Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 86 of 129
Found at i:13751882 original size:118 final size:117
Alignment explanation
Indices: 13751673--13752187 Score: 800
Period size: 118 Copynumber: 4.4 Consensus size: 117
13751663 TCTTGTGTAG
**
13751673 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTAGAAATTTTGAACTTC-AAGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTA-AAATTTTGATTTTCAAAG-AA
*
13751737 AATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTGAAAATTTTTTTTTTAA
64 AATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTGAAAA-TTTATTTTTAA
* *
13751792 GGAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTAAAATTTTGATTTTCAAAGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTAAAATTTTGATTTTCAAAGAAAA
* * * *
13751857 TTGATACTTTCAAATTTTCCTCAAAAGTCTTTTTTTTGAAAATTTACTTTTAA
66 TTGATACTTTCAACTTTTCCTCAAAAATC-CTTTTTTGAAAATTTATTTTTAA
* * *
13751910 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGAAAATTTTGATTTTCAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTAAAATTTTGATTTTCAAAGAAAA
*
13751975 TTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTGAAAATTTATTTTTAA
66 TTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTGAAAATTTATTTTTAA
* * *
13752027 GAAAAATTGATACTTTCAACTTTTCTCCAAAAATATTTTTTTTGAAAATTTTGATTTTCAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTT-AAAATTTTGATTTTCAAAGAA
13752092 AATTGATACTTTCAACTTTTCCTCAAAAA-CCTTTTTTTTGAAAATTTATTTTTAA
64 AATTGATACTTTCAACTTTTCCTCAAAAATCC--TTTTTTGAAAATTTATTTTTAA
13752147 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
13752188 GATTTTTATT
Statistics
Matches: 367, Mismatches: 23, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
117 53 0.14
118 148 0.40
119 111 0.30
120 55 0.15
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTAAAATTTTGATTTTCAAAGAAAA
TTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTGAAAATTTATTTTTAA
Found at i:13752095 original size:237 final size:237
Alignment explanation
Indices: 13751673--13752189 Score: 869
Period size: 237 Copynumber: 2.2 Consensus size: 237
13751663 TCTTGTGTAG
*
13751673 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTAGAAATTTTGAACTTCAAGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAGAAATTTTGAACTTCAAGAAAA
* * *
13751738 ATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTGAAAATTTTTTTTTTAAGGAAAATTGAT
66 ATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTGAAAATTTTATTTTTAAGAAAAATTGAT
13751803 ACTTTCAACTTTTTCCTAAAAATATTTTTTTAAAATTTTGATTTTCAAAGAAAATTGATACTTTC
131 ACTTTCAACTTTTTCCTAAAAATATTTTTTTAAAATTTTGATTTTCAAAGAAAATTGATACTTTC
**
13751868 AAATTTTCCTCAAAAGTCTTTTTTTTGAAAATTTACTTTTAA
196 AAATTTTCCTCAAAAACCTTTTTTTTGAAAATTTACTTTTAA
* ** *
13751910 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTGA-AAATTTTGATTTTCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAGAAATTTTGAACTTCAAGAAAA
13751974 ATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTGAAAA-TTTATTTTTAAGAAAAATTGAT
66 ATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTGAAAATTTTATTTTTAAGAAAAATTGAT
*
13752038 ACTTTCAACTTTTCTCC-AAAAATATTTTTTTTGAAAATTTTGATTTTCAAGGAAAATTGATACT
131 ACTTTCAACTTTT-TCCTAAAAATA-TTTTTTT-AAAATTTTGATTTTCAAAGAAAATTGATACT
* *
13752102 TTCAACTTTTCCTCAAAAACCTTTTTTTTGAAAATTTATTTTTAA
193 TTCAAATTTTCCTCAAAAACCTTTTTTTTGAAAATTTACTTTTAA
13752147 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGA
13752190 TTTTTATTTA
Statistics
Matches: 263, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
235 40 0.15
236 69 0.26
237 154 0.59
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.44
Consensus pattern (237 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAGAAATTTTGAACTTCAAGAAAA
ATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTGAAAATTTTATTTTTAAGAAAAATTGAT
ACTTTCAACTTTTTCCTAAAAATATTTTTTTAAAATTTTGATTTTCAAAGAAAATTGATACTTTC
AAATTTTCCTCAAAAACCTTTTTTTTGAAAATTTACTTTTAA
Found at i:13752235 original size:16 final size:16
Alignment explanation
Indices: 13752213--13752293 Score: 64
Period size: 15 Copynumber: 5.2 Consensus size: 16
13752203 AAAATAGAAC
13752213 AAAATAAAAG-TCAAAA
1 AAAATAAAAGAT-AAAA
*
13752229 TAAAT-AAAGATAAAA
1 AAAATAAAAGATAAAA
**
13752244 AAAATAAAAGA-AAGT
1 AAAATAAAAGATAAAA
*
13752259 AAAACAAAA-ATAAAA
1 AAAATAAAAGATAAAA
13752274 ATAAGAT-AAAGATAAAA
1 A-AA-ATAAAAGATAAAA
13752291 AAA
1 AAA
13752294 TATTAAATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
14 1 0.02
15 25 0.49
16 17 0.33
17 8 0.16
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.14
Consensus pattern (16 bp):
AAAATAAAAGATAAAA
Found at i:13752249 original size:41 final size:41
Alignment explanation
Indices: 13752198--13752283 Score: 95
Period size: 41 Copynumber: 2.1 Consensus size: 41
13752188 GATTTTTATT
* * *
13752198 TAAAGAAAATAGAACAAAATAAAAGTC-AAAATAAATA-AAGA
1 TAAAAAAAATAAAACAAAATAAAA--CAAAAATAAAAATAAGA
* *
13752239 TAAAAAAAATAAAAGAAAGTAAAACAAAAATAAAAATAAGA
1 TAAAAAAAATAAAACAAAATAAAACAAAAATAAAAATAAGA
13752280 TAAA
1 TAAA
13752284 GATAAAAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
39 1 0.03
40 9 0.24
41 28 0.74
ACGTcount: A:0.74, C:0.03, G:0.08, T:0.14
Consensus pattern (41 bp):
TAAAAAAAATAAAACAAAATAAAACAAAAATAAAAATAAGA
Found at i:13752282 original size:11 final size:10
Alignment explanation
Indices: 13752228--13752283 Score: 53
Period size: 10 Copynumber: 5.5 Consensus size: 10
13752218 AAAAGTCAAA
*
13752228 ATAAATAAAG
1 ATAAAAAAAG
13752238 ATAAAAAAA-
1 ATAAAAAAAG
13752247 ATAAAAGAAAG
1 ATAAAA-AAAG
*
13752258 -TAAAACAAAA
1 ATAAAA-AAAG
13752268 ATAAAAATAAG
1 ATAAAAA-AAG
13752279 ATAAA
1 ATAAA
13752284 GATAAAAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
9 6 0.16
10 20 0.53
11 12 0.32
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.14
Consensus pattern (10 bp):
ATAAAAAAAG
Found at i:13752320 original size:4 final size:4
Alignment explanation
Indices: 13752313--13752357 Score: 54
Period size: 4 Copynumber: 10.8 Consensus size: 4
13752303 AATCTAATCT
* *
13752313 AATA AATAA AATA AATA AATA AATAA AACA AATA AATA AAAA AAT
1 AATA AAT-A AATA AATA AATA AAT-A AATA AATA AATA AATA AAT
13752358 TCCAAAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
4 28 0.80
5 7 0.20
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (4 bp):
AATA
Found at i:13752331 original size:13 final size:13
Alignment explanation
Indices: 13752313--13752357 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
13752303 AATCTAATCT
13752313 AATAAATAAA-ATA
1 AATAAATAAATA-A
13752326 AATAAATAAATAA
1 AATAAATAAATAA
*
13752339 AACAAATAAATAA
1 AATAAATAAATAA
13752352 AA-AAAT
1 AATAAAT
13752358 TCCAAAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 4 0.13
13 25 0.83
14 1 0.03
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (13 bp):
AATAAATAAATAA
Found at i:13752335 original size:17 final size:17
Alignment explanation
Indices: 13752313--13752357 Score: 74
Period size: 17 Copynumber: 2.7 Consensus size: 17
13752303 AATCTAATCT
13752313 AATAAATAAAATAAATA
1 AATAAATAAAATAAATA
*
13752330 AATAAATAAAACAAATA
1 AATAAATAAAATAAATA
13752347 AATAAA-AAAAT
1 AATAAATAAAAT
13752358 TCCAAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
16 4 0.15
17 22 0.85
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (17 bp):
AATAAATAAAATAAATA
Found at i:13752339 original size:21 final size:22
Alignment explanation
Indices: 13752225--13752357 Score: 78
Period size: 21 Copynumber: 5.8 Consensus size: 22
13752215 AATAAAAGTC
*
13752225 AAAATAAATAAAGATAAAAAAAAT
1 AAAATAAATAAA-AT-AAATAAAT
* *
13752249 AAAAGAAAGTAAAA-CAA-AAAT
1 AAAATAAA-TAAAATAAATAAAT
*
13752270 AAAAATAAGATAAAGATAAAAAAAT
1 -AAAATAA-ATAAA-ATAAATAAAT
** *
13752295 ATTAAATAAATCTAATCTAATAAAT
1 A--AAATAAATAAAAT-AAATAAAT
13752320 AAAATAAAT-AAATAAATAAA-
1 AAAATAAATAAAATAAATAAAT
13752340 ACAAATAAATAAAA-AAAT
1 A-AAATAAATAAAATAAAT
13752358 TCCAAAAAAA
Statistics
Matches: 88, Mismatches: 10, Indels: 25
0.72 0.08 0.20
Matches are distributed among these distances:
20 1 0.01
21 22 0.25
22 18 0.20
23 10 0.11
24 13 0.15
25 18 0.20
26 6 0.07
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.20
Consensus pattern (22 bp):
AAAATAAATAAAATAAATAAAT
Found at i:13753319 original size:11 final size:10
Alignment explanation
Indices: 13753281--13753413 Score: 50
Period size: 10 Copynumber: 13.4 Consensus size: 10
13753271 ATATTACAAG
*
13753281 ATAAAAAATA
1 ATAATAAATA
13753291 ATAATAAATAA
1 ATAATAAAT-A
*
13753302 ATTATAATATA
1 ATAATAA-ATA
13753313 ATAATAAAT-
1 ATAATAAATA
* *
13753322 AT-CTAACTA
1 ATAATAAATA
13753331 TATAA-AAATA
1 -ATAATAAATA
*
13753341 CAT-ATAAAGA
1 -ATAATAAATA
* * *
13753351 TTAACAGA-A
1 ATAATAAATA
13753360 A-AA-AAATA
1 ATAATAAATA
13753368 GATAAATAAATA
1 -AT-AATAAATA
*
13753380 AAAATATACAT-
1 ATAATA-A-ATA
13753391 ATAAT-AATA
1 ATAATAAATA
13753400 ATAATAAATA
1 ATAATAAATA
13753410 ATAA
1 ATAA
13753414 AATACATAAA
Statistics
Matches: 91, Mismatches: 16, Indels: 32
0.65 0.12 0.23
Matches are distributed among these distances:
7 2 0.02
8 9 0.10
9 12 0.13
10 37 0.41
11 22 0.24
12 9 0.10
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (10 bp):
ATAATAAATA
Found at i:13753384 original size:18 final size:17
Alignment explanation
Indices: 13753361--13753415 Score: 60
Period size: 16 Copynumber: 3.2 Consensus size: 17
13753351 TTAACAGAAA
13753361 AAAAATAGATAAATAAAT
1 AAAAATA-ATAAATAAAT
*
13753379 AAAAAT-ATACATATAAT
1 AAAAATAATAAATA-AAT
*
13753396 AATAATAATAAAT-AAT
1 AAAAATAATAAATAAAT
13753412 AAAA
1 AAAA
13753416 TACATAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
16 12 0.39
17 8 0.26
18 11 0.35
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (17 bp):
AAAAATAATAAATAAAT
Found at i:13753435 original size:75 final size:77
Alignment explanation
Indices: 13753278--13753437 Score: 179
Period size: 77 Copynumber: 2.1 Consensus size: 77
13753268 AAAATATTAC
* * * *
13753278 AAGATAAAAAATAATAATAAATAAATTATAATATAATAATAAATATCTAACTATATAAAAATACA
1 AAGAAAAAAAATAATAATAAATAAAATATAATATAATAATAAATATATAAATATATAAAAATACA
*
13753343 TATAAAGATTAA
66 TATAAAGATCAA
*
13753355 CAGAAAAAAAATAGATAAATAAATAAAAATATACATATAATAAT-AATA-ATAAATA-AT-AAAA
1 AAGAAAAAAAATA-AT-AATAAAT-AAAATATA-ATATAATAATAAATATATAAATATATAAAAA
*
13753416 TACATA-AAATA-CAA
62 TACATATAAAGATCAA
13753430 AAGAAAAA
1 AAGAAAAA
13753438 GAAAGAAGAA
Statistics
Matches: 71, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
75 9 0.13
76 4 0.06
77 21 0.30
78 4 0.06
79 12 0.17
80 11 0.15
81 10 0.14
ACGTcount: A:0.68, C:0.04, G:0.03, T:0.25
Consensus pattern (77 bp):
AAGAAAAAAAATAATAATAAATAAAATATAATATAATAATAAATATATAAATATATAAAAATACA
TATAAAGATCAA
Found at i:13756160 original size:58 final size:57
Alignment explanation
Indices: 13756098--13756431 Score: 434
Period size: 58 Copynumber: 5.7 Consensus size: 57
13756088 TTGTGTAGGG
* *
13756098 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAACTTTAATTTCGAGA
1 AAAATTGATACTTTCAAC-TTTTCCCAAAAATATTTTTTTGAAACTTTATTTTCAAGA
* * * * * *
13756156 AAAATTAATACTTTCAACTTTTCCTCAAGAACATTTTTTTGAAATTTTATTTTTAAAA
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTGAAACTTTATTTTCAAGA
* * *
13756214 AAAATTGACACTTTCAACTTTTCTCAAAAAATGTTTTTTTTTGAAACTTTGATTTTCAAGA
1 AAAATTGATACTTTCAACTTTTC-CCAAAAA--TATTTTTTTGAAACTTT-ATTTTCAAGA
* * *
13756275 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAATTTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCC-CAAAAATA-TTTTTTTGAAACTTTATTTTCAAGA
* *
13756334 AAAATTGATACTTTCAACTTTTCCAAAAAATATTTTTTTGAAACTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTGAAACTTT-ATTTTCAAGA
13756392 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1 AAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTT
13756432 TATTTTTATT
Statistics
Matches: 240, Mismatches: 27, Indels: 17
0.85 0.10 0.06
Matches are distributed among these distances:
57 20 0.08
58 106 0.44
59 50 0.21
60 29 0.12
61 35 0.15
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.45
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTGAAACTTTATTTTCAAGA
Found at i:13756413 original size:178 final size:177
Alignment explanation
Indices: 13756098--13756432 Score: 476
Period size: 178 Copynumber: 1.9 Consensus size: 177
13756088 TTGTGTAGGG
*
13756098 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAACTTTAATTTCGAGAAAAATTA
1 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAACTTTAATTTCAAGAAAAATTA
* * * *
13756163 ATACTTTCAACTTTTCCTCAAGAACATTTTTTTGAAATTTTATTTTTAAAAAAAATTGACACTTT
66 ATACTTTCAACTTTTCCTAAAAAACATTTTTTTGAAATTTGATTTTCAAAAAAAATTGACACTTT
* *
13756228 CAACTTTTCTCAAAAAATGTTTTTTTTTGAAACTTTGATTTTCAAGA
131 CAACTTTTCCCAAAAAATATTTTTTTTTGAAACTTTGATTTTCAAGA
* * * *
13756275 AAAATTGATACTTTCAAC-TTTTCCTCAAAAATATTTTTTTTGAAATTTTATTTTTAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTTCC-CAAAAATA-TTTTTTTGAAACTTTAATTTCAAGAAAAAT
* * ** *
13756339 TGATACTTTCAACTTTTCC-AAAAAATATTTTTTTGAAACTTTGATTTTCAAGGAAAATTGATAC
64 TAATACTTTCAACTTTTCCTAAAAAACATTTTTTTGAAA-TTTGATTTTCAAAAAAAATTGACAC
*
13756403 TTTCAACTTTTCCCCAAAAATATTTTTTTT
128 TTTCAACTTTTCCCAAAAAATATTTTTTTT
13756433 ATTTTTATTT
Statistics
Matches: 138, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
176 6 0.04
177 42 0.30
178 90 0.65
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.45
Consensus pattern (177 bp):
AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAACTTTAATTTCAAGAAAAATTA
ATACTTTCAACTTTTCCTAAAAAACATTTTTTTGAAATTTGATTTTCAAAAAAAATTGACACTTT
CAACTTTTCCCAAAAAATATTTTTTTTTGAAACTTTGATTTTCAAGA
Found at i:13756482 original size:11 final size:11
Alignment explanation
Indices: 13756454--13756521 Score: 55
Period size: 11 Copynumber: 5.7 Consensus size: 11
13756444 AAGAAAATAG
13756454 AATAATAAAACAA
1 AATAA-AAAA-AA
13756467 AATAAAAAAAA
1 AATAAAAAAAA
*
13756478 GATAAAAAAGTAA
1 AATAAAAAA--AA
*
13756491 AACAAAAATAAA
1 AATAAAAA-AAA
*
13756503 AATAAAATAAA
1 AATAAAAAAAA
*
13756514 GATAAAAA
1 AATAAAAA
13756522 GAATATTAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
11 19 0.42
12 12 0.27
13 13 0.29
14 1 0.02
ACGTcount: A:0.79, C:0.03, G:0.04, T:0.13
Consensus pattern (11 bp):
AATAAAAAAAA
Found at i:13756503 original size:17 final size:17
Alignment explanation
Indices: 13756465--13756521 Score: 62
Period size: 17 Copynumber: 3.2 Consensus size: 17
13756455 ATAATAAAAC
13756465 AAAATAAAA-AAAAGATAA
1 AAAATAAAACAAAA-AT-A
13756483 AAAAGTAAAACAAAAATA
1 AAAA-TAAAACAAAAATA
* *
13756501 AAAATAAAATAAAGATA
1 AAAATAAAACAAAAATA
13756518 AAAA
1 AAAA
