Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 9 of 129
Found at i:1441887 original size:26 final size:26
Alignment explanation
Indices: 1441851--1441903 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1441841 GTTGACTTAG
1441851 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1441877 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1441903 G
1 G
1441904 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1442590 original size:26 final size:25
Alignment explanation
Indices: 1442561--1442610 Score: 91
Period size: 26 Copynumber: 2.0 Consensus size: 25
1442551 GTTGACTTAG
1442561 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCA-TCTAA
1442587 GCATACAGAGTTCATTCCCATCTA
1 GCATACAGAGTTCATTCCCATCTA
1442611 TGATCGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCCATCTAA
Found at i:1443244 original size:26 final size:26
Alignment explanation
Indices: 1443214--1443266 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1443204 GTTGACTTAG
1443214 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1443240 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1443266 G
1 G
1443267 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1445411 original size:26 final size:26
Alignment explanation
Indices: 1445362--1445462 Score: 150
Period size: 26 Copynumber: 3.9 Consensus size: 26
1445352 GACTTAGGCA
* *
1445362 TACGGAGTTCATT-CCAGTCCAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
1445387 TACGAAGTTCATTCCCAGTCTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
* *
1445413 TACGAAGTTCATTCTCAGTCTAAGCA
1 TACGAAGTTCATTCCCAGTCTAAGCG
*
1445439 TACGGAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
1445463 ATCGGATTAG
Statistics
Matches: 69, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 12 0.17
26 57 0.83
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:1448254 original size:452 final size:451
Alignment explanation
Indices: 1447401--1448294 Score: 1477
Period size: 452 Copynumber: 2.0 Consensus size: 451
1447391 GTGCTGGTAC
*
1447401 TTGGCCCTTATATTGGCCCTCTATCCCTTATCAAACCTCAGGAACTCACACCCCCTTAGAGAGCA
1 TTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAGGAACTCACACCCCCTTAGAGAGCA
*
1447466 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGAGGACACTTTTTTCA
66 TTTGAGATTTTACAGGTTTGCTGCAAGTAGCAATTAAAGTGTCTGAAATGAGGACACTTTTTTCA
* * *
1447531 AATGGTCACAAAATCTTGTACACTGCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
131 AATGGTCACAAAATCATGTACACTGCGAGTTTTTAGATGAATTTTTTTATGCATGCCAACAAAAA
* * * *
1447596 TACAATGAGCACGTCTACCTAGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAAATCCCA
196 TACAAGGAGCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCA
* *
1447661 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACATTATG
261 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACATTACG
* * * **
1447726 TGAAGGCTTAAAGGACCGTTGTATGAATTTAGAAGCCATAAAAATGGTATTGGCACGTAGAAATA
326 TGAAGGCTTAAAGGACCGTTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
*
1447791 TGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATTCCATCTTT
391 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATTCCATCTTT
*
1447852 TTGGCCGTTATATTGGCCCCCTATCCCTTATCAAACCTC-GAGAACTCACACCCCCTTAGAGAGC
1 TTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAG-GAACTCACACCCCCTTAGAGAGC
*
1447916 ATTTGAGATTTTACAGGTTTGCTGCAAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTC
65 ATTTGAGATTTTACAGGTTTGCTGCAAGTAGCAATTAAAGTGTCTGAAATGAGGACACTTTTTTC
** *
1447981 AAATGGTCACAAAATCATGTACACTTTGAGGTTTTTAGATGAATTTTTTTATGCATGCGAACAAA
130 AAATGGTCACAAAATCATGTACACTGCGA-GTTTTTAGATGAATTTTTTTATGCATGCCAACAAA
* *
1448046 AATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCC
194 AATACAAGGAGCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCC
* * *
1448111 CGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC-TTC
259 CAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACATT-
*
1448175 ACGTGAAGGCTTAAGGGACCGTTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
323 ACGTGAAGGCTTAAAGGACCGTTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAA
* *
1448240 ATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCAT
388 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCAT
1448295 CCCGCCTCTC
Statistics
Matches: 410, Mismatches: 30, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
450 1 0.00
451 151 0.37
452 258 0.63
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (451 bp):
TTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAGGAACTCACACCCCCTTAGAGAGCA
TTTGAGATTTTACAGGTTTGCTGCAAGTAGCAATTAAAGTGTCTGAAATGAGGACACTTTTTTCA
AATGGTCACAAAATCATGTACACTGCGAGTTTTTAGATGAATTTTTTTATGCATGCCAACAAAAA
TACAAGGAGCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCA
AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACATTACG
TGAAGGCTTAAAGGACCGTTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATTCCATCTTT
Found at i:1448536 original size:26 final size:26
Alignment explanation
Indices: 1448506--1448558 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1448496 GTTGACTTAG
*
1448506 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
*
1448532 GCATACGGAGTTCATTCCAAGTGTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
1448558 G
1 G
1448559 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:1449810 original size:890 final size:887
Alignment explanation
Indices: 1447852--1450429 Score: 3610
Period size: 890 Copynumber: 2.9 Consensus size: 887
1447842 TTCCATCTTT
* * *
1447852 TTGGCCGTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAGAGAGCA
1 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
1447917 TTTGAGATTTTACAGGTTTGCTGCAAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
66 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
1447982 AATGGTCACAAAATCATGTACACTTTGAGGTTTTTAGATGAATTTTTTTATGCATGCGAACAAAA
131 AATGGTCACAAAATCTTGTACAC-TTGA-GTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAA
*
1448047 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCC
194 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* * * *
1448112 GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCAC
259 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCAT
* * * **
1448177 GTGAAGGCTTAAGGGACCGTTGTACGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAAT
324 GTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
*
1448242 ATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-C-CTCT-
389 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * *
1448304 --C--TG-A-T--CAGCG--TAG--TGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
454 GCCGACGTAGTGCCCGCGCCT-GCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGG
** * * *
1448357 AGTTCATTCCCAGTCTAAGATCAGACCAAACC-A-AGTTGTGGCAACAGGATTGGTAGCACGCAG
518 AGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAG
* * * * * *
1448420 AGGGGGACCCGACCGATCCTCGGCTGGCGTATCCCGCCCCTCTGCCCGACTGAGCGCTCGCATGC
582 AGGGGGACCGGA-CGATCCCCGGCTTGCGCATCCCGCCCCTCTG-CCGACTGAGCGCCCGCACGC
*
1448485 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
645 TCGTTTCATGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * ** *
1448550 AAGTGTAAGATCAGACCGGATCAAGGGTTACGGTGGCACATGCTGGGCTCAGGCATGTGCTGGTG
710 CAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTG
* * * * ** *
1448615 CTGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGAACCTGACCAACGGTATTGGGGTTCCGACG
775 CCGCATTTTTCTTTGTCGGGGCATCA-C--CGGAGAACCAAACCAACGGCATTGGGGTTCCGACG
1448680 ATCGGGGGGCCGAGGGGTGTGTGCACACAAGATGTGCGATGAGTGCTGGTAC
837 ATCGGGGGGCCGAGGGGTGTGTG-ACACAAGATGTGCGATGAGTGCTGGTAC
* * * * * *
1448732 TTGGCCCTCATATTGGCCCCTTATCCCTGATCAAACCTCAAGATCTCACACCCTCTTAAAGAGCA
1 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
1448797 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTTG-AATGGAGACACTTTTTTC
66 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTC-TGAAATGGGGACACTTTTTTC
* *
1448861 AAATGGTCACAAAATCTTGTACACTGTGAGTTTTTAGTTGAATTTTTTTGTTCATGCCAACAAAA
130 AAATGGTCACAAAATCTTGTACACT-TGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAA
* * * * *
1448926 ATACAATGAGCACGTCTACCTAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC
194 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCC
* *
1448991 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTCGCTATGAAACTTCAT
259 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCAT
*
1449056 GTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGTGCAGAAAT
324 GTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
* *
1449121 ATGAAGATGCGCCTAAACCCACCTA-CACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTG
389 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
*
1449185 GCCGACGTAGTGCCCGCCGCCTGCCCGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATACGG
454 GCCGACGTAGTGCCCG-CGCCTGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGG
* * *
1449250 AGTTCATTGCCAGTTTAAGATCTGACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAG
518 AGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAG
* * *
1449315 AGGGGGACCAGGTCGATCCCCGGCTTGCGCGTCCCACCCCTCTAGCCGACTGAGCGCCCGCACGC
582 AGGGGGACC-GGACGATCCCCGGCTTGCGCATCCCGCCCCTCT-GCCGACTGAGCGCCCGCACGC
* * *
1449380 TCGTTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCC
645 TCGTTTCATGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
1449445 CAGTCTAAGATCGGATCGGACCAACGGTTGCGGCAGCACATGCTGGGCCCAAGCATGTGCTGGTG
710 CAGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTG
**
1449510 CCGCATTTTTCTTTGTCGGGGCATCACCGGAGAACCAAACTGACGGCATTGGGGTTCCGACGATC
775 CCGCATTTTTCTTTGTCGGGGCATCACCGGAGAACCAAACCAACGGCATTGGGGTTCCGACGATC
* * *
1449575 GGGGGGCCGGGGGGTGTGTG-CACATGATGTGCGATGGGTGCTGGTAC
840 GGGGGGCCGAGGGGTGTGTGACACAAGATGTGCGATGAGTGCTGGTAC
1449622 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
1 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
1449687 ATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
66 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
*
1449752 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
131 AATGGTCACAAAATCTTGTACACTT-GAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAA
* * *
1449817 TACAAGGATCATGTCTACGAAGTTTGGGGCCAAAACCCCTT-TGAAAAAATTTTTAAAAAATCCC
195 TACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCCC
*
1449881 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAT
259 GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCAT
* * * *
1449946 GTGAAGGCTTCAAGGACCATTGTATGAATTTAGAAGCCATAAAAATGACATTGGCATGCAAAAAT
324 GTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAT
**
1450011 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAACTTGCGCATCCCGTCTCTCTG
389 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * *
1450076 GCCGACGTAGTGCCCGC-CC-GCCCGTCTG--CTCAT-TTT-GTCGGTTGGCTTAAGCATACGGA
454 GCCGACGTAGTGCCCGCGCCTGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGA
* * *
1450135 GTTTATTCCTAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGA
519 GTTCATTCC-AGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGA
* * * * * * *
1450200 GGGGGACCCGACTGATCCCTGACTTACTCATCCCGTCCCTCTGGCCGGCTGAGCGCCCGCACGCT
583 GGGGGACCGGAC-GATCCCCGGCTTGCGCATCCCGCCCCTCT-GCCGACTGAGCGCCCGCACGCT
* ** * *
1450265 CATTTCATTCGCTGACTTAGGGATACGGAGTTCATTCCCAGTGTAAGCATACGGAGTTCATTCCC
646 CGTTTCATGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * *
1450330 AGGCTAAGATTGGATCGGACCAAGGGTTCCGGCAGCACATGCTTGGCTC-AGACGTGTGCTGGTG
711 AGTCTAAGATCGGATCGGACCAAGGGTTACGGCAGCACATGCTGGGCTCAAG-CATGTGCTGGTG
* * **
1450394 CCACATTTTTCTTTGTCGGAGCATCGTCGGAGAACC
775 CCGCATTTTTCTTTGTCGGGGCATCACCGGAGAACC
1450430 TGACTGGCCG
Statistics
Matches: 1510, Mismatches: 159, Indels: 54
0.88 0.09 0.03
Matches are distributed among these distances:
878 31 0.02
879 234 0.15
880 145 0.10
881 2 0.00
883 7 0.00
884 271 0.18
885 4 0.00
886 4 0.00
887 1 0.00
888 7 0.00
889 14 0.01
890 401 0.27
891 53 0.04
892 53 0.04
893 64 0.04
894 2 0.00
895 215 0.14
896 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTGAGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCATGT
GAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGACGTAGTGCCCGCGCCTGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGT
TCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGG
GGACCGGACGATCCCCGGCTTGCGCATCCCGCCCCTCTGCCGACTGAGCGCCCGCACGCTCGTTT
CATGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCGGATCGGACCAAGGGTTACGGCAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCAT
TTTTCTTTGTCGGGGCATCACCGGAGAACCAAACCAACGGCATTGGGGTTCCGACGATCGGGGGG
CCGAGGGGTGTGTGACACAAGATGTGCGATGAGTGCTGGTAC
Found at i:1451443 original size:26 final size:26
Alignment explanation
Indices: 1451407--1451459 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1451397 GTTGACTTAG
1451407 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
1451433 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
1451459 G
1 G
1451460 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:1452346 original size:26 final size:26
Alignment explanation
Indices: 1452310--1452362 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1452300 GTTGACTTAG
1452310 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1452336 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1452362 G
1 G
1452363 ATCAGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1453735 original size:26 final size:26
Alignment explanation
Indices: 1453681--1453737 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
1453671 CTCCTTCGAA
* ***
1453681 AAAAAGTTTAAAAAATCCTGAACCGT
1 AAAAAGTTTAAAAAATCATGAAAAAT
*
1453707 AAAAAGTTTCAAAAATCATGAAAAAT
1 AAAAAGTTTAAAAAATCATGAAAAAT
1453733 AAAAA
1 AAAAA
1453738 ATGAGTTGTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.60, C:0.11, G:0.09, T:0.21
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCATGAAAAAT
Found at i:1453848 original size:896 final size:894
Alignment explanation
Indices: 1450438--1454818 Score: 5799
Period size: 895 Copynumber: 4.9 Consensus size: 894
1450428 CCTGACTGGC
* * * *
1450438 CGATCCTCGGCTTGTGCGTCTCGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGT
1 CGATCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * * *
1450503 TGACTTTGGGATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCTCAGTCTAAGATCG
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * *
1450568 GACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCAGGCATGTGCTGCTGCCGCATTTTTC-T
130 AACCAGACCGAGGGTTGGGA-AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTT
* * ** * ** * * * **
1450632 T-CATCGAGCCACCATCACCGGAGCATCGCCAAAGAACCTGACCGGCGGCGTTAGGGTTCCGGTG
194 TGC-TCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
** *
1450696 ATCGGGGCGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGTTCTTATAA
258 ATCGGGG-GGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
1450761 TGGCCTCCTATCCTTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
322 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * *
1450826 AGGTTTGCTGCCAGTAGCGACTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAA
387 AGGTTTGCTG-CAGTAGCCATTAAAGTGTTAGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
*
1450891 TCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
451 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* *
1450956 TCTACCAAGTTTGGGGCCAATACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGT
516 TCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* * * *
1451021 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTTCCATTAAACTTAACGTGAAGGCTTAAGG
581 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
1451086 GACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
646 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
* * * **
1451151 AAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCC-TCCTCTCCGACCGGTATAGTGC
711 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT-CTCTCTGGCCGGCGTAGTGC
* * * * *
1451215 CCACCCGCCCGCTCATTTC-GTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCA
775 CCGCCCGCCCGCTCGTTTCTATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCA
* ** * **
1451279 GACCAGA-TCGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGAC
840 GACCAGACT-GAGGGTTACGAAAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGT
* *
1451334 CGATCCTTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTAGGT
1 CGATCC-TGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
*
1451399 TGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* * * * * * * **
1451464 GACCGGACCGAGGGTTGCGGTAGCACGTGCTGGGCTCTGGAATGTACTGGTGCCATATTTTTCTT
130 AACCAGACCGAGGGTTG-GGAAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTT
* ** * * * **
1451529 CG-TCGGGGCACCATCACCAGAGCATCATCGAAGAACCTGACCGACGGCATTGGGGTTCCGGTGA
194 TGCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
* *
1451593 TCGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
259 TCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * * * *
1451658 GCCCCGTATCCCACATCAAACCTTGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAA
324 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* *
1451723 GTTTGCTGCCAGTATCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
389 GTTTGCTG-CAGTAGCCATTAAAGTGTTAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
1451788 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
453 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
1451853 TACCAAGTTTGGGGCCAAAAAT-CTTTCCAAAAAAATTTTAAAAAATCCCGAACCCTAAAAAGTT
518 TACCAAGTTTGGGGCCAAAACTCCTTT-CAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTT
* *
1451917 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAGGGG
582 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
1451982 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACACAGCAATATGAAGATGTGCCTA
647 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTA
* *
1452047 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCCGGTGTAGTGCCG
712 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-C-
* * * * *
1452112 GTCCGCCCGCCCGCTCGCTCATTTTATCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTCA
775 --CCGCCCGCCCGCTCG-T--TTCTATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAA
** * * * ** * ** *
1452177 GATCAGACTGGATTGAGGGTCACAAAAATAGGATCGACAGCACATAGAGGGGCACCCGGT
835 GATCAGACCAGACTGAGGGTTACGAAAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGT
* * * * * * * * *
1452237 CGATCC-GCAGCTTGAGCATCCCGCCCCTTTGGCCCGCTGTGTGCCCACACGCTTGTTACATGGG
1 CGATCCTG--GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
1452301 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
64 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
1452366 -AGACC-GAACCTAGGGTTGCGACAGCACATGTTGGCCTTAGGCATGTGTTGGTGCCGCATTTTT
129 GA-ACCAG-ACCGAGGGTTGGGA-AGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTT
* * * * * *
1452429 CTTCG-TTGGGGCACCATCGTCAGAGCATCG-CTGGAGAACCTGACCGGCGACATTGGGGTTTCG
191 CTTTGCTCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCCG
* * ** **
1452492 ACGATCGATGGGG-CTGGGGGGTGTGCGCACATGATGTGTAATGGGTGCTGGCGCTTGGCCCTTA
255 ACGATCG-GGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
1452556 TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
319 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
1452621 TACAGGTTTGCTGGCCA-TAGCCATTAAAGTGTTTA-CAATGGGGACACTTTTTTCAAATGGTCA
384 TACAGGTTTGCT-G-CAGTAGCCATTAAAGTG-TTAGAAATGGGGACACTTTTTTCAAATGGTCA
*
1452684 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGA
446 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* *
1452749 TCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTTCAAAAAAATTTTAAAAAATCCCGAACTGT-A
511 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAA
** * * **
1452813 AAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTTATCTTGCCATGAAACTTCACGTGAAGGCT
576 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
1452878 TAACGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATG
641 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
* * *
1452943 TACCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCTTCCCGTCTCTCTGGCCGGCGTA
706 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
*
1453008 GTGCCCGCCCGCCCGCTCGTTTCTA-CGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAG
771 GTGCCCGCCCGCCCGCTCGTTTCTATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAG
* * ** * * * *
1453072 ATCGGACCGGACTGAGGGTTACGGTAGCAGGATTGGCAGCATGTAGATGGGGACCCGGT
836 ATCAGACCAGACTGAGGGTTACGAAAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGT
* *
1453131 CGATCCATGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTTGGT
1 CGATCC-TGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* * *
1453196 TGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATCG
65 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG
* *
1453261 AACCAGACCGAGGGTTGTGGAAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT
130 AACCAGACCGAGGGTTG-GGAAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTT
* * *
1453326 TGCT-GGGGTACCATCGTCGGAGTATCGTCGGAGAACCTGGCCGACGGCATTGGGGTTCCGACGA
194 TGCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
*
1453390 TCTGGGGGGTCGGGGGGGCTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATTT
259 TC-GGGGGGTCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * * * * *
1453455 TGGCCCCCTATTCCTCATCGAACCTCGAGAACACACGCTCCCTTAAAGAGCATTAGAGATTTTAC
322 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
1453520 AGGTTTGTTGCTGTAGCCATTAAAGTGTCTAG-AATGGGGACACTTTTTTCAAATGGTCACAAAA
387 AGGTTTGCTGCAGTAGCCATTAAAGTGT-TAGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* *
1453584 TCTTGTACACTTCGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATG
451 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
** * *
1453649 TCTACCAAGTTTGGCACCAAAACTCC-TTCGAAAAAAAGTTTAAAAAATCCTGAACCGTAAAAAG
516 TCTACCAAGTTTGGGGCCAAAACTCCTTTC-AAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG
* * * * * *
1453713 TTTCAAAAATCATGAAAAATAAAAAATGAGTTGTATTGCCATGAAACTGCACGTGAAGGCTTACG
580 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
1453778 GGACCATTGTATGAATTTACAAGCCATATAAATGGCATTGGCACATAGAAATATGAAGATGTGCC
645 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
* **
1453843 TAAACCCACCAACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGGCGTAGTGC
710 TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--
*
1453908 CCGCCCGCCCGCCCGCCTCCTCGTTTC-ATCGGTTGGCTTAGGCATACGGAGTTCATCCCCAATC
773 --GCCCGCCCGCCCG----CTCGTTTCTATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATC
* * * * * *
1453972 TTAGATCGGACCAAACCGA--GTTACGAAAGCAGGATCGGTAGCACGCAGAGGGGGACCTGG-
832 TAAGATCAGACCAGACTGAGGGTTACGAAAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGT
* * * * * * * *
1454032 CTGGTCCTCGGCTTGCGCATTCCACCCCTCTGGCCGGTTGAGTGCCCACACGCTCATTTCATGGG
1 C-GATCCT-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
1454097 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATACAGAGTTCATTCCCAGTCTAAGATC
64 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * **
1454162 GAACCAGACCGAGGGTTGTGGTAGCACATGCTGGGTTCGGGCATGTGCTGGTGCCAAATTTTTC-
129 GAACCAGACCGAGGGTTG-GGAAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCT
* *
1454226 TT-CATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC-AGTGGCATTAGGGTTCCGA
193 TTGC-TCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGA
* * *
1454289 CGATCGGGGGGTC-GGGGGGTGGGCGCACATGATGTGCGATGGCTGCTGGTGCTTGGCCCTTATA
256 CGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
1454353 TTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTA
321 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
1454418 CAGGTTTGCTGCTAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAA
386 CAGGTTTGCTGC-AGTAGCCATTAAAGTGT-TAGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
1454482 AATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-ACAAAATACAAGGATC
449 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA-AAAATACAAGGATC
* * * * * * * *
1454546 ACGTCTACCGAGTTT-GAGCCAAAACTCCATCCGAAAAAATTTTTAAAAATCTCAAACCGTAAAA
513 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAA
* *
1454610 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGTCTTA
578 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* **
1454675 AGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGGT
643 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT-GT
* * * *
1454740 GCCTAAACCCACCTACCACAGCTAT-AATCCA-TGCTTTCGCATCCCGTGCTCTCTGGCC-GCGT
707 GCCTAAACCCACCTACCAC-CCTATCGATCCACGGCTTGCGCATCCCGT-CTCTCTGGCCGGCGT
*
1454802 AGTGGCCG-CCGCCCGCT
770 AGTGCCCGCCCGCCCGCT
1454819 GCCTGCTCGA
Statistics
Matches: 3079, Mismatches: 345, Indels: 128
0.87 0.10 0.04
Matches are distributed among these distances:
890 2 0.00
894 315 0.10
895 649 0.21
896 516 0.17
897 4 0.00
898 15 0.00
899 294 0.10
900 179 0.06
901 20 0.01
902 445 0.14
903 569 0.18
904 71 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
CGATCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA
ACCAGACCGAGGGTTGGGAAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTTG
CTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
GGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
TTGCTGCAGTAGCCATTAAAGTGTTAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
CAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAA
AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC
CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
GCCCGCTCGTTTCTATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAG
ACTGAGGGTTACGAAAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGT
Found at i:1454137 original size:26 final size:26
Alignment explanation
Indices: 1454107--1454157 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1454097 TTGACTTAGG
*
1454107 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACAGAGTTCATTCCCAGTCTAAA
1454133 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
1454158 GATCGAACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:1455812 original size:26 final size:26
Alignment explanation
Indices: 1455776--1455826 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1455766 TGACTTTGGG
*
1455776 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
1455802 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
1455827 ATCGAATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:1458427 original size:904 final size:900
Alignment explanation
Indices: 1456679--1467276 Score: 14059
Period size: 890 Copynumber: 11.8 Consensus size: 900
1456669 GTGGACTTAG
* * * *
1456679 GCATACGGAGTTCATTCTCAGTCTAAGTTCAGACC-GAACCGAGGGTTGCGGTAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
* ** * * * *
1456743 GCTCGGGCCTGTGCTGGTGCTGCATTTTTCTTTGCTAGGGCACCATAGTCGGAGCGTCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * ** * *
1456808 AACTTGGCCGATGGTATTGGGGTTCCGGTGATCTGGGGGGCCGGGGCGGTGTGTGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCTGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
1456873 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
1456938 CGCTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAA
260 CGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAA
*
1457002 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * * *
1457067 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAACTCATTCCAAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * * * * *
1457132 AAAGTTTAAAAAATC-CTGAACTGTAAAAAGTTTTAAAAATTGTGAAAAATAAAAAACGAGTCTT
454 AAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
1457196 CTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
1457261 GCATTGGCATGAAGAACTATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
1457326 ACGCATCCCGTCTCTCTGGTCGGCATAGTAC-CCACCCGCCCGCCCACTAGCTCATTTCGACGGT
648 ACGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCC-GCCGCCCG-CC-C--GCTCGTTTCGACGGT
* * **
1457390 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATC-GAACCGGACTGAGGGTTGTGATAGCA
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGTGGCAGCA
* * * * * * *
1457454 GGATAGGCAGCATGCAGAGGCGGACCCGATTGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCG
772 GGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCACGACTTGCGCATCCCGCCCCTCTGGCCG
* *
1457519 GCTGAGCGCCCGTACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAA
837 GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
1457583 GCATACGGAGTTTATTCCCAGTCAAAGATCAGACCAGATCGATGATTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1457648 CTCGAGCATGTACTGGTGCCACATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
1457713 ACCTGGCCGACGGTATTAGGGTTCCGACGATCTGGTGGGCCGGGGGGGGTGTGCGCACATGTTGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCTGGGGGGCC-GGGGGGGTGTGCGCACATGATGT
* * *
1457778 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCTAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
1457843 TGCTCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAA
260 CGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAA
* *
1457908 A-AGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
1457972 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAACTCCTTCCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * * * * *
1458036 AAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCGAAAATCGTGAAAAACAGAAAACAAGTCATC
454 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
1458101 TTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTCCAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGG
1458166 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
* * *
1458231 CGCATCCCGTCTCTCTAGTCGGCGTAGTGCCTGACCGCCGGCCCGCCCGCTTGTTTCGACGGTTG
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CT--CCGCC-GCCCGCCCGCTCGTTTCGACGGTTG
* * * ** **
1458296 GCTTAGGCATACGGAGTTCACTCTCAGTCTAAGATCGGACTGGACTGAGGGTTACGGCAGCAGGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGA
* * * * *
1458361 TCGGTAGCACACAGAGGGGGACCCGACCGATCCACGGA-TTGCACATCTCGCCCCTCTGGTCGGC
775 TCGGTAGCACGCAGAGGGGGACCCGATCGATCCAC-GACTTGCGCATCCCGCCCCTCTGGCCGGC
* ** * *
1458425 TGAGCACCCACACGCTCATTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 TGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1458487 GCATACGGAGTTCATGCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *
1458552 CTTGGGCATGTGCTGGTGCCGTATTTTTCTTTGTTGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
1458617 ACCTGGCCGACGGCATTAGGGTTCC-AGTGATCTGGGGGGTCGGGGGAGGGGGGTGTACGCACAT
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCTGGGGGG-C---CG-GGGGGGTGTGCGCACAT
* * *
1458681 GGTGTGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
190 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
1458746 ACTCACGCTCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
255 ACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
1458811 TGGAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATA
320 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
1458876 TTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCC-AAACTCCTTTC
385 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* * *
1458940 GAAAAAATTTAAAAAAATCTCTAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
450 GAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
1459005 CGTCTTGCCATGAAACTTCAGGTGAAGGCTTAACGGACCATTGTATGAATTTCCAAGCCATAAAA
515 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAA
** *
1459070 ATGGTGTTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
580 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
1459135 CTTACGCATCCTGTCTCTCTGGCCAGCGTAGTG---C-CTGCCCACCCGCTCGTTTCGACGGTTG
645 CTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCCGCCGCCCGCCCGCTCGTTTCGACGGTTG
* * *
1459196 GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAAGA
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGA
* * * * * * *
1459261 TCGGCAGCATGTAGAGGGGAACCCGACCGATCCAC-AGCTTGCGCATCCC-ACCCTCTGGTCGGC
775 TCGGTAGCACGCAGAGGGGGACCCGATCGATCCACGA-CTTGCGCATCCCGCCCCTCTGGCCGGC
*
1459324 TGAGCGCCCGTACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 TGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1459386 GCATACGGAGTTCATTTCCAGTCTATGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * *
1459451 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
1459516 ACCTGACCGACGGCATTGGGGTT-CTAGCGATC-GGGGGGCC-GGGGGGTGTGCACACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCTGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
1459578 GCAATAGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGACAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * * *
1459643 CACCCCCCTGAAAGAGCATTTGAGATTTTACAGGATTGCTGCCAGTAGCCAATAAAGTGTTTGAA
260 C-GCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1459708 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
1459773 TTTGCATGCCAAAAAAAATATAAGGATCACGTCTACCAAGTTTGGGTCCAAAAATCCTTTCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * ** *
1459838 AAATTTTAAAAAAT-TCTAGACCGTAAAATGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGT
454 AAATTTTAAAAAATCTCGA-ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
1459902 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTGACAAGGCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1459967 GCATTGGCATGCTGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
1460032 GCGCATACGGTCTCTCTGGCCGGTGTAGTGCTCGCCTGCCCGTCCGCCCGCTTTGTTTCGTCGGT
648 ACGCATCCCGTCTCTCTGGCCGGCGTAGTGCT--CC-G-CCGCCCGCCCGC-TCGTTTCGACGGT
* ** * * *
1460097 TGGCTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCA-ACGGGATTGAGGGTTGAGACAGCAG
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAG
** * * * * * * * * *
1460161 GATCGACAACATGTAGAGGGGTACCCGATCGATCCCCGACTTGCGCATTCTGCCCCTTTGGCCGA
773 GATCGGTAGCACGCAGAGGGGGACCCGATCGATCCACGACTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
1460226 CTGAGCGTCCGTACGCTTGTTTCGTGGGTGGACTAAGGCATACGGAGTTCATT-CCAGTCTAA
838 CTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
1460288 GCATACGGATTTCATTCCCAGTCTAAGCTCAGA-CTGAACTGAGGGTTGTGGCAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCACATGCTGG
** * * *
1460352 GCTCCAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * *
1460417 AACCTAACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCAGGTGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCTGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
1460482 GCGATGGGTGTTGGTATTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
1460547 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAA
260 CGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1460612 TGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
1460677 GTGCATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTTCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * * *
1460742 AATTTTAAAAAATCTTGAACCGTAAAAAGTTTCGATAATCGTGAAAAATAGAAAACAAGTCGTCT
455 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
1460807 TGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTCCAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
1460872 ATTGGCATGCAGCAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAT
585 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
* *
1460937 GTATCCCGTCTCTCTGGCCAGCGTA--G-T------CCCGCCCGCTCGTTTCGACGGTTGGCTTA
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCTCCGCCGCCCGCCCGCTCGTTTCGACGGTTGGCTTA
* * *
1460993 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGTGGCCGCAGGATCGGT
715 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGT
* * *
1461058 AGCACGCAGAGGGGGACTCGATCGATCCACGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGTG
780 AGCACGCAGAGGGGGACCCGATCGATCCACGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
1461123 CCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
845 CCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1461179 GCATACGTAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
1461244 CTCGGGCATGTGCTGGAGCCACATTTTTCTTTGCTAGGG---CA----C----CATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * * *
1461298 ACCTGGCCGACGGCTTTGGGGTTCC-AGCGATCTGGGAGGTCGAGGGGGTGTGCGCCCATGATAT
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCTGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
1461362 GCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
1461427 CGCTCGCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AGA
260 CGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-A
* *
1461491 ATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
1461556 TGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCC-AAACTCTTTTCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * *
1461619 AAATTTTAAAAAATCTCTAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGCCGTC
454 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
1461684 TTGCCATGAAACTTCACGTGAAGGCTTAGCGGACCATTGTATGAATTTCCAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGG
1461749 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
* *
1461814 CGCATCCTGACTCTCTGGCCGGCGTAGTG---C-CCGCCCGCCCGCTCGTTTCGACGGTTGGCTT
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCCGCCGCCCGCCCGCTCGTTTCGACGGTTGGCTT
* * * * * *
1461875 AGGCATACGGAGTTCATTCCCAGTCTAAAATCGGACCAGACTTAGGGTTGTAGTAGCAGGATTGG
714 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGG
* ** * *
1461940 TAGCACGTAGAGGGGGACCCGGCCGATCCACGACTTGCGCATCCCGCCCTTCTGGTCGGCTGAGC
779 TAGCACGCAGAGGGGGACCCGATCGATCCACGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
** *
1462005 GCCCACACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 GCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1462062 GC-T-C--AG---------A--C-----T--G---A-ACCGAGGGTTGTGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
1462101 CTTGGGCATGTGCTGGTGTCACATTTTTCTTCGCCGGGGCACCATCATCCGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
1462166 ACATGACC-AGCGGCATTGGGGTTTCGACGATC-GGAGGGGCCGGGGGGGTGTGCACACATGATG
131 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCTGG-GGGGCCGGGGGGGTGTGCGCACATGATG
* *
1462229 TGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTCAAGAACT
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
1462294 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGA
258 CACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
1462359 AATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
1462424 TTGTGCATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTTCGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * * *
1462489 AAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCGATAATCGTGAAAAATAGAAAACAAGTCGT
453 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
1462554 CTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTCCAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1462619 GCATTGGCATGCAGCAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
1462684 ATGCATCCCGTCTCTCTGGCCAGCGTA--G-T------CCCGCCCGCTCGTTTTGACGGTTGGCT
648 ACGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCCGCCGCCCGCCCGCTCGTTTCGACGGTTGGCT
* * *
1462740 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGTGGCCGCAGGATCG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCG
* * * *
1462805 GTAGCACGCAAAGGGGGACTCGATCAATCCACGACTTGCGCATCCCGCCCCTCTGGCCGACTGAG
778 GTAGCACGCAGAGGGGGACCCGATCGATCCACGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
1462870 CGTCCGTACGCTTGTTTCGTGGGTGGACTTAGGCATACGGAGTTCATTCCCAATCTAA
843 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1462928 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
1462993 CTCAGGCATGTGCTGGTGCCACATTTTTCTTTGCTGGGGCAGCATCGTCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
1463058 ACCTGGCCGACGGCATTGGGGTTCCGATGATCT-GGGGGCCTGGGAGAGGTGTGCGCACATGATG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCTGGGGGGCC-GGG-GGGGTGTGCGCACATGATG
*
1463122 TGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
1463187 ACCCCCCCTTAAAAAGCATTTAAGATTTTAC-GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
1463251 ATGGGGACACTTTTTTCAAATGGTCACAAAAATCTTGTTCACTTCGAGTTTTTAACTGAATATTT
324 ATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
1463316 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CAAGTTTGGGGCC-AAACTCTTTTCGAA
388 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAA
* * *
1463379 AAAATTTTAAAAAATCTCTAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGT
453 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
1463444 CTTGCCATGAAACTTCACGTGAAGGGTTAACGGACCATTGTATGAATTTCCAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1463509 GCATTGGCATGCAGCAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
1463574 ATGCATCCCGTCTCTCTGGCCAGCGTA--G-T------CCCGCCCGCTCGTTTTGACGGTTGGCT
648 ACGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCCGCCGCCCGCCCGCTCGTTTCGACGGTTGGCT
* * *
1463630 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGTGGCCGCAGGATCG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCG
* * * *
1463695 GTAGCACGCAAAGGGGGACTCGATCAATCCACGACTTGCGCATCCCGCCCCTCTGGCCGACTGAG
778 GTAGCACGCAGAGGGGGACCCGATCGATCCACGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
1463760 CGTCCGTACGCTTGTTTCGTGGGTGGACTTAGGCATACGGAGTTCATTCCCAATCTAA
843 CGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1463818 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
1463883 CTCAGGCATGTGCTGGTGCCACATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
1463948 ACCTGGCCGACGGCATTGGGGTTCCGACGATCT-GGGGGCCTGGGAGAGGTGTGCGCACATGATG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCTGGGGGGCC-GGG-GGGGTGTGCGCACATGATG
* *
1464012 TGCGATGGGTGCTGGTACTT-GCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAAATC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
1464076 ACGCTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGA
259 ACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
1464141 ATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGATGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
1464206 TGTGCATGCCAA-AAAAATACAAGGATTACGTCTACCAAGTTTGGCGCCAAAACTCC-TTCCAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * * * * * *
1464269 AAAGTTTAAAAAATATCGAGCCATAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCATC
454 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
1464334 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
1464399 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGGCTTA
584 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
* * *
1464464 CGCATCCCGTCTCTCTGGCCGGTGTAGTGC-CCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCT
649 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCCG-CCGCCCGCCCGCTCGTTTCGACGGTTGGCT
* * * * *
1464528 TAGGCATACGGAGTTCATTCGCAGTCTAAGATCAGACCAAACTGA--GTTGTGGTAGCCGGATTG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCG
* * * *
1464591 GCAGCACGCAGAGGGGGACCCGA-CTGATCCCCGACTTGTC-CATCCCACCCCTCTGGCTGGCTG
778 GTAGCACGCAGAGGGGGACCCGATC-GATCCACGACTTG-CGCATCCCGCCCCTCTGGCCGGCTG
* ** ** *
1464654 AGCGTCCGTATACTTTTTTCGTGGGTGGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 AGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1464714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGA--GTTGTGGTAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * *
1464777 CTCGGGCATGTGTTGGTGCCATATTTTTCTTCACCGGGGTACCATCGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGTCGGAGA
** * * *
1464842 ACCTGACCGACGGCATTATGGTTGCGGCGATCGGGGGGGCCGGGGGGCGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCTGGGGGGCCGGGGGG-GTGTGCGCACATGATGT
* *
1464907 TCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
1464972 CCCCCCCTTAAAAAGCATTTGAGATTTTAC-GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
1465036 TGGGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
1465101 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTTCGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AA
* * * * * * * *
1465166 AAAAATTTAAAAAATCCCCAACTGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGT
453 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
1465231 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCAT-AAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1465295 GCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCGACCACCCTATTGATCCACGGCTT
583 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * *
1465360 ACGCATCCCGTCTTTCTGGCCAGCATAGAGCCCACCCGTCCGTCCGCCCGTTCGTTTCGTCGGTT
648 ACGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-TCCG-CCGCCCGCCCGCTCGTTTCGACGGTT
* * * *
1465425 GGCTTGGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGA-TGAGGGTTGTGACAGTAGG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGG
* * * * ** * * * *
1465489 ATCAGCAGCACGTAGAGGGGGACCAGGCCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGAC
774 ATCGGTAGCACGCAGAGGGGGACCCGATCGATCCACGACTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * * *
1465554 TGATCCCCCGCT-CACTCGTTTCATGGGTTGACTTTGGCATACGGAGTTCATTCCTAGTCTAA
839 TGAGCGCCCG-TACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** ** *
1465616 GCATACGGAGTTCATTCCCATTCTAAGATTGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** *
1465681 CTCGGGCATGTGCTGGTGTCGCATTTTTC-TTCCCGGGGCACCATCACCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *** * * * ** *
1465745 ACTTGACCGGTAGCATTAGGGTTACGATGATC-GGTGGGGCC-GACGGCTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCTGG-GGGGCCGGGGGGGTGTGCGCACATGATGT
* * * * *
1465808 GTGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTTGACAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
1465873 CACCCCCTTAAAGAGCATTTGAGAGTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAA
260 CGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1465938 TAGGGACACTTTTTTTCAAATGGTCCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTT
325 TGGGGACAC-TTTTTTCAAATGGT-CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
1466003 TTGTGCATGCCAA-AAATAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAAATCCTTCCGA
388 TTGTGCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* * *
1466067 AAAAATTTTAAAAAATCACGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
452 AAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
1466132 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * **
1466197 GGCATTGGCACT-CAGCAATATGAAGATGTGCCTAAACCCACCAACCAGCCTATCCATCCACAAC
582 GGCATTGGCA-TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
1466261 ATGCGCATGCCGTCTCTCTGGCCGGAGTAGTGC-CCGCTCGCCCACCCGCTCGTTTC-ATCAGTT
