Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 8 of 129
Found at i:1323195 original size:870 final size:874
Alignment explanation
Indices: 1321516--1329367 Score: 9388
Period size: 870 Copynumber: 8.9 Consensus size: 874
1321506 ACTTCGAGTT
1321516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
1321581 CATTGGCACGTAGAAATATGATGATGTGCATAAACCCACCTAGCACCCTATCGATCCACGGCTTG
66 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
* * * * *
1321646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGTCCGCTCGTTTCGTTGGTTGGCTTAGGC
131 TGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * * *
1321711 ATACAAAATTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTTCGATAGCATGATCGGCAGG
196 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGC
* * * * *
1321776 ACGCAGAAGGGGA-CCTAGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
261 ACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
1321840 CGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAG-AT-CGA--A
325 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTA
** * * * *
1321901 T-CGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTCTTC
390 TCCCAATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
** * * * * *
1321965 ACCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGCTC
455 GTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
** * *
1322030 GGGGGGTTGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTAGTACTTGGCCCTTATATTGGC
520 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
1322095 CCCCTATCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAAGT
585 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
1322160 TTGCTGCCAGTAGCCACTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
650 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
1322225 GTACACTTCTAGTTTTTTTGCTGAATTTTTTTGTCCATGCCAAAAAAAATACAAGGATC-CAGTC
715 GTACACTTCGAG-TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-GTC
* * * **
1322289 TACCAAGTTTGGGGCCCAAAATCCTTCCGAAAAAATTTTAAAAAATCCCAAACTACAAAAAGTTT
778 TACCAAGTTTGGGGCCAAAAATCCTTCCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
* *
1322354 CGAAAATCGTGAAAAATAGAAAACAAGTTGTC
843 CGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
1322386 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTCACAAGCCATACAAATTG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
1322451 CATTGGCATGCAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTGTCGATCCACTGCTTA
66 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
* *
1322516 TGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCTCGTTTCCTCGGTTGGCTTAGGC
131 TGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
** * * **
1322581 ATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGCAGCAGGATCCACAGC
196 ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGC
* * * * * *
1322646 ACGTAGAGGGGGACCC-AGCCGATCCCCTGCTTGCGCATCCCGCCCCTCTAGTCGACTGAGCACC
261 ACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
1322710 CGCACGCTTC-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-AG-
325 CGCACGC-TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGT
* * * *
1322770 A-CCCAATCGAGGGTTGTGGTAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCGTATTTTTCTT
389 ATCCCAATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * *
1322834 CGTCGGGGCACCATTGCCGGAGCATCGTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGGCGAT
454 CGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
1322899 CGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
519 C-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * *
1322964 GCCCCTTATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAG
583 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
1323029 GTTTGCTGCCAGTAGCCATTAAAGTGTCGGAAATGGGGACACTTTTTCCAAATGGTCACAAAATC
648 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
1323094 TTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACCTC
713 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
1323159 TACCAAGTTTGGAGCCAAAAATTCTTCCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
778 TACCAAGTTTGGGGCCAAAAATCCTTCCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
1323224 C-AGAAATCGTGAAAAATAGAAAACGAGTCGTC
843 CGA-AAATCGTGAAAAATAGAAAACGAGTCGTC
**
1323256 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAT
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * **
1323321 CATTGGCACACAGAAATATGCAGATGTCCCTAAACCCACCTACCACCCTAAT-GATCAATGGCTT
66 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACAGCTT
* *
1323385 GTGCATCCCGTCTCTCTGGCCGACGTAGCGCCCGGCCGCCAGCCCGCCTGCTCGTTTCGTCAGTT
130 GTGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-G-C-CC-G--C-CC-GCTCGTTTCGTCGGTT
** ** * * *
1323450 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCTGCAGCAGG
187 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGG
** * ** * * * * *
1323515 ATCGATAGCATGCAGAGAAGGACCC-AGTCGATCCCCAGCTTGCACATCCCGTCCGTCTGGCCGG
252 ATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
1323579 CTGAGTGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-
316 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
** * * * **
1323643 AT-C-AG-A-CCGGACCGAAGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
381 ATACGAGTATCCCAATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * * *
1323704 TTTTTCTTTGACAGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
446 TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* *
1323769 CCGGCGATCGGGGGGGCC-GGGCGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
511 CCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
1323833 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
575 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
1323898 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC-TTTTTCAAATGGTC
640 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
1323962 ACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGG
705 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * *
1324027 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCGAAAAATTTTAAAAAATCCCGAATCGTA
770 ATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCCAAAAAATTTTAAAAAATCCCGAACCGCA
* *
1324091 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
835 AAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
1324131 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
1324196 CATTGGCACGCAAAAATATAAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GACTT
66 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG-CTT
* * * * *
1324260 GCGCATCTCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACCCGCACGCTAATTTCATGGGTT
130 GTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG----CCCGCTCG----TTTCGTCGGTT
* * * * * * ** * *
1324325 GACTTAGGCATACGGAGTTCATTGCCTGTCTAAGATCGGATCAAACCAAGGGTTGCAGTAGCAGG
187 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGG
* *** * *
1324390 ATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTATCCCTTTGGCCGAC
252 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
1324455 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
317 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* **
1324520 TACGGAGTTCATTCCCAATTTAAGGTCGGACCAGACCAAGGGTTACGATAGCACATGCTGGGCTC
382 TAC-GAG-T-A-TCCC-----AA--T-----C-G----AGGGTTGCGGCAGCACATGCTGGGCTC
* * * * *
1324585 GGGCATGTGCTAGTGTCACATTTTTCTTCGTCGGGG-A--A---CC--ATCA-C--CGGAGAACT
426 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACC
* * * * *
1324639 TGACCGGTGGCATTTGGGTTCCGACGATCAGGGGGCCGAGGGGGTGTGCGCACAAGATGTGCGAT
491 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
*
1324704 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
556 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
1324769 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGAGG
621 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
1324834 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
686 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
** ** *
1324899 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAACGCCTT-CCAAAAAATTG
751 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCCAAAAAATTT
* * * * *
1324963 TAAAAAATTCTGAACCGCAAAAAGTTTCGAATATCATGAAAAATAGAAAACGAGTCATC
816 TAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
1325022 TTGCCATTAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
1325087 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACTCTATCGATCCACAGCTTA
66 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
* * * * * * * *
1325152 CGGATCCCATCTCTCTAGTCGGCGTAGTGCCCGCCCACCTATCCGCTCGCTCGTTTCGTCGATTG
131 TGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-----C---CCGCCCGCTCGTTTCGTCGGTTG
* ** *
1325217 GCTTAGGCATACGGAGTTCATTCCCCTTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGA
188 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGA
* * * * * * * * *
1325282 TCAGCAGCACACAAATGGGGACCCGTCCGATCCCCAGCTTGCGCATGCCGCCCCTCTTGCCGACT
253 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
1325347 GAGCGCCCGCACGCTCGTTTTGTAGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCAT
318 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * *
1325412 ACGAAGTTCATTCCCAATCTAAGATCGGATCCAACCGAGGGTTGCGGCAGCAAATGCTAGGCTTG
383 ACG-AG-T-A-T-CC---C----A----AT-----CGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * *
1325477 GGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCGCCGGTGCATCGCCGGAGAACCT
427 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* ** * * * **
1325542 GACCGACGATATTGGGGTTCCGGCGAT-AGGGGG--TGGGGGGTGTGCATACATGATGTGCGATG
492 GACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
*
1325604 GGTGCTGGTA-------C-----TTGGCCCCCTATCCCACATCAAACCTC-AGGAACTCACACCC
557 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCC
* * * *
1325656 CCTTAAGGAGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAACTGTCTAAAATGGGG
621 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
1325721 ACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCG
686 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* **
1325786 TGCGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCGAAAAAAATTT
751 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCCAAAAAATTT
* * * * * *
1325851 TAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTTGAC
816 TAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
1325910 CTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTACGAATTTACATGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
1325975 AATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTGCAACCCTATCGATCCACGGCTTA
66 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
* * *
1326040 TGCATCCCGTCTCTCTGGTCGACGTAGTGTCCGCCCGTCCGCCCGCCCGTCCGCTTGTTTCGTTG
131 TGCATCCCGTCTCTCTGGCCGACGTA--GT--G--C--CCGCCCG--C--CCGCTCGTTTCGTCG
* * * * *
1326105 ATTGGCTTAGGCATACGGAGTTCATTCCCGGTCTAAGATCAGACCGGACCGAGGGTTGCAGTTGC
184 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGC
* * * * * *
1326170 AAGATTGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCC
249 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
1326235 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
314 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
1326300 GCATACGGAGTTCATTCCCAATTTAAGGTCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGG
379 GCATAC-GAG-------------T-A--TC---CCA-ATCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1326365 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG-ACCATCACTGGAGCATCGTCGGAGA
423 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * * *
1326429 ACCTGACCGGTGGCATTTGGGTTCCGACGATCAGGGGGCCAGGGGAGTGTGCGCACAAGATGTGT
488 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
1326494 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
553 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
1326559 CCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
618 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
1326624 GGGACATTTTTTTGAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
683 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * ** * *
1326689 GCATGCCAACAAAAATAAAAGCATCACGTCTACCATGTTTGGGGATAAAACTCCTTCCGAAAAAA
748 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCCAAAAAA
* * *
1326754 TTTAAAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAATGAGTTGTC
813 TTT-TAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
1326817 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * * *
1326882 CATTGGCACACAAAAATAGGAAGATGTGCCTAAACCAACCTATCACCCTATCAATCCACGGCTTG
66 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
* *
1326947 CT-CATCCCATCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCG
131 -TGCATCCCGTCTCTCTGGCCGACGTAGT--------G--C-CCGCCCGCCCGCTCGTTTCGTCG
* * ** *
1327011 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGACAGT
184 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGC
* * * * * * * * *
1327076 GGGATTGGTAGCACGCAGAGGGGGACCTGACCAATCCTCGGCTTGCGCATCCTGCCCCTTTGGTC
249 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
*
1327141 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCTAA
314 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
1327206 GCATACGGAGTTCATTCCCAATTTAAGGTCGGACCGAACCGAGGGTTACGGCAGCACATGCTGGG
379 GCATAC-GAG-T-A-TCCC-----AA--T----------CGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * ** **
1327271 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGGAACCATCACCGGAGCATCACCAAAGA
423 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
1327336 ACCTGACCGACGGCATTTGGGTTCCGGCGATCAGGGGGCC--GGGGGTGTGCGCACAAGATGTGC
488 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
1327399 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCCCA
553 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
1327464 CCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAATTG
618 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
1327529 GGGACACTTTTTTGAAATGATCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTTTTTTGT
683 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
1327594 GCATGCCAACAAAAATA-AAGGATCAAGTCTACCAAGTTTGAGGCCAAAACTCCTTCCAAAAAAA
748 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCCAAAAAA
* * *
1327658 TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
813 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
1327720 TTGCCATGAAACGTCACGTGAAGGCTTAAAGGACAATTGTATGAATTTACAAGCCATAAAAATGG
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
1327785 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCT-TCGATCCACAGCTT
66 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACAGCTT
** * *
1327849 GTGCATCTTGTCTTTCTGGCC-AGCGTAGTGCCTGTCCTCCAGCCCGCCCGCTCATTTCGTCGGT
130 GTGCATCCCGTCTCTCTGGCCGA-CGTA--G--TG--C-CC-GCCCGCCCGCTCGTTTCGTCGGT
* *
1327913 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGTAGCAG
186 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAG
* ** * * *
1327978 GATGGGCAGCACATAGAGGGGGACCCGACCGATCCCCGACTTGCGTATCCCACCCCTCTGGCCGG
251 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
1328043 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG-
316 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
** * *
1328107 AT-CG-G-A-CCGGACCGAGGGTTGCGGCAGCACATGCTGGGTTCGGGCATGTGCTGGTGCCGCA
381 ATACGAGTATCCCAATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * * ** *
1328168 TTTTTCTTCGTCGGGGCACCATTGTCAGAGCATCACCGGAGAACCTGACCAGCGGCATTGGGGTT
446 TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
* * * * *
1328233 TCGACGATCGGGTGGGTCGTGCGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
511 CCGACGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
1328298 TTATATTGGCCCCCTATACCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
575 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
1328363 TTTTACAAGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
640 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
1328428 AC-AAATCTTGTACATTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
705 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* ** *
1328492 ATCACTTCTACCAAGTTTGGGGCCAAAAATCCTT-CTGAAAAATTTTTAAAAATCCCGAACCGCA
770 ATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCCAAAAAATTTTAAAAAATCCCGAACCGCA
* *
1328556 AAAAATTTGGAAAATCGTGAAAAATAGAAAACGAGTCGTC
835 AAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* ** * *
1328596 TTGCCATGAAATTTCTTGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT-C
1 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
1328660 CTATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGACCCACAGCTT
66 C-ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
* * * * * *
1328725 GCGCATCCCGTTTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGG
130 GTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
1328790 CATACAGAGTTCATTCCCAGTCAAAAATCAGACCGGACTGAAGGTTGTGGTAGCAGGATCAGCAG
195 CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAG
* * * * * * * *
1328855 CACACAGAAGGGGACCCGATCGATCCCCGGTTTACACATCCCGCCCCTTTGGCCGGTTGAGCGCC
260 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
1328920 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
325 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAG-
* * * *
1328985 TCATTCTTAGTCTAAGATTGGACTAGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATAT
388 T-A-TC-----C----------C-A-ATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * * * * * *
1329050 GCTGGTGCTGCATTTTTCTTCG-CTAGGCCACCATCGTCGGAGCTTCGACGGAGAACCTAACCGG
434 GCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGG
* * * * *
1329114 TGGCATTGGGGTTCCGACAATCGGGGGG--GTCGGGGGTGTGTGCAAATGATGTGCGATGGGTGC
498 CGGCATTGGGGTTCCGACGATCGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
1329177 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-CTGAGAACTCACACCCCTTTA
562 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACTCACACCCCCTTA
* * *
1329241 AAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTAAATGCGGACACT
626 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
1329306 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
691 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
1329368 GCATGCTGAA
Statistics
Matches: 6087, Mismatches: 693, Indels: 381
0.85 0.10 0.05
Matches are distributed among these distances:
868 195 0.03
869 6 0.00
870 723 0.12
871 204 0.03
872 8 0.00
873 5 0.00
874 113 0.02
875 392 0.06
876 354 0.06
877 358 0.06
878 309 0.05
879 2 0.00
882 2 0.00
884 2 0.00
886 2 0.00
887 210 0.03
888 196 0.03
889 8 0.00
890 196 0.03
891 606 0.10
892 427 0.07
893 53 0.01
894 149 0.02
895 10 0.00
896 12 0.00
897 7 0.00
898 3 0.00
899 46 0.01
900 196 0.03
901 63 0.01
902 32 0.01
903 185 0.03
904 52 0.01
905 225 0.04
906 472 0.08
907 249 0.04
908 2 0.00
910 7 0.00
911 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (874 bp):
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
TGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGC
ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTAT
CCCAATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
TCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
CAAGTTTGGGGCCAAAAATCCTTCCCAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGA
AAATCGTGAAAAATAGAAAACGAGTCGTC
Found at i:1324543 original size:26 final size:26
Alignment explanation
Indices: 1324491--1324543 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1324481 GTTGACTTAG
*
1324491 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1324517 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1324543 G
1 G
1324544 GTCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1325420 original size:26 final size:26
Alignment explanation
Indices: 1325384--1325434 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1325374 TGACTTAGGG
* *
1325384 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAATCTAAGC
1325410 ATACGAAGTTCATTCCCAATCTAAG
1 ATACGAAGTTCATTCCCAATCTAAG
1325435 ATCGGATCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAATCTAAGC
Found at i:1326326 original size:26 final size:26
Alignment explanation
Indices: 1326274--1326326 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1326264 GTTGACTTAG
*
1326274 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
1326300 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1326326 G
1 G
1326327 GTCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1327025 original size:906 final size:899
Alignment explanation
Indices: 1323616--1329367 Score: 7549
Period size: 891 Copynumber: 6.4 Consensus size: 899
1323606 GTTGACTTAG
* * * * * **
1323616 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
1323681 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGACAGGGCACCATCGTCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTC-GGGGACCATCCT-GGAGCATCGCCGGAGA
* * *
1323746 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGCGGTGTGCGCACATGATGTGC
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-AGGGGGCCGGG-GGTGTGCGCACAAGATGTGC
1323811 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
1323876 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
* *
1323941 GGGACAC-TTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTGTTTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
1324005 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAA
387 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
1324069 TTTTAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
452 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
1324134 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
1324199 TGGCACGCAAAAATATAAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GACTTGCG
582 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG-CTTGCG
* * * ** * * *
1324263 CATCTCGTCTCTCTGGCCGACGTAGTGCCCGCC-CGCCCACCCGCACGCTAATTTCATGGGTTGA
646 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGC-CCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * ** *
1324327 CTTAGGCATACGGAGTTCATTGCCTGTCTAAGATCGGATCAAACCAAGGGTTGCAGTAGCAGGAT
710 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGAT
* * ** *
1324392 CGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTATCCCTTTGGCCGACTG
775 CGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGGCTG
1324457 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
1324517 GCATACGGAGTTCATTCCCAATTTAAGGTCGGACCAGACCAAGGGTTACGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1324582 CTCGGGCATGTGCTAGTGTCACATTTTTCTTCGTCGGGGA--A--C-----CATCACCGGAGAAC
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGACCATCCTGGAGCATCGCCGGAGAAC
* * *
1324638 TTGACCGGTGGCATTTGGGTTCCGACGATCAGGGGGCCGAGGGGGTGTGCGCACAAGATGTGCGA
131 CTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGCC--GGGGGTGTGCGCACAAGATGTGCGA
*
1324703 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
194 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
1324768 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGAG
259 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
1324833 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
324 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
** *
1324898 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAACGCCTTCC-AAAAAATT
389 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* * * * *
1324962 GTAAAAAATTCTGAACCGCAAAAAGTTTCGAATATCATGAAAAATAGAAAACGAGTCATCTTGCC
454 TTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
1325027 ATTAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTG
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
1325092 GCACACAGAAATATGAAGATGTGCCTAAACCCACCAACCACTCTATCGATCCACAGCTTACGGAT
584 GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCAT
* * * * *** * *
1325157 CCCATCTCTCTAGTCGGCGTAGTGCCCGCC-CACCTATCCGCTCGCTCGTTTCGTCGATTGGCTT
649 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCGC-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* ** * * *
1325221 AGGCATACGGAGTTCATTCCCCTTCTAAGATCAGACCGGACTGAGGGTTGCGGTAGCAGGATCAG
713 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGG
* * * * *
1325286 CAGCACACAAATGGGGACCCGTCCGATCCCCAGCTTGCGCATGCC-GCCCCTCTT-GCCGACTGA
778 CAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAT-CCTGCCCCT-TTGGCCGGCTGA
* * *
1325349 GCGCCCGCACGCTCGTTTTGTAGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAA
841 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1325408 GCATACGAAGTTCATTCCCAATCTAAGATCGGATCCA-ACCGAGGGTTGCGGCAGCAAATGCTAG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGA-CCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
1325472 GCTTGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCGCCGGTGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG-ACCATC-CTGGAGCATCGCCGGAG
* ** * ** ** *
1325537 AACCTGACCGACGATATTGGGGTTCCGGCGAT-AGGGGGTGGGGGGTGTGCATACATGATGTGCG
128 AACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGTGTGCGCACAAGATGTGCG
*
1325601 ATGGGTGCTGGTA-------C-----TTGGCCCCCTATCCCACATCAAACCTC-AGGAACTCACA
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA-GAACTCACA
* * *
1325653 CCCCCTTAAGGAGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAACTGTCTAAAATG
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
*
1325718 GGGACACTTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
1325783 GCGTGCGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT-CGAAAAAA
387 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAA
* * * ** * * *
1325847 ATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTTGACCT
451 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
1325912 GCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTACGAATTTACATGCCATAAAAATGGAA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * **
1325977 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTGCAACCCTATCGATCCACGGCTTATG
581 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCG
* * * * * *
1326042 CATCCCGTCTCTCTGGTCGACGTAGTGTCCGCCCGTCCGCCCGCCCGTCCGCTTGTTTCGTTGAT
646 CATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCG--C-CCCGCCCGCCCGCTCGTTTCGTCGGT
* * * *
1326107 TGGCTTAGGCATACGGAGTTCATTCCCGGTCTAAGATCAGACCGGACCGAGGGTTGCAGTTGCAA
707 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAG
* * * *
1326172 GATTGGTAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGG
772 GATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGG
* *
1326237 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
837 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1326300 GCATACGGAGTTCATTCCCAATTTAAGGTCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
*
1326365 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGACCATCACTGGAGCATCGTCGGAGAA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGACCATC-CTGGAGCATCGCCGGAGAA
* * *
1326430 CCTGACCGGTGGCATTTGGGTTCCGACGATCAGGGGGCCAGGGGAGTGTGCGCACAAGATGTGTG
130 CCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGCC-GGGG-GTGTGCGCACAAGATGTGCG
*
1326495 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
1326560 CTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* * *
1326625 GGACATTTTTTTGAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * **
1326690 CATGCCAACAAAAATAAAAGCATCACGTCTACCATGTTTGGGGATAAAACTCCTTCCGAAAAAAT
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * *
1326755 TTAAAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTG
453 TT-TAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
1326820 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * * *
1326885 TGGCACACAAAAATAGGAAGATGTGCCTAAACCAACCTATCACCCTATCAATCCACGGCTTGCTC
582 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
* *
1326950 ATCCCATCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTG
647 ATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCG-CC-CCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * **
1327015 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGC-GACAGTGGG
709 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAG-TAGCAGG
* * * * * * *
1327079 ATTGGTAGCACGCAGAGGGGGACCTGACCAATCCTCGGCTTGCGCATCCTGCCCCTTTGGTCGGC
773 ATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGGC
*
1327144 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCCCAGTCTAA
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1327206 GCATACGGAGTTCATTCCCAATTTAAGGTCGGACC-GAACCGAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
* ** * * **
1327270 GCTCGGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGGAACCATCACCGGAGCATCACCAAAG
65 GCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG-ACCATC-CTGGAGCATCGCCGGAG
* * *
1327335 AACCTGACCGACGGCATTTGGGTTCCGGCGATCAGGGGGCCGGGGGTGTGCGCACAAGATGTGCG
128 AACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGTGTGCGCACAAGATGTGCG
*
1327400 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCCCAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
1327465 CCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAATTGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGG
* * * *
1327530 GGACACTTTTTTGAAATGATCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTTTTTTGTG
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
1327595 CATGCCAACAAAAATA-AAGGATCAAGTCTACCAAGTTTGAGGCCAAAACTCCTTCCAAAAAAAT
388 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* *
1327659 TTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
453 TTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * *
1327724 CATGAAACGTCACGTGAAGGCTTAAAGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATT
518 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
1327789 GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCT-TCGATCCACAGCTTGTGC
583 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCGATCCACAGCTTGCGC
** * * * * *
1327853 ATCTTGTCTTTCTGGCC-AGCGTAGTGCCTGTCC-TCCAGCCCGCCCGCTCATTTCGTCGGTTGG
647 ATCCCGTCTCTCTGGCCGA-CGTAGTGCCCG-CCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* **
1327916 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGTAGCAGGAT
710 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGAT
* * * * ** *
1327981 GGGCAGCACATAGAGGGGGACCCGACCGATCCCCGACTTGCGTATCCCACCCCTCTGGCCGGCTG
775 CGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGGCTG
1328046 AGCGCCCGCACGCTCGTTTCGT-GG--G---T-----T---GA---C-TT---AG-----
840 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
1328080 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
1328145 TTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGTCAGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG-ACCATCCT-GGAGCATCGCCGGAGA
* * * * * *
1328210 ACCTGACCAGCGGCATTGGGGTTTCGACGATCGGGTGGGTCGTGCGGGTATGCGCACATGATGTG
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATCAGG-GGGCCG-G-GGGTGTGCGCACAAGATGTG
* *
1328275 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTGGAGAACTCAC
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
1328340 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCAATTAAAGTGTCTGAAAT
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* *
1328405 GGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACATTTAGAGTTTTTAGCTGAATTTTTTTG
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
1328469 TGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAAATCCTTCTG-AAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
1328533 ATTTTTAAAAATCCCGAACCGCAAAAAATTTGGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
451 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* ** * *
1328598 GCCATGAAATTTCTTGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT-CCT
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-
* * *
1328662 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGACCCACAGCTTGC
580 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
* * * * *
1328727 GCATCCCGTTTCTTTGGCCGGCGTAGT-------G-CCCGCCCGCCCGCTCGTTTCATCAGTTGG
645 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * **
1328784 CTTAGGCATACAGAGTTCATTCCCAGTCAAAAATCAGACCGGACTGAAGGTTGTGGTAGCAGGAT
710 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGAT
* * * * * * * *
1328849 CAGCAGCACACAGAAGGGGACCCGATCGATCCCCGGTTTACACATCCCGCCCCTTTGGCCGGTTG
775 CGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGGCTG
1328914 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
1328974 GCATACGGAGTTCATTCTTAGTCTAAGATTGGACTAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * *
1329039 CTTGGGCATATGCTGGTG-CTGCATTTTTCTTCGCTAGGCCACCATCGTCGGAGCTTCGACGGAG
66 CTCGGGCATGTGCTGGTGTC-GCATTTTTCTTCG-TCGGGGACCATCCT-GGAGCATCGCCGGAG
* * * * * *
1329103 AACCTAACCGGTGGCATTGGGGTTCCGACAATCGGGGGGGTCGGGGGTGTGTGCA-AATGATGTG
128 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-AGGGGGCCGGGGGTGTGCGCACAA-GATGTG
1329167 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-CTGAGAACTCA
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACTCA
* * *
1329231 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTAAA
255 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* *
1329296 TGCGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
1329361 GTGCATG
385 GTGCATG
1329368 GCATGCTGAA
Statistics
Matches: 4271, Mismatches: 484, Indels: 200
0.86 0.10 0.04
Matches are distributed among these distances:
868 159 0.04
869 2 0.00
871 1 0.00
874 142 0.03
875 11 0.00
876 247 0.06
877 197 0.05
879 3 0.00
882 4 0.00
883 1 0.00
885 1 0.00
886 6 0.00
887 210 0.05
888 199 0.05
889 12 0.00
890 192 0.04
891 644 0.15
892 454 0.11
893 48 0.01
894 170 0.04
895 6 0.00
897 2 0.00
898 1 0.00
899 36 0.01
900 160 0.04
901 97 0.02
902 36 0.01
903 193 0.05
904 47 0.01
905 221 0.05
906 510 0.12
907 259 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGACCATCCTGGAGCATCGCCGGAGAAC
CTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGTGTGCGCACAAGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCC
CGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGGCAG
CACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1327232 original size:26 final size:26
Alignment explanation
Indices: 1327180--1327232 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1327170 GTTGACTTAG
* *
1327180 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1327206 GCATACGGAGTTCATTCCCAATTTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1327232 G
1 G
1327233 GTCGGACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1328984 original size:26 final size:26
Alignment explanation
Indices: 1328948--1329000 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1328938 GTTGACTTAG
1328948 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
**
1328974 GCATACGGAGTTCATTCTTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1329000 G
1 G
1329001 ATTGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1329690 original size:26 final size:26
Alignment explanation
Indices: 1329654--1329706 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1329644 GTTGACTTAG
1329654 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1329680 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1329706 G
1 G
1329707 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1330023 original size:683 final size:686
Alignment explanation
Indices: 1328673--1330053 Score: 1850
Period size: 706 Copynumber: 2.0 Consensus size: 686
1328663 TTGGCACATA
* *
1328673 GAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGACCCACAGCTTGCGCATCCCGTTT
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCACAGCTTGCGCATCCCGTCT
* * *
1328738 CTTTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCA
66 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCATCAGTTCGCTTAGGCATACAGAGTTCA
* * * *
1328803 TTCCCAGTCAAAAATCAGACCGGACTGAAGGTTGTGGTAGCAGGATCAGCAGCACACAGAAGGGG
131 TTCCCAGTCAAAAATCAGACCAGACTCAAGGTTGTGGCAGCAGGATCAGCAACACACAGAAGGGG
* * * * *
1328868 ACCCGATCGATCCCCGGTTTACACATCCCGCCCCTTTGGCCGGTTGAGCGCCCGCACGCTCGTTT
196 ACCCGACCGATCCCCGGCTTACACATCCCGCCCCTCTGGCCGGTTGAACGCCCGCACGCTCATTT
* ** *
1328933 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTTAGTCT
261 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAATCT
** ** * *
1328998 AAGATTGGACTAGACCGAGGGTTGTGGCAGCACATGCTGGGCTTGGGCATATGCTGGTGCTGCAT
326 AAGATCAGACTAGACCGAGGGTTACGACAGCACATGCTGGGCTTGGGCATATGCTGGTGCCGCA-
**
1329063 TTTTCTTCGCTAGGCCACCATCGTCGGAGCTTCGACGGAGAACCTAACCGGTGGCATTGGGGTTC
390 -TTTCTT--CT------CCATC-TC-GA---TC-ACGGAGAACCTAACCGGCAGCATTGGGGTTC
* * * *
1329128 CGACAATCGGGGGGGTCGGGGGTGTGTGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
440 CGACAATCAGGGGGGCCGGGGGGGTGTGCAAATGATGTGCGATGGCTGCTGGTACTTGGCCCTTA
*
1329193 TATTGGCCCCCTATCCCTCATCAAACCCTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTT
505 TATTGGCCCCCTATCCCTCATCAAACCCTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
1329258 TACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTTAAATGCGGACACTTTTTTCAAATGGTCACA
570 TACAGGTTTGCTACCAGTAGCCAATAAAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCACA
*
1329323 AAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGGCATGCT
635 AAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGGCATGCT
* * *
1329375 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-CTGTATCCCGTC
1 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCACAGCTTGC-GCATCCCGTC
* * * *
1329439 TCTCTGGCTGGCGTAGTGCCTGCCCGCCTGCCCGCTCATTTCGTCGGTTCGCTTAGGCATACAGA
65 TCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCTCATTTCATCAGTTCGCTTAGGCATACAGA
* * * ** * *
1329504 GTTCATTCCCAGTCTAAGATCAGAGCAGAC-CAAGGGTTGTGGCAGCAGGATTGGCAACGCGCAG
126 GTTCATTCCCAGTCAAAAATCAGACCAGACTCAA-GGTTGTGGCAGCAGGATCAGCAACACACAG
* * * *
1329568 ATGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAACGCCCGCACGC
190 AAGGGGACCCGACCGATCCCCGGCTTACACATCCCGCCCCTCTGGCCGGTTGAACGCCCGCACGC
1329633 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCC
255 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCC
* * *
1329698 CAATCTAAGATCAGACTGGACCGAGGGTTACGACAGCACATGCTGGGGTCT-GGCATGTGCTGGT
320 CAATCTAAGATCAGACTAGACCGAGGGTTACGACAGCACATGCTGGGCT-TGGGCATATGCTGGT
* * * *
1329762 GCCGCA-TT-TT-T-C-T-TC-A-C-CGGAGAACCTGACCTGCAGCATTGGGGTTCCGGCGATCA
384 GCCGCATTTCTTCTCCATCTCGATCACGGAGAACCTAACCGGCAGCATTGGGGTTCCGACAATCA
* *
1329818 GGGGGGCCGGGGGGGTGTGCGTACATGATGTGTGATGGCTGCTGGTACTTGGCCCTTATATTGGC
449 GGGGGGCCGGGGGGGTGTGC--AAATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGC
* *