13756522 GAATATTAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
17 15 0.43
18 9 0.26
19 7 0.20
20 4 0.11
ACGTcount: A:0.81, C:0.02, G:0.05, T:0.12
Consensus pattern (17 bp):
AAAATAAAACAAAAATA
Found at i:13757488 original size:23 final size:22
Alignment explanation
Indices: 13757415--13757497 Score: 78
Period size: 23 Copynumber: 3.6 Consensus size: 22
13757405 ATTTTTTAAT
*
13757415 AGATAATTAGAAAAATAATAAT-A
1 AGATAAATA-AAAAA-AATAATAA
* * *
13757438 AGATAAATCAACAATAATATTATA
1 AGATAAAT-AAAAAAAATAATA-A
13757462 AGATAAATAAAAAAAATAATAA
1 AGATAAATAAAAAAAATAATAA
13757484 CAGATAAATAAAAA
1 -AGATAAATAAAAA
13757498 TACATGTAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
22 6 0.12
23 33 0.67
24 10 0.20
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.23
Consensus pattern (22 bp):
AGATAAATAAAAAAAATAATAA
Found at i:13757519 original size:23 final size:22
Alignment explanation
Indices: 13757466--13757631 Score: 70
Period size: 23 Copynumber: 7.1 Consensus size: 22
13757456 ATTATAAGAT
13757466 AAATAAAAA-AAATAATAACAGAT-
1 AAATAAAAATAAA-AATAA-A-ATA
* **
13757489 AAATAAAAATACATGTAAAATA
1 AAATAAAAATAAAAATAAAATA
13757511 AAATGAAAAATAAAAATAAAATAA
1 AAAT-AAAAATAAAAATAAAAT-A
* * **
13757535 AAATATATATATTAAT-AAATA
1 AAATAAAAATAAAAATAAAATA
* *
13757556 GTAATAATAAATAAATAA-ATACATA
1 -AAATAA-AAATAAA-AATA-AAATA
** * *
13757581 GGATATAAAGAAAAATATATACATA
1 AAATAAAAATAAAAATA-A-A-ATA
13757606 AAATATAAAATAAAAATAAAATA
1 AAATA-AAAATAAAAATAAAATA
13757629 AAA
1 AAA
13757632 AGAACAAAAA
Statistics
Matches: 105, Mismatches: 25, Indels: 26
0.67 0.16 0.17
Matches are distributed among these distances:
21 3 0.03
22 15 0.14
23 53 0.50
24 13 0.12
25 11 0.10
26 10 0.10
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.23
Consensus pattern (22 bp):
AAATAAAAATAAAAATAAAATA
Found at i:13757528 original size:18 final size:17
Alignment explanation
Indices: 13757505--13757632 Score: 69
Period size: 18 Copynumber: 6.9 Consensus size: 17
13757495 AAATACATGT
13757505 AAAATAAAATGAAAAATA
1 AAAATAAAAT-AAAAATA
13757523 AAAATAAAATAAAAATA
1 AAAATAAAATAAAAATA
* * * *
13757540 TATATATTAATAAATAGTA
1 AAAATA-AAATAAA-AATA
*
13757559 ATAAT-AAATAAATAAATA
1 AAAATAAAAT-AA-AAATA
* *
13757577 CATAGGATATAAAGAAAAATA
1 -A-A-AATA-AAATAAAAATA
*
13757598 TATACATAAAATATAAAATA
1 -A-AAATAAAATA-AAAATA
13757618 AAAATAAAATAAAAA
1 AAAATAAAATAAAAA
13757633 GAACAAAAAT
Statistics
Matches: 84, Mismatches: 16, Indels: 21
0.69 0.13 0.17
Matches are distributed among these distances:
17 18 0.21
18 30 0.36
19 12 0.14
20 9 0.11
21 10 0.12
22 2 0.02
23 3 0.04
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (17 bp):
AAAATAAAATAAAAATA
Found at i:13757596 original size:25 final size:26
Alignment explanation
Indices: 13757568--13757625 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 26
13757558 AATAATAAAT
**
13757568 AAATAAATACATAGGATAT-AAAGAA
1 AAATAAATACATAAAATATAAAAGAA
* *
13757593 AAATATATACATAAAATATAAAATAA
1 AAATAAATACATAAAATATAAAAGAA
13757619 AAATAAA
1 AAATAAA
13757626 ATAAAAAGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 16 0.59
26 11 0.41
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.22
Consensus pattern (26 bp):
AAATAAATACATAAAATATAAAAGAA
Found at i:13765891 original size:17 final size:17
Alignment explanation
Indices: 13765840--13765909 Score: 61
Period size: 18 Copynumber: 4.1 Consensus size: 17
13765830 TAAGCTATTC
* * *
13765840 ATATTTAAAAAGTTAAA
1 ATATTAAAAAAATTTAA
*
13765857 ATATTAAAAAATTATTAA
1 ATATTAAAAAAAT-TTAA
13765875 ATATTAAAAAAATTT-A
1 ATATTAAAAAAATTTAA
**
13765891 ATAGGAAAAAAATTATAA
1 ATATTAAAAAAATT-TAA
13765909 A
1 A
13765910 AAAACCATAA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
16 13 0.30
17 14 0.32
18 17 0.39
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (17 bp):
ATATTAAAAAAATTTAA
Found at i:13765893 original size:16 final size:16
Alignment explanation
Indices: 13765840--13765905 Score: 60
Period size: 16 Copynumber: 3.9 Consensus size: 16
13765830 TAAGCTATTC
* *
13765840 ATATTTAAAAAGTTAAA
1 ATATTAAAAAAATT-AA
13765857 ATATTAAAAAATTATTAA
1 ATATTAAAAAA--ATTAA
*
13765875 ATATTAAAAAAATTTA
1 ATATTAAAAAAATTAA
**
13765891 ATAGGAAAAAAATTA
1 ATATTAAAAAAATTA
13765906 TAAAAAAACC
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
16 16 0.39
17 10 0.24
18 13 0.32
19 2 0.05
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (16 bp):
ATATTAAAAAAATTAA
Found at i:13772715 original size:25 final size:25
Alignment explanation
Indices: 13772663--13772716 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
13772653 ATATGAAAAA
* **
13772663 TATTTTTATAATTATGATAAGATGG
1 TATTTTCATAATTATGATAAGAAAG
*
13772688 TATTTTCATAATTATGATTAGAAAG
1 TATTTTCATAATTATGATAAGAAAG
13772713 TATT
1 TATT
13772717 AAAGTAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.48
Consensus pattern (25 bp):
TATTTTCATAATTATGATAAGAAAG
Found at i:13775541 original size:26 final size:26
Alignment explanation
Indices: 13775511--13775565 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
13775501 TAATTTTGCT
*
13775511 TAATTATGGTAAAAAGA-GTATTTTAA
1 TAATTAT-GTAAAAAGAGGTATTCTAA
*
13775537 TAATTATGTCAAAAGAGGTATTCTAA
1 TAATTATGTAAAAAGAGGTATTCTAA
13775563 TAA
1 TAA
13775566 ATTTTGTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 8 0.31
26 18 0.69
ACGTcount: A:0.45, C:0.04, G:0.15, T:0.36
Consensus pattern (26 bp):
TAATTATGTAAAAAGAGGTATTCTAA
Found at i:13782755 original size:20 final size:21
Alignment explanation
Indices: 13782717--13782756 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
13782707 GATTAATTTT
* *
13782717 AATTAAAAATATTATATTATA
1 AATTAAAAATAATAAATTATA
13782738 AATTAAAAA-AATAAATTAT
1 AATTAAAAATAATAAATTAT
13782757 GATGCGAAGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
AATTAAAAATAATAAATTATA
Found at i:13783730 original size:25 final size:25
Alignment explanation
Indices: 13783678--13783731 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
13783668 ATATGAAAAA
* **
13783678 TATTTTTATAATTATGATAAGATGG
1 TATTTTCATAATTATGATAAGAAAG
*
13783703 TATTTTCATAATTATGATTAGAAAG
1 TATTTTCATAATTATGATAAGAAAG
13783728 TATT
1 TATT
13783732 AAAGTAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.48
Consensus pattern (25 bp):
TATTTTCATAATTATGATAAGAAAG
Found at i:13783730 original size:86 final size:86
Alignment explanation
Indices: 13783633--13783804 Score: 206
Period size: 86 Copynumber: 2.0 Consensus size: 86
13783623 TCAAAAAATA
* * *
13783633 ATTAAAAAGTATTTTAA-TAATTTAAATC-GATTATAATATGAAAAATATTTTTATAATTATGAT
1 ATTAAAAAGTA-TTAAAGTAATTTAAA-CAAATCATAATATGAAAAATATTTTTATAATTATGAT
*
13783696 AAGATGG-TATTTTCATAATTATG
64 -AGAAGGATATTTTCATAATTATG
* ** ** *
13783719 ATTAGAAAGTATTAAAGTAATTTTGACAAATCATAATATGAAATTTATTTTTGTAATTATGATAG
1 ATTAAAAAGTATTAAAGTAATTTAAACAAATCATAATATGAAAAATATTTTTATAATTATGATAG
13783784 AAGGATATTTTCATAATTATG
66 AAGGATATTTTCATAATTATG
13783805 GTTATAATGA
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
85 10 0.14
86 63 0.86
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.43
Consensus pattern (86 bp):
ATTAAAAAGTATTAAAGTAATTTAAACAAATCATAATATGAAAAATATTTTTATAATTATGATAG
AAGGATATTTTCATAATTATG
Found at i:13786114 original size:28 final size:27
Alignment explanation
Indices: 13785988--13786114 Score: 61
Period size: 27 Copynumber: 4.6 Consensus size: 27
13785978 GAATGGTAGC
* *
13785988 ATGTTTTGTAATGATTTATTAATTAAC--
1 ATGTTTTG-AAT-ATTTATGATTTAACGA
*
13786015 ATGTTTTGATATTTATTTATGATTT-ATGAA
1 ATGTTTTGA-A--TATTTATGATTTAACG-A
* * *
13786045 ATG-TTTGACATAATGATGATTTTAA-AA
1 ATGTTTTGA-ATATTTATGA-TTTAACGA
*
13786072 ATATTTT-AATA-TTATGATTTAACGA
1 ATGTTTTGAATATTTATGATTTAACGA
13786097 ATGTTTTGAATGATTTAT
1 ATGTTTTGAAT-ATTTAT
13786115 ATAATTTGTA
Statistics
Matches: 76, Mismatches: 11, Indels: 25
0.68 0.10 0.22
Matches are distributed among these distances:
24 5 0.07
25 12 0.16
26 7 0.09
27 22 0.29
28 19 0.25
29 8 0.11
30 3 0.04
ACGTcount: A:0.35, C:0.02, G:0.13, T:0.50
Consensus pattern (27 bp):
ATGTTTTGAATATTTATGATTTAACGA
Found at i:13786571 original size:26 final size:26
Alignment explanation
Indices: 13786519--13786573 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
13786509 TAATTTTGCT
*
13786519 TAATTATGGTAAAAAGAGAATTTTAA
1 TAATTATGGTAAAAAGAGAATTATAA
* *
13786545 TAATTAT-GTCAAAAGAGGTATTATAA
1 TAATTATGGTAAAAAGA-GAATTATAA
13786571 TAA
1 TAA
13786574 ATTTTGTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.49, C:0.02, G:0.15, T:0.35
Consensus pattern (26 bp):
TAATTATGGTAAAAAGAGAATTATAA
Found at i:13786889 original size:19 final size:20
Alignment explanation
Indices: 13786857--13786895 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
13786847 TATTAAAAAG
*
13786857 TTAAAATATTAAAAAAATAA
1 TTAAAATATAAAAAAAATAA
13786877 TTAAAA-ATAAAAAAAATAA
1 TTAAAATATAAAAAAAATAA
13786896 AATGACTACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (20 bp):
TTAAAATATAAAAAAAATAA
Found at i:13793933 original size:17 final size:16
Alignment explanation
Indices: 13793883--13793933 Score: 50
Period size: 16 Copynumber: 3.0 Consensus size: 16
13793873 CAAACTATTC
13793883 ATATTAAAAAAGTTAA
1 ATATTAAAAAAGTTAA
*
13793899 A-ATATAAAAAATTATTAA
1 ATAT-TAAAAAA--GTTAA
13793917 ATATTAGAAAAAGTTAA
1 ATATTA-AAAAAGTTAA
13793934 TAGGAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
15 2 0.07
16 8 0.29
17 4 0.14
18 7 0.25
19 7 0.25
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (16 bp):
ATATTAAAAAAGTTAA
Found at i:13794068 original size:11 final size:10
Alignment explanation
Indices: 13794041--13794066 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
13794031 TCAATTATAT
13794041 AAAAAATTAA
1 AAAAAATTAA
13794051 AAAAAATTAA
1 AAAAAATTAA
13794061 AAAAAA
1 AAAAAA
13794067 ATGTTATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAAATTAA
Found at i:13795177 original size:34 final size:34
Alignment explanation
Indices: 13795122--13795189 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
13795112 GAGAAGGTAT
*
13795122 TTTGATAATTATGATTAAAGAG-TATTTTAGTAA
1 TTTGATAATTATAATTAAAGAGATATTTTAGTAA
*
13795155 TTTGATAAATTATAA-TATAAGAGATATTTTTGTAA
1 TTTGAT-AATTATAATTA-AAGAGATATTTTAGTAA
13795190 ATATAATAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 8 0.27
34 12 0.40
35 10 0.33
ACGTcount: A:0.41, C:0.00, G:0.13, T:0.46
Consensus pattern (34 bp):
TTTGATAATTATAATTAAAGAGATATTTTAGTAA
Found at i:13795947 original size:14 final size:14
Alignment explanation
Indices: 13795928--13795954 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
13795918 CACAAAAAGG
13795928 TTTTTTAAAATATA
1 TTTTTTAAAATATA
13795942 TTTTTTAAAATAT
1 TTTTTTAAAATAT
13795955 CATATATACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTTTTAAAATATA
Found at i:13801761 original size:62 final size:61
Alignment explanation
Indices: 13801503--13801826 Score: 293
Period size: 60 Copynumber: 5.5 Consensus size: 61
13801493 AAAAAAATAC
* *
13801503 TTTAAGAAAAAGTTGAAAGTATTAATTTTTCTTGAAAATAAAAAATTTC---AAAAAG-CATT
1 TTTAAGAAAAAGTTGAAAGTATCAATTTTTCTT-AAAA-ATAAAATTTCAAAAAAAAGTCATT
** * ** **
13801562 TTTGTGGAAAAA-TTGAGAG-ATCAATTTTTCTTGGAAATAAAATTAAAAAAAAAAG-CA-T
1 TTT-AAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAAAAAGTCATT
* * * *
13801620 TTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAAGATTTCAAAAAAGA-T-ATT
1 TTTAAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAA-ATTTCAAAAAAAAGTCATT
* * *
13801680 TTTGAGAAAAAGTTGAAAGTATTAATTTTTCTTAAAAATAAATTTTCAATAAAAAAGTCATT
1 TTTAAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAA-AAAAAAGTCATT
* * * *
13801742 TTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTTAAAATAAAAATTT--TAAAAATG-C---
1 TTTAAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAAATTTCAAAAAAAAGTCATT
*
13801798 TTTGAGAAAAAGTTGAAAGTATCAATTTT
1 TTTAAGAAAAAGTTGAAAGTATCAATTTT
13801827 CCTTTTATAA
Statistics
Matches: 219, Mismatches: 33, Indels: 29
0.78 0.12 0.10
Matches are distributed among these distances:
56 34 0.16
57 8 0.04
58 22 0.10
59 43 0.20
60 67 0.31
61 1 0.00
62 38 0.17
63 6 0.03
ACGTcount: A:0.47, C:0.05, G:0.12, T:0.36
Consensus pattern (61 bp):
TTTAAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAAAAAGTCATT
Found at i:13811507 original size:40 final size:38
Alignment explanation
Indices: 13811422--13811523 Score: 141
Period size: 40 Copynumber: 2.6 Consensus size: 38
13811412 GGATGGGGTG
* * *
13811422 GGGAGGGATCGGGTGTGGTGAGGCGTTTGGGGAGAGGT
1 GGGAGGGATTGGGTGTGGTGGGGCGTTTGGGGAAAGGT
13811460 GGAGAGGGATTGGGTGTGGTGGGGCGTTTTGGGGAAAGGT
1 GG-GAGGGATTGGGTGTGGTGGGGCG-TTTGGGGAAAGGT
*
13811500 AGGGAGGGATTTGGTGTGGTGGGG
1 -GGGAGGGATTGGGTGTGGTGGGG
13811524 TGTTATGAGG
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
38 2 0.04
39 21 0.37
40 32 0.56
41 2 0.04
ACGTcount: A:0.14, C:0.03, G:0.60, T:0.24
Consensus pattern (38 bp):
GGGAGGGATTGGGTGTGGTGGGGCGTTTGGGGAAAGGT
Found at i:13815474 original size:6 final size:6
Alignment explanation
Indices: 13815464--13815519 Score: 94
Period size: 6 Copynumber: 9.3 Consensus size: 6
13815454 TAAGTCCAAA
* *
13815464 TGATGA TGATGA TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG
1 TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG TGATGG
13815512 TGATGG TG
1 TGATGG TG
13815520 TGAATTTTGG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 49 1.00
ACGTcount: A:0.20, C:0.00, G:0.46, T:0.34
Consensus pattern (6 bp):
TGATGG
Found at i:13815915 original size:18 final size:18
Alignment explanation
Indices: 13815862--13815986 Score: 89
Period size: 18 Copynumber: 6.9 Consensus size: 18
13815852 TATGGTTATT
*
13815862 ATCCAACTCAAATGTATC
1 ATCCACCTCAAATGTATC
*
13815880 TTCCACCTCCTTAAATGTATC
1 ATCCACCT-C--AAATGTATC
13815901 ATCCACCTCAAATGTATC
1 ATCCACCTCAAATGTATC
**
13815919 ATTTACCAT-AAATGTATCC
1 ATCCACC-TCAAATGTAT-C
* *
13815938 GT-CACCACAAATGTATC
1 ATCCACCTCAAATGTATC
* *
13815955 AT---CCTCAAATATGTC
1 ATCCACCTCAAATGTATC
*
13815970 CTCCACCTCAAATGTAT
1 ATCCACCTCAAATGTAT
13815987 TAAGAACAAA
Statistics
Matches: 83, Mismatches: 15, Indels: 18
0.72 0.13 0.16
Matches are distributed among these distances:
15 11 0.13
17 2 0.02
18 49 0.59
19 4 0.05
20 1 0.01
21 16 0.19
ACGTcount: A:0.33, C:0.30, G:0.06, T:0.31
Consensus pattern (18 bp):
ATCCACCTCAAATGTATC
Found at i:13819855 original size:9 final size:8
Alignment explanation
Indices: 13819797--13819870 Score: 60
Period size: 9 Copynumber: 8.5 Consensus size: 8
13819787 GTTATTTTTG
13819797 TTAATTGA
1 TTAATTGA
