCGATCTAGGGGGCCGGGGGGGTGTGCGCACATGATGTG
127 ACCTGACCGGC-GCATTGGGGTTCCGACGATC-AGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
1320443 CGATGGGTGCTGATACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
190 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
1320508 TCCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAAT
255 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1320573 GGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCTGAATTGTTTTG
320 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
1320638 TGCATGCCAAAAAAAATACAAGGATCATGTCTGCCAAGTTTCGGGCAAAAACTCCTTCCGAAAAA
385 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAA
* * *
1320703 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
450 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* ** *
1320768 GCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTAAATGAATTTACAACCCATAAAAATGGCA
515 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
1320833 TTGGCACA-CAAAAATATGAAGATGTGCCTAAACCCAGCTATCACCCTATCGATCCACGGCTTGC
580 TTGGCA-AGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
1320897 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCT----TGCCCGCTCATTTCGTCGGTTAGCTTA
644 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGCTCATTTCGTCGGTTGGCTTA
* * * **
1320958 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCCGACCGAGGGTTGCAGTAGCAGGATCAAC
709 GGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGC
* * * *
1321023 AGCATGCAGAGGGGGACTCG-GTCGATCCCC-AGCTTGCGCATCCCGCCCCTCTGGCCTACTGAG
774 AGCATGCAGAGAGGGACCCGACTCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGACTGAG
* * *
1321086 CACCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 CGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
1321144 GCATACAGAGTTCATTCCCAGTCTAAGATCGGGTCAGACTGAGGGTTCCGACAGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGACT-GGACTGAGGGTTGCG-CAGCACATGCTGGG
* * * **
1321209 CTCGGGCATGTGCTGGTGCCGCAATTTTCTTCGTCGGGGCACCATCGTTAGAGCATCGCCAGAGA
63 CT-GAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCTGGAGA
* * * *
1321274 ACCTGACCGACGGCATTGGGGTTCTGACGATCGGGGGTGCCGGAGGGGTGTGCGCACATGATGTG
127 ACCTGACCGGC-GCATTGGGGTTCCGACGATCAGGGG-GCCGGGGGGGTGTGCGCACATGATGTG
* * *
1321339 CGATGGGTGCTGGTACTTGGCCCTTAT-TATGGGCCCCTATCCCTCCTCAAACCTCGAGAACTCA
190 CGATGGGTGCTGGTACTTGGCCCTTATAT-TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
*
1321403 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
254 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
1321468 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
1321518 GCCATGAAAC
Statistics
Matches: 1145, Mismatches: 110, Indels: 33
0.89 0.09 0.03
Matches are distributed among these distances:
894 5 0.00
895 204 0.18
896 310 0.27
899 226 0.20
900 380 0.33
901 20 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCGACTGGACTGAGGGTTGCGCAGCACATGCTGGGCTG
AGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGCTGGAGAACCT
GACCGGCGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTA
AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
AGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCATGC
AGAGAGGGACCCGACTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1321154 original size:26 final size:26
Alignment explanation
Indices: 1321118--1321170 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1321108 GTTGACTTAG
*
1321118 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1321144 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1321170 G
1 G
1321171 ATCGGGTCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Done.