1329883 CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTATAGAGCATTTGAGATTTTACAGGT
512 CCCCTATCCCTCATCAAACCCTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
1329948 TTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
577 TTGCTACCAGTAGCCAATAAAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCACAAAATCCT
*
1330013 GTTCACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGGCA
642 GTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGGCA
1330054 ACAAAAGTAC
Statistics
Matches: 603, Mismatches: 67, Indels: 37
0.85 0.09 0.05
Matches are distributed among these distances:
681 50 0.08
683 202 0.33
687 1 0.00
689 2 0.00
691 1 0.00
692 1 0.00
699 1 0.00
701 1 0.00
702 72 0.12
703 2 0.00
704 1 0.00
705 2 0.00
706 266 0.44
707 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.27
Consensus pattern (686 bp):
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGACCCACAGCTTGCGCATCCCGTCT
CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCATCAGTTCGCTTAGGCATACAGAGTTCA
TTCCCAGTCAAAAATCAGACCAGACTCAAGGTTGTGGCAGCAGGATCAGCAACACACAGAAGGGG
ACCCGACCGATCCCCGGCTTACACATCCCGCCCCTCTGGCCGGTTGAACGCCCGCACGCTCATTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAATCT
AAGATCAGACTAGACCGAGGGTTACGACAGCACATGCTGGGCTTGGGCATATGCTGGTGCCGCAT
TTCTTCTCCATCTCGATCACGGAGAACCTAACCGGCAGCATTGGGGTTCCGACAATCAGGGGGGC
CGGGGGGGTGTGCAAATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCCTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCA
GTAGCCAATAAAGTGTCTGAAATGCGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTC
GAGTTTTTAGCTAAATTTTTTTGTGCATGGCATGCT
Found at i:1330553 original size:26 final size:26
Alignment explanation
Indices: 1330517--1330569 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1330507 GTTGAATTAG
1330517 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1330543 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1330569 G
1 G
1330570 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1331452 original size:26 final size:26
Alignment explanation
Indices: 1331416--1331468 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1331406 GTTGACTTAG
1331416 CCATACGGAGTTCATTCCCACTCTAA
1 CCATACGGAGTTCATTCCCACTCTAA
*
1331442 CCATACGGAGTTCATTCCCAGTCTAA
1 CCATACGGAGTTCATTCCCACTCTAA
1331468 C
1 C
1331469 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.34, G:0.13, T:0.26
Consensus pattern (26 bp):
CCATACGGAGTTCATTCCCACTCTAA
Found at i:1332333 original size:26 final size:26
Alignment explanation
Indices: 1332303--1332355 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1332293 GTTGACTTAG
*
1332303 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
* *
1332329 GCATATGGAGTTGATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
1332355 G
1 G
1332356 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:1332913 original size:29 final size:29
Alignment explanation
Indices: 1332871--1332930 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
1332861 TCACGTGAAG
1332871 GCTTAAGGGACTATTGTATGAATTTACAA
1 GCTTAAGGGACTATTGTATGAATTTACAA
1332900 GCTTAAGGGACTATTGTATGAATTTACAA
1 GCTTAAGGGACTATTGTATGAATTTACAA
1332929 GC
1 GC
1332931 CATAAAAATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (29 bp):
GCTTAAGGGACTATTGTATGAATTTACAA
Found at i:1333275 original size:26 final size:26
Alignment explanation
Indices: 1333239--1333291 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1333229 GTTGACTTAG
1333239 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1333265 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1333291 G
1 G
1333292 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1334174 original size:26 final size:26
Alignment explanation
Indices: 1334144--1334196 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1334134 GTTGCCTTAG
1334144 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1334170 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1334196 G
1 G
1334197 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1336851 original size:26 final size:26
Alignment explanation
Indices: 1336815--1336867 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1336805 GTTGACGTAG
1336815 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
1336841 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
1336867 G
1 G
1336868 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:1337744 original size:26 final size:26
Alignment explanation
Indices: 1337708--1337760 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1337698 GTTGCCTTAG
*
1337708 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
1337734 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
1337760 G
1 G
1337761 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:1338757 original size:901 final size:897
Alignment explanation
Indices: 1329778--1348853 Score: 22750
Period size: 901 Copynumber: 21.5 Consensus size: 897
1329768 TTTTTCTTCA
* * ** * *
1329778 CCGGAGAACCTGACCTGCAGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGGTGTGCGTACA
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
* * *
1329843 TGATGTGTGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
66 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
1329908 AACTCACACCCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGT
131 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
1329973 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTAAAT
196 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
1330038 TTTTTTGTGCATGGCAACAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATC
261 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * ** **
1330103 CGAAAAAATTTTAAAAAATCCCGAACCGCAGAAGGTTTCAAAAATATTGAAAAATAGAAAACGAG
326 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
*
1330168 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAA
391 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
1330233 AATGGCATTGGCACGCAGACATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACG
456 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * ** *
1330298 GCTTGCGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCGCCCATCCGCTCGTTTCATCGGTT
521 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CCCGCCCGCCCGCTCGTTTCGTCGGTT
* **
1330363 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGGA-TAAGGG-T-T--------
584 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-AGACCGAGGGTTGTGGCAGCAG
* * * * * *
1330417 G-T-GGCAGCACGTAGAGGGGGACACGGCTGATCCTCGACTTGCGCATCCCGCCCCTCAGGCCGA
648 GATCGGCAGCACGCAGAGGGGGAC-CGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
1330480 CTGAGCACCCGCACACTCGTTTCGTCGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGC
712 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
** ** *
1330545 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTGGCACACACTGGACT
777 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * *
1330610 CGGGCATGTGCCGGTGCCTCA-TTTTCTTCGCCAGGGCACCATCGCCAGAGCATCG
842 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * *
1330665 CCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGCGGCCGGGGGCGGTGTGCGCAC
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGG-GGTGTGCGCAC
* * * * *
1330730 ATGATGTGCGATTGGTGCTGGTACTTGGCTCTTATACTGGCCCCCTATCGCTCATCAAACCTTGA
65 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* ** * ** *
1330795 CAACTCATGCCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCTTTAGCAATTAAAGTG
130 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
1330860 TCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
195 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
1330925 TTTTTTTGTGCATGCCAA-AAAAATAC-AGCGATAACGTCTACCAAGTTTGGGGCCAAAACTCCA
260 TTTTTTTGTGCATGCCAACAAAAATACAAG-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * ** * * * * *
1330988 TCCAAAAAAATTTTTAAAAATCTTGAATCGCAAAAGGTTTTGAAAATCTTAAAAAATAGAAAACG
324 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
* * * *
1331053 AGTCATCTTGCCATGAAACTTAACGTGAAGGCTTAAGGGACCATTGTCTGAATTTACAAACCATA
389 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
1331118 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATGCA
454 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* ** * * * *
1331183 CGGCTTGCGCATCTCACCTCTCTGGCCGTCATAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGG
519 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CCCGCCCGCCCGCTCGTTTCGTCGG
* * * *
1331248 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTAGCAGCA
582 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCA
* * * ** * * *
1331313 GGATCGACAGCACGTAGAGGGGGACCCGACCGATCCTTGGCTTACACATCCCACCCCTCTGGCCG
647 GGATCGGCAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * *
1331378 CCTGAGCACCCGAACTAC-CGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCCACTCTAA
711 GCTGAGCGCCCGCAC-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1331442 CCATACGGAGTTCATTCCCAGTCTAACATCGGATCAGACCGAGGGTTGCGGTAGCACATGCTGGG
775 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1331507 CTCAGGCACGTGCTGGTGCCGCATTTATCTTTGTCGGGGCACCATCGTCGGAGCATCG
840 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * * * *
1331565 TCGGAGAACCTGACCGGTGGCATTGGGGTTCTGATGATC-GGGGGGTCGGGGGGGTGTGCGTAC-
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
* *
1331628 --A--T--GATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
66 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
1331687 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTATCCATTAAAGTGT
131 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
1331752 CTGAAATGGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACTCTTCGATTTTTTAGCTGAAT
196 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
** * *
1331816 TTTTTTCAGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTC
261 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * ** * * *
1331881 CGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAG
326 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
* *
1331946 TCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAA
391 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * **
1332011 AATGGCTTTGGCATGCTGAAATATGAATATGTGCCTAAACCCACCTACCACTCTATCGATCCATA
456 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *** * *
1332076 GCTTGCACATCCCGTCTCTCTGGCCCAAGTAGTG--CCCGCCCGCCCGTTCATTTCGTCGGTTGG
521 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
1332139 CTTAGGCATACGGAGTTCATTCCTAGTC-AAGATCAGATCAGACAGAGGGTTATGGTAGCAGGAT
586 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGAT
** * * *
1332203 CGATAGCACGTAGAGGGGGACCAGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGTCGGCTG
651 CGGCAGCACGCAGAGGGGGACC-GGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * *
1332268 AGCGCCCGGAAGCTTGTTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
715 AGCGCCCGCACGCTCG-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * * * * *
1332333 ATGGAGTTGATTCCCAGCCTAAGATCGGATCGAACTGAGGGTTACGGCAACACATACTGGGCTCG
779 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* ** *
1332398 GGCATATGCTGGTGCCGCATTTTTCTTCGTCACGGCACCATC-ACTGGAGCATCG
844 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCG
* * * * * * *
1332452 CCGGAGAACCTGATCGGCGGCATTAGGGTTTCGATAATCGGGTGGGTCGGGGGGGGTGTGGGCAC
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGG-GGGGCCGGGGGGGTGTGCGCAC
* * *
1332517 ATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCTTTTCCCTCATCAAACCTCGA
65 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* *
1332582 GAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTG
130 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
1332647 TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAA
195 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
1332712 TGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTAGGGGCCAAAACCCCTT
260 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
1332777 CTGAAAAAATTTTAAAACATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAACGA
325 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
1332842 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCTTAAG
390 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA--G------G---G--------A-C-----
*
1332907 GGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAATATGAAGATGTGC
430 ---C-ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG-AAATATGAAGATGTGC
* * * *
1332972 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCTCATCCTGTCTCTCTGGTCGGTGTAGTG
490 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* * * * *
1333037 CCCACCCGCCCGCCCGCCCGCTTGTTGTGTCGGTTCGCTTAGGCATACAGAGTTCATTCCTAGTC
555 -CC-CCCGCCCGCCCGCTCG--T-TT-CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** * * * * * **
1333102 TGTGATCAGACCAGACTGAGGGTTATGGCAGCAAGATCCGCAGCACGCAGAGGTGGACCTGATCG
614 TAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC-GGCCG
* * * * * * * *
1333167 ATCCCCGGCTTACGCATCTCGCCCCTCTAGCCGGTTGAGCGCCTGTAAGCTCATTTTCGTGGGTT
678 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTT
*
1333232 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA
742 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
1333297 ACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGACATGTGCTAGTGTCGCATTTTTCTTC
807 ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* *
1333362 GCCGGGGCACCATCGTCGGATCATCG
872 GTCGGGGCACCATCGTCGGAGCATCG
* * * * ** *
1333388 CCGGAGAACGTGACCGACGGCCA-TGGGGTTTCGACGATCGGGGGCATCGGGGGGGAGTGTGCGC
1 CCGGAGAACCTGACCGGCGG-CATTGGGGTTCCGATGATCGGGGG-GGCCGGGGGG-GTGTGCGC
1333452 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
63 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
1333517 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAG
128 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
1333582 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTTGAGTTTTTAGCT-
193 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
1333646 AATTTTCTTGTGCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCC
258 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * ** *
1333711 TTCCGAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAT
323 TTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAC
* *
1333776 GAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCAT
388 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
1333841 AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCC
453 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
1333906 ACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCTCGCCCACCCGCCCGCTTACTCGTTTC
518 ACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-C-CCCGCCCGCCCG----CTCGTTTC
* * * * *
1333971 ATCGGTTCGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTATGG
577 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGG
* * ** ** *
1334036 CAACAGGATCAGCAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTCGCCCCTCT
642 CAGCAGGATCGGCAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * * * * *
1334101 AGTCAGCTGAACGCGCTCACGGTCAG-TTCGTGTGTTGCCTTAGGCATACGGAGTTCATTCCCAG
706 GGCCGGCTGAGCGCCCGCACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* *
1334165 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCAGCACATG
770 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
*
1334230 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCG
835 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * * * * * * *
1334293 CCGGAGAACCTGACCGACGGCATTAGGGTTTCGACGATCGGGGGTGCTGGAGGGGTGTGCACACA
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
*
1334358 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAG
66 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
1334423 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
131 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
1334488 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGATT
196 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
**
1334553 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAGAAA-AGCTT
261 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTT
* * * * *
1334617 CCAAAAAAATTTTGAAAAATCCTGAACC-TCAAAAAG-TTTCAAAATCATGAAAAATAGAAAACG
325 CCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
*
1334680 AGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
389 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * *
1334745 AAAATGGCATTGCCATGCGGAAATATTAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCA
454 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
1334810 TGACTTGCG-ATCCCGTCTCTCTGGCCGGCATAGTACCCGCCCGTCCGCCCGCCCGCTTGTTTCG
519 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCCC--CCGCCCGCCCGCTCGTTTCG
* * *
1334874 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTATGGC
578 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGC
** ** * * * * * ** *
1334939 AGCAGGATCGATAGCACATAAAGGGGGACCCGACCGATCCTCGACTTGTGCATCCCATCCCTCTA
643 AGCAGGATCGGCAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * **
1335004 GCCGGCTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGTGTACGGAGTTCATTCCCAGTC
707 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * ** ** *
1335069 TAAACATACGGAGTTCATTCCCAGCCTAAGATCGAACCGGACCGCA-TGTTCCGATAGCATGTAC
772 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG-AGGGTTGCGGCAGCACATGC
* * *
1335133 TAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGTCGGGGCACCATCGTCGGAGCATCG
836 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * * * ** *
1335195 TCGGAGAACCTGACCGACGGTATT-GGGTTCTGGCGATC-AGGGGGCCGGGGGGGTGTGCGCACA
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
* *
1335258 TGATGTGCGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTCGAG
66 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
1335323 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAAGTTTGCTGCCAGTAGCCATTAAAGTGT
131 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
1335388 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT
196 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * ** * * * * *
1335453 TTTTTCGTGCATGCCAAAAAAAATACAAGGATCAATTGTCCCAAGCTTGGGGCCAAGAGTCCTTC
261 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * *
1335518 CGAAAAAATTTTTACAAAATCCCGAACCCTAAAAAGTTTAGAAAATAGTGAATAATAGAAAACGA
326 CGAAAAAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
**
1335583 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAA
390 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
1335648 AAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCAAT
455 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * *
1335713 GGCTTGCACATCCCATCTCTCTGGCCGACGTAGTGCCAACCCGCCCACCAGCTCGTTTCATCGAT
520 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC--CCCGCCCGCCCGCTCGTTTCGTCGGT
* * *
1335778 TGGCTTAGGCATACGGAGTTCAGTCCCAGTCTGAGATCAGACCAGACCGAGGGTTGTGGTAGCAG
583 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAG
** * * * * *
1335843 GATAAGCAGCATGCAGAGGGGGACCCGGCCGATTCCCGGCTTGCGCATCCCGCCCCTCTCGTCGA
648 GATCGGCAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * * *
1335908 CTGAGTGCCCGCTCGCTTGTTTCGTGGGTTGACCTAGGCATACGAAGTTCATTCCCGGTCTAACC
712 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * ** *
1335973 ATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGATTTGCGATC-GCACATGCTGGGC
777 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG-GCAGCACATGCTGGGC
* * * *
1336037 TCGAGCATGTGCTGGTGCTGCATTTTTCTTTGTC--GG-------GTC--ACCATCG
841 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* ** * * * *
1336083 CCGGAGAACCTGATCGATGGCATTAGGGTTCCGATGATCGGGAGGGCAGAGGGGGTGTGCGCACA
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
*
1336148 TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
66 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * *
1336213 AACTCACACCTCCTTAAAGGGCATTTGAAATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGT
131 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
1336278 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCCAGTTTTTAGCTGAAT
196 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * * * * *
1336343 TTGTTTGTGCAAGCCAAAAAAAATAAAAAGATCACATATGCCAAGTTTGGGGCCAAAACTCCTTC
261 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
1336408 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
326 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
* *
1336473 TCGTCTTGCCATGAAACTGCACGTGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
391 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* **
1336538 AATGGCATTGCCACACAGAAATATGAAGATGT-CCTTAAACCCACCTACCACCCTATCGATCCAC
456 AATGGCATTGGCATGCAGAAATATGAAGATGTGCC-TAAACCCACCTACCACCCTATCGATCCAC
** * * *
1336602 GGCTTGCGCATCCTATCTCTCTGACCGGCGTAGT------GCCCGCTCGCTCATTTCGTCGGTTG
520 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * *
1336661 GCTTAGGCATACAGAGTTCATTCCCTGTCTAAGATCAAACCAGATCGAGGGTTG-GGACAGCAGG
585 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGG-CAGCAGG
* * * *
1336725 ATCAGCAGCATGTAGA---GG---GG--GA--CCCGGCCTGCGCATCCCGCCCCTCTGGCCGGCT
649 ATCGGCAGCACGCAGAGGGGGACCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
1336780 AAGC-CCCTGCACGCTCGTTTCGTTGGTTGACGTAGGCATATGGAGTTCATTCCCAGTCTAAGCA
714 GAGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * * *
1336844 TATGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAAGG-TGCCAGCAGCACATGCCGGGCT
778 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG-CGGCAGCACATGCTGGGCT
** ** *
1336908 CGGGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCA
842 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * * * * **
1336964 TCAGAGAACCTGATCGGCGTCATTAGGGTTCC-A--A-C-----GATC-GGGGGGTGTGCGCACA
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
*
1337019 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAG
66 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
1337084 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAAGTAATGTGT
131 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
1337149 CTAAAATAGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAAT
196 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
1337214 TTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTACCTAGTTTGGGGCCAAAACTCCATT
261 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TT
* * * * *
1337279 -C-AAAAAATTTTTAAAAATCCCGAACTGCAAGAAGTTTTGAAAATCGTGAAAAATAGAAAATGA
325 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
* * * *
1337342 GTCGTCTTGGCATGAAACTTTACGTGAAGGCTTAGGGGACCATTCTATGAATTTACAAGCCATAA
390 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
***
1337407 AAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
455 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
1337472 GGCTTGCGTATCCCATCTCTCTAGCCGACATAGTGCCCACCCGTCCACCTGCCCGCTCGTTTCGT
520 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CCCG--C-CC-GCCCGCTCGTTTCGT
* * ** *
1337537 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCAGACTGAGGGTTGCAGT
579 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGC
* * * * * * * * *
1337601 AGCAGGATCAGCAGCACGTAAAGGGGGACCCGACCGATCCCTGGCCTGCGTATCACACCCCTCTG
643 AGCAGGATCGGCAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * * *
1337666 GCCGACTGAGCGGCTGTACTCTCGTTTCGTGGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTC
707 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * *** *
1337731 TAAGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCGAGGCTTGCCATAGCTCATGCT
772 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * *
1337796 GGGCTCGGGCATATGCTGGTGCTGCATTTATCTTTG-CGGGGGCACCATCGTCGGAGCATCG
837 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCG
* * * *
1337857 CCAGAGAACCTGACCAGTGGAATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
* ** * ** *
1337922 TGATGTGCGATAGGTGCTGCCACTTGGCCCTTCTATTGGCTTCCTATCCCTCATCAAACCTCAAG
66 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
1337987 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
131 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * **
1338052 CTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGATTTTTTATTTGAAT
196 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * *
1338117 TTTTTTGTGCATGGCAAAAAGAAATACAGGGATCACATCTACCAAGTTTTGGGCCAAAACTCCTT
261 TTTTTTGTGCATGCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
**
1338182 CCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
325 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
* ** *
1338247 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTACAAATTTAGAAGCCATAA
390 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
1338312 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
455 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
1338377 GGCTTGCGCATCCCGTCTATTTGGCCGGCGTAGTGCTCCCCTGCCCGTCCGCTCTTTTCGTCGGT
520 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGC-CCCC-GCCCGCCCGCTCGTTTCGTCGGT
** ** * *
1338442 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTAGACCAAGGGTTGTGGCAGTAG
583 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAG
* * * ** * * * *
1338507 GATCGGCAACATGCAGAGGCGGACCGGATTGATCCTCGGCTTGCGCATCCTGCCCCCCGGGCCGG
648 GATCGGCAGCACGCAGAGGGGGACCGG-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
1338572 CTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGC
712 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * ** * * * * **
1338637 ATACGAAGTACATTCCCAACCTAAGATCAGACCAGACCAAGGGTTACGATAGCACATGCTGGGCT
777 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * * * * *
1338702 CGGGCATATGCTGGTGCTGGATTTTTCTTTGCCGGGGCACCATCGCCGGAGCATCG
842 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * * * *
1338758 TCAGAGAACCTGACCGGCGGCATTAGGGTTCCGGTGATCGGGGTGGCC--GGGGG-GTGCGCACA
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
* * ** * *
1338820 TGATGTGCGATGGGTGGTAGTACTTGGCCCTTATATTTTCCCCCTATTCCTTATCAAACCTCGAG
66 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * *
1338885 AACTCAAACCCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTACCGCCAGTAGCCATTAAAGCG
131 AACTCACACCCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
*
1338950 TCTGAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
195 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
1339015 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAAATCCTT
260 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
** * ** ** *
1339080 TTGAAAAAATTTTAAAAAATCCCGAACCGCAAAAA-TTTCAAAAATTATGAAAAACAGAAAACGA
325 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
*
1339144 GTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
390 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
1339209 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
455 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * ** *
1339274 GGCTTGCACATCCCGTCTCTCTGGCC-ACTGTAGTG--CCTGCCCGGTCGCTCCTTTCGTCGGTT
520 GGCTTGCGCATCCCGTCTCTCTGGCCGGC-GTAGTGCCCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * ** ** * *
1339336 GCCTAAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTGCAGTAGTAGG
584 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGG
* * * * * *
1339401 ATCAGCAGCACGCAGAGAGGGACCCGGTCGATCCCCGACTTGCGCATCTCGTCCCTCTGGCCGGC
649 ATCGGCAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
1339466 TGAGCGCCCTCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA-T-----TCT-----
713 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
1339520 T---G-G--------C---CTAAGATCGGACCAGACGGAGGGTTACAGCAGCACATGCTGGGCT-
778 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * *
1339569 GGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCATCGGAGCATCG
843 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * * * * ** *
1339624 TCAGAGAACCTAATCGGCGGCATTGGGGTTCTGGCGATC-GGGGGGTC-GGGGGGTGTGCGCACA
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
* * *
1339687 TGATGTGC-ATGGGTGCTGGTAGTTGGCCCTTATGTTGGGCTCCCTATCCCTCATCAAACCTCGA
66 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACCTCGA
* *
1339751 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCTAGTAGCCATTAAAGTG
130 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
1339816 TCTGAAATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAA
195 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* ** * * * *
1339881 TTTTTTTTTGCATGGTAAAAAAAAATACAGGGATCACGTCTACCAAGTTTTGGGCCAAAAATCCT
260 TTTTTTTGTGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * *
1339946 TTCAAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
324 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
* *
1340011 AGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATA
389 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
1340076 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
454 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
1340141 TGACTTGCGCATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCGCCCTCCCGTCCGCTCTTTTCG
519 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CCCG----CCCGCCCGCTCGTTTCG
* * * *
1340206 TCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCAGACCGAGGGTTGCGGC
578 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGC
** * * * * *
1340271 AGCAGGATCGGCAGCATACAGAGAGGGACCCGACTGATCCCCGGCTTACGCATCCTGCCCCTCTG
643 AGCAGGATCGGCAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * *
1340336 CCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATC
707 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * ** *
1340401 TAAGCATACGGAGTACATTCCCAGTCTAAGATCAGATCAG-TTGAGGGTTGCGGCAGAACATGCT
772 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * *
1340465 GGGCTC-GGC-----CTAGTTCCGCATTTTTCTTCGTC--GG----A--G-C--ATCAT--
837 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * * * *
1340507 -CGGAGAACTTGACCGGCGGCATTGAGGTTCCGGTGATCGGGGGGGCC-GGGGTGTGTGTGCACA
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
* * * ** *
1340570 TGATATGCGATGGGTGATGGAACTTGGCCCTTATATTTTCCCCCTATTCCTCATCAAACCTCGAG
66 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * * * * *
1340635 AACTCAAACCCCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCCGCCAGTAGCAATAAAAGCGT
131 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
1340700 TTGAAATAGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG-TTTT---TGAAT
196 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * *
1340761 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTCGGGGCCAAAAATCCTTT
261 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * *** * *
1340826 CGAAAAAA-TTTAAAAAATCCAGAATCGTAAAAAGTTTTCAAAAAATTAGGAAAATAAAAAACGA
326 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGT-GAAAAATAGAAAACGA
* *
1340890 GTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAA
390 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
1340955 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
455 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * *
1341020 GGCTTGCGCATCCCGTCTCTCTGGACGTCGTAGTG--CCCGCCCGCCCGTTCGTTTCCTCAGTTA
520 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTG
** ** * *
1341083 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATAGAGGGTTGTGGTAGTAGGA
585 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGA
* * * ** * * *
1341148 TCAGTAGCACACAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCC-ACCCTCTGGCCTGCT
650 TCGGCAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
1341212 GAGCGCCCTCACGCTCGTTTCTTGGGTTGACTTAGGCATACAGAGTTCATTCCC-GATCTAAG-A
714 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TCTAAGCA
1341275 T-C-G-G-----T--C---C----A---GA-C-G---GAGGGTTGCGGCAGCACATGCTGGGCTC
778 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * ** *
1341315 GAGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCA
843 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
*
1341370 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGTGCC-GGGGGGTGTGCGCACA
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
* *
1341434 TGATGTGCGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
66 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
1341499 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAGTGT
131 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
1341563 CAGAAATTGGGACACTTTTTTCAAATGGT--C---A-C-TGTACACTTCAAGTTTTTAGCTGAAT
196 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * * *
1341621 GTTTTTATGCATGGCAAAAAAAAATACAAGGATCACGTCTACCCAGTTTGGGGCCAAAACTCCAT
261 TTTTTTGTGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* ** *
1341686 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGA
325 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
1341751 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
390 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
1341816 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
455 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * *
1341881 GACTTACGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGGCCACCCGTCCGTTCGTTTCGT
520 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CCC-G---CCCGCCCGCTCGTTTCGT
** * * * * * * *
1341946 CGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCAAAGATCGGATCGGACTGAGGGTTGCGGTA
579 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCA
* * ** * * *
1342011 GCAGGATCAGCAGCACGCAGAGGTGGA-C--CCGA-------CTTATGCATCCCACCTCTCTGGT
644 GCAGGATCGGCAGCACGCAGAGGGGGACCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * * *
1342066 CGACTGAGCGCCCGCACGATCGTTTCATGGGTTGCCCTAGGCATAC-GATGTTCATTCCCAATCT
709 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCT
* * * * * * *
1342130 AAGCATACGAAGTTTATTCCTAGTCTAAGATCAGATCGGACCGAGTGTTGCGGCAGCACATTCTG
773 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTG
* * *
1342195 GGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTC-G-G-A---
838 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * * *
1342249 ----A-AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGAGGGGGGTTTGGGCAC
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCG-GGGGGGTGTGCGCAC
* * * *
1342309 ATGATGTGCAATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCTA
65 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* * *
1342374 GAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCAATTAAAGTG
130 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * * *
1342439 TCTGAAATTAGGG-CACTTTTTTCAAATGATCACAAAATCTTGTACAGTTCAAGTTTTTAGCTGA
195 TCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * * *
1342503 ATTTTTTTGTGCATGGCAAAAAGAAATACAGGGATCACATCTACCAAGTTTTGGGCCAAAACTCC
259 ATTTTTTTGTGCATGCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
*
1342568 TTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAAG--TT-----TC---AAAAAT------
323 TTCCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
* * * * **
1342617 -TA-TC-T-TT-CCATAAAACTTCACGTGAAGGCTTAAGGGATCATTGTACGAATTTACAAGAAA
387 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
1342677 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
452 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * **
1342742 CATGACTTGTGCATCCCGTCTCTCTGGCCGCCGTAGTG--CCCACCCGCCCACTCGTTTTATCGG
517 CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCGCCCGCCCGCTCGTTTCGTCGG
** * ** ** * *
1342805 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGAGAGAGGGTTGCAGTAGTA
582 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCA
* *
1342870 GGATCGGCAGCACGCAGAGGGGGGCTCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
647 GGATCGGCAGCACGCAGAGGGGGAC-CGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
*
1342935 GCTGAGCGCCCTCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG----TT--CA-T-T---
711 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* *
1342989 C-T-C---G----------GTCTAAGATCAGACCGGACAGAGGGTTGCGGCAGCACATGCTGGGC
776 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
*
1343039 TTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
841 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * * * *
1343096 CCAGAGAACCTGATCGGCGGCATTGGGGTTCCGGTGATCGGGGGTGCCGGGGGGTTGTGCGCACA
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
* * *
1343161 TGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCTAG
66 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
1343226 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCAATT-AAGTGT
131 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
1343290 CAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTTTAGCTGATT
196 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* *
1343355 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCATC
261 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * **
1343420 CAAAAAAATTTTAAAAAATCCCGAACCGTCAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
326 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
1343485 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
391 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
1343550 AATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
456 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
*
1343615 GCTTGCGCATCCCGTCTCTC-GGCCGACGTA--G----CGCCCGCCCGCTCGTTTCGTCGGTTGG
521 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
1343673 CTCAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGAT
586 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGAT
* * * * * * *
1343738 CAGTAGCACACAGAGGGGGA-C--CC-A------GCTTACGCATCTCGCCCCTCTGGTCGACTGA
651 CGGCAGCACGCAGAGGGGGACCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
1343793 GCGCCCGCACGCTCGTTTCGTGGGTTGCCTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATAC
716 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* ** **
1343858 AGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATTTTGGGCTCAAG
781 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
1343923 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA-C--C--A-C--CG
846 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * * * * ** *
1343964 CCGGAGATCCTGATCGACGGCATTGGGGTTCC-AGCGAT-TGTTGGG--GGGGGGGTTTGCGCAC
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-TGATCGGGGGGGCCGGGGGGGTGTGCGCAC
* *
1344025 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTA
65 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
1344090 GAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
130 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* *
1344154 TCTGAAATTGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
195 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