13819805 TTGAAATTGA
1 TT--AATTGA
13819815 TTCAA-TGA
1 TT-AATTGA
*
13819823 TTAATTAA
1 TTAATTGA
*
13819831 TTAATTAAA
1 TTAATT-GA
13819840 TTAAATTGA
1 TT-AATTGA
13819849 TTCAATTGA
1 TT-AATTGA
13819858 TTAATTCGA
1 TTAATT-GA
13819867 TTAA
1 TTAA
13819871 AACCGAATTA
Statistics
Matches: 56, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
7 2 0.04
8 19 0.34
9 23 0.41
10 12 0.21
ACGTcount: A:0.42, C:0.04, G:0.09, T:0.45
Consensus pattern (8 bp):
TTAATTGA
Found at i:13831254 original size:25 final size:26
Alignment explanation
Indices: 13831205--13831254 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
13831195 CTCTTGAAAA
**
13831205 TACATAAAAATTTTATTCATTTTAAT
1 TACATAAAAATTTTATTCACCTTAAT
*
13831231 TACATAAAAATTTTGTT-ACCTTAA
1 TACATAAAAATTTTATTCACCTTAA
13831255 CGATTTTCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.42, C:0.10, G:0.02, T:0.46
Consensus pattern (26 bp):
TACATAAAAATTTTATTCACCTTAAT
Found at i:13836858 original size:2 final size:2
Alignment explanation
Indices: 13836851--13836876 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
13836841 TTATCTTATT
13836851 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
13836877 AATGAATAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:13837097 original size:22 final size:21
Alignment explanation
Indices: 13837044--13837099 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 21
13837034 TTGATGTACA
13837044 AGATTATAA-TAT-GATAAGAT
1 AGATTA-AATTATAGATAAGAT
13837064 A-ATATAAGATTATAGATAAGATT
1 AGAT-TAA-ATTATAGATAAGA-T
13837087 AGATTAAATTATA
1 AGATTAAATTATA
13837100 TCATCTTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
19 3 0.10
20 4 0.13
21 3 0.10
22 13 0.43
23 5 0.17
24 2 0.07
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (21 bp):
AGATTAAATTATAGATAAGAT
Found at i:13837405 original size:13 final size:11
Alignment explanation
Indices: 13837385--13837420 Score: 54
Period size: 11 Copynumber: 3.1 Consensus size: 11
13837375 ATATTCAATA
13837385 AACAAATAAAT
1 AACAAATAAAT
13837396 ACATCAAATAAAT
1 A-A-CAAATAAAT
13837409 AACAAATAAAT
1 AACAAATAAAT
13837420 A
1 A
13837421 TAAATTCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 11 0.48
12 2 0.09
13 10 0.43
ACGTcount: A:0.69, C:0.11, G:0.00, T:0.19
Consensus pattern (11 bp):
AACAAATAAAT
Found at i:13838631 original size:34 final size:35
Alignment explanation
Indices: 13838578--13838646 Score: 113
Period size: 34 Copynumber: 2.0 Consensus size: 35
13838568 TAGCATATTC
*
13838578 AAGATTTTTTTTATATTCATTTATAATATATATAT
1 AAGATTTTTTTTATATTCATTCATAATATATATAT
*
13838613 AAGA-TTTTTTTATGTTCATTCATAATATATATAT
1 AAGATTTTTTTTATATTCATTCATAATATATATAT
13838647 TTTTATTGAC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 28 0.88
35 4 0.12
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.55
Consensus pattern (35 bp):
AAGATTTTTTTTATATTCATTCATAATATATATAT
Found at i:13839724 original size:21 final size:21
Alignment explanation
Indices: 13839699--13839738 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
13839689 ATGATAGAAG
*
13839699 TAAAATTAATTATTATAATAA
1 TAAAATTAATTATCATAATAA
*
13839720 TAAAATTGATTATCATAAT
1 TAAAATTAATTATCATAAT
13839739 GATGAGATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (21 bp):
TAAAATTAATTATCATAATAA
Found at i:13839984 original size:56 final size:57
Alignment explanation
Indices: 13839893--13840009 Score: 166
Period size: 56 Copynumber: 2.1 Consensus size: 57
13839883 AGTAATATCT
13839893 AAAATAAATAATTAAAAATTAATAAAAAAATAGTAACAAATCAAATAATATTTTTTA
1 AAAATAAATAATTAAAAATTAATAAAAAAATAGTAACAAATCAAATAATATTTTTTA
* * * * *
13839950 AAAAGTAAATAATTAAACATT-A-AAAAATATAGTAATAAATCGAATGATATTTTTTA
1 AAAA-TAAATAATTAAAAATTAATAAAAAAATAGTAACAAATCAAATAATATTTTTTA
13840006 AAAA
1 AAAA
13840010 CCAATAATAA
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
56 34 0.63
57 5 0.09
58 15 0.28
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (57 bp):
AAAATAAATAATTAAAAATTAATAAAAAAATAGTAACAAATCAAATAATATTTTTTA
Found at i:13845572 original size:5 final size:5
Alignment explanation
Indices: 13845562--13845590 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
13845552 CCCAAACAAA
13845562 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
13845591 AAAGGGACTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:13849355 original size:15 final size:17
Alignment explanation
Indices: 13849335--13849370 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
13849325 TCGGTGATTT
13849335 AAAAAAAG-AA-AAAAA
1 AAAAAAAGCAAGAAAAA
13849350 AAAAAAAGCAAGAAAAA
1 AAAAAAAGCAAGAAAAA
13849367 AAAA
1 AAAA
13849371 TTCTTGTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.42
16 2 0.11
17 9 0.47
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (17 bp):
AAAAAAAGCAAGAAAAA
Found at i:13852457 original size:45 final size:45
Alignment explanation
Indices: 13852362--13852566 Score: 207
Period size: 45 Copynumber: 4.4 Consensus size: 45
13852352 TCTTCTAAGT
* * * * *
13852362 AGAGGCTCAACAA-TTGTAAAAATTCTTGAAAAAAGCTTCACTAACC
1 AGAGGCTCAATAACTT-TAAAAATTCTTG-AAAAAGCTCCTCTCAGC
* *
13852408 AGAGGTTCAATAACTTTAAAAATTCTTGAAAAAGGTCCTCTCAGC
1 AGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTCCTCTCAGC
** *
13852453 AGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGT
1 AGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTCCTCTCAGC
* * *
13852498 AGAGGCTTAATAATTTTAAAAATCACATCCT-AAAAGAGCTCCTCTCAGC
1 AGAGGCTCAATAACTTTAAAAAT----TCTTGAAAA-AGCTCCTCTCAGC
*
13852547 AGAGGCTCAACAACTTTAAA
1 AGAGGCTCAATAACTTTAAA
13852567 GATTTCATCC
Statistics
Matches: 132, Mismatches: 21, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
45 73 0.55
46 23 0.17
47 2 0.02
48 4 0.03
49 30 0.23
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (45 bp):
AGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTCCTCTCAGC
Found at i:13852565 original size:49 final size:47
Alignment explanation
Indices: 13852362--13852609 Score: 159
Period size: 45 Copynumber: 5.3 Consensus size: 47
13852352 TCTTCTAAGT
* * * * *
13852362 AGAGGCTCAACAA-TTGTAAAAAT--TCTTGAAAAAAGCTTCACTAACC
1 AGAGGCTCAACAACTT-TAAAAATCATCCT-AAAAAAGCTCCTCTCAGC
* * * * *
13852408 AGAGGTTCAATAACTTTAAAAAT--TCTTGAAAAAGGTCCTCTCAGC
1 AGAGGCTCAACAACTTTAAAAATCATCCTAAAAAAGCTCCTCTCAGC
* * * ** *
13852453 AGAGGCTCAATAACTTTAAAAAT--TCTTGAAAAAGCTTATCTCAGT
1 AGAGGCTCAACAACTTTAAAAATCATCCTAAAAAAGCTCCTCTCAGC
* * * *
13852498 AGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTCAGC
1 AGAGGCTCAACAACTTTAAAAAT--CATCCTAAAAAAGCTCCTCTCAGC
* * * *
13852547 AGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGC
1 AGAGGCTCAACAACTTTAAA-A-ATCATCCT-AAAAAAGCTCCTCTCAGC
*
13852597 AGAGGCTCCACAA
1 AGAGGCTCAACAA
13852610 TCTTGGAAAA
Statistics
Matches: 164, Mismatches: 30, Indels: 12
0.80 0.15 0.06
Matches are distributed among these distances:
45 73 0.45
46 22 0.13
47 2 0.01
49 39 0.24
50 27 0.16
51 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.27
Consensus pattern (47 bp):
AGAGGCTCAACAACTTTAAAAATCATCCTAAAAAAGCTCCTCTCAGC
Found at i:13852565 original size:94 final size:91
Alignment explanation
Indices: 13852362--13852566 Score: 240
Period size: 94 Copynumber: 2.2 Consensus size: 91
13852352 TCTTCTAAGT
13852362 AGAGGCTCAACAA-TTGTAAAAATTCTTGAAAAAAGCTTCACTAACCAGAGGTTCAATAACTTTA
1 AGAGGCTCAACAACTT-TAAAAATTCTTGAAAAAAGCTTCACTAACCAGAGGTTCAATAACTTTA
* *
13852426 AAAATTCTTGAAAAAGGTCCTCTCAGC
65 AAAATTCCTGAAAAAGCTCCTCTCAGC
* * ** *
13852453 AGAGGCTCAATAACTTTAAAAATTCTTG-AAAAAGCTT-ATCTCAGTAGAGGCTT-AATAATTTT
1 AGAGGCTCAACAACTTTAAAAATTCTTGAAAAAAGCTTCA-CTAACCAGAGG-TTCAATAACTTT
13852515 AAAAATCACATCCT-AAAAGAGCTCCTCTCAGC
64 AAAAAT----TCCTGAAAA-AGCTCCTCTCAGC
13852547 AGAGGCTCAACAACTTTAAA
1 AGAGGCTCAACAACTTTAAA
13852567 GATTTCATCC
Statistics
Matches: 98, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
89 1 0.01
90 31 0.32
91 26 0.27
92 2 0.02
93 4 0.04
94 34 0.35
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (91 bp):
AGAGGCTCAACAACTTTAAAAATTCTTGAAAAAAGCTTCACTAACCAGAGGTTCAATAACTTTAA
AAATTCCTGAAAAAGCTCCTCTCAGC
Found at i:13852872 original size:49 final size:47
Alignment explanation
Indices: 13852757--13852916 Score: 126
Period size: 49 Copynumber: 3.3 Consensus size: 47
13852747 CAAAATTTTA
* * * *
13852757 AGCAGAGGCTCAATAACTTTAAAAAT--TCTTGAAAAAGCTTATCTC
1 AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAAGCTCATCTC
* * * * * *
13852802 AGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTC
1 AGCAGAGGCTCAACAACTTTAAAAAT--CATCCTAAAAAAGCTCATCTC
* * * *
13852851 AGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTA
1 AGCAGAGGCTCAACAACTTTAAA-A-ATCATCCT-AAAAAAGCTCATCTC
*
13852901 AGCAGAGGCTCCACAA
1 AGCAGAGGCTCAACAA
13852917 TCTTGGAAAA
Statistics
Matches: 90, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
45 23 0.26
49 39 0.43
50 27 0.30
51 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (47 bp):
AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAAGCTCATCTC
Found at i:13853485 original size:49 final size:47
Alignment explanation
Indices: 13853370--13853529 Score: 126
Period size: 49 Copynumber: 3.3 Consensus size: 47
13853360 CAAAATTTTA
* * * *
13853370 AGCAGAGGCTCAATAACTTTAAAAAT--TCTTGAAAAAGCTTATCTC
1 AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAAGCTCATCTC
* * * * * *
13853415 AGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTC
1 AGCAGAGGCTCAACAACTTTAAAAAT--CATCCTAAAAAAGCTCATCTC
* * * *
13853464 AGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTA
1 AGCAGAGGCTCAACAACTTTAAA-A-ATCATCCT-AAAAAAGCTCATCTC
*
13853514 AGCAGAGGCTCCACAA
1 AGCAGAGGCTCAACAA
13853530 TCTTGGAAAA
Statistics
Matches: 90, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
45 23 0.26
49 39 0.43
50 27 0.30
51 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (47 bp):
AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAAGCTCATCTC
Found at i:13853791 original size:49 final size:47
Alignment explanation
Indices: 13853676--13853835 Score: 126
Period size: 49 Copynumber: 3.3 Consensus size: 47
13853666 CAAAATTTTA
* * * *
13853676 AGCAGAGGCTCAATAACTTTAAAAAT--TCTTGAAAAAGCTTATCTC
1 AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAAGCTCATCTC
* * * * * *
13853721 AGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTC
1 AGCAGAGGCTCAACAACTTTAAAAAT--CATCCTAAAAAAGCTCATCTC
* * * *
13853770 AGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTA
1 AGCAGAGGCTCAACAACTTTAAA-A-ATCATCCT-AAAAAAGCTCATCTC
*
13853820 AGCAGAGGCTCCACAA
1 AGCAGAGGCTCAACAA
13853836 TCTTGGAAAA
Statistics
Matches: 90, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
45 23 0.26
49 39 0.43
50 27 0.30
51 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (47 bp):
AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAAGCTCATCTC
Found at i:13854096 original size:49 final size:46
Alignment explanation
Indices: 13853981--13854140 Score: 117
Period size: 49 Copynumber: 3.3 Consensus size: 46
13853971 CCAAATTTTA
* * *
13853981 AGCAGAGGCTCAATAACTTTAAAAAT--TCTTGAAAAAGCTTATCTC
1 AGCAGAGGCTCAACAACTTTAAAAATCATCCT-AAAAAGCTCATCTC
* * * * *
13854026 AGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTC
1 AGCAGAGGCTCAACAACTTTAAAAAT--CATCCTAAAA-AGCTCATCTC
* * * *
13854075 AGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAACGCTCTTTTA
1 AGCAGAGGCTCAACAACTTTAAA-A-ATCATCCT-AAAAA-GCTCATCTC
*
13854125 AGCAGAGGCTCCACAA
1 AGCAGAGGCTCAACAA
13854141 TCTTGGAAAA
Statistics
Matches: 91, Mismatches: 15, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
45 23 0.25
48 4 0.04
49 37 0.41
50 26 0.29
51 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (46 bp):
AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAGCTCATCTC
Found at i:13854403 original size:49 final size:47
Alignment explanation
Indices: 13854288--13854447 Score: 126
Period size: 49 Copynumber: 3.3 Consensus size: 47
13854278 CAAAATTTTA
* * * *
13854288 AGCAGAGGCTCAATAACTTTAAAAAT--TCTTGAAAAAGCTTATCTC
1 AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAAGCTCATCTC
* * * * * *
13854333 AGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTC
1 AGCAGAGGCTCAACAACTTTAAAAAT--CATCCTAAAAAAGCTCATCTC
* * * *
13854382 AGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTA
1 AGCAGAGGCTCAACAACTTTAAA-A-ATCATCCT-AAAAAAGCTCATCTC
*
13854432 AGCAGAGGCTCCACAA
1 AGCAGAGGCTCAACAA
13854448 TCTTGGAAAA
Statistics
Matches: 90, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
45 23 0.26
49 39 0.43
50 27 0.30
51 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (47 bp):
AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAAGCTCATCTC
Found at i:13854431 original size:307 final size:307
Alignment explanation
Indices: 13852450--13857048 Score: 9086
Period size: 307 Copynumber: 15.0 Consensus size: 307
13852440 AGGTCCTCTC
13852450 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13852515 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
13852580 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13852645 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13852710 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
13852757 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13852822 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
13852887 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13852952 ACATTAAAATCTCATCCTAG-AAAATTAA-TTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13853015 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
13853062 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13853127 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGGAGGCTCAACAACTTTAAAGATTTCATCCTA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCA-GAGGCTCAACAACTTTAAAGATTTCATCCTA
13853192 AAAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAAC
130 AAAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAAC
13853257 AACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTT
195 AACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTT
13853322 GGAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
260 GGAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
13853370 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13853435 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
13853500 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGG-AAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13853564 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13853629 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