646 TTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCTCCGC-CGCCCGCCCGCTCGTTTCGA-CGGTT
* * * * * ** * *
1466324 GGCTTAGGCATACGTAGTTCATTCCCAATCTAAGATTAGA-CTGCCCCAAGGGTTGTCGCAGCAA
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGTGGCAGCAG
* * * *
1466388 GATCGGTAGCACAC-GAGGGGGACTCGATCGATCC-CCAGCTTGCGCATCCCGTCCCTCTGGCCG
773 GATCGGTAGCACGCAGAGGGGGACCCGATCGATCCACGA-CTTGCGCATCCCGCCCCTCTGGCCG
* * * * * **
1466451 ACTAAGCGCCCGTACGCTCATTTTGTGGGTTCACTTAGGCATACGGAGTTCATTCCTGGTCTAA
837 GCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
1466515 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGACAGCAGATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** *** * **
1466580 CTCAGGCATGTGCTGGTGCTGCATTTTTCTTCAATGGGGCACTATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
1466645 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGTAGGTGTGCGCACATGATAT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCTGGGGGGCCGGGG-GGGTGTGCGCACATGATGT
*
1466710 GCCGATGGGTGCTGGTAC-T-----TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
195 G-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
1466769 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
259 ACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1466834 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
1466899 TGTGCATGCGAATAAAAATACAAGGATCACATCTACCAAGTTTGCGG-CGAAACTCC-TTCTGAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAA
*
1466962 AAAATTTTAAAAAATC-CTGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
453 AAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
1467026 TCTTGCCATGAAACTTCACGTGAAGGGTTAATGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * ** * * *
1467091 GGCATTGGCATTCAAAAATATGAAGATGTGCCTAAACCCATGTACCACTCTATAGATCCACGGGT
582 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
1467156 TGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGTCCGCCCGCCCGCCCCCTCGTTTCGTCGGT
647 TACGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-TCCG-CCGCCCGCCCGCTCGTTTCGACGGT
* * * * *
1467221 TGGCTTAGGCGTACGTAGTTCATTCCCAGTCTAAAATCAGACCAGACCGATGGTTG
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
1467277 CAGCAGCACA
Statistics
Matches: 8613, Mismatches: 918, Indels: 332
0.87 0.09 0.03
Matches are distributed among these distances:
857 57 0.01
858 1 0.00
860 2 0.00
861 1 0.00
863 1 0.00
864 1 0.00
866 191 0.02
867 4 0.00
868 92 0.01
869 183 0.02
870 17 0.00
871 220 0.03
878 219 0.03
879 17 0.00
880 275 0.03
881 2 0.00
882 1 0.00
883 199 0.02
884 1 0.00
886 1 0.00
888 24 0.00
889 378 0.04
890 844 0.10
891 172 0.02
892 317 0.04
893 220 0.03
894 615 0.07
895 202 0.02
896 219 0.03
897 203 0.02
898 258 0.03
899 450 0.05
900 202 0.02
901 176 0.02
902 547 0.06
903 752 0.09
904 810 0.09
905 249 0.03
906 6 0.00
907 8 0.00
908 476 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTTGCTGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCTGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
GCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
CATCCCGTCTCTCTGGCCGGCGTAGTGCTCCGCCGCCCGCCCGCTCGTTTCGACGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGTA
GCACGCAGAGGGGGACCCGATCGATCCACGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1458497 original size:26 final size:26
Alignment explanation
Indices: 1458461--1458513 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1458451 GTTGACTTAG
*
1458461 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
1458487 GCATACGGAGTTCATGCCCAGTCTAA
1 GCATACGGAGTTCATGCCCAGTCTAA
1458513 G
1 G
1458514 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAGTCTAA
Found at i:1459389 original size:26 final size:26
Alignment explanation
Indices: 1459360--1459410 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1459350 GTTGACTTAG
1459360 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1459386 GCATACGGAGTTCATTTCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
1459411 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1460293 original size:25 final size:26
Alignment explanation
Indices: 1460258--1460315 Score: 91
Period size: 25 Copynumber: 2.2 Consensus size: 26
1460248 CGTGGGTGGA
1460258 CTAAGGCATACGGAGTTCATT-CCAGT
1 CTAA-GCATACGGAGTTCATTCCCAGT
*
1460284 CTAAGCATACGGATTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
1460310 CTAAGC
1 CTAAGC
1460316 TCAGACTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 15 0.50
26 15 0.50
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:1461190 original size:26 final size:26
Alignment explanation
Indices: 1461153--1461205 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1461143 GTTGACTTAG
1461153 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1461179 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1461205 G
1 G
1461206 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1462931 original size:26 final size:26
Alignment explanation
Indices: 1462902--1462954 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1462892 GTGGACTTAG
1462902 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1462928 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1462954 G
1 G
1462955 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1463821 original size:26 final size:26
Alignment explanation
Indices: 1463792--1463844 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1463782 GTGGACTTAG
1463792 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1463818 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1463844 G
1 G
1463845 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1464717 original size:26 final size:26
Alignment explanation
Indices: 1464688--1464740 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1464678 GTGGACTTAG
1464688 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1464714 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1464740 G
1 G
1464741 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1465620 original size:26 final size:26
Alignment explanation
Indices: 1465590--1465642 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1465580 GTTGACTTTG
*
1465590 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1465616 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1465642 G
1 G
1465643 ATTGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1466518 original size:26 final size:26
Alignment explanation
Indices: 1466489--1466541 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1466479 GTTCACTTAG
* **
1466489 GCATACGGAGTTCATTCCTGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1466515 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1466541 G
1 G
1466542 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1469268 original size:717 final size:718
Alignment explanation
Indices: 1466515--1469390 Score: 3870
Period size: 710 Copynumber: 4.0 Consensus size: 718
1466505 CCTGGTCTAA
* * * * * * *
1466515 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTG-TGACAGCAGATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAG-CAGCACATGCTGG
** * *** * *
1466579 GCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCAATGGGGCACTATCGTCGGAGCATCACCGGAG
65 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
1466644 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGTAGGTGTGCGCACATGATA
130 AACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGG--GGTGTGCGCACATGATG
**
1466709 TGCCGATGGGTGCTGGTAC-T-----TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
193 TG-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
* *
1466768 CACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-G
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
1466832 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAA-TTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCT-AATTTT
* * * * * **
1466896 TTTTGTGCATGCGAATAAAAATACAAGGATCACATCTACCAAGTTTGCGG-CGAAACTCCTTCTG
386 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
** *
1466960 AAAAAATTTTAAAAAATCCTGAA-T-CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
451 AAAAAATTTTAAAAAATCCCAAACTAC--AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
1467023 TCGTCTTGCCATGAAACTTCACGTGAAGGGTTAATGGACCATTGTATGAATTTACAAGCCATAAA
514 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * ** * *
1467088 AATGGCATTGGCATTCAAAAATATGAAGATGTGCCTAAACCCATGTACCACTCTATAGATCCACG
579 AATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
1467153 GGTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGTCCGCCCGCCCGCCCCCTCGTTTCGTC
644 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCCCGCCCGCCCGCTCATTTCGTC
1467218 GGTTGGCTTAG
708 GGTTGGCTTAG
* * * * * *
1467229 GCGTACGTAGTTCATTCCCAGTCTAAAATCAGACCAGACCGATGGTTGCAGCAGCACATGCTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCACATGCTGGG
*
1467294 C-TGGGCATGTGCTGGTGCCGTATTTTTCTTCCCCGGGG---CA----C----CATCGCCGG-GA
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * *
1467346 ACTTGATGGGCGGCATTAGGGTTCCAACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
1467411 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
1467476 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCATTAGCTATTAAAGTGTCTAAAAA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAA
* *
1467541 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTAATTTTTTTT
* * *
1467606 GTGCGTGCCAACATAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* * * * **
1467671 AGTTTTAAAAAATCTCGAACTATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCAAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
1467736 TGCCATGAAATTTCACGTGAAGCCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
1467801 ATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCGACCACCCTATCGATTTATGGCTTGC
585 ATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
1467866 GCATCCCGTCTCTCTGGCCGGCGTAGT-------GCCCGCCCGCCCGCTCATTTTGTCGGTTGGC
650 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGC
1467924 TTAG
715 TTAG
* * *
1467928 GCATACGAAGTTCATT-CCAGTCTAAAATCAGACCAGACCAAGGGTTGCAGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCACATGCTGGG
* ** * *
1467992 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGAGGCACCATCACCGGAGCATTGTCGGAGA
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
1468057 ACTTGA-CGAGTGGCATTAGGGTTCCGATGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGA-CGGCATTAGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
1468120 GCGATGGGTGTTGGCACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* * *
1468185 CACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTCAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* * *
1468250 ATGGGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTAATTTTTTT
* ** * *
1468315 TGTGCATGCCAACAAGAATACAAGGATCACGTCTAAAAAGTGTGGGGCCAAAAGTCCTTCCAAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * *
1468380 AATTTTTAAAAAATCCCGAACTACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
454 AAATTTTAAAAAATCCCAAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
1468445 TTACCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * * *
1468510 CCCTGG-ATTGCAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTACCGATCCACGACTT
584 CATTGGCA-TGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
1468574 GCGCATCCCGTCTCTCTGGCC-AGTGTAGTGCCCGCCTGCCCGCCTGCCCGCTCATTTCGTCGGT
648 GCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCC-GCCCGCCCGCCCGCTCATTTCGTCGGT
1468638 TGGCTTAG
711 TGGCTTAG
* *** * * *
1468646 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTGCGGTAGCACATGCGGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCACATGCTGGG
** ** **
1468711 CTTGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCGTTAGAGCATCGCCGGAGA
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
1468776 ACCTGACCGACGGCATT-GTGGTTCCGATGATC-AGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTAG-GGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
1468839 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG-ACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
1468903 ACCCCCTTAAAGAGCATTTGAGA-TTTGCAGGTTTGCTGCTAGTAG-CATTAAAAAGTGTCT-GA
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT--AAAGTGTCTAAA
*
1468965 AATGGGGACAC-TTTTTCAAATGGTCAC-AAATCTTGTATAC-TCTGAGCTTTTAGCTAAATTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGCTTTTAGCT-AATTTT
*
1469027 TTTTGTGCATGCCACACAAAAAATAACAAGGATCACTTCTACCAAGTTTGGGG-CAAAACTCCTT
386 TTTTGTGCATGCCA-AC-AAAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * *
1469091 CCCAAAAAAATTTAAAAAAATCCCAAAC-GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATG
448 -CCAAAAAAATTTTAAAAAATCCCAAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
1469155 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
512 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
1469220 AAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAATCCACCTACCA-CCTATCGATCCA
577 AAAATGGCATTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
1469284 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCTCGCCCGTCCGCTCGTTTCG
642 CGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC-GCCCGCCCGCCCGCTCATTTCG
*
1469349 TCAGTTGGCTTAG
706 TCGGTTGGCTTAG
1469362 GCATACGGAGTTCATTCCCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
1469391 TGGCAGCACG
Statistics
Matches: 1916, Mismatches: 195, Indels: 100
0.87 0.09 0.05
Matches are distributed among these distances:
698 45 0.02
699 97 0.05
700 19 0.01
701 37 0.02
702 13 0.01
705 97 0.05
706 106 0.06
707 209 0.11
708 1 0.00
709 1 0.00
710 476 0.25
711 28 0.01
713 32 0.02
714 76 0.04
715 40 0.02
716 141 0.07
717 195 0.10
718 176 0.09
719 124 0.06
720 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (718 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAGCAGCACATGCTGGG
CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTAATTTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
ATTTTAAAAAATCCCAAACTACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
TAG
Found at i:1472536 original size:26 final size:26
Alignment explanation
Indices: 1472506--1472558 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1472496 GTTGACTTAG
*
1472506 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTAATTACCAGTCTAA
*
1472532 GCATACGGAGTTAATTTCCAGTCTAA
1 GCATACGGAGTTAATTACCAGTCTAA
1472558 G
1 G
1472559 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTACCAGTCTAA
Found at i:1477428 original size:876 final size:877
Alignment explanation
Indices: 1470411--1482262 Score: 13706
Period size: 904 Copynumber: 13.4 Consensus size: 877
1470401 CGTCTTACCA
* * * *
1470411 TGAAAGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGTGTAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * *
1470476 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCTGTCTCTTTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
*
1470541 CCGGCGTAGTGCCCGCCCGCCTGTTCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
131 CCGGCGTAGTGCCCG--C-CC-G--C-CC-GCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * *
1470606 ACGGAGCTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGACAGCAGGATCGACAACAT
188 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCAC
* * * * * * *
1470671 GCAGAGGGGGACCCGACCGATCCCTGGCTTGCACATCCTGCCCCTCTGGCTGGCTGAACGTCCAC
253 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* ** * *
1470736 ACGCTCGTTTCGTGGGTTGACTTAGGCGTACGGAAGTTCATTCTTAGTCTAAGATC-GGATCGGA
318 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGG-AGTTCATTCCCAGTCTAAGATCAGAATCAGA
* ** * * * *
1470800 TCG-GGGTTACGACAGCACATGCTGGGCTC-AGGCAAGTGCTGGTGTCACACTTTTCTTCGTCGG
382 CCGAGGGTTGTGACAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGG
* * * * * * *
1470863 GACACCATTGTCGGAGCATTGCCGGAGAACCTGACCAGCGACATTGGGGTTCCGATGA-TCGGGG
446 GGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGACT-GGGG
* * * *
1470927 GGGTCGGGGGGTGTGCGCACATGATGTGCGATTGCTGCTGGTACTCGGCCCTTATATTGGCCCCC
510 GGCT-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
1470992 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAAGTTTGC
574 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * **
1471057 TGTCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATAATCACAAAATCTTGTAC
639 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
1471122 ACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAA
704 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
*
1471187 GTCTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
769 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAA
*
1471252 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
834 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * * * * *
1471296 AGAAGGCTTAGGGGATCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGAATGCAAAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
*
1471361 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCCCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
1471426 CCGGTGTAGTG--CG--CGCCCG--CT--CGCTCGTTTTGTCAGCTGGCTTAGGCATACGGAGTT
131 CCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * ** * * *
1471483 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGCTATGGCAGCAGGATTGGCAGCGCGCAGAGGG
196 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
* * * * *
1471548 GGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGCCGACCGAGCGCCCACACGCTCGT
261 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
1471613 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATC-GAACCAGACCGAGGGTT
326 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAATCAGACCGAGGGTT
* * * ** *
1471677 G-CAGCAGCACATGCTGTGTTCGAGCATGTGCTGGTGCCGCATTTTTCTTCCCCGAGGCACCATC
391 GTGA-CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * * * * **
1471741 GTCGGAGCATCGTCGAAGAACCTAACCGACGGCATTGGGGTTTCGACGATTGGGGGGCCAGGGGG
455 GCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGACTGGGGGGCTGGGGGG
* * * *
1471806 TGTGCGCACATGATGTTCGATGGATGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCGTC
520 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
1471871 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
585 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
1471936 ATTAAAGTATCT-ATAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
650 ATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * * **
1472000 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACTAAGCTTGGGGAA
714 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
1472065 AAAAATCCTTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAACGTGAAAAA
779 AAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* *
1472130 TAAAAAACGAGTCGTCTTGCCAAGAAACTTCACG
844 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
1472164 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGGCATTGGCATGCAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* *
1472229 TGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* ** * * * * * * * *
1472294 CCAGCGTAGTGGTCGCACGCCAGCCCGCCAGCTCATTTCATCTGTTGGCTAAGGCATACGGAGTT
131 CCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * ** * * ** * *
1472359 CATTCTCAGTCTAAGATCAGACCTGACTAAGGGTTGCGGTAGTAGGATCGGTAGCACGTAGAGGA
196 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
* * * * * * *
1472424 GGACCTGGCCGATCCCTGGCTTGTGCATCCCTCCCCTCTGGCAGGCTGGGCGCCCGCACGCTCGT
261 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
1472489 TTCATGGGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGCATACGGAGTTAATTTCCAGT
326 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A-----A-T
* * * * * *
1472554 CTAAGATCGGATTGGACATAGGGTTGTGGCAGCAAATCCTAGGCTC-AGGCATGTGCTGGTGCTG
378 C--AGA-C--------C-GAGGGTTGTGACAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCG
* * ** * *
1472618 TATTTTTCTTCGTTGGGGCACCATCGCTAGAGCATCGTCGGAGAACTTGACCGGCGGCATTGGGG
430 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
* *
1472683 TTCCGACGA-TCGAGGGAGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
495 TTCCGACGACT-G-GGG-GGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
1472747 CCCTTATATTGGCCCCCTATCCCTCATCAAGCCTTGAGAGCTCACACCCCCTTAAAGAGCATTTG
557 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
*
1472812 AGATTTTACCGGTTTGCTGCCAGTAAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
622 AGATTTTACAGGTTTGCTGCCAGT-AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
*
1472877 GGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTG-A-----TT-T---T-----------T-C
686 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
1472920 -----T----T-T-----GTTTGGAGCCAAAACTCCTTCCGATAAAATTTTAAAAAATCTCGAAC
751 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
** *
1472970 C-CTAAAAA-TTGTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCTCG
816 CGC-AAAAAGTT-TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
1473032 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACGGCATTGGCATGCAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* *
1473097 TGAAGATGTGCCTAAACCCACCTACCAGCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-A
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
1473161 CCAGGCGTAGTGCCCGCTCGCCCGCCC-CGCTCGCTCGTTTTGTCGGTTAGCTTAGGCATACAGA
131 CC-GGCGTAGTGCCCGCCCGCCCGCCCTC-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * *
1473225 GTTCATTGCTAGTCTAAGATCGGACCGGACCGAGGGTTGCAGCAGTAGGATCGACAGCACGTAGA
193 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGA
* * * *
1473290 GGGGGACCCGGCCTATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCT
258 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* *
1473355 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTATAAGATCAG-ATCAGTCCGAGG
323 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAATCAGACCGAGG
* * *
1473419 GTTGTGGCAGCACATGCTGGCCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCTGGGGC-CC
388 GTTGTGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACC
* * * * *
1473483 ATCGCCGGAGCATCGCTGGAGAACCTGACCGGCGGCAATGGGGTTTCGACGATCGGGGGGGCCGG
452 ATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA-CTGGGGGGCTGG
* * * * *
1473548 GGGGTATCCGCACATGATGTGCGATGGGTACAGGTACTTGGCCCTTATAATGGCCCCCTATCCCT
516 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * *
1473613 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATATGAGATTTTACAGGTTTGTTGCCAGT
581 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
1473678 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTTGA
646 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
1473743 CTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGG
711 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * * ** *
1473808 GCCAAAACTCCTTTCAAAAAAAATGTAAAAAATCTCGAACCGCAAAAATTTTTGAAAATCATGAA
776 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAA
* * *
1473873 AAATAAAAAATGAGTCGTCTTGCCATGAAACTTCTCG
841 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
1473910 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * *
1473975 TGAAGATGTGCCTAAACCCACCTACTAGCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * *
1474040 CCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCGCACTCATTTTGTCGGTTGGCTTAGGCATACGG
131 CCGGCGTAGTGCCCGCCCGCCCGCCC-TCC-CG--CTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * * * *
1474105 AGTTCATTGCCAGTCTAACATTGGACCAGACCAAGGGTTGCAGCAGTAGGATCGGCAGCACGCAG
192 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
** * * *
1474170 AGGGGGACCCGACCGATCCCCGGCTTATGCATCCCG-CCCTCTGGTCGGCTGAGCGCCCGTATGC
257 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * *
1474234 TCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCGGATTC-GACC-AC
322 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAATCAGACCGA-
* * * * * * *** **
1474297 GGGTTGCGGCAGCAGATGCTGGACTCGGGCATATGCTGGTGCCATTTTTTTCTTCACCGGGGCAC
386 GGGTTGTGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * * * *
1474362 CATCGCCGTAGCATCGCTGAAGAACCTGACCGACGGCATTGGGGTTCCGGCGA-TCGGGGGGCT-
451 CATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGACT-GGGGGGCTG
1474425 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
515 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* * * * *
1474490 TCATCAAACCTCGAGAACTCACAGCCCTTTATAGAGCAATTGAGATTTTACTGGTTTGCTGCCAG
580 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
1474555 TAGCCATTAAAGTGTCT-ATAATGGGGACACTTTATTCAAATGGTCACAAAATCTTGTACATTTT
645 TAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
1474619 GAGTTTTTGGCTGAATTTTTTTGATGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTT
709 GAGTTTTTAGCTGAATTTTTTTG-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * *
1474683 GGGGCCAAAACTCCTACCGAAAAAATTTTAAAAAAT-CTGAACCCCAAAAAGTTTAAAAAATCGT
773 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGT
*
1474747 GAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACG
838 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* **
1474787 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATATAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * *
1474852 TGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACTGCTTGCGCATCCCGTCTCTCTAG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * *
1474917 CCGACGTAGTGCCCGCCTG-CC-CACT-----T-GTTTCGTCAGTTGGCTTAGCCATATGGAGTT
131 CCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * ** * * **
1474974 CATTCCCAGTCTAAGATCAGACTGGACTAAGGGTTGCAGCAGCAGGATCGATAGCACTTAGAGGG
196 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
* * * * *** * * *
1475039 TGACCCGACCGATCCCTGGCTTACGCAACCAATCCTTCTGGCCGGCTGAGCGCCCGCACACTCAT
261 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
1475104 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATATGGAGTTCATTCCCAGT
326 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC------TA---AG---A-T--CAG-
* * ** * * *
1475169 CTAAGATTGGACCAGACCGAGGCTTGCGGTAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCGT
375 ---A-A-T----CAGACCGAGGGTTGTGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGC
* *
1475234 ATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGT
431 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
* * *
1475299 T-CGATGA-TCGGGGGGACTGGGGGGTGTCCGCACATGATGTACGATGGGTGCTGGTACTTGGCC
496 TCCGACGACT-GGGGGG-CTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
*
1475362 CTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
559 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
1475427 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTATTTTCAAATGGT
624 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
1475492 CACAAAATCTTGTACAC-TCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
689 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
*
1475556 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGC
754 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC
* * *
1475621 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAATCGTCTTGCCATGAAACTTCGCG
819 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* * *
1475680 GGAAGGCTTAAGGGACCATTGGATGAATTTACAAGCCATAAAAATGGCATTGACATGCAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * *
1475745 TGAAGATGTGCCCAAACCCACCTACCACCGTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * **** * *
1475810 CCGGCATAGTGCCCGCCCGTCCACCCGATTGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTT
131 CCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * ** * * ** *
1475875 CATTCCCAGTCTAAGATCAGACCGGAGCGAGGGTTGCGATAACAGCATCGGTAGCACGCAGAGTG
196 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
* * * * * * *
1475940 GGACCCGACCGATACCCGACTTGCACATCCCGCCTCTCTGGTCGGCTGAGCGCCCGTATGCTCGT
261 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* * **
1476005 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGATGGAGGGTT
326 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAATCAGACCGAGGGTT
** * *
1476069 ACGACAGCACATGCTGGGCTCGAGCATGTGCTAGTGCCGTATTTTTCTTCGTCGGGG---CA---
391 GTGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * *** *
1476128 -C----CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTTCGGTTACCGGAGGGGCT-GGGGG
456 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGACTGG-GGGGCTGGGGGG
* * *
1476187 TGTGCGCACATGATGTGCAATTGGTGCTGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATC
520 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * * * * *
1476252 AAATCTCAAGAACTCACACCACATTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTCGCA
585 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * * *
1476317 ATTAAAGTGTCTAAAATGAGGACACTTTTTTCAGATGGTCACAAAATCTTGTACATTTCGAGGTT
650 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * ** *
1476382 TTAGCTGAATTTTTTTGTGCATGCCAACAAAATTACAAGTATCACATCTAAGAAGCTTGGGGCCA
715 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
1476447 AAACTCCATCCAAAAAAATTTTAAAAAATCCTGAACCGCAGAAAGGTTT-GAAAATCGTGAAAAA
780 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCA-AAAAGTTTCAAAAATCGTGAAAAA
* *
1476511 AAGAAAACGAGTCGTCTTGCCATGAAACTTCATG
844 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
1476545 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAGATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * *
1476610 TGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGGGCATCCCGTCTCTTTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * * * * * *
1476675 CCAGCGTCGTGCCCGCCCACCCACCCTCCCACTCGTTTCGTCAGTTGGCTTAGGTATTCCGACTT
131 CCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * *
1476740 CATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTACGGTAGCAGGATCGACAGCACGCAGAGGG
196 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
* * *
1476805 GGACCCGACCAATCCCGGGCTTGCACATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
261 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
1476870 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATC-GAATCAGACCGAGGGCT
326 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAATCAGACCGAGGGTT
* * ** * * *
1476934 GTGATAGGACATGCTGGGCTCGAGCATGTGCTGGTGCCAAATTTTTCTTCATCAGGGCACCATTG
391 GTGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * * * * ** *
1476999 CCGGAGCAACGTCGGAGAACCTGATCGACAGCATTGGGGTTTCGGTGACTGGGGTGCTGGGGGGT
456 CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGACTGGGGGGCTGGGGGGT
* * *
1477064 GTGCGCACATAATGTACGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
521 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * *
1477129 AACCTCGAGAACTCACACCCCCGTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGACT
586 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * * *
1477194 TTAAAGTGTCTAAAATGGGGACATTTTTTTCTAATGGTCACAAAATCTTGTACACTACGAGTTTT
651 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
*
1477259 TAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
716 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
** ** ** *
1477324 AACTCCTTCTAAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATTGTGAAAAATA
781 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
* *
1477389 GAAAACGAGTCGCCCTGCCATGAAACTTCACG
846 GAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
1477421 TGAAGGCTTATGGGACCATTGTATGAATTGACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* *
1477486 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACGGCTTGCACATCCCGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
**** * * * * ** *
1477551 CCGGCGTAGTGCTTTTCTGCCTG----CCCGCTTGTTTTGTCGGTTGGCTTAGAAATACGAAGTT
131 CCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * ** *
1477612 CATTCCCAGTCTAAGATTGGATCGGATCGAGGGTTGCGGCAGCAACATCTG-CAGCACACAGAGG
196 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATC-GACAGCACGCAGAGG
*** * *
1477676 GGGACCCGGTTGATCCCCGGCTTGCACATCCCGCCCCTCTAGCCGGCTGAGCGCCCGCACGCTCG
260 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * *
1477741 TTTCGTGGGTTAACTTAGGCATACAGAGCTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
325 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--CAG
* *
1477806 TCTAAGATCAGACCGGACTGAGAGTTG-CAGTAGCACATGCTGGGCTC-AGGCATGTGCTGGTGC
375 ----A-ATCAGACC-GA--G-G-GTTGTGA-CAGCACATGCTGGGCTCGA-GCATGTGCTGGTGC
* * * ** *
1477869 TGCATTTTTCTTTGTCGGGGCACTATCGCTTGAGCATCGTCGGAGAACCTGACCGGCGGCATTGG
428 CGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGG
* * * * **
1477934 CGTTCCGACGA-TCGGGGGGCTGAGGGGTGAGCGCACATGATGTGCAATTTGTGCTGGTACTTGG
493 GGTTCCGACGACT-GGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
1477998 CCCTTATATTGGCCCCCTATCCCTCATCATACCTCGAGAACTCACACCCCCTTAAAGTGCATTTG
557 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
1478063 AGATTTTACAGGTTTGCTGCCAGTAGCCATGAAAGTGTCTGAAATGGGGACACTTTCTTCAAATA
622 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* * * * * *
1478128 GTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGGATGCCAAGAAATATACA
687 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * *
1478193 AGCAACACGTCTACCAACTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAAC
752 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCCGAAC
* ** *
1478258 CCCAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
816 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
1478320 TGAAGGCTTAAGGGACCATTGTATGAATTT----G-C-----AA--GC-----CAT--AAAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
1478366 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * * * * *
1478431 CCGGCGTAGTGCCCGCCTGCCTGCCCACCCGCTTGTTTCATCGATTGGCTTAGGCATATGGAGTT
131 CCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* ** * * * ** *
1478496 CATTCCCAGTCTAAGATTGGACCAAACCGAGGGTTGTGGTAGGAGGATCGGTAGCACGTAGAGGG
196 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
* ** * * *
1478561 GGACCCGACCAATCCTTGGCTTGCGCATCTCGCCCCTCTGGCTGACTGAGCGCCCGCACGCTCGT
261 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
1478626 TTCGTGGGTTGACTTAGGCATACGGAGTTCAGTCCCAGTCTATGCATACGAAGTTCATTCCTAGT
326 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG----T-C-T---AAG---A-T-C-AG-
* * *
1478691 CTAAAATCAGATTGGACCGAGGGTTGTGGCAGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGC
375 ----AATC--A---GACCGAGGGTTGTGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGC
* ** *
1478756 ATTTTTCTTCATCGGGGCACCATCATCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGT
431 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
* *
1478821 TCCGACGA-TCGGGGGTGCCGAGGGGGGTGTGCGCACATGATGTGGGATGGGTGCTGGTACTTGG
496 TCCGACGACT-GGGGG-G-C-TGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
1478885 CCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCCTTTG
557 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
1478950 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAATTGTCTGAAATAGGGACACTTTTTTCAAGTG
622 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
1479015 GTCACAAAATCTTGTACGCTTCCAGTTTTTAGCTG-ATTTTTTTGTGCATGCCAACATAAAA-AC
687 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA-AAAATAC
* * *
1479078 AAGGATCACGTCTACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCTAAC
751 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
* ** *
1479143 CGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACG
816 CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
1479205 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * *
1479270 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGGCTTGCGCATCCCATCTTTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
** * * * *
1479335 CCGATGTACTGCCTGCCCGCCCG-CCTGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
131 CCGGCGTAGTGCCCGCCCGCCCGCCCT-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* *
1479399 TCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGAG-AGCAGGATCGACAGCACACAGAG
195 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG-GCAGCAGGATCGACAGCACGCAGAG
* * * * * *
1479463 GGGGACCCGATCGGTCCCCGGCTTGCACATCCCGCCCCTCTGGTCGGCTGAGCACCCACACGCTC
259 GGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
1479528 GTTTCATGGGTTGACTTAGGCATACGGAGTTCAGTCCCAGTCTATGCATACAGAGTTCATTCCCA
324 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG----T-C-T--A-AG---A-T--CA
* * * *
1479593 GTCTAAGATCAGATCGGACCGAGGTT-TGCAGCAGCACATACTAGGCTCGGGCATGTGCTGGTGC
374 G----A-ATCAGA-CCGA--G-GGTTGTG-A-CAGCACATGCTGGGCTCGAGCATGTGCTGGTGC
* ** *
1479657 CGCATTTTTCTTC-ACTGGGGCACCATCATCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTG
428 CGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* ** *
1479721 GGGTTCAGACGATCAAGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
492 GGGTTCCGACGA-CTGGGGGGCTG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
1479786 GGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
555 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* *
1479851 TGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAATGGGGAC-CTTTTTTTCAA
620 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAA
* *
1479915 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAATAAAAAT
684 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * * * *
1479980 ACAAGGATCACATCTTCCAAGTTTGGGGCCAAAAATACTTCTGAAAAAATTTTAAAAAATCCTGA
749 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* *
1480045 ACCGCAAAAAGTTTCAAAAATCATTAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
814 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
*
1480109 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCATGCAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * * *
1480174 TGAATATTTGCCTAAACCTACCTACCACCCTATCGATCCACAGCTTGCGCATCCCTTCTCTCTGG
66 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
* * * *
1480239 CCGGTGTAGTGCCCACCCGCCCGCCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
131 CCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * *** * * ** *
1480304 CATTCCCAGTCTAAGGTTGGACTGGACCGAGCGTCATGGTAGCAGGATTGGTAGCACGTAGAGGG
196 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
* * * *
1480369 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCACTGGCAGGCTGAGCACCCGCACGTTCGT
261 GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
1480434 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGT
326 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--CAG-
* * * *
1480499 CTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAC
375 ---A-ATCAGA-C---C-GAGGGTTGTGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGC
* * * * * * * *
1480564 ATTTTTCTTTGCCGGGGCACCATCGGCGGAGCATCGTCGGAGAACCTAACTGGCGGCATTAGGCT
431 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGT
* * * *
1480629 TCCGATGATCGGGGGGGCT-GGGGGTGTGCGCACATGATGTGTGATCGGTGCTGGTACTTGGCCC
496 TCCGACGA-CTGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
1480693 TTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT--AGAGCATTTGAGA
560 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * *
1480756 TTTTACAGGTTTGCTGTCAGTTGCAATTAAAGTGTCTGAAATGGGGACATTTTTTTTCAAATGGT
625 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-CTTTTTTCAAATGGT
* *
1480821 CACAAAATCTTGTACACTTCGAGTTTTTAACTGAAGTTTTTTGTGCATGCCAACAAAAATACAAG
689 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * *
1480886 GATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCAAACCGC
754 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGC
*
1480951 -AAAAGTTTC-AAAA---T------TAGAAAACGAGTCGTCTTGCCTTGAAACTTCACG
819 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
***
1480999 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATA
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
* * * *
1481064 TGATGATGTG-TTGAAGCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTG
66 TGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
1481128 GCCGGCGTAGTGCCCGCCCGCCCG---T-----TTGTTTCGTCGATTGGCTTAAGCATACGGAGT
130 GCCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * ** * *
1481185 TCATTCCTAGTCTAAGATCGGACCGGTCTGAAGGTTGTGGCAATAGGATTGACAGCACGGAGAGG
195 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGG
* * *
1481250 GGGACCCG-CTCGATCCCTGGCTTGCGCATCCCGCCCTTCTGGCCGGCTGAGC-CCCTGTACGCT
260 GGGACCCGAC-CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC-GCACGCT
* **
1481313 CGTTTCGTGGGTTGACTTAGGCATACAGAGTTTGTTCCCAGTCTAAGCATACGAAGTTCATTCTC
323 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T---AAG---A---TC
* * * *
1481378 AGTCTACGATCGGACCAGACCGAGGGTTGGGGCAGCACATTCTGGGCTC-AGGCATGTCCTGGTG
373 AG---A--AT-----CAGACCGAGGGTTGTGACAGCACATGCTGGGCTCGA-GCATGTGCTGGTG
* * * *
1481442 TCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATTGCCGGAGAACCTGACCGGCAGCATTG
427 CCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTG
* * * *
1481507 GGGTTCCGACGATCGGGGGGGTCGTGGGGGGTGGGCGCACGTGATGTGTGATGGGTGCTGGTACT
492 GGGTTCCGACGA-CTGGGGGG-C-TGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
1481572 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
554 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
1481637 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
619 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
1481702 ATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAAT
684 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
** * * *
1481766 ACAAGGATCACGTCTACCAAGTAAGGGGCCAAAACTCCATCCGAAAAAATTTTAAAAAATCTCAA
749 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* *
1481831 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATG
814 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* ***
1481895 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-TTAGCCACATAGAAAT
1 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GGCATGCAGAAAT
* * *
1481959 ATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCATCTCTCTG
65 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * * *
1482024 GCCGGCGTAGTGCCGGTCCGCTCGTCCGCCCGTTCGTTTCGTCCGTTGGCTTAGGCATACGGAGT
130 GCCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * * * * *
1482089 TCAGTCCCAGTCTAAGATCGAACCAGATCGACGGTT-CGGTAGCAAGATCGATAGCATGCAGAAG
195 TCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGG
* * * * *
1482153 GGGACCCGACTGATCCCCGGCTTACGCATCCCACCCCTCAGGCCGGCTGAGTGCCCGCACGCTCG
260 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
*
1482218 TTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAG
325 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1482263 CATATGGAGT
Statistics
Matches: 9477, Mismatches: 1177, Indels: 617
0.84 0.10 0.05
Matches are distributed among these distances:
841 71 0.01
842 123 0.01
843 99 0.01
844 8 0.00
847 2 0.00
848 1 0.00
851 1 0.00
852 1 0.00
853 2 0.00
855 2 0.00
856 1 0.00
862 1 0.00
863 1 0.00
864 211 0.02
865 639 0.07
866 77 0.01
867 7 0.00
868 727 0.08
869 439 0.05
870 4 0.00
871 1 0.00
872 187 0.02
873 4 0.00
874 5 0.00
875 76 0.01
876 665 0.07
877 202 0.02
878 505 0.05
879 32 0.00
880 263 0.03
881 128 0.01
882 300 0.03
883 8 0.00
884 297 0.03
885 401 0.04
886 136 0.01
887 263 0.03
888 4 0.00
889 10 0.00
890 172 0.02
891 24 0.00
892 195 0.02
893 384 0.04
894 9 0.00
895 10 0.00
896 171 0.02
897 8 0.00
898 358 0.04
899 106 0.01
900 70 0.01
901 301 0.03
902 197 0.02
903 319 0.03
904 1158 0.12
905 86 0.01
906 3 0.00
908 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (877 bp):
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGGCGTAGTGCCCGCCCGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAATCAGACCGAGGGTT
GTGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
CCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGACTGGGGGGCTGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
GAAAACGAGTCGTCTTGCCATGAAACTTCACG
Found at i:1477799 original size:26 final size:26
Alignment explanation
Indices: 1477759--1477811 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1477749 GTTAACTTAG
1477759 GCATACAGAGCTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
* *
1477785 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGCTCATTCCCAGTCTAA
1477811 G
1 G
1477812 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAGTCTAA
Found at i:1478680 original size:26 final size:26
Alignment explanation
Indices: 1478643--1478693 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
1478633 GTTGACTTAG
*
1478643 GCATACGGAGTTCAGTCCCAGTCTAT
1 GCATACGAAGTTCAGTCCCAGTCTAT
* *
1478669 GCATACGAAGTTCATTCCTAGTCTA
1 GCATACGAAGTTCAGTCCCAGTCTA
1478694 AAATCAGATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGAAGTTCAGTCCCAGTCTAT
Found at i:1479576 original size:26 final size:26
Alignment explanation
Indices: 1479547--1479597 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1479537 GTTGACTTAG
*
1479547 GCATACGGAGTTCAGTCCCAGTCTAT
1 GCATACAGAGTTCAGTCCCAGTCTAT
*
1479573 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCAGTCCCAGTCTA
1479598 AGATCAGATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCAGTCCCAGTCTAT
Found at i:1480481 original size:26 final size:26
Alignment explanation
Indices: 1480451--1480503 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1480441 GTTGACTTAG
*
1480451 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1480477 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1480503 G
1 G
1480504 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1482667 original size:26 final size:25
Alignment explanation
Indices: 1482627--1482678 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
1482617 GTTGACTTAG
1482627 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
1482652 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACG-AGTTCATTCCCAGTCTAA
1482678 G
1 G
1482679 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:1483542 original size:26 final size:26
Alignment explanation
Indices: 1483506--1483558 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1483496 GTTGACTTAG
1483506 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1483532 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1483558 G
1 G
1483559 ATCGGAATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1484842 original size:902 final size:895
Alignment explanation
Indices: 1482331--1485174 Score: 4138
Period size: 890 Copynumber: 3.2 Consensus size: 895
1482321 GCTGGGCTCG
* * * *
1482331 GGCATTGGCACGCAGCAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCTATCCACGGCT
1 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
1482396 TGCGCATCTCGTCTCTCTGGCCGACGTA-GTGCCCGCTTGCCCGCCCGCCCGCTCATTTCGTCGG
66 TGCGCATCCCATCTCTCTGGCCGACGTATGTG-CC-C--GCCCGCCCGCCCGCTCGTTTCGTCGG
* * * ** *
1482460 TTGGCTTAGGCATGCGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTCCTTGTAGTA
127 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGTA
* *
1482525 GGATCGACAGCACACAGAGGGGGACC-GACTGATCCTCGGCTTGCGCATCCCGCCCCTCTGGTCG
192 GGATCGACAGCACACAGAGGGGGACCGGAC-GATCCTCGGCTTACGCATCCTGCCCCTCTGGTCG
* *
1482589 GCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAG
256 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
1482653 CATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTGCGACAGCACATGCTGGA
321 CATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATC-GAGGGTTGCGGCAGCACATGCTGGG
* ** *
1482717 CTCGGGCATGTGTTGGTGTTGCATTTTTCTTCGTCGGGGCACCAT-C---G--T---TGGAGAAC
385 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCGGAGCATCGCCGGAGAAC
*
1482773 CTGACCGGCGGCATTAGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
450 CTGACCGGCGGCATTAGGGTTCTGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
*
1482838 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
514 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACC
* * *
1482903 CCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTATCTAAAATGGG
579 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
* *
1482968 GACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTCCATTTTTTAGCTGAATTTTTTTGTGC
644 GAC-ATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
1483033 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
708 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
** * * *
1483098 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACAAGTTGTCTTGCC
773 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
1483163 ATGAAACTTCACGTGAAGTCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAAT
838 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
1483221 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCATGGCT
1 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** * * *
1483286 TGCAAATCCCATTTCTCTGGCCCACGT-TGT--------GCCTGCCCGCTCGTTTCGTCGGTTGG
66 TGCGCATCCCATCTCTCTGGCCGACGTATGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
1483342 CTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCGGACCAGACC-AGGGGATACGGTAGCAGGA
131 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-GGGTTATGGTAGTAGGA
* * * * * *
1483406 TCGACAGCACACAGAGGGTGACCCGGCCGATCCCCGGCTTAGGCGTCCTGCCCCTCTGGTTGGCT
195 TCGACAGCACACAGAGGGGGA-CCGGACGATCCTCGGCTTACGCATCCTGCCCCTCTGGTCGGCT
1483471 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
259 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
** *
1483536 ACGGAGTTCATTCCTAGTCTAAGATCGGAATGGATCGAGGGTTGC-GCAGCACATGCTGGGCTCA
324 ACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCG
*
1483600 AGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCT
389 GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC--CGGAGCATCGCCGGAGAACCT
* * * * *
1483665 AACCGGCGGCATTGGGGTTCCGGCAATCGGGGGGCCGGGGTGGTGTGCGCACATGATGTGCGGTG
452 GACCGGCGGCATTAGGGTTCTGGCGATCGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATG
* ** *
1483730 GCTGCTAGTACTTGGCCCTTATATTGGCCCTGTATCCTTCATCAAACCTCGAGAACTCACACCCC
516 GGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCC
*
1483795 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGGGA
581 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
*
1483860 CACTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
646 CA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
1483925 GCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT
710 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTT
** *
1483990 AAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCAT
775 AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
1484055 GAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAAATTACAAGCCATAAAAAT
840 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
1484111 GGTATTGGCATGCAGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
1 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** * *
1484176 TGTGCATCCCGTCTCTCTGGCCGGTGTAGTGCCTGCCCGCCCGCCTGCCCGCTCGTTTTGTCGGT
66 TGCGCATCCCATCTCTCTGGCCGACGTA-TG--TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * *
1484241 TGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGATCAGACTAGACCGATGGTTGTGGCAGTAG
128 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGTAG
** * *
1484306 GATCGACAGCATGCAGAGGGGGACTCGGTCGATCCTCGGCTTATGCATCCTGCCCCTCTGGTCGG
193 GATCGACAGCACACAGAGGGGGAC-CGGACGATCCTCGGCTTACGCATCCTGCCCCTCTGGTCGG
* * * * * *
1484371 CTGAGCGCCCGCACGTTTGTTTCTTGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAAGT
257 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * *
1484436 ATACGGGGTTCATTCCTAGTCTATGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCC
322 ATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCT
** *
1484501 CGGGCATGTGCTGGTGCCGCATTTTTCGACGTCGGGGCACCATCACCGGAGCATCGCCGGACAAC
387 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--CCGGAGCATCGCCGGAGAAC
* * * *
1484566 ATGACCGACGGCATTAGGGTTCTGGCGATCGGGGGGCCGGGGAGTTGTGCGCACATGATGTGTGA
450 CTGACCGGCGGCATTAGGGTTCTGGCGATCGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGA
* * *
1484631 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATTAAAGCTCGAGAACTCACACC
514 TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACC
* *
1484696 CCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
579 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
*
1484761 GACATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGTA
644 GACATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
1484826 TGCCAACAAAAATACAAGGATCCCATCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
709 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * *
1484891 TAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTG-AAAATAGAAAACGAGTCGTCTTGCCA
774 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
1484955 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAAT
839 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
1485012 GGCATTGGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
1 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
1485077 TGCGCATCCCATCTCTCTGGCCGATGTA-GTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
66 TGCGCATCCCATCTCTCTGGCCGACGTATGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
1485141 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
131 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
1485175 GAGCTCCGAT
Statistics
Matches: 1747, Mismatches: 171, Indels: 65
0.88 0.09 0.03
Matches are distributed among these distances:
877 1 0.00
878 95 0.05
879 125 0.07
880 63 0.04
881 1 0.00
882 1 0.00
885 1 0.00
887 1 0.00
889 13 0.01
890 571 0.33
892 2 0.00
894 1 0.00
897 66 0.04
899 1 0.00
901 167 0.10
902 383 0.22
903 254 0.15
905 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (895 bp):
GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCATCTCTCTGGCCGACGTATGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGTAGTAGGAT
CGACAGCACACAGAGGGGGACCGGACGATCCTCGGCTTACGCATCCTGCCCCTCTGGTCGGCTGA
GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
GGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCCGGAGCATCGCCGGAGAACCTGACC
GGCGGCATTAGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TAGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACATTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
Found at i:1485810 original size:715 final size:712
Alignment explanation
Indices: 1484436--1485920 Score: 2239
Period size: 715 Copynumber: 2.1 Consensus size: 712
1484426 CAGTCGAAGT
* * * *
1484436 ATACGGGGTTCATTCCTAGTCTATGATCGGACCAGATCGAGGGTTGCGGCAGCACATGCTGGGCC
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTCCGGCAGCACATGCTGGGCC
** * *
1484501 CGGGCATGTGCTGGTGCCGCATTTTTCGACGTCGGGGCACCATCACCGGAGCATCGCCGGACAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCGACACCAGGGCACCATCACCGGACCATCGCCGGACAAC
*** * *
1484566 ATGACCGACGGCATTAGGGTTCTGGCGATCGGGGGGCCGGGGAGTTGTGCGCACATGATGTGTGA
131 ATGACCGACGGCATTAGGGTTCCAACGATCGGGGGGCCGGGGAGGTGTGCGCACATGATGTCTGA
* * *
1484631 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATTAAAGCTCGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCAAGAACTCACACC
*
1484696 CCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGG
*
1484761 GACATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGTA
326 GACATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
1484826 TGCCAACAAAAATACAAGGATCCCATCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
391 TGCCAAAAAAAATACAAGAATCACATCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * *
1484891 TAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAATAGAAAACGAGTCGTCTTGCCAT
456 TAAAAAATCCCGAAC-GCAAAAAGTTTCAAAAATCATGAAAATAAAAAACGAGTCGTCTTGCCAT
*
1484956 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATGGCATTGGC
520 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** *
1485021 ATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
585 AAACAGAAATATAAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
1485086 CATCTCTCTGGCCGA-TGTAGTGCCCGCCCG-CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
650 CATCTCTCTGG-CGAGTGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* *
1485148 ATACGGAGTTCATTCCCAGTCTAAGAT--GAGCTCCGATCGAGGGTTCCGGCAGCACTTGCTGGG
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGA-C-CAGATCGAGGGTTCCGGCAGCACATGCTGGG
* ** ** *
1485211 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGACCATCGCCGGAGA
64 CCCGGGCATGTGCTGGTGCCGCATTTTTCGACACCAGGGCACCATCACCGGACCATCGCCGGACA
* ** *
1485276 ACCTGACCGGTGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTC
129 ACATGACCGACGGCATTAGGGTTCCAACGATC-GGGGGGCCGGGGAGGTGTGCGCACATGATGT-
*
1485340 CT-ATGGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
192 CTGATGGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCAAGAACTC
* *
1485404 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTTTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCACTAAAGTGTCTGAA
*
1485469 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGTATTTTTT
321 ATGGGGACA-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* **
1485534 TGTGCATGCCAAAAAAAATACAAGAATCACGTCTACC-TAGTTTGGGGCCAAAACTCCTTCTGAA
385 TGTGCATGCCAAAAAAAATACAAGAATCACATCTACCAT-GTTTGGGGCCAAAACTCCTTCCAAA
1485598 AAAATTTTAAAAAATCCCGAAC-CATAAAATGTTTCAAAAATCATGAAAAATAAAAAACGAGTCG
449 AAAATTTTAAAAAATCCCGAACGCA-AAAA-GTTTCAAAAATCATG-AAAATAAAAAACGAGTCG
* * * *
1485662 TCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTTCAAGCCATATAAAT
511 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
1485727 GGCATTGGCAAATAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
576 GGCATTGGCAAACAGAAATATAAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
1485792 TGCGCATCCCGTCTCTCTGGCTAGTGTAGTGCCCGCCCGCCCTCCCGCCCGCTCGTTTCGTCGGT
641 TGCGCATCCCATCTCTCTGGCGAGTGTAGTGCCCGCCCG--C-CCCGCCCGCTCGTTTCGTCGGT
1485857 TGGCTTAGGC
703 TGGCTTAGGC
* * * **
1485867 ATTCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGGCAGCA
1 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTCCGGCAGCA
1485921 GGATTGGTAG
Statistics
Matches: 696, Mismatches: 60, Indels: 27
0.89 0.08 0.03
Matches are distributed among these distances:
710 2 0.00
711 1 0.00
712 156 0.22
713 141 0.20
714 146 0.21
715 171 0.25
719 76 0.11
720 1 0.00
721 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (712 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTCCGGCAGCACATGCTGGGCC
CGGGCATGTGCTGGTGCCGCATTTTTCGACACCAGGGCACCATCACCGGACCATCGCCGGACAAC
ATGACCGACGGCATTAGGGTTCCAACGATCGGGGGGCCGGGGAGGTGTGCGCACATGATGTCTGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGG
GACATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAAAAAAAATACAAGAATCACATCTACCATGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
TAAAAAATCCCGAACGCAAAAAGTTTCAAAAATCATGAAAATAAAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
AACAGAAATATAAAGATCTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
ATCTCTCTGGCGAGTGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
Found at i:1486892 original size:26 final size:26
Alignment explanation
Indices: 1486862--1486914 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1486852 GTTGACTTAG
1486862 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1486888 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1486914 G
1 G
1486915 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1487792 original size:26 final size:26
Alignment explanation
Indices: 1487756--1487808 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1487746 GTTGACTTAG
*
1487756 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
1487782 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
1487808 G
1 G
1487809 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:1489566 original size:26 final size:26
Alignment explanation
Indices: 1489514--1489566 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1489504 GTTGACTTAG
*
1489514 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1489540 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1489566 G
1 G
1489567 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1490452 original size:26 final size:26
Alignment explanation
Indices: 1490416--1490468 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1490406 GTTGACTTAG
*
1490416 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1490442 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1490468 G
1 G
1490469 AACGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1491143 original size:902 final size:902
Alignment explanation
Indices: 1488986--1491208 Score: 3468
Period size: 903 Copynumber: 2.5 Consensus size: 902
1488976 AAAGTGTTTG
*
1488986 AAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
1 AAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTTGCATGCCAACAAAAATACAAGGATC
* * *
1489051 ACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC-AAAACAATTTTAAAAAATCCCGAACCACAAA
66 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATCCTGAACCGCAAA
1489115 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
130 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* * *
1489180 AAGGGACCATTGTGTGAATTTCCAAGCCATAAAAATGGCATTGGCACCCAGAAATATGAAGATGT
195 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGT
1489245 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCTTATCCCATCTCTCTGGTCGGTGTAG
260 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCTTATCCCATCTCTCTGGTCGGTGTAG
* *
1489310 TGATCGTCGGCCCGCCCGCCCGCTCGTTTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCCAG
325 TGATCGTCGGCCCGCCCGCCAGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * *
1489375 TCTAAGATCAGACCAGAATGAGGGTTGTGGTAGCAGGATCGATAGCACACAGAGGGGGACCCGGT
390 TCTAAGATCAGACCAGAACGAGGGTTGCGGCAGCAGGATCGATAGCACACAGAGGGGGACCCGAT
*
1489440 CGATCCCTAGTTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCCGTACGCTCGTTTCGTGGG
455 CGATCCCTAGTTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCCG-ACGCTCGTTTCCTGGG
* *
1489505 TTGACTTAGGCATACGGAGTTCATTCCCAATGTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
519 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGAAC
* * * * * *
1489570 GGACCAGTCCGAGGGTTGCGGCAGCATATGCTGGGCTTGGGCATGTGCTGGTGCCACTTTTTTCT
584 GGACCAGACCGAGGGTTGCGGCAACACATGCTGGCCTCGGGCATGTGCTGGTGCCACATTTTTCT
* * *
1489635 TCACCAAGGCACCATCGTCAGACCATCGACGGAGAACCTGATCGACGACATTGGGGTTCCGGCGA
649 TCACCAAGGCACCATCGCCAGACCAGCGACGGAGAACCTGACCGACGACATTGGGGTTCCGGCGA
* *
1489700 TAGGGGAGCGGGGGGGTGTGCGCGCATGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTGG
714 TAGGGGAGCGGGGGGGTGTGCGCACACGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTGG
1489765 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAACATTTGAGATTTTACAGG
779 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAACATTTGAGATTTTACAGG
* *
1489830 TTTGCTGCCAGTAGGCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACA
844 TTTGCTGCCAGTAGCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAATGGTCACA
* * *
1489889 AAATCTTGTACACTTTGAGTTTTTAGCTTAATTTTTTTTTGCATGCCAATAAAAATACAAGGATC
1 AAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTTGCATGCCAACAAAAATACAAGGATC
* *
1489954 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCTGAACCGCAAAA
66 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAA
* * * *
1490019 AGTTTCAAAAATCGTGAAAAATATAAAATGAGTCATCTTTCCATGAAACTTCACGTGAAGGCTTA
131 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * ** * *
1490084 AGGGACCATTATTTGAATTTACCTGCCTTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTG
196 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
1490149 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCTTATCCCATCTCTCTGGTCGGTGTAGT
261 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCTTATCCCATCTCTCTGGTCGGTGTAGT
1490214 GATCGTCGGCCCGCCCGCCCA-CTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
326 GATCGTCGGCCCGCCCG-CCAGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
1490278 TCTAAGATCAGACCAGAACGAGGGTTGCGGCAGCAGGATCGATAGCACACAGAGGGGGACCCGAT
390 TCTAAGATCAGACCAGAACGAGGGTTGCGGCAGCAGGATCGATAGCACACAGAGGGGGACCCGAT
* *
1490343 CGATCCCTAGTTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCTGCG-CGCTCGTTTCCTGGG
455 CGATCCCTAGTTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC-CCGACGCTCGTTTCCTGGG
* * *
1490407 TTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAAC
519 TTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGAAC
* *
1490472 GGACCGGACCGAGGGTTGCGGCAACACATGCTGGCCTCGGGCATGTGCTGGTGCCGCATTTTTCT
584 GGACCAGACCGAGGGTTGCGGCAACACATGCTGGCCTCGGGCATGTGCTGGTGCCACATTTTTCT
* * * * * * *
1490537 TCATCGAGGCACCATCGCCGGAGCAGCGTCGGAGAACCTGACCGACGGCATTGGGGTT-CGGTGA
649 TCACCAAGGCACCATCGCCAGACCAGCGACGGAGAACCTGACCGACGACATTGGGGTTCCGGCGA
* *
1490601 TCGGGGGGGCCGGGGGGGTGTGCGCACACGATGTG-TGATGGGTGCTGGTACTTGGCCCTTATAT
714 T-AGGGGAG-CGGGGGGGTGTGCGCACACGATGTGCT-ATGGGTGCTGGTACTTGGCCCTTATAT
* * *
1490665 TGGCCCCCTATCCCTCTTCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
776 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAACATTTGAGATTTTAC
* * *
1490730 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGATATTTTTTTCAAATGGTCACA
841 AGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAATGGTCACA
* * * *
1490792 AAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTTTTCATGCCAA-AAAAATGCAAGGATC
1 AAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTTGCATGCCAACAAAAATACAAGGATC
* * *
1490856 ATGTCTACCAAGTTTGGGGACAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAA
66 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAA
* *
1490921 AGTTTCAAAAATCGTGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTA
131 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * *
1490986 AGGGACCATTGTATGAATTTGCAAGGCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTG
196 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
* ** * * * ***
1491051 CCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGTCTTTCTGGCCAACGTAGT
261 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCTTATCCCATCTCTCTGGTCGGTGTAGT
** * * * *
1491116 GCCCGCCCGCCCACCCGCCAGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
326 GATCGTCGGCCCGCCCGCCAGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
** **
1491181 CTAAGATTGGACCAGTCCGAGGGTTGCG
391 CTAAGATCAGACCAGAACGAGGGTTGCG
1491209 ATAGCACATG
Statistics
Matches: 1204, Mismatches: 109, Indels: 15
0.91 0.08 0.01
Matches are distributed among these distances:
901 9 0.01
902 510 0.42
903 677 0.56
904 8 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
AAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTTGCATGCCAACAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAA
AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCTTATCCCATCTCTCTGGTCGGTGTAGT
GATCGTCGGCCCGCCCGCCAGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCAGAACGAGGGTTGCGGCAGCAGGATCGATAGCACACAGAGGGGGACCCGATC
GATCCCTAGTTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCCGACGCTCGTTTCCTGGGTT
GACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGAACGG
ACCAGACCGAGGGTTGCGGCAACACATGCTGGCCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
ACCAAGGCACCATCGCCAGACCAGCGACGGAGAACCTGACCGACGACATTGGGGTTCCGGCGATA
GGGGAGCGGGGGGGTGTGCGCACACGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAACATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTATCTGAAATAGGGACACTTTTTTCAAATGGTCACA
Found at i:1491846 original size:704 final size:709
Alignment explanation
Indices: 1490442--1491912 Score: 2156
Period size: 704 Copynumber: 2.1 Consensus size: 709
1490432 CCTAGTCTAA
* * *
1490442 GCATATGGAGTTCATTCCCAGTCTAAGAACGGACCGGACCGAGGGTTGCGGCAACACATGCTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGAACGGACCAGACCGAGGGTTGCGACAACACATGCTGGC
* *
1490507 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCCGGAGCAGCGTCGGAGA
66 CTCGGGCATGTGCTAGTGCCGCAATTTTCTTCATCGAGGCACCAT-------GCAGCG-CGGAGA
* **
1490572 ACCTGACCGACGGCATTGGGGTTCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACACGATGTGT
123 ACCTGACCGACGGCATTGGGGTTCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACACGATGTAC
* *
1490637 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCGAGAACTCACA
188 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACA
*
1490702 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATA
253 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATA
* * *
1490767 GGGATATTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTTT
318 GGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* * * * * *
1490832 TCATGCCAAAAAAATGCAAGGATCATGTCTACCAAGTTTGGGGACAAAACTCCTTCCGAAAAAAT
383 ACATGCCAAAAAAATACAAGGATAACGTATACCAAGTTTGGGGACAAAAATCCTTCCGAAAAAAT
*
1490897 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGAGTCGTCTTGC
448 TTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTTGC
* * *
1490962 CATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGGCATAAAAATGGCATT
513 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
1491027 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCA
578 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACATACCAACCTATCGATCCACGGCTTGCGCA
* * *
1491092 TCCCGTCTTTCTGGCCAACGTAGTGCCCGCCCGCCCACCCGCCAGCTCGTTTCGTCGGTTGGCTT
643 TCCCGTCTCTCCGGCCAACGTAGTGCCCGCCCGCCCACCCGCCAGCTCGTTTCGTCGGTTAGCTT
1491157 AG
708 AG
** * * * *
1491159 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGTCCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAACGGACCAGACCGAGGGTTGCGACAACACATGCTGGC
* *
1491224 CTCGGGCATGTTCTAGTGCCGTAATTTTCTTCATCGAGGCACCAT-C-GC-CGGAGAACCTGACC
66 CTCGGGCATGTGCTAGTGCCGCAATTTTCTTCATCGAGGCACCATGCAGCGCGGAGAACCTGACC
* * *
1491286 GGCGGCATTGGGGTTTCGATGATC-TGGGGGCCGGGGGGGTGTGCGCACATGATGTACGATGGGT
131 GACGGCATTGGGG-TTCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACACGATGTACGATGGGT
* *
1491350 GCTGGTACTTGGCCCTTATTTTGGCCCGCTATCCCTCATCAAA-CTCGAGAACCCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTT
*
1491414 AAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
260 AAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACAC
* *
1491479 TTTTTTCAAATGGTTGA-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATACATGC
325 TTTTTTCAAATGG-TCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTATACATGC
*
1491543 CAACAAAAATACAAGGATAACG-ATACCAAGTTTGGGGCCAAAAATCCTTTCC-AAAAAATTTTA
389 CAA-AAAAATACAAGGATAACGTATACCAAGTTTGGGGACAAAAATCC-TTCCGAAAAAATTTTA
* * * *
1491606 AAAAAT-CTCGAACCG-CAAAATTTTCAAAAATCATGAAAAATAGAAAACGATTCG-CATTGCCA
452 AAAAATCCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTC-TTGCCA
*
1491668 TGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
515 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
1491733 CACGTAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATTGAT-CAGTGGCTTGCGCAT
580 CACGTAGAAATATGAAGATGTGCCTAAACCCACATACCAACCTATCGATCCA-CGGCTTGCGCAT
* * * *
1491797 CCCGTCTCTCCGGCCAGCGTAGTGCCTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTAGCTTA
644 CCCGTCTCTCCGGCCAACGTAGTGCCCGCCCGCCCACCCGCCAGCTCGTTTCGTCGGTTAGCTTA
1491862 G
709 G
* ** * **
1491863 GCATACGGACTTCATTCCCAGTCTAAGTTCAGACCAGATTGAGGGTTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGAACGGACCAGACCGAGGGTTGCG
1491913 TTAGCAGGAT
Statistics
Matches: 683, Mismatches: 64, Indels: 27
0.88 0.08 0.03
Matches are distributed among these distances:
703 3 0.00
704 262 0.38
705 186 0.27
706 123 0.18
707 9 0.01
708 2 0.00
709 1 0.00
717 97 0.14
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (709 bp):
GCATACGGAGTTCATTCCCAGTCTAAGAACGGACCAGACCGAGGGTTGCGACAACACATGCTGGC
CTCGGGCATGTGCTAGTGCCGCAATTTTCTTCATCGAGGCACCATGCAGCGCGGAGAACCTGACC
GACGGCATTGGGGTTCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACACGATGTACGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACCCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACT
TTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTAGCTGAATTTTTTTATACATGCCA
AAAAAATACAAGGATAACGTATACCAAGTTTGGGGACAAAAATCCTTCCGAAAAAATTTTAAAAA
ATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
GAAATATGAAGATGTGCCTAAACCCACATACCAACCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCCGGCCAACGTAGTGCCCGCCCGCCCACCCGCCAGCTCGTTTCGTCGGTTAGCTTAG
Found at i:1492928 original size:26 final size:26
Alignment explanation
Indices: 1492892--1492942 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1492882 TGACTTAGGG
*
1492892 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAATCTAAGC
1492918 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
1492943 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGC
Found at i:1493335 original size:891 final size:890
Alignment explanation
Indices: 1491159--1493872 Score: 3490
Period size: 891 Copynumber: 3.1 Consensus size: 890
1491149 GTTGGCTTAG
* * *
1491159 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGTCCGAGGGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * *
1491224 CTCGGGCATGTTCTAGTGCCGTAATTTTCTTCATCGAGGCACCAT--C--G---C-CGGAGAACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCGAGCATCGCGGAGAACC
* * * * *
1491281 TGACCGGCGGCATTGGGGTTTCGATGATCTGGGGGCCGGGGGGGTGTGCGCACATGATGTACGAT
131 TGACCGTCGGCATTGGGGTTCCGACGATCAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGAT
* * * *
1491346 GGGTGCTGGTACTTGGCCCTTATTTTGGCCCGCTATCCCTCATCAAA-CTCGAGAACCCACACCC
195 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
*
1491410 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
1491475 ACACTTTTTTCAAATGGTTGA-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATAC
325 ACACTTTTTTCAAATGG-TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
1491539 ATGCCAACAAAAATACAAGGATAACG-ATACCAAGTTTGGGGCCAAAA-ATCCTTTCCAAAAAAT
389 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-AC-TTCCAAAAAAT
* * * * *
1491602 TTTAAAAAATCTCGAACCGCAAAATTTTCAAAAATCATGAAAAATAGAAAACGATTCGCATTGCC
452 TTTAAAAAATCTCGAATCGTAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTATTGCC
1491667 ATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
517 ATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
1491732 GCACGTAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATTGAT-CAGTGGCTTGCGCA
582 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGCTTGCGCA
* * *
1491796 TCCCGTCTCTCCGGCCAGCGTAGTGCCTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTAGCTT
646 TCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCC-CC-GCTCGTTTCGTCGGTTGGCTT
* * * *
1491861 AGGCATACGGACTTCATTCCCAGTCTAAGTTCAGACCAGATTGAGGGTTGCGTTAGCAGGATCGA
705 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGA
* * * *
1491926 CAGCATGCAGAGGGGGACCTTGCCGATCCCCGGCTTGTGCATCTCGCCCCTCTGGCCGACTGAGC
770 TAGCACGCAGAGGGGGACC-GGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGC
*
1491991 ACCCGCACGCTCGTTTCGTGGGTTG-CTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
1492047 G-AT-C-G-G---A----C---C----A---GA-CA-A---AGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
** * * *
1492086 CTCGATCATGTGCTGGTACCGCATTTTTCTTCGACGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-C-GAGCATCG-CGGAGA
* * * * *
1492151 ACCTGATCGGT-GACATTAGGGTTCCAACGATCAAGGGGGCCGGGGCGGTTGTGCACACATGATG
128 ACCTGA-CCGTCGGCATTGGGGTTCCGACGATC-AGGGGGCCGGGG-GG-TGTGCGCACATGATG
*
1492215 TGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
189 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
*
1492280 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
254 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
1492345 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
319 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *** *
1492410 TGTGGATGCCAA-AAAAAGTACAAGGATCACGTCTAATTAGATTGGGGCCAAAACAACTTCCAAA
384 TGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACAACTTCC-AA
* * *
1492474 AAAATTTTAAAAAATCTTGAATCGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
447 AAAATTTTAAAAAATCTCGAATCGTAAAA-ATTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
1492539 TTTGCCATGAAACTTCACGTGAAGGTTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATG
511 ATTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1492604 GCATTGCCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
576 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
1492669 GCGGATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCG-CCCC-CTCG-TTCGTCAGTTGGCTTA
641 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTA
* * * * * * *
1492731 GGCATACGAAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAAGATCGGT
706 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGAT
* * * * * *
1492796 AGCACGTAGAGGGGGACTCGGTCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
771 AGCACGCAGAGGGGGAC-CGGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCG
** *
1492861 CCCGCACGCTCGTTTCGT-TATTGACTTAGGGATACGGAGTTCATTCCCAGTCTAA
835 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1492916 GCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
1492981 CTCGGGCATATGCTGGTGTCGCATTTTTCTTTGTCGGGGCACCATCGCCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CG-AGCATCG-CGGAGA
* *
1493046 ACCTGACCGTCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGG-GTGCGCAGATGATGTGC
128 ACCTGACCGTCGGCATTGGGGTTCCGACGATC-AGGGGGCCGGGGGGTGTGCGCACATGATGTGC
** * *
1493109 GATGGGTGCTGGTACTTGGCCCTTATATCAGCCCCCTATCCCTCTTTAAACCTTGAGAACTCACA
192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* * * *
1493174 ACCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGGCTGAAATG
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
1493239 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* ** *
1493304 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTGCTTTCGAAAAAA
387 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACAAC-TTCCAAAAAA
* ** * *
1493369 TTTTAAAAAATCCCGAATCGTAAAAATTTCAAAAAATTGTGAAAAATAGAAAATGAGTCGTCTTG
451 TTTTAAAAAATCTCGAATCGTAAAAATTTC-AAAAATCATGAAAAATAGAAAACGAGTCGTATTG
* * *
1493434 CCAAGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
515 CCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * *
1493499 TGGCTTGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGC
580 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
1493564 ATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCACCCGTCCGCCCGCTCGTTTCATCGGCTGGCT
645 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCG-CC-CCCGCTCGTTTCGTCGGTTGGCT
* * * *
1493629 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAAGGTTGCAGTAGTAGGATCG
704 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCG
* * *
1493694 ATAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCCACTGAG
769 ATAGCACGCAGAGGGGGA-CCGGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAG
* * * *
1493759 TGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGTGTTCATTCCCAGTCTAA
833 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1493817 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCA
1493873 GGATCAGCAA
Statistics
Matches: 1571, Mismatches: 188, Indels: 121
0.84 0.10 0.06
Matches are distributed among these distances:
862 57 0.04
865 1 0.00
866 2 0.00
867 2 0.00
868 4 0.00
869 169 0.11
870 8 0.01
871 2 0.00
872 3 0.00
873 34 0.02
874 22 0.01
875 70 0.04
876 160 0.10
877 46 0.03
878 173 0.11
879 2 0.00
880 1 0.00
881 1 0.00
883 1 0.00
884 1 0.00
885 1 0.00
886 1 0.00
887 3 0.00
888 1 0.00
890 6 0.00
891 443 0.28
892 9 0.01
893 2 0.00
894 7 0.00
895 111 0.07
897 1 0.00
898 3 0.00
899 4 0.00
900 137 0.09
901 83 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCGAGCATCGCGGAGAACC
TGACCGTCGGCATTGGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACAACTTCCAAAAAATTTTA
AAAAATCTCGAATCGTAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTATTGCCATGA
AACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
TCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGCAGGATCGATAGCACGCAGA
GGGGGACCGGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1493829 original size:26 final size:26
Alignment explanation
Indices: 1493791--1493843 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1493781 GTTGACTTAG
* *
1493791 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1493817 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1493843 G
1 G
1493844 ATCAGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1493951 original size:185 final size:185
Alignment explanation
Indices: 1493632--1494057 Score: 563
Period size: 185 Copynumber: 2.3 Consensus size: 185
1493622 GCTGGCTTAG
* * * *
1493632 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGAAGGTTGC-AGTAGTAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGA-TAGCAGGATCGAT
* * *
1493696 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCCACTGAGTG
65 AGAACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCCACTGAGCG
* * * *
1493761 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGTGTTCATTCCCAGTCTAA
130 CCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1493817 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATC-G-A
* * ** * **
1493882 -A-AACGTAGAGGGGGACTCGGTCGATCCCCGGCTTGCGCAT-CTCGCCCCTCTGGTCGGCTGAG
64 TAGAACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCCACTGAG
*
1493944 CGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCTAGTCTAA
128 CGCCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1494002 GCATACGTAGTTCATTCCCAGTCAAAGATCGGACCGGACCGAGGGTTGCGATAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCA
1494058 CATGCTGGGC
Statistics
Matches: 210, Mismatches: 27, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
184 2 0.01
185 204 0.97
186 3 0.01
187 1 0.00
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAGCAGGATCGATA
GAACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCCACTGAGCGC
CCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1495255 original size:908 final size:907
Alignment explanation
Indices: 1493888--1495598 Score: 2671
Period size: 908 Copynumber: 1.9 Consensus size: 907
1493878 AGCAAAACGT
* ** * * * *
1493888 AGAGGGGGACTCGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGTCGGCTGAGCGCCCGCAC
1 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCCGCTGAGCGCCCGCAC
* * * * *
1493953 GCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGTAGTTCATT
66 GCTCATTTCGTGCGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
1494018 CCCAGTCAAAGATCGGACCGGACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCTTGTGCTGG
131 CCCAGTCAAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGG
* *
1494083 TGTCACATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGTCGGAGAATCTGAACGACGGCAT
196 TGCCACATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAACGACGGCAT
* *
1494148 TGGGGTTCCGACGATCGAGGGGGCCGTGGGGGTGTGCGCACATGATTTGCGATGGGTACTAGTAC
261 TGGGGTTCCGACGATCGAGGGGGCCGTGGGAGTGTGCGCACATGATGTGCGATGGGTACTAGTAC
* *
1494213 TTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCA
326 TTGGCCCTTATATTGGCCCCATATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
1494278 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGTCACTTTTTTAA
391 TTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTTAA
* * * **
1494343 ATGGTCACAAAATTTTGTACAC-TACGAGTTTTTAGCTGAATTTTTTTGTGCATTTCAACAAAAA
456 ATGGTCACAAAATCTTGTACACGT-CAAGTTTTTAGCTGAATTTTTTTATGCATGCCAA-AAAAA
* *
1494407 TAGAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATTCCC
519 TACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA-TCCC
**
1494472 GAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTCGCCATGAAACTTCAC
582 GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTCGCCATGAAACTTCAC
* * **
1494537 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACGGCATTGGCATGCAGAAAT
647 GTGAAGGCTTAAGGGACCATTGTAGGAATTTAAAAGCCATAAAAACGGCATTGGCACACAGAAAT
* * *
1494602 ATGAAGATATGCC-TAAACCCACCTA-CA-ACCCTATCGATCCGCGGCTT-GTACATCCCGTCTC
712 ATGAAGATAT-CCTTAAACCCACCTACCACACCCTATCGATCCACAGCTTCCT-CATCCCGTCTC
1494663 TCTGGTCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCA
775 TCTGGTCGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCA
1494728 TACAGAGTTCATTCCCAGTCTAAGATCAGCTCGGACTGAAGGTTGCAGTAGTAGGATCGATAGCA
840 TACAGAGTTCATTCCCAGTCTAAGATCAGCTCGGACTGAAGGTTGCAGTAGTAGGATCGATAGCA
1494793 TGC
905 TGC
*
1494796 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCCGCTGAGTGCCCGCAC
1 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCCGCTGAGCGCCCGCAC
* *
1494861 GCTCATTTTGTGCGTTAACTTAGGCATACGGTGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
66 GCTCATTTCGTGCGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * *
1494926 CCCAGTCGAAGATCGGACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGG
131 CCCAGTCAAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGG
* *
1494991 TGCCACATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
196 TGCCACATTTTTCTTCGCT-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAACGACGGCA
* * * * *
1495055 TTGGGGTTTCGACGATCGGGGGGGCCG-GGGAGTGTGCGCACATGATGTGCGATTGGTGCTGGTA
260 TTGGGGTTCCGACGATCGAGGGGGCCGTGGGAGTGTGCGCACATGATGTGCGATGGGTACTAGTA
*
1495119 CTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
325 CTTGGCCCTTATATTGGCCCCATATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
1495184 ATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTTC
390 ATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTT-
1495249 AAATGGTCACAAAATCTTGTACACGTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAA
454 AAATGGTCACAAAATCTTGTACACGTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAA
* * * *
1495314 TACAAGGATCACGTCTACCAAGTTTGGGCTAAAACTCTTTCCAATAAAATTTTAAAAAATCTCGA
519 TACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGA
* ** * *
1495379 ATCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
584 ACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTCGCCATGAAACTTCACGT
* * *
1495444 GAAGGCTTTAGGGACCATTGTAGGAATTTAAAAGCCATACAAATGGCATTGGCACACAGAAATAT
649 GAAGGCTTAAGGGACCATTGTAGGAATTTAAAAGCCATAAAAACGGCATTGGCACACAGAAATAT
*
1495509 GAAGATGTCCTTAAACCCACCTACCACCACCCTATCGATCCACAGCTTCCTCATCCCGTCTCTCT
714 GAAGATATCCTTAAACCCACCTACCA-CACCCTATCGATCCACAGCTTCCTCATCCCGTCTCTCT
*
1495574 GGTCGGCGTAGTGCCCGGCCGCCCG
778 GGTCGGCGTAGTGCCCGCCCGCCCG
1495599 CCCGTCTGTT
Statistics
Matches: 726, Mismatches: 69, Indels: 16
0.90 0.09 0.02
Matches are distributed among these distances:
904 2 0.00
905 140 0.19
906 33 0.05
907 184 0.25
908 365 0.50
909 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (907 bp):
AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCCGCTGAGCGCCCGCAC
GCTCATTTCGTGCGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCAAAGATCGGACCGGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGG
TGCCACATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAACGACGGCAT
TGGGGTTCCGACGATCGAGGGGGCCGTGGGAGTGTGCGCACATGATGTGCGATGGGTACTAGTAC
TTGGCCCTTATATTGGCCCCATATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTTAA
ATGGTCACAAAATCTTGTACACGTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAAC
CGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTCGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTAGGAATTTAAAAGCCATAAAAACGGCATTGGCACACAGAAATATGA
AGATATCCTTAAACCCACCTACCACACCCTATCGATCCACAGCTTCCTCATCCCGTCTCTCTGGT
CGGCGTAGTGCCCGCCCGCCCGTCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACAGA
GTTCATTCCCAGTCTAAGATCAGCTCGGACTGAAGGTTGCAGTAGTAGGATCGATAGCATGC
Found at i:1496428 original size:731 final size:725
Alignment explanation
Indices: 1494874--1496335 Score: 2088
Period size: 731 Copynumber: 2.0 Consensus size: 725
1494864 CATTTTGTGC
* * * * ** *
1494874 GTTAACTTAGGCATACGGTGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCGAAGAT
1 GTTAGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGAAT-C-GAG--CATTCGGA-CCGAAGAT
* * * * * *
1494939 CGGACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTC
61 CGGA-CAGACCGAGGGATGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTC
* ** * * * *
1495004 TTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGACG
125 TTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTAACCGACGACATTGGGGTTCCGACG
* * * *
1495069 ATCGGGGGGGCCGGGGAGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATT
190 ATAGGGGGGG-CGGGGAGTGTACGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATT
*
1495134 GGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACA
254 GGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTCGAGATTTTACA
*
1495199 GGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
319 GGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAAT
1495264 CTTGTACACGTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAATACAAGGATCACGTC
384 CTTGTACACGTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAATACAAGGATCACGTC
* * * *
1495329 TACCAAGTTTGGGCTAAAACTCTTTCCAATAAAATTTTAAAAAATCTCGAATCGTAAAAAGTTTT
449 TACAAAGTTGGGGCTAAAACTCTTTCCAATAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTC
* *
1495394 GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTTAGGGAC
514 AAAAATCATGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTTAGGGAC
* *
1495459 CATTGTAGGAATTTAAAAGCCATACAAATGGCATTGGCACACAGAAATATGAAGATGTCCTTAAA
579 CATTGTAGGAATTTAAAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTCCTTAAA
* * *
1495524 CCCACCTACCACCACCCTATCGATCCACAGCTTCCTCATCCCGTCTCTCTGGTCGGCGTAGTGCC
644 CCCACCTACCACCACCCTATCGATCAACAGCTTCCGCATCCCGTCTCTCTGGTCAGCGTAGTGCC
1495589 CGGCCGCCCGCCCGTCT
709 CGGCCGCCCGCCCGTCT
* * * *
1495606 GTTAGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATATGGAGCTCATTCCTGATCTAAGAT
1 GTTAGCTTAGGCATACGGAGTTCATTTCCAGTCTAAG-A-ATCGAG--CATT-CGGACCGAAGAT
* **
1495671 CGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTC
61 CGGA-CAGACCGAGGGATGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTC
* *
1495736 TTTGCCGGGGCACCATCGTCGGAGCATCACCGGAGATCCTAACCGACGACATTGGGGTTCCGACG
125 TTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTAACCGACGACATTGGGGTTCCGACG
*
1495801 ATAGGGGCGGG-GGGGGGTGTACGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATT
190 ATAGGGG-GGGCGGGGAGTGTACGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATT
* * *
1495865 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAACAGCATTTGAGATTTTACA
254 GGCCCCCTATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTCGAGATTTTACA
* *
1495930 GGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAAT
319 GGTTTGCTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAAT
* * *
1495995 CTTGTACACGTCGAGTTTTTAGTTGAA-TTTTTTAGTGCATGCCAAAAAAAATACAAGGATCATG
384 CTTGTACACGTCAAGTTTTTAGCTGAATTTTTTTA-TGCATGCC-AAAAAAATACAAGGATCACG
* *
1496059 TCTACAAAGTTCGGGGCTAAAACTCTTTCTGAA-AAAATTTTGAAAAATCTCGAACCGTAAAAAG
447 TCTACAAAGTT-GGGGCTAAAACTCTTTC-CAATAAAATTTTAAAAAATCTCGAACCGTAAAAAG
* * *
1496123 TTTCAAAAATTATGAAAAACAGCAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTTAG
510 TTTCAAAAATCATGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTTAG
* **
1496188 GGACCATTGTAGGAATTTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGC
575 GGACCATTGTAGGAA-TTTAAAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGT-C
* * * * * *
1496253 C-TAAACCCACCTACCACCACCCTCTTGATCAACGGCTTGCGCATCCCGTCTCTTTTGTCAGCGT
638 CTTAAACCCACCTACCACCACCCTATCGATCAACAGCTTCCGCATCCCGTCTCTCTGGTCAGCGT
1496317 AGTGCCC-GCCGCCCGCCCG
703 AGTGCCCGGCCGCCCGCCCG
1496336 CCCACTCGTT
Statistics
Matches: 655, Mismatches: 65, Indels: 19
0.89 0.09 0.03
Matches are distributed among these distances:
730 7 0.01
731 205 0.31
732 198 0.30
733 136 0.21
734 107 0.16
735 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (725 bp):
GTTAGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGAATCGAGCATTCGGACCGAAGATCGGAC
AGACCGAGGGATGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCC
GGGGCACCATCGTCGGAGCATCACCGGAGAACCTAACCGACGACATTGGGGTTCCGACGATAGGG
GGGGCGGGGAGTGTACGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCC
TATACCTCATCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTCGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTCTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTAC
ACGTCAAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAATACAAGGATCACGTCTACAAAG
TTGGGGCTAAAACTCTTTCCAATAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
ATGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTTAGGGACCATTGTA
GGAATTTAAAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTCCTTAAACCCACCT
ACCACCACCCTATCGATCAACAGCTTCCGCATCCCGTCTCTCTGGTCAGCGTAGTGCCCGGCCGC
CCGCCCGTCT
Found at i:1497564 original size:875 final size:875
Alignment explanation
Indices: 1495663--1499916 Score: 5593
Period size: 875 Copynumber: 4.8 Consensus size: 875
1495653 TCATTCCTGA
* * *
1495663 TCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCG
1 TCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * * * * *
1495728 TATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCACCGGAGATCCTAACCGACGACATTGGGG
66 TATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
* * * * * *
1495793 TTCCGACGATAGGGGCGG-GGGGGGGTGTACGCACATGATGTGCGATGGGTGCCGGTACTTGGCC
131 TTCCGATGATCGGGG-GGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
1495857 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAACAGCATTTGAG
195 CTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
1495922 ATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGT
259 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * *
1495987 CACAAAATCTTGTACACGTCGAGTTTTTAGTTGAATTTTTTAGTGCATGCCAAAAAAAATACAAG
324 CACAAAATCTTGTACACTTCTAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * * * * *
1496052 GATCATGTCTACAAAGTTCGGGGCTAAAACTCTTTCTGAAAAAATTTTGAAAAATCTCGAACCGT
389 GATCA-GACTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCAT
** * * *
1496117 AAAAAGTTTCAAAAATTATGAAAAACAGCAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGG
453 AAAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
1496182 CTTTAGGGACCATTGTAGGAATTTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAG
518 CTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
* * * * *
1496247 ATGTGCCTAAACCCACCTACCACCACCCTCTTGATCAACGGCTTGCGCATCCCGTCTCTTTTGTC
582 ATGTGCCTAAACCCACCT---ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTC
* * *
1496312 AGCGTAGTGCCCG-CCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
644 GGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* *** ** * * *
1496376 TT-CCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGTATTAGGATCGGCAGCATGTAGAGGGGG
709 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGG
* * * * * *
1496440 ACCCG-CCGATCACC-AGCTTGTGCTTCCCGACCCTCTGGCCGGTTGAGCGCCCACACGCTCGTT
774 ACCCGACCGATCCCCGAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
*
1496503 TCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAG
839 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * *
1496540 TCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCACATGCTAGGATCGGGCATGTGCTGGTGTCG
1 TCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * ** * ** *
1496605 CATTTTTCTTCATCGGGGCATGATCACCGGAGCATCGCCGGAGAACCTGATTGGTGGCATTGGGG
66 TATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
* *
1496670 TTCCGATGATCGGGGGGGCC-GGGGGTGTGCACACATGATGTGCGATGAGTGTTGGTACTTGGCC
131 TTCCGATGATC-GGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCC
1496734 CTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
195 CTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
1496799 TTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
260 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * **
1496864 ACAAAATCTTGTACACTTCTAGTTTTTTGCT-AACTTTTTTTGTGCATTACAACAAAAATACAAG
325 ACAAAATCTTGTACACTTCTAGTTTTTAGTTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAG
* **
1496928 GATCATGACTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTATAAAAAATCTCGAACCGC
389 GATCA-GACTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCAT
* * * *
1496993 AAAAAGCTTT-GAAAATCGTAAAAAAAAGAAAACGAGTCGTCTTGCCATAAAACTTCAAGTGAAG
453 AAAAAG-TTTCAAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
1497057 GCTTAAGTGG-CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAA
517 GCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA
* * * *
1497121 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTCCACATCCCGTCACTCTGGCCGG
581 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGG
* * * * * **
1497186 CGTAGTGCCCACACGCCCGCCCGCCCGCTCATTTCATCGGCTGGCTTAGGCATACAAAGTTCATT
646 CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* *
1497251 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAAGATCGGTAGCACGGAGAGGGGGAC
711 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGAC
* * * *
1497316 CCGACCGATCCCCGA-CTTGCGTATCCCGCCGCTCTGGCCGGCTGAGCGCTCGCACGCTCATTTC
776 CCGACCGATCCCCGAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
1497380 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
841 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * *
1497415 TCTAAGATCGGATCAGACCGAGGGTTGTGGTAGCACATGCTAGGATCGGGCATGTGCTGGTGCCG
1 TCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * **
1497480 TATTTTTCTTTGTCGGGGCACGATCGCCGGAGCATCACCGGAGAACCTGACTGGTTGCATTGGGG
66 TATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
* *
1497545 TTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
131 TTCCGATGATCG-GGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
1497610 CTTATATTGGCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGA
195 CTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
1497675 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTC
260 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
1497739 ACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTTGTGCATGCCAACAAAAATACAAGG
325 ACAAAATCTTGTACACTTCTAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * * * *
1497804 ATCACATCTATCATGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTAAAAAATCTGGAACCACA
390 ATCAGA-CTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCATA
*
1497869 AAAAGTTTCAAAAATCGTGAAAAATAA-AAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
454 AAAAGTTTCAAAAATCGTGAAAAA-AAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
1497933 CTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGA
518 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* * *
1497998 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTAGTCGACG
583 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCG
* * * * *
1498063 TAGTGCCCGCCCACCCGTCCGCCCGTTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCC
648 TAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* *** * *
1498128 CAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAGTAGGATC-GTAGCACGCAGAGGGGTACCC
713 CAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCC
** * * * *
1498192 GGTCGAT-CCCTAGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAACGCCCGCATGCTCGTTTCGT
778 GACCGATCCCCGAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
*
1498256 GGGTTGACTTAGGCATACGGAGTTTATTCCCAG
843 GGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * * *
1498289 TCTAAGATCAGACCGGATCGAGTGTTGTGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCTG
1 TCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * *
1498354 TATTTTTCTTCGCCGGGGCACCA-CGCTGGAGCATTGTCGAAGAACCTGACCGGCGGCATTGGGG
66 TATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
*
1498418 TTCCG-TGATCGGGGGGGCCGAGGGTGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGG
131 TTCCGATGATC-GGGGGGCCG-GGG-GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGG
* * * *
1498482 CCCATATATGGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAACAGCATTTGA
193 CCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * * *
1498547 GATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGTCACTTTTTTTAAATGA
258 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
1498612 TCACAATATCTTGTACACTT-TGAGTTTTTAGTTGAATTTTTTTGTGGATGCCAAAAAAAATACA
323 TCACAAAATCTTGTACACTTCT-AGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * *
1498676 AGGACCACATCTACCAAGTTTGGGGCCAAAACTCCTTGC-GAAAAAATTTTAAAAAATCCCAAAC
387 AGGATCAGA-CTACCAAGTTTGGGGCCAAAACTCCTT-CTGAAAAAATTTTAAAAAATCTCGAAC
* * * *
1498740 CATAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACATCACGTGA
450 CATAAAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * *
1498805 AGGCCTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAATAGCATTGGCACGTAGAAATATGA
515 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
* * * *
1498869 AGATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCTTGCGCATCCCGTCTCACTGGTCA
580 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCG
* * * * * *
1498934 GTGTACTGCCCGCCCGTCTGCCCGCGCGCTCGTTTCGTCGGTTGGCTTAGCCATACGGAGTTCAT
645 GCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * *
1498999 TCCCAGTCTAAGATCGGACCAAACCAAGGGTTGCGGTAGCAGGAAT-GATAGCACACAGAGGGTG
710 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGG-ATCGGTAGCACGCAGAGGGGG
* * * * *
1499063 ACCCGACTGATCCCTG-CCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGGGCCCGCACGCTCGTT
774 ACCCGACCGATCCCCGAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* *
1499127 TTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAG
839 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
**
1499164 TCTAAGCATACAGAGTTCATCTCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGC
1 --T---C-T--A-AG---A--TC-G-----GATC--A---GACCGAGGGTTGTGGCAGCACATGC
* * * * *
1499229 TGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGGACCATCGTCGGAGCATCGTCG
41 TGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCG
*
1499294 GAGAACCTGACCGGCGGCATTGAGGTTCC-AGTGATCGGGGGGCCGGTGGGGGTGTGCACACATG
106 GAGAACCTGACCGGCGGCATTGGGGTTCCGA-TGATCGGGGGGCC-G-GGGGGTGTGCACACATG
* *
1499358 ATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
168 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAA
* ** * * *
1499423 CTGACACCCCCTTAAAGAGTGTTTGAGATTTTGCAGGTTTGCTGCCAGTAGCTATTAAAGTGTTT
232 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * * * *
1499488 GAAATGGGGTCACTTTTTTTAAATGATCACAAAATCTTGTACACTT-TGTGTTTTTAGCTCAATT
297 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCT-AGTTTTTAGTTGAATT
* * * *
1499552 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTGACAAAACTCCTTCC
361 TTTTTGTGCATGCCAACAAAAATACAAGGATCA-GACTACCAAGTTTGGGGCCAAAACTCCTTCT
* * * * * *
1499617 GAAAAAATTTTAAAAAATCACGAAGCTTAAAAAGTTTCAAAAATCGTGAAAAATAGCAAATGAGT
425 GAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGAGT
*
1499682 CGTCTTGCCATGAAACTTCACGTGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
490 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
1499747 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCACCCTATCGATCCA
555 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT---ACCACCCTATCGATCCA
* *
1499812 CGACTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCG
617 CGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCG
* * *
1499877 TCTGTCGGCTTAGGCATACGGCGTTCATTCCCAGTCTAAG
682 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1499917 CATACGAAGT
Statistics
Matches: 2972, Mismatches: 342, Indels: 97
0.87 0.10 0.03
Matches are distributed among these distances:
872 58 0.02
873 93 0.03
874 560 0.19
875 981 0.33
876 453 0.15
877 174 0.06
878 4 0.00
880 1 0.00
881 1 0.00
883 1 0.00
884 2 0.00
887 1 0.00
889 2 0.00
895 3 0.00
900 65 0.02
901 96 0.03
902 323 0.11
903 45 0.02
906 109 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (875 bp):
TCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
TATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
TTCCGATGATCGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCC
TTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
CAAAATCTTGTACACTTCTAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
TCAGACTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCATAAA
AAGTTTCAAAAATCGTGAAAAAAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAG
TGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGAC
CGATCCCCGAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAG
Found at i:1499179 original size:26 final size:25
Alignment explanation
Indices: 1499143--1499194 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
1499133 GTTGACTTAG
1499143 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCA-TCCCAGTCTAA
*
1499169 GCATACAGAGTTCATCTCAGTCTAA
1 GCATACAGAGTTCATCCCAGTCTAA
1499194 G
1 G
1499195 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATCCCAGTCTAA
Found at i:1499594 original size:902 final size:891
Alignment explanation
Indices: 1497394--1499916 Score: 3509
Period size: 874 Copynumber: 2.8 Consensus size: 891
1497384 GTTGACTTAG
* *
1497394 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGTAGCACATGCTAGG
1 GCATAC-GAGTTCA-T-CCAGTCTAAGATC-GA-C-GACCGAGGGTTGTGGCAGCACATGCTGGG
* * * * **
1497459 ATCGGGCATGTGCTGGTGCCGTATTTTTCTTTGTCGGGGCACGATCGCCGGAGCATCACCGGAGA
60 CTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGTCGGAGA
* ** * *
1497524 ACCTGACTGGTTGCATTGGGGTTCCGACGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTG
124 ACCTGACCGGCGGCATTGGGGTTCCG-TGATCG-GGGGGCCGGGGGGGTGTGCACACATGATGTG
* *
1497588 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCTATCCCTCATCAAACCTCGAGAACTCACA
187 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACA
*
1497653 CCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
252 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
1497718 GGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTTGT
317 GGGTCACTTTTTTTAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTGT
* * *
1497782 GCATGCCAACAAAAATACAAGGATCACATCTATCATGTTTGGGGCCAAAACTCCTTCTAAAAAAA
382 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAA
** * *
1497847 TTTTAAAAAATCTGGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTG
446 TTTTAAAAAATCACGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
*
1497912 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGCAT
511 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
1497977 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
576 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * ** * *
1498042 ATCTCGTCTCTCTAGTCGACGTAGTGCCCGCCCACCCGTCCGCCCGTTCGTTTCGTCAGTTGGCT
641 ATCCCGTCTCTCTGGTCG-CGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCAGTTGGCT
* ** * *
1498107 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAACAGTAGGATCG
705 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAACAGCAGGATCG
* *
1498172 TAGCACGCAGAGGGGTACCCGGTCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAAC
770 TAGCACACAGAGGGGTACCCGCTCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAAC
* * *
1498237 GCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAA
835 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
1498294 G-AT-C-AG---A-CC-G-----GAT-------CGAGTGTTGTGGCAACACATGCTGGGCTCGGG
1 GCATACGAGTTCATCCAGTCTAAGATCGACGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGG
* * *
1498339 CATGTGCTGGTGCTGTATTTTTCTTCGCCGGGGCACCA-CGCTGGAGCATTGTCGAAGAACCTGA
66 CATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGC-GGAGCATCGTCGGAGAACCTGA
* *
1498403 CCGGCGGCATTGGGGTTCCGTGATCGGGGGGGCCGAGGGTGGTGTGCACACATGATGTGTGATGG
130 CCGGCGGCATTGGGGTTCCGTGATC-GGGGGGCCG-GGGGGGTGTGCACACATGATGTGCGATGG
* *
1498468 GTGCTGGTACTTGGCCCATATATGGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
193 GTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* *
1498533 TAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGTCA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGTCA
* *
1498598 CTTTTTTTAAATGATCACAATATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTGTGGATGC
323 CTTTTTTTAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTGTGCATGC
* *
1498663 CAAAAAAAATACAAGGACCACATCTACCAAGTTTGGGGCCAAAACTCCTTGCGAAAAAATTTTAA
388 CAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAA
* * * *
1498728 AAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGA
452 AAAATCACGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGA
* * * *
1498793 AACATCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAATAGCATTGGCAC
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
1498857 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCTTGCGCATCCCG
582 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * * *
1498922 TCTCACTGGTCAGTGTACTGCCCGCCCGTCTGCCCGCGCGCTCGTTTCGTCGGTTGGCTTAGCCA
647 TCTCTCTGGTC-GCGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCA
* ***
1498987 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGGTTGCGGTAGCAGGAAT-GATAGC
711 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAACAGCAGG-ATCG-TAGC
* * **
1499051 ACACAGA-GGGTGACCCGACT-GATCCCT-GCCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGGG
774 ACACAGAGGGGT-ACCCG-CTCGATCCCTAG-CTTGCGCATCCCGCCCCTCTGGCAGGCTGAACG
*
1499113 CCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
836 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
**
1499169 GCATACAGAGTTCATCTCAGTCTAAGATCGAACCGGACCGAGGGTTACGGCAGCACATGCTGGGC
1 GCATAC-GAGTTCATC-CAGTCTAAGATCG-A-C-GACCGAGGGTTGTGGCAGCACATGCTGGGC
* *
1499234 TCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGGACCATCGTCGGAGCATCGTCGGAGAA
61 TCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGTCGGAGAA
*
1499299 CCTGACCGGCGGCATTGAGGTTCCAGTGATCGGGGGGCCGGTGGGGGTGTGCACACATGATGTGC
125 CCTGACCGGCGGCATTGGGGTTCC-GTGATCGGGGGGCCGG-GGGGGTGTGCACACATGATGTGC
* *
1499364 GGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTGACA
188 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACA
** * * *
1499429 CCCCCTTAAAGAGTGTTTGAGATTTTGCAGGTTTGCTGCCAGTAGCTATTAAAGTGTTTGAAATG
252 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
1499494 GGGTCACTTTTTTTAAATGATCACAAAATCTTGTACACTTTGTGTTTTTAGCTCAATTTTTTTGT
317 GGGTCACTTTTTTTAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTGT
* * *
1499559 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGTGACAAAACTCCTTCCGAAAAAA
382 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAA
* * *
1499624 TTTTAAAAAATCACGAAGCTTAAAAAGTTTCAAAAATCGTGAAAAATAGCAAATGAGTCGTCTTG
446 TTTTAAAAAATCACGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
*
1499689 CCATGAAACTTCACGTGCAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
511 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
1499754 TGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCACCCTATCGATCCACGACTTG
576 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCT---ACCACCCTATCGATCCACGGCTTG
* *
1499819 CGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCTGTCG
638 CGCATCCCGTCTCTCTGGTC-GCGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCAGTTG
*
1499884 GCTTAGGCATACGGCGTTCATTCCCAGTCTAAG
702 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1499917 CATACGAAGT
Statistics
Matches: 1431, Mismatches: 146, Indels: 86
0.86 0.09 0.05
Matches are distributed among these distances:
872 12 0.01
873 38 0.03
874 390 0.27
875 324 0.23
876 4 0.00
877 1 0.00
879 2 0.00
882 1 0.00
883 1 0.00
884 4 0.00
885 1 0.00
889 1 0.00
890 5 0.00
893 1 0.00
896 2 0.00
898 1 0.00
899 2 0.00
900 65 0.05
901 98 0.07
902 324 0.23
903 45 0.03
906 109 0.08
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
GCATACGAGTTCATCCAGTCTAAGATCGACGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGG
CATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGTCGGAGAACCTGAC
CGGCGGCATTGGGGTTCCGTGATCGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGTCACTT
TTTTTAAATGATCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAA
TCACGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGTCGCGTAGTGCCCGCCCGTCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCAAACCAAGGGTTGCAACAGCAGGATCGTAGCACACAGA
GGGGTACCCGCTCGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAACGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:1499919 original size:26 final size:26
Alignment explanation
Indices: 1499890--1499942 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1499880 GTCGGCTTAG
** *
1499890 GCATACGGCGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
1499916 GCATACGAAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
1499942 G
1 G
1499943 ATCAGATAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGCCTAA
Found at i:1501381 original size:710 final size:709
Alignment explanation
Indices: 1499916--1501872 Score: 3056
Period size: 709 Copynumber: 2.8 Consensus size: 709
1499906 CCCAGTCTAA
* * ** * * * * *
1499916 GCATACGAAGTTCATTCCCAGCCTAAGATCAGATAGGATCGAGTGTTGTGGTAGCAGATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATTCTGGG
** * *
1499981 CTCGGGCATGTGCTGGTGCTACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGCATCGTCGGAGA
* * * ** * *
1500046 ACCTGACCGACGGCATTGGGGTTCCGGTGATCAGGGGGCCGGGGGTGGTGTGCACACATGATGTG
131 ACCTGACCGGCTGCAATGGGGTTCCGACGATCGGGGGGCC-GGGG-GGTGTGCGCACATGATGTG
* *
1500111 TGATGGGTGCTGGAACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
1500175 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
1500240 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* ** * *
1500305 TGCATGCCAACAAAAATACAAGCATCACGTCTACCAAGTTTGGG-GTAAAAATCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCATTCCGAAAAA
* *
1500369 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
454 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
1500434 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGACA
* * *
1500499 TTGGCAAGTAGAAGTATGAAGATGTGATTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCAAGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
1500564 CATCCAGTCTCTCTGGCCGGCGTAGTTCCCGCCTGCTCGCTCGTTTCGTCGGTTGGCTTAT
649 CATCCAGTCTCTCTGGCCGACATAGTTCCCGCCTGCTCGCTCGTTTCGTCGGTTGGCTTAC
* *
1500625 GCATACGCAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATTCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATTCTGGG
** * * * *
1500690 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGACACCATCGCCGGAGCATCGCCTGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGCATCGTCGGAGA
*
1500755 ACCTGACCGGCTGCAATGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTAC
131 ACCTGACCGGCTGCAATGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
1500820 GATGGGTGCTGGTACTTGGCCCTTATCTTGGCCCCCTCTCCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
1500885 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
1500950 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAT
* ** *
1501015 GCGTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTTGTTCTGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCATTCCGAAAAAA
* *
1501080 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * *
1501145 CCATTAAACTTCATGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGACAT
*
1501210 TGG-AATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
585 TGGCAA-GCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
1501274 CATCCAGTCTCTCTGGCCGACATAGTTCTCGCCTGCTCGCTCGTTTCGTCGGTTGGGTTAC
649 CATCCAGTCTCTCTGGCCGACATAGTTCCCGCCTGCTCGCTCGTTTCGTCGGTTGGCTTAC
* *
1501335 GCATACGTAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATTCTAGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATTCTGGG
* * *
1501400 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGACACCATCGTCAGAGCATCGTCGGACA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGCATCGTCGGAGA
*
1501465 ACCTGACCGGCTGCAATGAGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
131 ACCTGACCGGCTGCAATGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
1501530 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCGCATCAAACCTCGAGAAGTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
1501595 CCCCTTAAAGGGCATTTGAGATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
1501660 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
* * * * *
1501725 CATGCCAACAAAAATACAAGGATGACGTCGACTAAGTTTGGGACCAAAACCCATTCCAAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCATTCCGAAAAAAT
* * * ** * *
1501790 TTTTAAAAATCTCGAACCGTGAAAAGTTTTGAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGC
456 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
1501855 CATGAAACTTCACGTGAA
521 CATGAAACTTCACGTGAA
1501873 ATGGCATTGG
Statistics
Matches: 1137, Mismatches: 107, Indels: 8
0.91 0.09 0.01
Matches are distributed among these distances:
708 46 0.04
709 686 0.60
710 405 0.36
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (709 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATTCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCTGCAATGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCATTCCGAAAAAAT
TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGACATT
GGCAAGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCAGTCTCTCTGGCCGACATAGTTCCCGCCTGCTCGCTCGTTTCGTCGGTTGGCTTAC
Found at i:1504673 original size:308 final size:308
Alignment explanation
Indices: 1504107--1504727 Score: 996
Period size: 308 Copynumber: 2.0 Consensus size: 308
1504097 CCCTTAAAGA
1504107 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
1504172 TCAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAA
* * *
1504237 AAATACAAGCATCACGTCTACCAAGTTTGGGGTAAAAATCCTTCCGAAAAAATTTTAAAAAATCC
131 AAATACAAGCATCACGTCGACCAAGTTTGGGGCAAAAACCCTTCCGAAAAAATTTTAAAAAATCC
*
1504302 TGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAATCGTCTTGCCATGAAACTTCA
196 TGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAATCGTCTTGCCATGAAACTTCA
*
1504367 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACG
261 CGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAACG
*
1504415 GCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTT
1 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
1504479 TCAAATGGTCACAAAATCTTGTACACTTTGCGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAA
* * * * *
1504544 AAATACAAGGATGATGTCGACTAAGTTTGGGGCCAAAACCCATTCC-AAAAGAATTTTAAAAAAT
131 AAATACAAGCATCACGTCGACCAAGTTTGGGGCAAAAACCC-TTCCGAAAA-AATTTTAAAAAAT
* ** * * *
1504608 -CTCGAACCGTGAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCCTTAAACT
194 CCT-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAATCGTCTTGCCATGAAACT
*
1504672 TCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
258 TCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAACG
1504723 GCATT
1 GCATT
1504728 GGCACGTAGA
Statistics
Matches: 288, Mismatches: 22, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
307 112 0.39
308 176 0.61
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (308 bp):
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAA
AAATACAAGCATCACGTCGACCAAGTTTGGGGCAAAAACCCTTCCGAAAAAATTTTAAAAAATCC
TGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAATCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAACG
Found at i:1505918 original size:26 final size:26
Alignment explanation
Indices: 1505882--1505932 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
1505872 TGACTTAGGG
1505882 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
1505908 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
1505933 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:1506313 original size:891 final size:887
Alignment explanation
Indices: 1504415--1506854 Score: 2816
Period size: 891 Copynumber: 2.8 Consensus size: 887
1504405 CATAAAAACG
* **
1504415 GCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTT
1 GCATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
1504479 TCAAATGGTCACAAAATCTTGTACACTTTGCGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* * ** * * *
1504544 AAATACAAGGATGATGTCGACTAAGTTTGGGGCC-AAAACCCATTCC-AAAAGAATTTTAAAAAA
131 AAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCC-TTCCGAAAA-AATTTTAAAAAA
* *** ** * * * * *
1504607 TCTCGAACCGTGAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCCTTAAACT
194 TCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACT
* * *
1504672 TCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
259 TCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAG
* * * * * *
1504737 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
324 AAACATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCAATGACTTACGCATCCCGTCTC
* * * * * * * *
1504802 TCTGGTCGGCATAGTGCCCGCC-CGCTCACCCGCTCGTTTCA-TCGGTTGGCTTAGGCATACGGA
389 TCTAG-CGACATAGCGCCAGCCAC-C-CGCCCGCCCGTTT-AGTCAGTTGGCTTAGGCATACTGA
* * *** * * * * * *
1504865 GTTCATTCACAGTCTAAGATTGGACCAG-ACCGAGGGTTGCAATAGTAGGATCGGCAGCACGTAG
450 GTTCATTCCCAGTCTAACATCACACC-GCACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAA
* * * * * * * *
1504929 AGGAGGACCCGACCGATCCCTGGCTTGCGCATC-C-CGCCTGTCTGGTCGGCTGAACGCCCGTAA
514 AGG-GG----GA-C--T--C-AGCTTGTGCATCTCAC-CCT-TCTGGCCCGCTGAGCACCCGCAC
* * * *
1504992 GCCCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG-AT-C-G-G---A--
566 GCTCATTTCGTGGGTTGACTTAGGCATACGAAATTCATTCCCAGTCTAAGCATACGGAGTTCATT
**
1505048 --C---C---GA----ACT-----GAGGGTTACGGTAGCACATGCTAGGCTCGGGCATGTGCTGG
631 CCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGG
* *
1505096 TGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCAGAGAACCTGACCGGCGGCAT
696 TGCAGCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCAGAGAACCTGACCGGCGGCAT
* * * * *
1505161 TGGGGTTCCGGCGATCGGGGGGGTCGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
761 TGGGGTTCCGGAGATCGGGGGGGACGGGGGGGTGTGCACACATGATGTGCGATGGATGCTGGTAC
* *
1505226 TTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
826 TTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCATAAGAACTCACACCCCCTTAAAGA
*
1505288 GCATTTAAGATTTTACAGGTTTGCTACCAGTAGGCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * * *
1505353 TCAATTGGTCACAAAATCTTGTATACTTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
* *
1505418 AAATAAAAGGATCACCTCTACCAAGTTTGGGGCTAAAAATCCTTCCGAAAAAATTTT-AAAAATC
131 AAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
* **
1505482 CCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAATGAGTTGTCTTGCCATGAAACTTC
196 CCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTC
*
1505547 ACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
261 ACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAA
* * * *
1505612 ATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCTGTCTCTC
326 ACATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCAATGACTTACGCATCCCGTCTCTC
* * * *
1505677 T-G-G-C-TAGCG-TAG-TACCCGCCCGCCCGTTTCGTTAGTTGGCTTAGGCATA-TGGAGTTCA
391 TAGCGACATAGCGCCAGCCACCCGCCCGCCCGTTTAGTCAGTTGGCTTAGGCATACT-GAGTTCA
* * * ** * * * *
1505735 TTCCCAGTCTAAGATCAGACCGGATTGAGGGTTTCGATAGCAGGATCGATAGCACGCAGAGGGGG
455 TTCCCAGTCTAACATCACACCGCACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAAAGGGGG
* *
1505800 ACCCGATTGATCCCCAGCTTGTGCGTTCTGC-CCC-TCTGG-CCGACTGAGCACCCGCACGCTCG
520 A--C------T---CAGCTTGTGC-ATCT-CACCCTTCTGGCCCG-CTGAGCACCCGCACGCTCA
* * *
1505862 TTTCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
571 TTTCGTGGGTTGACTTAGGCATACGAAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * *
1505927 TCTAAGATCGGACTGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCAG
636 TCTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCAG
** *
1505992 CATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGG
701 CATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGG
*
1506057 TTCTGGAGATC-GGGGGGACGGGGGGGGTGTGCACACATGATGTGCGATGGATGCTGGTACTTGG
766 TTCCGGAGATCGGGGGGGAC-GGGGGGGTGTGCACACATGATGTGCGATGGATGCTGGTACTTGG
* *
1506121 CCCTTCTATTGGCCCCCTATCCCTCATCAAACCATAAGAACTCACA-CCCCTTAAAGA
830 CCATTATATTGGCCCCCTATCCCTCATCAAACCATAAGAACTCACACCCCCTTAAAGA
* * *
1506178 GCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
1 GCATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
*
1506243 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTGCATGCCAAAAA
66 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAA
* * * *
1506308 AAAATACAAGGATCTCATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAAT
130 AAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAAT
* * * * ** * *
1506373 CTCGTACCATAAAAATTTTTGAAAATCGTGAAACATAAAAAACGAGTCATCTTGCCATGAAACTT
195 CCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTT
* *
1506438 CACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGAATTGGCATGCAGA
260 CACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGA
* * *
1506503 AACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAATGGCTTATGCATCCCGTCTCT
325 AACATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCAATGACTTACGCATCCCGTCTCT
* * * *
1506568 CTAGCCGACATAGTGCCCGCCCACCCGCCCGCTCGTTTAGTCGGTTGGCTTAGGCATACTGAGTT
390 CTAG-CGACATAGCGCCAG-CCACCCGCCCGCCCGTTTAGTCAGTTGGCTTAGGCATACTGAGTT
* * *
1506633 CATTCCCAGTCTAACATTACACTGCACCGAGGGTTGCGACAGCAGGATCGACAGCACGTAAAGGG
453 CATTCCCAGTCTAACATCACACCGCACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAAAGGG
* *
1506698 GGACTCGGCTTGTGCATCTCACCCTTCTGGCCCGCTGAGCGCCCGCACGCTCATTTCGTGGGTTG
518 GGACTCAGCTTGTGCATCTCACCCTTCTGGCCCGCTGAGCACCCGCACGCTCATTTCGTGGGTTG
* * *
1506763 ACTTAGGCATACGAAATTCATTCCCAGTCTAAGCGTACGGAGATCATTCCCAGTCTAAGATCGAA
583 ACTTAGGCATACGAAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
*
1506828 CTAGACCGAGGGTTAC-AGCAGCACATG
648 CTGGACCGAGGGTTACGA-CAGCACATG
1506855 GTGACCGACG
Statistics
Matches: 1353, Mismatches: 155, Indels: 102
0.84 0.10 0.06
Matches are distributed among these distances:
860 2 0.00
861 2 0.00
864 5 0.00
865 154 0.11
866 8 0.01
867 5 0.00
868 7 0.01
869 2 0.00
870 1 0.00
872 2 0.00
873 235 0.17
874 110 0.08
875 10 0.01
876 1 0.00
879 1 0.00
882 2 0.00
886 3 0.00
887 1 0.00
888 7 0.01
889 124 0.09
890 137 0.10
891 248 0.18
892 183 0.14
893 1 0.00
895 1 0.00
896 1 0.00
897 4 0.00
898 2 0.00
900 93 0.07
901 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (887 bp):
GCATTTAAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
AAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATC
CCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTC
ACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCATGCAGAA
ACATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCAATGACTTACGCATCCCGTCTCTC
TAGCGACATAGCGCCAGCCACCCGCCCGCCCGTTTAGTCAGTTGGCTTAGGCATACTGAGTTCAT
TCCCAGTCTAACATCACACCGCACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAAAGGGGGA
CTCAGCTTGTGCATCTCACCCTTCTGGCCCGCTGAGCACCCGCACGCTCATTTCGTGGGTTGACT
TAGGCATACGAAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTG
GACCGAGGGTTACGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGTCG
GGGCACCATCACCAGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGAGATCGGGG
GGGACGGGGGGGTGTGCACACATGATGTGCGATGGATGCTGGTACTTGGCCATTATATTGGCCCC
CTATCCCTCATCAAACCATAAGAACTCACACCCCCTTAAAGA
Found at i:1507620 original size:26 final size:26
Alignment explanation
Indices: 1507591--1507643 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1507581 GTTTGCTTAG
* *
1507591 GCATACGAAGTTTATTCCTAGTCTAA
1 GCATACGAAGTTCAATCCTAGTCTAA
*
1507617 GCATACGGAGTTCAATCCTAGTCTAA
1 GCATACGAAGTTCAATCCTAGTCTAA
1507643 G
1 G
1507644 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCTAGTCTAA
Found at i:1510290 original size:26 final size:26
Alignment explanation
Indices: 1510261--1510313 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1510251 ATTGACTTAG
*
1510261 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1510287 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1510313 G
1 G
1510314 ATCTGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1510419 original size:905 final size:894
Alignment explanation
Indices: 1508479--1511919 Score: 4557
Period size: 905 Copynumber: 3.8 Consensus size: 894
1508469 GTTGACTTAG
* * * * * *
1508479 GCATACGGAGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTGCCGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCTGACCAAGGGTTGCGGCAGCACATGCTGGG
* ** * *
1508544 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* *
1508609 ACCTGACCGACGGCATTAGGGTTCCGGCGATCGGGAGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGG-GGG-CGGGGGGGTGTGCGCACATGATGTG
* * *
1508674 GGATGGGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCGC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
1508739 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
1508804 GGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATATTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
* *
1508868 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAA
* ** *
1508933 ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTTTAAAATAGAAAACGAGTAGTCTT
453 ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
1508998 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCCTAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
1509063 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
1509128 CATCCCGTCTCTCTAGCCGGTGTAGTGCTCGCACGCCCGCCCACCCATCCGCCCGCTCGTTTCGT
648 CATCCCGTCTCTCTGGCCGGCGTAGTG--C-C-CGCCCG-TC-CGCA--CGCACGCTCGTTTCGT
* * *
1509193 TGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCGAACTGAGGGTTGCGGT
705 CGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAG-A-CGAAC-GAGGGTTGTGGT
* * *
1509257 AGTAGGATCGG-CAG-CA---CGACCTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
767 AGTAGGATCGGACAGAGAGGGAGACC-CGACCGATCCCCGGCTTGCGCATCCCG-CCCTTTGGCC
* * * *
1509317 GGTTGAGCGCCTC-CACGCTCGTTTCGTGGGTTGACTTGGGCATTCGGAGTTCATTCCCAGTCTA
830 GGTTGAGCGCC-CGCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
1509381 A
894 A
* * * * * * * * * * *
1509382 GGATACAAAGTTCATTCCCAATCTAAGATCGAATCGGATCGAGGGTTACAGCAGCACATGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCTGACCAAGGGTTGCGGCAGCACATGCTGGG
* ** * * * * *
1509447 CTCGGGCATGTGCTTGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGAACCGTCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* ** *
1509512 ACCTGACTGGTGGTATTGGGGTTCCGACGATCGGTGGGGTCGGGAGGGGTTGTGCGCACATGATG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGG-CGGG-GGGG-TGTGCGCACATGATG
** * ** * * *
1509577 TAAGATGGGTGGTGGTACTTGGCTATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGCACCC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
*
1509642 ACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
1509707 ATGGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
* ** * *
1509772 TGTGAATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGATGCCAAAACTCTTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* * * *
1509837 AATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCT
452 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
1509902 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
1509967 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
1510032 GTATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCCGCACACACGCTCGTTTCATCGGTTGG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCACGCACGCTCGTTTCGTCGGTTGG
* *
1510097 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTTGTAGTAGGAT
712 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-C-GAACGAGGGTTGTGGTAGTAGGAT
* * * ** *
1510162 CGGCAACATGTAGAGGGAGACCCGACCAATCCCCGGCTTGCACATCCCGCACTTATGGTAGGATG
775 CGG--ACA-G-AGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTT-TGGCCGGTTG
* * *
1510227 AGCACCCGCATGCTCATTTCGTCGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 AGCGCCCGCACGCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1510287 GCATACAGAGTTCATTCCCAGTCTAAGATCTGACCTGACCAAGGGTTGCGGCAGCACATGCTGCG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCTGACCAAGGGTTGCGGCAGCACATGCTGGG
** **
1510352 CTCGAGG-ATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
66 CTCG-GGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * *
1510416 AACCTGACCGACGGCATTGGGGTT-CGACGATCGGGGGGGCCGGGGGGTGCGCGTACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCGGGGGGGTGTGCGCACATGATGTG
*
1510480 CGATGGGTGCTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
*
1510545 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
1510610 GGGGGCACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTTAAATTTGTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
* * * * *
1510675 TGCATGCCAACAAAAGTGCAAGGATCATGTCTACAAAGTTTGGGGACAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAA
* * * *
1510740 ATTTTAAAAAATCTCAAACCGCAAAAAGTATT-AAAAATCATGAAAAATAGAAAATGAGTCGTCT
453 ATTTTAAAAAATCCCGAACCACAAAAAGT-TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
** **
1510804 TTTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGAAATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
1510869 ATTGGCATGCAGAAATATGAAGATGTGCCTAAAGCCACCTACCACCCTATCGATCCGCGGCTTGT
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
1510934 GCATCCCGTCTCTCTGGCCGGCGTAGT----G--C-T-CGC-C-CA--CTCGTTTCGTGGGTTGG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCACGCACGCTCGTTTCGTCGGTTGG
* * * * * *
1510987 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGGATGGACCGAGGGTTGTGGCAGCAAGAT
712 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA-GA-CGAACGAGGGTTGTGGTAGTAGGAT
* * * * **
1511052 CGGTAGCACGCAGAGGGGGACCCGATCGATCCCCAGCTTGCGTATCCCGCCCCTTTCACCGGTTG
775 CGG-A-CA-G-AGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTTTGGCCGGTTG
* *
1511117 AGCGCCCGCACGCTCATTTCGTTGGTTGA-TGTAGGCATACGGGGTTCATTCCCAGTCTAA
835 AGCGCCCGCACGCTCATTTCGTCGGTTGACT-TAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * *
1511177 GCGTATGGAGTTCATTCCCAGTGTAAGATGGGA-CTGGACCAAGGGTTGCGACAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCT-GACCAAGGGTTGCGGCAGCACATGCTGG
* * * *
1511241 GCTCGGGCATATGCTGGTGCCACATTTTTCTTCACCGGTGCACCATCGCCAGAGCATCGCTGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * **
1511306 AACCTGACCGATGGCATTGAGGTTCCGACGATTGGGGGAGCCAGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCGGGGGGGTGTGCGCACATGATGTG
1511371 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
1511436 ACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTCTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1511501 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
* * * *
1511566 TGCATGCCAACAAAAATACAAGGATCATGTCTACGAAGTTTCGGGCCAAAACTCCTTTCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAA
* ** * *
1511631 ATTTTTAAATGTCCCGAA-CAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
453 ATTTTAAAAAATCCCGAACCA-CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
1511695 TGCCATGAAACTTCACGTGACGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * * *
1511760 ATTGCCACACAGAAATATGAAGATGTGCCTAAACCC-CCCACCACCCTATCGATCCATGACTTGC
582 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
1511824 GCATCCCTTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-CCCTGCCCTCTCGTTCCGTCGGTTG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCAC-GCACGCTCGTTTCGTCGGTTG
1511887 GCTTAGGCATAC-AGAGTTCATTCCCAGTCTAAG
711 GCTTAGGCATACGA-AGTTCATTCCCAGTCTAAG
1511920 CATACGGAGT
Statistics
Matches: 2228, Mismatches: 264, Indels: 94
0.86 0.10 0.04
Matches are distributed among these distances:
889 6 0.00
890 351 0.16
891 415 0.19
892 5 0.00
893 1 0.00
894 4 0.00
895 1 0.00
896 3 0.00
897 78 0.04
898 5 0.00
899 4 0.00
900 3 0.00
901 294 0.13
902 212 0.10
903 146 0.07
904 21 0.01
905 567 0.25
906 112 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCTGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATT
TTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCACGCACGCTCGTTTCGTCGGTTGGCTTA
GGCATACGAAGTTCATTCCCAGTCTAAGATCAGACGAACGAGGGTTGTGGTAGTAGGATCGGACA
GAGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTTTGGCCGGTTGAGCGCCCGCAC
GCTCATTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1511922 original size:26 final size:26
Alignment explanation
Indices: 1511893--1511945 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1511883 GTTGGCTTAG
1511893 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
1511919 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1511945 G
1 G
1511946 ATGGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1512821 original size:26 final size:26
Alignment explanation
Indices: 1512791--1512843 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1512781 GTTGACTTAG
*
1512791 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCAATCCCAGCCTAA
*
1512817 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGCCTAA
1512843 G
1 G
1512844 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGCCTAA
Found at i:1513732 original size:26 final size:26
Alignment explanation
Indices: 1513696--1513746 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1513686 TTGACTTAGT
*
1513696 CATATGGAGTTCATTCCAAGTCTAAG
1 CATACGGAGTTCATTCCAAGTCTAAG
*
1513722 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCAAGTCTAA
1513747 AATCGGATCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCAAGTCTAAG
Found at i:1514182 original size:904 final size:900
Alignment explanation
Indices: 1511871--1514626 Score: 3861
Period size: 904 Copynumber: 3.1 Consensus size: 900
1511861 CCCCTGCCCT
* * * *
1511871 CTCGTTCCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTG
1 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* *
1511936 CCAGTCTAAGATGGGATCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCAGGCATGTGCTGGT
66 CCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGT
* *
1512001 GTCGCATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATT
131 GCCGCATTTTTCTTCCT-AGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATT
* * * *
1512066 GAGGTTCCGACGATTGGGGGAGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTT
195 GGGGTTCCGACGATAGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
1512131 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTGAAGAACTCACACCCCCTTAAAGAGCATT
259 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTG-AGAACTCACACCCCCTTAAAGAGCATT
1512196 TGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAA
323 TGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAA
1512261 TGGTCACCAAATCATGTACAGTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCGAACAAAAATG
388 TGGTCACCAAATCATGTACAGTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCGAACAAAAATG
*
1512326 CAAGGATCATGTCTACCAAGTTTGATGCCAAAACTCTTTCCGAAAAAATTTTAAAAACTCTCAAA
453 CAAGGATCATGTCTACCAAGTTTGATGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCTCAAA
* * ** *
1512391 CTGGAAAAAGTTTCGAAAATCGTGAAAAATACAAAACGAGTCCACTTGGCATGAAACTTCACGTG
518 CTGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
1512456 AATGCTTCAGGGACCTTTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGAAATATG
583 AATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGAAATATG
* *
1512521 AAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTGCACATCCTGTCTCTCTGGCC
648 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCC
* * * * *
1512586 GGCGTAGTGCCCGCCCG-CCTG--C-G-TGCTCATTTCATCGGTTAGCTCAGGCATACGGAGTT-
713 GGCGTAGTGCCCGCCCGTCC-GCCCGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* ** * * ** * *
1512645 ATTCCCAGTCTAAGATTAGATCGGACAGAGTGTTGCAGTAGCAAGATTTGTAGCATGCA-AAGGG
777 ATTCCCAGTCTAAGATCAGGCCAGACAGAGGGTTGTGGTAGCAAGATTGGTAGCATACAGAA-GG
* * * *
1512709 GGTCCC-AGCCGATCCCCGACTTGCTCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
841 GGACCCGA-CCGATCCCCGACTTACACATCCAGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * * * *
1512769 TTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGCCTAAGCATACAGAGTTCAATC
1 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
1512834 CCAGTCTAAGATCGGA-CTAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGC-TGGTGCTG
66 CCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCAT-GTGCTG
* * ** *
1512897 GTGCCGCATTGTTCTTTGCC-AGGGCACCATCGTCGGAGCATCATCGGAGAACTTGACCGATGCC
129 GTGCCGCATTTTTC-TT-CCTAGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGC
* * *
1512961 ATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
192 ATTGGGGTTCCGACGAT-AGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* *
1513026 ACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAG
255 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTTGAGAACTCACACCCCCTTAAAGAG