1344219 TTTTTTTGTGCAT--------TAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAACTCCTT
260 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
*
1344276 CCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAAG--TT-----TC--G-AAAAT------C-
325 CCGAAAAAATTTTAAAAAATCCCGAACCGT-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
* * *
1344324 A----TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTAAAAGGCATA
389 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * *
1344385 AAACTGGCATTGGCATGTAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTAGCGATCCA
454 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * ** *
1344450 CGACTTGCGCAACCCGTCTCTCTGGCCAGCGTAGTGCTCGTCCGCCACCCTGCCCGCTTATTTCT
519 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C--CC-CCGCCC-GCCCGCTCGTTTCG
* * * ** ** **
1344515 TCGGTTGTCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACTAAGGGTTACGAT
578 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGC
* * * * ** * *
1344580 AGTAGGATCGGTAGTACGCAGAGGGGGACCCGGTCGATCCCCGGCTTAAGCATCCCACCCTTCTG
643 AGCAGGATCGGCAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * * *
1344645 GCCGGTTGAGCGGCCGCACTCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTCATTTCCAATC
707 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* ** *
1344710 TAAGCATACGGAGTTCACTCCCAGTCTAAGATCGGATTGGACCGAGGGTTACGGCAGCACATGCT
772 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
** * ** * * *
1344775 GGGCTCGGGCACATGTTGGCACCGTATTTTTCTTCATCAGGGCACCATCGTCGGAGCATCG
837 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * * * * * *
1344836 TCGGAGAACCTGACCGACGGCATTAGGCTTTCGGTGATCGGAGGGGCCGGGGGGGTGTGCGCACA
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
** *
1344901 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTTCCCCCTATCCCTCATCAAACCTCAAG
66 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
1344966 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCGTTAAAGTGT
131 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
1345031 CTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAT
196 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * *
1345096 GTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCGTC
261 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
1345161 CGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACAAG
326 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
*
1345226 TCGTCATGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
391 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*** * *
1345291 AATGGCATTGGCACATAGAAATATGAACATGTGCATAAACCCACCTACCACCCTATCGATCCACG
456 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * **
1345356 CCTTGCGCATCCCGTCTTTCTGGTCGGCGTAGTGCCCGCCCGCCC-ACCGGTCGTTTTC-TTTGT
521 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CC-CCCGCCCGCCCGCTCG-TTTCGTCGGT
* * * *** * *
1345419 T-GCTTTGAGGCATAACAGAGTTCATTCCTAGTCTAAGATTAGATTGGACTGAGGGTTTGTCGCA
583 TGGC-TT-AGGCAT-ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG-TTGTGGCA
* * ** *
1345483 GCA-GA-CTGACAGCACACAGA-GGGGACCCGGCCGATTCCCTAGCAT--GCATTCCCG-CCCTC
644 GCAGGATC-GGCAGCACGCAGAGGGGGA-CCGGCCGA-TCCCCGGCTTGCGCA-TCCCGCCCCTC
* ** *
1345542 TAAGCCGGCTTG-GCGTTCGCTACGCTCATTTCGTGGGTTGAACTTAGGCATACGGAG-----T-
705 T-GGCCGGC-TGAGCGCCCGC-ACGCTCGTTTCGTGGGTTG-ACTTAGGCATACGGAGTTCATTC
* * * *
1345600 ----TC--A--AT-----G-----TCCCA-CCTAAGAT-TGACCAGACCGATGGTTGCGGCAGCA
766 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCA
*
1345645 C-TGCTGGGCTC-GGCATGT-AT-G-GCCGAC-TTTTT-TTCGTCGGGGCACCATCGTCGGAGCA
831 CATGCTGGGCTCGGGCATGTGCTGGTGCCG-CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA
*
1345703 ACG
895 TCG
* * * * * * *
1345706 CCAGAGAA-CTAACCGACGGCATTAGGGGTTCCGGTGGT--AGGGGGCC-GGGGGGTGTGAGCAC
1 CCGGAGAACCTGACCGGCGGCATT-GGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCAC
* * *
1345767 ATGTTGTGCGATGGGTGCTGGTACTTGG-CCTTATATTGGTCCCCTACCCCTCATCAAACCTCG-
65 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
1345830 CAACTCACA-CCCCTTAAA-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
130 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
1345893 TCTGAAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCCGAA
195 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * * *
1345958 TGTTTTTGTGCATGCCGACAAAAATACAAGGATCTCGTCTACCAAGTCTGGGGCCAAAACTCCAT
260 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * *
1346023 CCGAAAAACTTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGA
325 CCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGA
* *
1346088 GTCGTCTTGCCATGAAACTTCACCTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
390 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
1346153 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCAT
455 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
1346218 GGCTTGTGCATCCTGTCTCTCTGGCCGGCGTAGTTCCCGCCCGCCCGCCCGCCCGCTCGTTTCGT
520 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAG-T---G-CC-CCCGCCCGCCCGCTCGTTTCGT
* * *
1346283 CGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTA
579 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCA
* * * * *
1346348 GCAGGATCGACAGCACGCAGAGGGGGACCCAGCCTATCCCCGGCTTACGCATCTCGCCCCTCTGG
644 GCAGGATCGGCAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * * * *
1346413 CTGGCTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAAGCATACAGAGTTCATTTCCATTCT
708 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
** * * * * * *
1346478 AAGCATACAAAGTTCATTCCCAATCTAATATCGGACCGGATCAAGGGTTG-GGATAGCACTTGCT
773 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG-CAGCACATGCT
* ** **
1346542 GGGCTCGTGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCGTC-G-G-A---
837 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * * * * *
1346597 ----A-AACCTGACCGGCGGCATTGGCGTTCCAACGATTGGGGGGGCC-GGGGGGTGTTCTCACA
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
* *
1346656 TGATGTGCAATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
66 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * *
1346721 AACTCGCACCCCCTTAAAGAGCATTTGAGA-TTTATAGGCTTGCTGCCAGTAGCTATTAAAGTGT
131 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
1346785 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGTGTTTCTAGCTGAAT
196 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
1346850 TTTTTTGGGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
261 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* ** * * ** * *
1346915 TGAAAAAATTTTAAAAAATCTTGAACCGCAAACAGTTTCAAAAATCGTGAAAAATAAAAAATGAG
326 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
* * *
1346980 TCATCTTGGCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAA
391 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
** * *
1347045 AATGGCATTGGCACACAGAAATATGAAGATATACCTAAACCCACCTACCACCCTATCGATCCACG
456 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
1347110 GCTTGCGCATCCCGTCTCTCCGGCCGGCGTAGTG--CCCGCCCGCCCGCTCATTTCGTCAGTTGG
521 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *
1347173 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGATCGGATCGAGGGTTGTGGCAGCAGGA
586 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACCGAGGGTTGTGGCAGCAGGA
* * * *
1347237 TCGGCAGAACTCAGAAGGGGACCCGGCCGATCCCCGGCTTGGGCATCCCGCCCCTCTGGCCGGCT
650 TCGGCAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
1347302 GAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGG-GATTAATTCCCAATCTAAGCA
714 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG-TTCATTCCCAGTCTAAGCA
* * * **
1347366 TACGGAGATCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACAAACTGGGCTC
778 TACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
*
1347431 GGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
843 GGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * * * * * *
1347486 CCAGAGAACCTGACCGGTGACATTGGGCTTCCGACGATC-GGGGGGCCCGGGGGGTGTGCACACA
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
* * * *
1347550 TGATGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAG
66 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
1347615 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGT
131 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
1347680 CTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGATT
196 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-A
* * *
1347745 TTTTTTTGTACAAGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTG
260 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-
* * *
1347810 T-CGAAAAAATTTTTAAAAATCCTGAACCCTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
324 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
*
1347874 AGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
389 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * **
1347939 AAAATGGCATTGGCATGTAAAAATATGAAGATGTGCCTAAACCCACCTACGGCCCTATCGATCCA
454 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* *
1348004 CGGCTTGCGCATCCCATCTCTCTGGCCGACGTAGTGCCCGCTCGCCCTCTCGCCCGCTCGTTTCG
519 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-C-CG--C-C-CGCCCGCTCGTTTCG
* *
1348069 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGATGTGGC
578 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGC
* * ** ** *
1348134 AGCCGAATCGGCAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTG
643 AGCAGGATCGGCAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * * *
1348199 GCTGGCTGAGCGCCCGCACGCTCATTTCAT--G-AGACTTAGGCATATGGAGTTCATTCCTAGTC
707 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * ** *
1348261 TAAGCATACAGAGTTCATTCCCAGTCTACGATCAGACCGGACCGAGGGTTGCGGCAGCAGTTGTT
772 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * **
1348326 GGGCTTGGGTATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCG
837 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
* * * *
1348387 TCGGAGAACCTGATCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCC-GGGGGGTGTGCGCACA
1 CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
* * * *
1348451 TGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAATCTTGAG
66 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
1348516 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCCTTAAAGTGT
131 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
1348581 CTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
196 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* **
1348646 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTACGGCCAAAACTCCTTC
261 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* ** *
1348711 CGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTCAAAATCGTGAAAAATAGAAAACGAG
326 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
* *
1348776 TCGTCTTGCCATAAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
391 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
1348841 AATGGCATTGGCA
456 AATGGCATTGGCA
1348854 CTCAAAAAGA
Statistics
Matches: 15703, Mismatches: 1948, Indels: 1063
0.84 0.10 0.06
Matches are distributed among these distances:
837 137 0.01
838 8 0.00
840 1 0.00
841 87 0.01
842 2 0.00
843 1 0.00
844 28 0.00
845 2 0.00
846 1 0.00
847 1 0.00
848 12 0.00
849 76 0.00
850 185 0.01
851 135 0.01
852 41 0.00
853 66 0.00
854 2 0.00
855 5 0.00
856 107 0.01
857 75 0.00
858 27 0.00
859 67 0.00
860 27 0.00
861 397 0.03
862 32 0.00
863 403 0.03
864 467 0.03
865 213 0.01
866 345 0.02
867 324 0.02
868 257 0.02
869 319 0.02
870 521 0.03
871 261 0.02
872 42 0.00
873 7 0.00
874 50 0.00
875 105 0.01
876 450 0.03
877 68 0.00
878 240 0.02
879 96 0.01
880 6 0.00
881 122 0.01
882 130 0.01
883 452 0.03
884 199 0.01
885 87 0.01
886 108 0.01
887 614 0.04
888 282 0.02
889 264 0.02
890 351 0.02
891 743 0.05
892 29 0.00
893 387 0.02
894 144 0.01
895 92 0.01
896 422 0.03
897 397 0.03
898 155 0.01
899 610 0.04
900 569 0.04
901 816 0.05
902 528 0.03
903 587 0.04
904 441 0.03
905 404 0.03
906 230 0.01
907 44 0.00
908 3 0.00
910 3 0.00
916 2 0.00
917 2 0.00
925 2 0.00
926 39 0.00
927 71 0.00
928 1 0.00
931 13 0.00
933 1 0.00
934 3 0.00
935 37 0.00
936 430 0.03
937 193 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACA
TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGAT
CGGCAGCACGCAGAGGGGGACCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCG
Found at i:1340414 original size:26 final size:26
Alignment explanation
Indices: 1340378--1340430 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1340368 GTTGACTTAG
*
1340378 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTACATTCCCAATCTAA
*
1340404 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAATCTAA
1340430 G
1 G
1340431 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAATCTAA
Found at i:1342136 original size:26 final size:26
Alignment explanation
Indices: 1342106--1342158 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1342096 GTTGCCCTAG
*
1342106 GCATACGATGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* * *
1342132 GCATACGAAGTTTATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1342158 G
1 G
1342159 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:1344737 original size:26 final size:26
Alignment explanation
Indices: 1344688--1344739 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1344678 TTGACTTAGC
* *
1344688 CATACGGAGTTCATTTCCAATCTAAG
1 CATACGGAGTTCACTCCCAATCTAAG
*
1344714 CATACGGAGTTCACTCCCAGTCTAAG
1 CATACGGAGTTCACTCCCAATCTAAG
1344740 ATCGGATTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCACTCCCAATCTAAG
Found at i:1346491 original size:26 final size:26
Alignment explanation
Indices: 1346451--1346505 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
1346441 TGGGTTGACT
* * *
1346451 TAAGCATACAGAGTTCATTTCCATTC
1 TAAGCATACAAAGTTCATTCCCAATC
1346477 TAAGCATACAAAGTTCATTCCCAATC
1 TAAGCATACAAAGTTCATTCCCAATC
1346503 TAA
1 TAA
1346506 TATCGGACCG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.24, G:0.09, T:0.31
Consensus pattern (26 bp):
TAAGCATACAAAGTTCATTCCCAATC
Found at i:1347379 original size:26 final size:26
Alignment explanation
Indices: 1347337--1347389 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1347327 GTTGACTTAG
1347337 GCATACGGGATTAATTCCCAATCTAA
1 GCATACGGGATTAATTCCCAATCTAA
* *
1347363 GCATACGGAGA-TCATTCCCAGTCTAA
1 GCATACGG-GATTAATTCCCAATCTAA
1347389 G
1 G
1347390 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGGATTAATTCCCAATCTAA
Found at i:1352054 original size:733 final size:717
Alignment explanation
Indices: 1350479--1352429 Score: 2606
Period size: 733 Copynumber: 2.7 Consensus size: 717
1350469 GGCGGATCCG
* * *
1350479 GGGGGCCGGGTGGGGTGTGCGCACTTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
1 GGGGACCGGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGC
* *
1350544 CCCCTATCCCTCAACAAACCTCGAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGT
66 CCCCTATCCCTCATCAAACCTCAAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
1350609 TTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTT
131 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * * * * *
1350674 TTTCATTTCGATTTTTTAGCTGAATTTTTTGGTGCATGCCAGCAAAAATACAAGGATCACGCGTA
196 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTC-TA
** * * *
1350739 CCAAGTTTGAAGCAAAAACTCCTTCCG-AAAAATTTTTAAAAATCTC-AGACCGTAAAAAGTTTC
260 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGA-ACCGCAAAAAGTTTC
* *
1350802 AAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGAC
324 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
1350867 CATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA
389 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
1350931 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCATAGTGCCCGC
454 -CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCATAGTG-CCGC
* * ** * ** *
1350996 CTACCTGCCTGCCTGCTCATTTTATCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
517 CTACATGCCTGCATGCTCATTGCATCGATTGGCTTAAGCATACAAAGTTCATTCCCAATCTAAGA
* ** * *
1351061 CAAGACCAGACTGAGGGTTCCGGCAGTACATGCTAGGCTCGGGCATGTGCTGGTACCGCATTTTT
582 CAAGACCAGACTGAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTGGTACCGCATTCTT
* * * *
1351126 CTTCATCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACTGGCGGCATTGGGGTTTCGAT
647 CTTCATCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGCACTGGGGTTTCGAT
*
1351191 GATCGG
712 GATCGA
* * *
1351197 GGGGACCGGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTAGTACTTGGCCCTTAAATTGGC
1 GGGGACCGGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGC
* * * * * *
1351262 CCCCTATCCCTGATCGAACCTCTAGAACTCACACTCCCTTAAAGAGCATTTGAGATTTTATAGCT
66 CCCCTATCCCTCATCAAACCTCAAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGT
*
1351327 TTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
131 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
1351392 GTACACTTCGAGTTTTTAGCTG-ATTTTTTTATGCATGCCAACAAAAATACAAGGATCACATCTA
196 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-TCTA
* **
1351456 CCAAGTTTGGGGCCAAAATTCCTTTTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
260 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCA
*
1351521 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAAGGGACC
325 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
1351586 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGCTGTGCCTAAAC
390 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * * *
1351651 ACACCTACCATCCTATCGATCCGCGGCTTGAGCATCCCGTCTCTCTGGTCGGC-TA-TG-CGTCT
455 -CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCATAGTGCCGCCT
* * *
1351713 GCATGCTTGTTTCATGGGTCGACTTAGGCATACGGAGTTCATTCCCGG-TCTAAGCATACAAAGT
519 ACATGCCTG---CAT-GCTC-A-TT--GCAT-C---G---ATT---GGCT-TAAGCATACAAAGT
*** * *
1351777 TCATTCCCAATCTAAGATTGGACCAGA-TCGAGGGTTACAATAGCACATGCTGGGCTCGGGCATG
565 TCATTCCCAATCTAAGACAAGACCAGACT-GAGGGTTACAACAGCACATGCTAGGCTCGGGCATG
* * * ** * **
1351841 TGCTGGTGCCGTATTCTTCTTCGTCGGGGCACCATCATTGGAGTATCGTCGGAGAACCTGACCGA
629 TGCTGGTACCGCATTCTTCTTCATCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGA
1351906 CGGCACTGGGGTTTCGATGATCGA
694 CGGCACTGGGGTTTCGATGATCGA
* * * * *
1351930 GGGG-TCGAGGTGGGGTATGCGCACATGATATGCGATGGGTGCCAGTAGTTGGCCCTTATATTGG
1 GGGGACCG-GGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG
*
1351994 CCCCCTATCCCTCATCAAACCTCAAAAACTCACA-ACCCCTTAAAGAGCATTTGAGATTTTACAG
65 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACA-CCCTTAAAGAGCATTTGAGATTTTACAG
1352058 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC-CTTTTTTCAAAATGGTCACAAAAT
129 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAAT
* ***
1352122 CTTGTACACTTCGAGTGTTTAAGCTGAATTTTTTTGTGCATGCCAAC--AAATACAAGGATTTTG
193 CTTGTACACTTCGAGT-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA-TCAC
* *
1352185 TCTACCAAGTTTGGGGCCCAAAACT-CTTCCGAAAAAATTTTAAAAAATCTTGAACCAC-AAAAG
256 TCTACCAAGTTTGGGG-CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAG
* *
1352248 TTTC-GAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
320 TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
1352312 GGACCATTGTATGAACTTACAAGCCA-ATAAAATGGCATTGTCATGCAGAAATATGAAGATGTGC
385 GGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
** *
1352376 CTAAAGCCACCTACCACCCTATCGATCCATAGCTTGCGTATCCCGTCTCTCTGG
449 CTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
1352430 CCGACGTAGT
Statistics
Matches: 1085, Mismatches: 114, Indels: 55
0.87 0.09 0.04
Matches are distributed among these distances:
715 10 0.01
717 59 0.05
718 320 0.29
719 91 0.08
720 1 0.00
721 2 0.00
723 2 0.00
724 1 0.00
727 1 0.00
730 4 0.00
731 162 0.15
732 22 0.02
733 375 0.35
734 16 0.01
735 19 0.02
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (717 bp):
GGGGACCGGGTGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCAAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACTCTAC
CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAA
AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGACGGCATAGTGCCGCCTAC
ATGCCTGCATGCTCATTGCATCGATTGGCTTAAGCATACAAAGTTCATTCCCAATCTAAGACAAG
ACCAGACTGAGGGTTACAACAGCACATGCTAGGCTCGGGCATGTGCTGGTACCGCATTCTTCTTC
ATCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGACCGACGGCACTGGGGTTTCGATGATC
GA
Found at i:1352670 original size:26 final size:26
Alignment explanation
Indices: 1352634--1352686 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1352624 GTTGACTTAG
* *
1352634 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
1352660 GCATACGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
1352686 G
1 G
1352687 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:1353087 original size:26 final size:26
Alignment explanation
Indices: 1353058--1353110 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1353048 GTTGACTTAG
* * *
1353058 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTCCAATCCCAATCTAA
*
1353084 GCATACAGAGTCCATTCCCAATCTAA
1 GCATACAGAGTCCAATCCCAATCTAA
1353110 G
1 G
1353111 ATCGAATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTCCAATCCCAATCTAA
Found at i:1355636 original size:26 final size:26
Alignment explanation
Indices: 1355600--1355650 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
1355590 GTTGACTTAG
1355600 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1355626 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
1355651 GGATTGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1356531 original size:26 final size:26
Alignment explanation
Indices: 1356495--1356545 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1356485 GTTGACTTAA
*
1356495 GCATACTGAGTTCATTCCCAGTCTAG
1 GCATACGGAGTTCATTCCCAGTCTAG
1356521 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
1356546 AGATCGAACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAG
Found at i:1359743 original size:900 final size:899
Alignment explanation
Indices: 1353800--1367001 Score: 16965
Period size: 896 Copynumber: 14.7 Consensus size: 899
1353790 GTTGGCTTAG
* * **
1353800 GCATATGGAGTTCATTCCCAGTCTAAGATCAGAATCAAGG-CCGAGGGTTTGGCGATAGCACATG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-A-C-CGGACCGAGGG-TT-GCGGCAGCACATG
* *
1353864 CT-GGCTCGGGCATGTGCTGGTGCCATATTTTTCTTTGTCGGGGCACCA---T-------T-GTC
61 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* ** * *
1353917 AGAGAACCTGACCGACGGCATTGGGGTTTTGACGATCGGGGGGGTCGGGGGGGTGTACGCACATG
126 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATG
* * *
1353982 AATGTGGCGATAGGTTGCAGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
190 -ATGT-GCGAT-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
*
1354047 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTG
252 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
1354112 TCTAAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAA
317 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * *
1354177 -TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTA-AAACGTTTGGGGCCAAAACACCT
382 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCT
* * *
1354240 TCCGAAAAAA--TT-AAAAAT-CCGAA-CGCAAAAAGTTTCAAAAATCAT--AAAATAAAAAAAC
446 TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT-AGAAAAC
* *
1354298 GAGTCGTCTTGCCATGAAGCTTCA-GTGAAGGCTT-AGGGACCATTGTATGAATTTATAAGCCAT
510 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
1354361 AAAAATGGCATTGGCATGTAGAAAATATGAAGATGGGGCCTAAACCGACCTACCACCCTATCGAT
575 AAAAATGGCATTGGCATGCAG-AAATATGAAGAT-GTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * * *
1354426 CCCACGGCTTGCGCATCCCGTTCTCCTCTTGCCGG-ATATGGTGTTCGGCCTGCACGTCCGCATC
638 -CCACGGCTTGCGCATCCCG-TCT-CTCTGGCCGGCGTA--GTG-CCCGCCCGCCCGCCCGC-TC
* * ** ** *
1354490 ATTTCATCGGTTGGCTTAGGCATACATACGTTTTCCATTCCCCCAGTCCCCCTAAGATTGGCCCA
696 GTTTCGTCGGTTGGCTTAGGCATACGGA-G--TT-CATT--CCCAGT----CTAAGATCAGACCA
* * * * *
1354555 GACTGAGGGTTGCAGCAGTAGGGATCGGTAGCCACGTAGAGGGCAGACCCGATCGATCCCCGGCT
751 GACTGAGGGTTGCAGCAGCA-GGATCGGCAG-CACGCAGAGGG-GGACCCGACCGATCCCCGGCT
* * * * * * *
1354620 TGTGCATCCTGCCCTTCTAGGTCGGCTGAACCCCCGCACGCTCGTTTCCGTGGGTTGACTTAGGC
813 TGCGCATCCCGCCCCTCT-GGCCGGCTGAGCGCCCGCACGCTCGTTT-CATGGGTTGACTTAGGC
1354685 ATACGGAGTTCATATCCCAGTCTAA
876 ATACGGAGTTCAT-TCCCAGTCTAA
* * *
1354710 GCATGACAGAGTTCCATTCCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATACT
1 GCAT-ACGGAGTT-CATTCCC-AGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCT
* * * * * * *
1354775 GGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTGGCCAGGGCACCATCATCGGAGCATCGTCAG
63 GGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGG
* * * * **
1354840 AGAACCTGACCGATGGCATTGGGGTTACGCCGATCGAAGGGGTCGAGGGGGGGTGTGCGCACATG
128 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCG--GGGG-GGCCGGGGGGTGTGCGCACATG
* *
1354905 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAG
190 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
1354970 CTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCGAGAAGCCATTAAAGTGTTT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
1355035 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTC
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-
* * * *** *
1355099 TTTTTGTGCATACCAAAAAAAATACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACGATTTCT
384 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* **
1355164 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGT
449 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
1355229 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
514 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
1355294 ATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCGTATCAATCCACGG
579 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
*
1355359 CTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCACCCGCCCGCTCGCCCGCTCACTCG
644 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCG--C-C-CGCCCG----CTCG
* ** * * * *
1355424 TTTTGTTAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAACATCAGATCAGACCGAGGGTT
697 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
* * ** * * ** *
1355489 GCAGTAGTAAAATTGACAGCACATAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
762 GCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
** *
1355554 CTCTGGCC-AATGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCC
827 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
1355618 CAGTCTAA
892 CAGTCTAA
* ** * *
1355626 GCATACGGAGTTCATTCCCAGTCTAGGATTGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
1355691 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGTAGCGTCG-CTGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAG
* ** * * *
1355755 AACCTGACCGACAGCATTGGGGTTCCGGTGATCGGGGGGGCTGGGATGGTTTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGTGTGCGCACATGATGT
**
1355820 GCGAACGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
1355885 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1355950 TGGGGACACCTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
1356015 ATGCATGCCAA-AACAAAAACAAGGATCACATCTTCCAAGTTTGGGGCCAAAACT-CTTGTCGAA
389 GTGCATGCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCGAA
* * * * *
1356078 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTATCGAAGATCGTGAAAAATAGAAAACGAGTCAT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
1356143 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1356208 GCATTGGCACT-CAGAAATATGAAGATGTGCCTAAACCCA-CTGACCACCCTATCGATCCACGGC
582 GCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCACGGC
* * * *
1356271 TTGCGCATTCCGTCTCTCTGGCTGACGT-GT----GCCCGCCCGCCTGCTCGTTTCGTCGGTTGG
645 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *** *
1356331 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGA-TCGAGGGTTGCATTGGCAAGA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCAGCAGCAGGA
** * * * * * * *
1356395 TCAACAGCACACA-AGGGGGACCTGATCTATCCCCGGCTTGCGCATCCCACCCATCTGGCCCGCT
774 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * * *
1356459 GAGCACCTGCACGCTCATTTTAATGGGTTGACTTAAGCATACTGAGTTCATTCCCAGTCTAG
839 GAGCGCCCGCACGCTC-GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1356521 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCTAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
*
1356585 GCTCGGGCATGTGCTGGTGCCACAATTTTCATT-GTCGGGGCACCATCGTCGGAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTC-TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
* * * **
1356649 GAACCTGATCGACGACATTGGGGTTACGACGATCGGGGGGTCGAGGGGGGGTGTGCGCACATGAT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG--GCCGGGGGGTGTGCGCACATGAT
*
1356714 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
1356779 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
1356844 AATGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
1356909 TTATGCATGCCAAAAAAAATACAAGGATCACATCTTCCAAGTTTGGGGCCAAAACT-CTTGTCGA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CCGA
* * *
1356973 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTATCGAAGATCGTGAAAAATAGAAAACGAGTCG
451 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
1357038 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
1357103 GGCATTGGCATGTAGAAATATGAAGATGTGCCGAAACCCATCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
1357168 TGTGCATCTCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCATCAGT
646 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCGCCCGCTCGTTTCGTCGGT
* * * * * *
1357233 TGGCTTAGTCATATGGAGGTCATTCCTAGTCTAAGATCAGACCAGA-TCGAGGGTTGC-GATAGT
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCAG-CAGC
** * * * * *
1357296 AGGATCGATAGCACACAGAGGGGGATCCGATCGATCCCCGGCTTGCGCATCCTGCCCGTCTGGCC
770 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
1357361 AGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC---G---A-----AG--T--
835 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
1357411 ---T-C--AG-----TCCCAGTTTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCACGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
1357465 CTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCA---TC---G---C-T-GGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
1357519 ACCTGACCGACGGCATTGGGGTTCC-AGTGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
1357583 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
1357648 ACCCCTTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
1357713 GGGGACACTTTTTTCAAATGGTCACCAAGTCTTGTACACTTTGAGTTTTTAGCT-AATTTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA--TTTTTT
* * ** *
1357777 TTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGCAGCAAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** *
1357842 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATAAGTTGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
1357907 TTGCCATGAAACTTCATGTAAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** *
1357972 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** *
1358037 CGTATCCCGTCTCTCTGGTCGACGTAGTGCCCGGTCGCCTGCCCGCTCGTTTCGTCGGTTGGCTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
** * * ***
1358102 AGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGGTCGGACTAAGGGTTATGGCAGCAGGATCG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCAGACTGAGGGTTGCAGCAGCAGGATCG
* * * * * * * *
1358166 GCAGCATGCAGAGGGGGACCTGACTGATCCCTGGCTTGCGCATCCCACCTCTCTAGCTGGCTGAG
777 GCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
1358231 CGCCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
842 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
1358289 GCATAAGAAGTTCATTCCCAGTATATGATCAGACCGGACCGAGGGTTACGGCACCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * *
1358354 CTTGGTCTTGTGCTGGTGCCGCATTTTTCATCATCGGGGCACCATCGTCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
*
1358419 ACCTGACC-AGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCACACATGATGT
131 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
1358482 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
1358547 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
1358612 TGGGGACACTTTATTCAAATGGTCACAAAATCTTATACACTTCGAATTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
1358677 GTTCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTTCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
*
1358742 AATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * * *
1358807 TGCCACGAAACTTCATGTGAAGGCTTAAGGGACCATTCTATCAATTTACAAACCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
1358872 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
1358937 GCATCTCGCCTCTCTGGCCGGCGTATTGCCTGCCCACCCGCCCGCTCGCTTCGTCGGATGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * *
1359002 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCAGCAGCAGGATTGGT
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCGGC
* * * * ** * *
1359067 AGCATGCAGAGGGGGACCTGGCCGATCTCCATCTTACGCATCCCGCACCTCTGGCCGGCTGAGCG
779 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
1359132 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
844 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
1359188 GCATA-GAAAGTTCATTTCGAGTCTAAGATCATATCAGACCGAGGGTTGTGGCAGCCCATGTTGG
1 GCATACG-GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * **
1359252 GTTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * *
1359317 AACCTGATCGACGGCATTGGGGTTCCGAAGATCGGGGGGGCCGAGGGGGTGGGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGT
* *
1359382 GCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGATAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1359447 CCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** * *
1359512 TGGGGACACTTTTTTCAAATGGTCACAAAAAATTGTACACTTCGAGTGTTTAGCTAAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
1359577 GTGCATGCCAATAAAAATACAAGGATCCCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** * * *
1359642 AATTTTAAAAAATCCTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAATCATCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* **
1359707 TGCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
***
1359772 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
1359837 GCATCCCGCCTCTCTGGCCGACGTAGTGCTCGCCCGCCCTCCCGTCCGCTCGTTTTGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTA--G-T-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
** * * * * * * * *
1359902 CTTAGGCATACAAAGTTCATTCCAACTCTAAGATCGGACCGGA-TCACGAGTTGCAGCAGCTGAA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA-GGGTTGCAGCAGCAGGA
* * * * * * *
1359966 TTGGCAGCATGCAGAGGGGGATCCGATCGATCTCCGGCTTGCGCATCCCACCCCTCTGGCTGGCT
774 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
** * * *
1360031 GAGCGCCCGCACTTTCATTTCATGGGTTGACTTAGGCACACGGAGTTCATTCCCAGTCTCA
839 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * *
1360092 GCATACAAAGTTCATTCCGAGTCTAAGATCTGACTGGACCAAGGGTTGTGGCAGCCCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * *
1360157 TTCGGGTAGGTGCTGGAGTCGCATTTTTCTTCGCCAGGGCACAATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
1360222 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTGTGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGT
*
1360287 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
1360352 CACCCCCTTAAAAAGCAATTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
1360417 TGGGGACACATTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGATGAATTTTTGT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
1360482 GTGCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTACTTCCG-AAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * * *
1360546 AATTTTAAAAAATCTTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC-
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
1360610 TACCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGG
519 TGCC-ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
1360675 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** *
1360740 CACATCCCGCCTCTCTGGCCGGCGTAGT----GCCCGCCCGCCCGCTCACTTCGTCGGATGGCTT
648 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * ** * *
1360801 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACGATCGA
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCGG
* * * ** * *
1360866 AAGCACACAGAGGGGGACCTGGTCGATCCCCGGCTTGTGCATCCCGCCCTTCTGGCCGGCTGAGC
778 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
1360931 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGTATACGAAGTTCATTCCCAGTCTAA
843 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
1360988 GCATACGGAGTTCGTTCCCAGTCTAAGATC-GAATTGGACCGAGGGTTGCAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * ** * *
1361052 GCTTGGGCATGTGCTGGTGCCATATTTTTCTTTATCGGGGCACCATCGTTGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * *
1361117 AACCTAACCGGCGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGTGGGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
1361182 CGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1361247 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* **
1361312 GGGGACACTTTTTTCAAATGCTCACAAAAAATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
1361377 TGAATGCCAATAAAAATACAAGGATCCCATCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
1361442 ATTTGAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
1361507 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
1361572 TTGGC-TCACAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGG-TTGC
585 TTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
1361635 GCATCCTGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTACCCACCCGCTTGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG----CCCGCCCGCTCGTTTCGTCGGTTGG
* * * ** *
1361700 CTCAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGATTAGA-TCGAGGGTTGCAGCAGCAGAA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCAGCAGCAGGA
* * * * * * *
1361764 TCGGTAGCACGTAGAGGGGGACCAGACCGATCCCTGACTTACGCATCCCGCCCCTTTGGCCGGCT
774 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
1361829 GAGCGCCCGCACGCTCGTTTCCTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1361890 GCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CTGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
1361954 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCG-CAGAAGCATCGCCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAG
* *
1362018 AACCTGACCGACGGCATTGGGGTTCAGGCGATCGGGGGGGCCGGAGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGT
* *
1362083 GCGATGGATGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
1362148 CACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