13853676 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13853741 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
13853806 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13853871 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13853936 GAAACCTCTCGTTTGATCATTATC-TTACTCAAAGACC-AAATTTTA
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
13853981 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13854046 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
*
13854111 AAAACGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13854176 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13854241 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
13854288 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13854353 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
13854418 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13854483 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13854548 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
13854595 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13854660 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
*
13854725 AAAACGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13854790 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13854855 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
13854902 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13854967 AAAAATCACATCCT-AAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
13855031 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13855096 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13855161 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
13855208 AGCAGAGGCTCAATAACTTTAAAAATTCTTG-AAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13855272 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
*
13855337 AAAACGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13855402 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13855467 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
13855514 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13855579 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
13855644 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13855709 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13855774 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
13855821 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13855886 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
*
13855951 AAAACGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13856016 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13856081 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
13856128 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13856193 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
13856258 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13856323 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13856388 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
13856435 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13856500 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
*
13856565 AAAATGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13856630 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13856695 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
13856742 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13856807 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
*
13856872 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGAGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13856937 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13857002 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
13857049 TTCTTACCAA
Statistics
Matches: 4273, Mismatches: 11, Indels: 16
0.99 0.00 0.00
Matches are distributed among these distances:
305 518 0.12
306 971 0.23
307 2604 0.61
308 180 0.04
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (307 bp):
AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTA
Found at i:13854461 original size:919 final size:921
Alignment explanation
Indices: 13852450--13857048 Score: 9086
Period size: 919 Copynumber: 5.0 Consensus size: 921
13852440 AGGTCCTCTC
13852450 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13852515 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
13852580 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13852645 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13852710 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACT
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACT
13852775 TTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAA
326 TTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAA
13852840 GAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCA
391 GAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCA
13852905 GAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCT
456 GAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCT
13852970 AG-AAAATTAA-TTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATC
521 AGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATC
13853033 ATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAA
586 ATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAA
13853098 GCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGGA
651 GCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTCAGCA-GA
13853163 GGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTG
715 GGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTG
13853228 GAAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCTAGAAAAATTAATTTTTC
780 GAAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCTAGAAAAATTAATTTTTC
13853293 ATCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATCATTATCTTTACTCAAAG
845 ATCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATCATTATCTTTACTCAAAG
13853358 ACCAAAATTTTA
910 ACCAAAATTTTA
13853370 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13853435 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
13853500 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGG-AAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13853564 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13853629 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACT
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACT
13853694 TTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAA
326 TTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAA
13853759 GAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCA
391 GAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCA
13853824 GAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCT
456 GAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCT
13853889 AGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATC
521 AGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATC
13853954 ATTATC-TTACTCAAAGACC-AAATTTTAAGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAA
586 ATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAA
13854017 GCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAG
651 GCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAG
*
13854082 GCTCAACAACTTTAAAGATTTCATCCTAAAAAACGCTCTTTTAAGCAGAGGCTCCACAATCTTGG
716 GCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGG
13854147 AAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCTAGAAAAATTAATTTTTCA
781 AAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCTAGAAAAATTAATTTTTCA
13854212 TCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATCATTATCTTTACTCAAAGA
846 TCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATCATTATCTTTACTCAAAGA
13854277 CCAAAATTTTA
911 CCAAAATTTTA
13854288 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13854353 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
13854418 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13854483 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13854548 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACT
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACT
13854613 TTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAA
326 TTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAA
*
13854678 GAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAACGCTCTTTTAAGCA
391 GAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCA
13854743 GAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCT
456 GAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCT
13854808 AGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATC
521 AGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATC
13854873 ATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAA
586 ATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAA
13854938 GCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCT-AAAGAGCTCCTCTCAGCAGAG
651 GCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAG
13855002 GCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGG
716 GCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGG
13855067 AAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCTAGAAAAATTAATTTTTCA
781 AAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCTAGAAAAATTAATTTTTCA
13855132 TCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATCATTATCTTTACTCAAAGA
846 TCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATCATTATCTTTACTCAAAGA
13855197 CCAAAATTTTA
911 CCAAAATTTTA
13855208 AGCAGAGGCTCAATAACTTTAAAAATTCTTG-AAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13855272 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
*
13855337 AAAACGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13855402 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13855467 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACT
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACT
13855532 TTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAA
326 TTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAA
13855597 GAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCA
391 GAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCA
13855662 GAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCT
456 GAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCT
13855727 AGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATC
521 AGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATC
13855792 ATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAA
586 ATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAA
13855857 GCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAG
651 GCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAG
*
13855922 GCTCAACAACTTTAAAGATTTCATCCTAAAAAACGCTCTTTTAAGCAGAGGCTCCACAATCTTGG
716 GCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGG
13855987 AAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCTAGAAAAATTAATTTTTCA
781 AAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCTAGAAAAATTAATTTTTCA
13856052 TCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATCATTATCTTTACTCAAAGA
846 TCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATCATTATCTTTACTCAAAGA
13856117 CCAAAATTTTA
911 CCAAAATTTTA
13856128 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
1 AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
13856193 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
66 AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
13856258 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
131 AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
13856323 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
196 ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
13856388 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACT
261 GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACT
13856453 TTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAA
326 TTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAA
*
13856518 GAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAATGCTCTTTTAAGCA
391 GAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCA
13856583 GAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCT
456 GAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCT
13856648 AGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATC
521 AGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATC
13856713 ATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAA
586 ATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAA
13856778 GCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAG
651 GCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAG
13856843 GCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGG
716 GCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGG
*
13856908 AAAAAACTCCTCTAAGCAGAGGCTCAACAACATTAAAATCTCATCCTAGAAAAATTAATTTTTCA
781 AAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCTAGAAAAATTAATTTTTCA
13856973 TCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATCATTATCTTTACTCAAAGA
846 TCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATCATTATCTTTACTCAAAGA
13857038 CCAAAATTTTA
911 CCAAAATTTTA
13857049 TTCTTACCAA
Statistics
Matches: 3662, Mismatches: 10, Indels: 13
0.99 0.00 0.00
Matches are distributed among these distances:
918 374 0.10
919 1543 0.42
920 714 0.19
921 1031 0.28
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (921 bp):
AGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTT
AAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAA
AAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACA
ACATTAAAATCTCATCCTAGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTG
GAAACCTCTCGTTTGATCATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACT
TTAAAAATTCTTGAAAAAGCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAA
GAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCA
GAGGCTCCACAATCTTGGAAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCT
AGAAAAATTAATTTTTCATCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATC
ATTATCTTTACTCAAAGACCAAAATTTTAAGCAGAGGCTCAATAACTTTAAAAATTCTTGAAAAA
GCTTATCTCAGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTCAGCAGAG
GCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTAAGCAGAGGCTCCACAATCTTGG
AAAAAACTCCTCTAAGCAGGGGCTCAACAACATTAAAATCTCATCCTAGAAAAATTAATTTTTCA
TCTTTAAACAAGCAAACCCCTTTCTTTTGGAAACCTCTCGTTTGATCATTATCTTTACTCAAAGA
CCAAAATTTTA
Found at i:13854710 original size:49 final size:46
Alignment explanation
Indices: 13854595--13854754 Score: 117
Period size: 49 Copynumber: 3.3 Consensus size: 46
13854585 CAAAATTTTA
* * *
13854595 AGCAGAGGCTCAATAACTTTAAAAAT--TCTTGAAAAAGCTTATCTC
1 AGCAGAGGCTCAACAACTTTAAAAATCATCCT-AAAAAGCTCATCTC
* * * * *
13854640 AGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTC
1 AGCAGAGGCTCAACAACTTTAAAAAT--CATCCTAAAA-AGCTCATCTC
* * * *
13854689 AGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAACGCTCTTTTA
1 AGCAGAGGCTCAACAACTTTAAA-A-ATCATCCT-AAAAA-GCTCATCTC
*
13854739 AGCAGAGGCTCCACAA
1 AGCAGAGGCTCAACAA
13854755 TCTTGGAAAA
Statistics
Matches: 91, Mismatches: 15, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
45 23 0.25
48 4 0.04
49 37 0.41
50 26 0.29
51 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (46 bp):
AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAGCTCATCTC
Found at i:13855016 original size:48 final size:46
Alignment explanation
Indices: 13854902--13855033 Score: 124
Period size: 48 Copynumber: 2.8 Consensus size: 46
13854892 CAAAATTTTA
* *
13854902 AGCAGAGGCTCAATAACTTTAAAAAT--TCTTGAAAAAGCTTATCTC
1 AGCAGAGGCTCAATAACTTTAAAAATCATCCT-AAAAAGCTCATCTC
* * * * *
13854947 AGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAGAGCTCCTCTC
1 AGCAGAGGCTCAATAACTTTAAAAAT--CATCCTAAAAAGCTCATCTC
* *
13854995 AGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAA
1 AGCAGAGGCTCAATAACTTTAAA-A-ATCATCCTAAAAA
13855034 AAGCTCTTTT
Statistics
Matches: 68, Mismatches: 13, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
45 23 0.34
48 40 0.59
49 4 0.06
50 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (46 bp):
AGCAGAGGCTCAATAACTTTAAAAATCATCCTAAAAAGCTCATCTC
Found at i:13855322 original size:49 final size:46
Alignment explanation
Indices: 13855208--13855366 Score: 115
Period size: 49 Copynumber: 3.3 Consensus size: 46
13855198 CAAAATTTTA
* * * *
13855208 AGCAGAGGCTCAATAACTTTAAAAAT--TCTTGAAAAGCTTATCTC
1 AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAGCTCATCTC
* * * * *
13855252 AGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTC
1 AGCAGAGGCTCAACAACTTTAAAAAT--CATCCTAAAA-AGCTCATCTC
* * * *
13855301 AGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAACGCTCTTTTA
1 AGCAGAGGCTCAACAACTTTAAA-A-ATCATCCT-AAAAA-GCTCATCTC
*
13855351 AGCAGAGGCTCCACAA
1 AGCAGAGGCTCAACAA
13855367 TCTTGGAAAA
Statistics
Matches: 90, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
44 23 0.26
48 6 0.07
49 34 0.38
50 26 0.29
51 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.26
Consensus pattern (46 bp):
AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAGCTCATCTC
Found at i:13855629 original size:49 final size:47
Alignment explanation
Indices: 13855514--13855673 Score: 126
Period size: 49 Copynumber: 3.3 Consensus size: 47
13855504 CAAAATTTTA
* * * *
13855514 AGCAGAGGCTCAATAACTTTAAAAAT--TCTTGAAAAAGCTTATCTC
1 AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAAGCTCATCTC
* * * * * *
13855559 AGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTC
1 AGCAGAGGCTCAACAACTTTAAAAAT--CATCCTAAAAAAGCTCATCTC
* * * *
13855608 AGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTA
1 AGCAGAGGCTCAACAACTTTAAA-A-ATCATCCT-AAAAAAGCTCATCTC
*
13855658 AGCAGAGGCTCCACAA
1 AGCAGAGGCTCAACAA
13855674 TCTTGGAAAA
Statistics
Matches: 90, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
45 23 0.26
49 39 0.43
50 27 0.30
51 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (47 bp):
AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAAGCTCATCTC
Found at i:13855936 original size:49 final size:46
Alignment explanation
Indices: 13855821--13855980 Score: 117
Period size: 49 Copynumber: 3.3 Consensus size: 46
13855811 CAAAATTTTA
* * *
13855821 AGCAGAGGCTCAATAACTTTAAAAAT--TCTTGAAAAAGCTTATCTC
1 AGCAGAGGCTCAACAACTTTAAAAATCATCCT-AAAAAGCTCATCTC
* * * * *
13855866 AGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTC
1 AGCAGAGGCTCAACAACTTTAAAAAT--CATCCTAAAA-AGCTCATCTC
* * * *
13855915 AGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAACGCTCTTTTA
1 AGCAGAGGCTCAACAACTTTAAA-A-ATCATCCT-AAAAA-GCTCATCTC
*
13855965 AGCAGAGGCTCCACAA
1 AGCAGAGGCTCAACAA
13855981 TCTTGGAAAA
Statistics
Matches: 91, Mismatches: 15, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
45 23 0.25
48 4 0.04
49 37 0.41
50 26 0.29
51 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (46 bp):
AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAGCTCATCTC
Found at i:13856243 original size:49 final size:47
Alignment explanation
Indices: 13856128--13856287 Score: 126
Period size: 49 Copynumber: 3.3 Consensus size: 47
13856118 CAAAATTTTA
* * * *
13856128 AGCAGAGGCTCAATAACTTTAAAAAT--TCTTGAAAAAGCTTATCTC
1 AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAAGCTCATCTC
* * * * * *
13856173 AGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTC
1 AGCAGAGGCTCAACAACTTTAAAAAT--CATCCTAAAAAAGCTCATCTC
* * * *
13856222 AGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTA
1 AGCAGAGGCTCAACAACTTTAAA-A-ATCATCCT-AAAAAAGCTCATCTC
*
13856272 AGCAGAGGCTCCACAA
1 AGCAGAGGCTCAACAA
13856288 TCTTGGAAAA
Statistics
Matches: 90, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
45 23 0.26
49 39 0.43
50 27 0.30
51 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (47 bp):
AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAAGCTCATCTC
Found at i:13856550 original size:49 final size:46
Alignment explanation
Indices: 13856435--13856594 Score: 117
Period size: 49 Copynumber: 3.3 Consensus size: 46
13856425 CAAAATTTTA
* * *
13856435 AGCAGAGGCTCAATAACTTTAAAAAT--TCTTGAAAAAGCTTATCTC
1 AGCAGAGGCTCAACAACTTTAAAAATCATCCT-AAAAAGCTCATCTC
* * * * *
13856480 AGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTC
1 AGCAGAGGCTCAACAACTTTAAAAAT--CATCCTAAAA-AGCTCATCTC
* * * *
13856529 AGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAATGCTCTTTTA
1 AGCAGAGGCTCAACAACTTTAAA-A-ATCATCCT-AAAAA-GCTCATCTC
*
13856579 AGCAGAGGCTCCACAA
1 AGCAGAGGCTCAACAA
13856595 TCTTGGAAAA
Statistics
Matches: 91, Mismatches: 15, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
45 23 0.25
48 4 0.04
49 37 0.41
50 26 0.29
51 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.27
Consensus pattern (46 bp):
AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAGCTCATCTC
Found at i:13856857 original size:49 final size:47
Alignment explanation
Indices: 13856742--13856901 Score: 126
Period size: 49 Copynumber: 3.3 Consensus size: 47
13856732 CAAAATTTTA
* * * *
13856742 AGCAGAGGCTCAATAACTTTAAAAAT--TCTTGAAAAAGCTTATCTC
1 AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAAGCTCATCTC
* * * * * *
13856787 AGTAGAGGCTTAATAATTTTAAAAATCACATCCTAAAAGAGCTCCTCTC
1 AGCAGAGGCTCAACAACTTTAAAAAT--CATCCTAAAAAAGCTCATCTC
* * * *
13856836 AGCAGAGGCTCAACAACTTTAAAGATTTCATCCTAAAAAAAGCTCTTTTA
1 AGCAGAGGCTCAACAACTTTAAA-A-ATCATCCT-AAAAAAGCTCATCTC
*
13856886 AGCAGAGGCTCCACAA
1 AGCAGAGGCTCAACAA
13856902 TCTTGGAAAA
Statistics
Matches: 90, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
45 23 0.26
49 39 0.43
50 27 0.30
51 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (47 bp):
AGCAGAGGCTCAACAACTTTAAAAATCATCCTAAAAAAGCTCATCTC
Found at i:13857778 original size:11 final size:11
Alignment explanation
Indices: 13857762--13857789 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
13857752 TAAGTCATTA
13857762 TTTTTTTTCAT
1 TTTTTTTTCAT
13857773 TTTTTTTTCAT
1 TTTTTTTTCAT
13857784 TTTTTT
1 TTTTTT
13857790 AAGTAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.07, C:0.07, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTTTTCAT
Found at i:13862778 original size:123 final size:124
Alignment explanation
Indices: 13862550--13862793 Score: 285
Period size: 123 Copynumber: 2.0 Consensus size: 124
13862540 TATTCAATAG
* * * * *
13862550 AGACATTATGGGACACATATGCTTGATTTAGTACTTTCAGTAAAGCATTATGATGCAACTTTGAG
1 AGACATTATGGGACACA-ATGCTTGATTTAATACTTTCAGTAAAACATTACGATGCAACTCTAAG
** * *
13862615 CTTAGCAATAATGATAATAGTGAAATTCTACCTGACATCTTATTTAACTATTCTATACAA
65 CTTAGCAATAATGATAATAGCAAAATCCTACCTGACATCTTATTCAACTATTCTATACAA
* * ** * **
13862675 AGACATTATGGGACAC-ATGCTTGATTTAATAGTTTTAGTAAAATGTTACGGTGTGACTCTAAGC
1 AGACATTATGGGACACAATGCTTGATTTAATACTTTCAGTAAAACATTACGATGCAACTCTAAGC
* * *
13862739 TTAGCAATAATGATAATAGCAAAATCCTAGCT-AGTATCTTGTTCAACTATTCTAT
66 TTAGCAATAATGATAATAGCAAAATCCTACCTGA-CATCTTATTCAACTATTCTAT
13862794 CATGCTATTC
Statistics
Matches: 99, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
122 1 0.01
123 82 0.83
125 16 0.16
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (124 bp):
AGACATTATGGGACACAATGCTTGATTTAATACTTTCAGTAAAACATTACGATGCAACTCTAAGC
TTAGCAATAATGATAATAGCAAAATCCTACCTGACATCTTATTCAACTATTCTATACAA
Found at i:13870364 original size:20 final size:21
Alignment explanation
Indices: 13870323--13870364 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
13870313 TAAAAAATTC
*
13870323 TCAGATTTTGATGATTTGTTT
1 TCAGATTTTGATGAATTGTTT
13870344 TCAG-TTTTCGATGAATT-TTT
1 TCAGATTTT-GATGAATTGTTT
13870364 T
1 T
13870365 GGTATTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.19, C:0.07, G:0.17, T:0.57
Consensus pattern (21 bp):
TCAGATTTTGATGAATTGTTT
Found at i:13871214 original size:182 final size:186
Alignment explanation
Indices: 13870890--13871241 Score: 429
Period size: 182 Copynumber: 1.9 Consensus size: 186
13870880 TAAGTTTAGA
* ** * *
13870890 AAAAATAATAAAAAATAAAATATTTTTTTAGAATAAATAATAATTATTCAATGATGAAATTTTTA
1 AAAAACAATAAAAAATAAAATA-TTTTTTAGAATAAATAATAATTACCCAATAATGAAATTCTTA
13870955 AAAATTTCAAATAGCAAATTTTTATAAAATTCTTAGATGAAAAATTTTCTCTAAATTTATCCTAA
65 AAAATTTCAAATAGCAAATTTTTATAAAATTCTTAGATGAAAAATTTTCTCTAAATTTATCCTAA
*
13871020 ATTATGAAATAATTTAGATAAAGTTTCAATAATAA-TAATTAATAATTATTTTTAATG
130 ATTATGAAATAATTTAGATAAAATTTCAATAA-AAGTAATTAATAATTATTTTTAATG
* * *
13871077 AAAAACAA-AAAAAATAAAA-A-TTTTTGGAATTAAATATTAATTACCCAATAATGATATTCTTA
1 AAAAACAATAAAAAATAAAATATTTTTTAGAA-TAAATAATAATTACCCAATAATGAAATTCTTA
* * * *
13871139 GAAAA-TTCAAATGGTAAATTTTTA-AGAA-TCTATAGGT-AAGAAA-TTTCTCTAAATTTATAC
65 -AAAATTTCAAATAGCAAATTTTTATAAAATTCT-TAGATGAA-AAATTTTCTCTAAATTTAT-C
*
13871199 C-AAA-TAGTGAAATAATTTAGATAAAATTTTAATAAAAGTAATT
126 CTAAATTA-TGAAATAATTTAGATAAAATTTCAATAAAAGTAATT
13871242 GTATTCTTTT
Statistics
Matches: 144, Mismatches: 14, Indels: 19
0.81 0.08 0.11
Matches are distributed among these distances:
181 4 0.03
182 54 0.38
183 20 0.14
184 43 0.30
185 5 0.03
186 11 0.08
187 7 0.05
ACGTcount: A:0.50, C:0.06, G:0.07, T:0.38
Consensus pattern (186 bp):
AAAAACAATAAAAAATAAAATATTTTTTAGAATAAATAATAATTACCCAATAATGAAATTCTTAA
AAATTTCAAATAGCAAATTTTTATAAAATTCTTAGATGAAAAATTTTCTCTAAATTTATCCTAAA
TTATGAAATAATTTAGATAAAATTTCAATAAAAGTAATTAATAATTATTTTTAATG
Found at i:13875567 original size:21 final size:20
Alignment explanation
Indices: 13875543--13875582 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
13875533 GGGAAAATGA
13875543 AAAAAATAAAAAAAATGAAAG
1 AAAAAAT-AAAAAAATGAAAG
*
13875564 AAAAAATTAAAAAATGAAA
1 AAAAAATAAAAAAATGAAA
13875583 AATGAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.12
Consensus pattern (20 bp):
AAAAAATAAAAAAATGAAAG
Found at i:13875584 original size:9 final size:9
Alignment explanation
Indices: 13875515--13875567 Score: 54
Period size: 9 Copynumber: 5.9 Consensus size: 9
13875505 ATAATGGATG
13875515 GAAAAAAAT
1 GAAAAAAAT
*
13875524 GAAAAAAAA
1 GAAAAAAAT
**
13875533 G-GGAAAAT
1 GAAAAAAAT
13875541 GAAAAAAAT
1 GAAAAAAAT
*
13875550 AAAAAAAAT
1 GAAAAAAAT
13875559 GAAAGAAAA
1 GAAA-AAAA
13875568 AATTAAAAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
8 5 0.15
9 25 0.74
10 4 0.12
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (9 bp):
GAAAAAAAT
Found at i:13876998 original size:44 final size:47
Alignment explanation
Indices: 13876932--13877025 Score: 115
Period size: 44 Copynumber: 2.1 Consensus size: 47
13876922 ATTGTCGAGG
*
13876932 ATTTACTTATTTTCAAAAGTCGTTAAG-CCTCTGTTTAAAGGAGTATT
1 ATTTACTTATTTTCAAAAGTCGTCAAGTCCT-TGTTTAAAGGAGTATT
* * *
13876979 ATTTA-TT-TTTTC-AAAGTCGTCGAGTCGTTGTTTAGAGGAGTATT
1 ATTTACTTATTTTCAAAAGTCGTCAAGTCCTTGTTTAAAGGAGTATT
13877023 ATT
1 ATT
13877026 CATCGAGCCA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
44 28 0.67
45 7 0.17
46 2 0.05
47 5 0.12
ACGTcount: A:0.27, C:0.11, G:0.18, T:0.45
Consensus pattern (47 bp):
ATTTACTTATTTTCAAAAGTCGTCAAGTCCTTGTTTAAAGGAGTATT
Found at i:13877088 original size:44 final size:44
Alignment explanation
Indices: 13877040--13877123 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
13877030 GAGCCATTGT
* **
13877040 TTAGAGGAGCATTA-TTTAGTTTTTGGAAGTCATTGAGCCTTTAC
1 TTAGAGAAGCATTATTTTA-TTTTTCAAAGTCATTGAGCCTTTAC
* *
13877084 TTAGAGAAGCCTTATTTTATTTTTCAAAGTCGTTGAGCCT
1 TTAGAGAAGCATTATTTTATTTTTCAAAGTCATTGAGCCT
13877124 CTGTTTAGAG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 30 0.88
45 4 0.12
ACGTcount: A:0.25, C:0.13, G:0.20, T:0.42
Consensus pattern (44 bp):
TTAGAGAAGCATTATTTTATTTTTCAAAGTCATTGAGCCTTTAC
Found at i:13877132 original size:44 final size:44
Alignment explanation
Indices: 13877037--13877133 Score: 106
Period size: 44 Copynumber: 2.2 Consensus size: 44
13877027 ATCGAGCCAT
* ** *
13877037 TGTTTAGAGGAGCATTATTTAGTTTTTGGAAGTCATTGAGCCTT
1 TGTTTAGAGAAGCATTATTTAGTTTTTCAAAGTCATTGAGCCTC
** * *
13877081 TACTTAGAGAAGCCTTATTTTA-TTTTTCAAAGTCGTTGAGCCTC
1 TGTTTAGAGAAGCATTA-TTTAGTTTTTCAAAGTCATTGAGCCTC
13877125 TGTTTAGAG
1 TGTTTAGAG
13877134 GAATTTTTAT
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
44 38 0.90
45 4 0.10
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.42
Consensus pattern (44 bp):
TGTTTAGAGAAGCATTATTTAGTTTTTCAAAGTCATTGAGCCTC
Found at i:13877178 original size:12 final size:11
Alignment explanation
Indices: 13877161--13877191 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
13877151 AAGTATGCTT
13877161 AAAAAAAACAA
1 AAAAAAAACAA
13877172 AAAAAAAACAA
1 AAAAAAAACAA
13877183 AAAATAAAA
1 AAAA-AAAA
13877192 TAATATGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.79
12 4 0.21
ACGTcount: A:0.90, C:0.06, G:0.00, T:0.03
Consensus pattern (11 bp):
AAAAAAAACAA
Found at i:13878230 original size:24 final size:26
Alignment explanation
Indices: 13878191--13878239 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
13878181 ATAATTATCC
*
13878191 AATGATAAAATTTTTA-GAAATTTTA
1 AATGATAAAATTTTTATAAAATTTTA
13878216 AATGAT-AAATTTTTATAAAATTTT
1 AATGATAAAATTTTTATAAAATTTT