1362213 T-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
1362277 GTGCATGCCAACAAAAATACAATGATCACGTCTACGAAGTTTGGGGCCAAAAATCCTTCCAAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* **
1362342 AATTTTAAAAAATCCCGGACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
1362407 TGCCGTGAAACTTCTCGCGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
1362472 TTTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
1362537 ACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTCACCCGCCCGCTCGTTTCGTCGGTTGGCTTA
649 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* ** ** *** * ** *
1362602 GGCATACGGAGTTCATTCCCAGTGTAAGATTGGACTGGA-TAGAGGGTTATGGTAGCAATATTGG
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCAGCAGCAGGATCGG
* * * * *
1362666 CAGCATGCAGAGGGGGTCCCGACCGATCCCCGGCTTGCGTATCCCGCCCCTTTGGCCAGCTGAGC
778 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
1362731 ACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCCAGTCTAA
843 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
1362788 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGA-CGAGGGTTGCCACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
1362852 CTCGGGCATGTGCTTGTGCCACATTTTTCTTCGTCGGGGCACCACCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
1362917 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGTGTGCGCACACGATGTAC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
1362981 GATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
1363046 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTCTGTAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
1363111 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * **
1363176 GCATGCCAACAAAAATACAAGGATCACGTCTACGAAGTTTGGAGCCAAAATTCTTTCCGAAAAGC
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * * *
1363241 TTTTAAAAAACCCCAAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCCTG
456 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
1363306 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
1363371 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
1363436 ATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCC-CTCATTTCGTCGGTTGGCTTAGG
651 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
1363500 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACT-ATGGGTTACGGCAGCAGGATCGGTA
716 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA-GGGTTGCAGCAGCAGGATCGGCA
* ** * * * *
1363564 GCACGCAGAAGGGGACCCGACCGATCCCCCACTTGCGCATCCTGCCCCTCTGGCCGGTTAAGTGC
780 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
1363629 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
845 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * **
1363684 GCATACGGAGTTCATTCCTAGTCTAATATCAGATTGGACCAGACAGAGGGTTGCGATAGCACATG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC--A---GACCGGACCGAGGGTTGCGGCAGCACATG
* * * * *
1363749 CTGGGCTCTGGCATGTGCTGGTGCCGCATTTCTCTTCGTC-AGG-------G-C--AGCATCGCC
61 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* *
1363803 GGAGAACCT-AGCCGATGGCATTGGGGTTCCGGTGATCGAGGGGTCCGGGGGGTCCGGGGGGTGT
126 GGAGAACCTGA-CCGACGGCATTGGGGTTCC---GA-CGA----T-CGGGGGGGCCGGGGGGTGT
* * * *
1363867 GCACACATGATGTGCAATGGGTACCGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAA
181 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * ** * * *
1363931 CCTAGAGAACTCACATCGTCTTAAAAACCATTTGAGATTTTACAGCTTTGCTGCCAGTAGCCATT
246 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
1363996 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTTGAGTTTTTA
311 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
1364061 GCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAA
376 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * *
1364126 CTCGTTGCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTC-AAAATCATGAAAAATAGA
441 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
**
1364190 AAATAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
506 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
** * * *
1364255 AAATAAAAATGCCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
571 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * *
1364320 ATCCACGGCTTGCGCATCTCGTCTCTCTGGTCGGCGTAATGCCTGCCCGCCTGTCCGCCCGCTCG
636 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT-A-G--TGCCCGCCCGCCCGCCCGCTCG
* * * * *
1364385 TTTCGTCGGTTGGCTTAGGCATACGGAGTCCATTCCCACTCTAAGATCAAACCAGACAGAAGGTT
697 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
* * * * * *
1364450 GCAGCAGCAGGATCGACAGCACGTAGAGGGGCA-CCGATCAATCCCCGGCTTGCGCATCCCTCCC
762 GCAGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * * *
1364514 CTATGGCTGACTGAGCGCCCGCACGCTCGTTTCATGGGTTAACTTAGGCATACGGAGTTCATTCC
827 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
1364579 CAGTCTAA
892 CAGTCTAA
* * * * * * *
1364587 GCATGCGGAGTCCATTCCCAGTCTAAAATCGGATCAGACCGAGGGTTGCTGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1364652 CTCGGGCACT-TGCTGGTGCTACATTTTTCTTCGTCGGAGCACCATCGTCGGAGCATCGTTGGAG
66 CTCGGGCA-TGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * *
1364716 AACCTGACCGGCGACATTGGGGTTCCAACGATCGAGTGGGCTGG-GGGGTGGGTGTGCGCACATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCG-G-GGG--GGCCGGG-GGGTGTGCGCACATG
*
1364780 ATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
190 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
1364845 CTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
255 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
1364910 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
320 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
1364975 TTTTGTGCATTCCAAAAAAAATACAAGGATCATGTCTACAAAGTTTGGGGCCAAAAATCCTTCCG
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
1365040 AAAAAATTTTAAAAAATCCCGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAATGAGTC
450 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
1365105 GTCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCCT-AAAA
515 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
**
1365169 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
580 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
1365234 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCTCGCCCGCTCGTTTCGTCGG
645 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * * *
1365299 TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCAAACTAAGGGTTGCGGTAGTA
706 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCA
* * * ** * * * * *
1365364 GGATCAGCAGCACGTAGAGGGGGTCCCGGTCAATCCCCAGCTTACGCATCCCGCCCCTCTAGTCG
771 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * * * * * *
1365429 GCTCAGTGCCCGCATGCTTGTTTCATTGGTTGACTTAGGCAAACAGAGTTCATTTCCAGTCTAA
836 GCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
1365493 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTATGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
1365558 CTCGAGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACGATCGCCTGAGCATC-ACTGAAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAG
* *** * * * *
1365622 AACCTGATCGGTAGTATTGGAGTACCGACGAT-GGGAAGGGCCAGGGGGGTGTGCGCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGGGCC-GGGGGGTGTGCGCACATGATG
* * *
1365686 TGCAATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
1365751 ACACCCCCTTAAAGAGCATTTGAGATTTTACA-GTTTGCTGCCTGTAGCCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1365815 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGC-GATATTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTT
* * * **
1365879 TTATGCATGCCAA-AAAAACACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** * * *
1365943 AAAATTTTAAAAAATCCTGAAAGGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTTGT
452 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
1366008 CTTGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAGGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
1366073 GCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGAT-CACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
1366137 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCTGCCCGCCCGCTCGTTTCGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTT
* *** * * *
1366202 GGCTTATGCATACGGAGTTCATTCCCAGTCTAAGATCAGAATGGATTGAGGGTTGCGGTAGCAGG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGG
* * * * * * **
1366267 ATCAGCAGCACACAGAGGGGGACCTGGCTGATCCCCGGCTTGCGCATCTCATCCCTCTGGCCGGC
773 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
1366332 TGAGCGCTCGCACACTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
838 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * ** *
1366394 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAAACCGAGGGTTGTGTTAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* *
1366458 GCTCGGGCATGTGCTGGTGCCAGATTTTTCTTCGCCGGGGCACCA---T-----CA-C--CGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * *
1366512 AACCTGACCGACAGCATTGGGATTCCGGCGATTGGGGGGGCCCGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* ** * * *
1366577 CGGTGGGTGCTGGTACCAGGCTCTTATATTGGCCCCCTATCCTTCATC-CACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1366641 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-CTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
1366705 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTT
* * * *
1366770 -TGCATGCCAAAAAAAATACAAGGATCATGTCTACTAAGTTTGGGGCCAAAACTCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
1366834 AATTTTAAAAAATCCCGAACCGCAAAGAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCT
454 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
1366899 TGCCATGAAACTTTACGGGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGG
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
1366964 ATTGGCACGCAGAAATATAAAGATGTGCCTAAACCCAC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
1367002 TATCATAATG
Statistics
Matches: 10847, Mismatches: 1221, Indels: 469
0.87 0.10 0.04
Matches are distributed among these distances:
862 1 0.00
863 154 0.01
864 2 0.00
865 3 0.00
866 197 0.02
867 269 0.02
868 40 0.00
869 2 0.00
870 1 0.00
873 1 0.00
874 2 0.00
876 3 0.00
878 2 0.00
879 78 0.01
880 1 0.00
881 1 0.00
884 4 0.00
886 1 0.00
887 1 0.00
888 113 0.01
889 381 0.04
890 34 0.00
891 39 0.00
892 4 0.00
893 45 0.00
894 386 0.04
895 366 0.03
896 1145 0.11
897 350 0.03
898 404 0.04
899 784 0.07
900 950 0.09
901 965 0.09
902 618 0.06
903 253 0.02
904 676 0.06
905 791 0.07
906 359 0.03
907 1 0.00
909 44 0.00
910 61 0.01
911 468 0.04
912 13 0.00
913 136 0.01
914 7 0.00
915 7 0.00
916 15 0.00
917 28 0.00
918 19 0.00
919 4 0.00
920 205 0.02
921 110 0.01
922 13 0.00
923 54 0.00
924 15 0.00
925 10 0.00
926 39 0.00
927 60 0.01
928 28 0.00
929 53 0.00
930 7 0.00
932 1 0.00
933 22 0.00
934 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCAGCAGCAGGATCGGCAG
CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1361000 original size:26 final size:26
Alignment explanation
Indices: 1360964--1361014 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1360954 TGACTTAGGT
1360964 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
* *
1360990 ATACGGAGTTCGTTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
1361015 ATCGAATTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:1361900 original size:26 final size:26
Alignment explanation
Indices: 1361864--1361916 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1361854 GTTGACTTAG
*
1361864 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1361890 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1361916 G
1 G
1361917 ATCAGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1362799 original size:26 final size:26
Alignment explanation
Indices: 1362762--1362814 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1362752 GTTGACTTAG
*
1362762 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1362788 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1362814 G
1 G
1362815 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1363688 original size:26 final size:26
Alignment explanation
Indices: 1363658--1363709 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1363648 GTTGACTTAG
1363658 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
1363684 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1363710 TATCAGATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1364595 original size:26 final size:26
Alignment explanation
Indices: 1364561--1364612 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1364551 GTTAACTTAG
*
1364561 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
*
1364587 GCATGCGGAGTCCATTCCCAGTCTAA
1 GCATACGGAGTCCATTCCCAGTCTAA
1364613 AATCGGATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTCCATTCCCAGTCTAA
Found at i:1366404 original size:26 final size:26
Alignment explanation
Indices: 1366368--1366420 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1366358 GTTGACTTAG
1366368 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1366394 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1366420 G
1 G
1366421 ATCGAACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1367676 original size:60 final size:58
Alignment explanation
Indices: 1367479--1367699 Score: 374
Period size: 57 Copynumber: 3.8 Consensus size: 58
1367469 TCTTGTGTAG
*
1367479 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT-GAAATTTATTTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTTAA
*
1367536 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTTAA
*
1367593 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAA-TTT-ATTTTTAA
1367653 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGGAA
1367700 CTTTTGAATT
Statistics
Matches: 155, Mismatches: 4, Indels: 6
0.94 0.02 0.04
Matches are distributed among these distances:
56 6 0.04
57 82 0.53
58 11 0.07
59 3 0.02
60 42 0.27
61 11 0.07
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.44
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTTTAA
Found at i:1367741 original size:16 final size:14
Alignment explanation
Indices: 1367715--1367766 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 14
1367705 GAATTTTATT
1367715 TAAAGAAAATAGAATAA
1 TAAA-AAAATA-AA-AA
*
1367732 TAAAAAAATAAAAG
1 TAAAAAAATAAAAA
1367746 TGAAAAAAATAAAAA
1 T-AAAAAAATAAAAA
1367761 TAAAAA
1 TAAAAA
1367767 TAAAGAAATG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 7 0.22
15 15 0.47
16 6 0.19
17 4 0.12
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (14 bp):
TAAAAAAATAAAAA
Found at i:1367780 original size:22 final size:23
Alignment explanation
Indices: 1367755--1367810 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 23
1367745 GTGAAAAAAA
* *
1367755 TAAAAATAAAAATAAAGA-AATG
1 TAAAAATAAAAATAAAAATAAGG
*
1367777 T-AAAACAAAAATAAAAATAAGG
1 TAAAAATAAAAATAAAAATAAGG
*
1367799 TAAAGATAAAAA
1 TAAAAATAAAAA
1367811 ATATTAAATA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
21 14 0.52
22 5 0.19
23 8 0.30
ACGTcount: A:0.73, C:0.02, G:0.09, T:0.16
Consensus pattern (23 bp):
TAAAAATAAAAATAAAAATAAGG
Found at i:1367839 original size:4 final size:4
Alignment explanation
Indices: 1367832--1367881 Score: 50
Period size: 4 Copynumber: 12.5 Consensus size: 4
1367822 AACCTAATCT
* *
1367832 AATA AATA TAA-A AACA AATAA AATA AA-A AATA AATA AACA AATA AATA
1 AATA AATA -AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AATA
1367880 AA
1 AA
1367882 AAAAAAAACC
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
3 5 0.13
4 28 0.72
5 6 0.15
ACGTcount: A:0.78, C:0.04, G:0.00, T:0.18
Consensus pattern (4 bp):
AATA
Found at i:1367867 original size:28 final size:28
Alignment explanation
Indices: 1367832--1367889 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
1367822 AACCTAATCT
*
1367832 AATAAATATAA-AAACAAATAAAATAAAA
1 AATAAATA-AACAAACAAATAAAAAAAAA
*
1367860 AATAAATAAACAAATAAATAAAAAAAAA
1 AATAAATAAACAAACAAATAAAAAAAAA
1367888 AA
1 AA
1367890 CCTGGAGCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 2 0.07
28 25 0.93
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (28 bp):
AATAAATAAACAAACAAATAAAAAAAAA
Found at i:1367885 original size:24 final size:24
Alignment explanation
Indices: 1367835--1367884 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
1367825 CTAATCTAAT
1367835 AAATATAAAAACAAATAAAATAAA
1 AAATATAAAAACAAATAAAATAAA
1367859 AAATA-AATAAACAAAT-AAATAAA
1 AAATATAA-AAACAAATAAAATAAA
1367882 AAA
1 AAA
1367885 AAAAACCTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 12 0.48
24 13 0.52
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (24 bp):
AAATATAAAAACAAATAAAATAAA
Found at i:1368765 original size:21 final size:22
Alignment explanation
Indices: 1368729--1368770 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
1368719 AATTAGAGAA
*
1368729 GATAATAAAAAAAATATTATAG
1 GATAATAAAAAAAATAATATAG
*
1368751 GATAA-AAAAATAATAATATA
1 GATAATAAAAAAAATAATATA
1368771 TAATTAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (22 bp):
GATAATAAAAAAAATAATATAG
Found at i:1368788 original size:29 final size:29
Alignment explanation
Indices: 1368755--1368850 Score: 71
Period size: 26 Copynumber: 3.4 Consensus size: 29
1368745 TTATAGGATA
1368755 AAAAAATAATAATATATAATTAAATAAAT
1 AAAAAATAATAATATATAATTAAATAAAT
* *
1368784 -AAAAATACA-AA-ATA-AATAAAACAAA-
1 AAAAAATA-ATAATATATAATTAAATAAAT
* *
1368809 AAATAATAAATATATATATTATT-AAT-AAT
1 AAAAAAT-AATA-ATATATAATTAAATAAAT
1368838 AAATAAATAATAA
1 AAA-AAATAATAA
1368851 ATACATAGGA
Statistics
Matches: 51, Mismatches: 7, Indels: 19
0.66 0.09 0.25
Matches are distributed among these distances:
26 15 0.29
27 5 0.10
28 13 0.25
29 13 0.25
30 5 0.10
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (29 bp):
AAAAAATAATAATATATAATTAAATAAAT
Found at i:1368896 original size:12 final size:12
Alignment explanation
Indices: 1368866--1368894 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
1368856 TAGGATATAC
1368866 ATAAAATATAAA
1 ATAAAATATAAA
1368878 ATAAAATA-AAA
1 ATAAAATATAAA
1368889 ATAAAA
1 ATAAAA
1368895 ATGACAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
ATAAAATATAAA
Found at i:1369167 original size:9 final size:9
Alignment explanation
Indices: 1369161--1369194 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
1369151 CATTTTTTCA
1369161 TTTTTTTGC
1 TTTTTTTGC
**
1369170 TTTTTTTTT
1 TTTTTTTGC
1369179 TTTTTTTGC
1 TTTTTTTGC
1369188 TTTTTTT
1 TTTTTTT
1369195 TTAAATTGAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.88
Consensus pattern (9 bp):
TTTTTTTGC
Found at i:1369174 original size:10 final size:10
Alignment explanation
Indices: 1369161--1369195 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
1369151 CATTTTTTCA
1369161 TTTTTTTGCT
1 TTTTTTTGCT
1369171 TTTTTTT--T
1 TTTTTTTGCT
1369179 TTTTTTTGCT
1 TTTTTTTGCT
1369189 TTTTTTT
1 TTTTTTT
1369196 TAAATTGATC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 8 0.35
10 15 0.65
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.89
Consensus pattern (10 bp):
TTTTTTTGCT
Found at i:1369176 original size:18 final size:18
Alignment explanation
Indices: 1369153--1369194 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
1369143 AGAGGTAACA
1369153 TTTTTTCATTTTTTTGCT
1 TTTTTTCATTTTTTTGCT
**
1369171 TTTTTTTTTTTTTTTGCT
1 TTTTTTCATTTTTTTGCT
1369189 TTTTTT
1 TTTTTT
1369195 TTAAATTGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.02, C:0.07, G:0.05, T:0.86
Consensus pattern (18 bp):
TTTTTTCATTTTTTTGCT
Found at i:1369195 original size:18 final size:18
Alignment explanation
Indices: 1369161--1369196 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
1369151 CATTTTTTCA
1369161 TTTTTTTGCTTTTTTTTT
1 TTTTTTTGCTTTTTTTTT
1369179 TTTTTTTGCTTTTTTTTT
1 TTTTTTTGCTTTTTTTTT
1369197 AAATTGATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.89
Consensus pattern (18 bp):
TTTTTTTGCTTTTTTTTT
Found at i:1369209 original size:123 final size:120
Alignment explanation
Indices: 1369082--1369349 Score: 342
Period size: 123 Copynumber: 2.3 Consensus size: 120
1369072 TTGTTTTTAC
* *
1369082 CAAAGCTCCTTTAAACAGAGGCTCAACGACCTTGAGAAACATAAATAAAGCTCCTCTAAATAGAG
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACCTTGAGAAACATAAACAAAGCTCCTCTAAATAGAG
1369147 GTAACATTTTTTCATTTTTTTGCTTTTTTTTTTTTTTTTGCTTTTTTTTTAAATTGAT
66 GTAACATTTTTTCATTTTTTT--TTTTTTTTTTTTTTTT-CTTTTTTTTTAAATTGAT
* * * * *
1369205 CAAAGCTCCTCTAAGCAGAGGTTCAATGACTTTGAGAAACATAAACAAAGCTCTTCTAAATAGAG
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACCTTGAGAAACATAAACAAAGCTCCTCTAAATAGAG
*
1369270 GT-A-ATTTTTT--TTTGTTTTTTTTTTTTTTTTTTTT-TTTTTTTTT---TT-TT
66 GTAACATTTTTTCATTT-TTTTTTTTTTTTTTTTTTTTCTTTTTTTTTAAATTGAT
*
1369317 CAAAGCTCCTCT-AA-AGAGGCTCAACGACTTTGA
1 CAAAGCTCCTCTAAACAGAGGCTCAACGACCTTGA
1369350 AAAGTAAATG
Statistics
Matches: 133, Mismatches: 11, Indels: 15
0.84 0.07 0.09
Matches are distributed among these distances:
110 17 0.13
111 1 0.01
112 13 0.10
113 2 0.02
116 9 0.07
118 16 0.12
119 3 0.02
120 4 0.03
121 7 0.05
122 1 0.01
123 60 0.45
ACGTcount: A:0.28, C:0.15, G:0.12, T:0.45
Consensus pattern (120 bp):
CAAAGCTCCTCTAAACAGAGGCTCAACGACCTTGAGAAACATAAACAAAGCTCCTCTAAATAGAG
GTAACATTTTTTCATTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTAAATTGAT
Found at i:1369280 original size:1 final size:1
Alignment explanation
Indices: 1369274--1369316 Score: 77
Period size: 1 Copynumber: 43.0 Consensus size: 1
1369264 ATAGAGGTAA
*
1369274 TTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1369317 CAAAGCTCCT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.00, C:0.00, G:0.02, T:0.98
Consensus pattern (1 bp):
T
Found at i:1369389 original size:35 final size:36
Alignment explanation
Indices: 1369343--1369413 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
1369333 AGGCTCAACG
1369343 ACTTTGAAAAGTAAA-TGCTCCTCTAAACAGAGGCA
1 ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA
*
1369378 ACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCA
1 ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA
1369414 CCAAATTGCT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 14 0.41
36 20 0.59
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (36 bp):
ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCA
Found at i:1369426 original size:26 final size:26
Alignment explanation
Indices: 1369390--1369470 Score: 108
Period size: 26 Copynumber: 3.0 Consensus size: 26
1369380 TTTGGAAAGT
1369390 AAATTGCTCCTCTAAACAGAGGCACC
1 AAATTGCTCCTCTAAACAGAGGCACC
1369416 AAATTGCTCCTCTAAACAGAGGCACC
1 AAATTGCTCCTCTAAACAGAGGCACC
* * * *
1369442 ACGACTTTCCCCTCTAAATAGAGGCACC
1 A--AATTGCTCCTCTAAACAGAGGCACC
1369470 A
1 A
1369471 TGACTTTGGA
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
26 27 0.55
28 22 0.45
ACGTcount: A:0.33, C:0.32, G:0.15, T:0.20
Consensus pattern (26 bp):
AAATTGCTCCTCTAAACAGAGGCACC
Found at i:1369464 original size:28 final size:27
Alignment explanation
Indices: 1369398--1369477 Score: 99
Period size: 28 Copynumber: 2.9 Consensus size: 27
1369388 GTAAATTGCT
* * *
1369398 CCTCTAAACAGAGGCACCA-AATTGCT
1 CCTCTAAACAGAGGCACCAGACTTTCC
1369424 CCTCTAAACAGAGGCACCACGACTTTCC
1 CCTCTAAACAGAGGCACCA-GACTTTCC
*
1369452 CCTCTAAATAGAGGCACCATGACTTT
1 CCTCTAAACAGAGGCACCA-GACTTT
1369478 GGAAAGTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 19 0.40
28 28 0.60
ACGTcount: A:0.31, C:0.33, G:0.15, T:0.21
Consensus pattern (27 bp):
CCTCTAAACAGAGGCACCAGACTTTCC
Found at i:1369498 original size:69 final size:69
Alignment explanation
Indices: 1369416--1369587 Score: 326
Period size: 69 Copynumber: 2.5 Consensus size: 69
1369406 CAGAGGCACC
*
1369416 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTCCCCTCTAAATAGAGGCACCATGACTTTGGA
1 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTCCCCTCTAAATAGAGGCACCACGACTTTGGA
1369481 AAGT
66 AAGT
1369485 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTCCCCTCTAAATAGAGGCACCACGACTTTGGA
1 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTCCCCTCTAAATAGAGGCACCACGACTTTGGA
1369550 AAGT
66 AAGT
*
1369554 AAATTGCTCCTCTAAACAGAGGCACCATGACTTT
1 AAATTGCTCCTCTAAACAGAGGCACCACGACTTT
1369588 TGGAAAGTAA
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
69 101 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (69 bp):
AAATTGCTCCTCTAAACAGAGGCACCACGACTTTCCCCTCTAAATAGAGGCACCACGACTTTGGA
AAGT
Found at i:1369533 original size:28 final size:28
Alignment explanation
Indices: 1369493--1369546 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
1369483 GTAAATTGCT
1369493 CCTCTAAACAGAGGCACCACGACTTTCC
1 CCTCTAAACAGAGGCACCACGACTTTCC
*
1369521 CCTCTAAATAGAGGCACCACGACTTT
1 CCTCTAAACAGAGGCACCACGACTTT
1369547 GGAAAGTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.35, G:0.15, T:0.20
Consensus pattern (28 bp):
CCTCTAAACAGAGGCACCACGACTTTCC
Found at i:1369566 original size:41 final size:42
Alignment explanation
Indices: 1369521--1369606 Score: 147
Period size: 41 Copynumber: 2.1 Consensus size: 42
1369511 ACGACTTTCC
*
1369521 CCTCTAAATAGAGGCACCACGAC-TTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
*
1369562 CCTCTAAACAGAGGCACCATGACTTTTGGAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
1369604 CCT
1 CCT
1369607 AACAATCATG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
41 21 0.50
42 21 0.50
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.26
Consensus pattern (42 bp):
CCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATTGCT
Found at i:1369910 original size:43 final size:42
Alignment explanation
Indices: 1369804--1369940 Score: 136
Period size: 43 Copynumber: 3.2 Consensus size: 42
1369794 TGAAAGATCC
** * *
1369804 TCATTTGAATTTTGGAGGCTCACATCCAAAAGTT-AAAGGTTCT
1 TCATTTGAATTTTGGA-ATTCACATCCAAAAATTCAAAGCTT-T
** *
1369847 T-ATTTGGCAAACTTGGAATTCATATCCAAAAA-TCTAAAGCTTT
1 TCATTT-G-AATTTTGGAATTCACATCCAAAAATTC-AAAGCTTT
1369890 TCATTTGAATTTTGGAAATTCACATCCAAAAATTCAAAGCTTT
1 TCATTTGAATTTTGG-AATTCACATCCAAAAATTCAAAGCTTT
1369933 TCATTTGA
1 TCATTTGA
1369941 GTTCAAAGGC
Statistics
Matches: 77, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
42 11 0.14
43 47 0.61
44 19 0.25
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (42 bp):
TCATTTGAATTTTGGAATTCACATCCAAAAATTCAAAGCTTT
Found at i:1370100 original size:18 final size:18
Alignment explanation
Indices: 1370066--1370100 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1370056 ACATCCAAAA
**
1370066 GTTCAAAAATTTTCATTT
1 GTTCAAAAATTCACATTT
1370084 GTTCAAAAATTCACATT
1 GTTCAAAAATTCACATT
1370101 CGATGAACTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.14, G:0.06, T:0.43
Consensus pattern (18 bp):
GTTCAAAAATTCACATTT
Found at i:1370172 original size:22 final size:22
Alignment explanation
Indices: 1370124--1370182 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
1370114 GGTTTCACTC
1370124 CTCAAAGATTCTCATTTTGAAAT
1 CTCAAAGATTCTCA-TTTGAAAT
**
1370147 -TCAAAGATTCTCATTTGAGTT
1 CTCAAAGATTCTCATTTGAAAT
*
1370168 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
1370183 CAAAACATTC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.19
22 26 0.81
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAAAT
Found at i:1371284 original size:10 final size:10
Alignment explanation
Indices: 1371271--1371308 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
1371261 CATTTTCTCA
1371271 TTTTTTTCTT
1 TTTTTTTCTT
* *
1371281 TTTTTCTCAT
1 TTTTTTTCTT
1371291 TTTTTTTCTT
1 TTTTTTTCTT
1371301 TTTTTTTC
1 TTTTTTTC
1371309 ATCATCTTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTTTCTT
Found at i:1371298 original size:20 final size:20
Alignment explanation
Indices: 1371263--1371337 Score: 82
Period size: 20 Copynumber: 3.6 Consensus size: 20
1371253 CTTTTTTTCA
1371263 TTTTCTCA-TTTTTTTCTTT
1 TTTTCTCATTTTTTTTCTTT
1371282 TTTTCTCATTTTTTTTCTTTTT
1 TTTTCTCATTTTTTTTC--TTT
* *
1371304 TTTTCATCATCTTCTCTT-TTT
1 TTTTC-TCAT-TTTTTTTCTTT
1371325 TTTTCTCATTTTT
1 TTTTCTCATTTTT
1371338 CATCCATTGT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
19 11 0.23
20 12 0.25
21 8 0.17
22 8 0.17
23 4 0.08
24 5 0.10
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTCTCATTTTTTTTCTTT
Found at i:1371302 original size:19 final size:18
Alignment explanation
Indices: 1371250--1371304 Score: 69
Period size: 19 Copynumber: 3.1 Consensus size: 18
1371240 TTAATTTGAA
*
1371250 TCTC-TTTTTTTC-ATTT
1 TCTCATTTTTTTCTTTTT
1371266 TCTCATTTTTTTCTTTTTT
1 TCTCATTTTTTTC-TTTTT
1371285 TCTCATTTTTTTTCTTTTT
1 TCTCA-TTTTTTTCTTTTT
1371304 T
1 T
1371305 TTTCATCATC
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
16 4 0.12
17 8 0.24
19 14 0.41
20 8 0.24
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.78
Consensus pattern (18 bp):
TCTCATTTTTTTCTTTTT
Found at i:1371337 original size:30 final size:31
Alignment explanation
Indices: 1371284--1371341 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
1371274 TTTTCTTTTT
**
1371284 TTCTCATTTTTTTTCTTTTTTTTTCATCATC
1 TTCTCATTTTTTTTCTTCATTTTTCATCATC
*
1371315 TTCTCTTTTTTTTTC-TCATTTTTCATC
1 TTCTCATTTTTTTTCTTCATTTTTCATC
1371342 CATTGTTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 10 0.42
31 14 0.58
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.71
Consensus pattern (31 bp):
TTCTCATTTTTTTTCTTCATTTTTCATCATC
Found at i:1374813 original size:26 final size:26
Alignment explanation
Indices: 1374784--1374834 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1374774 GATCTGATCT
*
1374784 TAGACTGGGAATGAACTCTGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
*
1374810 TAGACTGGGACTGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
1374835 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:1375708 original size:26 final size:26
Alignment explanation
Indices: 1375679--1375731 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1375669 CCGATCCGAT
1375679 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
1375705 CTTAGACTGGGAATGAGCTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1375731 C
1 C
1375732 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1378344 original size:26 final size:26
Alignment explanation
Indices: 1378315--1378367 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1378305 TTGGTCCAAT
1378315 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1378341 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
1378367 C
1 C
1378368 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1381863 original size:26 final size:26
Alignment explanation
Indices: 1381827--1381879 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1381817 CTGGTTCGAT
*
1381827 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1381853 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1381879 C
1 C
1381880 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1382724 original size:895 final size:891
Alignment explanation
Indices: 1380561--1383082 Score: 3073
Period size: 902 Copynumber: 2.8 Consensus size: 891
1380551 TTGGCTCCAA
* *
1380561 ACAAAGAAAAATCAGCTGAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
1 ACAAA-AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
1380626 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCGGTAAAATCTCAAATGCTCTTTAAGGGG
65 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
1380691 GTGTGAGCTCTCAAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
130 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
1380756 CGCACATCATGTGCGCACACCCCCCGACTCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAAG
195 CGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * * *
1380821 TTCTCCGACGATGCT-CTAGCGATGGTGCCCCAACGAAGAAAAAT-ACAGCACTAGCACATGCCT
260 TTCTCCGACGATGCTCCGA-CGATGGTG-CCCGACGAAGAAAAATGAGA-CACCAGCACATGCCT
* * * * * * * *
1380884 GAGCCTAGGATTTGCTGC-CACAACCCTATGTCCAATCCGATCTTAGACTGGAAATTAACTCCAT
322 AAGCCCAGCATGTGCTGCGCA-ACCCCGA--TCCGATCCGATCTTAGA-TGG-AA-TAACTCCGT
* * * * * *
1380948 ATGCTTAGACTGGTAATGAACTTCGTATGTCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCCC
381 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * * *
1381013 AGCCTGCCAGAGGGGAGGGATGAACAAGCCAGGGATCGGCCAGGTCCTCCTCTACGTGCTACCGA
446 AGCCAGCCAGAGGGGCGGGATGAGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGA
* * * * * *
1381078 TCCTACTACCGCAACCCTTAGTCAGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTTAGC
511 TCCTGCTGCCGCAACCCTCAGGCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
1381143 CAACAGATGAAATGAGCTG-GCGGGCTAGCGTGCGACCACTACGCTGGCCAGAGAGACGGGATGC
576 CAACAGACGAAACGAGCGGAGCGGGC-GGCG-GC-ACTAC-AC-C-GGCCAGAGAGACGGGATGC
* *
1381207 ACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGCATGCCAAT
635 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * * * *
1381272 GCCATTTTTATGACTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCA
700 GCCATTTTTATGGCTTGTAAATTCATACAATGATCCCCTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
1381337 AGACGACTCGTTTTTTATTTTTCACGTTTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATT
765 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
**
1381402 TTTTCGGAAGGATTTTTTCCCCAAGCTTAGTAGATGTGATCCTTGTATTTTTGTTGGCATGC
830 TTTTCGGAAGGATTTTGGCCCCAAGCTTAGTAGATGTGATCCTTGTATTTTTGTTGGCATGC
1381464 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
1 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
1381529 CATTAT-AGATACTTTAATGGCCACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGG
66 CATT-TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * *
1381593 GTGTGAGTTCTCGAGGTTTGACGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCCAT
130 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
1381658 CGAACATCATGTGCGCACACCCCCCTG-GCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTTAG
195 CGCACATCATGTGCGCACACCCCCC-GACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
* * * ** * * *
1381722 GTTCTCCGATGATGCTCCGGCGATGGTGCCTTGGGGAAGAAAAATGCGGCACCAGCACATGCTCG
259 GTTCTCCGACGATGCTCCGACGATGGTGCC-CGACGAAGAAAAATGAGACACCAGCACATGC-CT
* * * * *
1381787 AA-CACAGCATGTGCTGCTGCAACCCTCGGTCTGGTTCGATCTTAGATTGGGAATGAACTCCGTA
322 AAGCCCAGCATGTGCTGC-GCAACCC-CGATCCGATCCGATCTTAGA-T-GGAAT-AACTCCGTA
1381851 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
382 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
1381916 GTCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGTGCGCTGCCGAT
447 GCCAGCCAGAGGGGCGGGATGAGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGAT
* *
1381981 CCTGCTGCCGCATCCCTCAGGCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
512 CCTGCTGCCGCAACCCTCAGGCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
1382046 AGCTGACGAAACGAGC-GAGCGGGC-GC-GCACTACACCGGCCAGGGAGACGGGATGCGCAAGCC
577 AACAGACGAAACGAGCGGAGCGGGCGGCGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCC
* *
1382108 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATTCCAATGCCATTT
642 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
1382173 TTATGGCTTGTAAATTCGTACAATGATCCCCTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGAC
707 TTATGGCTTGTAAATTCATACAATGATCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
1382238 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG
772 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* *
1382303 AAGGAGTTTTGGCCCC-AGACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGC
837 AAGGA-TTTTGGCCCCAAG-CTTAGTAGATGTGATCCTTGTATTTTTGTTGGCATGC
* * **
1382359 ACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGATTATTTGAAAAAAGTGTCCC
1 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * *
1382424 TATTTCAGACACTTTAATGGCTACTGACAGCAAACTTGTAAAATCTAAAATGCTCTTTAAGGGGG
66 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
1382489 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCGAGTACCAGCAGCAATC
131 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
1382554 GCACATCATGTGCGCACACACCCCCGACCCCCCCGATCATCGGAACCCCAATGTCGCTGGTCAGG
196 GCACATCATGTGCGCACAC-CCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * * * * *
1382619 TTCTCCGGCAATGCTCCGACAATGGTGTCCCGACGAAGAAAAGTGTGACACCAGCACTTGCCTAA
260 TTCTCCGACGATGCTCCGACGATGGTG-CCCGACGAAGAAAAATGAGACACCAGCACATGCCTAA
*
1382684 GCCCAGCATGTGCTGTCGTAACCCCGATCCGATCCGATC-----T----T-A----G-A--C-TA
324 GCCCAGCATGTGCTG-CGCAACCCCGATCCGATCCGATCTTAGATGGAATAACTCCGTATGCTTA
* * * * *
1382731 -A----GAATGAACTCCGTACGCCTAAGTCAACCCACGAAACGAGTGTGTGGACGTTCAGCCAGC
388 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGC
* * * * *
1382791 CAGAGGGGCAGGATGTGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCATGTTGTCGATCCTGCT
453 CAGAGGGGCGGGATGAGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT
* ** * * *
1382856 GTCGCAACCCTC-GGTCCA-GTCCAATCTTAGACTGGGAATGAGCTTCGTATGCCTAAGCCAACC
518 GCCGCAACCCTCAGG--CAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACA
* * *
1382919 GACGAAACGAACGGGCGGGCAGGCGAACAGGCGGGCGGGCACTACGCCGGCCAAAGAGACAGGAT
581 GACGAAACG-A---GC-GG-A-GCG----GGC-GGC-GGCACTACACCGGCCAGAGAGACGGGAT
* * *
1382984 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACACGCCA
633 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
1383049 ATGCCATTTTTATGGCTTGTAAATTCATACAATG
698 ATGCCATTTTTATGGCTTGTAAATTCATACAATG
1383083 GCCCCTTAAG
Statistics
Matches: 1401, Mismatches: 180, Indels: 94
0.84 0.11 0.06
Matches are distributed among these distances:
868 2 0.00
869 165 0.12
870 2 0.00
873 3 0.00
874 2 0.00
875 2 0.00
876 1 0.00
877 4 0.00
878 1 0.00
881 3 0.00
882 1 0.00
883 2 0.00
884 1 0.00
885 116 0.08
889 1 0.00
894 211 0.15
895 253 0.18
896 104 0.07
897 7 0.00
898 2 0.00
900 2 0.00
901 4 0.00
902 494 0.35
903 15 0.01
904 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (891 bp):
ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
TCTCCGACGATGCTCCGACGATGGTGCCCGACGAAGAAAAATGAGACACCAGCACATGCCTAAGC
CCAGCATGTGCTGCGCAACCCCGATCCGATCCGATCTTAGATGGAATAACTCCGTATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAG
AGGGGCGGGATGAGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCC
GCAACCCTCAGGCAGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGA
AACGAGCGGAGCGGGCGGCGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGATCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTT
GGCCCCAAGCTTAGTAGATGTGATCCTTGTATTTTTGTTGGCATGC
Found at i:1385582 original size:26 final size:26
Alignment explanation
Indices: 1385544--1385596 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1385534 CTGATCCGAT
**
1385544 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACCAGGAATGAACTCTATATG
*
1385570 CTTAGACCAGGAATGAACTCTGTATG
1 CTTAGACCAGGAATGAACTCTATATG
1385596 C
1 C
1385597 CTAAGTGAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCTATATG
Found at i:1387376 original size:26 final size:26
Alignment explanation
Indices: 1387347--1387399 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1387337 CCGATCTGAT
1387347 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1387373 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1387399 C
1 C
1387400 CTAAGTCCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1388133 original size:899 final size:896
Alignment explanation
Indices: 1384796--1392724 Score: 9959
Period size: 899 Copynumber: 8.9 Consensus size: 896
1384786 GCTCAGCATG
* * * * *
1384796 TGCTGCTACAACCATCGGTCTGGTCTGATTTTAGACTGGGAATGAACTACGTACGCCTAAGCCAA
1 TGCTGCCACAACC-TCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** *
1384861 CTGACGAAACGAGGGGGCGGGCGGGC-GGACGGGCACTACGTCGACCAGAGAGACGGGATGCGCA
65 CCGACGAAACGA----GCGGGCGGGCAGG-CGGGCACTACACCGGCCAGAGAGACGGGATGCGCA
* * * ** * *
1384925 ACCCGTGGATCTATAGAGTGGTACATGGGTTTAGGCACATCTTCATATTTTTGAATGCCAATGCC
125 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
1384990 ATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAACCCTTCACGTGAAGTTTCATGGCAAGA
190 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
1385055 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTCAGGATTTTTTAAAATTTTT
255 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTGA-GATTTTTTAAAATTTTT
* * * * * **
1385120 TCAGAAGGAG-TTTCGCCGCAAACTTGGTAGATGTGATCCTTGTATTTTTATTCCCATGCACAAA
319 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
1385184 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
384 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
1385249 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
449 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
1385314 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATA
514 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
1385379 TCATGTGCGCACACCTACCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTTGGTCAGGTTCT
579 TCATGTGCGCACACC--CCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
** * *** * ** *
1385444 CCGGTGATGCTCCGACGATAGTGCCCCATTGAAAAAAAATGCAGCACCAGCACATGCCTGAGCCC
641 CCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
* * * * **
1385509 AACATCTGCTGTCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCTATATGCTTA
706 AGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
** * * * * * *
1385574 GACCAGGAATGAACTCTGTATGCCTAAGTGAACCCACAAAACGAGCGTACGGGCGCTTAGTCGGC
771 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTCAGCCGGC
** * * * *
1385639 CAGAGGGATGGGATGCGCAAG-CTGGGGATCGATCGAGTCCCCCTCGT--GTGCTACCGATCT
836 CAGAGGGGCGGGATGCGCAAGTC-GGGGATCGGTCGGGTCCCCCTC-TACGTGCTGCCGATCC
** * * * *
1385699 TGCTGCCACAACCCTTGGGGC-AGTCTGATCTTAGATTGGGAATGAACTACGTATGCCTAAGCCA
1 TGCTGCCACAA-CC-TCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * ** * **
1385763 ACTGATGAAACGAGCGGGTGGGCAAGCGGGCACTACTCCGGCCAGAGAGACGTCATGCGCATGTT
64 ACCGACGAAACGAGCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
1385828 GTGGATGGATAGGCTGGTTGGTGGGTTTAGGCACATCTTCATATTGCTG-AGTGCCAATGCCATT
129 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCCATT
* *
1385892 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAAGACGA
193 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
1385957 CTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTTGTGATTTTTTAAAATTTTTTCG
258 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTGAGATTTTTTAAAATTTTTTCG
* *
1386022 GAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTATTTTTGGCATGCACAAAAAA
322 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* *
1386087 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAG
387 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
* * *
1386152 ACATTTTAATGGCTACTGGTAGCAAACCTGTAAACTCTCAAATGCTCTTTAAGGGGGTGTGAGTT
452 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
1386217 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC-AGATACCAGCACCCATCACACATC
517 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG-TACCAGCACCCATCGCACATC
* ** ** * * *** *
1386281 ATGTGCGCACAACCGTCGGCCCCACCGATCATCGTAACCCTAATGCTACCGGTCAAGTTCTCCGA
581 ATGTGCGCACACCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * * * *
1386346 TGATGCTCCGGCGATGGTGCCCCGGGGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCA
645 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
* * ** * * *
1386411 TGTGCTGCCGCAACCCTTGGTCCAGTCCAATCTTAGAATGGGAATGAACTCCGTATGCTTGGACT
710 TGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * ** *
1386476 AGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGTG-AGCGGGGGATCAGCCGGCCAG
775 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTA-CGGACGCTCAGCCGGCCAG
* * * * * * *
1386540 AGGGGCGGGATGCACAAGCCGAGGATCGGCCTGGTCCCCCTCTACGTGCTTCTGATCC
839 AGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
*
1386598 TGCTGTCACAACCCTCA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCACAA-CCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** * * *
1386662 CCGACGAAACGAACGGGCGGACGGGCGGGTGGGCTCTATGCCGACCAGAAAGACGGGATGCGTAA
65 CCGACGAAACG-A---GCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAA
* * *
1386727 GCCGTGGATCAATAGGGTGGTCGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCA
126 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
1386792 TTTTTATGGCTTGTAAATTCATACAATAGTCCCTTTAGCCTTCACGTGAAGTTTCATGGCAAGAC
191 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * * *
1386857 GACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGATGGGGATTTTTTAAATTTTTTT
256 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC-GGTTGAGATTTTTTAAA-ATTTTT
* * *
1386922 TCGAAAGGGGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAA
319 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
*
1386987 AAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATT
384 AAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
1387052 TCAGACACTTTAATGGCTACTGGCAGCAAA-CTGTAAAATCTCAAATGCTTTTTAAGGAGGG-GT
448 TCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGGTGT
* * *
1387115 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGAA
512 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* **
1387180 CATCATGTGCGCACACGCCCCCCGGCCCCCCCGATCGCCGCAACCATAATGCCGTCGGTCAGGTT
577 CATCATGTGCGCACA--CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTT
* * * * * *
1387245 CTCTGGCGATGCTCCGACGATGGTACCCCGGTGAAGAAAAATATGGCACCAACACATGCCCGAGC
639 CTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
* * * * * *
1387310 CCAGAATGTGCTACCACAACTCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCT
704 CCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * ** * *
1387375 TAGACTGGGAATGAACTTCGTATGCCTAAGTCCACCCACGAAAAAAGCATACGGACGCTCAGCCA
769 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTCAGCCG
* * * * *
1387440 GCCAGAGGGGTGGGATGCACAAGTCGGGGATCAGTCGGGTCCCCCTCTGCGTGCTGCCAAT-C
834 GCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* *
1387502 TGGCTACCACAA-CTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 T-GCTGCCACAACCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
1387566 CCGACGAAACGAGCGGACGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCG
65 CCGACGAAACGAGCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
1387631 TGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAAGCCATTTT
130 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
1387696 TATAGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
195 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
1387761 CGTTTTCTATTTTTCATGATTTTTTAAACTTTTTATGGCTTGAGATTTTTTAAACTTTTTTTGGA
260 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTGAGATTTTTTAAAATTTTTTCGGA
* *
1387826 AGGAGTTTTGGCGCCAAACTTGGTAGACGTAATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
324 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* * *
1387891 TCATCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
* **
1387956 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGCATGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
1388021 CGAGGTTTGATGAGGTATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
1388086 TGCGCACACCTCTCCCAGGCCCCCAGATCGTCGGAACCCCAATGCCGTCGGCCAGGTTCTCCGGC
584 TGCGCACACC-C-CCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* * * *
1388151 AATGCTCCGACGATGGTGCCCCAGCAAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCAT
646 GATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * *
1388216 GTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTG
711 GTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * *
1388281 GGAATGAACTCCGTATGCCTAAGTCCACCCACGAAACAAGCGTACGGACGCTCAGTCGGCCAGAG
776 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTCAGCCGGCCAGAG
* * * * * * **
1388346 GGGCGAGATGCGCAAGTTGGGGATCGGTCGAGTACCCCTCTGCATGCTATCGATCC
841 GGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* ** ** ** ** * * * *
1388402 TACTATCACAACCCTTGGTCCCGTCCAATCTTAGACTGAGAATGAACTGCGTATGCCAAAGCCAT
1 TGCTGCCACAA-CCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
1388467 CCGACGAAACGAGCGAGCGGGCGGGCAGGCGGGTACTACACCGACCAGAGAGACAGTATGCACAA
65 CCGACG-AA--A-CGAGCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAA
* *
1388532 GCCGTGGATCGATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAATGCCA
126 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
1388597 TTTTTATGGCTTGTCAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
191 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** *
1388662 GACTCGTTTTCTATTTTTCAC-ATTTTCAAAACATTTTACGGTTCG-GAATTTTTTAAAATTTTT
256 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT-GAG-ATTTTTTAAAATTTTT
* * * * * *
1388725 TCGGAAGGATTTTTGGCCCAAAACTTGGTAGATGTGATCCGTATAATTTTTTTGGCATGCAC-AA
319 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
*
1388789 AAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
384 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
1388854 CGAACACTTTATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
449 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
1388919 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACA
514 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* **
1388984 TCATGTGTGCACACCCCCCCGGCCCCTCAAATCGCCGGAACCCCAATGCCG-CTGGTCAGGTTCT
579 TCATGTGCGCACA-CCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTCT
* * * *
1389048 CCGACGATGCTCGGATGATGGTGCCCCGGCGAAGAAAAATGTGACACCAGCACATGCCCAAGCCC
641 CCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
*
1389113 AACATGTGCTGCCACAA-CC-C--TC--G---G---TT---C--GG--T---CT--G-A-GCTTA
706 AGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
1389152 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGTGTGCGGGCGCTCAGCCGAC
771 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTCAGCCGGC
* * * *
1389217 CTGAGGGGCGGGATGCGCAAGTCGTGGATCGGCCGGGTCCCCCTCTACGTGCTGCCAATCC
836 CAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* ** * *
1389278 TGCTACTGCAACCCTAAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCACAA-CCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
1389343 CCGTCGAAACGAGCGGGC--G-A-GCGGGCACTACACCGGCCAGAGAGTCAGGATGCGTAAGCCG
65 CCGACGAAACGAGCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCG
1389404 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
130 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
1389469 TATGGCTTGGAAATTCATACAATGGTCCGC-TAAGCCTTCACGTGAAGTTTCATGGCAAGACGGC
195 TATGGCTTGTAAATTCATACAATGGTCC-CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
1389533 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTAGAGATTTTTTAAAATTTTTTCGA
259 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT-GAGATTTTTTAAAATTTTTTCGG
* * * *
1389598 AAAGAG-TTTGGCCCCAAACTT-GTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATA
323 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* *
1389661 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTA-TTCTAG
388 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AA
* * * * *
1389725 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGCGAGCGTCAGTT
452 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
1389790 CTTGAGGCTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCA
517 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
1389855 TGGGCGCACACCCCCTCGACCTCCCAGATCGCTGGAACCCTAATGCCGTCGGCCAGG---T----
582 TGTGCGCACACCCCC-CGGCC-CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
1389913 ---T-CTCCGACGA---T------GC-----------T----CCAGCACATGCCCGAGCCCAGCA
645 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
** * * *
1389950 TGTGCTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTACGCATGCTTAGACT
710 TGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * * *
1390015 GGGAATGATCTCCGTATGCCTAAGTTAACCAATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGA
775 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTCAGCCGGCCAGA
* * * * * *
1390080 GGGGCGGGATGCGCAAGTCGTGGATCGATCGAGTCCCCCTCTGCGTGCTACCGATCT
840 GGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * * * *
1390137 TGCGGCCGCAACCCTCAATTTGGTATGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCACAA-CCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * **
1390202 CCGTCGAAACGA----GC--G--GGCGGG-ACTACGCTGGCCAGAGACACGGGATGCATAAGCCG
65 CCGACGAAACGAGCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCG
*
1390258 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGCATGCCAATGCCATTTT
130 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
1390323 TATGGCTTGGAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
195 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
1390388 TGTTTTCTATTTTTCACGATTATCGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGA
260 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT-GAGATTTTTTAAAATTTTTTCGGA
* * *
1390453 AGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAAT
324 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* *
1390518 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTCAAAAAAGTGTCCCCATTTCAAAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
* *
1390583 ACTTTCATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
1390648 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAACACCCATCACACATCATG
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
1390713 TGCGCACACCCACCTGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGG---T------
584 TGCGCACACCC-CCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* ** *
1390769 -T-CTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCTGGAGCCCAACATG
647 ATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
1390832 TGCTGCCACAACCCTCAGT-TCGGTCTGAGCTTAGACTGGGAATGAAATCCGTATGCTTAGACT-
712 TGCTGCCACAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * * *
1390895 GGAATGAACTCCGTATGCCTAAGTCCACCCACGAAACAAGCATACGGACGCTCAGTCAGCCAAAG
776 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTCAGCCGGCCAGAG
* * * * *
1390960 GGGCAGGATGCGCAAGTCGGGGATCGATCGGGTACCCCTCTACATGCTGTCGATCC
841 GGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * ** *
1391016 TGCTGTCTCAACCCTCAATCCCGT-TGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCACAA-CCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
1391080 CCGACGAAACGAGCGGGCGGGCGGGCAGGCGAGCACTACACCGGCCAGAGAGACCGTATGCGCAA
65 CCGACGAAACGA----GCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAA
* *
1391145 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCGGCATGCCAATGCCA
126 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
1391210 TTTTTATGCCTTGTCAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
191 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * * * *
1391275 GACTCGTTTTCTATTTTTCACAATTTTCAAAACATTTTATGGTTCAGAATTTTTAAAACTTTTTT
256 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTGAGATTTTTTAAAA-TTTTTT
* * * *
1391340 CGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTTTTGGCATGCAAAAAA
320 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* *
1391405 AAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTC
385 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
1391470 AAACACTTTATTGGCTACTGGCAGCAATCTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
450 AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
1391535 TTGTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCTATTGCACAT
515 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * **
1391600 CATGTGTGCACACCCCCTGGCCCCCCGATCGCTAGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
580 CATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * *
1391665 CGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCA
645 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
* ** *
1391730 TGTGCTGTCGTAACCCTCGGGTCTGGTCCGATCATAGACTGGGAATGAACTCCGTATGCTTAGAC
710 TGTGCTGCCACAACCCTC-GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* *
1391795 TGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTACGGACGCTCAGCCGACCAG
774 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTCAGCCGGCCAG
* * * * *
1391860 AGGGGTGGGATGCGCAAG-CTGTGGATCGGTCGGGTTCCCCTCTACATGCTGCCGATCT
839 AGGGGCGGGATGCGCAAGTC-GGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* *
1391918 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTGCCACAA-CCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
1391983 CCGTCGAAACGAGCGGGTGGGCA----GGCACTACGCTGGCCAGAGAGACAGGATGCGTAAGCCG
65 CCGACGAAACGAGCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
1392044 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTGCATGCCAACGCCATTTT
130 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * *
1392109 TATGGCTTGGAAATTCATACAATGGTCCGTTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACT
195 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
1392174 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTAGAGATTTTTTTAAATTTTTTCGAA
260 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT-GAGATTTTTTAAAATTTTTTCGGA
* * * *
1392239 AGGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAATAT
324 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* * *
1392304 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTCCAGAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
* * *
1392369 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGAGCGTGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
1392434 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACACACCATG
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * * *
1392499 TGCGTACACCCCCCTCCCCCGACCCCCCAGATCACTGGAACCCTAATGCTGCCGGCCAGGTTCTC
584 TGCG--CA---CAC-CCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* ** * ** ** *
1392564 CGATGATGCTCCGACGATGGTGCCCCAACAAAGAAAAATACGGCACCAGCACATTTCCGAGCCTA
642 CGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCA
* *
1392629 GCATGTGCTGTCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGCATGAACTCCGTATGCTTAG
707 GCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
1392694 ACTGGGAATGAACTCCGTATGCCTAAGTCAA
772 ACTGGGAATGAACTCCGTATGCCTAAGTCAA
1392725 ACAACCCTCT
Statistics
Matches: 6130, Mismatches: 746, Indels: 302
0.85 0.10 0.04
Matches are distributed among these distances:
833 32 0.01
834 2 0.00
835 1 0.00
837 3 0.00
839 1 0.00
842 1 0.00
845 2 0.00
848 3 0.00
850 2 0.00
852 1 0.00
854 218 0.04
855 25 0.00
856 266 0.04
857 15 0.00
858 2 0.00
859 186 0.03
865 3 0.00
867 39 0.01
868 409 0.07
869 47 0.01
870 2 0.00
872 9 0.00
873 1 0.00
875 2 0.00
876 167 0.03
877 1 0.00
878 50 0.01
879 118 0.02
880 78 0.01
883 1 0.00
885 2 0.00
886 2 0.00
887 1 0.00
888 1 0.00
889 34 0.01
890 24 0.00
891 441 0.07
892 1 0.00
893 1 0.00
895 434 0.07
896 12 0.00
897 11 0.00
898 344 0.06
899 716 0.12
900 532 0.09
901 181 0.03
902 534 0.09
903 515 0.08
904 217 0.04
905 435 0.07
906 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
TGCTGCCACAACCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCAGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTGAGATTTTTTAAAATTTTTTCGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
TCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
GCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGACGCTCAGCCGGCCAGAGGGGCG
GGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
Found at i:1388282 original size:26 final size:26
Alignment explanation
Indices: 1388246--1388298 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1388236 CTGGTCTGAT
*
1388246 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1388272 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1388298 C
1 C
1388299 CTAAGTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1390907 original size:25 final size:26
Alignment explanation
Indices: 1390860--1390912 Score: 90
Period size: 25 Copynumber: 2.1 Consensus size: 26
1390850 TTCGGTCTGA
1390860 GCTTAGACTGGGAATGAAATCCGTAT
1 GCTTAGACTGGGAATGAAATCCGTAT
*
1390886 GCTTAGACT-GGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAAATCCGTAT
1390911 GC
1 GC
1390913 CTAAGTCCAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAAATCCGTAT
Found at i:1391793 original size:26 final size:26
Alignment explanation
Indices: 1391764--1391814 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
1391754 GGTCCGATCA
1391764 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
1391790 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
1391815 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:1392274 original size:895 final size:891
Alignment explanation
Indices: 1389927--1392729 Score: 3937
Period size: 891 Copynumber: 3.1 Consensus size: 891
1389917 CGACGATGCT
* * *
1389927 CCAGCACATGCCCGAGCCCAGCATGTGCTG-CTGCAACCCTCGGTCTGGTCTGATCTTAGACTGG
1 CCAGCACATGCCTGAGCCCAGCATGTGCTGTC-ACAACCCTCGGTCTGGTCCGATCTTAGACTGG
* * * * *
1389991 GAATGAACTACGCATGCTTAGACTGGGAATGATCTCCGTATGCCTAAGTTAACCAATGAAACGAG
65 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAG
* * * * * *
1390056 CGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGTCGTGGATCGATCGAGTCCCCCTC
130 CGTACGGACGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGTGGATCGATCGGGTACCCCTC
* * * * *
1390121 TGCGTGCTACCGATCTTGCGGCCGCAACCCTCAATTTGGTATGATCTTAGACTGGGAATGAACTC
195 TACATGCTGCCGATCTTGCTGCCGCAACCCTCAATCTGGT-TGATCTTAGACTGGGAATGAACTC
* * * *
1390186 TGTATGCCTAAGCCAACCGTCGAAACGAGC---GGGC-GGGACTACGCTGGCCAGAGACACGGGA
259 CGTATGCCTAAGCCAACCGTCGAAACGAGCGGGGGGCAGGCACTACGCTGGCCAGAGAGACAGGA
* *
1390247 TGCATAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGCATGCC
324 TGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
1390312 AATGCCATTTTTATGGCTTGGAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATG
389 AATGCCATTTTTATGGCTTGGAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATG
* *
1390377 GCAAGACGACTTGTTTTCTATTTTTCACGATTATCGAAACTTTTTGCGGTTCA-AGATTTTTTAA
454 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCAGAGATTTTTTAA
* *
1390441 AATTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAAT
519 AATTTTTTCGAAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
1390506 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTCAAAAAAGTGTC
584 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
1390571 CCCATTTCAAACACTTTCATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
649 CCCATTTCAAACACTTT-ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
1390636 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAACACCCA
713 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
*
1390701 TCACACATCATGTGCGCACACCCACCTGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCA
778 TCACACATCATGTGCGCACACCC-CCTGG-CCCCCCGATCACTGGAACCCCAATGCCGTCGGTCA
1390766 GGTTCT-C--CGA-------CGATGGTGCCCCGGCGAAGAAAAATGCGGCA
841 GGTTCTCCGACGATGCTCCGCGATGGTGCCCCGGCGAAGAAAAATGCGGCA
* * * * *
1390807 CCAGCACATG-CTGGAGCCCAACATGTGCTGCCACAACCCTCAGT-TCGGTCTGAGCTTAGACTG
1 CCAGCACATGCCT-GAGCCCAGCATGTGCTGTCACAACCCTCGGTCT-GGTCCGATCTTAGACTG
* * * *
1390870 GGAATGAAATCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCCACCCACGAAACAA
64 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGA
* * * * *
1390934 GCATACGGACGCTCAGTC-AGCCAAAGGGGCAGGATGCGCAAGTCGGGGATCGATCGGGTACCCC
129 GCGTACGGACGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGTCGTGGATCGATCGGGTACCCC
* * * * ** *
1390998 TCTACATGCTGTCGATCCTGCTGTCTCAACCCTCAATCCCGTTGATCTTAGACTGAGAATGAACT
193 TCTACATGCTGCCGATCTTGCTGCCGCAACCCTCAATCTGGTTGATCTTAGACTGGGAATGAACT
* * *
1391063 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCGAGCACTACACCGGCCAG
258 CCGTATGCCTAAGCCAACCGTCGAAACGA----GCGGG-GGGCA---G-GCACTACGCTGGCCAG
* * * *
1391128 AGAGACCGTATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
314 AGAGACAGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * ** *
1391193 TCGGCATGCCAATGCCATTTTTATGCCTTGTCAATTCATACAATGGTCCCTTAAGCCTTCACGTG
379 TCTGCATGCCAATGCCATTTTTATGGCTTGGAAATTCATACAATGGTCCGTTAAGCCTTCACGTG
* * * * **
1391258 AAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACAATTTTCAAAACATTTTATGGTTCAGA
444 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCAGA
* *
1391323 -A-TTTTTAAAACTTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATT
509 GATTTTTTAAAA-TTTTTTCGAAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
1391386 TTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTG
573 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
1391451 AAAAAAGTGTACCCATTTCAAACACTTTATTGGCTACTGGCAGCAATCTTGTAAAATCTCAAATG
638 AAAAAAGTGTCCCCATTTCAAACACTTTA-TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
1391516 CTCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGT
702 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* ** * * *
1391581 ACCAGCACCTATTGCACATCATGTGTGCACACCCCCTGGCCCCCCGATCGCTAGAACCCCAATGC
767 ACCAGCACCCATCACACATCATGTGCGCACACCCCCTGGCCCCCCGATCACTGGAACCCCAATGC
* *
1391646 CGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCA
832 CGTCGGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCCCCGGCGAAGAAAAATGCGGCA
** *
1391707 CCAGCACATGCCTGAGCCCAGCATGTGCTGTCGTAACCCTCGGGTCTGGTCCGATCATAGACTGG
1 CCAGCACATGCCTGAGCCCAGCATGTGCTGTCACAACCCTC-GGTCTGGTCCGATCTTAGACTGG
1391772 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAG
65 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAG
* * *
1391837 CGTACGGACGCTCAGCCGACCAGAGGGGTGGGATGCGCAAG-CTGTGGATCGGTCGGGTTCCCCT
130 CGTACGGACGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTC-GTGGATCGATCGGGTACCCCT
*
1391901 CTACATGCTGCCGATCTTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACT
194 CTACATGCTGCCGATCTTGCTGCCGCAACCCTCAATCTGGT-TGATCTTAGACTGGGAATGAACT
*
1391966 CCATATGCCTAAGCCAACCGTCGAAACGAGCGGGTGGGCAGGCACTACGCTGGCCAGAGAGACAG
258 CCGTATGCCTAAGCCAACCGTCGAAACGAGCGGG-GGGCAGGCACTACGCTGGCCAGAGAGACAG
*
1392031 GATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTGCATG
322 GATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* *
1392096 CCAACGCCATTTTTATGGCTTGGAAATTCATACAATGGTCCGTTAAGCCTTCACCTGAAGTTTCA
387 CCAATGCCATTTTTATGGCTTGGAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCA
*
1392161 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTT-AGAGATTTTTT
452 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCAGAGATTTTTT
* * * *
1392225 TAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTATTTTTGTTGGC
517 AAAATTTTTTCGAAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
* *
1392290 ATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATG
582 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* *
1392355 TCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
647 TCCCCATTTCAAACACTTT-ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * * *
1392420 CGAGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACC
711 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * *
1392485 CATCACACACCATGTGCGTACACCCCCCTCCCCCGACCCCCCAGATCACTGGAACCCTAATGCTG
776 CATCACACATCATGTGCGCACA-CCCCCT-----GGCCCCCC-GATCACTGGAACCCCAATGCCG
* * * ** * *
1392550 CCGGCCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCAACAAAGAAAAATACGGCA
834 TCGGTCAGGTTCTCCGACGATGCTCCG-CGATGGTGCCCCGGCGAAGAAAAATGCGGCA
* *
1392609 CCAGCACATTTCC-GAGCCTAGCATGTGCTGTCACAACCCTCGGTCTGGTCCGATCTTAGACTGG
1 CCAGCACA-TGCCTGAGCCCAGCATGTGCTGTCACAACCCTCGGTCTGGTCCGATCTTAGACTGG
* *
1392673 GCATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACAAC
65 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAAC
1392730 CCTCTGTGTG
Statistics
Matches: 1685, Mismatches: 188, Indels: 79
0.86 0.10 0.04
Matches are distributed among these distances:
878 49 0.03
879 118 0.07
880 74 0.04
881 1 0.00
882 2 0.00
886 4 0.00
889 38 0.02
890 17 0.01
891 445 0.26
892 4 0.00
894 3 0.00
895 437 0.26
896 16 0.01
899 10 0.01
900 63 0.04
901 128 0.08
902 223 0.13
903 53 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
CCAGCACATGCCTGAGCCCAGCATGTGCTGTCACAACCCTCGGTCTGGTCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGC
GTACGGACGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGTGGATCGATCGGGTACCCCTCT
ACATGCTGCCGATCTTGCTGCCGCAACCCTCAATCTGGTTGATCTTAGACTGGGAATGAACTCCG
TATGCCTAAGCCAACCGTCGAAACGAGCGGGGGGCAGGCACTACGCTGGCCAGAGAGACAGGATG
CGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
TGCCATTTTTATGGCTTGGAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGC
AAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTGCGGTTCAGAGATTTTTTAAAA
TTTTTTCGAAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTCAAACACTTTATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
CACATCATGTGCGCACACCCCCTGGCCCCCCGATCACTGGAACCCCAATGCCGTCGGTCAGGTTC
TCCGACGATGCTCCGCGATGGTGCCCCGGCGAAGAAAAATGCGGCA
Found at i:1392692 original size:26 final size:26
Alignment explanation
Indices: 1392663--1392715 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1392653 CTGGTCCGAT
*
1392663 CTTAGACTGGGCATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1392689 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1392715 C
1 C
1392716 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1393527 original size:26 final size:26
Alignment explanation
Indices: 1393498--1393550 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1393488 CTGGTCCGAT
*
1393498 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
*
1393524 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCGTATG
1393550 C
1 C
1393551 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCGTATG
Found at i:1395304 original size:26 final size:26
Alignment explanation
Indices: 1395275--1395325 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1395265 CTGATCCGAT
*
1395275 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1395301 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
1395326 CCCAAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1396197 original size:26 final size:26
Alignment explanation
Indices: 1396168--1396220 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1396158 CCGGTCCGAT
*
1396168 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1396194 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1396220 C
1 C
1396221 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1399768 original size:26 final size:26
Alignment explanation
Indices: 1399739--1399791 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1399729 CCGGTCCGAT
1399739 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1399765 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1399791 C
1 C
1399792 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1400220 original size:896 final size:897
Alignment explanation
Indices: 1394401--1400762 Score: 8016
Period size: 895 Copynumber: 7.1 Consensus size: 897
1394391 TCAGTCTGAA
* * * * * * *
1394401 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCCACCCACGAAACAAGCATACGGACGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * **
1394466 CGGCCAGAGGGGTGGGATGTGCAAGTCGGGGATCGGCCGTGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCC
* * *
1394531 TGCTGCTGCAACCTTCGGTCCT-GTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAA-CCA
131 TGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
1394594 ACTGACGAAACAAGCGGGTGGGCGGGCGGGCATTACACCGGCCAGAGA-GATGGGATGCGCAAGC
195 ACCGACGAAACGAGC----GGGCGGGCGGGCACTATACCGGCCAGAGAGGACGGGATGCGCAAGC
* *
1394658 CGT-GATCGATAGGGTGGTAGGTGGG-TTAGGCACATCTTCATATTTTTGGCGTGCC-ATGCCAT
256 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GTGTGCCAATGCCA-
* *
1394720 TTTTTATGGCTTGTAAATTCATACAAT-GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAT
319 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
1394784 GACTCGATTTT-TATTTTTCATGA-ATTTCAAACTTTTTACGGTTC-AGAATTTTTT-TAATTTT
384 GACTCG-TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAG-ATTTTTTAAAATTTT
* ** * * *
1394845 TTCGGAAGGAGTTTTTGGCCTGAAACTTGGTAGACGTGATCCTTAATATTGTTTTTTGGCGTGCA
447 TTTGGAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTT-GTATT-TTTGTTGGCATGC-
1394910 ACAAAAAAAATT-AGCTAAAAAAACTCGAAGTGTACAAGA-TTTGTGACCATTTG-AAAAAGTGT
508 AC-AAAAAAATTCAGCT--AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
1394972 CCCAATTT-AAACACTTTAATGGCTACTGGCACAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
570 CCCCATTTCAAACACTTTAATGGCTACTGG--CAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * *
1395036 GGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATAGAAGGGCTAAGTACCAGCAC
633 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * *
1395101 CCATCGCACATCATGTGTGCACACCCCCACGGCCCCTCCGATCGTCGAAACCCCAATGCC-ACCT
698 CCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGA-CG
* * * * * *
1395165 GTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCAGCAGCCCAT
762 GTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * * * *
1395230 GCTCGAGCCCAGCATGTGCTGCCGAAACCCTCGTTCTGATCCGATCTTAGATTGGGAATGAACTC
827 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
1395295 CGTATG
892 CGTATG
* * * * *
1395301 CTTAGACTGGGAATGAACTCCGTATCCCAAAGTCAACTCACGAAACGAGCGTGCGGGCGCTTAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *****
1395366 TGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCAATTAGGTCCCCCTCTGCGTGCT-CTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGGCCGGGTCCCCCTCTGCGTGCTAC-CGATC
* * * * * * *
1395430 CAGCTACTGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
1395495 ACCGACGAAACGAGCGGGTGGGCGGGCGGGGGGGCACTATGCCGGCCAGAGA-GACGGGATGTGC
195 ACCGACGAAACGAGC----GGGCGGGC----GGGCACTATACCGGCCAGAGAGGACGGGATGCGC
* ** *
1395559 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCATGCCAATAC
252 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
1395624 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
317 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
1395689 AAGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTC-AGGATTTTTTAAAATTT
382 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTT
** * *
1395753 TTTTGGAAGGAGTTTTGGTTCCAAACTTGTTAGACGAGATCCTTGTATTTTTGTTGGCATGCACA
446 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
1395818 AAAAAATTCAGCTAAAAAATCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCAT
511 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * * *
1395883 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTATGGGGCTGC
576 TTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
1395948 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCA
641 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
1396013 CATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCC-ACTGGTCAGG--
706 CATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGAC-GGTCAGGTT
*
1396075 --T------T-CTCCGACGATGGTGCCCTGGA-GAAGAAAAATGCGGCACCAGCACATGCCCGAG
770 CTTCGACGATGCTCCGACGATGGTGCCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* ** *
1396130 CCCAACATGTGCTGTAGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAGTGAACTCCGTATG
834 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
1396194 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
1396259 CGGCCAGAGGGGCGGGAT--GC-A--C-A--A---GCCGAGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCC
* ** * * *
1396313 TGCTGTCGCAACTGTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
1396378 CCGACGAAACGAGCGAGCAGGCAGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGA-GACGG
196 CCGACG-AA--A-CGAGC--G--GGCGGGCGGGC--AC---TA-TAC--CGGCCAGAGAGGACGG
* * **
1396442 GATGCGAAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
245 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
* *
1396507 CCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGACTTCACGTGAAGTTTCA
310 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* *
1396572 TGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTA
375 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTA
* * * *
1396637 AAATTTTTTCGGATGGAGTTTTGG-CTCAAAC-TGG--GTCGTGATCCTTGTA-TTTTGTTTGGC
440 AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG-TTGGC
* *
1396697 ATGCACAAAAAAATTCAGCTAAAAACTCAAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTG
504 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * *
1396762 TCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAG
569 TCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
1396827 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCAGC
634 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* *
1396892 CATCGCACATCATGTGCGCCCACCCCCCCGACCCCCCCGATCGTCGGAACCCTAATGCC-ACTGG
699 CATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGAC-GG
* * * * **
1396956 TCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATGAATAAAAATTTGGCACCAGCACATG
763 TCAGGTTCTTCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * *
1397021 CCCGAACCCAGCATGTGCTACCACAA-CC-C--T-C-G---G----T---CT-GG--T----T-C
828 CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
1397062 G-AT-
893 GTATG
* * * * *
1397065 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
1397130 CGGCCAGAGGGGTGGAATGCGCAAGCCGAGGATCAGCCAGGTCCCCCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * *
1397195 TGCTGTCGTAA--CTCGGTTTGGTCCGATCTTAGATTGGGGATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
1397258 CCGATGAAACGAGGAGGCGGGCGGGCGGGCGGGC-ACTACGTCGGCCAGAGAGG-TGGGATGCGC
196 CCGACGAAAC---GA-GCGGGCGGGCGGGC--ACTA-TAC--CGGCCAGAGAGGACGGGATGCGC
*
1397321 AAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