13878240 TAGGTGAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (26 bp):
AATGATAAAATTTTTATAAAATTTTA
Found at i:13878529 original size:183 final size:184
Alignment explanation
Indices: 13878165--13878515 Score: 439
Period size: 184 Copynumber: 1.9 Consensus size: 184
13878155 AAAAAAATAT
* * * *
13878165 TTTTTGAGAATAAATAATAATTATCCAATGATAAAATTTTTAGAAATTTTAAATGATAAATTTTT
1 TTTTTGAGAATAAATAATAATTACCCAATGATAAAATTATTAGAAATTTCAAATGATAAATTTCT
* * * * *
13878230 ATAAAATTTTTAGGTGAGAAATTTTCTCTAAATTTGTCCCAAATTATGGAATAATTTAGATAAAG
66 ATAAAATCTCTAAGTGAGAAATTTTCTCTAAATTTATCCCAAATTATGAAATAATTTAGATAAAG
*
13878295 TTTCAATAATAATAATTAATATTTATTTTCAATAAAAAAATAAAAAATTAAACA
131 TTTCAATAATAATAATTAATATTTATTTCCAATAAAAAAATAAAAAATTAAACA
* * *
13878349 TTTTTG-GAATTAAAT-ATGAATTACCCAATGATGAGATTATTAGAAATTTCAAATGGTAAATTT
1 TTTTTGAGAA-TAAATAAT-AATTACCCAATGATAAAATTATTAGAAATTTCAAATGATAAATTT
*
13878412 CTA-AGAAATCTCTAAGTGAGAAA-TTTCTCTAAATTTATCCCAAATTGTGAAATAATTTAGATG
64 CTATA-AAATCTCTAAGTGAGAAATTTTCTCTAAATTTATCCCAAATTATGAAATAATTTAGAT-
* *
13878475 AAA-TTTTAATAA-AAGTAATT-GTATTCT-TTTCCAAATAAAAA
127 AAAGTTTCAATAATAA-TAATTAATATT-TATTTCC-AATAAAAA
13878516 TTTTTGGAAT
Statistics
Matches: 144, Mismatches: 16, Indels: 15
0.82 0.09 0.09
Matches are distributed among these distances:
182 10 0.07
183 64 0.44
184 70 0.49
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.39
Consensus pattern (184 bp):
TTTTTGAGAATAAATAATAATTACCCAATGATAAAATTATTAGAAATTTCAAATGATAAATTTCT
ATAAAATCTCTAAGTGAGAAATTTTCTCTAAATTTATCCCAAATTATGAAATAATTTAGATAAAG
TTTCAATAATAATAATTAATATTTATTTCCAATAAAAAAATAAAAAATTAAACA
Found at i:13879116 original size:123 final size:123
Alignment explanation
Indices: 13878897--13879145 Score: 480
Period size: 123 Copynumber: 2.0 Consensus size: 123
13878887 TGAGAAAATA
*
13878897 TTTTTAAGCATTCTATCAAATTGATGGAGAATCTTAAAAGTTATTTCTAATATTTAAACATTAAA
1 TTTTTAAGCATTCTATCAAATTGATGAAGAATCTTAAAAGTTATTTCTAATATTTAAACATTAAA
13878962 ATTTAAAACCATTAGAACTAAGACCTTATGATAAATTTAAAATTAAATGGTACCATCC
66 ATTTAAAACCATTAGAACTAAGACCTTATGATAAATTTAAAATTAAATGGTACCATCC
13879020 TTTTTAAGCATTCTATCAAATTGATGAAGAATCTTAAAAGTTATTTCTAATATTTAAACATTAAA
1 TTTTTAAGCATTCTATCAAATTGATGAAGAATCTTAAAAGTTATTTCTAATATTTAAACATTAAA
*
13879085 ATTTAAAACCATTAGAACTAAGACCTTATGATAAATTTAAAATTAAATGGTACTATCC
66 ATTTAAAACCATTAGAACTAAGACCTTATGATAAATTTAAAATTAAATGGTACCATCC
13879143 TTT
1 TTT
13879146 GGGTGGGCAT
Statistics
Matches: 124, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 124 1.00
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (123 bp):
TTTTTAAGCATTCTATCAAATTGATGAAGAATCTTAAAAGTTATTTCTAATATTTAAACATTAAA
ATTTAAAACCATTAGAACTAAGACCTTATGATAAATTTAAAATTAAATGGTACCATCC
Found at i:13887253 original size:153 final size:153
Alignment explanation
Indices: 13886975--13887255 Score: 490
Period size: 153 Copynumber: 1.8 Consensus size: 153
13886965 AGAATTTATG
* *
13886975 TGATCACTTGGATCAAATTAACTTGAGAATCTATCAAAGTTTTAGGTTAAATTTTGTTAGATCGG
1 TGATCACTTGGATCAAATTAACTTGAGAATCTATCAAAGTTTTAGGTCAAATTTTGTTAGATCAG
13887040 ATAGGTGTAAGCTCATTGAGAATAATTTAACTCATGTATTCAAGTACAAAATAAAATATAAGTTT
66 ATAGGTGTAAGCTCATTGAGAATAATTTAACTCATGTATTCAAGTACAAAATAAAATATAAGTTT
13887105 GATCGAATTAACTTAGATTCACA
131 GATCGAATTAACTTAGATTCACA
* * *
13887128 TGATCACTTGGATCAAATTAACTTGAGAGTTTATTAAAGTTTTAGGTCAAATTTTGTTAGATCAG
1 TGATCACTTGGATCAAATTAACTTGAGAATCTATCAAAGTTTTAGGTCAAATTTTGTTAGATCAG
* **
13887193 ATAGGTGTAAGCTCGTTGAGAATAATTTAACTCATGTATTTTAGTACAAAATAAAATATAAGT
66 ATAGGTGTAAGCTCATTGAGAATAATTTAACTCATGTATTCAAGTACAAAATAAAATATAAGT
13887256 GTGAGCTTGG
Statistics
Matches: 120, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
153 120 1.00
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.36
Consensus pattern (153 bp):
TGATCACTTGGATCAAATTAACTTGAGAATCTATCAAAGTTTTAGGTCAAATTTTGTTAGATCAG
ATAGGTGTAAGCTCATTGAGAATAATTTAACTCATGTATTCAAGTACAAAATAAAATATAAGTTT
GATCGAATTAACTTAGATTCACA
Found at i:13893336 original size:18 final size:19
Alignment explanation
Indices: 13893308--13893343 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
13893298 TGATGTGATA
13893308 CTAAGCATGTCAGATCGAT
1 CTAAGCATGTCAGATCGAT
*
13893327 CTAA-CATGTCAGGTCGA
1 CTAAGCATGTCAGATCGA
13893344 CACAAGTGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (19 bp):
CTAAGCATGTCAGATCGAT
Found at i:13894453 original size:30 final size:30
Alignment explanation
Indices: 13894417--13894700 Score: 187
Period size: 30 Copynumber: 8.8 Consensus size: 30
13894407 GTTTCTTGGG
*
13894417 AGGTTCATATACTGGTGGCATTGGTGGCTT
1 AGGTTCATATACTGGTGGCTTTGGTGGCTT
* * *
13894447 AGGTTCAAAAACCGGTGGCTTTGGTGGCTT
1 AGGTTCATATACTGGTGGCTTTGGTGGCTT
* *
13894477 AGGTTCGTATACTGGTGG-TTGGGGTTCTGGCTT
1 AGGTTCATATACTGGTGGCTT-TGG---TGGCTT
* * * *
13894510 TGGTGGCTTAGGT-TTGGGTTCTGGCTTTGGTGGCTT
1 AGGT-TCATA--TACT-GG---TGGCTTTGGTGGCTT
*
13894546 AGGTTCATATAATGGTGGCTTTGGTGGCTT
1 AGGTTCATATACTGGTGGCTTTGGTGGCTT
* *
13894576 AGGTTCATAAACCGGTGGCTTTGGTGGCTT
1 AGGTTCATATACTGGTGGCTTTGGTGGCTT
*
13894606 AGGTTCATATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTT
1 AGGTTCATATAC---TGG--TGGCTT-TGG------TGGCTT
*
13894648 AGGTTCATAAACTGGTGGCTTTGGTGGCTT
1 AGGTTCATATACTGGTGGCTTTGGTGGCTT
* *
13894678 AGGTTCATAAACCGGTGG-TTTGG
1 AGGTTCATATACTGGTGGCTTTGG
13894701 GTTCTGGCTT
Statistics
Matches: 202, Mismatches: 27, Indels: 51
0.72 0.10 0.18
Matches are distributed among these distances:
29 7 0.03
30 118 0.58
33 14 0.07
34 4 0.02
35 9 0.04
36 18 0.09
37 5 0.02
39 8 0.04
40 2 0.01
42 17 0.08
ACGTcount: A:0.14, C:0.13, G:0.36, T:0.38
Consensus pattern (30 bp):
AGGTTCATATACTGGTGGCTTTGGTGGCTT
Found at i:13894520 original size:72 final size:72
Alignment explanation
Indices: 13894432--13894569 Score: 149
Period size: 69 Copynumber: 1.9 Consensus size: 72
13894422 CATATACTGG
* * *
13894432 TGGCATTGGTGGCTTAGGTTCAAAAACCGGTGGCTTTGGTGGCTTAGGTTCGTATACTGGTGGTT
1 TGGCTTTGGTGGCTTAGGTTCATAAACCGGTGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTT
*
13894497 GGGGTTC
66 TGGGTTC
**** *
13894504 TGGCTTTGGTGGCTTAGGTT--TGGGTTC--TGGCTTTGGTGGCTTAGGTTCATATAATGGTGGC
1 TGGCTTTGGTGGCTTAGGTTCAT-AAACCGGTGGCTTTGGTGGCTTAGGTTCATATACTGGTGG-
13894565 TTTGG
64 TTTGG
13894570 TGGCTTAGGT
Statistics
Matches: 55, Mismatches: 9, Indels: 6
0.79 0.13 0.09
Matches are distributed among these distances:
69 31 0.56
70 4 0.07
71 1 0.02
72 19 0.35
ACGTcount: A:0.12, C:0.12, G:0.38, T:0.38
Consensus pattern (72 bp):
TGGCTTTGGTGGCTTAGGTTCATAAACCGGTGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTT
TGGGTTC
Found at i:13894531 original size:27 final size:27
Alignment explanation
Indices: 13894493--13894550 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
13894483 GTATACTGGT
13894493 GGTTGGGGTTCTGGCTTTGGTGGCTTA
1 GGTTGGGGTTCTGGCTTTGGTGGCTTA
*
13894520 GGTTTGGGTTCTGGCTTTGGTGGCTTA
1 GGTTGGGGTTCTGGCTTTGGTGGCTTA
13894547 GGTT
1 GGTT
13894551 CATATAATGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.03, C:0.10, G:0.43, T:0.43
Consensus pattern (27 bp):
GGTTGGGGTTCTGGCTTTGGTGGCTTA
Found at i:13894623 original size:21 final size:21
Alignment explanation
Indices: 13894597--13894668 Score: 67
Period size: 21 Copynumber: 3.4 Consensus size: 21
13894587 CCGGTGGCTT
13894597 TGGTGGCTTAGGTTCATATAC
1 TGGTGGCTTAGGTTCATATAC
* * * *
13894618 TGGTGGTTTGGGTTC-TGGCT-T
1 TGGTGGCTTAGGTTCAT--ATAC
*
13894639 TGGTGGCTTAGGTTCATAAAC
1 TGGTGGCTTAGGTTCATATAC
13894660 TGGTGGCTT
1 TGGTGGCTT
13894669 TGGTGGCTTA
Statistics
Matches: 38, Mismatches: 9, Indels: 8
0.69 0.16 0.15
Matches are distributed among these distances:
20 1 0.03
21 35 0.92
22 2 0.05
ACGTcount: A:0.12, C:0.12, G:0.35, T:0.40
Consensus pattern (21 bp):
TGGTGGCTTAGGTTCATATAC
Found at i:13894641 original size:42 final size:43
Alignment explanation
Indices: 13894591--13894671 Score: 146
Period size: 42 Copynumber: 1.9 Consensus size: 43
13894581 CATAAACCGG
*
13894591 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGG-TTTGGGTTC
1 TGGCTTTGGTGGCTTAGGTTCATAAACTGGTGGCTTTGGGTTC
13894633 TGGCTTTGGTGGCTTAGGTTCATAAACTGGTGGCTTTGG
1 TGGCTTTGGTGGCTTAGGTTCATAAACTGGTGGCTTTGG
13894672 TGGCTTAGGT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
42 32 0.86
43 5 0.14
ACGTcount: A:0.11, C:0.12, G:0.36, T:0.41
Consensus pattern (43 bp):
TGGCTTTGGTGGCTTAGGTTCATAAACTGGTGGCTTTGGGTTC
Found at i:13894650 original size:72 final size:72
Alignment explanation
Indices: 13894561--13895722 Score: 742
Period size: 72 Copynumber: 15.2 Consensus size: 72
13894551 CATATAATGG
* *
13894561 TGGCTTTGGTGGCTTAGGTTCATAAACCGGTGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTT
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTT
13894626 TGGGTTC
66 TGGGTTC
* * *
13894633 TGGCTTTGGTGGCTTAGGTTCATAAACTGGTGGCTTTGGTGGCTTAGGTTCATAAACCGGTGGTT
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTT
13894698 TGGGTTC
66 TGGGTTC
* *
13894705 TGGCTTTGGTGGCTTAGGTTCGTATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTTGGTTCAT
1 TGGCTTTGGTGGCTTAGGTTCATATAC---TGG--T-GG--CT---TT-GGTGGCTTAGGTTCAT
13894770 ATACTGGTGGTTTGGGTTC
54 ATACTGGTGGTTTGGGTTC
*
13894789 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGCTTTGGTGGCTTTGGTTCATATACTGGTGGTT
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTT
13894854 TGGGTTC
66 TGGGTTC
*
13894861 TGGCTTTGGTGGCTTAGGTTCGTATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCAT
1 TGGCTTTGGTGGCTTAGGTTCATATAC---TGG--T-GG--CT---TT-GGTGGCTTAGGTTCAT
* *
13894926 AAACCGGTGGCTTT-GG---
54 ATACTGGTGG-TTTGGGTTC
* * ** * ** ** * * *
13894942 TGGCTTAGGT-TCGTATACTGG-TGGTTTGGGTTCTGGCTTTGGTAGCTTAGGTTCATAAACCGG
1 TGGCTTTGGTGGC-T-TA--GGTTCATAT-ACTGGTGGCTTTGGTGGCTTAGGTTCATATACTGG
13895005 TGGCTTTGGTGGCTT-
61 TGG-TTT-G-GG-TTC
* * * * *
13895020 TGGTTCGTATACTGGTGGTTTGGGTTC-TGGCT-TTGGTGGCTTTGGTGGCTTAGGTTCGTATAC
1 TGG--C-T-T--TGGTGGCTTAGGTTCAT--ATACTGGTGGCTTTGGTGGCTTAGGTTCATATAC
13895083 TGGTGGTTTGGGTTC
58 TGGTGGTTTGGGTTC
* *
13895098 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGCTTTGGTGGCTTAGGTTCATAAACCGGTGGCT
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGCTTTGGTGGCTTAGGTTCATATACTGGTGG-T
13895163 TTGGTGGCTT-
65 TT-G-GG-TTC
* * * * * **
13895173 AGGTTCGTATACTGGTGGTTTGGGTTCTGGCTTTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAG
1 TGG--C-T-T--TGGTGGCTTAGGTTC---ATATACTGG--T-GG--CT---TT-GGTGGCTTAG
* *
13895238 GTTCATAAACCGGTGGCTTT-GG---
48 GTTCATATACTGGTGG-TTTGGGTTC
* * ** * ** ** *
13895260 TGGCTTAGGT-TCGTATACTGG-TGGTTTGGGTTCTGGCTTTGGTGGCTTTGGTTCATATACTGG
1 TGGCTTTGGTGGC-T-TA--GGTTCATAT-ACTGGTGGCTTTGGTGGCTTAGGTTCATATACTGG
13895323 TGGTTTGGGTTC
61 TGGTTTGGGTTC
*
13895335 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGCTTTGGTGGCTTTGGTTCATATACTGGTGGTT
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTT
13895400 TGGGTTC
66 TGGGTTC
* *
13895407 TGGCTTTGGTGGCTTAGGTTCGTATACTGGTGG-TTT-G-GG-TTCTGG--C-T-T--TGGTGGT
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGCTTTGGTGGCTT-AGGTTCATATACTGGTGGT
13895462 TTGGGTTC
65 TTGGGTTC
* ** *
13895470 TGGCTTTGGTGGCTTAGGTTCATA-ACCGGTGGCGGTGGCTTTGTGC-TAGGTTCGTATACTGGT
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGCTTTGG---TG-GCTTAGGTTCATATACTGGT
13895533 GGTTTGGGTTC
62 GGTTTGGGTTC
*
13895544 TGGCTTTGGTGGCTTAGGTTCATATACCGGTGGCTTGGTGGCTTTGGTGGCTTAGGTTCATAAAC
1 TGGCTTTGGTGGCTTAGGTTCATATA-------C-TGGTGGCTTTGGTGGCTTAGGTTCATATAC
*
13895609 CGGTGGTTTGGGTTC
58 TGGTGGTTTGGGTTC
*
13895624 TGGCTTTGGTGGCTTAGGTTCATAAACCGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCAT
1 TGGCTTTGGTGGCTTAGGTTCATATA-C--TGG--T-GG--CT---TT-GGTGGCTTAGGTTCAT
13895689 ATACTGGTGGTTTGGGTTC
54 ATACTGGTGGTTTGGGTTC
13895708 TGGCTTTGGTGGCTT
1 TGGCTTTGGTGGCTT
13895723 TGGTGGCTTA
Statistics
Matches: 886, Mismatches: 87, Indels: 222
0.74 0.07 0.19
Matches are distributed among these distances:
62 7 0.01
63 39 0.04
64 1 0.00
65 1 0.00
66 1 0.00
67 1 0.00
68 5 0.01
69 7 0.01
70 2 0.00
71 8 0.01
72 333 0.38
73 13 0.01
74 44 0.05
75 27 0.03
76 10 0.01
77 6 0.01
78 21 0.02
79 7 0.01
80 66 0.07
81 68 0.08
82 6 0.01
83 23 0.03
84 145 0.16
85 4 0.00
86 1 0.00
87 4 0.00
89 2 0.00
90 2 0.00
92 2 0.00
93 30 0.03
ACGTcount: A:0.10, C:0.13, G:0.36, T:0.41
Consensus pattern (72 bp):
TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTT
TGGGTTC
Found at i:13894710 original size:42 final size:42
Alignment explanation
Indices: 13894663--13895722 Score: 751
Period size: 42 Copynumber: 24.4 Consensus size: 42
13894653 CATAAACTGG
* *
13894663 TGGCTTTGGTGGCTTAGGTTCATAAACCGGTGGTTTGGGTTC
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTC
*
13894705 TGGCTTTGGTGGCTTAGGTTCGTATACTGGTGGTTTGGGTTC
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTC
*
13894747 TGGCTTTGGTGGCTTTGGTTCATATACTGGTGGTTTGGGTTC
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTC
13894789 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGCTTT-GG---
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGG-TTTGGGTTC
13894828 TGGC-TT--TGG--T---T-CATATACTGGTGGTTTGGGTTC
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTC
*
13894861 TGGCTTTGGTGGCTTAGGTTCGTATACTGGTGGTTTGGGTTC
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTC
* *
13894903 TGGCTTTGGTGGCTTAGGTTCATAAACCGGTGGCTTTGGTGGCTT-
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGG-TTT-G-GG-TTC
* * * * * * * *
13894948 AGGTTCGTATACTGGTGGTTTGGGTTC-TGGCT-TTGGTAGCTTAGGTTCATAAACC
1 TGG--C-T-T--TGGTGGCTTAGGTTCAT--ATACTGGT-GGTTTGGGT--T----C
* *
13895003 GGTGGCTTTGGTGGCTTTGGTTCGTATACTGGTGGTTTGGGTTCTGGC
1 --TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGG-T-T--C
*
13895051 TTTGGTGGCTTTGGTGGCTTAGGTTCGTATACTGGTGGTTTGGGTTC
1 -----TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTC
13895098 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGCTTTGGTGGCTT-
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGG-TTT-G-GG-TTC
* *
13895143 AGG-TTCATAAACCGGTGGCTTTGGTGGCTTAGGTTCGTATACTGGTGGTTTGGGTTC
1 TGGCTT--T-----GGT-G--------GCTTAGGTTCATATACTGGTGGTTTGGGTTC
* * * * * *
13895200 TGGCTTTGGTGGTTTGGGTTC-TGGCT-TTGGTGGCTTAGGTTCATAAACC
1 TGGCTTTGGTGGCTTAGGTTCAT--ATACTGGTGG-TTTGGGT--T----C
*
13895249 GGTGGCTTTGGTGGCTTAGGTTCGTATACTGGTGGTTTGGGTTC
1 --TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTC
*
13895293 TGGCTTTGGTGGCTTTGGTTCATATACTGGTGGTTTGGGTTC
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTC
13895335 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGCTTT-GG---
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGG-TTTGGGTTC
13895374 TGGC-TT--TGG--T---T-CATATACTGGTGGTTTGGGTTC
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTC
*
13895407 TGGCTTTGGTGGCTTAGGTTCGTATACTGGTGGTTTGGGTTC
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTC
* * * * * *
13895449 TGGCTTTGGTGGTTTGGGTTC-TGGCT-TTGGTGGCTTAGGTTC
1 TGGCTTTGGTGGCTTAGGTTCAT--ATACTGGTGGTTTGGGTTC
** *
13895491 ATAACCGG-TGGCGGTGGCTTTGTGCTAGGTTCGTATACTGGTGGTTTGGGTTC
1 -T----GGCT-TTGGTGGC----T--TAGGTTCATATACTGGTGGTTTGGGTTC
* *
13895544 TGGCTTTGGTGGCTTAGGTTCATATACCGGTGGCTT-GG---
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTC
* *
13895582 TGGCTTTGGTGGCTTAGGTTCATAAACCGGTGGTTTGGGTTC
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTC
* *
13895624 TGGCTTTGGTGGCTTAGGTTCATAAACCGGTGGTTTGGGTTC
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTC
13895666 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTC
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTC
13895708 TGGCTTTGGTGGCTT
1 TGGCTTTGGTGGCTT
13895723 TGGTGGCTTA
Statistics
Matches: 831, Mismatches: 75, Indels: 224
0.74 0.07 0.20
Matches are distributed among these distances:
29 6 0.01
30 30 0.04
31 2 0.00
33 8 0.01
34 6 0.01
36 12 0.01
38 40 0.05
39 10 0.01
41 6 0.01
42 453 0.55
43 20 0.02
44 6 0.01
45 9 0.01
46 6 0.01
47 9 0.01
48 12 0.01
49 5 0.01
50 18 0.02
51 108 0.13
52 6 0.01
53 20 0.02
54 2 0.00
55 1 0.00
56 3 0.00
57 6 0.01
58 3 0.00
59 3 0.00
60 21 0.03
ACGTcount: A:0.09, C:0.13, G:0.37, T:0.41
Consensus pattern (42 bp):
TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTC
Found at i:13894715 original size:21 final size:21
Alignment explanation
Indices: 13894691--13894809 Score: 93
Period size: 21 Copynumber: 5.7 Consensus size: 21
13894681 TTCATAAACC
13894691 GGTGGTTTGGGTTCTGGCTTT
1 GGTGGTTTGGGTTCTGGCTTT
* * ** *
13894712 GGTGGCTTAGGTTC-GTATACT
1 GGTGGTTTGGGTTCTGGCT-TT
13894733 GGTGGTTTGGGTTCTGGCTTT
1 GGTGGTTTGGGTTCTGGCTTT
* *
13894754 GGTGGCTTT-GGTTCAT--ATACT
1 GGTGG-TTTGGGTTC-TGGCT-TT
13894775 GGTGGTTTGGGTTCTGGCTTT
1 GGTGGTTTGGGTTCTGGCTTT
* *
13894796 GGTGGCTTAGGTTC
1 GGTGGTTTGGGTTC
13894810 ATATACTGGT
Statistics
Matches: 74, Mismatches: 16, Indels: 16
0.70 0.15 0.15
Matches are distributed among these distances:
20 7 0.09
21 60 0.81
22 7 0.09
ACGTcount: A:0.06, C:0.12, G:0.39, T:0.44
Consensus pattern (21 bp):
GGTGGTTTGGGTTCTGGCTTT
Found at i:13894731 original size:114 final size:111
Alignment explanation
Indices: 13894591--13895661 Score: 728
Period size: 114 Copynumber: 9.7 Consensus size: 111
13894581 CATAAACCGG
13894591 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCAT
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCAT
* *
13894656 AAACTGGTGGCTTTGGTGGCTTAGGTTCATAAACCGGTGGTTTGGGTT
66 ATACTGGTGGCTTTGGTGGCTTAGGTTCATATACCGGTGGTTT-GG-T
* *
13894704 CTGGCTTTGGTGGCTTAGGTTCGTATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTTGGTTCA
1 -TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCA
* * **
13894769 TATACTGGTGG-TTTGGGTTCTGGCTTTGGTGGC-T-TA--GGTTCATATACTGG-
65 TATACTGGTGGCTTT-GG---TGGCTTAGGT-TCATATACCGG-TGGT-T--TGGT
* *
13894819 TGGCTTTGGTGGCTTTGGTTCATATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCGT
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCAT
* * ** **
13894884 ATACTGGTGG-TTTGGGTTCTGGCTTTGGTGGC-T-TA--GGTTCATAAACCGG-
66 ATACTGGTGGCTTT-GG---TGGCTTAGGT-TCATATACCGG-TGGT---TTGGT
* *
13894933 TGGCTTTGGTGGCTTAGGTTCGTATACTGGTGGTTTGGGTTCTGGCTTTGGTAGCTTAGGTTCAT
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCAT
* * * * *
13894998 AAACCGGTGGCTTTGGTGGCTTTGGTTCGTATACTGGTGGTTTGGGTTCTGGCTTT
66 ATACTGGTGGCTTTGGTGGCTTAGGTTCATATAC---CGG--T-GGTT-TGG---T
*
13895054 GGTGGCTTTGGTGGCTTAGGTTCGTATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTC
1 --TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTC
*
13895119 ATATACTGGTGGCTTTGGTGGCTTAGGTTCATAAACC--------GG-
64 ATATACTGGTGGCTTTGGTGGCTTAGGTTCATATACCGGTGGTTTGGT
* * *
13895158 TGGCTTTGGTGGCTTAGGTTCGTATACTGGTGGTTTGGGTTCTGGCTTTGGTGG-TTTGG---GT
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCAT
*
13895219 -T-C---TGGCTTTGGTGGCTTAGGTTCATAAACC--------GG-
66 ATACTGGTGGCTTTGGTGGCTTAGGTTCATATACCGGTGGTTTGGT
* *
13895251 TGGCTTTGGTGGCTTAGGTTCGTATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTTGGTTCAT
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCAT
* * **
13895316 ATACTGGTGG-TTTGGGTTCTGGCTTTGGTGGC-T-TA--GGTTCATATACTGG-
66 ATACTGGTGGCTTT-GG---TGGCTTAGGT-TCATATACCGG-TGGT-T--TGGT
* *
13895365 TGGCTTTGGTGGCTTTGGTTCATATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCGT
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCAT
* *
13895430 ATACTGGTGG-TTT-G-GG-TTCTGG--C-T-T--TGGTGGTTTGGGTT
66 ATACTGGTGGCTTTGGTGGCTT-AGGTTCATATACCGGTGGTTT-GG-T
* * *
13895469 CTGGCTTTGGTGGCTTAGGTTCATA-ACCGGTGG---CGG---TGGCTTT-GT-GC-TAGGTTCG
1 -TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCA
*
13895524 TATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCATATACCGGTGGCTTGG-
65 TATAC--------T-GG---TGGCTTTGGTGGCTTAGGTTCATATACCGGTGGTTTGGT
* *
13895582 TGGCTTTGGTGGCTTAGGTTCATAAACCGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCAT
1 TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCAT
* *
13895647 AAACCGGTGG-TTTGG
66 ATACTGGTGGCTTTGG
13895662 GTTCTGGCTT
Statistics
Matches: 811, Mismatches: 54, Indels: 189
0.77 0.05 0.18
Matches are distributed among these distances:
93 84 0.10
94 5 0.01
95 13 0.02
96 3 0.00
97 4 0.00
98 9 0.01
99 1 0.00
101 10 0.01
102 61 0.08
103 2 0.00
104 12 0.01
105 38 0.05
106 1 0.00
107 5 0.01
108 10 0.01
109 6 0.01
110 8 0.01
111 13 0.02
112 28 0.03
113 14 0.02
114 329 0.41
115 7 0.01
116 12 0.01
117 16 0.02
118 4 0.00
119 8 0.01
120 2 0.00
121 2 0.00
122 11 0.01
123 93 0.11
ACGTcount: A:0.10, C:0.13, G:0.36, T:0.41
Consensus pattern (111 bp):
TGGCTTTGGTGGCTTAGGTTCATATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCAT
ATACTGGTGGCTTTGGTGGCTTAGGTTCATATACCGGTGGTTTGGT
Found at i:13894819 original size:21 final size:20
Alignment explanation
Indices: 13894711--13894824 Score: 70
Period size: 21 Copynumber: 5.5 Consensus size: 20
13894701 GTTCTGGCTT
13894711 TGGTGGCTTAGGTTCGTATAC
1 TGGTGGCTTAGGTTC-TATAC
* * * *
13894732 TGGTGGTTTGGGTTCTGGCT-T
1 TGGTGGCTTAGGTTCT--ATAC
*
13894753 TGGTGGCTTTGGTTCATATAC
1 TGGTGGCTTAGGTTC-TATAC
* * * *
13894774 TGGTGGTTTGGGTTCTGGCT-T
1 TGGTGGCTTAGGTTCT--ATAC
13894795 TGGTGGCTTAGGTTCATATAC
1 TGGTGGCTTAGGTTC-TATAC
13894816 TGGTGGCTT
1 TGGTGGCTT
13894825 TGGTGGCTTT
Statistics
Matches: 69, Mismatches: 16, Indels: 16
0.68 0.16 0.16
Matches are distributed among these distances:
20 4 0.06
21 61 0.88
22 4 0.06
ACGTcount: A:0.09, C:0.12, G:0.36, T:0.43
Consensus pattern (20 bp):
TGGTGGCTTAGGTTCTATAC
Found at i:13894849 original size:21 final size:20
Alignment explanation
Indices: 13894825--13894903 Score: 56
Period size: 21 Copynumber: 3.8 Consensus size: 20
13894815 CTGGTGGCTT
13894825 TGGTGGCTTTGGTTCATATAC
1 TGGTGGCTTTGGTTC-TATAC
* *
13894846 TGGTGG-TTTGGGTTCTGGCT-T
1 TGGTGGCTTT-GGTTCT--ATAC
*
13894867 TGGTGGCTTAGGTTCGTATAC
1 TGGTGGCTTTGGTTC-TATAC
13894888 TGGTGG-TTTGGGTTCT
1 TGGTGGCTTT-GGTTCT
13894904 GGCTTTGGTG
Statistics
Matches: 45, Mismatches: 6, Indels: 15
0.68 0.09 0.23
Matches are distributed among these distances:
20 8 0.18
21 33 0.73
22 4 0.09
ACGTcount: A:0.08, C:0.11, G:0.37, T:0.44
Consensus pattern (20 bp):
TGGTGGCTTTGGTTCTATAC
Found at i:13894870 original size:33 final size:30
Alignment explanation
Indices: 13894789--13894856 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
13894779 GTTTGGGTTC
*
13894789 TGGCTTTGGTGGCTTAGGTTCATATACTGG
1 TGGCTTTGGTGGCTTTGGTTCATATACTGG
13894819 TGGCTTTGGTGGCTTTGGTTCATATACTGG
1 TGGCTTTGGTGGCTTTGGTTCATATACTGG
13894849 TGG-TTTGG
1 TGGCTTTGG
13894857 GTTCTGGCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 5 0.14
30 32 0.86
ACGTcount: A:0.10, C:0.12, G:0.35, T:0.43
Consensus pattern (30 bp):
TGGCTTTGGTGGCTTTGGTTCATATACTGG
Found at i:13894912 original size:21 final size:21
Alignment explanation
Indices: 13894846--13894923 Score: 77
Period size: 21 Copynumber: 3.7 Consensus size: 21
13894836 GTTCATATAC
* *
13894846 TGGTGGTTTGGGTTCTGGCTT
1 TGGTGGCTTAGGTTCTGGCTT
** *
13894867 TGGTGGCTTAGGTTC-GTATAC
1 TGGTGGCTTAGGTTCTGGCT-T
* *
13894888 TGGTGGTTTGGGTTCTGGCTT
1 TGGTGGCTTAGGTTCTGGCTT
13894909 TGGTGGCTTAGGTTC
1 TGGTGGCTTAGGTTC
13894924 ATAAACCGGT
Statistics
Matches: 43, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
20 2 0.05
21 39 0.91
22 2 0.05
ACGTcount: A:0.05, C:0.12, G:0.40, T:0.44
Consensus pattern (21 bp):
TGGTGGCTTAGGTTCTGGCTT
Found at i:13894938 original size:30 final size:30
Alignment explanation
Indices: 13894903--13894970 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
13894893 GTTTGGGTTC
13894903 TGGCTTTGGTGGCTTAGGTTCATAAACCGG
1 TGGCTTTGGTGGCTTAGGTTCATAAACCGG
* * *
13894933 TGGCTTTGGTGGCTTAGGTTCGTATACTGG
1 TGGCTTTGGTGGCTTAGGTTCATAAACCGG
13894963 TGG-TTTGG
1 TGGCTTTGG
13894971 GTTCTGGCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
29 5 0.14
30 30 0.86
ACGTcount: A:0.12, C:0.13, G:0.37, T:0.38
Consensus pattern (30 bp):
TGGCTTTGGTGGCTTAGGTTCATAAACCGG
Found at i:13895010 original size:30 final size:30
Alignment explanation
Indices: 13894975--13895042 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
13894965 GTTTGGGTTC
13894975 TGGCTTTGGTAGCTTAGGTTCATAAACCGG
1 TGGCTTTGGTAGCTTAGGTTCATAAACCGG
* * * * *
13895005 TGGCTTTGGTGGCTTTGGTTCGTATACTGG
1 TGGCTTTGGTAGCTTAGGTTCATAAACCGG
13895035 TGG-TTTGG
1 TGGCTTTGG
13895043 GTTCTGGCTT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
29 5 0.15
30 28 0.85
ACGTcount: A:0.12, C:0.13, G:0.35, T:0.40
Consensus pattern (30 bp):
TGGCTTTGGTAGCTTAGGTTCATAAACCGG
Found at i:13895088 original size:21 final size:21
Alignment explanation
Indices: 13895062--13895133 Score: 74
Period size: 21 Copynumber: 3.4 Consensus size: 21
13895052 TTGGTGGCTT
13895062 TGGTGGCTTAGGTTCGTATAC
1 TGGTGGCTTAGGTTCGTATAC
* * ** *
13895083 TGGTGGTTTGGGTTCTGGCT-T
1 TGGTGGCTTAGGTTC-GTATAC
*
13895104 TGGTGGCTTAGGTTCATATAC
1 TGGTGGCTTAGGTTCGTATAC
13895125 TGGTGGCTT
1 TGGTGGCTT
13895134 TGGTGGCTTA
Statistics
Matches: 38, Mismatches: 11, Indels: 4
0.72 0.21 0.08
Matches are distributed among these distances:
20 1 0.03
21 35 0.92
22 2 0.05
ACGTcount: A:0.10, C:0.12, G:0.36, T:0.42
Consensus pattern (21 bp):
TGGTGGCTTAGGTTCGTATAC
Found at i:13895134 original size:30 final size:30
Alignment explanation
Indices: 13895098--13895288 Score: 190
Period size: 30 Copynumber: 6.3 Consensus size: 30
13895088 GTTTGGGTTC
13895098 TGGCTTTGGTGGCTTAGGTTCATATACTGG
1 TGGCTTTGGTGGCTTAGGTTCATATACTGG
* *
13895128 TGGCTTTGGTGGCTTAGGTTCATAAACCGG
1 TGGCTTTGGTGGCTTAGGTTCATATACTGG
*
13895158 TGGCTTTGGTGGCTTAGGTTCGTATACTGG
1 TGGCTTTGGTGGCTTAGGTTCATATACTGG
* ** * ** **
13895188 TGG-TTTGGGTTCTGGCTTTGG-TGGTTTGGGTTC
1 TGGCTTT-GG---TGGCTTAGGTTCATAT-ACTGG
* *
13895221 TGGCTTTGGTGGCTTAGGTTCATAAACCGG
1 TGGCTTTGGTGGCTTAGGTTCATATACTGG
*
13895251 TGGCTTTGGTGGCTTAGGTTCGTATACTGG
1 TGGCTTTGGTGGCTTAGGTTCATATACTGG
13895281 TGG-TTTGG
1 TGGCTTTGG
13895289 GTTCTGGCTT
Statistics
Matches: 129, Mismatches: 25, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
29 8 0.06
30 98 0.76
31 2 0.02
32 4 0.03
33 14 0.11
34 3 0.02
ACGTcount: A:0.10, C:0.13, G:0.37, T:0.40
Consensus pattern (30 bp):
TGGCTTTGGTGGCTTAGGTTCATATACTGG
Found at i:13895209 original size:21 final size:21
Alignment explanation
Indices: 13895185--13895241 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
13895175 GTTCGTATAC
13895185 TGGTGGTTTGGGTTCTGGCTT
1 TGGTGGTTTGGGTTCTGGCTT
13895206 TGGTGGTTTGGGTTCTGGCTT
1 TGGTGGTTTGGGTTCTGGCTT
* *
13895227 TGGTGGCTTAGGTTC
1 TGGTGGTTTGGGTTC
13895242 ATAAACCGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.02, C:0.11, G:0.42, T:0.46
Consensus pattern (21 bp):
TGGTGGTTTGGGTTCTGGCTT
Found at i:13895283 original size:21 final size:21
Alignment explanation
Indices: 13895257--13895370 Score: 79
Period size: 21 Copynumber: 5.4 Consensus size: 21
13895247 CCGGTGGCTT
13895257 TGGTGGCTTAGGTTCGTATAC
1 TGGTGGCTTAGGTTCGTATAC
* * ** *
13895278 TGGTGGTTTGGGTTCTGGCT-T
1 TGGTGGCTTAGGTTC-GTATAC
* *
13895299 TGGTGGCTTTGGTTCATATAC
1 TGGTGGCTTAGGTTCGTATAC
* * ** *
13895320 TGGTGGTTTGGGTTCTGGCT-T
1 TGGTGGCTTAGGTTC-GTATAC
*
13895341 TGGTGGCTTAGGTTCATATAC
1 TGGTGGCTTAGGTTCGTATAC
13895362 TGGTGGCTT
1 TGGTGGCTT
13895371 TGGTGGCTTT
Statistics
Matches: 66, Mismatches: 23, Indels: 8
0.68 0.24 0.08
Matches are distributed among these distances:
20 2 0.03
21 61 0.92
22 3 0.05
ACGTcount: A:0.09, C:0.12, G:0.36, T:0.43
Consensus pattern (21 bp):
TGGTGGCTTAGGTTCGTATAC
Found at i:13895371 original size:30 final size:30
Alignment explanation
Indices: 13895335--13895402 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
13895325 GTTTGGGTTC
13895335 TGGCTTTGGTGGCTTAGGTTCATATACTGG
1 TGGCTTTGGTGGCTTAGGTTCATATACTGG
*
13895365 TGGCTTTGGTGGCTTTGGTTCATATACTGG
1 TGGCTTTGGTGGCTTAGGTTCATATACTGG
13895395 TGG-TTTGG
1 TGGCTTTGG
13895403 GTTCTGGCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 5 0.14
30 32 0.86
ACGTcount: A:0.10, C:0.12, G:0.35, T:0.43
Consensus pattern (30 bp):
TGGCTTTGGTGGCTTAGGTTCATATACTGG
Found at i:13895395 original size:21 final size:19
Alignment explanation
Indices: 13895371--13895449 Score: 52
Period size: 21 Copynumber: 3.8 Consensus size: 19
13895361 CTGGTGGCTT
13895371 TGGTGGCTTTGGTTCATATAC
1 TGGTGG-TTTGGTTC-TATAC
* *
13895392 TGGTGGTTTGGGTTCTGGCT-T
1 TGGTGGTTT-GGTTCT--ATAC
*
13895413 TGGTGGCTTAGGTTCGTATAC
1 TGGTGG-TTTGGTTC-TATAC
13895434 TGGTGGTTTGGGTTCT
1 TGGTGGTTT-GGTTCT
13895450 GGCTTTGGTG
Statistics
Matches: 45, Mismatches: 6, Indels: 15
0.68 0.09 0.23
Matches are distributed among these distances:
20 8 0.18
21 33 0.73
22 4 0.09
ACGTcount: A:0.08, C:0.11, G:0.37, T:0.44
Consensus pattern (19 bp):
TGGTGGTTTGGTTCTATAC
Found at i:13895458 original size:21 final size:21
Alignment explanation
Indices: 13895392--13895490 Score: 119
Period size: 21 Copynumber: 4.7 Consensus size: 21
13895382 GTTCATATAC
13895392 TGGTGGTTTGGGTTCTGGCTT
1 TGGTGGTTTGGGTTCTGGCTT
* * ** *
13895413 TGGTGGCTTAGGTTC-GTATAC
1 TGGTGGTTTGGGTTCTGGCT-T
13895434 TGGTGGTTTGGGTTCTGGCTT
1 TGGTGGTTTGGGTTCTGGCTT
13895455 TGGTGGTTTGGGTTCTGGCTT
1 TGGTGGTTTGGGTTCTGGCTT
* *
13895476 TGGTGGCTTAGGTTC
1 TGGTGGTTTGGGTTC
13895491 ATAACCGGTG