252 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
* * * *
1397386 CATTTATATGGCTTGTAAATTCATACAATGGTCCCGTAAGCCTTCACGTGCAGTTTCATGGCAAT
317 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
1397451 ACAACTCATTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTT-AAACTT
382 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTT
* ** *
1397514 TTTTCGAAGGAGTTTTGGTGCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
446 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
1397579 AAAAAATTCAGCTACAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
511 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * * * * *
1397644 TCCAGACACTTTAATGGCTAC-AGCAACAAACCTGTAAAATCTCTAATGCTCTTTAAGGGAGCGT
576 TTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
1397708 GTGTTCTCGAGGTTTGATGAGGAATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCA
641 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
1397773 CATCATGTGCGCACAGCCCCCCCGACCCCCCAGATCGTCGGAACCCCAATGCCGTCGGCCAAGTT
706 CATCATGTGCGCACA-CCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTT
* * * * *
1397838 CTCCGACGATACTCCGACGATGGTACCCC-AGCAAAGAAAAATACGGCACCAGCACATGCCCGAG
770 CTTCGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * *
1397902 CCCAGCATGTGCTTCCACAACCCTCGGTCTGGTCCGATCTTTGACTGGGAATGAACTCCGTATG
834 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
1397966 CTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCAACGAAACGAGCGTACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
1398031 CGGCCAGAGGGGCGGGATGCGCAAGCCATGGATCGACCGGGTCCCCATCTACATGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * *
1398096 TGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * *
1398161 CCGTA-GAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGA-GACGGGAAGCGTAAGCCGTG
196 CCG-ACGAAACGAGCGGGCGGGCGGGCACTATACCGGCCAGAGAGGACGGGATGCGCAAGCCGTG
*
1398224 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTA
260 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
* * * **
1398289 TGGCTTGGAAATTTATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGATAACTCG
325 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * ** * *
1398354 TTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAG
390 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAG
* *
1398419 GACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
455 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
1398484 AGCTAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTGCAAACAC
520 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAC
1398549 TTTAATGGCTA-TGGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
585 TTTAATGGCTACTGG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* **
1398613 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATTACACATCATGT
649 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* ** * * *
1398678 GCGCACA--CCCCCGGCCCCATCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTC-TCCAGCG
714 GCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTTCGA-CG
* ** * *
1398740 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCTAAGGCCAACATG
778 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
1398805 TGCTGTCGCAACCCTAGGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
843 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * * * * *
1398860 CTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCATGTAACAAGCGTGTGGGCACACAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *** * ** ** *
1398925 GGGCCAAAGGGGCGGGATGCTCAAGCTGCGGATCGACCGGGTGACCCTCTATGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCC
** *** ** ** ** * * *
1398990 TATTTTTGTGACCCTCAATCCAGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
1399055 CCGACAAAACAAGCGAGCGGGCGGGCGGACCGACACTACACCGGCTAGAGA-GACGGGATGCGCA
196 CCGAC--GA-AA-CGAGCGGGCGGGCGG---G-CACTATACCGGCCAGAGAGGACGGGATGCGCA
* *
1399119 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTGCTGTGTTCCAATGCC
253 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
*
1399184 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGA
318 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
1399249 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAGGGTTCGGGATTTTTTAAAATTTTT
383 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
1399314 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
448 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AA
*
1399379 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATT
512 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
1399444 TCAAACACTTTAATGGATACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
577 TCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* ** *
1399509 AGTTCTCGAGGTTTGATGTGGGATACAGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCGCAC
642 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * ** *
1399574 ATCATGTGCGCACACCCCCTCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCT
707 ATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCT
* * * ** * * *
1399639 TCGATGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGTACATTCCAGAGCCC
772 TCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
** *
1399704 AGCACATGCTACCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
837 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
1399765 CTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
1399830 CGGCCAGAGGGGCGGGATGCGTAAGCCAAGGATCGGTCGGGT-CCCCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCC
*
1399894 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
1399959 CCGATGAAATGAGCGGGCGGGTGGGCACTATACCGGTCGGAGAGGA-GGGATGCGCAAGCCGTGG
196 CCGACGAAACGAGCGGGCGGGCGGGCACTATACCGGCCAGAGAGGACGGGATGCGCAAGCCGTGG
*
1400023 ATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
261 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
* * *
1400088 GGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTAATGGCAAGACGACTCGT
326 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
1400153 TTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGAGATTTTTTAAAATTTTTTTGAAAGG
391 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGG
* *
1400218 AGTATTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAATTCA
456 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
1400283 GCTAAAAACTCAAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACT
521 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACT
* * *
1400348 TTAGTCGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGA
586 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * **
1400413 GGTTTGATGAAGGATAGGAGGCCATTATAAGAACCAAGTACCAGCACCCATCGCACATCATGTGC
651 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * ** * * *
1400478 GCACATCCCCCCGACCGCCCCGATCACCGGAACCCTAAAGCCG-CTGGTCAGGTTCTTCGGCGAT
716 GCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGAC-GGTCAGGTTCTTCGACGAT
** * * * * *
1400542 GCTCCGGTGATGGTGGCTCGACGAAGAAAAATGCGGCAGCAGCACATGCCTGAGCCCAACATGTG
780 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
1400607 CTGTCGCAACCCTTGGTCCGATCCGATCTTAGACTGAGAATGAACTCCGTATG
845 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
1400660 CTTAGACTGGGAATGAACTCCGTATCCCAAAGTCAACCCATGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
1400725 CGGCCAGAGGGGTGGGACGCACAAGTCAAGGATCGGCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGGCC
1400763 AGTCAGGTTC
Statistics
Matches: 4777, Mismatches: 557, Indels: 261
0.85 0.10 0.05
Matches are distributed among these distances:
871 95 0.02
872 202 0.04
873 8 0.00
874 115 0.02
875 221 0.05
876 25 0.01
877 3 0.00
878 2 0.00
879 6 0.00
880 54 0.01
881 3 0.00
882 122 0.03
883 3 0.00
884 4 0.00
885 7 0.00
886 278 0.06
887 1 0.00
888 7 0.00
889 5 0.00
890 220 0.05
891 6 0.00
892 3 0.00
893 178 0.04
894 312 0.07
895 624 0.13
896 418 0.09
897 178 0.04
898 17 0.00
899 17 0.00
900 174 0.04
901 149 0.03
902 268 0.06
903 268 0.06
904 252 0.05
905 289 0.06
906 93 0.02
907 81 0.02
908 52 0.01
909 17 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCAAGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCC
TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCACTATACCGGCCAGAGAGGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGACGGTCAGGTTCTTCGACGATG
CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:1400663 original size:26 final size:26
Alignment explanation
Indices: 1400634--1400684 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1400624 CCGATCCGAT
1400634 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
1400660 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGAGAATGAACTCCGTAT
1400685 CCCAAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:1402483 original size:890 final size:883
Alignment explanation
Indices: 1400762--1403374 Score: 3424
Period size: 890 Copynumber: 2.9 Consensus size: 883
1400752 AAGGATCGGC
** * *
1400762 CAGTCAGGTTCTCCGACGATGCTCCGACAAAGAAAAATGCTGCACCAGCAC--GCGTCTGAGCCC
1 CAGTCAGGTTCTCCGGTGATGCCCCGACAAAGAAAAATGCAGCACCAGCACATGC-T-TGAGCCC
* * * *
1400825 AGCATGTGCGACCGGAACCCTTGGTCTGATCCAATCTTAGCCTGGGAATGAACTCCGTATGCTTA
64 AGCATGTGCG-CCGCAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
* * * * * *
1400890 CACTGGGAATGAACTCCGTATCCCTTAGTCAGCAAATGAAATGAGCGTGCGGGCGCTCAGCCGGC
128 GACTGGGAATGAACTCCGTATCCCTAAGTCAACCAATGAAACGAGCGTGCGGGCGCTCAGTCGG-
* * * *
1400955 CAGAGGGACGGGATGCGTAAGTTAGGGATC-AGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGC
192 CAGAGGGGCGGGATGCGCAAGCTGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTACCGATCCTGC
* * * *
1401019 TGCCACAACCCTCAGTCCGATCTGATCTTAGACTAGGAATAAACTCCGTATGCTTAAGCCAACCG
256 TGCCACAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * * **
1401084 A-CAA-AA-TGAGCAGACGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTTG
320 AGAAACAAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
1401146 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCAT-TTTTTGGCATGCCAATGTCATTT
385 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCT-GCATGCCAATGCCATTT
* *
1401210 TTATGGCTTCTAAATTCATACAATGGTCCTTGAAGCCTTCACATGAAGTTTCATGGCAGGACGAC
449 TTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACATGAAGTTTCATGGCA-GACGAC
*
1401275 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTC-
513 TTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTCG
* * * *
1401339 AAAGGGGTTTTGGCCCCAAACTTCGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
577 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
1401404 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
642 ATTCAACTAAAAACTC-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAG
*
1401469 ACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTT
706 ACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
1401534 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC-
771 CTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCT
*
1401598 ATGTGCACACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGT
836 ATGTGCACACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATACCGT
** * * *
1401648 CAGTTTGGTTCTCCGGTGATGCCCCGATAAAGAAAAATGCGGCACCAGCACATGCTTGGGCCCAG
1 CAGTCAGGTTCTCCGGTGATGCCCCGACAAAGAAAAATGCAGCACCAGCACATGCTTGAGCCCAG
*
1401713 CATGTGCTGCCGCAACCGTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
66 CATGTGC-GCCGCAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA
* * * *
1401778 CTAGGAATGAACTCCGTATCCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCTA
130 CTGGGAATGAACTCCGTATCCCTAAGTCAACCAATGAAACGAGCGTGCGGGCGCTCAGTCGGC-A
* * * * * *
1401843 GAGGGGTGGGATGCGCAAGCCGGGGATCGACCTGGTGCCCCTCTGCGTGCTGCCGATCCTGCTGC
194 GAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGC
* * *
1401908 CACAACCCTCGGTCCGGTCAGATCTTAAACTGGCAATGAACTTCGTATGCCTAAGCCAACCGATG
259 CACAACCCTCGGTCCGGTCTGATCTTAGACTGG-AATGAACTCCGTATGCCTAAGCCAACCGA-G
* *
1401973 AAACAAGCGGGCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTG
322 AAACAAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
1402038 GATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGCACGCCAATGCCATTTTTA
387 GATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGCATGCCAATGCCATTTTTA
*
1402103 TGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACATGAAGTTTCATAGCGAGACGACTTG
452 TGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACATGAAGTTTCATGGC-AGACGACTTG
*
1402168 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
516 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* * * * *
1402233 GAGTTTTGGCCCCAAACTAGGTAGACGTGCTCATTGTATTTTTGTTGGCATGAACAAAAAAATTC
581 GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
1402298 AACTAAAAACTCACAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCA-TTCAAGACA
646 AACTAAAAACTCA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTC-AGACA
* * *
1402362 CTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGATCTT
709 CTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * * * *
1402427 GAGGTTTGATCAGGGATAAGGGGCCAATATGAGGGCCAAGTGCCAGCACTCATCGCACATCTTGT
774 GAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC-TAT
* *
1402492 GTGCACACACCCCTCGGCCCCCCGATCGTCGGAACCCCAATACCGT
838 GTGCACACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATACCGT
** * * * * *
1402538 TGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAAATACAGCACCAGAACATGCCTGAGCC
1 CAGTCAGGTTCTCCG--G-TGATGCCCCGACAAAGAAAAATGCAGCACCAGCACATGCTTGAGCC
* * * * * * * * *
1402603 CAACATGGGCCGCCGTAACCCTTGATCCGGTCTGATCTTACATTGGGAATGAACTCCATATGCTT
63 CAGCATGTG-CGCCGCAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTT
* * * *
1402668 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCATGCGAGCGCTCAGTCGG
127 AGACTGGGAATGAACTCCGTATCCCTAAGTCAACCAATGAAACGAGCGTGCGGGCGCTCAGTC-G
* * * * * *
1402733 GCAGAGGGGCGGGATACGCCAGCTGAGGATCGGTCGGGTCCCCCTCTGCGTGCTACCAATCCTGT
191 GCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGC
* **
1402798 TGCCACAA--CTTGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
256 TGCCACAACCCTCGGTCCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCG
* * ** *
1402861 ACGAAACGAGCGGGCGGGCGAGCGGGCGGGCACTACG-CTGATCAGAGAGGCGGGATGCGCAAGC
320 A-GAAACAAGCGGGCGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGC
* * **
1402925 CGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
383 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGCATGCCAATGCCATT
* * * * *
1402990 TTTATAGCTTGTAAATTCGTACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
448 TTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACATGAAGTTTCATGGC-AGACGA
* *
1403055 CTTGTTTTCTA-TTTTCACGA-TTTTAAAACTTTTTACGGTTCGGGATTTTTT-AAA-TTTTTCG
512 CTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* *
1403116 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTCGCATGCATAAAAAA
577 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
1403181 ATTCATCTAAAAATCTCAAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTTTGTGACCATTT
642 ATTCAACTAAAAA-CTC-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAG--TGT---C----
1403246 GAAAAAAGTATCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
696 ----------T--CCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
1403311 GCTCTCTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAACGGCCAA
749 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAA
1403375 AAAGATGGAA
Statistics
Matches: 1510, Mismatches: 169, Indels: 73
0.86 0.10 0.04
Matches are distributed among these distances:
885 3 0.00
886 269 0.18
887 80 0.05
888 42 0.03
889 47 0.03
890 496 0.33
891 241 0.16
892 13 0.01
893 207 0.14
894 4 0.00
907 1 0.00
909 104 0.07
910 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (883 bp):
CAGTCAGGTTCTCCGGTGATGCCCCGACAAAGAAAAATGCAGCACCAGCACATGCTTGAGCCCAG
CATGTGCGCCGCAACCCTTGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGAC
TGGGAATGAACTCCGTATCCCTAAGTCAACCAATGAAACGAGCGTGCGGGCGCTCAGTCGGCAGA
GGGGCGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCA
CAACCCTCGGTCCGGTCTGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCGAGAAAC
AAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCTTTAAGCCTTCACATGAAGTTTCATGGCAGACGACTTGTTTTC
TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTA
AAAACTCAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAAT
TGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTATGTGCACAC
ACCCCCCGGCCCCCCGATCGCCGGAACCCCAATACCGT
Found at i:1402884 original size:12 final size:12
Alignment explanation
Indices: 1402867--1402891 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1402857 ACCGACGAAA
1402867 CGAGCGGGCGGG
1 CGAGCGGGCGGG
1402879 CGAGCGGGCGGG
1 CGAGCGGGCGGG
1402891 C
1 C
1402892 ACTACGCTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.28, G:0.64, T:0.00
Consensus pattern (12 bp):
CGAGCGGGCGGG
Found at i:1403238 original size:21 final size:21
Alignment explanation
Indices: 1403212--1403254 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
1403202 TGTACATGAT
1403212 TTTGTGACCATTTGAAAAAAG
1 TTTGTGACCATTTGAAAAAAG
1403233 TTTGTGACCATTTGAAAAAAG
1 TTTGTGACCATTTGAAAAAAG
1403254 T
1 T
1403255 ATCCCCATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (21 bp):
TTTGTGACCATTTGAAAAAAG
Found at i:1403819 original size:469 final size:452
Alignment explanation
Indices: 1402915--1403823 Score: 1328
Period size: 469 Copynumber: 2.0 Consensus size: 452
1402905 GAGAGGCGGG
* * *
1402915 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGTGTGC
1 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGCCACATATTCATATTTCTATGTGC
* * *
1402980 CAATGCCATTTTTATAGCTTGTAAATTCGTACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
66 CAATACCATTTTTATAGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACATGAAGTTTCAT
*
1403045 GGCAAGACGACTTGTTTTCTATTTTCACGATTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAT
131 GGCAAGACGACTCGTTTTCTATTTTCACGATTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAT
* *
1403110 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTCGCATGCAT
196 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCATTGTATTTTTGTTCGCATGCAC
* *
1403175 AAAAAAATTCATCTAAAAATCTCAAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTTTGTGA
261 AAAAAAATTCAGCTAAAAATCTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG-TTGT-A
1403240 CCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATC
324 CC-------------AT--CCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATC
1403305 TCAAATGCTCTCTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAACG
374 TCAAATGCTCTCTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAACG
1403370 GCCAAAAAGATGGA
439 GCCAAAAAGATGGA
* *
1403384 ATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATATTCATATTTCTATGTGC
1 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGCCACATATTCATATTTCTATGTGC
* * *
1403449 CAATACCATTTTTATGGCTTTTAAATTCATACAACGGTCCTTTAAGCCTTCACAT-AATGTTTCA
66 CAATACCATTTTTATAGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACATGAA-GTTTCA
* * *
1403513 TGGCAAGACGACTCGTTTTCTATTTTCATGATTTTGAAACTTTTTACGGTTTGGGATTTTTTAAA
130 TGGCAAGACGACTCGTTTTCTATTTTCACGATTTTAAAACTTTTTACGGTTCGGGATTTTTT-AA
* * *
1403578 ATTCTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGCTCATTGTATTTTTGTTGGCATG
194 ATT-TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCATTGTATTTTTGTTCGCATG
**
1403643 CACAAAAAAATTCAGCTAAAAA-CTCGCAGTGTACAAGATTTTGTGACCATTTGAAAAAAG-TGT
258 CACAAAAAAATTCAGCTAAAAATCTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTGT
*
1403706 -CC-T-CATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAACTGCTCTCTA
323 ACCATCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTCTA
* * *
1403768 ATGGGGTGTGAGTTC-CTGAGGTTTGATAAGGGATAGAGGGCCAATATAAGGGCCAA
388 AGGGGGTGTGAGTTCTC-GAGGTTTGATAAGGGATAGGGGGCCAATATAACGGCCAA
1403824 GTACCAGCAC
Statistics
Matches: 408, Mismatches: 28, Indels: 28
0.88 0.06 0.06
Matches are distributed among these distances:
448 1 0.00
449 109 0.27
452 1 0.00
466 2 0.00
468 5 0.01
469 173 0.42
470 40 0.10
471 77 0.19
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33
Consensus pattern (452 bp):
ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGCCACATATTCATATTTCTATGTGC
CAATACCATTTTTATAGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACATGAAGTTTCAT
GGCAAGACGACTCGTTTTCTATTTTCACGATTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAT
TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCATTGTATTTTTGTTCGCATGCAC
AAAAAAATTCAGCTAAAAATCTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTGTACC
ATCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTCTAAGG
GGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAACGGCCAAAAAGATGGA
Found at i:1404023 original size:26 final size:26
Alignment explanation
Indices: 1403994--1404045 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1403984 TAGTCCGATT
1403994 TTAGACTGGGAAAGAACTCCGTACGC
1 TTAGACTGGGAAAGAACTCCGTACGC
* *
1404020 TTAGACTGGGAATGAACTCTGTACGC
1 TTAGACTGGGAAAGAACTCCGTACGC
1404046 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (26 bp):
TTAGACTGGGAAAGAACTCCGTACGC
Found at i:1405761 original size:26 final size:26
Alignment explanation
Indices: 1405722--1405825 Score: 165
Period size: 26 Copynumber: 4.0 Consensus size: 26
1405712 TCTAATCGAT
1405722 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
1405748 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1405774 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1405800 CTTGGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1405825 C
1 C
1405826 CTAAGTCAGC
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
25 17 0.23
26 56 0.77
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1405842 original size:52 final size:52
Alignment explanation
Indices: 1405733--1405842 Score: 123
Period size: 52 Copynumber: 2.1 Consensus size: 52
1405723 TTAGACTGGG
* * * **
1405733 AATGAACTCCGTATGCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGGG
1 AATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCTAAGACAGCC
* * *
1405785 AATGAACTTCGTATGCTTGGACTG-GAATGAACTCCGTATGCCTAAGTCAGCC
1 AATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATG-CTAAGACAGCC
*
1405837 CATGAA
1 AATGAA
1405843 ACGAGCATGC
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
51 15 0.31
52 33 0.69
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (52 bp):
AATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCTAAGACAGCC
Found at i:1408053 original size:26 final size:26
Alignment explanation
Indices: 1408023--1408073 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1408013 TGACTTAGGT
1408023 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
* *
1408049 ATACGGAGTTCGTTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
1408074 ATCGAACTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:1408954 original size:26 final size:26
Alignment explanation
Indices: 1408918--1408970 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1408908 GTTGACTTAG
*
1408918 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1408944 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1408970 G
1 G
1408971 ATCAGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1409273 original size:897 final size:893
Alignment explanation
Indices: 1407381--1411245 Score: 5172
Period size: 896 Copynumber: 4.3 Consensus size: 893
1407371 NNNNNNNNNN
* * * *
1407381 CCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCAATTGATATTTTACAGGTT
1 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
1407446 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
66 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
1407511 TACACTTCGAGTTTTTAGCTGAATTTTTGTGTGCACTGCCCACAAAAATAAAAGGATCACATCTA
131 TACACTTCGAGTTTTTAGCTGAATTTTT-TGTGCA-TGCCAACAAAAATACAAGGATCACATCTA
* * * *
1407576 CCAAGTTTGGGGCCAAAACTACTTCC-GAAAA-TTAAAAAAATCCTAAACCTGTAAAAAGTTTCA
194 CCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCTGAACC-GTAAAAAGTTTC-
* *
1407639 AAAAATCGTGAAAAATAGAAAACGAGTCATC-TACCTATG-AACTTCACGTGAAGGCTTAAGGGA
257 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC-ATGAAACTTCACGTGAAGGCTTAAGGGA
* *
1407702 CCATTGTATGAATTTAACATGCCATAAAAATGGCATTGGCATGCAGAAATATG-AGATGTGCCTA
321 CCATTGTATGAATTT-ACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTA
*
1407766 AACCCAACTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCGGCGTAGTGCCC
385 AACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCGGCGTAGTGCCC
* * ** *
1407831 GCCCGCC-CGC-TCAACG-TTCGTCGGATGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
450 GCCCGCCACCCACCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
** * ** * **
1407893 CAGACCGGACCGA-GGTTGTGGCAACACG-ATCGAAAGCACACAGAGGGGACCTGGTCGATCCCC
515 CAGACCGGA-CGAGGGTTACGGCAGCA-GAATCGGTAGCACACAGAGGGGACCCGACCGATCCCC
* *
1407956 GGCTTGTGCATCCCG-CCCTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
578 GACTTGCGCATCCCGCCCCTT-TGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTA
* * *
1408020 GGTATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTCCCAGTCTAAGATC-GAACTGG
642 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGG
* * *
1408084 ACCGAGGGTTGC-AGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCATATTTTTCTTTATCG
706 ACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCG
* * * *
1408148 GGGCACCATCGTTGAGCATCGCCGGAGAACCTAACCGGCGGCATTGGGGTTCCGGCGATCAGGGG
770 GGGCACCATCG-CGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGG
*
1408213 GGCCGGGGGGTG-GCGCACATGATGTGCGATGGATGCTGGTATTTGGCCCTTATATTGGCC
834 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGG-C
1408273 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
1 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * **
1408338 TGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACAC-TTTTTCAAATGCTCACAAAAAATTG
66 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
1408402 TACACTTCGAGTTTTTAGCTGAATTTTTTGTGAATGCCAATAAAAATACAAGGATCCCATCTACC
131 TACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACC
* * *
1408467 AAGTTTGGGGCCAAAATTCCTTCCAAAAAATTTGAAAAAAATCCTGAACCGTAAAAAGTTTTAAA
196 AAGTTTGGGGCCAAAACTCCTTCCAAAAAATTT-TAAAAAATCCTGAACCGTAAAAAGTTTCAAA
*
1408532 AATCGTGAAAAATAGAAAATGAGTCGTCTTG-CATGAAACTTCACGTGAAGGCTTAAGGGACCAT
260 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
1408596 TGTATGAATTTACAAGCCATAAAAATGGCATTGGC-TCACAGAAATATGAAGATGTCCCTAAACC
325 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-ACAGAAATATGAAGATGTGCCTAAACC
* * *
1408660 CACCTACCACCCTATCGATCCACGG-TTGCGCATCCTGCCTCTCTGGTCGGCGTAGTGCCCGCCC
389 CACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * * *
1408724 GCCTACCCACCCGTTTGTTTCGTCGGTTGGCTCAGGCATATGGAGTTCATTTCTAGTCTAAGATC
454 GCC-ACCCACCC--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
*** * * * * *
1408789 AGATTAGATCGAGGGTTGCAGCAGCAGAATCGGTAGCACATAGACGGGGACCGGACCGATCCCTG
516 AGACCGGA-CGAGGGTTACGGCAGCAGAATCGGTAGCACACAGA-GGGGACCCGACCGATCCCCG
* *
1408854 ACTTACGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCCTGGGTTGACTTAGG
579 ACTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
*
1408919 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACT-GACC
644 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACC
* * *
1408983 GAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGC
709 GAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGC
* *
1409048 ACCATCGCAGAAGCATCGCCGGCGAACCTGACCGACGGCATTGGGGGTTCAGGCGATCGGGGGGG
774 ACCATCGC-G-AGCATCGCCGGAGAACCTGACCGACGGCATT-GGGGTTCCGGCGATCGGGGGGG
*
1409113 CCGGAGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTAGCCCTTATATTGGC
836 CCGG-GGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGC
*
1409172 CCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGAATTTGAGATTTTACAGGTT
1 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
1409236 TGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTG
66 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
1409300 TACACTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAACGATCACGTCTAC
131 TACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTAC
* * * **
1409364 GAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGGACCACAAAAAGTTTCAA
195 CAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAA
* * * *
1409429 AAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCGTGAAACTTCTCGTGAAGGATTAAGGGACCA
259 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
1409494 TTGTATGAATTTACAAGCCATAAAAATGGCTTTGGCATACAGAAATATGAAGATGTGCCTAAACC
324 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACC
* *
1409559 CACCTACCACCCTATCAATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCTC
389 CACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCGGCGTAGTGCCCGC-C
* * **
1409624 AC-CCGCCCA--CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATTG
453 -CGCCACCCACCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * ** * *
1409686 GACTGGACAGAGGGTTATGGTAGCA-ATATTGGCAGCATGCAGAGGGGGTCCCGACCGACCCCCG
517 GACCGGAC-GAGGGTTACGGCAGCAGA-ATCGGTAGCACACAGA-GGGGACCCGACCGATCCCCG
* * * * * *
1409750 GCTTGCGTATCCCGCCCCTTTGGCCAGCTGAGCACCCGCACGCTCGTTTCGTGTGTTGACTTAGG
579 ACTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG
* * *
1409815 CATACGTAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGACC
644 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACC
* * * *
1409880 GAGGGTTCCCACAGCACATGCTGGGCTCGGGCATGTGCTTGTGCCACATTTTTCTTCGTCGGGGC
709 GAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGC
* * *
1409945 ACCACCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGC
774 ACCATCG-C-GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGC
* * * *
1410009 C-GGGGGTGTGCGCACACGATGTACGATGGGTGCTGCTACTTTGGCCC-TATATTGGC
837 CGGGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTAC-TTGGCCCTTATATTGGC
*
1410065 CCCTTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
1 CCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
1410130 TTGCTGCCATTAGCCCATTAAAGTGTCTG-TATGGGGACACTTTTTTCAAATGGTCACAAAATCT
65 TTGCTGCCAGTAG-CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
*
1410194 TGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
129 TGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTA
* * * ** * ** *
1410259 CGAAGTTTGGAGCCAAAATTCCTTCCGAAAAGCTTTTAAAAAACCCCAAACCGCAAAAAGTTTCA
194 CCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCA
* * *
1410324 AAAATTGTGAAAAATAGAAAACGAGTCATCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
258 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *** *
1410389 ATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTTCCTAAAC
323 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAAC
* * * ** *
1410454 CCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCTGCC
388 CCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
1410519 CGCC-CGC-CCCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
453 CGCCACCCACCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * *
1410582 ATCGGACTATGGGTTACGGCAGCAGGATCGGTAGCACGCAGAAGGGGACCCGACCGATCCCCGAC
518 ACCGGACGA-GGGTTACGGCAGCAGAATCGGTAGCACACAG-AGGGGACCCGACCGATCCCCGAC
** * * * *
1410647 TTGCGCATCCTACCCCTCTGGCCGGTTAAGTGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
581 TTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCA
* * * *
1410712 TACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAATATCAGATTGGACCAG
646 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-C--
* * * * * * *
1410777 ACAGAGGGTTGCGATAGCACATGTTGGGCTCTGGCATGTGCTGGTGCCGCATTTCTCTTCGTC-A
708 -C-GAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGG
* * * *
1410841 GG-------GC-AGCATCGCCGGAGAACCT-AGCCGATGGCATTAGGGTTCCGGTGATCGAGGGG
771 GGCACCATCGCGAGCATCGCCGGAGAACCTGA-CCGACGGCATTGGGGTTCCGGCGATCGGGGGG
* * * * * *
1410897 TCCGGGGGGTGTGCACACATGATGTGCAATGGGTACCGGTACTTGGCCCTTATATTGGC
835 GCCGGGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGC
* ** * * *
1410956 CCCTATCCCTCATCAAACCTAGAGAACTCACACCATCTTAAAAACCATTTGAGATTTTACAGCTT
1 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
1411021 TGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTG
66 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
1411086 TACACTTCGTGTTTTTAGCTGAATGTTTTTGTGCATGCCAAGAAAAATACAAGGATCACATCTAC
131 TACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTAC
* *
1411151 CAAGTTTGGGGCCAAAACTCGTTGCGAAAAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTC-
195 CAAGTTTGGGGCCAAAACTCCTT-CCAAAAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTCA
* **
1411214 AAAATCATGAAAAATAGAAAATAAGTCGTCTT
258 AAAATCGTGAAAAATAGAAAACGAGTCGTCTT
1411246 TTTTGGCCCT
Statistics
Matches: 2634, Mismatches: 278, Indels: 124
0.87 0.09 0.04
Matches are distributed among these distances:
888 2 0.00
889 177 0.07
890 281 0.11
891 196 0.07
892 117 0.04
893 45 0.02
894 40 0.02
895 315 0.12
896 639 0.24
897 279 0.11
898 240 0.09
899 165 0.06
900 134 0.05
901 3 0.00
902 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (893 bp):
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACC
AAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGC
CACCCACCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
GGACGAGGGTTACGGCAGCAGAATCGGTAGCACACAGAGGGGACCCGACCGATCCCCGACTTGCG
CATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGG
AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
GCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCG
CGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTG
TGCGCACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATATTGGC
Found at i:1409851 original size:26 final size:26
Alignment explanation
Indices: 1409814--1409866 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1409804 GTTGACTTAG
*
1409814 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1409840 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1409866 G
1 G
1409867 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1410739 original size:26 final size:26
Alignment explanation
Indices: 1410709--1410760 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1410699 GTTGACTTAG
1410709 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
1410735 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1410761 TATCAGATTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1414714 original size:26 final size:26
Alignment explanation
Indices: 1414685--1414737 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1414675 GTTGACTTAG
*
1414685 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCACAATCTAA
* *
1414711 GCATACTGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAATCTAA
1414737 G
1 G
1414738 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAATCTAA
Found at i:1415196 original size:887 final size:892
Alignment explanation
Indices: 1413808--1415887 Score: 2680
Period size: 887 Copynumber: 2.3 Consensus size: 892
1413798 GTTGACTTAG
* * * * * * * * *
1413808 GCATACGGAGTTCATTCCCAATCTAAGATCGGAACGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCACAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCACATGCTAGG
* * * * * * *
1413873 TTTGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGCCAGGGCACCA-C-TC--AGC-TC-T-GGAGA
** * * * * * * *
1413938 ACCTGATAGGCGGAATTGGGGTTAC-AACAATCGGGGGGCCGAGGGGGGGTGTGCGCACATGATT
124 ACCTGACCGGCAGCATTAGGGTT-CGAGCGATCGGGGGGTC---GGGGGGTGTGCGCACATGATG
* * *
1414002 TGTGATGGGTGCTGGTACTTGGTCGTTATATAGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
185 TGCGATGGGTGC-GGTACTTGGCCCTTATAT-GGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
1414067 AAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAAACATTAAAGTGTCTGAA
248 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAAACATTAAAGTGTCTGAA
* *
1414132 ATGAGGACACTTTGTTGAAATGGTCACAAAAGCTTGTTCACTTCGAGTTTTTAGCTGATTTTTTT
313 ATGAGGACACTTTGTTCAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT
* * * * **
1414197 TTGCATGCGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAATACTCCTTCTGAAAA
378 TTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAA
*
1414262 AATTTTAAAAAATCCCAAACCGCTAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCT
443 AATTTTAAAAAATCCCAAACCGCTAAAAATTTCAAAAATCATGAAAAATAGAAAATGAGTCATCT
*
1414327 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGC
508 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACAACTGTATGAATTTACAAGCCATAAAAATGGC
* *
1414392 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCATGTACCACCCTATCGATCCACGACTTAC
573 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCAACGACTTAC
* * * *
1414457 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTACGCCCGCCCGCTCGTTTCGTCGGTTGG
638 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCACGCCCGCCCGCTCATTTCATCGATTGG
* * *
1414522 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGATGGCTACGGTAGTAGGAT
703 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGCTACGGTAGTAGGAT
* * *
1414587 CGGCAGGAC-ACAGAGGGGGACCCAACCGATCCCC-AGCTTGCG-ATTCCCGCCTCTCTGG-CTG
768 CGGCA-CACTACAGAGGGGGACCCAACCGATCCCCGA-CTTGCGCA-TCCCGCCCCTCTGGCCAG
* ** * * * ** *
1414648 ACTGAG-CCCCGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
830 -CTGAGTCACCAAACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCCAA
* * *
1414711 GCATACTGAGTTCATTCACAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCACATTCTAGG
1 GCATACGGAGTTCATTCACAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCACATGCTAGG
* * * *
1414776 CTCGGGCATTTGTTGGTG-CTGCATTTTTCTTCGCCAGGGCACCA-TC-GC-C-GGAGAACTTGA
66 CTCGGGCATGTGCTGGTGTC-ACATTTTTCTTCGCCAGGGCACCACTCAGCTCTGGAGAACCTGA
* * *
1414836 CCGGCGGCATTGGGGTTCCGA-CGAT-TGGGGGTC-GGGGGTGTGCGCACATGATGTGCGATGGG
130 CCGGCAGCATTAGGGTT-CGAGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
1414898 TGCGGCTACTTGGCCCTTATACTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCT
194 TGCGG-TACTTGGCCCTTATA-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* ** *
1414963 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
257 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAAACATTAAAGTGTCTGAAATGAGGACA
* * * *
1415028 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGACTTTTTTTTTGCGTAC
322 CTTTGTTCAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTAGCTGA-TTTTTTTTTGCATAC
* *
1415093 CAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAA
386 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAA
* ** * **