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
20 2 0.03
21 60 0.94
22 2 0.03
ACGTcount: A:0.04, C:0.11, G:0.40, T:0.44
Consensus pattern (21 bp):
TGGTGGTTTGGGTTCTGGCTT
Found at i:13895622 original size:21 final size:21
Alignment explanation
Indices: 13895589--13895665 Score: 59
Period size: 21 Copynumber: 3.7 Consensus size: 21
13895579 TGGTGGCTTT
13895589 GGTGGCTTAGGTTCATAAACC
1 GGTGGCTTAGGTTCATAAACC
* * ** *
13895610 GGTGGTTTGGGTTC-T-GGCTTT
1 GGTGGCTTAGGTTCATAAAC--C
13895631 GGTGGCTTAGGTTCATAAACC
1 GGTGGCTTAGGTTCATAAACC
* *
13895652 GGTGGTTTGGGTTC
1 GGTGGCTTAGGTTC
13895666 TGGCTTTGGT
Statistics
Matches: 40, Mismatches: 12, Indels: 8
0.67 0.20 0.13
Matches are distributed among these distances:
19 1 0.03
20 1 0.03
21 36 0.90
22 1 0.03
23 1 0.03
ACGTcount: A:0.13, C:0.14, G:0.36, T:0.36
Consensus pattern (21 bp):
GGTGGCTTAGGTTCATAAACC
Found at i:13895641 original size:80 final size:79
Alignment explanation
Indices: 13895455--13895722 Score: 411
Period size: 80 Copynumber: 3.4 Consensus size: 79
13895445 GTTCTGGCTT
13895455 TGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCATAACCGGTGGC--GGTGGCTTT-GT-GC
1 TGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCATAACCGGTGGCTTGGTGGCTTTGGTGGC
*
13895516 -TAGGTTCGTATAC
66 TTAGGTTCATATAC
13895529 TGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCATATACCGGTGGCTTGGTGGCTTTGGTGG
1 TGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCATA-ACCGGTGGCTTGGTGGCTTTGGTGG
*
13895594 CTTAGGTTCATAAAC
65 CTTAGGTTCATATAC
* *
13895609 CGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCATAAACCGGTGGTTTGGGTTCTGGCTTTG
1 TGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCAT-AACCGGTGGCTT-GG---TGGCTTTG
13895674 GTGGCTTAGGTTCATATAC
61 GTGGCTTAGGTTCATATAC
13895693 TGGTGGTTTGGGTTCTGGCTTTGGTGGCTT
1 TGGTGGTTTGGGTTCTGGCTTTGGTGGCTT
13895723 TGGTGGCTTA
Statistics
Matches: 177, Mismatches: 6, Indels: 12
0.91 0.03 0.06
Matches are distributed among these distances:
74 39 0.22
75 9 0.05
77 9 0.05
78 2 0.01
79 2 0.01
80 58 0.33
81 3 0.02
84 55 0.31
ACGTcount: A:0.09, C:0.14, G:0.37, T:0.40
Consensus pattern (79 bp):
TGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCATAACCGGTGGCTTGGTGGCTTTGGTGGC
TTAGGTTCATATAC
Found at i:13895660 original size:122 final size:114
Alignment explanation
Indices: 13895456--13895722 Score: 331
Period size: 122 Copynumber: 2.2 Consensus size: 114
13895446 TTCTGGCTTT
*
13895456 GGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCATAACCGGTGGCGGTGGCTTTGTGCTAGGT
1 GGTGGCTTGGG-T-TGGCTTTGGTGGCTTAGGTTCATAACCGGTGGCGGTGGCTTTGTGCTAGGT
* * *
13895521 TCGTATACTGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCATATACC
64 TCATAAACCGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCATATACC
*
13895572 GGTGGCTT-GG-TGGCTTTGGTGGCTTAGGTTCATAAACCGGTGGTTTGGGTTCTGGCTTTGGTG
1 GGTGGCTTGGGTTGGCTTTGGTGGCTTAGGTTCAT-AACCGGTGG---CGG---TGGCTTT-GT-
*
13895635 GCTTAGGTTCATAAACCGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCATATACT
57 GC-TAGGTTCATAAACCGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCATATACC
*
13895694 GGTGGTTTGGGTTCTGGCTTTGGTGGCTT
1 GGTGGCTTGGG-T-TGGCTTTGGTGGCTT
13895723 TGGTGGCTTA
Statistics
Matches: 130, Mismatches: 7, Indels: 18
0.84 0.05 0.12
Matches are distributed among these distances:
112 23 0.18
113 9 0.07
115 2 0.02
116 9 0.07
119 7 0.05
120 2 0.02
121 2 0.02
122 59 0.45
123 2 0.02
126 15 0.12
ACGTcount: A:0.09, C:0.14, G:0.37, T:0.39
Consensus pattern (114 bp):
GGTGGCTTGGGTTGGCTTTGGTGGCTTAGGTTCATAACCGGTGGCGGTGGCTTTGTGCTAGGTTC
ATAAACCGGTGGTTTGGGTTCTGGCTTTGGTGGCTTAGGTTCATATACC
Found at i:13895676 original size:21 final size:21
Alignment explanation
Indices: 13895610--13895725 Score: 78
Period size: 21 Copynumber: 5.5 Consensus size: 21
13895600 TTCATAAACC
13895610 GGTGGTTTGGGTTCTGGCTTT
1 GGTGGTTTGGGTTCTGGCTTT
* * ** *
13895631 GGTGGCTTAGGTTCATAAAC--C
1 GGTGGTTTGGGTTC-T-GGCTTT
13895652 GGTGGTTTGGGTTCTGGCTTT
1 GGTGGTTTGGGTTCTGGCTTT
* * * *
13895673 GGTGGCTTAGGTTCAT--ATACT
1 GGTGGTTTGGGTTC-TGGCT-TT
13895694 GGTGGTTTGGGTTCTGGCTTT
1 GGTGGTTTGGGTTCTGGCTTT
13895715 GGTGGCTTTGG
1 GGTGG-TTTGG
13895726 TGGCTTAGGT
Statistics
Matches: 68, Mismatches: 18, Indels: 17
0.66 0.17 0.17
Matches are distributed among these distances:
19 1 0.01
20 3 0.04
21 55 0.81
22 8 0.12
23 1 0.01
ACGTcount: A:0.08, C:0.12, G:0.39, T:0.41
Consensus pattern (21 bp):
GGTGGTTTGGGTTCTGGCTTT
Found at i:13897856 original size:145 final size:146
Alignment explanation
Indices: 13897573--13897860 Score: 524
Period size: 145 Copynumber: 2.0 Consensus size: 146
13897563 AATGGCTCAC
*
13897573 CTTTTTTATCTCTCGCATTGCTTTTTTTTTCCCCCTAATAATTAAATGGTCCAACAACTCTATAA
1 CTTTTTTATCTCTCGCATTGCTTTTCTTTT-CCCCTAATAATTAAATGGTCCAACAACTCTATAA
*
13897638 AATATTATATTTTCACTTGTTCATCCATTCAACCAAAGATGTACTATAGTGTTTTACTTACTAGA
65 AATATTATATTTTCACTTGTTCATCCATTCAACCAAAGATATACTATAGTGTTTTACTTACTAGA
13897703 TTTATATATGTTATTAT
130 TTTATATATGTTATTAT
13897720 CTTTTTTATCTCTCGCATTGCTTTTCTTTT-CCCTAATAATTAAATGGTCCAACAACTCTATAAA
1 CTTTTTTATCTCTCGCATTGCTTTTCTTTTCCCCTAATAATTAAATGGTCCAACAACTCTATAAA
13897784 ATATTATATTTTCACTTGTTCATCCATTCAACCAAAGATATACTATAGTGTTTTTTACTTACTAG
66 ATATTATATTTTCACTTGTTCATCCATTCAACCAAAGATATACTATAGTG--TTTTACTTACTAG
13897849 ATTTATATATGT
129 ATTTATATATGT
13897861 AATTTAATTT
Statistics
Matches: 137, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
145 83 0.61
147 54 0.39
ACGTcount: A:0.29, C:0.18, G:0.07, T:0.45
Consensus pattern (146 bp):
CTTTTTTATCTCTCGCATTGCTTTTCTTTTCCCCTAATAATTAAATGGTCCAACAACTCTATAAA
ATATTATATTTTCACTTGTTCATCCATTCAACCAAAGATATACTATAGTGTTTTACTTACTAGAT
TTATATATGTTATTAT
Found at i:13900055 original size:2 final size:2
Alignment explanation
Indices: 13900048--13900089 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
13900038 ACATTCAAAG
* *
13900048 AC AC AC AC AC AC AC AC AC AC GC AC AC AC AC AT AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
13900090 TCTCTCTCTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.48, C:0.48, G:0.02, T:0.02
Consensus pattern (2 bp):
AC
Found at i:13908206 original size:14 final size:13
Alignment explanation
Indices: 13908187--13908222 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
13908177 GATTTGACTT
13908187 AAAAAGAAAAAAA
1 AAAAAGAAAAAAA
13908200 GAAAAAGAAAAAAA
1 -AAAAAGAAAAAAA
*
13908214 AAAGAGAAA
1 AAAAAGAAA
13908223 CATACATTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 8 0.38
14 13 0.62
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAAA
Found at i:13914502 original size:61 final size:60
Alignment explanation
Indices: 13914399--13914686 Score: 336
Period size: 61 Copynumber: 4.7 Consensus size: 60
13914389 TCTTGTGTAG
** * *
13914399 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCCTCTTTTTTGAAATTTTATTTTTTAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAATATTTTTTTTTGAAATTTTATTTTTCAA
* * *
13914460 GGAAAATTAATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAACTTTGA-TTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTTGAAA-TTTTATTTTTCAA
* *
13914521 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATCTTTTTTTTTTGAAA-TTTATTTTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAAT-ATTTTTTTTTGAAATTTTA-TTTTTCAA
* *
13914583 GAAAAATTGATACTTTCAACTTTTCCCTAAAAATA---TTTTTCGAAAATTTTGA-TTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTTTTG-AAATTTT-ATTTTTCAA
13914642 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATAT-TTTTTTTT
13914687 TGGAAAATTT
Statistics
Matches: 196, Mismatches: 18, Indels: 24
0.82 0.08 0.10
Matches are distributed among these distances:
58 6 0.03
59 43 0.22
60 9 0.05
61 78 0.40
62 55 0.28
63 5 0.03
ACGTcount: A:0.33, C:0.14, G:0.07, T:0.46
Consensus pattern (60 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTTTTGAAATTTTATTTTTCAA
Found at i:13914663 original size:121 final size:121
Alignment explanation
Indices: 13914399--13914703 Score: 420
Period size: 123 Copynumber: 2.5 Consensus size: 121
13914389 TCTTGTGTAG
* * * *
13914399 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATC-CTCTTTTTTGAAATTT-TATTTTTTAAGG
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATCTTTTTTTTTTGAAATTTAT-TTTTTTAAGA
*
13914462 AAAATTAATACTTTCAACTTTTCCTCAAAAATATTTTTTTTTGAAACTTTGATTTCCAA
65 AAAATTAATACTTTCAACTTTTCCTCAAAAATA--TTTTTTCGAAACTTTGATTTCCAA
13914521 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATCTTTTTTTTTTGAAATTTATTTTTTTAAGAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATCTTTTTTTTTTGAAATTTATTTTTTTAAGAA
* * *
13914586 AAATTGATACTTTCAACTTTTCC-CTAAAAATA-TTTTTCGAAAATTTTGATTTTCAA
66 AAATTAATACTTTCAACTTTTCCTC-AAAAATATTTTTTCG-AAACTTTGATTTCCAA
*
13914642 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTTTTGGAAAATTTCATTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATCT-TTTTTTTTT-G-AAATTT-ATTTTT
13914704 ATTTAAAGAA
Statistics
Matches: 166, Mismatches: 9, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
120 6 0.04
121 49 0.30
122 44 0.27
123 54 0.33
124 7 0.04
125 6 0.04
ACGTcount: A:0.33, C:0.13, G:0.07, T:0.47
Consensus pattern (121 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATCTTTTTTTTTTGAAATTTATTTTTTTAAGAA
AAATTAATACTTTCAACTTTTCCTCAAAAATATTTTTTCGAAACTTTGATTTCCAA
Found at i:13914736 original size:121 final size:118
Alignment explanation
Indices: 13914509--13914738 Score: 250
Period size: 121 Copynumber: 1.9 Consensus size: 118
13914499 TTTTTGAAAC
*
13914509 TTTGATTTCCAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATCTTTTTTTTTTGAAATTTA
1 TTTGATTTCCAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTTGAAATTTA
* * **** **
13914574 TTTTTTTAAGAAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTCGAAAAT
66 TTTTTTTAAGAAAAATAGATA--TTAAAAAAAT-CAAAAAAATATTTTTCGAAAAT
*
13914630 TTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTTTTGGAAAAT
1 TTTGATTTCCAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATAT-TTTTTTTTT-G-AAAT
*
13914695 TTCATTTTTATTTAA-AGAAAATAGA-A-TAAAAAAATAAAAAAAAT
63 TT-A-TTTT-TTTAAGA-AAAATAGATATTAAAAAAATCAAAAAAAT
13914739 GAAAGTGAAA
Statistics
Matches: 91, Mismatches: 11, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
121 46 0.51
122 15 0.16
123 5 0.05
124 6 0.07
125 1 0.01
126 6 0.07
127 12 0.13
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.43
Consensus pattern (118 bp):
TTTGATTTCCAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTTGAAATTTA
TTTTTTTAAGAAAAATAGATATTAAAAAAATCAAAAAAATATTTTTCGAAAAT
Found at i:13914749 original size:34 final size:35
Alignment explanation
Indices: 13914711--13914800 Score: 96
Period size: 34 Copynumber: 2.6 Consensus size: 35
13914701 TTTATTTAAA
* *
13914711 GAAAATAGAATAAAAA-AATAAAA-AAAATGAAAGT
1 GAAAATA-AATAAAAAGAATAAAACAAAATAAAAAT
* *
13914745 GAAAATAAATAAAAATAAAAAAACAAAATAAAAAT
1 GAAAATAAATAAAAAGAATAAAACAAAATAAAAAT
13914780 -AAAATAAAGATAAAAAGAATA
1 GAAAAT-AA-ATAAAAAGAATA
13914801 TTAAATAAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
33 8 0.17
34 18 0.38
35 11 0.23
36 10 0.21
ACGTcount: A:0.77, C:0.01, G:0.08, T:0.14
Consensus pattern (35 bp):
GAAAATAAATAAAAAGAATAAAACAAAATAAAAAT
Found at i:13914760 original size:6 final size:6
Alignment explanation
Indices: 13914751--13914795 Score: 56
Period size: 6 Copynumber: 7.5 Consensus size: 6
13914741 AAGTGAAAAT
* *
13914751 AAATAA AAATAA AAAAACA AAATAA AAAT-A AAATAA AGATAA AAA
1 AAATAA AAATAA AAATA-A AAATAA AAATAA AAATAA AAATAA AAA
13914796 GAATATTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
5 5 0.15
6 23 0.70
7 5 0.15
ACGTcount: A:0.82, C:0.02, G:0.02, T:0.13
Consensus pattern (6 bp):
AAATAA
Found at i:13914767 original size:30 final size:30
Alignment explanation
Indices: 13914724--13914795 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
13914714 AATAGAATAA
*
13914724 AAAAATAAAAAAA-ATGAAAGTGAAAAT-AAAT
1 AAAAATAAAAAAACA--AAA-TAAAAATAAAAT
13914755 AAAAATAAAAAAACAAAATAAAAATAAAAT
1 AAAAATAAAAAAACAAAATAAAAATAAAAT
*
13914785 AAAGATAAAAA
1 AAAAATAAAAA
13914796 GAATATTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
29 6 0.16
30 17 0.46
31 13 0.35
32 1 0.03
ACGTcount: A:0.79, C:0.01, G:0.06, T:0.14
Consensus pattern (30 bp):
AAAAATAAAAAAACAAAATAAAAATAAAAT
Found at i:13914792 original size:11 final size:11
Alignment explanation
Indices: 13914712--13914794 Score: 59
Period size: 11 Copynumber: 7.8 Consensus size: 11
13914702 TTATTTAAAG
*
13914712 AAAATAGAATA
1 AAAATAAAATA
*
13914723 AAAA-AATAAAA
1 AAAATAA-AATA
* *
13914734 AAAATGAAAGTG
1 AAAAT-AAAATA
13914746 AAAAT-AAATA
1 AAAATAAAATA
13914756 AAAAT--AA-A
1 AAAATAAAATA
*
13914764 AAAACAAAATA
1 AAAATAAAATA
13914775 AAAATAAAATA
1 AAAATAAAATA
*
13914786 AAGATAAAA
1 AAAATAAAA
13914795 AGAATATTAA
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
8 5 0.09
9 2 0.04
10 11 0.20
11 30 0.54
12 6 0.11
13 2 0.04
ACGTcount: A:0.78, C:0.01, G:0.06, T:0.14
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:13914825 original size:4 final size:4
Alignment explanation
Indices: 13914818--13914857 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 4
13914808 AACCTATTCT
* *
13914818 AATA AATA AATAA AATA AACA AATA AATA AACA AATA AAT
1 AATA AATA AAT-A AATA AATA AATA AATA AATA AATA AAT
13914858 GAAAAAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
4 27 0.87
5 4 0.13
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.20
Consensus pattern (4 bp):
AATA
Found at i:13914847 original size:12 final size:12
Alignment explanation
Indices: 13914818--13914857 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
13914808 AACCTATTCT
*
13914818 AATAAATAAATAA
1 AATAAACAAAT-A
13914831 AATAAACAAATA
1 AATAAACAAATA
13914843 AATAAACAAATA
1 AATAAACAAATA
13914855 AAT
1 AAT
13914858 GAAAAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
12 16 0.62
13 10 0.38
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.20
Consensus pattern (12 bp):
AATAAACAAATA
Found at i:13915254 original size:31 final size:31
Alignment explanation
Indices: 13915219--13915280 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
13915209 AACTGGGCAG
* *
13915219 GTTGCCGGAAACTTC-AATGTTCGCCGGAATT
1 GTTGCCGAAAAATTCAAAT-TTCGCCGGAATT
*
13915250 GTTGCCGAAAAATTCAAATTTCGTCGGAATT
1 GTTGCCGAAAAATTCAAATTTCGCCGGAATT
13915281 AACCGGAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 24 0.89
32 3 0.11
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (31 bp):
GTTGCCGAAAAATTCAAATTTCGCCGGAATT
Done.