1415158 AAAATCCCGAACCG-TAAAAATTTTGAAAATCGTGAAAAATAGAAAATGAGTTGTCTTGCCATGA
451 AAAATCCCAAACCGCTAAAAATTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGA
* *
1415222 AACTTCACGTGGAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
516 AACTTCACGTGAAGGCTTAAGGGACAACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * *
1415287 GCAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCAACGGCTTGCGTATCCCG
581 GCAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCAACGACTTACGCATCCCG
* * * ** *
1415352 TCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGTCCGCCTTCTCATTTCATCGATTGGCTTTGGCA
646 TCTCTCTGGCCGACGTAGTGCCCGCCCGCACGCCCGCCCGCTCATTTCATCGATTGGCTTAGGCA
* * *
1415417 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGTTGCGGTAGTAGGATCGGCACCC
711 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGCTACGGTAGTAGGATCGGCACAC
* * * *
1415482 TGCAGAGGGGGACCCAGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGTTGAGTGACCA
776 TACAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAGTCACCA
*
1415547 AACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCCAA
841 AACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCCAA
* ** * * *
1415599 GCATACGGAGTTCATTCGCAGTCTAAGATTGGACCTGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCACAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCACATGCTAGG
* * *
1415664 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACGATCTCTGAAGCATTGCTGGAGA
66 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGCCAGGGCACCA-CTC---AGC--T-CTGGAGA
* *
1415729 ACCTGACCGGCAGCATTAGGGTTCTAGCGATCGGGGGGTCGGGGGGGTGTGCACACATGATGTGC
124 ACCTGACCGGCAGCATTAGGGTTCGAGCGATCGGGGGGTC-GGGGGGTGTGCGCACATGATGTGC
*
1415794 G-TGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
188 GATGGGTG-CGGTACTTGGCCCTTATA-TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
1415858 CCCCCTTAAAGAGCTTTTGAGATTTGACAG
251 CCCCCTTAAAGAGCATTTGAGATTTTACAG
1415888 ATTTTTGTTC
Statistics
Matches: 1024, Mismatches: 126, Indels: 56
0.85 0.10 0.05
Matches are distributed among these distances:
886 3 0.00
887 512 0.50
888 227 0.22
889 1 0.00
890 2 0.00
891 6 0.01
892 28 0.03
893 1 0.00
894 2 0.00
895 1 0.00
897 2 0.00
898 3 0.00
899 29 0.03
900 8 0.01
901 84 0.08
902 26 0.03
903 89 0.09
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (892 bp):
GCATACGGAGTTCATTCACAGTCTAAGATCAGACCAGACCAAGGGTTACGACAGCACATGCTAGG
CTCGGGCATGTGCTGGTGTCACATTTTTCTTCGCCAGGGCACCACTCAGCTCTGGAGAACCTGAC
CGGCAGCATTAGGGTTCGAGCGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CGGTACTTGGCCCTTATATGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAAACATTAAAGTGTCTGAAATGAGGACACTTT
GTTCAAATGGTCACAAAAGCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTTGCATACCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
CCCAAACCGCTAAAAATTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACAACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGA
AATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCAACGACTTACGCATCCCGTCTCT
CTGGCCGACGTAGTGCCCGCCCGCACGCCCGCCCGCTCATTTCATCGATTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGGGCTACGGTAGTAGGATCGGCACACTACAG
AGGGGGACCCAACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCAGCTGAGTCACCAAACGC
TCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAATCCAA
Found at i:1418327 original size:850 final size:856
Alignment explanation
Indices: 1415889--1420804 Score: 5367
Period size: 906 Copynumber: 5.6 Consensus size: 856
1415879 ATTTGACAGA
* **
1415889 TTTTTGTTCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-TGCCTTC
1 TTTTTGTGCATGCCAA-AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACT-CCTTC
*
1415953 CGAAAAAATTTTAAAAAATCCTAAATCGCAAAACGTTTCAAAAATCGTGAAAAATAGAAAACGAG
64 CGAAAAAATTTTAAAAAATCC----T--CAAACCG--TC----A-----AAAAATAGAAAACGAG
* *
1416018 TCGTCTTGCCTTGAAACTTCACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
112 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
1416083 AATGGCATTGGCATGTAAGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
177 AATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * ** * * *
1416148 GCTTGCGCATCCAGTCTCTCTGGCCGGCA-TAATGCCCACCCATCTGCCCGCACGTTTCGTTGGT
242 GCTTGCGCATCCCGTCTCTCTGGCCGACAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * *
1416212 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG-ATCAGTCTGGACCGAGGGTTGCTG-CAGC
307 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-AGACCGGACCGAGGGTTGC-GACAGC
* * *
1416275 AGGATCGAC-GACACGCGGAGAGGGACCCGACCGATCCTCGGCTTGTGCATCCCACCCCTCTGGC
370 AGGATCGGCAG-CACGCAGAGGGGGACCCGACCGATCC-CGGCTTGTGCATCCCACCCCTCTGGC
** * * *
1416339 CGGTTAAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
433 CGACTGAGCGCCCGCATGCTTGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * *
1416404 TGATCGGA-TCAGACCGAGGGTTGCGGCAGCAAATCCTGGGCTCGAGCATGTGCTGGTGCCGTAT
498 AGATCGGACT-AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
** ** * * *
1416468 TTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTTGGAGAACCTGACTGACGGCATTGGGGTTT
562 TTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTC
* * *
1416533 CGACGATCGGGGGGGCCGGGGGGGGTGTGCGCACACGATGTGTGATGGGTACTGGTACTTGGCCC
627 CGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
1416598 TTATATT-GGCCCCTATCCCTCATCAAGCCTTGAGAACTCACACCACCTTAAAGAGCATTTGAGA
691 TTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
** *
1416662 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATCAGGACACTTTTTTTAAATGGTC
756 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
1416727 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
821 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
1416763 TTTTTGTGCATGCCAAAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCC-
1 TTTTTGTGCATGCCAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
1416827 AAAAAATTTTAAAAAATCC-CGAACCGTAAAAAGTTTCAAAAATCGTGAATAATAGAAAACGAGT
66 AAAAAATTTTAAAAAATCCTCAAACC-------G--TC---AA-----AA-AATAGAAAACGAGT
1416891 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
113 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* ** *
1416956 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCATGTACCACCCTATCGATCCACGA
178 ATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
*
1417021 CTTACGCATCCCGTCTCTCTGGCCGAC-GTAGTGCCCGCCCGTACGCCCGCCCGCTCGTTTCGTC
243 CTTGCGCATCCCGTCTCTCTGGCCGACAGTAGTGCCCG-CC---CGCCCGCCCGCTCGTTTCGTC
* * * * * **
1417085 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAG-ATCAGACCAGACCGATGGCTACGGTA
304 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-AGACCGGACCGAGGGTTGCGACA
* * * * * * * *
1417149 GTAGGATCGGCAGGACACAGAGGGGGACCCAACCGATCCCCAGCTTGCG-ATTCCCGCCTCTCTG
368 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-CCCGGCTTGTGCA-TCCCACCCCTCTG
* **
1417213 GCTGACTGAGC-CCCGCATGCTTGTTTCGTGGGTTGACTT-AG-----GGA--T-A--CGGAGTC
431 GCCGACTGAGCGCCCGCATGCTTGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTC
* * * * *
1417266 TAAGATCCGACTGGACCCAAGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
496 TAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * *
1417331 TTTTTCTTCATCGGGGCACCATCGTTGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTT
561 TTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTT
* *
1417396 CCGACGATCGGGGGGGCC-GTGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
626 CCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
1417460 TTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTTTTGAGA
691 TTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
1417525 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
756 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
1417590 ACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATT
821 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
1417625 TTTTTGTGCATGCC-AAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCA
1 TTTTTGTGCATGCCAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
1417689 AAAAAATTTTCAAAAATCCTC-AACCG-C-AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
66 AAAAAATTTTAAAAAATCCTCAAACCGTCAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
1417751 CACATGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAA
131 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAA
* *
1417816 AATATGAAGATGTGCCTAAACCCACCTACCACCCGATCTATCCACGGCTTGCGCATCCCGTCTCT
196 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * *
1417881 CTGGTCGACAG-AGTGCCCGCCCGCCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGGAGT
261 CTGGCCGACAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** * * * * * *
1417945 TCATTCCCAGCCTAAGAATAGATCAAACCAAGGGTTGCTACAGCAGCATTGGCAGCATGCAAAGG
326 TCATTCCCAGTCTAAGAATAGACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGG
** * *
1418010 GGGACCCGACCGATCTCCGATTTGTGCATCCCATCCCTCTGGCCGACTGAGCGCCCGCATGCTCG
391 GGGACCCGACCGATC-CCGGCTTGTGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCATGCTTG
* * *
1418075 TTTCGTGGGTTGACTTAAGCATATGGAGTTCATTCCCAGTCTAATATCGGACTAGATCGAGGGTT
455 TTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTT
* * * * *
1418140 GCGGCAGCACATGTTGGGCTGGGGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATTG
520 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCG
* *
1418205 TCGAAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGG
585 TCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG
* * * *
1418270 GTGTG-GCAAATGATGTGTGATGGGCGCTGGTACTTGGCCCATATATTGGGCCCCTATCCCTCAT
650 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCAT
*
1418334 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
715 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
1418399 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
780 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-T
1418464 TTTTA-C-GAAATT
844 TTTTAGCTG-AATT
* * ** *
1418476 GTTTTGTGCATGCCAACAAAAATACAAGGATCACATATACCAAGTTTGCAGCCAAAACTCCTTCT
1 TTTTTGTGCATGCCAA-AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC
**
1418541 GAAAAAATTTTAAAAAATGCCGAATCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
65 GAAAAAATTTTAAAAAAT-CC---TC----AAA---CCG----TCA--AAAAATAGAAAACGAGT
* * * *
1418606 CGTCTTGCTATGAAACTTCGCGTGAAAGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAA
113 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
1418671 ATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCTATCCACGG
178 ATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** **
1418736 CTTGCGCATCCCGTCTCTCTGGCCGGC-GTAGTGCTTGCCCGTTCGCCCGCTTGCTCGTTTCGTC
243 CTTGCGCATCCCGTCTCTCTGGCCGACAGTA--G--TGCCCGCCCGCCCGCCCGCTCGTTTCGTC
* * * * * * * *
1418800 GATTGGCCTAAGCATACGGAGTTCATTCCGAGTCTAATATTAGACCGGACCAAGGGTTGCGACAA
304 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATAGACCGGACCGAGGGTTGCGACAG
* * ** ** * * **
1418865 TAGGATAGGCAGCACATAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATTCTGCCCCTCTGGC
369 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-CCCGGCTTGTGCATCCCACCCCTCTGGC
* * * *
1418930 CGACTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAATCTA
433 CGACTGAGCGCCCGCATGCTTGTTTCGT-GG--G---T-----T-----G---A----C--T-TA
** * *
1418995 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGCGGCAGCACATGTTGG
472 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * **
1419060 GCTCGGGCTTGTGCTAGTGCCACATTTTTCTTCACCGGGGCACCATTG-CTGAAGCATCGTTAGA
537 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTC-GGAGCATCGTCGGA
* * * ** *
1419124 GAACCTGAGCAACGGCATTAGGGTTCCGACGATCGAAGGGGCCGGGGGGGGGTGTGCACACATGA
601 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGGGGTGTGCGCACATGA
* *
1419189 TGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGGCCCGTATCCCTCATCAAACCTCGAGAAC
664 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAAC
1419254 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
729 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
1419319 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
794 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
** * *
1419382 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTCAGGGCCAAAACACCTTCT
1 TTTTTGTGCATGCC-AAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC
*
1419447 GAAAAAATTTTAAAAAATCC-CGAACCGTAAAAAGTTTTGAAAGTCATGAAAAATAGAAAACGAG
65 GAAAAAATTTTAAAAAATCCTCAAACC----------------GTCA--AAAAATAGAAAACGAG
*
1419511 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAA
112 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
**
1419576 AATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
177 AATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
1419641 GCTTGCGCATCCCGCCTCTCTGGCCGA-TGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGT
242 GCTTGCGCATCCCGTCTCTCTGGCCGACAGTAGTGCCCGCCCGCCCG----CCCGCTCGTTTCGT
* * * *
1419705 CGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGC-AGC
303 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATAGACCGGACCGAGGGTTGCGA-C
* * * * *
1419769 AACAGGATCGGTAGCACGCAGAGGGGGACCC-AGCCGATCCCCGGCTTGCGCTTCCCGCCCCTCT
367 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGAT-CCCGGCTTGTGCATCCCACCCCTCT
* * * *
1419833 GGCCGGCTGAGCGCCCGCATGCTTGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATTCCCAAT
430 GGCCGACTGAGCGCCCGCATGCTTGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGT
* *
1419898 CTAAACATACGGAGTTCATTCCCAATCTAAGATTGGGCCGGACCAAGGGTTGCGACAGCACAT-C
495 CT-AAGAT-C-G-G----------A-CT-AGA-----CC-G----AGGGTTGCGGCAGCACATGC
* * * **
1419962 TGGGCTCGTGCATGTGCTGGTGCTGCATTTTTCTTCA-TGGGTG--CCATCGTCGGAGCATCACC
534 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGG-GCACCATCGTCGGAGCATCGTC
* * * * ** *
1420024 AGAGAACCTGACCGGCGGCATTGGCGTTTCGGTGATCGGGGGGGCCGAGGGGGTTGTGCGCACAT
598 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACAT
*
1420089 GATGTGCGATGGATGCTGGTACTTGGCCCTTATATT-GGCCCTCTATCCCTCATCAAACCTC-AG
662 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCC-CTATCCCTCATCAAACCTCGA-
* * *
1420152 GAACTCACACCCCCTTAAAGAGCATTTGAGGTTTTACAGGTTTACTGCCAGTAGCAATTAAAGTG
725 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* **
1420217 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGACTTTTTAATTGAA
790 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
1420282 TT
855 TT
*
1420284 TTTTTGTGCATGCCAAAAAAAAATACAAGGATCATATCTACCAAGTTTGGGGCCAAAACTCCTTC
1 TTTTTGTGCATGCC--AAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
1420349 CGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCGAAAGTCGTGAAAAATAGAAAACGTG
64 CGAAAAAATTTTAAAAAATCCT----C----AAA----C---CGTC--AAAAAATAGAAAACGAG
* * * * *
1420414 TCATCTTCCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTGTGAATTTACAGGCCATAAA
112 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
1420479 AATGGCACTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACG
177 AATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
1420544 GCTTGCGCAGCCCGTCTCTCTGGCCGAC-GTAGTGCCCGCCTGCCTGCCCGCCCGCTCATTTCAT
242 GCTTGCGCATCCCGTCTCTCTGGCCGACAGTAGTGCCCG-C--CC-GCCCGCCCGCTCGTTTCGT
* * * * ** * * **
1420608 CGGTTGGCTTTGGCATACGAAGTTCATTCCCAGTCTAAG-ATCGGATC-GATAGAAGGTTGTGGT
303 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT-AGACCGGACCGAGGGTTGCGAC
* * * *
1420671 AGCAGGATCAGCAGCACGCAGAGGGGGACCCAACCGATCCCAGGCTTGCGCATCCCGCCCCTCTG
367 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC-GGCTTGTGCATCCCACCCCTCTG
** * * ** * * * * * *
1420736 GCCGGTTGAGTGCCCGTACACTCGTTTCATGGGTTGAATTAGGTATACGAAGTTCATTCCCAGTC
431 GCCGACTGAGCGCCCGCATGCTTGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTC
1420801 TAAG
496 TAAG
1420805 CATATGGAGT
Statistics
Matches: 3473, Mismatches: 379, Indels: 353
0.83 0.09 0.08
Matches are distributed among these distances:
837 1 0.00
838 124 0.04
839 30 0.01
840 2 0.00
841 2 0.00
842 169 0.05
843 3 0.00
845 3 0.00
847 1 0.00
848 2 0.00
849 1 0.00
850 318 0.09
851 30 0.01
852 2 0.00
853 57 0.02
854 2 0.00
855 1 0.00
857 2 0.00
861 45 0.01
862 89 0.03
863 148 0.04
864 133 0.04
865 6 0.00
866 2 0.00
867 1 0.00
869 3 0.00
870 1 0.00
871 6 0.00
872 192 0.06
873 213 0.06
874 16 0.00
875 30 0.01
876 122 0.04
877 151 0.04
878 3 0.00
880 26 0.01
881 5 0.00
882 1 0.00
883 3 0.00
884 1 0.00
887 1 0.00
888 1 0.00
890 1 0.00
893 1 0.00
894 1 0.00
895 2 0.00
896 3 0.00
897 2 0.00
900 2 0.00
901 15 0.00
902 341 0.10
903 493 0.14
904 6 0.00
905 55 0.02
906 589 0.17
907 8 0.00
908 1 0.00
910 1 0.00
912 2 0.00
916 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (856 bp):
TTTTTGTGCATGCCAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCG
AAAAAATTTTAAAAAATCCTCAAACCGTCAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGACAGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGAATAGACCGGACCGAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGG
GGGACCCGACCGATCCCGGCTTGTGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCATGCTTGT
TTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTG
CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGT
CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATC
AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATT
Found at i:1419007 original size:26 final size:26
Alignment explanation
Indices: 1418970--1419022 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1418960 GTTGACTTAG
1418970 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
1418996 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1419022 G
1 G
1419023 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:1419913 original size:26 final size:26
Alignment explanation
Indices: 1419877--1419927 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
1419867 TTGACTTAGG
1419877 CATACGGAGTTCATTCCCAATCTAAA
1 CATACGGAGTTCATTCCCAATCTAAA
1419903 CATACGGAGTTCATTCCCAATCTAA
1 CATACGGAGTTCATTCCCAATCTAA
1419928 GATTGGGCCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAA
Found at i:1420950 original size:185 final size:185
Alignment explanation
Indices: 1420628--1421044 Score: 633
Period size: 185 Copynumber: 2.3 Consensus size: 185
1420618 TGGCATACGA
*
1420628 AGTTCATTCCCAGTCTAAGATCGGATC-GA-TAGAAGGTTGTGGTAGCAGGATCAGCAGCACGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCGGACT-GAGGGTTGTGGTAGCAGGATCAGCAGCACGCA
* * * *
1420691 GAGGGGGACCCAACCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGTGCCCGTACA
65 GAGAGGGACCCAACCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACA
1420756 CTCGTTTCATGGGTTGAATTAGGTATACGAAGTTCATTCCCAGTCTAAGCATATGG
130 CTCGTTTCATGGGTTGAATTAGGTATACGAAGTTCATTCCCAGTCTAAGCATATGG
* * *
1420812 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGTAGGATC-GACAGCACGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGTGGTAGCAGGATCAG-CAGCACGCA
*** * * * *
1420876 GAGAGGGACCCGGTCGATCCTAGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCTGCACG
65 GAGAGGGACCCAACCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACA
* *
1420941 CTTGTTTCATGGGTTGACTTAGGTATACGAAGTTCATTCCCAGTCTAAGCATATGG
130 CTCGTTTCATGGGTTGAATTAGGTATACGAAGTTCATTCCCAGTCTAAGCATATGG
*
1420997 AGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGTAGCA
1 AGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGTGGTAGCA
1421045 CATGCTGGGC
Statistics
Matches: 209, Mismatches: 21, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
184 26 0.12
185 182 0.87
186 1 0.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (185 bp):
AGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGTGGTAGCAGGATCAGCAGCACGCAG
AGAGGGACCCAACCGATCCCAGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACAC
TCGTTTCATGGGTTGAATTAGGTATACGAAGTTCATTCCCAGTCTAAGCATATGG
Found at i:1421544 original size:26 final size:26
Alignment explanation
Indices: 1421508--1421560 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1421498 GTTGACTTAG
*
1421508 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
*
1421534 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTAATCCCCAGTCTAA
1421560 G
1 G
1421561 TTTGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTAATCCCCAGTCTAA
Found at i:1422448 original size:26 final size:26
Alignment explanation
Indices: 1422412--1422464 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1422402 GTTGACTTAG
*
1422412 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1422438 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1422464 G
1 G
1422465 ATCGAACCCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1423344 original size:26 final size:26
Alignment explanation
Indices: 1423308--1423360 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1423298 GTTGACTTAG
*
1423308 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
1423334 GCATACGGAGTTCATTTCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1423360 G
1 G
1423361 ATCAAATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1424246 original size:26 final size:26
Alignment explanation
Indices: 1424209--1424261 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1424199 GTTGACTTTG
*
1424209 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1424235 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1424261 G
1 G
1424262 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1424343 original size:901 final size:901
Alignment explanation
Indices: 1421237--1424979 Score: 4675
Period size: 901 Copynumber: 4.2 Consensus size: 901
1421227 ATCAAACCGC
* * * * *
1421237 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTACGCATCCTGCCTCTCTAGCC
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
1421302 GGCGTAGTGCCCG--C-T-CGC-CAGCCCGC-CTGTTTTGTCGGTTGGCGTAGGCATACAGAGTT
66 GACGTAGTGCCCGCCCGTCCGCTC-GCCCGCTC-GTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* ** * * * * * * * * ** ***
1421361 TATTCAAAATCTAAAATCGGATCAGA-TCGAAGGTTGAGGTAGCAGGATCGACAGCACACCGAGG
129 CATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGATAGGTAGCACGTAGAGG
** * ** * * * * * *
1421425 GGGACCCGGTCGAT-TCCAGGCTTGCATATTCTGGCCCTCTGGCTGGTTGAGCACCCGCACACTC
193 GGGACCCGACCGATCCCCA-GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTC
* * *
1421489 GTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGCATACGGAGTTCATCCCCA
257 GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* ** ** * *
1421554 GTCTAAGTTTGGATTAGACCGAGGGTTACGGTAGCACATGTTGGGCTCGGGCATGTGCTGGTGCC
322 GTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* *
1421619 GCATTTTTCTTCGTCGGGGCACCA---TC---G--T---CGGAGAACCTGACCTG-CGGCATTAG
387 GCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC-GACGGCATTGG
*
1421672 GGTTCCGGCGATCGA-GGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGATGCTGGTACTTG
451 GGTTCCGGCGATCGAGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGATGCTGGTACTTG
1421735 GCCCTTATATTGGCCGCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
516 GCCCTTATATTGGCC-CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
1421800 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-TTTTCTTCAAA
580 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT-TTCAAA
* * *
1421864 TGGTCACAAAATCTTGTAAACTTTGAGTTTTTAGCTGAAT-TTTTTTGGGCATGCCAACAAAAAT
644 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTAT--GCATGCCAACAAAAAT
* *
1421928 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAATTTTAAAAAATCCCGA
707 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAAT-CCGA
* **
1421992 ACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
771 ACCGCAAAAAGGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* ** *
1422057 GAAGG-TTAAGGGACCATTATATGAATTTACAAGAAATAAAAATGGCATTGGCACGCAGAAGTAT
836 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
1422121 G
901 G
* * * *
1422122 AAGATGTGCC-AAAACCACCTACCACCCTATCGATCCACAGCTTGCGAATCCCGTCTCTCTGGTC
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
1422186 GGCGTAGTGCCCGCCCGCCCGTCCGCCCGTCCGCCCGCCTGCTCTTTTCGTCGGTTGGCTTAGGC
66 GACGTAGT----GCCCGCCCGTCCG--C-T-CG--C-CC-GCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * * * *
1422251 AGACGGAGTTCATTCCAAATCTAAGACCAGACCAGACCAGACCAAGGGTTGTGGCAACAGGATCG
119 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CTG----AGGGTTGCGGCAGCAGGATAG
* * * * *
1422316 GCAGCACATAGAGGGGGA-CCTAGCTGATCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGA
179 GTAGCACGTAGAGGGGGACCCGA-CCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
1422379 GCGCCCGCACATTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGCATAC
243 GCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAC
* * * *
1422444 GGAGTTCATTCCCAGTCTAAGATC-GAACCCGACCGAGGGTTACGGCAGTACATGTTGGGCTCGA
308 GGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGG
* * * * * *
1422508 GCATGTCCTGGTACCGTATTTTTCTTCAACGGGGCACCATCGTCAGAGCATCGCCTGAGAACCTG
372 GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
* * ** *
1422573 ACCGACGGCATTGGGGTTCCAGCGATCGGGGGGGTTGGGGGGGTGTGCGCACATGATGTGCGATG
437 ACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATG
* * * * *
1422638 GGTGCCGGTGCTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTGGAGAATTCACACCCC
502 GATGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
*
1422703 CTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
566 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * * *
1422768 CACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGTGTTTTTAGGTGATTTTTTTTATGCAT
631 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATGTTTTATGCAT
*
1422833 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCCAAAACTCCATCCGAAAAAATTTT
695 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTT
* * * *
1422898 AAAAAATGCCGAACCACAAAAAGTTTTGAAACTCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
760 AAAAAAT-CCGAACCGCAAAAAGGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
1422963 GAAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
824 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
**
1423028 ACGGTGAAATATG
889 ACGCAGAAATATG
* * *
1423041 AAGATGTGCCTAAACCCACCTACCACGCTATAGATCCACGACTTGCGCATCCCGTCTCTCTGGCC
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * *
1423106 GACGTAGTGCCCG--C--CCG-T---CCGCTCGTTCCGTTGGTTGGCTTGGGCATACGGAGTTCA
66 GACGTAGTGCCCGCCCGTCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ** * * * *
1423163 TTCCCAGTCTAAGATCGGACTGGA-TCGAGGGTTGCGGTAGCAGGATCAGCT-GCATGCAGAGGG
131 TTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGAT-AGGTAGCACGTAGAGGG
* ** * *
1423226 GGACCCGACCAATCCCTGGCTCGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACACTCGT
194 GGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGT
* * *
1423291 TTCGTGTGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAA
259 TTCGTGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * *
1423355 TCTAAGATCAAATCAGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCA
323 TCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * * * *
1423420 TATTTTTCATCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACTTTATCGGCGGCATTGGGG
388 CATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
* * * * *
1423485 TTCGGGCGATCAAGGGGGCCGGGGCGGTGTACGCACATGATGTGTGATGGGTGCTGGTACTTGGC
453 TTCCGGCGATCGAGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGATGCTGGTACTTGGC
* *
1423550 CCTTATATTGGCCCCATATCCCTCATCGAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
518 CCTTATATTGGCCCC-TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * * *
1423615 GATTCTACAAGTTTGCTGCCAGTAGCGATTAAAGTGTCTGGAATGGAGACACTTTTTTCAAATGG
582 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
1423680 TGACCAAATCTTGTACACTTCGAGTGTTTAGCTGAATGTTTTATGCATGCCAACAAAAATACAAG
647 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTATGCATGCCAACAAAAATACAAG
* * *
1423745 GATTACGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAAAATTTTAAAAAATCTCGAACCGT
712 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATC-CGAACCGC
* * *
1423810 AAAAAGGTTTGAAAATAAAGAAAAA-AGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
776 AAAAAGGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
1423874 GTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
841 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * *
1423935 AAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGTATCCCATCTCTCTGG-C
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
1423999 GACGTAGTGCCAGCCCATCCGCTCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCA
66 GACGTAGTGCCCGCCCGTCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
** *
1424064 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTGGGATTGGTAGCACGTAGAGGGGG
131 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATAGGTAGCACGTAGAGGGGG
* * * * * *
1424129 ACCCGACCGATCCCCAGCTTGCACATCCCACCGCTCTTGCCGGCTGAGCGCCCGCACGCTCGTGT
196 ACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTT
* * *
1424194 CATGGGTTGACTTTGGCATACGAAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
261 CGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * *
1424259 AAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCAGGCATGTGTTGGTGCCGCAT
326 AAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * *
1424324 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTT
391 TTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTC
** * ** * *
1424389 CTACGATCG-GGGTGGTCGGGGGGTGTGTA--CACATGATGTATGATTGATG-TGGGTACCTGGC
456 CGGCGATCGAGGG-GGCCGGGGGG-GTGTACGCACATGATGTGCGATGGATGCT-GGTACTTGGC
* *
1424450 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGAACATTTGA
518 CCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
1424515 GATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCT-AAACTGGGGACACTTTTTTGAAATG
582 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATG
* * **
1424579 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGAATAACAACAAAAATACA
646 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TGTTTTATGCATGCCAACAAAAATACA
1424644 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCTGAACC
710 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCC-GAACC
*
1424709 GCAAAAAGGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAA
774 GCAAAAAGGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
1424774 GGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
839 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
* * * *
1424837 AAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGTTTACACATCCCGTCTCTCTGGCC
1 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * * * * * *
1424902 GACGTAGTGCCCGCCCGCCCACCCGCACGGTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
66 GACGTAGTGCCCGCCCGTCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
1424967 TTCCCAGTCTAAG
131 TTCCCAGTCTAAG
1424980 CATACAGAGT
Statistics
Matches: 2469, Mismatches: 313, Indels: 134
0.85 0.11 0.05
Matches are distributed among these distances:
884 55 0.02
885 10 0.00
888 5 0.00
890 1 0.00
891 1 0.00
892 2 0.00
893 13 0.01
894 154 0.06
895 147 0.06
896 412 0.17
897 4 0.00
898 2 0.00
899 6 0.00
900 274 0.11
901 433 0.18
902 158 0.06
903 67 0.03
904 173 0.07
905 35 0.01
906 2 0.00
907 2 0.00
908 1 0.00
910 1 0.00
912 4 0.00
914 2 0.00
915 34 0.01
916 9 0.00
917 243 0.10
918 96 0.04
919 69 0.03
920 54 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GACGTAGTGCCCGCCCGTCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATAGGTAGCACGTAGAGGGGG
ACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTT
CGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
TTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTC
CGGCGATCGAGGGGGCCGGGGGGGTGTACGCACATGATGTGCGATGGATGCTGGTACTTGGCCCT
TATATTGGCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTATGCATGCCAACAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCCGAACCGCAAAAA
GGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATG
Found at i:1424983 original size:26 final size:26
Alignment explanation
Indices: 1424953--1425003 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1424943 GTTGACTTAG
*
1424953 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1424979 GCATACAGAGTTCATTCCTAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
1425004 TGATCAAAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1426390 original size:26 final size:26
Alignment explanation
Indices: 1426354--1426404 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
1426344 TGACTTAGAG
1426354 ATACAGAGTTCATTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
1426380 ATACAGAGTTCATTCCCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
1426405 ATCACACCGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:1427247 original size:26 final size:26
Alignment explanation
Indices: 1427217--1427266 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
1427207 GACTTAGGCA
* **
1427217 TACGGAGTTCATTCTGAGTCTAAGTG
1 TACGGAGATCATTCCCAGTCTAAGTG
1427243 TACGGAGATCATTCCCAGTCTAAG
1 TACGGAGATCATTCCCAGTCTAAG
1427267 ATCGGACCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (26 bp):
TACGGAGATCATTCCCAGTCTAAGTG
Found at i:1427759 original size:874 final size:879
Alignment explanation
Indices: 1425318--1430689 Score: 6258
Period size: 873 Copynumber: 6.1 Consensus size: 879
1425308 GAACACGTCT
* *
1425318 ATCAGACCAGATTGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
1 ATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
* * * *
1425383 CTGGCTTGCGCATCCAGCCCCTCTGGTCGACTGAGCGCACGCATGCTCGTTTCATGGGTTGACTT
66 CCGGCTTGCGCATCCAGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
* * * * * *
1425448 AGGCATACGAAGTTCATTCCCAGTCTAAGCATCCGAAGTTCATT-CCAATCTAGGATCGGACCGG
131 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * ** * *
1425512 ACCGAGGGTTGCGGCACCACATGCTAGGCTCGGGCATATGCTGGTGATGCATTTTTCTTCGCCAG
196 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * * * * * *
1425577 GGCACCATCACTGGAGCATCACC-AAAAACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGG
261 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGG
* *
1425641 AGCCGAGCGGGTGTGCACACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCC
326 -GCCG-G-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
1425706 TATCCCTCATCAAACCTTGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
388 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
1425771 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
453 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
1425836 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTTTAACAA
518 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * * * **
1425901 TTTTGGTGCCAAAACACCTTCCGAAAAAATTTTTAAAAATCCCAAACCGCAGAAAGTTTCAAAAA
583 GTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA
* * *
1425966 TCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCCCGTGAAGGCTTAAGGGACCATTG
648 TAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT--AGG--T-AGGGA-C----
*
1426031 TATGAATTTACAAGCCATAAAAATAGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
703 -----ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
* *
1426096 CTACCACCATATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCTGCCCGCC
763 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCGCC
* ** * *
1426161 CGTCCACCCGTTCGTTTCGTCGGTTGGCTTACCCATACGAAGTTCATTCCCAGTCCAAG
824 CG--C-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * ** ** * * ** * *
1426220 ATCGGGCTGGACCAAGGGTTACGGCAGCAGGATCGGCAGCACATAGAGGGGGACCTGAACGATCC
1 ATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
* ** * * *
1426285 CCGGTTTATGCATCCAGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTT
66 CCGGCTTGCGCATCCAGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
* * *
1426350 AGAG-ATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCACACC-
131 AG-GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * *
1426413 GATTCAAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCATC
195 GA-CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * *
1426478 GGGGCACCAAC-TCGTAGCAT--CAGGAGAACCTGA-C--CGGCATTGGGGTTTCGACGAT----
259 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGG
* * *
1426533 TGG-AGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
324 GGGCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
1426597 ATCCCTCATTAAACCTCGAGAACTCACACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCT
389 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
1426662 GCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
454 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
1426727 CTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAG
519 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * ** **
1426792 TTTGGGGACAAAACACCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCGAAAAGTTTCAAAAAT
584 TTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAAT
1426857 CA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT-GG-A-GG-C-TTTACAAGC
649 -AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAGGTAGGGACATTTACAAGC
* * *
1426916 CATAAAAATGGCATTGGCATGTAAAAATATGAAGATGTGTCTAAACCCACCTACCACCGTATCGA
713 CATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
1426981 TCCACGACTTTCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCCGCTCGTTTTGTCG
778 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCTCGTTTCGTCG
*
1427045 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAG
843 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
1427082 ATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCCGGTCGATCT
1 ATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
* * * * *
1427147 TCGCCTTGCGCATCCTGCCCCTCTAGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGACTT
66 CCGGCTTGCGCATCCAGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
** ** * *
1427212 AGGCATACGGAGTTCATTCTGAGTCTAAGTGTACGGAGATCATTCCCAGTCTAAGATCGGACCGG
131 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* ** * * *
1427277 ATCGAGGGTTGCAACAGCACATGCTGGGCTGGGGCATGTGCTGGTGCCACATTTTTCTTCGTCAG
196 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * * *
1427342 GTCACCATCGCCGGAGCATCGCCGGAGAACCTGACCAACGACATTGGGGTTCCGACGTTCGGGGG
261 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGG
* * *
1427407 TGCTGGGGGATGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATCGGCCCCCT
326 -GCCGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* **
1427472 ATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACA-GTTTTTT
389 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
1427536 GCCAGTAGCCATTAAAGTGTCTGTAATGGGGAAACTTTTTTCAAATGATCACAAAATCTTGTACA
454 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * **
1427601 CTTTGAGTTTTTACCTG-ATTTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTATAAA
519 CTTCGAGTTTTTAGCTGAATTT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
**
1427665 GTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA
583 GTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAA
1427730 TAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
648 TAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT--AGG--T-AGGGA-C----
**
1427795 TATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCAC
703 -----ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
* *
1427860 CTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCG-C
763 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * *
1427924 CTGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCTGTCTAAG
828 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * *
1427976 ATCAGACTGGACTGAGGGTTGCGGTAGCAGGACCGACAGCATGCAGAAGGGGACCCGACCGATCC
1 ATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
* * * * * * *
1428041 CCGACTTGCGCATCCTGCCCCTCTGGCCAACTAAGTGCCCACACGCTCGTTTCGTGGGTTGAC-T
66 CCGGCTTGCGCATCCAGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
*
1428105 -----TA--G-G--------CA---T-A-C--A--GAGTTCATTCCCAGTCTAAGATCAGACCAG
131 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * * *
1428145 ACTGAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGAT-GTGCCGCATTTTTCTACGTCGG
196 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
** * * *
1428209 GGCACCATCGCTAGAGCATCGCTGGAGAACCTGACCAACGGCATTGGGGTTCCGACGATC---CG
261 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGG
* *
1428271 G--GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGTCCCCTAT
326 GCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* * * *
1428334 CCATCATCAAACCTTGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
391 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
1428399 CAGTAGCCATTAAAGTGTCTGAAATGGGGACAGTTTTTTCAAATGATCACAAAATCTTGTACACT
456 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * *
1428464 TTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGACCACGTCTACCAAGTT
521 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* ** * *
1428529 TGGGCCCAAAA-ATCCTTTTG-AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATT
586 TGGGGCCAAAACA-CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATA
*
1428592 GTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
650 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT--AGG--T-AGGGA-C------
* * * * * *
1428657 TGAATTTACAATCCATAAAAATAGCATTAGCATGTAGAAAGATGAAGATGTACCTAAACCCACAT
703 ---ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCT
* * * *
1428722 ACCACCCTATCGATCCACGGCCTACGCATCCTGTCTCTCTAGCCGACGTAGTGCCCGCCCGCCCA
765 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CC-
1428787 CTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
828 C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* ** * * * * * *
1428840 ATCAGACCGGACCAAGGGTTGTGGTAGCAAGATCGACAGCACACA-ACGGGGGACCTGGTCGATC
1 ATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGA-GGGGGACCCGATCGATC
* * *
1428904 CCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
65 CCCGGCTTGCGCATCCAGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
* *
1428969 TAGGCGTATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
130 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
**
1429034 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCG
195 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* ** * **
1429099 GGACACCATCATCGGAGCATCGCCGGAGAACCTGACCAGCGACATTAAGGTTCC-AGCGATCGGG
260 GGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGA-CGATC-GG
* * * * *
1429163 GGGGCCGGGGGGTGTGCGCACATGATGTGAGAAGTGTGCTGCTACTTGGCCCTTATATTGGCTCC
323 GGGGCC-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
*
1429228 CTATCCCTCATCAAACCTTGAGAACTCAGC-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
387 CTATCCCTCATCAAACCTCGAGAACTCA-CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
1429292 GCTACCAGCAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT-T
451 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
1429356 CACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGGAC-A
516 -ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA-CGTCTA
** * * * ** *
1429420 CCGTGTTTGGGGCCAAAAAACCTTTCGAAAATATTTTAAAAAATCTTGAACCGTAAAAATTTTTG
579 CCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTG
* * *
1429485 AAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACC
644 AAAATAGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT--AGG--T-AGGGA-C
* * *
1429550 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGCT-TCT-AA
703 ---------ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATG-TGCCTAAA
*
1429613 CCCACATACCACCCTATCGATCCACGGCTTGCGCATCCCG--TC-C--GCC--CG-A-T------
758 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC
* * * *
1429663 ------CGCTCGTTTCAAT-AGTTGGCTTAGGCATACAGAGTTCATTCTCAGTCTAAG
823 CCGCCCCGCTCGTTTC-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
1429714 ATCAGACC-GAATCGAGGGTTGCGGTAGCAGGAAT-GGCAGCACGTAGAAGGGGACCCGA-CTGA
1 ATCAGACCAGACT-GAGGGTTGCGGTAGCAGG-ATCGGCAGCACGCAGAGGGGGACCCGATC-GA
* * * *
1429776 TCCCCGGCTTGCACATCCCA-CCCCTCTGGCTGACTGAGCGCGCGCACGCTTGTTTCATGGGTT-
63 TCCCCGGCTTGCGCAT-CCAGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTG
* * *
1429839 AATTAGGCATGCGGAGTTCATTCCCAGTCTAAGGATACGGAGTTCATTCCCAGTCTAAGATCAGA
127 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * *
1429904 CCGGACCGAGGATTGCGGTAGCACATGCTGGGCTCGGGCATGTGTTGGGGCCGCATTTTTCTTCG
192 CCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* ** *
1429969 TCGGGGCACCATCGCCAGAGCATCGCTAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
257 TCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCG
1430034 AGGGGGCCGGGGGGTGTGCGCACATCG-TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
322 -GGGGGCC-GGGGGTGTGCGCACAT-GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
1430098 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
384 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
1430163 TTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
449 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * *
1430228 GTACTCTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTA
514 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * ** * *
1430293 CCATGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCATAAAAAG-TTTC
579 CCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTG
* *
1430357 AAAAAACGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
644 AAAATA-GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT--AGG--T-AGGGA-
*
1430422 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAA
702 C---------ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA
* * * *
1430487 CCCACCTACCACCCTATCGATTCATGGCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
758 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GC
* *
1430552 CCGCCCGTCCGCCTGCTCGTTTCGTTGGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
819 CCGCCCG-CC-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
1430616 AT-TGA-AATGGACCGAGGGTTGTGGTAGCAGGATCGGTAGCATGCAGAAGGGGACCCGATCGAT
1 ATCAGACCA--GACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGAT
*
1430679 CCCCCGCTTGC
64 CCCCGGCTTGC
1430690 TAGGCTCAGG
Statistics
Matches: 3890, Mismatches: 440, Indels: 280
0.84 0.10 0.06
Matches are distributed among these distances:
860 321 0.08
861 143 0.04
862 272 0.07
863 12 0.00
864 157 0.04
865 13 0.00
866 11 0.00
867 73 0.02
868 80 0.02
870 106 0.03
872 14 0.00
873 579 0.15
874 405 0.10
875 113 0.03
876 2 0.00
877 4 0.00
879 3 0.00
880 1 0.00
881 5 0.00
882 5 0.00
883 2 0.00
884 2 0.00
885 2 0.00
886 2 0.00
887 2 0.00
888 3 0.00
889 1 0.00
890 407 0.10
891 70 0.02
892 1 0.00
893 5 0.00
894 271 0.07
895 3 0.00
896 2 0.00
897 1 0.00
898 306 0.08
899 149 0.04
900 3 0.00
901 14 0.00
902 247 0.06
903 78 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (879 bp):
ATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
CCGGCTTGCGCATCCAGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTT
AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGG
GCCGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATAG
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAGGTAGGGACATTTACAAGCCAT
AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCTCGTTTCGTCGGTT
GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
Found at i:1432253 original size:26 final size:26
Alignment explanation
Indices: 1432223--1432275 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1432213 GTTGTCTTAG
*
1432223 GCATATAGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
* *
1432249 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
1432275 G
1 G
1432276 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:1433394 original size:902 final size:897
Alignment explanation
Indices: 1431352--1433914 Score: 3590
Period size: 902 Copynumber: 2.8 Consensus size: 897
1431342 TTAGGCATAG
* * ** *
1431352 GAGTTCATTCCCAGCCTAAGATCAGACCAGATCGAGGGTTGTGAGAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACG-GAGCACATGCTAGGCTCGGGC
* * * * * *
1431417 ATGTGCTGGTGCCGCATTTTTTTTCGTCGGGGCACCATCGTCAAAGCATCGCCGTAGAACTTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGAC
* * *
1431482 CAGCGGCATTGGGGTTCCGACGATCGGGGGTGCCGGGGGGTGTGCACACATGATGTGCGATTGGT
130 CGGCGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
1431547 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTT
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
1431612 AAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
1431677 TTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTACCTGATTTTTTTTGTGCATGCC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-C
* ** * *
1431742 AAAAAAAAATACAAGGATCATGTCTACCAAGATTGGGGTGAAAAATCCTTCCGAAAAAATTTTAA
388 AAACAAAAATACAAGGATCAAATCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTTAA
1431807 AAATTCCTGAACCGCAAAAAGTTTCAAAAATCATGGAAAATAGAAAACGAGTCGTCTTGCCATGA
453 AAATTCCTGAACCGCAAAAAGTTTCAAAAATCATGGAAAATAGAAAACGAGTCGTCTTGCCATGA
*
1431872 AACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
518 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TGGCAC
** *
1431937 ATTGAAATAAGAAGATGTGCCTAAACCCACCTACCACCC-ATTCGATCCACGGCTTGCGCATCCC
582 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA-TCGATCCACGGCTTGCGCATCCC
* * * * *
1432001 GTCTCTCTGGCCGGCGTAGTCCCCACCCGCCCGCC-CTCCTACTCGTTTTGTCGATTGGCTTAGA
646 GTCTCTCTGGCCGACGTAGTTCCC-GCC-CCCGCCGC-CC-GCTCGTTTTGTCGATTGGCTTAGG
* ** ** * ** *
1432065 CATATGGAGTTTGTTCAAAGTCTAAGATCAGACCGGACCGAGGGTTGTGAAAGCAGGATCGGTAG
707 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATCGATAG
* * * *
1432130 CACACAGAGTGGGACCCGGCCGATCCCTAGCTTGCACATCCCACCTTTCTGGCCGACTGAGCGCC
772 CACACAGAGGGGGACCCGGCAGATCCCCAGCTTACACATCCCACCTTTCTGGCCGACTGAGCGCC
* ** * * * * *
1432195 CGCACGCTCGTTTCGTGGGTTGTCTTAGGCATATAGAGTTCATACCCAGTCTAAGCATACG
837 CGCACGCTCGTTTCATGGGTTGAATTAGGCATAGAGAGTTAATACCCAATCTAACCATACA
* * * * *
1432256 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGTGGGTTTC-GATACACATGCTAGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGA-GCACATGCTAGGCTCGGGC
* *
1432320 ATGTGCTGGTGCCGGATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGAC
* * ** * *
1432385 CGGTGGCATTGGGGTTCCAACGATCGGGGGGCCAAGGGGTGTTCGCACATGATGTGTGATGGGTG
130 CGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * **
1432450 CTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAATGCCCCCTTA
195 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
1432515 AAGAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
1432580 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCGA
325 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAA
* * ** *
1432645 ACAAAAATACAGGGATCAAATCTAACAAGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTTAAAA
390 ACAAAAATACAAGGATCAAATCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTTAAAA
* * *
1432710 ATTCCTAAACCGTAAAAAGTTTCAAAAATCATGGAAAATAGAAAATGAGTCGTCTTGTCC-TGAA
455 ATTCCTGAACCGCAAAAAGTTTCAAAAATCATGGAAAATAGAAAACGAGTCGTCTTG-CCATGAA
1432774 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATCGGCACA
519 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT-GGCACA
* *
1432839 CAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTGCGCATCCTGT
583 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
1432904 CTCTCTGGTCGACGTAGTTCCCGCCCACCTTGCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCAT
648 CTCTCTGGCCGACGTAGTTCCCGCCC-CC--GCCGCCCGCTCGTTTTGTCGATTGGCTTAGGCAT
*
1432969 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGTAGGATCGATAGCAC
710 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATCGATAGCAC
* *
1433034 ACAGAGGGGGACCCAGTCAG-TCCCCGGCTTACACATCTTGCC-CC-TT-TGGCC-AGCTGAGCG
775 ACAGAGGGGGACCC-GGCAGATCCCCAGCTTACACATC---CCACCTTTCTGGCCGA-CTGAGCG
* * *
1433094 CCCGCACGCTCGTTTCATGGGTTGAATTGGGCATACGA-AGTTAATTCCCAATTTAACCATACA
835 CCCGCACGCTCGTTTCATGGGTTGAATTAGGCATA-GAGAGTTAATACCCAATCTAACCATACA
*
1433157 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCACATGCTAGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGG-AGCACATGCTAGGCTCGGGC
** *
1433222 ATGTGCTGGTGCCGCATTTTTCTTCGTCAAGGCACCATCGCCAGAGCATCATCGGAGAACCTGAC
65 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGAC
1433287 CGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
130 CGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *** * * * *
1433352 GTGGTACTTGGCCCTTATATTGGTGGCCTATCCCCCATCAAACTTCAAGAGCTCACACCCCCTTA
195 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
1433417 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCAATTAAAGTGTTTGAAATGGGGACACT
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
1433482 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
325 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAA
* ** *
1433547 ACAAAAATACAAGGATCACATCTACCAAGTTCAGGGTGAAAACTCCTTCTGAAAAAATTTTAAAA
390 ACAAAAATACAAGGATCAAATCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTTAAAA
* * * *
1433612 AATCCTGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAA
455 ATTCCTGAACCGCAAAAAGTTTCAAAAATCATGGAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * **
1433677 CGTCACGTGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCTATAAAAATGGCAATGGCATGC
520 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-ATGGCACAC
* * * *
1433742 AGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATTGATACACGACTTGCGCATCCCGTC
584 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
1433807 TCTCTAGCCGACGTAG-T---GCCCGC-CCGCCCGCTCATTTCGTCGATTGGCCTAGGCATACGG
649 TCTCTGGCCGACGTAGTTCCCGCCCCCGCCGCCCGCTCGTTTTGTCGATTGGCTTAGGCATACGG
* * ** *
1433867 AGTTCATTCCCAGTCTAGGATCGGAGTGAACTGAGGGTTGTGGTAGCA
714 AGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCA
1433915 CATACTAGGG
Statistics
Matches: 1475, Mismatches: 166, Indels: 46
0.87 0.10 0.03
Matches are distributed among these distances:
894 75 0.05
897 1 0.00
898 4 0.00
899 1 0.00
900 6 0.00
901 463 0.31
902 781 0.53
903 106 0.07
904 38 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGAGCACATGCTAGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACC
GGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAA
CAAAAATACAAGGATCAAATCTACCAAGTTTGGGGTGAAAACTCCTTCCGAAAAAATTTTAAAAA
TTCCTGAACCGCAAAAAGTTTCAAAAATCATGGAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATGGCACACAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGACGTAGTTCCCGCCCCCGCCGCCCGCTCGTTTTGTCGATTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTGGTAGCAGGATCGATAGCACACAGAG
GGGGACCCGGCAGATCCCCAGCTTACACATCCCACCTTTCTGGCCGACTGAGCGCCCGCACGCTC
GTTTCATGGGTTGAATTAGGCATAGAGAGTTAATACCCAATCTAACCATACA
Found at i:1434755 original size:26 final size:26
Alignment explanation
Indices: 1434716--1434768 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1434706 GTTAACTTAG
*
1434716 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
1434742 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
1434768 G
1 G
1434769 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:1435646 original size:26 final size:26
Alignment explanation
Indices: 1435616--1435668 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1435606 GTTGACTTAG
*
1435616 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1435642 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1435668 G
1 G
1435669 ATCAGATGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1437436 original size:26 final size:26
Alignment explanation
Indices: 1437400--1437452 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1437390 GTTGACTTAG
1437400 GCATACAGAGTTCACTCCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
* * *
1437426 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCACTCCCAGTCTAA
1437452 G
1 G
1437453 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCACTCCCAGTCTAA
Found at i:1438086 original size:895 final size:890
Alignment explanation
Indices: 1433859--1438190 Score: 5794
Period size: 886 Copynumber: 4.8 Consensus size: 890
1433849 ATTGGCCTAG
* * * * * *
1433859 GCATACGGAGTTCATTCCCAGTCTAGGATCGGAGT-GAACTGAGGGTTGTGGTAGCACATACTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGAACGGAGGGTTGCGGCAGCACATGCT-G
*
1433923 GG-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCAT--TACGGGAGCATCACCGG
64 GGCTCGGGCATGTGCTGGTGCCGCA-TTTTCTTC-TCGGACACCATCGT-C-GGAGCATCACCGG
* *
1433985 AGAACCTGACCGGCGGCATTAGGGTTCCGACGA-TGGGGGGGCCGGGGGGTGTGCGCACATGATG
125 AGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATG
* *
1434049 TGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTCAAGAACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * *
1434114 ACACCCCTTAAAGAGCAATTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAA
255 ACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1434179 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
1434244 GTGCGTGCCAATAAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* ** * * * * * *
1434309 AATTTTAAAAAAT-CTCAAACCAAAAAAAGTTTTAAAAATCGTGGAAGATAGAAAACGGGTTGTC
450 AATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
1434373 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* **
1434438 CATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGAACGGCTTG
579 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
1434503 CGAATCCCGTCTCTCTGG-CGGCGTGGTGCCCCCCCTCCCGCCCGCCCACTCGTTTTGTCGGTTG
644 CGCATCCCGTCTCTCTGGCCGGCGTAGTG--------CCCGCCCGCCCGCTCGTTTCGTCGGTTG
* *
1434567 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGTAGCAGGA
701 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGTAGTACGA
* *
1434632 TC-G--GC-CTC-------GA-CC-A---ATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
766 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCAT-CCGCCCCTCTGGCCGACT
* * * *
1434681 GAGTGCCCGCACGCTAATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
830 GAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
1434742 GCATACGGAATTCATTCCCAGTCTAAGATCAGATCGGA-GCAAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACG-GAGGGTTGCGGCAGCACATGCTGG
* * * ** *
1434806 GCTTGGGCATGTGCTGGTGCCACATATTTCTTCACCGGAGCACCATCACCGGCGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCAT-TTTCTTC-TCGGA-CACCATCGTCGGAGCATCACCGGAG
** * * *
1434871 AACCTGATTGACGGCATTGGGGTTCCGGCGATCGGGGTGGCCGGGGGGGTGTGCGCACATGATGT
127 AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * * * *
1434936 GAGATGGGTGCTGCTACTTGGCCCATATATTGGCCCCCTATCCCGCATCAAACCTCGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
1435001 CAACCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
256 C-ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1435066 TGGGGAC-CTTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTT
320 TGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
1435130 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAA
384 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
1435195 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
449 AAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
1435260 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
1435325 CATTGGCATGCAGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
579 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
1435390 CGCATCTCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGTCCGCTCGTTTCGCCGGTTGGCTT
644 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--CCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
1435455 AGTCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACTGAGGGTTACGGTAGCAGGATCGG
705 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGTAGTACGATCGG
* * * * * *
1435520 CAGCACGCAAAGGAGGACCCGACCGATCCCCGGCTTGTGCATCTCGTCCCTTTGGCCGACTGAGC
770 CAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATC-CGCCCCTCTGGCCGACTGAGC
* * *
1435585 GCCCGCGCGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
1435642 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATGGGACAGAGGGTTGCGGCAGCGCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACGGAGGGTTGCGGCAGCACATGCTGGG
* *
1435707 CTCGGGCATGTGCTGGTGCCAC-TTTT-TTCT------TCATCG--GG-GCATCACCGGAGAACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTCTTCTCGGACACCATCGTCGGAGCATCACCGGAGAACC
* *
1435761 TGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CGAGGGGGTGTGCGCACATGATGTGCGA
131 TGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGA
* * *
1435825 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCACTCATCAAACCTCGAGAACTCACAAC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC-AC
*
1435890 CCCTTAAAGTA-CATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGG
259 CCCTTAAAG-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
1435954 GGACAGTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGCTGAAGTTTTTTGT
323 GGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
1436019 GCATGCCAACAAAAATA-AGAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
387 GCATGCCAACAAAAATACA-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * *
1436083 ATTTTAAAAAATCCTGAATCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTTGTCTT
451 ATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
1436148 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
1436213 TTGGCACGCAAAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACGGCTTGCG
581 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
1436278 AATCCCGTCTCTCTGGTCGGCGTAGTGCCCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCA
646 CATCCCGTCTCTCTGGCCGGCGTAGT-------GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
** * * * * * * *
1436343 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGGCAATAGGATCT
704 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGTAGTACGATCG
* * *
1436408 GCAGCACGCAGAGGGGGACCCAACTGAT-CTACGGCTTGCGCATCCTTCCCCTCTGGCCGACTGA
769 GCAGCACGCAGAGGGGGACCCGACCGATCCT-CGGCTTGCGCATCC-GCCCCTCTGGCCGACTGA
* * * *
1436472 ACGCCCGCACGCTCGTTTCGTGGCTTGACTTAGGCATACATAGTTCATTCCCAGTCTAA
832 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * *
1436531 ACTTACGGAGTTCATTCCCAGTCTAAGATCAGAGC-AGACCGAGGGTTGTGGTAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGA-ACGGAGGGTTGCGGCAGCACATGCTGG
* * * * *
1436595 GCTCAGCCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCA-TTTTCTTC-TC-GGACACCATCGTCGGAGCATCACCGGAG
* * *
1436660 AACCTGACCGACGGCAATGGGGTTCCGGCGA-TCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
127 AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
*
1436724 GCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
1436789 CACCCCCTTAAAGAGCATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
256 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
1436854 TGGGGACACTTTTTTCAAATGGTCACAAAGTCTTGTACACTTCGACTTTTCAGCTGATTTTTTTT
320 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTT
* * *
1436919 TGGGCTTGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
384 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAA
* * * *
1436984 AAAA-TTTAAAAAAT-CTCAAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCA
448 AAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
1437047 TCTTGCCATGAAACTTCACGTGAA-GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
512 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
1437111 GGCATTTGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACGGCT
577 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
1437176 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAG
642 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
1437241 ACATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-TCGAGTGTTGTGGTAGTACGATCGGC
707 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTATGGTAGTACGATCGGC
* * * * * *
1437305 AGCATGCAGAGGGGGACTCGACCGATCCTCGGCTTACGCATCCGACCCCTCTGGCTGGCTGAGCA
771 AGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCG-CCCCTCTGGCCGACTGAGCG
* *
1437370 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCACTCCCAGTCTAA
835 CCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
1437426 GCATACGGAGTTCATTGCCAGTCTAAGATCAGATCGAACGGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACGGAGGGTTGCGGCAGCACATGCTGGG
* **
1437491 CCCGGGCATGTGCTGGTGCCGCATTTTCTTCGTCAGGACACCATCGTCGGAGCATCGTCGGAGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTCTTC-TC-GGACACCATCGTCGGAGCATCACCGGAGAA
* * *
1437556 CCTAACTGACGGCATTGGGGTTCCGATGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
129 CCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
1437621 ATGGGTGCTGGCT-CTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
194 ATGGGTGCTGG-TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * *
1437685 CCTTCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
258 CC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
1437750 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTAT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
1437815 GCATGCCAAAAACAAATACAAGGATCACGTCTACCAAGTTT-GGGCGCAAATCTCCTTGCAAAAA
387 GCATGCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTCCAAAAA
* *
1437879 AATTTTAAAAAATCCTGAACCGTAAAATGTTTCAAAAATCATGAAAAATTA-AAAACGAGTCGTC
450 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAA-TAGAAAACGAGTCGTC
1437943 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CATTAAAAATG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAATG
*
1438007 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTT
578 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * **
1438072 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCAGCCTGCCTGCCCACCCGATTATTTCGTCCATT
643 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C--CC-GCCCGCCCGCTCG----TTTCGTCGGTT
* * * * *
1438137 CGCTTAGCCATACGGAGTTCATTCCCACTCTAAGATCAGATCGGACAGAGGGTT
700 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTT
1438191 GGGGCAGCAC
Statistics
Matches: 3045, Mismatches: 309, Indels: 170
0.86 0.09 0.05
Matches are distributed among these distances:
880 8 0.00
882 6 0.00
883 79 0.03
884 126 0.04
885 161 0.05
886 446 0.15
887 372 0.12
888 14 0.00
889 250 0.08
891 5 0.00
892 3 0.00
893 40 0.01
894 366 0.12
895 407 0.13
896 6 0.00
897 4 0.00
898 5 0.00
899 12 0.00
900 168 0.06
902 183 0.06
903 375 0.12
904 9 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACGGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTCTTCTCGGACACCATCGTCGGAGCATCACCGGAGAACC
TGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
AAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTATGGTAGTACGATCGGCAGCACGCAGA
GGGGGACCCGACCGATCCTCGGCTTGCGCATCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
ATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:1438973 original size:26 final size:26
Alignment explanation
Indices: 1438925--1438981 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 26
1438915 TGAGTTAGGC
* **
1438925 ATACGGAGTTTATTCCCTGTCTAAGT
1 ATACGGAGTTCATTCCCAATCTAAGT
*
1438951 ATACGTAGTTCATTCCCAATCTAA-T
1 ATACGGAGTTCATTCCCAATCTAAGT
1438976 AT-CGGA
1 ATACGGA
1438982 TCAGACCGAG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 3 0.12
25 3 0.12
26 20 0.77
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGT
Found at i:1439856 original size:26 final size:26
Alignment explanation
Indices: 1439820--1439872 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1439810 GTTGAGTTAG
* *
1439820 GCATACGGAGTTCATTCTCGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1439846 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1439872 G
1 G
1439873 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1440306 original size:890 final size:891
Alignment explanation
Indices: 1438435--1440958 Score: 3645
Period size: 890 Copynumber: 2.8 Consensus size: 891
1438425 TTTATAGGTT
* *
1438435 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAACA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
*
1438500 ATTTTAAAAAATCCTGAACTGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
66 ATTTTAAAAAATCCTGAAC-GCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
1438565 GCCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA-CCAATAAAAATGGC
130 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-ATAAAAATGGC
* *
1438629 ATTGGCATGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
194 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGC
* * *
1438694 GCATCCCGTCTATCTGGCCGGCGTAGTTCCCGCCCGCCCGACCGCCCGCTCGTTTCGTTGGTTGG
259 GCATCCCGTCTCTCTGGCCGACGTAG-T--CGCCCG-CCG-CCGCCCGCTCGTTTCGTCGGTTGG
* * **
1438759 CTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCTA-CAATAGGA
319 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-AGCAGCAGGA
** * * * *
1438823 TCGGTAGCACACAGAGGGGGACCCGGTTGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACT
383 TCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* * * *
1438888 GAGCGCTCGCATGCTCATTTCATGGGTTGAGTTAGGCATACGGAGTTTATTCCCTGTCTAAGTAT
448 GAGCGCTCGCATGCTCGTTTCATGGGTTGAGTTAGGCATACGGAGTTCATT-CCAGTCTAAGCAT
* * * *
1438953 ACGTAGTTCATTCCCAATCTAATATCGGATCAGACCGAGGGTTGCCGCAGCACATGCTAGGCTC-
512 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGC--CACATGCTAGGCTCG
1439017 AGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGTACCATCCATCGTCGGAGCATTGCCGGAG
575 A-GCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG---CA-CCATCGTCGGAGCATT--CGGAG
* *
1439082 AACCTGATCGGCGGCATTGGGGTTTCGATGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
633 AACCTGACCGGCGGCATTGGGGTTTCGGTGAT--GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* **
1439146 GCGATGGATGCTGGTACTTGGTGCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
696 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
1439211 CACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCAGCCAGTAGCAATTAAAGTGTCTGAAA
761 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCAATTAAAGTGTCTGAAA
* *
1439276 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
826 TGGGGACACTTGTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTT
*
1439341 T
891 C
*
1439342 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAATA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* *
1439407 ATTTTAAAAAATCCTGAAACACAAAAAGTTTTGAAAATCATAAAAAATAGAAAACGAGTCGTCTT
66 ATTTTAAAAAATCCTG-AACGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
1439472 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
130 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
1439537 TTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCATATCGATCCACGGCCTGTG
195 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCG
* *
1439601 CATCCCGTCTCTTTGGCCGACGTAGT-GCCCG-C-CCGCCCGCTCGTTTCGTCGGTTGGCTTAAG
260 CATCCCGTCTCTCTGGCCGACGTAGTCGCCCGCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* *
1439663 CATACAAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAG
325 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAG
* * *
1439728 CACGCAGAGGGGGACCCGACCAATCCCCGGCTTACGCATCCCGCCCCTCTGGCC-AGCTGAGCGC
390 CACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA-CTGAGCGC
** *
1439792 TCGTTTGCTCGTTTC-TGGGTTGAGTTAGGCATACGGAGTTCATTCTCGGTCTAAGCATACGGAG
454 TCGCATGCTCGTTTCATGGGTTGAGTTAGGCATACGGAGTTCATTC-CAGTCTAAGCATACGGAG
*
1439856 TTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCCACGATGCTGGGCTCGAGCATGT
518 TTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCCAC-ATGCTAGGCTCGAGCATGT
* ** *
1439921 GCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATTGTCAAAGCATCATCGGAGAACCTGACCGGT
582 GCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT--TCGGAGAACCTGACCGGC
*
1439986 GGCATTGGGGTTTCGGTGAT-GGGGGCCGGGAGGGGTGTACGCACATGATGTGCGATGGGTGCTG
645 GGCATTGGGGTTTCGGTGATGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
1440050 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGATCTCACACCCCTTTAAA-
709 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
1440114 AGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTGT
774 AGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTGT
*
1440179 TTCAAATGGTCACAAAATCTTGTAGACTTTGAGTTTTTAGCTGAATTGTTTTC
839 TTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTC
*
1440232 TGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
1 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * *
1440297 ATTTTAAAAAATCCTGGAACGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGGGTCGTCTT
66 ATTTTAAAAAATCCT-GAACGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
1440362 GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
130 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
1440427 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGACTTGCA
195 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCG
* *
1440492 CATCCCGTCTCTCTGGCCGACGTA-TCGCCCGCCCGCCTGCCCGCTCGTTTCATCAGTTGGCTTA
260 CATCCCGTCTCTCTGGCCGACGTAGTCGCCCG-CCGCC-GCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * *
1440556 GGCGTACGGAGTTGATTCCCAGTCTTAGATTGGACCAGACCGAGGGTTGCAGTAGCAGGATCGAC
323 GGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGAC
* * *
1440621 AGCACGCAGAGGGGGACCC-AGTCGATCACCGACTTGCGCATCCCACCCCTCTGGCCGACTGAGC
388 AGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* * ** *
1440685 ACCCGCACCCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGCATACGG
452 GCTCGCATGCTCGTTTCATGGGTTGAGTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATACGG
* * * * * *
1440750 AGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGTTTACGGTAGCACATGCTCGGCTCGCGCA
516 AGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGG--CCACATGCTAGGCTCGAGCA
** ** *
1440815 TGTGCTGGTGTCGCATTTTTCTTTTTTCGGGGTGCCATCGCCGGAGCATTGCAGGAGAACCTGAC
579 TGTGCTGGTGTCGCATTTTTC-TTCGTCGGGGCACCATCGTCGGAGCATT-C-GGAGAACCTGAC
* * ** * * *
1440880 CGACGGGATTGGGGTTTCGGCCATTGGGGAGGCCGAGGGGGTGTGCGTACAGGATGTGCGATGGG
641 CGGCGGCATTGGGGTTTCGGTGA-TGGGG-GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
*
1440945 CGCTGGTACTTGGC
704 TGCTGGTACTTGGC
1440959 TCGCATACGG
Statistics
Matches: 1463, Mismatches: 124, Indels: 67
0.88 0.07 0.04
Matches are distributed among these distances:
889 7 0.00
890 330 0.23
891 147 0.10
892 46 0.03
893 3 0.00
894 4 0.00
895 148 0.10
896 130 0.09
897 121 0.08
898 203 0.14
899 1 0.00
900 42 0.03
901 6 0.00
902 5 0.00
905 1 0.00
906 51 0.03
907 213 0.15
908 5 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (891 bp):
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
ATTTTAAAAAATCCTGAACGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTCGCCCGCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGC
ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCTC
GCATGCTCGTTTCATGGGTTGAGTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACGGAGTTC
ATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCCACATGCTAGGCTCGAGCATGTGCTG
GTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTCGGAGAACCTGACCGGCGGCATT
GGGGTTTCGGTGATGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCAGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTGTTTCAAAT
GGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTC
Found at i:1440746 original size:26 final size:26
Alignment explanation
Indices: 1440716--1440768 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1440706 GTTGACTTAG
1440716 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
*
1440742 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
1440768 G
1 G
1440769 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:1441165 original size:240 final size:245
Alignment explanation
Indices: 1440716--1441198 Score: 602
Period size: 240 Copynumber: 2.0 Consensus size: 245
1440706 GTTGACTTAG
* * *
1440716 GCATACGGAGTTCATTACCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGAC
1 GCATACGGAGTTCATTACCAGTCTAAGCATACGAAGATCATTCCCAATCTAAGATCGGATCGGAC
* * * **
1440781 CGAGGTTTACGGTAGCACATGCTCGGCTCGCGCATGTGCTGGTGTCGCATTTTTCTTTTTTCGGG
66 CGAGGGTTACAGTAACACATGCTCGGCTCGCGCATGTGCTGGTGTCGCATTTTTCTTTCGTCGGG
** * ** * **
1440846 GTGCCATCGCCGGAGCATTGCAGGAGAACCTGACCGACGGGATTGGGGTTTCGGCCATTGGGGAG
131 GCACCATCGCCAGAGCATTGCAGGAGAACCTGACCGACGACATTGGGGTTTCGACCACCGGGGAG
* *
1440911 GCCGAGGGGGTGTGCGTACAGGATGTGCGATGGGCGCTGGTACTTGGCTC
196 GCCGAGGGGGTGTGCGCACAGAATGTGCGATGGGCGCTGGTACTTGGCTC
*
1440961 GCATACGGAGTTCATT-CCTAGTCTAAGCATAC-AAGATCATTCCTAATCTAAGATC-GACTCGG
1 GCATACGGAGTTCATTACC-AGTCTAAGCATACGAAGATCATTCCCAATCTAAGATCGGA-TCGG
* * *
1441023 ACCGAGGGTTACAGTAATACATGCTGGGCTCGGGCATGTGCTGGTG-C-CA-TTTTC-TTCGTCG
64 ACCGAGGGTTACAGTAACACATGCTCGGCTCGCGCATGTGCTGGTGTCGCATTTTTCTTTCGTCG
* * **
1441084 GGGCACCATTGCCAGAGCATTGCTGGAGAACCTGACCGACGACATTGGGGTTTCGATGACCGGGG
129 GGGCACCATCGCCAGAGCATTGCAGGAGAACCTGACCGACGACATTGGGGTTTCGACCACCGGGG
* * * * * * *
1441149 GGGTCGGGGGGGTGTGCGCACATAATGTGTGATGGGTGCTGTTACTTGGC
194 AGGCCGAGGGGGTGTGCGCACAGAATGTGCGATGGGCGCTGGTACTTGGC
1441199 CCTTATATTG
Statistics
Matches: 203, Mismatches: 33, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
240 99 0.49
241 5 0.02
242 2 0.01
243 3 0.01
244 65 0.32
245 29 0.14
ACGTcount: A:0.19, C:0.22, G:0.33, T:0.25
Consensus pattern (245 bp):
GCATACGGAGTTCATTACCAGTCTAAGCATACGAAGATCATTCCCAATCTAAGATCGGATCGGAC
CGAGGGTTACAGTAACACATGCTCGGCTCGCGCATGTGCTGGTGTCGCATTTTTCTTTCGTCGGG
GCACCATCGCCAGAGCATTGCAGGAGAACCTGACCGACGACATTGGGGTTTCGACCACCGGGGAG
GCCGAGGGGGTGTGCGCACAGAATGTGCGATGGGCGCTGGTACTTGGCTC
Done.