1513091 CATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTT
319 CATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTT
1513156 CAAATGGTCACCAAATCATGTACAGTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCGAACAAA
384 CAAATGGTCACCAAATCATGTACAGTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCGAACAAA
1513221 AATGCAAGGATCATGTCTACCAAGTTTGATGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCT
449 AATGCAAGGATCATGTCTACCAAGTTTGATGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCT
* *
1513286 CAAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCATGCCATGAAACTTCA
514 CAAACTGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
1513351 CGTGAATGCTTAAGGGACCATTGTATTAATTTACAAGCCATAAAAATTACATTGGCATGCAGAAA
579 CGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGAAA
** * *
1513416 TACAAAGATGTGCCTAAACCCACCAACCACCCTATCGAACCACGGCTTGCGCATCCTGTCTCTCT
644 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCT
* *
1513481 GGCCGGCGTACTGCCCGCCCGTCCGCCCGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAG
709 GGCCGGCGTAGTGCCCGCCCGTCCGCCCGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * *
1513546 TTCATTCCCAGTCTAAGATCAGGCCAGACCGAGGGTTGTGGTAGCAAGATTGGCAGCACACAGAA
774 TTCATTCCCAGTCTAAGATCAGGCCAGACAGAGGGTTGTGGTAGCAAGATTGGTAGCATACAGAA
* * * *
1513611 GGGGACCCGACCGATCCCCGGCTTACGCATCCTGCCCCTTTGGCCGGCTGAGCGCCCGCACG
839 GGGGACCCGACCGATCCCCGACTTACACATCCAGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* ** *
1513673 C-CTGTTTCGTGGGTTGACTTAGTCATATGGAGTTCATTCCAAGTCTAAGCATACGGAGTTCATT
1 CTC-GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * *
1513737 CCCAGTCTAAAATCGGATCGGATCGAGCGATGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGG
65 CCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGG
* * * * * *
1513802 TGCCGCATTTTTCTTCACTAAGGCACCATC-ACTAGATCTTCGTCGGAGAACCTGACCGGCGGCA
130 TGCCGCATTTTTCTTC-CTAGGGCACCATCGTC-GGAGCATCATCGGAGAACCTGACCGGCGGCA
* * *
1513866 TTGGGGTTTCGACGATAGAGGGGGCCGGGGGGCTGTGCACACATGATGTGCGATGGGTGCAGGTA
193 TTGGGGTTCCGACGATAG-GGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
1513931 CTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACTTCGAGAACTCACACCTCTTTAAAGAGC
256 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTT-GAGAACTCACACCCCCTTAAAGAGC
* * * *
1513996 ATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGGCTGAAATGGGGACACTTTTTTC
320 ATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTC
* * * * * *
1514061 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAA
385 AAATGGTCACCAAATCATGTACAGTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCGAACAAAA
* * * * ** * *
1514126 ATACAAGGATCACGTCGATCAAGTTTGGGGCCAAAACTCCTTT-CGAAAATATTTTAAGAAATCT
450 ATGCAAGGATCATGTCTACCAAGTTTGATGCCAAAACT-CTTTCCGAAAAAATTTTAAAAAATCT
* * ** * * * *
1514190 CGAACCGTGAAAAGTTTTGAAAATCATGAAAAATGGAAAAGGAGTCGTCTTGCCATGAAACTTCA
514 CAAACTGCAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * * * * *
1514255 TGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACGTAGAAA
579 CGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGAAA
* * * *
1514320 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTTTGTCT
644 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCT
* * *
1514385 GGTCGGCGTAGTGCCCGCCCGTCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
709 GGCCGGCGTAGTGCCCGCCCGTCCGCCCGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * *
1514450 TTCATTCCTAGTCTAAAATC-GGACCAGACTGAGGATTGTGGTAGCAAGATCGATAGCATACAG-
774 TTCATTCCCAGTCTAAGATCAGG-CCAGACAGAGGGTTGTGGTAGCAAGATTGGTAGCATACAGA
* * * * *
1514513 AGGATGACCCGGCCAATCCCTGACTTACACATCCAGCCCCTCTGGCAGGCTGAGCGCCCGCACG
838 AGG-GGACCCGACCGATCCCCGACTTACACATCCAGCCCCTCTGGCCGGCTGAGCGCCCGCACG
* * *
1514577 CTCATTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGC
1 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
1514627 TTGCCTGCCC
Statistics
Matches: 1648, Mismatches: 182, Indels: 50
0.88 0.10 0.03
Matches are distributed among these distances:
897 2 0.00
898 180 0.11
899 493 0.30
900 6 0.00
901 1 0.00
902 2 0.00
903 49 0.03
904 905 0.55
905 10 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGT
GCCGCATTTTTCTTCCTAGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGCGGCATTG
GGGTTCCGACGATAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
CCCTTATATTGGCCCCCTATCCCTCATCAAACTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGG
TCACCAAATCATGTACAGTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCGAACAAAAATGCAA
GGATCATGTCTACCAAGTTTGATGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCTCAAACTG
CAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAT
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATGCAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGC
GTAGTGCCCGCCCGTCCGCCCGGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGGCCAGACAGAGGGTTGTGGTAGCAAGATTGGTAGCATACAGAAGGGGACC
CGACCGATCCCCGACTTACACATCCAGCCCCTCTGGCCGGCTGAGCGCCCGCACG
Found at i:1514815 original size:236 final size:236
Alignment explanation
Indices: 1514396--1514862 Score: 594
Period size: 236 Copynumber: 2.0 Consensus size: 236
1514386 GTCGGCGTAG
* * * * *
1514396 TGCCCGCCCGTCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAG
1 TGCCCGCCCGCCTGCCCACCCGCTCGTTTCATCGGTTGGCTCAGGCATACGGAGTTCATTCCCAG
* * ** * * * *
1514461 TCTAAAATCGGACCAGACTGAGGATTGTGGTAGCAAGATCGATAGCATACAGAGGATGACCCGGC
66 TCTAAAATCAGACCAGACCGAGGATTACGGTAGCAAGATCGACAGCACACAAAGGAGGACCCGGC
* *
1514526 CAATCCCTGACTTACACATCCAGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
131 CAATCCCTGACTTACACATCCAGCCCCTCTAGCAGGCTGAGCGCCCACACGCTCATTTCGTGGGT
1514591 TGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCTTGCC
196 TGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCTTGCC
* **
1514632 TGCCCGCCCGCCTGCCTACCCGCTCGTTTCATCGGTTGGCTCAGGCATACGGTTTTCATTCCCAG
1 TGCCCGCCCGCCTGCCCACCCGCTCGTTTCATCGGTTGGCTCAGGCATACGGAGTTCATTCCCAG
** * * * * * * *
1514697 TCTAGGATCAGATCGGACCGAGGGTTACGGTAGCAGGATTGGCAGCACACAAATGAGGACCCGGC
66 TCTAAAATCAGACCAGACCGAGGATTACGGTAGCAAGATCGACAGCACACAAAGGAGGACCCGGC
* * * * ** * *
1514762 CGAT-CCTCGACTTGCGCATCCCGCCCCTCTAGTTGGCTGAGCGCCCACACGCTCGTTTTGTGGG
131 CAATCCCT-GACTTACACATCCAGCCCCTCTAGCAGGCTGAGCGCCCACACGCTCATTTCGTGGG
*
1514826 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
195 TTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGC
1514863 ATACGTAGTT
Statistics
Matches: 194, Mismatches: 36, Indels: 2
0.84 0.16 0.01
Matches are distributed among these distances:
235 3 0.02
236 191 0.98
ACGTcount: A:0.19, C:0.31, G:0.26, T:0.24
Consensus pattern (236 bp):
TGCCCGCCCGCCTGCCCACCCGCTCGTTTCATCGGTTGGCTCAGGCATACGGAGTTCATTCCCAG
TCTAAAATCAGACCAGACCGAGGATTACGGTAGCAAGATCGACAGCACACAAAGGAGGACCCGGC
CAATCCCTGACTTACACATCCAGCCCCTCTAGCAGGCTGAGCGCCCACACGCTCATTTCGTGGGT
TGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCTTGCC
Found at i:1514872 original size:26 final size:26
Alignment explanation
Indices: 1514835--1514887 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1514825 GTTGACTTAG
1514835 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1514861 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1514887 G
1 G
1514888 ATGGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1516521 original size:879 final size:876
Alignment explanation
Indices: 1514650--1517269 Score: 3338
Period size: 879 Copynumber: 3.0 Consensus size: 876
1514640 CGCCTGCCTA
* ** *
1514650 CCCGCTCGTTTCATCGGTTGGCTCAGGCATACGGTTTTCATTCCCAGTCTAGGATCA-GATCGGA
1 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGGATCGGA
** * * * * * *
1514714 CCGAGGGTTACGGTAGCAGGATTGGCAGCACACAAATGAGGACCCGGCCGATCCTCGACTTGCGC
65 CCGAGGGTTGTGGCAGCAGGATCGGCA-CACATAGAGGGGGACCCGGCCGATCCTCGACTTGCGC
* * * * *
1514779 ATCCCGCCCCTCTAGTTGGCTGAGCGCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGGA
129 ATCCCGCCCCTCTGGCT-GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * *
1514844 GTTCATTCCCAGTCTAAGCATACGTAGTTCATTCCCAGTCTAAGATGGGATCAGACCGAGGGTTA
193 GTTCATTCCCAGTCTAAGCGTAC--AGTTCATT-CTAGTCT-AGATCGGACCGGACCGAGGGTTA
* * * * *
1514909 CGACAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCATCGCCGAGGCACCATCGT
254 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTCTTCGCCG-GGCACTATCGC
* *
1514974 CGGAGCATCGTCGAAGAACCTGACCGACGGCAATGGGGTTCCT-GCGATCGGGGGGGTCGGGGGG
317 CGGAGCATCG-CGAAGAA-C-GA-CGA-GGCATTGGGGTT-CTGGCGATC-GGGGGGCCGGGGGG
* *
1515038 TGTGCGCACATAATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
375 TGTGCGCACATGATGT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
1515103 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
439 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
1515168 AATAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTT
504 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
1515233 TT-GCTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
569 TTAGC-TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * *
1515297 AAAACTCCTTTCAAAAAAATTTTAAAAAAT-CTGAACC-TCAAAAAGTTTCGAAGATCGTGAAAA
633 AAAACTCCTTTCGAAAAAATTTTAAAAAATCCTGAACCAT-AAAAAGTTTCAAAAATCGTGAAAA
* * **
1515360 AGAGAAAACGAGTCATCTTGCCATCAAACTTCACGTGAAAACTTAAGGGACCATTGTATGAATTT
697 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
**
1515425 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
762 ACAAGCCATAAAAATCACATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
** *
1515490 TATCGATCCACGGCTT-TCGCATCCCGTATCTCTGGCTAGCGTAGTGCCCG
827 TATCGATCCACGGCTTGT-GCATCCCGTATCTCTGGCCGGCGCAGTGCCCG
* * * *
1515540 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTTATTCCCAGTCTAAGATAGGATCGGAT
1 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGATCGGAC
* * * * *
1515605 CGAGGGTGGTGGCAGCAGGATCGACAGCACATAGAGGGGGACCCGACCGATCCTCGGCTTGCACA
66 CGAGGGTTGTGGCAGCAGGATCGGCA-CACATAGAGGGGGACCCGGCCGATCCTCGACTTGCGCA
* * * * * * *
1515670 TTCTGCCCTTCTGGCCTGCTGAGCACCCGCACGCTCATTTCATGGTTTGAATTAGGCATACGGAG
130 TCCCGCCCCTCTGG-CTGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* **
1515735 TTCATTCCCAGTCTAAGCGTACAAAGTTCATTCGTAGTCTGAGATCGGACCGGACTGAGGGTTGT
194 TTCATTCCCAGTCTAAGCGTAC--AGTTCATTC-TAGTCT-AGATCGGACCGGACCGAGGGTTAC
*
1515800 GGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTCTCTTCGCCAGGGCACTATCGCC
255 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT-TCTTCGCC-GGGCACTATCGCC
* * * *
1515865 GGAG-AAC-C-TA-AA-G-GGAGGCATTGGCGTTCTGGCGATCGGGGGGCCGGGGGGGTGTGCGC
318 GGAGCATCGCGAAGAACGACGAGGCATTGGGGTTCTGGCGATCGGGGGGCC-GGGGGGTGTGCGC
* **
1515924 ACATGATGTACGATAGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
382 ACATGATGT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
1515989 GAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTCTGCTGCTAGTAGCCATTAAAG
446 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
1516054 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
511 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* *
1516119 AATTTTTTTGTGCATGCCAACAAAAGTACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAACTCC
576 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * *
1516184 TTCCGAAAAAGTTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
641 TTTCGAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * * *
1516249 GAGTCTTCTGGCCATGAAACTTCATGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCAT
706 GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** *
1516314 AAAAATCACATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
771 AAAAATCACATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* *
1516379 ACGGCTTGTGCATCCCGTTTCTTTGGCCGGCGCAGTGCCCG
836 ACGGCTTGTGCATCCCGTATCTCTGGCCGGCGCAGTGCCCG
* *
1516420 CCCGCTCGTTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGATCAGAC
1 CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGATCGGAC
* * * * * *
1516485 CAAGGGTTGTGGCATCTGGATCGGC-CACAGTAGAGGGGGACCCGGCCAATCCCCGACGTGCGCA
66 CGAGGGTTGTGGCAGCAGGATCGGCACACA-TAGAGGGGGACCCGGCCGATCCTCGACTTGCGCA
* *
1516549 TCCCGCCCCACTGGCTGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAG
130 TCCCGCCCCTCTGGCTG-CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
1516614 ----TT--CA-T-T---CG--CAG-----TCTA----AGATCGGACCGGACCGAGGGTTACGGCA
194 TTCATTCCCAGTCTAAGCGTACAGTTCATTCTAGTCTAGATCGGACCGGACCGAGGGTTACGGCA
** * ** * *
1516657 GCACATATTGGGCTCGGCCATGTGCTGGTGCCATAATTTTCTTCGTCGGGGCACTATCACCGGAG
259 GCACATGCTGGGCTCGGGCATGTGCTGGTGCC-GCATTTTCTTCG-CCGGGCACTATCGCCGGAG
* * * * * * *
1516722 CATCGCAGGAGAACCTGACCAGCAGCATTGGGGTTCCGACGATTGGGGGGGCCAGGGGGTGTGCA
322 CATCGC-GAAGAA-C-GACGAG--GCATTGGGGTTCTGGCGA-TCGGGGGGCCGGGGGGTGTGCG
* * * * *
1516787 CACAGGATG-CGATGGGTGTTGGTACTTTGCCCTTATATTGACCCCCTATCCCTCATCAAACCTT
381 CACATGATGTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
*
1516851 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAG
446 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
1516916 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTGTTTAGCTG
511 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
1516981 AATTTTTCTGTGCATGCCAAAAAAAATACAAGCATCATGTCTACCAAGTTTGGGGCCAAAACTCC
576 AATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * * * * *
1517046 TTTCGAAAAAAATTTTAAAAAATCTTGAA-CAGCAAAAAGTTTAAAAAATAGTAAAAAATATAAA
641 TTTCG-AAAAAATTTTAAAAAATCCTGAACCA-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
1517110 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
704 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
1517175 ATAAAAA-CGACATTGGCAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAGCCTATC-A
769 ATAAAAATC-ACATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
1517238 TTCACAGCTTGCGTATCCCGTCTCTCTGGCCG
833 TCCACGGCTTGTGCATCCCGTATCTCTGGCCG
1517270 ACGTGCTGCT
Statistics
Matches: 1516, Mismatches: 184, Indels: 88
0.85 0.10 0.05
Matches are distributed among these distances:
853 75 0.05
854 7 0.00
855 1 0.00
857 1 0.00
858 4 0.00
859 2 0.00
861 1 0.00
862 268 0.18
863 163 0.11
864 35 0.02
865 9 0.01
866 1 0.00
868 2 0.00
871 1 0.00
872 1 0.00
873 2 0.00
875 2 0.00
878 16 0.01
879 371 0.24
880 271 0.18
881 2 0.00
882 1 0.00
885 2 0.00
886 1 0.00
887 1 0.00
889 7 0.00
890 267 0.18
891 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (876 bp):
CCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGATCGGAC
CGAGGGTTGTGGCAGCAGGATCGGCACACATAGAGGGGGACCCGGCCGATCCTCGACTTGCGCAT
CCCGCCCCTCTGGCTGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
CATTCCCAGTCTAAGCGTACAGTTCATTCTAGTCTAGATCGGACCGGACCGAGGGTTACGGCAGC
ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTCTTCGCCGGGCACTATCGCCGGAGCATC
GCGAAGAACGACGAGGCATTGGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGT
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
ATTTTAAAAAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATCACA
TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTG
CATCCCGTATCTCTGGCCGGCGCAGTGCCCG
Found at i:1518987 original size:26 final size:26
Alignment explanation
Indices: 1518958--1519036 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
1518948 GTTGAGTTAG
*
1518958 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
* *
1518984 GCATATGAAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
1519010 CCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
1519036 G
1 G
1519037 ATCGGACCGG
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:1519925 original size:25 final size:26
Alignment explanation
Indices: 1519888--1519937 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
1519878 GTTGACTTAG
**
1519888 GCATACGGTGTTCATT-CCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1519913 GCATACGAAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
1519938 TGATCGGATC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1520807 original size:26 final size:26
Alignment explanation
Indices: 1520778--1520830 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1520768 GTTGACTTAG
* *
1520778 GCATAAAGAGTTTATTCCCAGTCTAA
1 GCATAAAGAGTTCATTCCCAGTATAA
**
1520804 GCATACGGAGTTCATTCCCAGTATAA
1 GCATAAAGAGTTCATTCCCAGTATAA
1520830 G
1 G
1520831 ATCGTACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAAAGAGTTCATTCCCAGTATAA
Found at i:1522872 original size:903 final size:904
Alignment explanation
Indices: 1517304--1523080 Score: 7542
Period size: 897 Copynumber: 6.4 Consensus size: 904
1517294 CGTCGGGCAC
* *
1517304 CATCACCGGAGAACCTCACCGGCGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
1 CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
* * *
1517369 GCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCACTCATCAAACC
66 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
1517434 TTGAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAA
131 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
1517499 AGTGTCTGAAATGGGGACACATATTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
196 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
1517564 TGAAGTT-TTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAAC
261 TGAA-TTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * *
1517627 ACCTTCC-AAAAAATTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCGTTAAAAATAGAA
325 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * * *
1517691 AAGAAGTCGTCTTACCATGAAACATCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGC
390 AACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
1517756 CACAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
455 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
1517821 TCCACGGCTTGCGCAT-CCGTCTCTTTGGCCGGTC-TAGTGCTCGCCCGCCCGCCCG-CG--CGT
520 TCCACGGCTTGCGCATCCCGTCTCTCTGGCTGG-CGTAGTGCCCGCCCGCCCGCCCGCCGCTCGT
*
1517881 TTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGGACC-AGACTGAGGGT
584 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGGACCGA-ACTGAGGGT
* * * * * * * * * *
1517944 TACGATAGAAAGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCCGACTTACGTATCCCACA
648 TACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACC
* * * * *
1518009 CTTCTGGCCGGTTGAGCGCCCGTACGCTCATTCCGTGGGTTGAGTTGGGCATACGGAGTTCATTC
713 CCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
1518074 CCAGTCTAAGCATAC-GAAGTTCATTCCCTGTGTAAGATCGGACCAGACCGAGGGTTGCGGCAGA
778 CCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
* * * * *
1518138 ACATGCTGGGCTTGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATTGCCGGAG
842 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAG
** * *
1518201 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCAACGATCGGGGGGGCCGGGGGGGTGCGC
1 CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
** *
1518266 GCATGTGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
66 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
1518331 TCGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAA
131 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
*
1518396 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
196 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
1518461 TGAA-TGTTTTTGTGCATGCCAACAAAAATAGAAGGATCATGTCTACCAAGTTTGGGG-CAAAAC
261 TGAATTG-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * *
1518524 TCCTTCC-AAAAAATTTTAAAAAATCTCGAATCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAA
325 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * *
1518588 AACAAATCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGC
390 AACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
** * *
1518653 CATAAAAATGGCATTGGCACACAGTAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGA
455 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * *
1518718 TCCACGGCTTGCACATCCCGTCTCTCTGGCAGACGTAGTGCCCTCCCGTCCGCCCGCCCTCTCGT
520 TCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCG-CCGCTCGT
* * *
1518783 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTT
584 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGGACCGAACTGAGGGTT
* * * * * * * * * * *
1518847 ATGGCAGCAAGATTGGCAGCGCTCAGAAGGAGACCCGACCGATCGCCGACTTGCGCGT-CCACCC
649 ACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCC
* * * * * *
1518911 CTCTAGCCGGTTGAGCACCCGTACGCTCGTGTCGTGGGTTGAGTTAGGCATACGGAGTTCATTCC
714 CTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
1518976 CAGTCTAAGCATATGAAGTTCATTCCTAGTCTAACCATATGGAGTTCATTCCCAGTCTAAGATCG
779 CAG--T---C---T-AAG-------C-A---T-A-C--A--GAGTTCATTCCCAGTCTAAGATCG
* *
1519041 GACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTT
818 GACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * *
1519106 CGTCGGGGTACCATCACCGGAG
883 CGCCGGGGCACCATCGCCGGAG
* * *
1519128 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGGTGTG
1 CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTG
* * * *
1519193 TGCACATGATGTGTGATGGGTGCTGGT-CTTGGCCCTTATATTGGCCCCCTTTCCCTCATGAAAC
65 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
1519257 CTCGAGAACTCACACCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTA
130 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * *
1519322 AAGTGTCCGAAATGGGGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTTGAGGTTTTAG
195 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * * ** *
1519387 CCGAATTGTTTTTTGCATGCCAAAAAAAATACAAGGATCATGTCTACCTTGTTTGGGAG-AAAAA
260 CTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCCAAAA
* * * *
1519451 CTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCCAAAATCGTGAAAAATAAA
324 CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
** *
1519516 AAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAG
389 AAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
1519581 CCATAAAAGTGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
454 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *
1519646 ATCCACGGCTTGCGCATCCCGCCTCTCTGG-TCGGGGTAGTTCCCGCTCGGCCGCCCGCCCGCTC
519 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCCGCCCGCCCGCCCG-CCGCTC
* * * *
1519710 ATTTCGTCGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGAT-TGGACCGGACTGAGGG
582 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGGACCGAACTGAGGG
* * * * * * * *
1519774 TTGCGATAGTAGGATCGACAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCTCGC
647 TTACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCAC
* *
1519839 CCCTCTGGCCGGTTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGTGTTCATT
712 CCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * *
1519904 -CCAGTCTAAGCATAC-GAAGTTCATTCCCAGTCTATGATCGGATCGGACCGAGGGTTGCGGCAG
777 CCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG
* * *
1519967 CACATGCTGGGCAT-GGGCATGTGCTCGTGCCGTATTTTTCTTCACCGGGGCACCAT---C---G
841 CACATGCTGGGC-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAG
* * ** *
1520025 --T---CGGAGAACCTGACCTGCGGTATTGGGGTTCCGACGATC-CTGGGGCCGGGCGGGTGTGC
1 CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
*
1520084 GCACATGATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
66 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
1520149 TCGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCGGCCAGTAGCAATTAA
131 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
1520214 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
196 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * * * *
1520279 TGAATTTTTTTGTGCATGTCAACAAAAATACAAGGATTACATCCACCAAGTTTGGGACCAAAAAT
261 TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * * *
1520344 CGTTCTG-AAACATTTTTAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
326 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * * *
1520408 ACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAATTTACAAGCC
391 ACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
**
1520473 A-ACAAAATGGCATTTCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
456 ATA-AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
1520537 TCCACGGCTTGCGCATCTCGTCTCT-TGG-TCGGCATAGTGCCCGCCCGCCCGCCCGCCTGCTCG
520 TCCACGGCTTGCGCATCCCGTCTCTCTGGCT-GGCGTAGTGCCCGCCCGCCCGCCCGCC-GCTCG
* * **
1520600 TTTCTTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGAACCAAGGGT
583 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGGACCGAACTGAGGGT
* ** *** * * * *
1520664 TACGACAGCAGGATTGGCAGCACGTTGAGGGGGACCCGGTTGAACCCCAGCTTGTGCATCGCACC
648 TACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACC
* * * ** *
1520729 CCTCTGGCCGGTTGAGTGCCCACACGCTCGTTTTCGTGGGTTGACTTAGGCATAAAGAGTTTATT
713 CCTCTGGCCGGTTGAGCGCCCGCACGCTC-ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * *
1520794 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCGTACCAGACCGAGGGTTACGGTAGC
777 CCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGC
* * * * *
1520859 ACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCACCGAGGCACCATCGTCGGAG
842 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAG
** * * * * * *
1520922 CATCGTCGGAGAAACTGACCGACGGAATTGGGGTTCTGGCGATCGGGGGGGTC--GGGGG-GTGC
1 CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
1520984 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
66 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
1521049 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAA
131 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
1521114 AGTATTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGT
196 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
1521179 TGAATTGTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACC
261 TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * *
1521244 CCTTCTGAAAAAATTTTCAAAAATCTCGAATCGCAAAAAGTTTCTAAAATCGTGAAAAATAG--A
326 CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
** *
1521307 A-AA-T-GAATTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCC
391 ACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
1521369 ATTAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCAAT
456 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
** ** * * * *
1521433 CCACGGCTTGCGCATCCCGTCTCTCTGTTTGGCGTAGTGCCCGCCCGCCCGTTCACCCCTTTGGT
521 CCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCCGC-TCGTT
* **
1521498 TCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCT-GACCCG-ACTGAGCATT
585 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGGA-CCGAACTGAGGGTT
* * ** * * * * * *
1521561 GCAACAGCAGGATCGGTGGCACGTAAAGGGGGACCCGACCGATCCCTGGCTTGTGCATCTCACTC
649 ACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCC
* ** * *
1521626 CTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATTCGGAGTTCATTCT
714 CTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
1521691 CAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACTAGACCGAAGGTTGCGGCAGCAC
779 CAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAC
* * * *
1521756 ATGGTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGCCAGGGCACCATTGCCGGAG
844 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAG
* *
1521817 CATCACCGGAGAACCTGACCGACGGCATTGGAGTTCCGACGATCGGGGGGGCCGGCGGGGGGTTG
1 CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-G-GGGGGG-TG
* * * *
1521882 TGCGCAACATGATGTGCGATGGGTGCTGGTACTTGGCACTTAAATTGGCCCCTTATCCCTTATCA
63 TGCGC-ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* **
1521947 AACCTCGAGAACTCATACCCCCTTAAAGAGTTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
127 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
1522012 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
192 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTT
* * *
1522077 TTAGCTAAATTGTTTTGTGCATGCCAACAGAAATACAAGGACCACGTCTACCAAGTTTGGGGCCA
256 TTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* **
1522142 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCACGAAAAAT
321 AAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
*
1522207 AGAAAACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
386 AGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
1522272 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTA
451 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
1522337 TCGATCCACGGCCTGCGCATCCCGTTTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCACGTACGC
516 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCG-CCGC
* * * * * * *
1522402 TCGCTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTTTAAGCTCAGG-CC-AA-TCGA
580 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGGACCGAACT-GA
* * * * * * *
1522464 -GGTTGCGGCAGTAGGATCGGCAGCACGCAGAGAGGGACTCGGCCGATCCCCGGCTTGCGTATCC
644 GGGTTACGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * * * *
1522528 CACCCCTTTGGCCGGTTGAGCGCCTGCACGTTCATTTCATGGGTTGACTTAGGCATACAGAGTTC
709 CACCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * * * *
1522593 ATTCCCAGTCTAAGCAAACAGAGTTTATTCCCAGTCTAAGATCAGATCAAACCGAGGGTTACGGT
774 ATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGC
* ** ** *
1522658 AGCACATGCTGGGCTCGGGTATGTGCTATTGCCATATTTTTCTTCGTCGGGGCACCATCGCCGGA
839 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGA
1522723 G
904 G
* * * * * * * * *
1522724 AATCATCGGAGAACCTGACCGGTGGCATTAGGGTTCTGACAATCGGAGGGGTCGGGAGGGTGTGC
1 CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
* * * *
1522789 GCACATGATGTGCGATGGTTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCGTGAAACC
66 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
1522854 TCGTGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAA
131 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* *
1522919 AGTGTCTAAAATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
196 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * *
1522984 TGAATTTTTTTATGCAAGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAAAT
261 TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
1523049 CCTTCCAAAAAAATTTTAAAAAATCCTGAACC
326 CCTTCCGAAAAAATTTTAAAAAATCCCGAACC
1523081 CCCGTTCATT
Statistics
Matches: 4267, Mismatches: 520, Indels: 181
0.86 0.10 0.04
Matches are distributed among these distances:
888 2 0.00
889 164 0.04
890 258 0.06
891 322 0.08
892 35 0.01
894 1 0.00
895 229 0.05
896 245 0.06
897 496 0.12
898 35 0.01
899 8 0.00
900 254 0.06
901 123 0.03
902 406 0.10
903 388 0.09
904 8 0.00
905 7 0.00
906 3 0.00
907 260 0.06
908 102 0.02
909 113 0.03
910 6 0.00
912 1 0.00
913 1 0.00
917 1 0.00
918 1 0.00
920 3 0.00
921 2 0.00
922 1 0.00
923 1 0.00
924 1 0.00
927 355 0.08
928 48 0.01
929 328 0.08
930 59 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (904 bp):
CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
ACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTT
CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGGACCGAACTGAGGGTTAC
GACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCT
CTGGCCGGTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACAT
GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCCGGAG
Found at i:1525020 original size:289 final size:289
Alignment explanation
Indices: 1524501--1525075 Score: 925
Period size: 289 Copynumber: 2.0 Consensus size: 289
1524491 ATGCCAATAT
*
1524501 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATC
1 AAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATC
* *
1524566 CCGAACTGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
66 CCGAACCGCAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
* * *
1524631 ACGTGAAGGCTTACGGGACCATTGTTTGAATTTACAAGCCATAAAAATACCATTGGCATGCAGAA
131 ACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATACCATTGGCATGCAGAA
* * * **
1524696 ACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTATGGCTTGCGCATTCTGTCTCTC
196 ACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCATCTCTC
*
1524761 TGCCCGGCGTAGTGCCCGCCCGCCCGTAA
261 TGCCCGGCATAGTGCCCGCCCGCCCGTAA
* * *
1524790 AAATACAAGGATCACGTCTACCAAGTTTGGCGTCAAAACTCCTTCCAAAAAAATTTTCAAAAATC
1 AAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATC
* * * *
1524855 TCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTC
66 CCGAACCGCAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
* **
1524920 ACGTGAAGGCTTAAGGGACCGTTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA
131 ACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATACCATTGGCATGCAGAA
* *
1524985 ATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCATCTCTC
196 ACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCATCTCTC
*
1525050 TGGCCGGCATAGTGCCCGCCCGCCCG
261 TGCCCGGCATAGTGCCCGCCCGCCCG
1525076 CCCGCTCGCA
Statistics
Matches: 261, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
289 261 1.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (289 bp):
AAATACAAGGATCACGTCTACCAAGTTTGGCGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATC
CCGAACCGCAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATACCATTGGCATGCAGAA
ACATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCATCTCTC
TGCCCGGCATAGTGCCCGCCCGCCCGTAA
Found at i:1525305 original size:26 final size:26
Alignment explanation
Indices: 1525269--1525321 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1525259 GTTAACTTAG
1525269 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1525295 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1525321 G
1 G
1525322 ATCGTATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1525783 original size:25 final size:26
Alignment explanation
Indices: 1525751--1525814 Score: 128
Period size: 26 Copynumber: 2.5 Consensus size: 26
1525741 CCGAAAAAAT
1525751 TTTAAAAAATCTCCAACCGCACAAAG
1 TTTAAAAAATCTCCAACCGCACAAAG
1525777 TTTAAAAAATCTCCAACCGCACAAAG
1 TTTAAAAAATCTCCAACCGCACAAAG
1525803 TTTAAAAAATCT
1 TTTAAAAAATCT
1525815 TGAAAAATAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.47, C:0.23, G:0.06, T:0.23
Consensus pattern (26 bp):
TTTAAAAAATCTCCAACCGCACAAAG
Found at i:1526242 original size:26 final size:26
Alignment explanation
Indices: 1526206--1526258 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1526196 TTTGACTTAG
1526206 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1526232 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1526258 G
1 G
1526259 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1527148 original size:26 final size:26
Alignment explanation
Indices: 1527108--1527160 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1527098 GATGACTTAG
*
1527108 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
1527134 GCATACGGAGGTCATTCCCAGTCTAA
1 GCATACGGAGGTCATTCCCAGTCTAA
1527160 G
1 G
1527161 ATCAAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGGTCATTCCCAGTCTAA
Found at i:1528035 original size:26 final size:26
Alignment explanation
Indices: 1528006--1528056 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
1527996 TTCACTTAGG
1528006 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAGTCTAAA
1528032 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
1528057 GATCGGACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAA
Found at i:1528208 original size:899 final size:901
Alignment explanation
Indices: 1524788--1538951 Score: 8128
Period size: 898 Copynumber: 15.4 Consensus size: 901
1524778 GCCCGCCCGT
* * * *
1524788 AAAAATACAAGGATCACGTCTACCAAGTTTGGCGTCAAAACTCCTTCCAAAAAAATTTTCAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
1524853 TCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
66 TCTCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
1524918 TCACGTGAAGGCTTAAGGGACCGTTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * * *
1524983 AAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCATCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTC
* *
1525048 TCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCTCGCATGCTCGTTTCGTCGGTTGGCTTAGGCA
261 TCTGGCC-GCATAGTGCCCGACCGCCCGTCCGC-C-C--GCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
1525113 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAGTAGCAAGATCGGCAGCA
321 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGAGTTGCAGCAGCAAGATCGGCAGCA
* * *
1525178 CGCAGAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCTGCCCTTCTGGCCGGCTGAGCGCCCG
386 CGCAAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
* *
1525243 CACGCTCGTTTTGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
451 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * *
1525308 ATTCCCAGTCTAAGATC-GTATCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGACATGTG
516 ATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGACATGTG
* *
1525372 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCGCCGGAGAACCTGACCGGTG
580 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCACCGGAGAACCTGACCGGCG
* * * * *
1525437 ACATTGGGGTTCCGATGATCGGGTGGGCCGGGGGGTGTGTGCACATGATGTGTGATGGGTGCTGG
645 GCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
1525502 TACTTGACCCTTATATTGTCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
710 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
1525567 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
775 GCATTTGAGATTTTACAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
1525632 TCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTCCATGCCAAC
839 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
*
1525695 AAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
1525760 TCTCCAACCGCACAAAGTTTAAAAAATCTCCAACCGCACAAAGTTTAAAAAATCTTGAAAAATAG
66 TCT---------C----------AAA---CC-A---CAAAAAGTTTCAAAAATCGTGAAAAATAG
1525825 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
105 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
1525890 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATC
170 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * *
1525955 GATCCATGGCTTACGCATCCCATCT-TCTGGCCGACATAGTGCCCGCCCGCTCGTCCGCCCGTTC
235 AATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CATAGT----G--C-C-CGACCGCCCGTCC
* **
1526019 GTCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAA
291 G-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAA
* * ** * * *
1526084 ACCGAGAGTTAC-GACAGCAAGATCAGCAGCACATAGAGGGGGACCTGGCCGACCCCCGAG-TTG
355 ACCGAGAGTTGCAG-CAGCAAGATCGGCAGCACGCAAAGGGGGACCCGGCCGATCCCCG-GCTTG
** ** * *
1526147 CGCATCCTGCCTTTCTGGCCAACTGAGCACCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATAC
418 CGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
1526212 GGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACTGAGG
483 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGG
* * * * *
1526276 GTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCATATTTTTCTTCGTCGAGGCACCG
547 GTTGCGACAGCACATGCTGGGCTCGGACATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCA
* * *
1526341 TCACCGAAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGCCCGGG
612 TCACCGAAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GG
*
1526406 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCT
676 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* * * * *
1526471 GATCAAAGCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGCTTTGCTACCATA
741 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATA
1526536 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
806 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
1526601 TTTTTAGCTGAATTTTTTTGTGCATGCCAAC
871 TTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
1526632 AAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * ** *
1526697 TCCCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
66 TCTCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
1526762 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAATTGGCATTGGCACGCAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * **
1526827 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTCAATCTACGGCTTGCACATCTTGTCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTC
* * * * * * *
1526892 TCTGACTGGCGTAGTGCCCGCCCACCTG-CCTG-CCGCTCGTTTCATCGGTTGGCTTAGGCATAC
261 TCTGGC-CGCATAGTGCCCGACCGCCCGTCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** * * * * * *
1526955 GGAGTTCATTCCCAATCTAAGATTGGACCAAACCAAGGGTTGCGGCAGCAGGATCGACAGCACGT
324 GGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGAGTTGCAGCAGCAAGATCGGCAGCACGC
* * * * * *
1527020 AGAGGGGGACCCGGCCGATCCCCGGCCTACGCATCTTACCCCTCTGGTCGGCTGAGCGCCCGCAC
389 AAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
1527085 GCTCGTTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGGTCATT
454 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * **
1527150 CCCAGTCTAAGATCAAACCGGACTGATGGTTGCGGTAGCACAT-CTTGGGCTCAGG-CATGTGCT
519 CCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCACATGC-TGGGCTC-GGACATGTGCT
* ** * * *
1527213 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGGTGGC
582 GGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCACCGGAGAACCTGACCGGCGGC
* * * * *
1527278 ATTAGGGTTCCGACAATC--GGGGGCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTAGTA
647 ATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
1527341 CTTGGCCCTTATACTGGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
712 CTTGGCCCTTATA-TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
1527406 CATTTGAGATTTTATAGGTTTGCTGCCATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
776 CATTTGAGATTTTACAGGTTTGCTGCCATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * * *
1527471 AAATGGTCAC-AAATCTTGTAAACTTTGAGCTTTTACCTGAATTTTTTTATGCATGCCAAC
841 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
1527531 AAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTGCTTCCGAAAAAATTTCAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * *
1527596 TCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCGTCTTTCCATGAAAC-
66 TCTCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
1527660 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * *
1527725 AAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCAATCCACGTCTTGTGCATCCCGTATC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTC
*
1527790 TCTGGCCGCATAGTGCCCGACCGCCCGTCCGCCCGCTCGTTTGGTCGGTTGGCTTAGGCATACGG
261 TCTGGCCGCATAGTGCCCGACCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
*** * * * *
1527855 AGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGAGTTGTAGCAGCAAGATCGGTAGCATGCAA
326 AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGAGTTGCAGCAGCAAGATCGGCAGCACGCAA
* * * * *
1527920 ATGGGGACCC-GACTATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGC
391 AGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
1527984 TTGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATACGGAGTTCATTCC
456 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * *
1528049 CAGTCTAAGATCGGACCAGACTGAGGGTTGCAATAGCACCTGCTGGGCTCGGACATGTGCTGGTG
521 CAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGACATGTGCTGGTG
** ** *
1528114 CCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTG
586 CCACATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCACCGGAGAACCTGACCGGCGGCATTG
**
1528179 GGGTTCTAACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
651 GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
** *
1528244 GCCCTTATATTGGCCCATTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTT
716 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
1528309 GAGATTTTATAGGTTTGCTGCCATAGCGATTAGAGTGTCTGAAATGGGGACACTTTTTTCAAATG
781 GAGATTTTACAGGTTTGCTGCCATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
1528374 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
846 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
1528430 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * **
1528495 TCTCAAACCCCAGAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
66 TCTCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
1528560 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* ** * *
1528625 AAATATGATGATGTGCCTAAACCCACCTACTGCCCTATCAATCCACGTCTTGTGCATCCCGTCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTC
** * * * *
1528690 TCTGGTAGGCGTAGTGCCCGATCG-CC-T--GCCCGCTCATTTTGTCGGTTGGCTTAGGCATACG
261 TCTGG-CCGCATAGTGCCCGACCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * **
1528751 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA-AGGTT-CCGATAGCAAGATCGGTAGCATA
325 GAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGA-GTTGCAG-CAGCAAGATCGGCAGCACG
* * * * ** ***
1528814 CAGAGGGGGACCCGACCGATCCCCAGCTTACATATCCTGTATCTCTGGCCGACGTAGTGCTCGAC
388 CAAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG-C--C---G-GCT-GA-
* * * * * *
1528879 CGCCCGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
444 -G--CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG--
* ** * * * * *** *
1528944 CAGACTGGA--TCGAGGGTTGTGGCAG-C-AGGATCGGCAGCATGCAAATG-GGGACCCGACTAT
504 CATAC-GGAGTTC-A----T-TCCCAGTCTAAGATCAG-ACCA-G--ACTGAGGGTTGCGAC-AG
* ** * ** * * * ** * *
1529004 CCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTTGT-TTCGT-GGGTTC
557 CACATGC-TGGGC-T--CG-GAC-AT-G--TGCTG-GTG-CC--ACATTTTTCTTCGTCGGG-GC
* ** * ** * * **
1529067 A-C-TTA--G--GCAT-A-CGGAGTTCATTCCCAGTCAAAGCATATGGAATTCATTCCCAGTCTA
608 ACCATCACCGAAGCATCACCGGAGAACCTGACC-GGC--GGCAT-TGG----GGTT-CC-G---A
* * ** * * ** * * * * *
1529124 AGATTGGACCGGACCGAGGTTTACG-GCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGC--CG
660 CGATCGG-GGGGGCCGGGGGGT--GTGC-GCACATGATGTG--CGATG--GGTGCTGGTACTTGG
*** * * * * * * * * **** *
1529185 TATTTTTCTTCGCCAGGGCACC-AT-CGTCGGAGC-ATCATCGGAGAACCTGATCGGTGCATT--
717 CCCTTATATTGGCC----C-CCTATCCCTC--ATCAAACCTC-GAGAA-CTCA-CACCCCCTTAA
** ** * * * * * * * *
1529245 -G-GGGTTTCGACGATGGGGGGT-CGGGGGTGTGCGTACAAGATGGGCGA-TAGA-TG-CTGGTA
772 AGAGCATTT-GA-GAT----TTTAC--AGGTTTGC-TGC--CAT-AGCCATTAAAGTGTCT-GAA
* * * * ** ** * ** * ** *** ***
1529304 CT-TGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
824 ATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTGTA--CACTTCGAGTT-TTTA
*
1529367 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-AT
877 GC---TGA-ATTTT-----TTTG-TG-CA-T-GCCAAC
* * * ** * * ** * * * * * **** **
1529404 TAAAGTGTCTGGAATGGGGGCACTTTTTTCAA--AT-GGTCAAAAAATCTTGTACACTTTGAGGT
1 AAAAAT-AC---AA--GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-T-C-CGAAAAAAT
*** * * ** * ** * ** * ***
1529466 TTTAGCTGAATTTTTTTGTGTATGCCAACAAAAA--TACAAGGATCACGTCTACCAACCTTGGGG
57 TTTA----AA---AAATCT-CAAACC-ACAAAAAGTTTCAAAAAT--CGT-GA--AAAATAGAAA
* * ** * * ** * * * * * ** *
1529529 CCAAAAC-TCCTTTCGAAAAAATTTTA---AAAGATCTT---GAACC---GTAAAAAGTTTCAAA
108 ACGAGTCGT-CTTGCCATGAAACTTCACGTGAAG-GCTTAAGGGACCATTGTATGAA-TTT-ACA
** * * * ** * *
1529584 AATCGTGAAAAATAGAAAACAAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCAT
169 AGCCAT-AAAAAT-G---GC-A-TTGGCACG-CA-GAAA--T-A--TGAA-G---ATGTG-CC--
** *** ** * * * *** * **
1529649 TGTCAGAAATTTACAAGCC-ATCAA--AACGGCATTG-GCA---CGTAGAAATAT-GAAG-AT-G
213 T-AAACCCACCTACCACCCTATCAATCCACGGC-TTGCGCATCCCGT--CTCTCTGGCCGCATAG
* * ** * ** * ** * *
1529704 TG-CTGAAACC-CACC-TACCACCCTATCG-ATCCACGGCTTGCACATCCTACCTCTCTGGCCGG
274 TGCCCG--ACCGC-CCGT-CCGCCCGCTCGTTTCGTCGG-TTG-GC-T--TA-GGC-AT--ACGG
* * * * * *** *** * ** *
1529765 CG-T-AGTGCCC-GCCT--G-CCCG-CCCGCCCGCTTGTTTGGTCGGTTGGCTTAGGCATACGG-
326 AGTTCA-TTCCCAGTCTAAGATCAGACCAAACCGAGAG-TT-G-CAG-CAGC--AAG-AT-CGGC
* ****** * *** * ** * * * ** ** ** *
1529822 AGTTCATTCCCAGTCTAAGATCAAACCGAACCGAGGGTTGTGGCAGCAAG-ATCGGTAGCAC-GC
382 AG--CA--CGCAAAGGGGGACCCGGCCGATCCCCGGCTTG-CGCATCCTGCCCCTCTGGC-CGGC
* * * * ** ** *** * **
1529885 ATAGGGGGACCCG-ATCGATCCCCGGCTT-GTGCATCCCACCCCTCTA-GCCGGCTGAG--C-GC
441 -T-GAGCG-CCCGCA-CG---CTC-GTTTCGTGGGT-TGA---CT-TAGGCATACGGAGTTCATT
* * * * ** * * * ** * * * *
1529944 CCGCACG-CT-CGC-TTCGTGGGTTGACTTAGGCA-TATGGAGTTCATTCCCAGTCT-AAGATCG
493 CC-CA-GTCTAAGCATACG-GAGTTCA-TT-CCCAGTCT-AAGATCA-GACCAGACTGAGGGTTG
* * * **
1530004 -GACCAG-ACTGAGGGTTGGGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTC
551 CGA-CAGCAC--A-TGCT--GG--G--C-T-C-------GGACATGTGCTGGTGCCACATTTTTC
** ** * ** ** * * *
1530067 TTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGATGGCATTGGGGTTTCGGCA
597 TTCGTCGGGGCACCATCACCGAAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * *
1530132 ATCGGGGGGGCCGGAGGGTGTGCGCACAAGATGTACGATGGGTGCTGGTACTTGGCCCTTATATT
662 ATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
1530197 GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
727 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
1530262 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAAT
792 GGTTTGCTGCCA-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* *
1530327 CTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
856 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * * * *
1530373 AAAAATGCAAGGATGATGTCTACCAAGTTTTGGGCCAAAACTGCTTCCAAAAAAATATTTAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT-TTTAAAAA
* * *
1530438 ATCCCGAACCACAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
65 ATCTCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
1530503 TTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
130 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
1530568 GAAATATGAAGATGTGCCTAAACCCACCTAGCACCCAATCGATCCACGGCTTGCGCATCCCGTCT
195 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCT
* * *
1530633 CTCTGGTCGACATAGTG--C--CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATTC
260 CTCTGGCCG-CATAGTGCCCGACCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
1530694 GGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGATG-GTTGCAGCAGCAGGATCGCCAACACG
324 GGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGA-GAGTTGCAGCAGCAAGATCGGCAGCACG
*** * * * * * * * *
1530758 TGGAGGGGGACTCGGCTGATCCCCAGCTTGTGCATCCTGCTCCTCTAGCCGGTTGAGCGCCCACA
388 CAAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
1530823 CGTTCGTTTCGTGCGTTGACTTAGGCCTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
453 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * * * *
1530888 TCCTAGTCTAAGATCAGACCAAACCGAGGGCTGCG-GAGCACATGCTGGGCTCGGGCATGTACTA
518 TCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGACATGTGCTG
* * * *
1530952 GTGCCACATTTTTCTTCGTTGGGGCACCATCATCGAAGCATCACCGAAGAACCTGACCGACGGCA
583 GTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCACCGGAGAACCTGACCGGCGGCA
** * * *
1531017 TT-GGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGTTGTGCAATGGCTGCTGGTAC
648 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
1531081 TTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCA
713 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* * *
1531146 TTTGAGATTTTAAAGGTTTGCTACCAGCAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
778 TTTGAGATTTTACAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * * * *
1531211 AATGGTCACAAAGTTTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGTGCTTGCAAAAA
842 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC-CAAC
* *
1531272 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCTAAAAAATTTTAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* ** ** * * *
1531337 TCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTTGTCTTGCCATGAAACT
66 TCTCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
1531402 TCACGTTAAGGCTTAAGGGACCATTGTATGAATTTCCAAGCCATAAAAATGGCATTGGGATGCAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * * * *
1531467 AAATATGAAGATGTGCCTAAACCAACCTACCACCTTATCGATCCACGACTTACGCATCTCGTCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTC
* * * * *
1531532 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCGTCAGTTGGCTTAGGCATACG
261 TCTGGCC-GCATAGTGCCCGACCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* ** * * * * * * *
1531597 GAGTTCATTCCCAGTCTAAGATCGGACCGGATCAAGGGTTGCGGCAGTAGGATCGGCAGCATGCA
325 GAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGAGTTGCAGCAGCAAGATCGGCAGCACGCA
* * * * * * * * *
1531662 GAGGGAGACCCGGTCGATCCCCAGCTTACACAT-CTCACCCCTCTGGCCGGCTAAGCGCCTGCAC
390 AAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * ** *
1531726 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCCTAGTCAAAGCATACAAAGATCATT
454 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * *
1531791 CCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
519 CCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGACATGTGCTGG
** * * * * * * *
1531856 TGCTGCATTTTTCTTCGCCGGCGAACCATCGCC-AGAGCATCGCCAGAGAACCTGACCGACGGCA
584 TGCCACATTTTTCTTCGTCGGGGCACCATCACCGA-AGCATCACCGGAGAACCTGACCGGCGGCA
1531920 -------T-------T----------GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGG-A
648 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GGTA
* * *
1531960 CTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTGGTGAACTCACA-CCCCTTAAAGAGC
712 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * * * *
1532024 ATTTAAGATTTTACAGTTTTGCTGCCAGTAGCCACTAAAGTCTCTGAAATAGGGACACTTTTTTC
777 ATTTGAGATTTTACAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* ** * * * * *** * * *
1532089 AAATGGTCACAAAATCTTGTAGTGCCCGCCCG-CTCGTTTCG-TCG-GTTGGCCTAG-GCATACG
841 AAATGGTCACAAAATCTTGTA---CAC-TTCGAGT-TTTTAGCT-GAATT-TTTTTGTGCATGCC
1532150 AAGTTC
899 AA---C
**** * * * * * ** * * ** * *
1532156 ATTCCTAGTCTAA-GATCA-GACCGGACTGAGGGTTGCGGTAG-CAGGATTGGCAGCACG-CAGA
1 AAAAATA--C-AAGGATCACG-TC-TAC-CAAGTTTG-GG--GCCAAAACT-CCTTC-CGAAAAA
**** **** * * ** * * ** * **** * ** * **
1532217 AGGGGATCTGA--TCGATCC-C--TGACTTGC--GCATCCT-ACCCCTCTG--GCCG-GTTG-AG
55 ATTTTAAAAAATCTCAAACCACAAAAAGTTTCAAAAATCGTGAAAAAT-AGAAAACGAGTCGTCT
* * * * * * ** *
1532270 TGCC-T-ACACGCTCATTTCGTG-GGTTGACTT-AGGCA-TACTG-AGTTCATTCCCAATCTAAG
119 TGCCATGAAAC-TTCA---CGTGAAG--G-CTTAAGGGACCATTGTA-TGAATT---TA-C-AAG
* * ** ** * * * **
1532329 -CATACGAAAT-TCATTCCCA-GTCTAAGATCATGTATACCAAGTTTGGGGCCAAAACTCCTTCT
171 CCATA-AAAATGGCATTGGCACG-C--AGA--A---ATATGAAG-AT-GTGCCTAAAC-CCACCT
** *** ** * * * *** **** ******
1532391 GAAAAAATTTTAAAAAATCC-CGAAC-CG-GGA-AAAGT-T-T-TGAAAATCATTAAAAATTGAA
224 ---ACCACCCT-ATCAATCCACG-GCTTGCGCATCCCGTCTCTCTG-GCCGCA-TAGTGCCCG--
* ** * * ** * ** * * **
1532449 AACGAGTCGTCTTGCCATGAAAC--TTC-ACGTGAAGGCTTAAGGGACCAT-TGTA-TGAATT--
280 ACCG-CCCGTC-CGCC-CG-CTCGTTTCGTCG-GTTGGCTT-A-GG--CATACGGAGTTCATTCC
* * * ** ** * ** * * *
1532507 TA--C-AAG-CCATA--AAAATG-GCA-TTGGC-GCAAAAAAATATGAAG-ATTTGCCTAAACCC
336 CAGTCTAAGATCAGACCAAACCGAG-AGTT-GCAGCAGCAAGATCGGCAGCA--CG-C-AAA--G
**** *** * * * *
1532562 ACCTACCACTATATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGAGCCTGCCCA
393 GGGGACC-C--GGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC-T-GAG-C-G--C-
* * * * * * *
1532627 CCTGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGTGTTAATACCCAGTCTAAGATCAGACT
448 CC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG--CATAC-
** * * * ** *
1532692 GGA--TCGAGGGTTACGGGAG-C-AAGATCGGTAGCATG-CAGAGGG--G-GACCAAGCTGATCC
509 GGAGTTC-A---TT-C-CCAGTCTAAGATCAG-ACCA-GACTGAGGGTTGCGA-C-AGCACATGC
** * * * * ***
1532749 CCGGCTTGTACATCTCGCCCCTTTGGCCAGTTGAGCGCCCATACGCTCGTTTCGT-GGGTAGACT
564 TGGGCTCGGACATGT-G---C--T-G---G-T--GC-CACAT-TTTTC--TTCGTCGGG--G-C-
* * *** * * * **** * *
1532813 TAGGCAT-A-CGGAGTTCATTC-CCAGTCTAAGCAT-A-CGGAGTTCACTCCCAG-T-CTAAGAT
608 -A-CCATCACCGAAG--CA-TCACC-GGAGAA-CCTGACCGGCG-GCA-TTGGGGTTCCGACGAT
** * * * * * * * * * *
1532871 CGGACTCGGACCGAGGGTTGCAGTAGCACAT--TCTAG-GCTCGG-GCAT-GTGCTGGTGCCGAA
664 CGG--GGGGGCCGGGGGGTG-TG-CGCACATGATGT-GCGATGGGTGC-TGGTACTTG-GCC---
* * * *** * * ** ** ** **
1532931 TTTTTCTCCGTCGGGGAACCTGA-CCGGACT-ATC--GCC-GGAGAAC-CTGA-CCGGTGGCATT
719 CTTATAT---T--GGCCCCCT-ATCC---CTCATCAAACCTCGAGAACTCACACCCCCT-TAAAG
** * ****** * * ****
1532989 AGGGTTCCGACGATCGGGGGGGTGTGC-GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
774 AGCATT-TGA-GATTTTACAGGTTTGCTGC-CAT-A---GCCATTAAAG-T-GT-C-T-G-----
* * ** * ** ** * ** * ** **
1533053 ATATTGGCCCCCTATCCCTCATCAAA-CCTCA-AGAA-CTCATACCCCCTTAAAGATCATT---T
822 AAATGGGGACACT-T---TTTTCAAATGGTCACAAAATCTTGTA--CACTTCGAG-TTTTTAGCT
* *
1533112 GAGATTTTACAGGTTTCCTGCTAGTAGCC-AT
880 GA-ATTTT-----TTT-GTGC-A-T-GCCAAC
* * * * * ** * **
1533143 TAAAGTGTCTGAAATGGGGA-CACTTTTTTCAA--ATGGTCCCAAAATCTTGTACACTT-CGAGT
1 AAAAAT-AC---AA---GGATCACGTCTACCAAGTTTGGGGCCAAAA-C---T-C-CTTCCGA--
* ** * **
1533204 TTTTAGCTGAATTATTTTGTGCTTGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC
51 ----A----AA--A--AT-T--TT---AAAAAATCT-CAA--ACCA---C-AAAAAGTTT-----
* * * * * **
1533269 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAATGTTTTGAAAATTGTGAAAA
86 CAAAAAT-CGT--G-AAAAA---TAGAAAA---CG-A--GT----CG---T-----CT-TG--CC
1533334 ATAGAAAATGAGTAGTCTTCTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
123 AT-G---A--A--A--C-T-TC----------ACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* ** * * *
1533399 ACAAGCCAAAAAAATGGCATTGGCACATAGAAATATGAAGGTGTGGCTAAACCCACCTACCAACC
166 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * *
1533464 TATCGATCCACGGCTTGTGCATCTTC-TCTCTCTGGCCAGCGTAGTGCCCG-CCTGCCCGCCTGC
231 TATCAATCCACGGCTTGCGCATC-CCGTCTCTCTGGCC-GCATAGTGCCCGACC-GCCCG--T--
* * **
1533527 CCGCCCGCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGA
289 CCG--C-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
*** ** * * * * * * * *
1533592 CCGGGCCGAGCA-TTGTGGCAACATGATCGACAGCATGCAGAGGGGGACCCGACTGATCCACGGC
351 CCAAACCGAG-AGTTGCAGCAGCAAGATCGGCAGCACGCAAAGGGGGACCCGGCCGATCCCCGGC
* * * * * * * * * *
1533656 TTCCACATCCCGCCACTCTGGCTGACTGAGCACCCGCACGCTCGTTTTGTGAGATGACTTAGGCA
415 TTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* ** ** * *
1533721 TACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCGTAGTCTAAGATTGGACCATACCGA
480 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA
* * ** *
1533786 GGGTTGCGACAGCACATGCTTGGCTCAGG-CATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCA
545 GGGTTGCGACAGCACATGCTGGGCTC-GGACATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCA
* * * *** * * * ** * *
1533850 CCATTACAGGAGCATTGTCAGAGAACCTGACCGGTGGCATTGGTGTTTTGGCGGTC-GGGGGGCC
609 CCATCACCGAAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC
* * *
1533914 GGAGGGTGTGCGCACATGATGTTCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCC
674 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
1533979 CTCATCAAACCTCAAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCA
739 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
1534044 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTC
804 -TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* ** *
1534109 GAGTTTTTAGCTGAATTTTTTTATGCATAACAAA
868 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
1534143 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * ** *
1534208 TCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
66 TCTCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* **
1534273 TCCCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAAGCCATAAAAATGGCATTGGCATACA
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATTGGCACGCA
* * * * *
1534338 GAAATATGAAGATGTACCTAAACCCACCTACCACGCTATCGATCCATGGCTTGTGCATCCCGTCT
195 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCT
** * *
1534403 CTCTGGCCAGTGTAGTGCCCACCCGCCCGCCCGTCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
260 CTCTGGCC-GCATAGTG----CCCGACCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *** * * * * * *
1534468 ATACGGAATTCATTTCCAGTCTAAGAT-TGAACTGGACCAAGGGTTGTACCAGCAGGATTGGCAG
320 ATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAAACCGAGAGTTGCAGCAGCAAGATCGGCAG
* * ** ** ** *
1534532 CATGCAGAGGGGGACCCGATCGATCCTTGGCTTGCGCATCCAACCCCTCTGGCCGGCTGAGCGCG
384 CACGCAAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* * ** *
1534597 CACATGCTTTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGT
449 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * * * * * *
1534662 TCATTCCCAGTCAAAGATCGGACCGGACCGAGGGTTGCGGCAGCATATGCTGGGCTCGGGCATGT
514 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGACATGT
* *
1534727 GCTGGTG-CAGCATTTTTCTTCG-CCGGGCACCAT---C---GC-T----GCAGAACCTGACCGG
579 GCTGGTGCCA-CATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCACCGGAGAACCTGACCGG
* * * *
1534779 CGGCATTGGGGTTCCGACGATC-GGGGGGTCGGGGGGTGTGTGCAAATGATGTGCGATGAGTGCT
643 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
1534843 GGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
708 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
1534908 GAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTC-CAAATTGAGGACACTT
773 GAGCATTTGAGATTTTACAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTGAAA-TGGGGACACTT
* *
1534972 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCAAA
836 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC-CA
*
1535037 AA
900 AC
* * * **
1535039 AAAAATACAAGGATCATGTCTACTAGGTTTGGGGCCAAAACTGTTTCCGAAAAAATTTTAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * * * * * *
1535104 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAACCA
66 TCTCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
1535169 TCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCATGCAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * *
1535234 AGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAGCCCGTCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTC
* * *
1535299 TCTTGCCGACATAGTGCCCGTCCG--C--CCGCCCGCTAGTTTCGTCGGTTGGCTTAGGCATACG
261 TCTGGCCG-CATAGTGCCCGACCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * *** * * * * * *
1535360 GAGTTCTTTCACAGTCTAAGAAT-GGACTGGACCGAGGGTTGCTGCAGCAGGATCGACAGTACGT
325 GAGTTCATTCCCAGTCTAAG-ATCAGACCAAACCGAGAGTTGCAGCAGCAAGATCGGCAGCACGC
* ** * * * *
1535424 AGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCTTGCCCCTCTGGCCGGTTGAGCTCCCGCAA
389 AAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
1535489 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAG-AT-C-G-G---A--
454 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
1535545 --C---C---G----GA-C--A--GAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
519 CCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGACATGTGCTGG
** * *** * * *
1535593 TGCCGTATTTTTCTTCGTCGGGGCACCATCGCC-AGAGCATTGTCGGAGAATCAGATCGGCGGCA
584 TGCCACATTTTTCTTCGTCGGGGCACCATCACCGA-AGCATCACCGGAGAACCTGACCGGCGGCA
* * * * *
1535657 TTGAGGTTCCGATGATCGGGGGGGCCGGGAGGTGTGTGCACATGATGTGCGATGGATGCTGGTAC
648 TTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
1535722 TTGGCCCTCATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAAAAGCA
713 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
1535787 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCCA
778 TTTGAGATTTTACAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* *
1535852 AATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAC
842 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
1535912 AAAAATAAAAGGATCACGTCTACTAAGTTTGGAGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
** * *
1535977 TCAT-AAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
66 TC-TCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * **
1536041 TTCCCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATATAAATGGCATTGGCA-TTA
130 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
1536105 AAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT
195 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCT
* * * * *
1536170 CTCTGGCCGACGTAGTGCCCG-TCG---G-CCAGCTCGCTCATTTCGTCGATTGGCTTAGGCATA
260 CTCTGGCCG-CATAGTGCCCGACCGCCCGTCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * ** * * * *
1536230 CGGAGTTCATTCCAAGTCTAGGAT-TGAACCGGATCGAGGGTTGCAGCAGTAGGATCGGCAGCAC
323 CGGAGTTCATTCCCAGTCTAAGATCAG-ACCAAACCGAGAGTTGCAGCAGCAAGATCGGCAGCAC
* * * * *
1536294 GTAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGC
387 GCAAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
1536359 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCCTAAG-AT-C-G-G---A
452 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * * *
1536417 ----C---C---G----GA--A-A--GAGGTTTACGGCAGCACATGCTGGTCTCGGGCATGTGCT
517 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGACATGTGCT
** * * ** * * **
1536463 GGTGCCGTATTTTTCTTCGTAGGGGCGCCATTGCCGGAGCATCACCGAAGAACCTGACCGATGGC
582 GGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCACCGGAGAACCTGACCGGCGGC
** * * * * * *
1536528 ATTGAAGTTCC-AGTGGTCGGGGGGGTCGAGGGGTTGTGCCCACATGATGTGCGATGCGTGCTGG
647 ATTGGGGTTCCGA-CGATCGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
** ** *
1536592 TACTTGGCCCTTATATTAACCCCCTATCCCTCATCAAACCTATAGAAATCACACCCCCTTAAAGA
710 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* *
1536657 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGCGACACTTTAT
775 GCATTTGAGATTTTACAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
1536722 TCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAAT
839 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
1536785 AAAAATACAAGAATCATGTCTACCAAGTTTGGGGACAAAAATCCATT-CGAAAAAATTTTAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTTAAAAA
* * * * *
1536849 ATCCCGAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAAC
65 ATCTCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* **
1536914 TTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
130 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
** *
1536979 GAAATATGAAGATGTGGTTAAACCCACCTAGCACCCTATCAATCCACGGCTTGCGCATCCCGTCT
195 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCT
* * * * ** *
1537044 CTCTGGCCGGCGTGGTGCCTGCCCGCCCG-CCTGCCCGCTCGTTTTAATTGGTTGGCTTAGGCAT
260 CTCTGGCC-GCATAGTGCCCGACCGCCCGTCC-GCCCGCTCG-TTTCGTCGGTTGGCTTAGGCAT
* * * * * * * * *
1537108 ACGGAGTTCATTCCCAGTCTAAGATC-GAATCAGATCGAGGGTTACGGCAGTAGGATTGGCAGCA
322 ACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAAACCGAGAGTTGCAGCAGCAAGATCGGCAGCA
* * * * * * * *
1537172 CACAAA-GGGGACCCGACCGATCCTCGGCTGGTGCATGCC-GCCCCTCTGGCAGGTTAAGCGCCC
386 CGCAAAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT-CCTGCCCCTCTGGCCGGCTGAGCGCCC
* *
1537235 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGACTTCATTCCCAGTC-AAGCATACGGAGTT
450 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
** * * * * *
1537299 CATTCCCAGTCTAAGATCAGACTGGA-TCGAGGGTTGTGGCAGCACATGTTGCGCTCGGGCATGT
515 CATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGACAGCACATGCTGGGCTCGGACATGT
* * ** * *
1537363 GCTGGTGCCGCATTTTT-TAAT-GCCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCG
579 GCTGGTGCCACATTTTTCT--TCGTCGGGGCACCATCACCGAAGCATCACCGGAGAACCTGACCG
* * * *
1537426 ACGGCATTGGGGTTCCGGCGATCGGGTGGGCCGGGGGGTGGTGTGCGCACATGATGTGTGATGGG
642 GCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGG-GGTGTGCGCACATGATGTGCGATGGG
* * *
1537491 TGCTGGTAGTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACA-CTCCT
704 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
**
1537555 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTATTAAAGTGTCTGAAATGGGGACA
769 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA-TAGCCATTAAAGTGTCTGAAATGGGGACA
1537620 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
833 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
1537685 CAAC
898 CAAC
* * * *
1537689 AAGAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTACTTTCGAAAAAATTTTAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * ** * * * *
1537754 TCCCGAACCGTAAAAAGTTTTAAAGATCGTGAAAAATAGAAAATGAGTCGTCTTGCCACGAAACT
66 TCTCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * ** *
1537819 TCACGTGAAGGCTTAAAGGACCATTGTGTGAATTTACAAGCCATAAAAATGGTATCAGCACGTAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
1537884 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTC
* * *
1537949 TCTGGCCGGCGTAGTGCCCG-CCTG--C--CCGCCCGCGCGTTTCGTCGGTTGGCTTAGGCATGC
261 TCTGGCC-GCATAGTGCCCGACC-GCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * *** * * *** * * * * *
1538009 GGAGTTCATTCCTAGTCTAAGATCGGACTGGACTGAGGGTTATGGTAGCAGGATTGGTAGCACGT
324 GGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGAGTTGCAGCAGCAAGATCGGCAGCACGC
* ** * * *
1538074 AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCGACTGAGCGCCTGCAC
389 AAAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
1538139 GCTCGTTTCGTGGGTTGACTTGGCATACGGAGTTCATTCCCAGTCTAACCAAACGGAGTTCATTC
454 GCTCGTTTCGTGGGTTGAC-T----TA--G-G--------CA---T------ACGGAGTTCATTC
* * *
1538204 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTCCGACAGCA
494 CCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCA
* * * *
1538269 CATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTCATCAGGG-----T-A-C----CAT
559 CATGCTGGGCTCGGACATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGAAGCAT
* * * **
1538323 CACCGGAGAACCTGACCAGCGACTTTGGGGTTCCGACGATCAAGGGGGCCGGGTAAGGGTGTGCG
624 CACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG---GGGTGTGCG
*
1538388 CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
686 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
1538453 CGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGATTGCTGCCAGTAGCCATTAAT
751 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA-TAGCCATTAAA
1538518 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
815 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
1538583 GAATATTTTTGCGCATGCCAAC
880 GAATTTTTTTGTGCATGCCAAC
* * * *
1538605 -AAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACACCTTTCGAAAAAATTTTAAAAAA
1 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * * *
1538669 TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
66 TCTCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
1538734 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
131 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * **
1538799 AAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTATCTC
196 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTC
* ** * * * *
1538864 TCTGGCCGACGA-AGCGCTTGCCCGCCCGCCCGCTCGCTAGTTTCGTCGGTTGGCTTAGGCATAC
261 TCTGGCCG-C-ATAGTGCCCGACCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
1538928 GGAGTTCATTCCCAGTCTAAGATC
324 GGAGTTCATTCCCAGTCTAAGATC
1538952 GCATCGCACC
Statistics
Matches: 10270, Mismatches: 2074, Indels: 1814
0.73 0.15 0.13
Matches are distributed among these distances:
861 52 0.01
862 11 0.00
863 1 0.00
865 2 0.00
866 2 0.00
868 2 0.00
869 1 0.00
870 1 0.00
871 8 0.00
872 385 0.04
873 581 0.06
874 293 0.03
875 6 0.00
876 1 0.00
877 3 0.00
878 107 0.01
879 172 0.02
880 85 0.01
881 11 0.00
882 21 0.00
883 17 0.00
884 13 0.00
885 3 0.00
886 23 0.00
887 193 0.02
888 12 0.00
889 9 0.00
890 6 0.00
891 17 0.00
892 13 0.00
893 11 0.00
894 10 0.00
895 352 0.03
896 167 0.02
897 349 0.03
898 790 0.08
899 644 0.06
900 369 0.04
901 33 0.00
902 552 0.05
903 195 0.02
904 400 0.04
905 81 0.01
906 18 0.00
907 318 0.03
908 50 0.00
909 37 0.00
910 153 0.01
911 170 0.02
912 19 0.00
913 31 0.00
914 24 0.00
915 398 0.04
916 157 0.02
917 19 0.00
918 18 0.00
919 81 0.01
920 15 0.00
921 3 0.00
923 18 0.00
924 9 0.00
925 31 0.00
926 115 0.01
927 9 0.00
928 9 0.00
929 9 0.00
930 14 0.00
931 18 0.00
932 24 0.00
933 190 0.02
934 5 0.00
935 14 0.00
936 27 0.00
937 515 0.05
938 128 0.01
939 39 0.00
940 33 0.00
941 6 0.00
942 13 0.00
943 11 0.00
944 16 0.00
945 10 0.00
946 6 0.00
947 5 0.00
948 1 0.00
949 8 0.00
950 12 0.00
951 13 0.00
952 33 0.00
953 8 0.00
954 8 0.00
955 18 0.00
956 7 0.00
957 19 0.00
958 11 0.00
959 14 0.00
960 12 0.00
961 22 0.00
962 5 0.00
963 17 0.00
964 16 0.00
965 8 0.00
966 14 0.00
967 6 0.00
968 16 0.00
969 18 0.00
970 16 0.00
971 15 0.00
972 8 0.00
973 6 0.00
974 8 0.00
975 5 0.00
976 2 0.00
977 17 0.00
978 8 0.00
979 2 0.00
980 18 0.00
981 6 0.00
982 7 0.00
983 13 0.00
984 17 0.00
985 14 0.00
986 14 0.00
987 30 0.00
988 10 0.00
989 16 0.00
990 14 0.00
991 17 0.00
992 33 0.00
993 11 0.00
994 11 0.00
995 9 0.00
996 14 0.00
997 13 0.00
998 10 0.00
999 12 0.00
1000 21 0.00
1001 9 0.00
1002 21 0.00
1003 13 0.00
1004 11 0.00
1005 25 0.00
1006 20 0.00
1007 28 0.00
1008 27 0.00
1009 23 0.00
1010 22 0.00
1011 23 0.00
1012 20 0.00
1013 18 0.00
1014 14 0.00
1015 9 0.00
1016 18 0.00
1017 9 0.00
1018 26 0.00
1019 14 0.00
1020 7 0.00
1021 6 0.00
1022 1 0.00
1023 20 0.00
1024 108 0.01
1025 110 0.01
1026 76 0.01
1027 30 0.00
1028 21 0.00
1029 27 0.00
1030 49 0.00
1031 48 0.00
1032 66 0.01
1033 49 0.00
1034 35 0.00
1035 24 0.00
1036 30 0.00
1037 27 0.00
1038 44 0.00
1039 30 0.00
1040 28 0.00
1041 54 0.01
1042 27 0.00
1043 26 0.00
1044 18 0.00
1045 12 0.00
1046 31 0.00
1047 45 0.00
1048 23 0.00
1049 38 0.00
1050 18 0.00
1051 16 0.00
1052 24 0.00
1053 30 0.00
1054 26 0.00
1055 33 0.00
1056 36 0.00
1057 24 0.00
1058 24 0.00
1059 13 0.00
1060 24 0.00
1061 52 0.01
1062 9 0.00
1063 47 0.00
1064 18 0.00
1065 8 0.00
1066 11 0.00
1067 16 0.00
1068 13 0.00
1069 40 0.00
1070 12 0.00
1071 2 0.00
1072 6 0.00
1073 5 0.00
1074 6 0.00
1075 8 0.00
1076 14 0.00
1077 15 0.00
1078 4 0.00
1079 5 0.00
1080 11 0.00
1081 2 0.00
1083 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCTCAAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGCATAGTGCCCGACCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCAAACCGAGAGTTGCAGCAGCAAGATCGGCAGCACGCAA
AGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCACATGCTGGGCTCGGACATGTGCTGGTG
CCACATTTTTCTTCGTCGGGGCACCATCACCGAAGCATCACCGGAGAACCTGACCGGCGGCATTG
GGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
Found at i:1530886 original size:26 final size:26
Alignment explanation
Indices: 1530850--1530899 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1530840 GACTTAGGCC
1530850 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
1530876 TACGGAGTTCATTCCTAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
1530900 ATCAGACCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:1532847 original size:26 final size:26
Alignment explanation
Indices: 1532816--1532868 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1532806 GTAGACTTAG
*
1532816 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
1532842 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
1532868 G
1 G
1532869 ATCGGACTCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:1533755 original size:26 final size:26
Alignment explanation
Indices: 1533718--1533770 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1533708 GATGACTTAG
*
1533718 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
**
1533744 GCATACGAAGTTCATTCGTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1533770 G
1 G
1533771 ATTGGACCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1536718 original size:873 final size:872
Alignment explanation
Indices: 1532842--1538952 Score: 6714
Period size: 873 Copynumber: 6.9 Consensus size: 872
1532832 CCCAGTCTAA
* * * * * *
1532842 GCATACGGAGTTCACTCCCAGTCTAAGATCGGACTCGGACCGAGGGTTGCAGTAGCACATTCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGGACCGAGGGTTACGGCAGCACATGCTGG
* * * * *
1532907 GCTCGGGCATGTGCTGGTGCCGAATTTTTCTCCGTCGGGGAACC--TGACCGGA-CTATCGCCGG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATTG-CCGGAGC-ATCACCGG
** * *
1532969 AGAACCTGACCGGTGGCATTAGGGTTCCGACGATC-----GG--GGGGGTGTGCG-CACATGATG
128 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGTGTGCCACATGATG
*
1533026 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
1533091 ATACCCCCTTAAAGATCATTTGAGATTTTACAGGTTTCCTGCTAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
1533156 ATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTATTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
1533221 TGTGCTTGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * ** * *
1533286 AAATTTTAAAAAATCTCGAACCGTAAAATGTTTTGAAAATTGTGAAAAATAGAAAATGAGTAGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
*
1533351 TT-CTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATG
518 TTGC-CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
1533415 GCATTGGCACATAGAAATATGAAGGTGTGGCTAAACCCACCTACCAACCTATCGATCCACGGCTT
582 GCATTGGCA-TTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
1533480 GTGCATCTTC-TCTCTCTGGCC-AGCGTAGTGCCCGCCTGCCCGCCTGCCCGCCCGCCGCTCGTT
646 GCGCATC-CCGTCTCTCTGGCCGA-CGTAGTG--C-CC-G--C-CC-GCCCG--C-CCGCTCATT
* * * * * ** ** **
1533543 TCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGGCCGAGCATTGT
698 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGAACCGGATCGAGGGTTAC
* * * * * * * * * *
1533608 GGCAACATGATCGACAGCATGCAGAGGGGGACCCGACTGATCCACGGCTTCCACATCCCGCCACT
763 GGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * * * *
1533673 CTGGCTGACTGAGCACCCGCACGCTCGTTTTGTGAGATGACTTAG
828 CTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
1533718 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCGTAGTCTAAGATTGGACCATAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-CG--G---A--C-----C-------GG-----AC
* * * * * *
1533783 CGAGGGTTGCGACAGCACATGCTTGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGG
40 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* * *** * ** * ** * *
1533848 CACCATTACAGGAGCATTGTCAGAGAACCTGACCGGTGGCATTGGTGTTTTGGCGGTC-GGGGGG
105 CACCATTGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* * *
1533912 CCGGAGG-GTGTGCGCACATGATGTTCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTA
170 CCGGGGGTGTGTGC-CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
1533976 TCCCTCATCAAACCTCAAGAACTCACAGCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG
234 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
1534041 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
299 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * ** * *
1534106 CTCGAGTTTTTAGCTGAATTTTTTTATGCATAACAAAAAAAATACAAGGATCACGTCTACCAAGT
364 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
* * *
1534171 TTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATC
429 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* * *
1534236 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCCCGTGAAGGCTTAAGGGACCATTGTA
494 GTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
1534301 TGAATTTACAAAGCCATAAAAATGGCATTGGCATACAGAAATATGAAGATGTACCTAAACCCACC
559 TGAATTTAC-AAGCCATAAAAATGGCATTGGCAT-TAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
1534366 TACCACGCTATCGATCCATGGCTTGTGCATCCCGTCTCTCTGGCC-AGTGTAGTGCCCACCCGCC
622 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTG----CCCGCC
* *
1534430 CGCCCGTCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTTCC-AGTCTAAGA
682 CG-CC--C-GCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCA-TTCCAAGTCTAAGA
* * * * * * * *
1534494 TTGAACTGGACCAAGGGTTGTAC--CAGCAGGATTGGCAGCATGCAGAGGGGGACCCGATCGATC
742 TCGAACCGGATCGAGGG-T-TACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATC
** ** * * * * **
1534557 CTTGGCTTGCGCATCCAACCCCTCTGGCCGGCTGAGCGCGCACATGCTTTTTTCGTGGGTTGACT
805 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
1534622 TAG
870 TAG
1534625 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCAAAGATCGGACCGGAC
1 GCATACGGAGTTCA-T-----TC----C---C--AG-----T--C--T--AAGATCGGACCGGAC
* * *
1534690 CGAGGGTTGCGGCAGCATATGCTGGGCTCGGGCATGTGCTGGTGCAGCATTTTTCTTCGCC-GGG
40 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* * *
1534754 CACCA-T--C---GC-T----GCAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGT
105 CACCATTGCCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* * * *
1534808 CGGGGGGTGTGTG-CAAATGATGTGCGATGAGTGCTGGTACTTGGCCCTTATATTGGGCCCCTAT
170 CCGGGGGTGTGTGCCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
*
1534872 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTC
235 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
1534937 CAGTAGCCATTAAAGTGTC-CAAATTGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
300 CAGTAGCCATTAAAGTGTCTGAAA-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
1535001 TTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCAAAAAAAAAATACAAGGATCATGTCTACTAGG
364 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC-CAACAAAAATACAAGGATCATGTCTACCAAG
**
1535066 TTTGGGGCCAAAACTGTTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
428 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* * * * *
1535131 CATGAAAAATAGAAAATGAGTCATCTTGCCATGAACCATCACGTGAAGGCTTAAGGGGCCATTGT
493 CGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * *
1535196 ATGAATTTACAAGCCAGAAAAATGGCATTGGCATGCAGAGATATGAAGATGTGCCTAAACCCACC
558 ATGAATTTACAAGCCATAAAAATGGCATTGGCAT-TAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
1535261 TACCACCCTATCGATCCACGGCTTGCGCAGCCCGTCTCTCTTGCCGACATAGTGCCCGTCCGCCC
622 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
* * *
1535326 GCCCGCT-AGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC-TTTCACAGTCTAAGAAT-GGACT
687 GCCCGCTCA-TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCA-AGTCTAAG-ATCGAACC
* * * * * *
1535388 GGACCGAGGGTTGCTGCAGCAGGATCGACAGTACGTAGAGGGGGACCCGATCGATCCCCGGCTTG
749 GGATCGAGGGTTACGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTG
** ** * *
1535453 CGCATCTTGCCCCTCTGGCCGGTTGAGCTCCCGCAAGCTCGTTTCGTGGGTTGACTTAG
814 CGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
1535512 GCATACGGAGTTCACTCCCAGTCTAAGATCGGACCGGACAGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* * * * ***
1535577 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATTGCCGGAGCATCACCGGAGA
* * * * * *
1535642 ATCAGATCGGCGGCATTGAGGTTCCGATGATCGGGGGGGCCGGGAGGTGTGTG-CACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGTGTGTGCCACATGATGTG
* * *
1535706 CGATGGATGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1535771 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
1535836 GGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAAATTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
1535901 TGCATGCCAACAAAAATAAAAGGATCACGTCTACTAAGTTTGGAGCCAAAACTCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*** * *
1535966 ATTTTAAAAAATCATAAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
* *
1536031 GCCATGAAACTTCCCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATATAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
1536096 TTGGCATTAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
585 TTGGCATTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * *
1536161 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGTCGGCCAGCTCGCTCATTTCGTCGATTGGCTTAGG
650 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGG
* * * * *
1536226 CATACGGAGTTCATTCCAAGTCTAGGATTGAACCGGATCGAGGGTTGCAGCAGTAGGATCGGCAG
715 CATACGGAGTTCATTCCAAGTCTAAGATCGAACCGGATCGAGGGTTACGGCAGCAGGATCGGCAG
* *
1536291 CACGTAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
780 CACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCC
* *
1536356 CGCACGCTCATTTCATGGGTTGACTTAG
845 CGCACGCTCGTTTCGTGGGTTGACTTAG
* ** * *
1536384 GCATACGGAGTTCATTCCCAGCCTAAGATCGGACCGGAAAGAGGTTTACGGCAGCACATGCTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
* ** * *
1536449 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTAGGGGCGCCATTGCCGGAGCATCACCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATTGCCGGAGCATCACCGGAGA
* ** * * *
1536514 ACCTGACCGATGGCATTGAAGTTCC-AGTGGTCGGGGGGGTCGAGGGGT-TGTGCCCACATGATG
131 ACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCG-GGGGTGTGTG-CCACATGATG
* ** ** *
1536577 TGCGATGCGTGCTGGTACTTGGCCCTTATATTAACCCCCTATCCCTCATCAAACCTATAGAAATC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
1536642 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
1536707 ATGGCGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
1536772 TGTGCATGCCAATAAAAATACAAGAATCATGTCTACCAAGTTTGGGGACAAAAATCCATT-CGAA
388 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAA
* * *
1536836 AAAATTTTAAAAAATCCCGAACCGCAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT
*
1536901 CTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* ** * *
1536966 GCATTGGCACATAGAAATATGAAGATGTGGTTAAACCCACCTAGCACCCTATCAATCCACGGCTT
582 GCATTGGCA-TTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * ** *
1537031 GCGCATCCCGTCTCTCTGGCCGGCGTGGTGCCTGCCCGCCCGCCTGCCCGCTCGTTTTAATTGGT
646 GCGCATCCCGTCTCTCTGGCCGACGT--AG--TGCCCGCCCGCCCGCCCGCTC-ATTTCGTCGGT
* * * *
1537096 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCAGATCGAGGGTTACGGCAGTAG
706 TGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGAACCGGATCGAGGGTTACGGCAGCAG
* ** * * * * * * *
1537161 GATTGGCAGCACACA-AAGGGGACCCGACCGATCCTCGGCTGGTGCATGCCGCCCCTCTGGCAGG
771 GATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGA
* *
1537225 TTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGACTTCATTCCCAG
836 CTGAGCGCCCGCACGCTCGTTTCGT-GG--G---T-----T---GA---C-TT---AG
* * * ** *
1537283 TCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGCAGCACATGT
1 ----GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGC
* * * *
1537348 TGCGCTCGGGCATGTGCTGGTGCCGCATTTTT-TAAT-GCCGGGGCACCATCGTCGGAGCATCAT
62 TGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT--TCGCCGGGGCACCATTGCCGGAGCATCAC
* *
1537411 CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGTGGGCCGGGGGGTGGTGTGCGCAC
125 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGT-GTGTGC-CAC
* * *
1537476 ATGATGTGTGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGA
187 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* **
1537541 GAACTCACA-CTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTATTAAAGTG
252 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
1537605 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
317 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* *
1537670 TTTTTTTGTGCATGCCAACAAGAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTACTT
382 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
1537735 TCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAGATCGTGAAAAATAGAAAATGA
447 CCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGA
* * *
1537800 GTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAAGGACCATTGTGTGAATTTACAAGCCATAA
512 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* ** *
1537865 AAATGGTATCAGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
577 AAATGGCATTGGCA-TTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
1537930 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCGCGTTTCGTCGGT
641 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGT
* * * * * *
1537995 TGGCTTAGGCATGCGGAGTTCATTCCTAGTCTAAGATCGGACTGGA-CTGAGGGTTATGGTAGCA
706 TGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCGAACCGGATC-GAGGGTTACGGCAGCA
* * * * *
1538059 GGATTGGTAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCG
770 GGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
*
1538124 ACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTT-G
835 ACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * ** * * * **
1538161 GCATACGGAGTTCATTCCCAGTCTAACCAAACGGAGTTCATTCCCAGTCTAAGCATACGG-AGTT
1 GCATACGGAGTTCATTCCCAGTCTAA--GATCGGA---C---CGGA-CCGAGGGTTACGGCAG--
* ** * ** * ** * *** * *
1538225 CATTCCCA-GTCTAAGATTAGACCA-GACCGAGGGTTCCGACAGCACATGCTGGGCTCGGGCATG
55 CA----CATG-CT-GGGCTCGGGCATG--TGCTGGTGCCG-CA--TTTTTCT----TC--GC-CG
* * * * *
1538288 TGCTGGTACCACATTTTTCTTCATCAGGGTACCATCACCGGAGAACCTGACC-AGCGACTTTGGG
102 -G--GGCA-C-CA----T-TGC--C--GG-AGCATCACCGGAGAACCTGACCGA-CGGCATTGGG
** *
1538352 GTTCCGACGATCAAGGGGGCCGGGTAAGG-GTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
151 GTTCCGACGATCGGGGGGGCCGGG---GGTGTGTGC-CACATGATGTGCGATGGGTGCTGGTACT
1538416 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
212 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
1538481 TTCAGATTTTACAGGATTGCTGCCAGTAGCCATTAATGTGTCTGAAATGGGGACACTTTTTTCAA
277 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
1538546 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGCGCATGCCAAC-AAAAT
342 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * *
1538610 ACAAGGATCATGTCTACCAAGTTTGGGACCAAAACACCTTTCGAAAAAATTTTAAAAAATCCCGA
407 ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGA
* *
1538675 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGT
472 ACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGT
1538740 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATAT
537 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-TAGAAATAT
* **
1538805 GAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTATCTCTCTGGC
601 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* *
1538870 CGACGAAGCGCTTGCCCGCCCGCCCGCTCGCT-AGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
666 CGACGTA--G--TGCCCGCCCGCCCGCCCGCTCA-TTTCGTCGGTTGGCTTAGGCATACGGAGTT
*
1538934 CATTCCCAGTCTAAGATCG
726 CATTCCAAGTCTAAGATCG
1538953 CATCGCACCC
Statistics
Matches: 4490, Mismatches: 541, Indels: 365
0.83 0.10 0.07
Matches are distributed among these distances:
861 70 0.02
862 8 0.00
863 1 0.00
865 2 0.00
867 1 0.00
868 2 0.00
869 1 0.00
871 7 0.00
872 394 0.09
873 591 0.13
874 305 0.07
875 3 0.00
876 31 0.01
877 3 0.00
878 83 0.02
879 79 0.02
880 1 0.00
881 3 0.00
882 5 0.00
883 9 0.00
884 3 0.00
885 6 0.00
886 3 0.00
887 164 0.04
888 7 0.00
889 8 0.00
890 9 0.00
891 9 0.00
892 2 0.00
893 1 0.00
894 5 0.00
895 320 0.07
896 172 0.04
897 6 0.00
898 1 0.00
899 80 0.02
900 82 0.02
901 60 0.01
902 40 0.01
903 151 0.03
904 383 0.09
905 75 0.02
906 10 0.00
907 219 0.05
908 12 0.00
909 357 0.08
910 98 0.02
911 2 0.00
912 5 0.00
913 2 0.00
914 6 0.00
915 377 0.08
916 131 0.03
917 4 0.00
919 65 0.01
920 1 0.00
922 2 0.00
924 1 0.00
926 1 0.00
927 1 0.00
929 2 0.00
931 3 0.00
932 2 0.00
933 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (872 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATTGCCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGTGTGCCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCAAGTCTAAGATCGAACCGGATCGAGGGTTACGGCAGCAGGATCGGCAGC
ACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:1537300 original size:25 final size:25
Alignment explanation
Indices: 1537262--1537321 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
1537252 GTTGACTTAG
1537262 GCATACAGACTTCATTCCCAGTCAA
1 GCATACAGACTTCATTCCCAGTCAA
* *
1537287 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTC-AA
1537313 G-AT-CAGACT
1 GCATACAGACT
1537322 GGATCGAGGG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 4 0.13
25 23 0.77
26 3 0.10
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (25 bp):
GCATACAGACTTCATTCCCAGTCAA
Found at i:1538239 original size:26 final size:26
Alignment explanation
Indices: 1538161--1538239 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
1538151 GGTTGACTTG
1538161 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1538187 CCAAACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1538213 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1538239 G
1 G
1538240 ATTAGACCAG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1538667 original size:915 final size:918
Alignment explanation
Indices: 1537272--1538952 Score: 2628
Period size: 915 Copynumber: 1.8 Consensus size: 918
1537262 GCATACAGAC
** * **
1537272 TTCATTCCCAGTCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTG
1 TTCATTCCCAGTCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCCG
* * * *
1537337 GCAGCACATGTTGCGCTCGGGCATGTGCTGGTGCCGCATTTTTTAATGCCGGGGCACCATCGTCG
66 ACAGCACATGCTGCGCTCGGGCATGTGCTGGTACCACATTTTTT-AT------GCACCA-CG-CG
* * * * * **
1537402 GAGCATCATCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGTGGGCCGGGGGGTGG
122 GACCATCACCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCAGGTGGGCCGGGAAGTGG
* *
1537467 TGTGCGCACATGATGTGTGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCTCCTATCCCTCATC
187 TGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * **
1537532 AAACCTCGAGAACTCACACTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTTA
252 AAACCTCGAGAACTCACACCCCTTAAAGAGCATTTCAGATTTTACAGGATTGCTGCCAGTAGCCA
1537597 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
317 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
1537662 TAGCTGAATTTTTTTGTGCATGCCAACAAGAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA
382 TAGCTGAATATTTTTGCGCATGCCAACAAGAATACAAGGATCATGTCTACCAAGTTTGGGACCAA
* * *
1537727 AACTACTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAGATCGTGAAAAATA
447 AACTACTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA
* * *
1537792 GAAAATGAGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAAGGACCATTGTGTGAATTTACA
512 GAAAACGAGTCATCTTGCCACGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACA
*
1537857 AGCCATAAAAATGGTATCAGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
577 AGCCATAAAAATGGCATCAGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * *
1537922 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA-G-TGCCCGCCTGCCCGCCCGCGCG
642 CGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGAACGCTGCCCGCCCGCCCGCCCGCGAG
* *
1537985 TTTCGTCGGTTGGCTTAGGCATGCGGAGTTCATTCCTAGTCTAAGATCGGACTGGACTGAGGGTT
707 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTT
1538050 ATGGTAGCAGGATTGGTAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCC
772 ATGGTAGCAGGATTGGTAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCC
1538115 CTTTGGCCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTGGCATACGGAGTTCATTCCC
837 CTTTGGCCGACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTGGCATACGGAGTTCATTCCC
1538180 AGTCTAACCAAACGGAG
902 AGTCTAACCAAACGGAG
*
1538197 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTCC
1 TTCATTCCCAGTC-AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCC
* *
1538262 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCT-T-CATCA-G-GGTACCAT
65 GACAGCACATGCTGCGCTCGGGCATGTGCTGGTACCACATTTTT-TATGCACCACGCGG-ACCAT
*
1538323 CACCGGAGAACCTGACC-AGCGACTTTGGGGTTCCGACGATCAAGG-GGGCCGGGTAAG-GGTGT
128 CACCGGAGAACCTGACCGA-CGACATTGGGGTTCCGACGATC-AGGTGGGCCGGG-AAGTGGTGT
1538385 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
190 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
1538450 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGATTGCTGCCAGTAGCCATT
255 CCTCGAGAACTCACA-CCCCTTAAAGAGCATTTCAGATTTTACAGGATTGCTGCCAGTAGCCATT
*
1538515 AATGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
319 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
1538580 GCTGAATATTTTTGCGCATGCCAACAA-AATACAAGGATCATGTCTACCAAGTTTGGGACCAAAA
384 GCTGAATATTTTTGCGCATGCCAACAAGAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAA
1538644 C-ACCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG
449 CTA-CTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAG
* *
1538708 AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
513 AAAACGAGTCATCTTGCCACGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAA
** * *
1538773 GCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATC
578 GCCATAAAAATGGCATCAGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * *
1538838 GATCCACGGCTTGCGCATCCTATCTCTCTGGCCGACGAAGCGCTTGCCCGCCCGCCCGCTCGCTA
643 GATCCACGGCTTGCGCATCCCATCTCTCTGGCCGACGAA-CGC-TGCCCGCCCGCCCGCCCGCGA
1538903 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
706 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
1538953 CATCGCACCC
Statistics
Matches: 690, Mismatches: 54, Indels: 30
0.89 0.07 0.04
Matches are distributed among these distances:
914 4 0.01
915 380 0.55
916 137 0.20
917 1 0.00
918 4 0.01
919 65 0.09
925 14 0.02
926 84 0.12
927 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (918 bp):
TTCATTCCCAGTCAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTCCG
ACAGCACATGCTGCGCTCGGGCATGTGCTGGTACCACATTTTTTATGCACCACGCGGACCATCAC
CGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCAGGTGGGCCGGGAAGTGGTGTGCGCAC
ATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCTTAAAGAGCATTTCAGATTTTACAGGATTGCTGCCAGTAGCCATTAAAGTGT
CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
ATTTTTGCGCATGCCAACAAGAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTACTTT
CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
TCATCTTGCCACGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATCAGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
GCTTGCGCATCCCATCTCTCTGGCCGACGAACGCTGCCCGCCCGCCCGCCCGCGAGTTTCGTCGG
TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTATGGTAGCA
GGATTGGTAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTTTGGCCG
ACTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTGGCATACGGAGTTCATTCCCAGTCTAACC
AAACGGAG
Found at i:1540709 original size:26 final size:26
Alignment explanation
Indices: 1540673--1540725 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1540663 GTTGACTTAG
*
1540673 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
1540699 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
1540725 G
1 G
1540726 ATCAAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:1541607 original size:26 final size:26
Alignment explanation
Indices: 1541571--1541623 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1541561 CTTGACTTAG
**
1541571 GCATACAGAGTTCATTCCTGGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1541597 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1541623 G
1 G
1541624 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1544115 original size:26 final size:26
Alignment explanation
Indices: 1544078--1544130 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
1544068 GTTGACTTAG
* * *
1544078 GCATACAGAGTTTATTCCTAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1544104 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
1544130 G
1 G
1544131 ATCGTACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1545020 original size:26 final size:26
Alignment explanation
Indices: 1544981--1545033 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1544971 GTTGACTTAG
*
1544981 GCATACGGAATTCATTGCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
1545007 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
1545033 G
1 G
1545034 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:1545919 original size:26 final size:26
Alignment explanation
Indices: 1545883--1545935 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1545873 CTTGACTTAG
1545883 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1545909 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1545935 G
1 G
1545936 ATCAGAATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1545983 original size:902 final size:895
Alignment explanation
Indices: 1541640--1547974 Score: 8362
Period size: 893 Copynumber: 7.1 Consensus size: 895
1541630 CCGGACATGA
*
1541640 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAA
1 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
1541705 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
66 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
1541770 TTTTCAAATGGTCCCAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAA
131 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
1541834 CAAAAATACAAGGACCACGTCTACCATGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAA
196 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCAAAAAAATTTTAAAAA
* *
1541899 ATCTCGAACCGTAAAAAGTTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
260 ATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
1541964 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTA
325 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* ***
1542029 GAAATATTAAGATGTGCCTAAACCCACCTACCACCCTAAAAATCCACGGCTTGCGCATCCCGTCT
390 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* *
1542094 ATCTGGCCGGCGTAGTGCCCGCCTGCCCACCCGCCCGCTCGTTTCGTCGGTTGG-TTAAGGCATA
455 CTCTGGCCGGCGTAGT----GCCTGCCCACCCGCCCGCTCGTTTCGTCGATTGGCTT-AGGCATA
** ** * *
1542158 TAGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCAGTAGCAAGATCGGCAGCACG
515 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CCAGGGTTGCGGTAGCAGGATCGGCAGCACG
* * * * * * * * *
1542223 AAGAGGGGGACCCGACCTATCCCTGACATGCGCATACCGCCACTCTGGCCGGTTGAGTGCCCGCA
579 TAGAAGGGGACCCGACCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
** * *
1542288 CGCTTGTTTCGTGGGTTCACTTAGGCATATGGAGTTCATTCCCAG--T---C-TA---AG---A-
643 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * *
1542340 T--C-G-----GAT----C-GGACCGAGGGTTGCGACAGCACATACTGGGCTTGGGCATGTGCTG
708 TCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * *
1542392 GAGCTGCATTTTTCTTCACCGGGGCACAATCGCCGGCGCATCACCGGAGAACCTGATCGGCGGCA
773 GTGCCGCATTTTTCTTCGCCGGGGCACCATCGCC-GAGCATCACCGGAGAACCTGACCGGCGGCA
* * * *
1542457 TTGGGGTTCCGGGGATCGGGGCGGCCGTGGGGGTTGTGCACACATGATGTCCGATGGGTGC
837 TTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGG-TGTGCGCACATGATGTGCGATGGGTGC
1542518 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
1 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
1542583 ACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACTT
66 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
1542647 TTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTAG-GCATGCCA
131 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-GTGCATGCCA
* * * *
1542711 AGAAAAATACAAGGATCACATCTTCCAAGTTTGGGGCCAAAAAGCCTTCCAAAAAAATTTTAAAA
195 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCTTCCAAAAAAATTTTAAAA
* * * * *
1542776 AATGCCAAAAC-TCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGATTCGTCTTGCCATGAA
259 AATCCCGAACCGT-AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
1542840 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGCATTGGCATG
323 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * * *
1542905 TAGAAATATGAAGGTGTTCCTAAACCCTCCTACCACCCTATCGATACACGGCTTGCGCATCCCGT
388 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * * * *
1542970 CTCTCTGGCCGGACGTAGTGCCCGTCCGCCCGCCTGCTTGTTTCATCGGTTGGCTCAGGCATACG
453 CTCTCTGGCCGG-CGTAGTGCCTGCCCACCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACG
* * *
1543035 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGATTGGCAGCACATA
517 GAGTTCATTCCCAGTCTAAGATCAGACCGGACC-AGGGTTGCGGTAGCAGGATCGGCAGCACGTA
* * * *
1543100 AAAGGGGACCCGACCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCACCCGTACGC
581 GAAGGGGACCCGACCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * *
1543165 TCATTTCGTGGGTTGACTTAGGCATATGGAGTTGATTCCCAGCCTAAGCATAC-GAATTCATTCC
646 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * *
1543229 CAGTCTAAGATCGGACTAGACCGAGGGTTGTGTCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
711 CAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * *** *
1543294 CCGTATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTTGGAGAACCTGACCGGCAGCATTG
776 CCGCATTTTTCTTCGCCGGGGCACCATCGCCG-AGCATCACCGGAGAACCTGACCGGCGGCATTG
* * *
1543359 GGGTTTCGACGATC-GGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
840 GGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
1543414 TGGTACTTGGCCCTTATATTGGCCACCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAA
1 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
1543479 AGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
66 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
1543544 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA
131 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* **
1543609 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
196 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCAAAAAAATTTTAAAAA
* *
1543674 ATCCCGAACCGTAAAAGGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
260 ATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
1543739 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
325 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
** *
1543804 GAAATACAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGAATCCCGTCT
390 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * *
1543869 CTCTAGCCGGCG-A-AG--TGCCCGCCTGCCCGCGCGTTTCGTCGATTGGCTCAGGCATACGGAG
455 CTCTGGCCGGCGTAGTGCCTGCCCACCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAG
* * * * * * *
1543930 TTGATTTCCAGTCTAAGATCAGATCAGACCAAGGGTCGTGGTAGCAGGATCGGCAGCATGTAG-A
520 TTCATTCCCAGTCTAAGATCAGACCGGACC-AGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAA
** ** * * * * *
1543994 GGGGACTTGATTGATCCTCGGCTTGCACAACCTGCCCCTTTGGCCGGTTGAGCGCCCGCACGCTC
584 GGGGACCCGACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * * * *
1544059 GTTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCTAGTGTAAGCATACGAAGTTCATTCCCA
648 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
** *
1544124 GTCTAAGATC-GTACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGC
713 GTCTAAGATCAG-ACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * *
1544188 CGCATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCACCGGAGAACCTGAACGGCGGCATTGG
777 CGCATTTTTCTTCGCCGGGGCACCATCGCCG-AGCATCACCGGAGAACCTGACCGGCGGCATTGG
* *
1544253 GGTT-TGGCGATCGGGGGGGCCGGGGGGTGTTCGCACATGATGTGCGATGGGTGC
841 GGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
1544307 TAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
1 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
1544372 AGAGCATTTGAGATTTTACAGGGTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTT
66 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-T
*
1544437 TTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCA
130 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
1544501 ACAAAAATACAATGATCACGTCTACCAAGTTTGGAGCCAAAATTCCTTCCAAAAAAACTTTAAAA
195 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCAAAAAAATTTTAAAA
* * * *
1544566 AATCTCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
259 AATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
1544631 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATGAAAATGGCATTGGCATGC
324 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
*
1544696 AGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCCCGTC
389 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
1544761 TCTCTGGTCGACGTAGTG-CTCGCCCGCCCGTCAGCCCCGCTCGTTTCATCGGTTGGCTTAGGCA
454 TCTCTGGCCGGCGTAGTGCCT-GCCC-ACC--C-G-CCCGCTCGTTTCGTCGATTGGCTTAGGCA
* * *
1544825 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGATTGTGGCT-GCAGGATCGGCAGC
513 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC-AGGGTTGCGG-TAGCAGGATCGGCAGC
* * * * * * *
1544889 ACGGAGAGGGGGACCCGACCGATCCCCGACTTGCACATCTCGCCCCTTTGGCCGACTGAGCGCCC
576 ACGTAGAAGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* *
1544954 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAATTCATTGCCAGTCTAAGCATACGGAGTT
640 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * *
1545019 CATTCCCAGTCTAAGATCGGACCGAACCGATGGTTTCGGGAGCACATGCTGGGCTCGGGCATGTG
705 CATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * *
1545084 CTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGCCAGAGCATCATCAGAGAACCTGACCGGTG
770 CTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGCC-GAGCATCACCGGAGAACCTGACCGGCG
* *
1545149 GCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGCGGTGTGCGCACATGATGTGCAATGGGTGC
834 GCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGC
* *
1545212 TGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACCCCCTTAA
1 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* ** *
1545277 AGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGTTATTAAAGTGTCTGAAATGGGGGCACTT
66 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
1545342 TCTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTGTGCATGCCAA
131 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * ** * *
1545407 CAAAAATACAAGGATCACGTCTACCTAGTTTGGGGACAAAACTAGTTTCCGGAAAAAATTTTAAG
196 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-T-CCTTCC-AAAAAAATTTTAAA
* *
1545472 AAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
258 AAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
1545537 ACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
323 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
1545602 CAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACGGCTTGCCCATCCCGT
388 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
1545667 CTCTCTGGCCGGCGAAGTGCCTGCCCACCCGCCCGCTCATTTTGTCGATTGGCTTAGGCATACGG
453 CTCTCTGGCCGGCGTAGTGCCTGCCCACCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGG
* * *
1545732 AGTTCATTCCCAGTCTAAGATCAGATCGGACCATGGGTTGCGGCAGCAGGATCGGCAGCACGCAG
518 AGTTCATTCCCAGTCTAAGATCAGACCGGACCA-GGGTTGCGGTAGCAGGATCGGCAGCACGTAG
** * * * * *
1545797 AAGGGGACCCGGTCGGTCCTCGGCTTGTGCATCCCGCCCCTCTGGCCGACTGAGCACCCGCACGT
582 AAGGGGACCCGACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
1545862 TCTTTTCGTCGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
646 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* *
1545927 CAGTCTAAGATCAGAATGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCCGGTG
711 CAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* ** *
1545992 TCGCATTTTTCTTCATCGGGGCACCAT---C--G--T---C-G-G-A-C-GA-------CATTTG
776 CCGCATTTTTCTTCGCCGGGGCACCATCGCCGAGCATCACCGGAGAACCTGACCGGCGGCATTGG
* * * ** *
1546035 GTTTTCGACGATCGGGGGGGCC-GGGGGTGTGCATACATGATGTCCGATGGGTGC
841 GGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
1546089 TGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAATCCTCAAGAACTCACACCCCCTTAA
1 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
1546154 AGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTT
66 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
1546219 TTTTCAAATGGTGACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCACGCCAA
131 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-A
* * *
1546284 AAAAAAATAGAGGGATCACGTCTACCAAGTTTGGGGCCAAAATGCCTTCCAAAAAAATTTT-AAA
195 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAT-CCTTCCAAAAAAATTTTAAAA
* *
1546348 AATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
259 AATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
1546413 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGCATGC
324 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
1546478 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
389 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
1546543 TCTCTGGCCGACG-A-AG--TGCCCA----CCCG--C----C--C-A----C--ATGC-T-C--A
454 TCTCTGGCCGGCGTAGTGCCTGCCCACCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGA
** * * * **
1546581 --T--TT-CCAGTCTAAGATTGGACCGGACCGAGGGTTGTGGTAGCATGATCAGCAGCACACAGA
519 GTTCATTCCCAGTCTAAGATCAGACCGGACC-AGGGTTGCGGTAGCAGGATCGGCAGCACGTAGA
* * * * *
1546641 ATGGG--CCGGCCGATCCCTGGCTTGCGCATCCTGCCCCTCTTGCCGGCTGAGCGCCTGCACGCT
583 AGGGGACCCGACCGATCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * *
1546704 CATTTCATGGGTTGACTTAGGGATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCC
647 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * *
1546769 AGTCTAAGATCAGACTAGAACGAGGGTTGCGGCAGCATATGCTAGGCTCAGGCATGTGCTGGTGC
712 AGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * **
1546834 CACATTTTTCTTCGCTGGGGCACCATCGTCGGAGCATCACCGGAGAATTTGACCGGCGGCATTGG
777 CGCATTTTTCTTCGCCGGGGCACCATCG-CCGAGCATCACCGGAGAACCTGACCGGCGGCATTGG
* *
1546899 GGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
841 GGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
**
1546954 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAATCCCTTAA
1 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
1547019 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTT
66 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
1547084 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
131 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
1547149 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTGAAAA
196 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAATCCTTCCAAAAAAATTTTAAAAA
* ** ** *
1547214 ATCCCAAACCACAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGTGTCGTCTTGCCATGAAAC
260 ATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * **
1547279 TTTACGTGAAGGCTTAAGGGACCGTTGTTATTTATTTACAAGCCATAAAAATGGCATTGGCATGC
325 TTCACGTGAAGGCTTAAGGGACCATTG-TATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
* *
1547344 AGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGACTTGCGCATCCCGTC
389 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * * *
1547409 TATCTGGTCGGCGTAGTGCCCGCCCTCCCGCCCGCTCATTTCGTC-AGTTGGCTTAGGCATACAG
454 TCTCTGGCCGGCGTAGTGCCTGCCCACCCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATACGG
* ** * * * ** *
1547473 AGTTTATTCCCAGTCTAAGATGGGATCGGACTGAGGGTTACGGTAGCAGGATCGATAGCACATAG
518 AGTTCATTCCCAGTCTAAGATCAGACCGGAC-CAGGGTTGCGGTAGCAGGATCGGCAGCACGTAG
* * * * *
1547538 AGGGGGACCCGATCGATCCTCAGCTTACGCATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
582 AAGGGGACCCGACCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
*
1547603 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
646 TCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * * * *
1547668 CAGTCTAAGATCAGACCAGG-CTGAGGGTTACGGAAGCACATGTTGGGCTCGAGCTTGTGCTGGT
711 CAGTCTAAGATCAGA-CTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
* ** * * * *
1547732 GCCACATTTTTCTTCGTTGGGGCACCATCATCGGAGCATCACCAGAGAACCTGACCGACGGCATT
775 GCCGCATTTTTCTTCGCCGGGGCACCATC-GCCGAGCATCACCGGAGAACCTGACCGGCGGCATT
* * * * *
1547797 GGTGTTCCGGCGATCGGGGGCGTCGGAGGGGGTGTGCGCAAATGATGTGC-ATTGGGTGT
839 GGGGTTCCGGCGATCGGGGG-GGCCG-GGGGGTGTGCGCACATGATGTGCGA-TGGGTGC
*
1547856 TGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
1 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
1547921 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGT-TTTGAAAT
66 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
1547975 CCCGAACCGT
Statistics
Matches: 4807, Mismatches: 514, Indels: 249
0.86 0.09 0.04
Matches are distributed among these distances:
840 1 0.00
841 184 0.04
843 51 0.01
844 3 0.00
846 1 0.00
847 1 0.00
848 1 0.00
849 1 0.00
850 1 0.00
851 1 0.00
852 4 0.00
853 1 0.00
854 2 0.00
855 1 0.00
857 2 0.00
858 1 0.00
859 1 0.00
864 78 0.02
865 304 0.06
866 107 0.02
867 5 0.00
868 1 0.00
870 4 0.00
871 6 0.00
873 1 0.00
874 78 0.02
875 312 0.06
876 13 0.00
877 266 0.06
878 407 0.08
879 35 0.01
880 3 0.00
882 3 0.00
885 1 0.00
886 3 0.00
887 2 0.00
888 2 0.00
889 5 0.00
890 2 0.00
891 16 0.00
892 182 0.04
893 555 0.12
894 54 0.01
895 3 0.00
896 145 0.03
897 326 0.07
898 61 0.01
899 106 0.02
900 232 0.05
901 18 0.00
902 495 0.10
903 227 0.05
904 69 0.01
905 200 0.04
906 6 0.00
907 215 0.04
908 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATCCTTCCAAAAAAATTTTAAAAAA
TCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTGCCTGCCCACCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCGGACCAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAAGG
GGACCCGACCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATT
TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
TAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
TTTTTCTTCGCCGGGGCACCATCGCCGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTC
CGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
Found at i:1547660 original size:26 final size:26
Alignment explanation
Indices: 1547624--1547676 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1547614 GTTGACTTAG
1547624 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1547650 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1547676 G
1 G
1547677 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1548413 original size:26 final size:26
Alignment explanation
Indices: 1548383--1548433 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1548373 TGACTTAGGG
*
1548383 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
*
1548409 ATACGAAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
1548434 ATCGAACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:1549303 original size:26 final size:26
Alignment explanation
Indices: 1549274--1549324 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1549264 TGACTTAGGG
*
1549274 ATACGGAGTTCATTCCCAGCCTAAGC
1 ATACGAAGTTCATTCCCAGCCTAAGC
*
1549300 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGCCTAAG
1549325 ATCGAACCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGCCTAAGC
Found at i:1549698 original size:891 final size:887
Alignment explanation
Indices: 1547984--1550851 Score: 3913
Period size: 891 Copynumber: 3.2 Consensus size: 887
1547974 TCCCGAACCG
*
1547984 TAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAG
1 TAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAG
*
1548049 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
* * * *
1548114 ATGTGCCTAAACCCACCTTCCACCCTATTGATCCATGGCTTACGCATCCTGTCTCTCTAGCCGGC
131 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTAGCCGGC
* *
1548179 GTA-G--CACCCGCCCG-CCG--C-CCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
196 GTAGGCCCGCCCGCCCGTCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
* * **
1548237 TCCCAGTCTAAGATCAGACCAGACTGAGGGAGGCAGCACTAGGATCGACAGCACCCAGAGGGGGA
261 TCCCAGTCTAAGATCAGACCAGACTGAGGGTGGCAGCAATAGGATCGACAGCACGTAGAGGGGGA
*
1548302 CCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTTGCCGACTGAGCGCCCGCACGCTCATTTC
326 CCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTTGCCG-CTGAGCGCCCGCACGCTCATTTC
*
1548367 ATGGGTTGACTTAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCTAGTCTA
390 ATGGGTTGACTTAGGGATACGGAGTTCATTCCCAG-CTAAGCATACGAAGTTCATTCCCAGTCTA
* *
1548432 AGATCGAACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATT
454 AGATCGAACCGAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATT
* * * *
1548497 TTTCTTCCCCAGGCCACCATCGCCGGAGCATCGTCGGAGAACTTGACCGACGGCATTAGGGTTCC
519 TTTCTTTCCCAGGGCACCATCG-CGGAGCATCATCGGAGAACTTGACCGGCGGCATTAGGGTTCC
1548562 GACGATCGGGGGGGCCGAGGG-GGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGG-CC
583 GACGATCGGGGGGGCCGAGGGCGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCC
*
1548625 TTATATTGGCCTCCTATAACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGACCATTTGAGA
648 TTATATTGGCCTCCTATAACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
1548690 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
713 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
1548755 ACAGAATCTTATACACTTCGAGTTTTTAGCT-ATATTTTTTTTGTGCATGCCAACAAAAATACAA
778 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-A-TTTTTTTGTGCATGCCAACAAAAATACAA
*
1548819 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAACAATTT
841 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA-AATTT
* ** * *
1548867 T-AAAAGTTTTGAAAATTGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAG
1 TAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAG
* *
1548931 GCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATAAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
* * * * *
1548996 ATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCACATCTCGTCTCTCAAGCCGGC
131 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTAGCCGGC
1549061 GTAGCGCCCGCCCGCCCGTCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
196 GTAG-GCCCGCCCGCCCGTCCGCCCG-CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* *
1549126 ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTGGCAGCAGTAGGATCGACAGCATGTAGAGGGG
259 ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTGGCAGCAATAGGATCGACAGCACGTAGAGGGG
* * *
1549191 GACCCGATCGATCCCCGGCTTGCGCATCCTACCCCTCTTGCCAGCTGAGCGCCCGTACGCTCATT
324 GACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTTGCC-GCTGAGCGCCCGCACGCTCATT
*
1549256 TCGTGGGTTGACTTAGGGATACGGAGTTCATTCCCAGCCTAAGCATACGAAGTTCATTCCCAGTC
388 TCATGGGTTGACTTAGGGATACGGAGTTCATTCCCAG-CTAAGCATACGAAGTTCATTCCCAGTC
* **
1549321 TAAGATCGAACCGAACCGAGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCA
452 TAAGATCGAACCGAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA
1549386 TTTTTCTTTCCCAGGGCACCATCGCAGGAGCATCATCGGAGAACTTGACCGGCGGCATTAGGGTT
517 TTTTTCTTTCCCAGGGCACCATCGC-GGAGCATCATCGGAGAACTTGACCGGCGGCATTAGGGTT
** *
1549451 CCGGTGATCGGGGGGGCCGAGGGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
581 CCGACGATCGGGGGGGCCGAGGGCGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGC
*
1549516 CCTTATATTGGCCTCCTATAACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
646 CCTTATATTGGCCTCCTATAACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
1549581 GATTTTGCAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
711 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
1549646 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACAAAAATACAA
776 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* *
1549710 GGTTCACGTCTACCAAGTTTGGGGGCAAAACTCCTTTCGAAAAAGTTT
841 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA-TTT
* *
1549758 AAAAAATCCCGAACCGCAAAGAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTCCCAT
1 ------T-----A----AAA-AGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
* * *
1549823 GAAACTTCACATGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAATTGGCATTGGC
50 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
1549888 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATCC
115 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCC
* * *
1549953 CGTCTCTCTGGCCAGCGTAGTGCCCGCCTG--C-T-CGCCCGCTCGCTCGTTTCATCGGTTGGCT
180 CGTCTCTCTAGCCGGCGTAG-GCCCGCCCGCCCGTCCGCCCGC-CGCTCGTTTCATCGGTTGGCT
*
1550014 TAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTGGCAGCAATAGGATCG
243 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTGGCAGCAATAGGATC-
* * * * * * *
1550079 GCCA-CACGTAGAAGGGGACCCGGTCGATCCTCGGCTTGTGCATCCGGCCCTTCTGGCCTGCTGA
307 GACAGCACGTAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTTGCC-GCTGA
* * *
1550143 GCGCCCGCACGCTCGTTTCATGGGTTGACTGAGGCATACGGAGTTCATTCCCAG-T---C-T---
371 GCGCCCGCACGCTCATTTCATGGGTTGACTTAGGGATACGGAGTTCATTCCCAGCTAAGCATACG
* * *
1550200 AAG---A-T--C-G-----GA-C-AA--G-GCTGAGGGTTACGGTAGCACATGCTGGGCTCGGGC
436 AAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGC
* * * * * * * *
1550248 TTGTGCTGGTACCACATTTTTC-TTCATCGGGGCACCATCGTCGGAGCATCACCAGAGAACCTAA
501 ATGTGCTGGTGCCACATTTTTCTTTC-CCAGGGCACCATCG-CGGAGCATCATCGGAGAACTTGA
* *
1550312 CCGGCGGCATT-GGTGTTCCGACGATCGAGGGGGCCCGA-GGC-GGTGTGCGCAAATGATGTGCG
564 CCGGCGGCATTAGG-GTTCCGACGATCG-GGGGGGCCGAGGGCGGGTGTGCGCACATGATGTGCG
* ** *
1550374 ATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACAC
627 ATGGGTGTTGGTACTTGGCCCTTATATTGGCCTCCTATAACTCATCAAACCTCGAGAACTCACAC
*
1550439 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGG
692 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
1550504 GGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTTGATTTTTTAGCTG-ATTTGTTTTGT
757 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTGT
* *
1550568 GCGTGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
821 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG-AAAAA
1550633 TTT
885 TTT
** * *
1550636 TAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCACCATGCCA
1 T---AAA-----AA--GT------TTT-AAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCA
* *
1550701 TGAAAATTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTAG
49 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * **
1550766 CATGCAGAAATATGAAGATATGCCTAAACACACCTACCATCCTATCGATCCACGGCTTGTGCATC
114 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATC
* *
1550831 CCGTCTCTCTGGCCGACGTAG
179 CCGTCTCTCTAGCCGGCGTAG
1550852 TGCCTACCCG
Statistics
Matches: 1784, Mismatches: 146, Indels: 114
0.87 0.07 0.06
Matches are distributed among these distances:
866 2 0.00
870 3 0.00
871 1 0.00
872 3 0.00
876 4 0.00
877 200 0.11
878 165 0.09
879 184 0.10
881 2 0.00
882 183 0.10
883 3 0.00
884 1 0.00
886 9 0.01
887 3 0.00
888 1 0.00
889 2 0.00
890 3 0.00
891 422 0.24
892 48 0.03
893 158 0.09
894 1 0.00
895 3 0.00
897 1 0.00
898 1 0.00
899 1 0.00
902 1 0.00
903 1 0.00
904 188 0.11
905 4 0.00
906 1 0.00
907 3 0.00
908 182 0.10
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (887 bp):
TAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTAGCCGGC
GTAGGCCCGCCCGCCCGTCCGCCCGCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCAGACTGAGGGTGGCAGCAATAGGATCGACAGCACGTAGAGGGGGA
CCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTTGCCGCTGAGCGCCCGCACGCTCATTTCA
TGGGTTGACTTAGGGATACGGAGTTCATTCCCAGCTAAGCATACGAAGTTCATTCCCAGTCTAAG
ATCGAACCGAACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTT
TCTTTCCCAGGGCACCATCGCGGAGCATCATCGGAGAACTTGACCGGCGGCATTAGGGTTCCGAC
GATCGGGGGGGCCGAGGGCGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTA
TATTGGCCTCCTATAACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAATTT
Found at i:1550481 original size:877 final size:895
Alignment explanation
Indices: 1548885--1550855 Score: 2779
Period size: 879 Copynumber: 2.2 Consensus size: 895
1548875 TTGAAAATTG
* * *
1548885 TGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTAT
1 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
1548950 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
* * * ** *
1549015 CCACCCTATTGATCCACGGCTTGCACATCTCGTCTCTCAAGCCGGCGTAGCGCCCGCCCGCCCGT
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCG-CCGT
1549080 CCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
194 CCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * *
1549145 ACCAGACTGAGGGTGGCAGCAGTAGGATCGACAGCATGTAGAGGGGGACCCGATCGATCCCCGGC
259 ACCAGACTGAGGGTGGCAGCAATAGGATCGACAGCACGTAGAAGGGGACCCGATCGATCCCCGGC
* * * * * *
1549210 TTGCGCATCCTACCCCTCTTGCCAGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGGA
324 TTGCGCATCCGACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTGAGGCA
1549275 TACGGAGTTCATTCCCAGCCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGAACCGA
389 TACGGAGTTCATTCCCAG-CT-A-CATA--AAG-T-ATT-CCAG----AGATCGAA-CGAACCGA
* * **
1549340 GGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTTCCCAGGGCAC
441 GGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTTCCCAGGGCAC
* * * * ** *
1549405 CATCGCAGGAGCATCATCGGAGAACTTGACCGGCGGCATTAGGGTTCCGGTGATCGGGGGGGCCG
506 CATCGCAGGAGCATCACCAGAGAACCTAACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCCG
* *
1549470 AGGGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTAT
571 AGGGCGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
1549535 AACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGCTGC
636 AACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
1549600 CAGTAGTCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
701 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACT
*
1549665 TCGAGTTTTTAGCTGAATTT-TTTT-TGCATGCCAACAAAAATACAAGGTTCACGTCTACCAAGT
766 TCGAGTTTTTAGCTG-ATTTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
1549728 TTGGGGGCAAAACTCCTTTCG-AAAAAGTTTAAAAAATCCCGAACCGCAAAGAGTTTCAAAAATC
830 TTGGGGCCAAAACTCCTTTCGAAAAAAGTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
1549792 A
895 A
* * *
1549793 TGAAAAATAGAAAACGAGTCATCTTCCCATGAAACTTCACATGAAGGCTTAAGGGACCAATGTAT
1 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
1549858 GAATTTACAAGCCATAAAATTGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
* * *
1549923 CCACCCTATCGATCCACGACTTACGCATCCCGTCTCTCTGGCCAGCGTAGTGCCCGCCTG-C-T-
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCCGTC
*
1549985 CGCCCG-CTCGCTCGTTTCATCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGATCAG
195 CGCCCGTC-CGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * *
1550049 ACCAGACTGAGGGTGGCAGCAATAGGATCGGCCA-CACGTAGAAGGGGACCCGGTCGATCCTCGG
259 ACCAGACTGAGGGTGGCAGCAATAGGATC-GACAGCACGTAGAAGGGGACCCGATCGATCCCCGG
* * * * *
1550113 CTTGTGCATCCGGCCCTTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTGAGGC
323 CTTGCGCATCCGACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTGAGGC
* * *
1550178 ATACGGAGTTCATTCCCAG-T-C-T-AAG-A-T-C-G-GA-C-AA-G-GCTGAGGGTTACGGTAG
388 ATACGGAGTTCATTCCCAGCTACATAAAGTATTCCAGAGATCGAACGAACCGAGGGTTACGATAG
* * *
1550230 CACATGCTGGGCTCGGGCTTGTGCTGGTACCACATTTTTC-TTCATCGGGGCACCATCGTC-GGA
453 CACATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTTC-CCAGGGCACCATCG-CAGGA
1550293 GCATCACCAGAGAACCTAACCGGCGGCATT-GGTGTTCCGACGATCGAGGGGGCCCGA-GGC-GG
516 GCATCACCAGAGAACCTAACCGGCGGCATTAGG-GTTCCGACGATCG-GGGGGCCCGAGGGCGGG
* **
1550355 TGTGCGCAAATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
579 TGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATAACTCATC
*
1550420 AAACCTCGAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
644 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * *
1550485 ATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTTGATTTT
709 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTT
* *
1550550 TTAGCTGATTTGTTTTGTGCGTGCCAACAAAATTACAAGGATCACGTCTACCAAGTTTGGGGCCA
774 TTAGCTGATTTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * **
1550615 AAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATTG
839 AAACTCCTTTCGAAAAAAGTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
* * *
1550672 TGAAAAATAGAAAACGAGTCACCATGCCATGAAAATTCACGTGAAGGCTTAAGGGACCATTGTAT
1 TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* * * * *
1550737 GAATTTACAAGCCATAAAAATGGCATTAGCATGCAGAAATATGAAGATATGCCTAAACACACCTA
66 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
1550802 CCATCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCC
131 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTGCC
1550856 TACCCGCTCG
Statistics
Matches: 961, Mismatches: 92, Indels: 49
0.87 0.08 0.04
Matches are distributed among these distances:
876 4 0.00
877 200 0.21
878 161 0.17
879 215 0.22
881 2 0.00
882 1 0.00
883 2 0.00
888 1 0.00
889 1 0.00
891 1 0.00
892 1 0.00
895 3 0.00
898 1 0.00
899 1 0.00
902 1 0.00
903 1 0.00
904 188 0.20
905 4 0.00
906 1 0.00
908 172 0.18
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
TGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGCGTAGTGCCCGCCCGCCGTCC
GCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACTGAGGGTGGCAGCAATAGGATCGACAGCACGTAGAAGGGGACCCGATCGATCCCCGGCTT
GCGCATCCGACCCCTCTGGCCAGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTGAGGCATA
CGGAGTTCATTCCCAGCTACATAAAGTATTCCAGAGATCGAACGAACCGAGGGTTACGATAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTTCCCAGGGCACCATCGCAGGAGCATC
ACCAGAGAACCTAACCGGCGGCATTAGGGTTCCGACGATCGGGGGGCCCGAGGGCGGGTGTGCGC
AAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATAACTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGCACACTTCGAGTTTTTAGCTG
ATTTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
TTTCGAAAAAAGTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCA
Found at i:1552450 original size:26 final size:26
Alignment explanation
Indices: 1552414--1552464 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1552404 TGACTTAGGG
*
1552414 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
1552440 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
1552465 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:1554043 original size:158 final size:158
Alignment explanation
Indices: 1553731--1554084 Score: 388
Period size: 158 Copynumber: 2.2 Consensus size: 158
1553721 CGTTTCCTCA
* * * ** * * *
1553731 GTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATTGGATCGAACCGAGGGTTGCGGCAAT
1 GTTGACTTAGGCATAC-GAGTTCATTCCTAATCTAAGATCAGACCGAACCGAGGGTTGAGGCAAC
* * * *
1553796 AGGATCGACAGCACGCAAAGGGGGACCTGACCAATCCCCGACTCGCGCATCCTGCCCGTCTGGCC
65 AGGACCGACAGCACGCAAAGGGGGACCCGACCAATCCCCGACTCGCGCATCCTACCCCTCTGGCC
* *
1553861 GACTGAGCGCCAGCACCCTCGTTTCGTGG
130 GACTGAGCCCCAGCACCATCGTTTCGTGG
* * * *
1553890 GTTGACTTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGAGGCAGC
1 GTTGACTTAGGCATAC-GAGTTCATTCCTAATCTAAGATCAGACCGAACCGAGGGTTGAGGCAAC
* * * * * * * * *
1553955 AGTACCG-TAGTACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGTATCCTACCCCTCTGGCC
65 AGGACCGACAGCACGCAAAGGGGGACCCGACCAATCCCCGACTCGCGCATCCTACCCCTCTGGCC
* * *
1554019 GACTGAGCACCCA-CACGATTGTTTCGTTG
130 GACTGAGC-CCCAGCACCATCGTTTCGTGG
1554048 GTTGACTTAGGCATACGAAGTTCATTCCTAATCTAAG
1 GTTGACTTAGGCATACG-AGTTCATTCCTAATCTAAG
1554085 CATACGGAGT
Statistics
Matches: 161, Mismatches: 32, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.01
158 99 0.61
159 61 0.38
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (158 bp):
GTTGACTTAGGCATACGAGTTCATTCCTAATCTAAGATCAGACCGAACCGAGGGTTGAGGCAACA
GGACCGACAGCACGCAAAGGGGGACCCGACCAATCCCCGACTCGCGCATCCTACCCCTCTGGCCG
ACTGAGCCCCAGCACCATCGTTTCGTGG
Found at i:1554087 original size:26 final size:26
Alignment explanation
Indices: 1554058--1554110 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1554048 GTTGACTTAG
*
1554058 GCATACGAAGTTCATTCCTAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
1554084 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
1554110 G
1 G
1554111 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:1555909 original size:26 final size:26
Alignment explanation
Indices: 1555873--1555924 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1555863 GTTGACTTAG
*
1555873 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1555899 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1555925 TATCGGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1556818 original size:26 final size:26
Alignment explanation
Indices: 1556782--1556833 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1556772 GTTGACTTAG
*
1556782 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1556808 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1556834 TATCGGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1557723 original size:26 final size:26
Alignment explanation
Indices: 1557689--1557740 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1557679 GTTGACTTAG
*
1557689 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1557715 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1557741 TATCGGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1557976 original size:907 final size:907
Alignment explanation
Indices: 1553882--1559531 Score: 7300
Period size: 908 Copynumber: 6.3 Consensus size: 907
1553872 AGCACCCTCG
* * * * * * *
1553882 TTTCGTGGGTTGACTTAAGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTT
* * * * * * * * **
1553947 GAGGCAGCAGTA-CCGTAGTACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGTATCCTACCC
66 GTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * * * * * * *
1554011 CTCTGGCCGACTGAGCACCCACACGATTGTTTCGTTGGTTGACTTAGGCATACGAAGTTCATTCC
131 CTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * **
1554076 TAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTACGATAGCAC
196 TAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAC
* * * *** * * ** *
1554141 ATGCTAGGCTCGGGCATGTGCTAGTGCTGTATTTTTCTTCATCGAGGCACCATCG-CCAATGTAT
261 ATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTCACCGGGGCACCATCGTCGGA-GCAT
* * * * * * * *
1554205 CGCCGGAGAACTTGACTGGCGGTATTGGGGTTCCGGCGAT---------CGGGAGGTGTGCGCAC
325 CGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTGCAC
* * *
1554261 ATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTAATCAAACCTTGA
390 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
* ** *
1554326 GAACTCACACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTCACTGCCAGTAGCCATTAAAGTG
455 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTG
* * * * *
1554391 TTTGAAATGGGGACACTTTTTCCAAAATGGTCACAAAATCTTGTATACTTCCAGTTTTTAGTTGA
520 TCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * * *
1554456 ATGT-TGTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
584 AT-TATTTTTTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTCGGGGACAAAACTCC
* * *** *
1554520 TTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGGAAATCGTGAAAAATAGAAAAT
648 TTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
1554585 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
713 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * **
1554650 AAAAATGACATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCAATCGATCC
778 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCC
* * *
1554715 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT-GCCTGCCCGCCCGCCCGCCCGCCTGCCC
843 ACGGCTTGCGCATCCCGCCTCTCTGGCC--CGT-GTAG--TGCCCACCCGCCCGCCCGCCCGCCC
*
1554779 GCTCG
903 GCTCT
* * * *
1554784 TTCCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGT-TGAAGAAT-GGACC-AGACTAAGG
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT-AAG-ATCAGACCGA-ACTGAGG
* ** * * **
1554846 GTTGCGACAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCATATCCCG
63 GTTGTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG
* * * * * *
1554911 CCCCTCTAGCCGGTTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTCCAT
128 CCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * *
1554976 TACC-GGTCTAAGCATACGGAGTTCATTCCCAGTCGAAAATCAGACCAGACCGAGGGTTGCAGCA
193 T-CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCA
* * * * * * * *
1555040 GCAGATACTGGGCTCGGGCATGTGCTGGTGCCACACTTTTCTTCGCCAGGGCACCAGCGCCGGAG
257 GCACATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTCACCGGGGCACCATCGTCGGAG
** * * * **
1555105 CATCACCGTAGATCCTGACCGGTGGCATTGGGGTTTCGACGATCGAGGGGGTCGGGGGTGGGGTG
322 CATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCG-GGGGG--GCCGG-GGGGTG
*
1555170 TGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAA
383 TGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
1555235 ACCTCGAGAACTCCCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-T
448 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCAT
* *
1555299 GTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACACTTCGAGTTTT
513 -TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * * ** *
1555364 TAGCTG-ATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTTGGGCCA
577 TAGCTGAATTATTTTT-TGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTCGGGGACA
* *
1555428 AAACTTCTTTCCGAAAAAATCTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
641 AAAC-TCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
* *
1555493 TAGAAAACGGGTCGTCTTGCCAT-AACACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTT
705 TAGAAAACGAGTCGTCTTGCCATGAA-ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
1555557 ACAAGCCATAAAAATGGCATTGGCATGTAGAAATAT-AGAGATGTGCCTAAACCCACCTACCACC
769 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGA-AGATGTGCCTAAACCCACCTACCACC
* * * * *
1555621 TTATCGATTCACGGCTTGCGCATCCCGCCTCTCTTGCCCGTGTAGTGCCCGCCCGCTCGCTCGCC
833 TTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCCGTGTAGTGCCCACCCGCCCGCCCGCC
* *
1555686 CGCCTGTTCT
898 CGCCCGCTCT
* * * * *
1555696 TTTCGTCGGTTGGCTTATGCATACGGAGTTCATTGCCAGTCTAAGATCGGACCAAACTGATGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTT
* * * * *
1555761 GTTGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGATCAATCCCCGGCATGCGCATCCCGCCC
66 GTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
** * *
1555826 CTTTGGTTGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
131 CTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* *
1555891 TAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCGGACCGGACCGAGGGTTACGGCAGCAC
196 TAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAC
* * * ** *
1555956 ATGCTTGGCTCGAGCATGCGCTGGTACCGTATTTTTCTTCACCGGGGCACCATCATCGGAGCATC
261 ATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATC
* * * * *
1556021 GTTGGAGAACCTGTCCGATGGCATTGAGGATCCGACGATCGGGGGGGCCGGGGGGTGTGTGCACA
326 GTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTGCACA
*
1556086 TGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
391 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
1556151 AACTCACACGCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATGGCCATTAAAGTGT
456 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGT
*
1556216 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAAT
521 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
1556281 TAATTTTTTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTCGGGGACAAAACTCCTT
586 T-ATTTTTTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTCGGGGACAAAACTCCTT
* *
1556346 CCGAAAAAATTTTAAAAAATCTTGAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
650 CCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
1556411 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
715 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
1556476 AAATGGCATTGGCATGTAGAAATAT-AGAGATGTGCCTAAACCCACCTACCACCTTATCGATTCA
780 AAATGGCATTGGCACGCAGAAATATGA-AGATGTGCCTAAACCCACCTACCACCTTATCGATCCA
* * * * * *
1556540 CGGCTTGCGCATCCCGCCTCTCTTGCCCGTGTAGTGCCCGCCCGCTCGCTCGCCCGCCTGTTCT
844 CGGCTTGCGCATCCCGCCTCTCTGGCCCGTGTAGTGCCCACCCGCCCGCCCGCCCGCCCGCTCT
* * * * *
1556604 TTTCGTCGGTTGGCTTATGCATACGGAGTTCATTGCCAGTCTAAGATCGGACCAAACTGATGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTT
* * * * *
1556669 GTTGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGATCAATCCCCCGGCATGCGCATCCCGCC
66 GTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-CCCCGGCTTGCGCATCCCGCC
** * *
1556734 CCTTTGGTTGGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
130 CCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * *
1556799 CTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCGGACCGGACCGAGGGTTACGACAGCA
195 CTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCA
* * ** *
1556864 CATGCTTGGCTCGGGCATGCGCTGGTACCGTATTTTTCTTCACCGGGGCACCATCATCGGAGCAT
260 CATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCAT
* * * * * *
1556929 CGTTGGAGAACCTGTCCGATGGCATTGAGGATCCGATGATCGGGGGGGCCGGGGGGTGTGTGCAC
325 CGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTGCAC
*
1556994 ATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
390 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
** * *
1557059 GAACTCACATGCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATGGCCATTAAAGTG
455 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTG
*
1557124 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAA
520 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
1557189 TTAATTTTTTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTCGGGGACAAAACTCCT
585 TT-ATTTTTTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTCGGGGACAAAACTCCT
* * *
1557254 TCCGAAAAAATTTTAAAAAATCTTGAACCCTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAATG
649 TCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
1557318 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
714 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* * * * * *
1557383 AAAATGGCATTGGAACGCAGCAATATGGAGATATGCCTAAACCCACCTACCACCCTATCGATTCA
779 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCA
*
1557448 CGGCTTGCGCATCCCACCTCTCTGGCCCGTGTAGTGCCCACCCGCCCGCCCGCCCGCCCGCTCT
844 CGGCTTGCGCATCCCGCCTCTCTGGCCCGTGTAGTGCCCACCCGCCCGCCCGCCCGCCCGCTCT
* *
1557512 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACTGACGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTT
* *
1557577 GTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCAGCATGCGCATCCCGCCC
66 GTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * * *
1557642 CTTTGGCAGGCTGAGCGCCCGGACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
131 CTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * ** *
1557707 TAGTCTAAGCATGCGGAGTTCATTCCCAGTCTAATATCGGACCAGACCGAGGGTTGTGGTAGCAC
196 TAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAC
* * * *
1557772 ATGTTGGGCTCGGGCATTTGCTGGTACTACATTTTTCTTCACCAGGGCACCATCGTCGGAGCATC
261 ATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATC
** *
1557837 G-CGGAGAACCTTTCCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGTGGGTGTGCGCAC
326 GTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGTGTGTGCAC
1557901 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
390 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
** *
1557966 GAACTCACATGCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTG
455 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTG
* *
1558031 TCTGAAATGGGGACACTTTTTTCAAATGGTCCAAAAAATGTTGTACACTTCGAGTTTTTAGCTGA
520 TCTGAAATGGGGACACTTTTTTCAAATGGT-CACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* *
1558096 ATTAATTTTTTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTCGGGGGCGAAACTCC
584 ATT-ATTTTTTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTCGGGGACAAAACTCC
* * * * *
1558161 TTTCGAAAAAATTTTAAAAAATCCCGAGCCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAGC
648 TTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* *
1558226 GAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCAT
713 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
** * *
1558291 AAAAATGGCATTAGG-ACATAGAAATATGAAGATGTACTTAAACCCACCTACCACCTTATCGATC
778 AAAAATGGCATT-GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATC
* * * * * * *
1558355 CACGGGTTACGCATCCCGCCTCTTTAG-CCGACGTAGT----ACCCGTCCGCCCGCCCGCTCG--
842 CACGGCTTGCGCATCCCGCCTCTCTGGCCCG-TGTAGTGCCCACCCGCCCGCCCGCCCGCCCGCT
1558413 -T
906 CT
* * *
1558414 TTT-ATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGAACTGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTT
* * * * *
1558478 GCGGTAGAATGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCG-CC
66 GTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * * *
1558542 CTTCTGG-CGAGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAATTCTTT
131 CTT-TGGCCG-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * * * *
1558606 CCTAGTCTGAGCATACAGAGTTCGTTCCTAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGC
194 CCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGC
* * * * ***
1558671 ACATGCTGGGCTCAGGCATGTGCTAGTGCGACAGTTTTTCTTCGTTGGGGCACCA----C----C
259 ACATGCTGGGCTCGGGCATGTGCTGGTACCACA-TTTTTCTTCACCGGGGCACCATCGTCGGAGC
* *
1558728 A-C--CAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT---------C-GGGGGTGTGTGC
323 ATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTGC
* * *
1558780 ACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCAGCAAACCTT
388 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
1558845 GAGAACTCACA-CCCCTTAAAGAGCGTTTGAGATTTTATAGGTTTGTTGCCAGTAGCACCATTAA
453 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAG--CCATTAA
1558909 AGTGTCTGAAATGGGGACA-TTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAGC
516 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * * **
1558972 TGAATTTTTTTTGTGCATGCCAACAAAAATACAAGAATCACGTCTACCAAGTT-TGTTACCAAAA
581 TGAATTATTTTT-TGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTCGGGGA-CAAAA
* * * **
1559036 CTCCTTTCAAAAAAATTTTAAAAAATCTCGAACTGTAAAAAGTTTTGAAAATCGTGAAAAATAGA
644 CTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
*
1559101 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAG
709 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
1559166 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCG
774 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCG
** * * *
1559231 ATCCATAGCTTGCGCATCTCGCCTCTCTGGCCGGCGTAGTGCCCA--------CCCGCCCGCCCG
839 ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCCGTGTAGTGCCCACCCGCCCGCCCGCCCGCCCG
*
1559288 CTCG
904 CTCT
* * * *
1559292 TTTCATCGGTTAGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGACTGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTT
* * * * * * * * * *
1559357 GAGGTAGCAAGATCGACAGCACACAGAAGGGGTCCGGGCCGATCCCCGGCTTGTGCATCCCACCC
66 GTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
* * * * *
1559422 CTCTGACCGGCTGAGCGCTCGCACGCTGGTTTCGTGGGTTGATTTAGGCATACGGAGTTCATTCC
131 CTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* *
1559487 CAGTCTAAGCATACGGAGTTCATTCCC-GTCTAAGATCGAACCAGA
196 TAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGA
1559532 TCAAGCAGGA
Statistics
Matches: 4273, Mismatches: 415, Indels: 144
0.88 0.09 0.03
Matches are distributed among these distances:
875 11 0.00
878 27 0.01
879 455 0.11
880 48 0.01
881 96 0.02
882 28 0.01
883 2 0.00
892 33 0.01
893 1 0.00
894 2 0.00
898 1 0.00
900 6 0.00
901 244 0.06
902 80 0.02
903 228 0.05
904 4 0.00
905 19 0.00
906 44 0.01
907 366 0.09
908 990 0.23
909 794 0.19
910 7 0.00
911 9 0.00
912 321 0.08
913 5 0.00
914 9 0.00
915 90 0.02
916 353 0.08
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (907 bp):
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTT
GTGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC
CTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
TAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCAGCAC
ATGCTGGGCTCGGGCATGTGCTGGTACCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATC
GTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTGCACA
TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGT
CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
TATTTTTTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTCGGGGACAAAACTCCTTC
CGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACG
GCTTGCGCATCCCGCCTCTCTGGCCCGTGTAGTGCCCACCCGCCCGCCCGCCCGCCCGCTCT
Found at i:1559505 original size:26 final size:25
Alignment explanation
Indices: 1559469--1559520 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
1559459 GTTGATTTAG
1559469 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCC-GTCTAA
1559495 GCATACGGAGTTCATTCCCGTCTAA
1 GCATACGGAGTTCATTCCCGTCTAA
1559520 G
1 G
1559521 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCGTCTAA
Found at i:1559656 original size:173 final size:174
Alignment explanation
Indices: 1559362--1559698 Score: 480
Period size: 173 Copynumber: 1.9 Consensus size: 174
1559352 GGGTTGAGGT
* * * *
1559362 AGCAAGATCGACAGCACACAGAAGGGGTCCGGGCCGATCCCCGGCTTGTGCATCCCACCCCTCTG
1 AGCAAGATCGACAGCACACAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTG
* * * *
1559427 ACCGGCTGAGCGCTCGCACGCTGGTTTCGTGGGTTGATTTAGGCATACGGAGTTCATTCCCAGTC
66 ACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
1559492 TAAGCATACGGAGTTCATTC-CCGTCTAAGATCGAACCAGATCA
131 TAAGCATACGGAGTTCATTCTCAGTCTAAGATCGAACCAGATCA
* * ***
1559535 AGCAGGATCGACAGCACGCA-AAGGGGAACCCGACCGATCCCCGGCTTGCGCATCTTGCCCCTCT
1 AGCAAGATCGACAGCACACAGAAGGGG-ACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCT
* * * * *
1559599 GGCTGGTTTAGCACCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGT
65 GACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
1559664 CTAAGCATACGGAGTTCATTCTCAGTCTAAGATCG
130 CTAAGCATACGGAGTTCATTCTCAGTCTAAGATCG
1559699 GATCGGACCG
Statistics
Matches: 143, Mismatches: 19, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
172 6 0.04
173 125 0.87
174 12 0.08
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (174 bp):
AGCAAGATCGACAGCACACAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTG
ACCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAAGCATACGGAGTTCATTCTCAGTCTAAGATCGAACCAGATCA
Found at i:1559678 original size:26 final size:26
Alignment explanation
Indices: 1559642--1559694 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1559632 GTTGACTTAG
1559642 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1559668 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1559694 G
1 G
1559695 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1559789 original size:11 final size:11
Alignment explanation
Indices: 1559775--1559806 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
1559765 ATCGGGGCAC
1559775 CATCGTCGGAA
1 CATCGTCGGAA
*
1559786 CATCGCCGGAA
1 CATCGTCGGAA
1559797 CATCGTCGGA
1 CATCGTCGGA
1559807 GAACCTGACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.25, C:0.31, G:0.28, T:0.16
Consensus pattern (11 bp):
CATCGTCGGAA
Found at i:1560598 original size:26 final size:26
Alignment explanation
Indices: 1560556--1560608 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1560546 GTTGACTTAG
*
1560556 GCATACGGACTTTATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
*
1560582 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
1560608 G
1 G
1560609 ATTGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:1560910 original size:902 final size:904
Alignment explanation
Indices: 1559538--1561521 Score: 2790
Period size: 900 Copynumber: 2.2 Consensus size: 904
1559528 CAGATCAAGC
* * * *
1559538 AGGATC-GACAGCACGCAAAGGGGAACCCGACCGATCCCCGGCTTGCGCATCTTGCCCCTCTGGC
1 AGGATCGGA-AGCACGCAAAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGC
* * * * *
1559602 TGGTTTAGCACCCGCACGCTCGTTTCGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
65 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
1559667 AGCATACGGAGTTCATTCTCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGG
130 AGCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGCAGCAGCACATGCTGG
* * * * *
1559732 GCTTGGGCATGTGTTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAACATCGCCGGAA
195 GCTCGGGCATGTGCTAGTGCCACATTTTTCTTCAGCGGGG--CCA---TC---ACATCGCCGGAA
* * ** *
1559797 CATCGTCGGAGAACCTGACCAACGGCATTAGGGTTCTGGTGATTGGGGGGGCCGGGGGGTGTGCG
252 CATCGTCGGAGAACCTGACCAACGGCATTAGCGTTCCGACGATTGGGGGGGCCGCGGGGTGTGCG
** *
1559862 CAAATGATGTGCGGTGGGTGCTGCTGCTTGGCCTTTCTATTGGCCCCCTATCCCTCATCAAACCT
317 CAAATGATGTGCAATGGGTGCTGCTGCTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCT
*
1559927 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAA
382 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTACTAGTAGCCATTAAA
*
1559992 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGTT
447 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCT
* * *
1560057 GAATTTTTTTGTGCATGCCAAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
512 GAATATTTTTGTGCAT-CCAAACAAAAATACAAGGATCACATCAACCAAGTTTGGGG-CAAAACT
* * * *
1560121 CCTTCCGAGAAAATTTTAAAAAATCTTGAATCATAAAAAGTTTCAAAAA-TCGTTAAAAATAGAA
575 CCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAACT-GTGAAAAATAGAA
* * * * *
1560185 AATGAGTCGTCTTGTCATGAAACTTGACGTGAAGTCTTAAGGGACCATTTTATGAATTTACAAGT
639 AA-GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
1560250 GATAAAAATGGCATTGGCATGTAGAAATATAAAGATGTCCCTAAACCCACCTACCACCCTATCGA
703 CATAAAAATGGCATTGGCATGCAAAAATATAAAGATGTCCCTAAACCCACCTACCACCCTATCGA
* *
1560315 TCCACGACTTGCGCATCCCGTCTCCCTGGCCGACATAGTGCCTGCCC-GCCTGCCCACCCGCT-C
768 TCCACGACTTGCGCATCCCGTCTCCCTGGCCGACATAGTGCCCGCCCGGCC-GCCCACCCACTAC
* * * **
1560378 GATTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTGTAAGATTGGACCAGACCGAGGGT
832 -ATTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGT
*
1560443 TACGGCAAT
896 TACGACAAT
* * *
1560452 AGGATCGGAAGCACGCACAGGGGGACTCGGTCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCC
1 AGGATCGGAAGCACGCAAAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCC
* * * * *
1560517 AGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGACTTTATTCCCAGTCTAA
66 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1560582 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGCAGCAGCATATGTTGGG
131 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
*
1560647 CTCGGGCATGTGCTAGTGCCACATTTTTCTTC-GCAGGGG-CA-C-CATCGCCGGAACATTGTCG
196 CTCGGGCATGTGCTAGTGCCACATTTTTCTTCAGC-GGGGCCATCACATCGCCGGAACATCGTCG
* * *
1560708 GAGAACCTGACCGACGGCGTTTGCGTTCCGACGATTGGGGGGGTCC-CGGGG-GTGCGCAAATGA
260 GAGAACCTGACCAACGGCATTAGCGTTCCGACGATTGGGGGGG-CCGCGGGGTGTGCGCAAATGA
*
1560771 TGTGCAATGGGTGCTGGTGCTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
324 TGTGCAATGGGTGCTGCTGCTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
1560836 TCACACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTACTAGTAGCCATTAAAGTGTCTG
389 TCACACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTACTAGTAGCCATTAAAGTGTCTG
**
1560901 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATT
454 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATATT
* *
1560966 TTTGTGCATCCCAACAAAAATACAAGGATCACATCAACCAAGTTTGGGGCAAAACTCCTTCTGAA
519 TTTGTGCATCCAAACAAAAATACAAGGATCACATCAACCAAGTTTGGGGCAAAACTCCTTCCGAA
*
1561031 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAACTGTGAAAAATAGAAAAGAGTCGTC
584 AAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAACTGTGAAAAATAGAAAAGAGTCGTC
1561096 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
649 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
1561161 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
714 CATTGGCATGCAAAAATATAAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * * * * *
1561226 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGGCCGCCCGCCTACTACTTTCGTCGATTG
779 CGCATCCCGTCTCCCTGGCCGACATAGTGCCCGCCCGGCCGCCCACCCACTACATTCGTCGATTG
* * * *
1561291 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGTTTACGATAGT
844 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAAT
* * * * * * *
1561352 AGGATCGGCACCACGTAGA-GGGGACCCGATCGATGCTCGGCTTACGCATCCCGCCCCTCTGGCC
1 AGGATCGGAAGCACGCAAAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCC
** * * **
1561416 GGCTGAATGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCATAGTC-AA
66 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
1561480 GCATACGGAGTTCATTCCTGGTCTAAGA-TCAGACCAGACCGA
131 GCATACGGAGTTCATTCCCAGTCTAAGATTGA-ACCAGACCGA
1561522 CCAGGATCGA
Statistics
Matches: 953, Mismatches: 109, Indels: 32
0.87 0.10 0.03
Matches are distributed among these distances:
897 2 0.00
898 38 0.04
899 91 0.10
900 244 0.26
901 74 0.08
902 239 0.25
903 58 0.06
904 2 0.00
907 1 0.00
911 2 0.00
913 1 0.00
914 199 0.21
915 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (904 bp):
AGGATCGGAAGCACGCAAAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCC
GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCAGACCGAGGGTTGCAGCAGCACATGCTGGG
CTCGGGCATGTGCTAGTGCCACATTTTTCTTCAGCGGGGCCATCACATCGCCGGAACATCGTCGG
AGAACCTGACCAACGGCATTAGCGTTCCGACGATTGGGGGGGCCGCGGGGTGTGCGCAAATGATG
TGCAATGGGTGCTGCTGCTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTACTAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATATTTT
TGTGCATCCAAACAAAAATACAAGGATCACATCAACCAAGTTTGGGGCAAAACTCCTTCCGAAAA
AATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAACTGTGAAAAATAGAAAAGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAAAAATATAAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
CATCCCGTCTCCCTGGCCGACATAGTGCCCGCCCGGCCGCCCACCCACTACATTCGTCGATTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAAT
Found at i:1561665 original size:26 final size:26
Alignment explanation
Indices: 1561628--1561678 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1561618 GTTGACTTAG
1561628 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1561654 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
1561679 TGATCGGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1564296 original size:159 final size:161
Alignment explanation
Indices: 1564001--1564298 Score: 404
Period size: 159 Copynumber: 1.9 Consensus size: 161
1563991 CCCACCTACC
* * ** * * *
1564001 ACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCTC
1 ACCCGATCGATCCACGGCTTACGCATCCTACCCCTCTGGCCGACATAGAG-CCGCCCGCACGCTC
* * *
1564066 GTTTTGTCGGTTGGCTTAGGCATACGAGTTCATTCCAAGTCTAAGATTAGACCAGACCAAGGGTT
65 GTTTTATCGGTTGACTTAGGCATACGAGTTCATTCCAAGTCTAAGATCAGACCAGACCAAGGGTT
*
1564131 GTGGCAGCAGGATCGACATCACGCAGAGGGGG
130 GCGGCAGCAGGATCGACATCACGCAGAGGGGG
* * *
1564163 ACCCGATCGATCCTCGGCTTACGCATCCTACCCCTCTGGCCGAC-T-GAG-CGCTCGCACGCTTG
1 ACCCGATCGATCCACGGCTTACGCATCCTACCCCTCTGGCCGACATAGAGCCGCCCGCACGCTCG
* * *
1564225 TTTTATGGGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
66 TTTTATCGGTTGACTTAGGCATAC-GAGTTCATTCCAAGTCTAAGATCAGACCAGACCAAGGGTT
1564290 GCGGCAGCA
130 GCGGCAGCA
1564299 CATGCTGCGC
Statistics
Matches: 118, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
158 32 0.27
159 45 0.38
160 2 0.02
161 1 0.01
162 38 0.32
ACGTcount: A:0.20, C:0.30, G:0.27, T:0.23
Consensus pattern (161 bp):
ACCCGATCGATCCACGGCTTACGCATCCTACCCCTCTGGCCGACATAGAGCCGCCCGCACGCTCG
TTTTATCGGTTGACTTAGGCATACGAGTTCATTCCAAGTCTAAGATCAGACCAGACCAAGGGTTG
CGGCAGCAGGATCGACATCACGCAGAGGGGG
Found at i:1564352 original size:870 final size:866
Alignment explanation
Indices: 1562601--1564933 Score: 3433
Period size: 867 Copynumber: 2.7 Consensus size: 866
1562591 GGTTCCAGCA
* * *
1562601 GCACCATCACCAGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGG
1 GCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* *
1562666 TCGGGGGGGTGTGCGCACATGATGTGCAATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
66 TCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
1562731 TCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
131 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
1562796 CCAGTAGCCATTAAAGTGTCTGAAATGGGCACACTTTTTTTCAAATGGTCACAAAATCTTGTACA
196 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACA
* *
1562861 CTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACAAAG
260 CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
** * * * * *
1562926 TTTGGGGCCAAAAATCCTTCTGAAAAAGTTTT-AAAAATCCCGAACCGCAAAAAGTTTTGAAAGT
325 TTTGGGGCCAAACGT-ATTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAG-TTTCAAAAT
**
1562990 CGTGAAAAAT-AAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
388 CGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
1563054 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
453 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * ** *
1563119 TACCACCCTATCGATCCCCAGCTTGCGCAT-CTCGCCTCTCTAACCGGCGTAGTGCCCGCCCGCC
518 TACCACCCTATCGATCCACGGCTTGCGCATCCT-GTCTCTCTGGCCGACGTAGT----GCCCGCC
* * *
1563183 CGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTGTCTAAGATTGGAT
578 CG--C-CC-GCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCAGTCTAAGATTAGAC
* * * *
1563248 AGGACCGAGGGTTGCGGTAGCAGGATCAGTAGCACGCAGAGGGGGACCCGACCGATCCCCGGGTT
639 AGGACCAAGGGTTGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * * * *
1563313 GCGCATCCCATCGCTCTGGCCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATA
704 ACGCATCCCACCCCTCTGGCCGACTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATA
* * ** * * *
1563378 CGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGCTGTGCTCGG
769 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGCGCTCAG
* *
1563443 GCATGTGCTGGTGCCGTATTTTTCTTCGTCGGG
834 GCATGTGCTGGTGCCGCATTTTTCTTCGCCGGG
* * **
1563476 GCACCATCATCGGAGCATCGCCGGGGAACCTGACCGGTAGCATTGGGGTTCCGGCGATCGGGGGG
1 GCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* **
1563541 TCCGGGGGGGGTGTGCTCACATGATGTGCGATGGGTGCTGGTACTTCACCCTTATATTGGCCCCC
66 T-C-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
1563606 TATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
129 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
1563671 TGCCAGTAGCCATTTAAGTGT-TAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
194 TGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* *
1563735 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATGCAAGGATCACGTCTACCA
258 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
*
1563800 AGTTTGGGGCCGAAACGTTTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
323 AGTTTGGGGCC-AAACGTATTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
*
1563865 TTCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTT
387 -TCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
**
1563930 GTATGAATTTACAAGCCATAAAAATCACATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
451 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCA
*
1563995 CCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACATAGTGCCCGCCCGC
516 CCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
**
1564060 CCGCTCGTTTTGTCGGTTGGCTTAGGCATAC-GAGTTCATTCCAAGTCTAAGATTAGACCA-GAC
581 CCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCC-AGTCTAAGATTAGA-CAGGAC
* * * *
1564123 CAAGGGTTGTGGCAGCAGGATC-GACATCACGCAGAGGGGGACCCGATCGATCCTCGGCTTACGC
644 CAAGGGTTGCGGCAGCAGGATCAG-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGC
* * * ** * *
1564187 ATCCTACCCCTCTGGCCGACTGAGCGCTCGCACGCTTGTTTTATGGGTTGACTTAGGCATACTGA
708 ATCCCACCCCTCTGGCCGACTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGA
1564252 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGCGCTCAGGCAT
773 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGCGCTCAGGCAT
*
1564317 GTGTTGGTGCCGCATTTTTCTTCGCCGGG
838 GTGCTGGTGCCGCATTTTTCTTCGCCGGG
** * * * * *
1564346 GCACCATTGCCGGAGCATCGCCGGAGAACCTAACTGACGGCATTGGGGTTCTGACGATCGGGGGG
1 GCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
* * ** *
1564411 -CTGGGTGGGTGTGCGCACATGACGTATGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
66 TC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
1564475 ATCCCTCATCAAACCTCGAGAATTCACA-CCCCTTAAAGAGCATTTTAGATTTTATAGGTTTGCT
130 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
1564539 GCCAGTAGACATTAAAGTGTCTGAAATGGGGACACGTTTTTCAAACGGTCACAAAATCTTGTACA
195 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
1564604 CTTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
260 CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
1564669 TTTGGGGCCAAAACGCATTCTGAACAAATTTAAAAAAATCCCGAACCGTAAAAAGGTTTGAAAAT
325 TTTGGGGCC-AAACGTATTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA-GTTTCAAAAT
* *
1564734 CGTGATAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
388 CGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
1564799 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
453 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
1564864 TACCACCCTATCGATACATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCT
518 TACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
1564929 GCTCG
583 GCTCG
1564934 CCCACCCGCC
Statistics
Matches: 1321, Mismatches: 124, Indels: 34
0.89 0.08 0.02
Matches are distributed among these distances:
867 393 0.30
868 90 0.07
869 12 0.01
870 287 0.22
871 3 0.00
872 1 0.00
874 9 0.01
875 59 0.04
876 122 0.09
877 187 0.14
878 156 0.12
879 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (866 bp):
GCACCATCACCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG
TCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
TTGGGGCCAAACGTATTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAATCGT
GAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCT
CGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCAGTCTAAGATTAGACAGGACCAAGGGT
TGCGGCAGCAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCACC
CCTCTGGCCGACTGAGCGCCCACACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGCGCTCAGGCATGTGCTGGT
GCCGCATTTTTCTTCGCCGGG
Found at i:1565629 original size:726 final size:720
Alignment explanation
Indices: 1564232--1565744 Score: 2323
Period size: 726 Copynumber: 2.1 Consensus size: 720
1564222 TTGTTTTATG
* * * *
1564232 GGTTGACTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAG
* * * * * *
1564297 CACATGCTGCGCTCAGGCATGTGTTGGTGCCGCATTTTTCTTCGCCGGGGCACCATTGCCGGAGC
66 CACATGCTGCGCTCAGGCACGTGATGGTGCCGCATTTTTCTTCACCGGGGCAACATCGCCAGAGC
* * *
1564362 ATCGCCGGAGAACCTAACTGACGGCATTGGGGTTCTGACGATCGGGGGGCTGGGTGGGTGTGCGC
131 ATCACCGGAGAACCTAACTGACGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGTGTGCGC
*
1564427 ACATGACGTATGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
196 ACATGACGTACGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
1564492 GAGAATTCACACCCCTTAAAGAGCATTTTAGATTTTATAGGTTTGCTGCCAGTAGACATTAAAGT
261 GAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGACACTAAAGT
* *
1564557 GTCTGAAATGGGGACACGTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
326 GTCTGAAATGGGGACACGTTTTTCAAACGGTCACAAAATCTTCTACACTCCGAGTTTTTAGCTGA
*
1564622 AGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCAT
391 AGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCAT
* * * * * *
1564687 TCTGAACAAATTTAAAAAAATCCCGAACCGTAAAAAGGTTTGAAAATCGTGATAAATAGAAAACG
456 TCTGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGGTTTAAAAATCGTAAAAAATAGAAAACA
*
1564752 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
521 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATA
1564817 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACA
586 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACA
* * * * * *
1564882 TGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCTGCCTGCTCGCCCACCCGCCCGC
651 CGACTTGCGCATCCCGTCTCTCTGGCCGACATAATGCCCACCTGCC-GCACG----CCCGCCCGC
1564947 TCGTTTCGTC
711 TCGTTTCGTC
** * *
1564957 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATTGAGGGTTACGGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAG
* ** * *
1565022 CACATGCTGGGCTTGGGCACGTGATGGTGCCGCATTTTTCTTCATCGGGGCAACATCGCTAGAGC
66 CACATGCTGCGCTCAGGCACGTGATGGTGCCGCATTTTTCTTCACCGGGGCAACATCGCCAGAGC
* * *
1565087 ATCATCGGAGAACCTGA-TCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGGTGTGC
131 ATCACCGGAGAACCTAACT-GACGGCATTGGGGTTCTGACGATC-GGGGGGCCGGGGGGGTGTGC
* * *
1565151 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
194 GCACATGACGTACGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
1565216 TCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCGCTAA
259 TCGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGACACTAA
* * * *
1565281 AGTGTTTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTCTACACTCCGAGTTTTTAGC
323 AGTGTCTGAAATGGGGACACGTTTTTCAAACGGTCACAAAATCTTCTACACTCCGAGTTTTTAGC
* *
1565346 TGTATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
388 TGAAGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-
* * * *
1565411 CCTTTC-GAAAAAATTTTAAAAAAT-CCGAACCGCAAAAA-GTTTCAAAAATTGTAAAAAATATA
452 CCATTCTGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGGTTT-AAAAATCGTAAAAAATAGA
* *
1565473 AAATAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAG
516 AAACAAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAG
1565538 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
581 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
*
1565603 ATACACGACTTGCGCATCCCGTCTCTCTGGCCGGCATAATGCCCACCTGCCGCACGCCCGCCCGC
646 ATACACGACTTGCGCATCCCGTCTCTCTGGCCGACATAATGCCCACCTGCCGCACGCCCGCCCGC
1565668 TCGTTTCGTC
711 TCGTTTCGTC
* *
1565678 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAG
1565743 CA
66 CA
1565745 GGATTGACAG
Statistics
Matches: 714, Mismatches: 69, Indels: 14
0.90 0.09 0.02
Matches are distributed among these distances:
721 80 0.11
724 1 0.00
725 156 0.22
726 293 0.41
727 180 0.25
728 4 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (720 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAG
CACATGCTGCGCTCAGGCACGTGATGGTGCCGCATTTTTCTTCACCGGGGCAACATCGCCAGAGC
ATCACCGGAGAACCTAACTGACGGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGGTGTGCGC
ACATGACGTACGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGACACTAAAGT
GTCTGAAATGGGGACACGTTTTTCAAACGGTCACAAAATCTTCTACACTCCGAGTTTTTAGCTGA
AGTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCAT
TCTGAAAAAATTTAAAAAAATCCCGAACCGCAAAAAGGTTTAAAAATCGTAAAAAATAGAAAACA
AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATA
AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACA
CGACTTGCGCATCCCGTCTCTCTGGCCGACATAATGCCCACCTGCCGCACGCCCGCCCGCTCGTT
TCGTC
Found at i:1569904 original size:26 final size:26
Alignment explanation
Indices: 1569875--1569924 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
1569865 GTTTACCTAG
1569875 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1569901 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
1569925 CAGATCAGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1571477 original size:898 final size:901
Alignment explanation
Indices: 1569767--1571715 Score: 2854
Period size: 898 Copynumber: 2.2 Consensus size: 901
1569757 AAGGTTGCGA
* * * * *
1569767 CAGCAGGATCGATAGCACATGGAGGGGGACCCGACCGATTCTCGACTTGCGCATCCAGCCCCTCT
1 CAGCAGGATCGATAGCACATAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCAGCCCCTCT
* * *
1569832 GGTTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTTACCTAGGCATACGGAGTTCATTCCCAGT
66 GGTCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * *
1569897 CTAAGCATACGGAGTTCATTCCCAGTCTCAGATCAGACCAGATCAAGGGTTACGACAGCACATGT
131 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGATTACGACAGCACATGC
* * *
1569962 TGGGCTTGGGCATGTGTTGGTGCCACATTTTCTTCGCCGGGGCACCATCGCTAGAGCATCATCGG
196 TGGGCTCGAGCATGTGTTGGTGCCACATTTTCTTCGCCGGGGCACCATCGCTAGAGCATCACCGG
1570027 AGAACATGACCGGCGGCATTGGGGTTCTGACGATCAGGGGGGCCGGGGGGTGGTGGACGCACATG
261 AGAACATGACCGGCGGCATTGGGGTTCTGACGATCAGGGGGGCCGGGGGGTGGTGGACGCACATG
*
1570092 ATGTGCGATGGGTGCTGCTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
326 ATGTGCGATGGGTGCTGCTACCTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
* * * *
1570157 CTCACACCCCGTTAAAGAGCATTTGAGGTTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
391 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCT
*
1570222 GAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATT
456 GAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
1570287 TTTTTGTGCATGCCAATAAAAATACAAGGATCACATCCACCAAGTTTGGGGCCAAAAATCCTTTC
521 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCCACCAAGTTTGGGGCCAAAAATCCTTCC
* * **
1570352 GAAAAAATTTTAAAAAATCCTGAGGCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGT
586 GAAAAAAATTTAAAAAATCCTGAGCCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGT
* *
1570417 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
651 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAA
* * * *
1570482 GTGGCATTGGCACATAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTAAAAATCCACGG
716 ATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTAAAAATCCACGG
* * *
1570547 CTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCCTGCCCGCCCGCTTGTTTCACCGGTTG
781 CTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACTCGTTTCACCGGTTG
* **
1570612 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTTGATA-GAGGGTTACAG
846 ACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGA-CCGA-ACGAGGGTTACAG
* * * * * * * *
1570669 TAGCAGGATTGGTAGCACAAAGAGGGGGACCTGGCCGATCCCCGGCTTGTGCATCCTGCCCTTCT
1 CAGCAGGATCGATAGCACATAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCAGCCCCTCT
* * * * * *
1570734 GGTCGGTTGAGCACCCGTACGCTCGTTTCGTTGGTTGACTTAGACATGCAGAGTTCATTCCTAGT
66 GGTCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * **
1570799 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGATTGCGGTAGCACATGC
131 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGATTACGACAGCACATGC
** * * * *
1570864 TGGGCTCGAGCATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATTG-TCGGAGCATCGCC
196 TGGGCTCGAGCATGTGTTGGTGCCACA-TTTTCTTCGCCGGGGCACCATCGCT-AGAGCATCACC
* *
1570928 GGAGAACCTGACCGGCGGCATTGGGGTT-TCGACGATC-GGGGGGCCGGGGGGT-GT-G-TGCAC
259 GGAGAACATGACCGGCGGCATTGGGGTTCT-GACGATCAGGGGGGCCGGGGGGTGGTGGACGCAC
* * * *
1570988 ATGATGTGCGATGGGTGCTGGTACTTGACCCTTATATTGTCCCCCTATCCCTCTTCAAACCTTGA
323 ATGATGTGCGATGGGTGCTGCTACCTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
*
1571053 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTA
388 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTA
*
1571118 TCT-AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGA
453 TCTGAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * *
1571182 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
518 ATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCCACCAAGTTTGGGGCCAAAAATCCT
* *
1571247 TCCGAAAAAAATTTCAAAAATCCT-ATGCCACAAAAAGTTTCAAAAATCTTGAAAAATAGAAAAC
583 TCCGAAAAAAATTTAAAAAATCCTGA-GCCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* *
1571311 AAGTCATCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACTACTGTATGAATTTACAAGCCAT
647 AAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCAT
* ** * * ***
1571376 AAAAATGGCATTTGCAGGCAGAAATATAAAGATGTGCCTAAACCCACCTATCGCCCTATCGATCC
712 AAAAATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTAAAAATCC
* *
1571441 ACGGCTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCCGCCCACTCGTTTCATCG
777 ACGGCTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACTCGTTTCACCG
* ** *
1571506 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGAACTGAGGGTTACGG
842 GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAAC-GAGGGTTACAG
* * *
1571567 CAGCAGGATCGATAGCACGTAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCAGCCCCTCT
1 CAGCAGGATCGATAGCACATAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCAGCCCCTCT
* * ** *
1571632 GGTCAGCTGAGCACTCGCGCGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
66 GGTCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
1571697 CTAAGCATACGGAGTTCAT
131 CTAAGCATACGGAGTTCAT
1571716 ATCTCCGTAT
Statistics
Matches: 925, Mismatches: 116, Indels: 16
0.88 0.11 0.02
Matches are distributed among these distances:
896 1 0.00
897 3 0.00
898 525 0.57
899 127 0.14
900 1 0.00
901 2 0.00
902 203 0.22
903 63 0.07
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CAGCAGGATCGATAGCACATAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCAGCCCCTCT
GGTCGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGATTACGACAGCACATGC
TGGGCTCGAGCATGTGTTGGTGCCACATTTTCTTCGCCGGGGCACCATCGCTAGAGCATCACCGG
AGAACATGACCGGCGGCATTGGGGTTCTGACGATCAGGGGGGCCGGGGGGTGGTGGACGCACATG
ATGTGCGATGGGTGCTGCTACCTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCT
GAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCCACCAAGTTTGGGGCCAAAAATCCTTCC
GAAAAAAATTTAAAAAATCCTGAGCCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGT
CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCACACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTAAAAATCCACGG
CTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCACTCGTTTCACCGGTTG
ACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAACGAGGGTTACAG
Found at i:1572037 original size:339 final size:337
Alignment explanation
Indices: 1571419--1572040 Score: 863
Period size: 339 Copynumber: 1.8 Consensus size: 337
1571409 GTGCCTAAAC
* * * * * * *
1571419 CCACCTATCGCCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCC
1 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGACAGCGTAGTGCCCGCC
*
1571484 CGTCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGA
66 CGTCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGA
* * ** * * ** *
1571549 CCGAACTGAGGGTTACGGCAGCAGGATCGATAGCACGTAGAGGGGGACCCGGTCGATCCCTGGCT
131 CCGAACCGAAGGTTACCACAGCAGGATCGACAGCACGCAGAGGGGGACCCAATCGATCCCCGGCT
* * **
1571614 TGCGCATCCAGCCCCTCTGGTCAGCTGAGCACTCGCGCGCTCGTTTCATGGGTTGACTTAGGCAT
196 TGCGCATCCAGCCCCTCTGGTCAGCTGAGCACCCGCACGCTAATTTCATGGGTTGACTTAGGCAT
1571679 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATATCTCCGTATCGATCCACGGCTTGCGCA
261 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATATCTCCGTATCGATCCACGGCTTGCGCA
1571744 TCCCGTCTCCTA
326 TCCCGTCTCCTA
*
1571756 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC-CTAGACAGCGTAGTGCTCGCC
1 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGACAGCGTAGTGCCCGCC
* *
1571820 CGTCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGA
66 CGT----CCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGA
* * * * * * *
1571884 TCGGACTGGACCGAAGGTTGCCATAGTAGGATCGGCAGCACGCAGA-GGGGACCCAATTGATCCC
126 TCGGACCGAACCGAAGGTTACCACAGCAGGATCGACAGCACGCAGAGGGGGACCCAATCGATCCC
* * * *
1571948 CGGCTTGCGCATCCCGCCCCTCTGGTCGGTTGAGCACCCGCATGCTAATTTCATGGGTTGACTTA
191 CGGCTTGCGCATCCAGCCCCTCTGGTCAGCTGAGCACCCGCACGCTAATTTCATGGGTTGACTTA
1572013 GGCATACGGAGTTCATTCCCAGTCTAAG
256 GGCATACGGAGTTCATTCCCAGTCTAAG
1572041 ATCGGATCGG
Statistics
Matches: 245, Mismatches: 35, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
336 19 0.08
337 40 0.16
339 100 0.41
340 86 0.35
ACGTcount: A:0.18, C:0.32, G:0.26, T:0.24
Consensus pattern (337 bp):
CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGACAGCGTAGTGCCCGCC
CGTCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGA
CCGAACCGAAGGTTACCACAGCAGGATCGACAGCACGCAGAGGGGGACCCAATCGATCCCCGGCT
TGCGCATCCAGCCCCTCTGGTCAGCTGAGCACCCGCACGCTAATTTCATGGGTTGACTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATATCTCCGTATCGATCCACGGCTTGCGCA
TCCCGTCTCCTA
Found at i:1572168 original size:159 final size:158
Alignment explanation
Indices: 1571826--1572199 Score: 502
Period size: 159 Copynumber: 2.4 Consensus size: 158
1571816 CGCCCGTCCG
* * * * *
1571826 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACT
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
* * *
1571891 GGACCGAAGGTTGCCATAGTAGGATCGGCAGCACGCAGAGGGGACCCAATTGATCCCCGGCTTGC
66 GGACCGAAGGTTGCCATAGCAGGATCAGCAGCACGCAGAGGGGACCCAATCGATCCCCGGCTTGC
**
1571956 GCATCCCGCCCCTCTGGTCGGTTGAGCA
131 GCATCCCGCCCCTCTGGTCGACTGAGCA
* **
1571984 CCCGCATGCTAATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-T
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
* * * *
1572048 CGGATCGAGGGTTG-CA-ACGACAGGATCAGTAGCACGCAGAGGGGGACCCAATCGATCCCCGGG
66 -GGACCGAAGGTTGCCATA-G-CAGGATCAGCAGCACGCAGA-GGGGACCCAATCGATCCCCGGC
* *
1572111 TTGCGCATCCCGCCCTTTTGGTCGACTGAGCA
127 TTGCGCATCCCGCCCCTCTGGTCGACTGAGCA
* *
1572143 CCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGTGTTCATTCCCAGTCTAAG
1 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1572200 CGTACGGAGT
Statistics
Matches: 188, Mismatches: 24, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
156 1 0.01
157 4 0.02
158 83 0.44
159 100 0.53
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (158 bp):
CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
GGACCGAAGGTTGCCATAGCAGGATCAGCAGCACGCAGAGGGGACCCAATCGATCCCCGGCTTGC
GCATCCCGCCCCTCTGGTCGACTGAGCA
Found at i:1572212 original size:26 final size:26
Alignment explanation
Indices: 1572176--1572225 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1572166 GACTTAGGCA
*
1572176 TACGGTGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
1572202 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
1572226 ATCGAACTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:1573451 original size:26 final size:26
Alignment explanation
Indices: 1573414--1573466 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1573404 GTTGACTTAG
1573414 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1573440 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1573466 G
1 G
1573467 ATCGGACGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1573761 original size:171 final size:171
Alignment explanation
Indices: 1573440--1573774 Score: 442
Period size: 171 Copynumber: 2.0 Consensus size: 171
1573430 CCCAGTCTAA
* *
1573440 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACGAAACCGACGGTTACGACAGCACAAGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACGAAACCGACGGTTACGACAGCACAAGCTGGG
* * * *
1573505 CTCGGGCATGTGTTGGTGCCACATTTTTCTTTATCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCACGTGTTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCAGAGA
* ** *
1573570 ACCTGATCGGTGGCATTGGGGTTCCGACGATCGGGGGGTGT
131 ACCTAATCGACGGAATTGGGGTTCCGACGATCGGGGGGTGT
* * * ** *
1573611 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCG-GACCGAGGGTTGCGGTAGCAC-ATCTTG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGA-CGAAACCGACGGTTACGACAGCACAAGC-TG
** *
1573674 GGCTCGGGCACGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCAGA
64 GGCTCGGGCACGTGTTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCAGA
*
1573739 GAACCTAA-CTGACGGAATTGGGGTTTCGACGATCGG
129 GAACCTAATC-GACGGAATTGGGGTTCCGACGATCGG
1573775 ATCAAACCAG
Statistics
Matches: 141, Mismatches: 20, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
170 3 0.02
171 136 0.96
172 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (171 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACGAAACCGACGGTTACGACAGCACAAGCTGGG
CTCGGGCACGTGTTGGTGCCACATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGCCAGAGA
ACCTAATCGACGGAATTGGGGTTCCGACGATCGGGGGGTGT
Found at i:1576848 original size:26 final size:26
Alignment explanation
Indices: 1576812--1576864 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1576802 GTTGACTTAG
1576812 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1576838 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1576864 G
1 G
1576865 ATCAGAATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1579312 original size:907 final size:902
Alignment explanation
Indices: 1576414--1584312 Score: 6046
Period size: 904 Copynumber: 8.5 Consensus size: 902
1576404 GCATGCCAAC
* *
1576414 AAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACCTCACGTGAAGGCT
1 AAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
1576479 TAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGGATTGGCATGCAGAAATATGAAGATG
66 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * *
1576544 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATTCCGTCTCTCTGATCGACATA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA
* * *
1576609 GTGCCCGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTA
196 GTGCCCGCTCG-CCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
** * * * ** *
1576674 GTCTAAGATCGGACCAGACCGAGGGTCACGGTAGTAGGATCGGTAGCACAAAGAGGGGGACCCGA
260 GTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCGG
* * * ** *
1576739 TCGATCCCAG-CTTGCGCATCCCGCCCCTCTGGCCAGCT-AAGCGCTTGCACGCTTGTTTCGTGG
325 CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAA-CGCCCGCACGCTCGTTTCGTGG
*
1576802 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGAT
389 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
** * * * *
1576867 CAGAATAGATCAAGGCTTGCAGCAGCACATGCTGGG-TGCGAGCATGTGCTGGTGCCGCATTTTT
454 CAGACCAGAACGAGGGTTGCGGCAGCACATGCTGGGCT-CGAGCATGTGCTGGTGCCGCATTTTT
* * * * * * *
1576931 CTTCGCCGGGGCACCATGGTCGGAGCATCATCAGAGAACTTGATCAGCGGCATTGGGGTTCCGGC
518 CTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGC
*
1576996 GATCGGGGGGCC-GGGGGGTGTGTGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATAT
583 GATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATAT
*
1577060 TGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
648 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* *
1577125 AGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAATTTTTTCAAATGGTCACAAAA
713 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
1577190 TCTTGTACACTTCAAGTTTTTAGCTGAATTTTCTTGTGCATGCCAAAAAAAATACAAGGATCACG
778 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACG
* * * ** *
1577255 TCTACC-AGTTTAGGACCGAAACTCCTTCTGAAAAAATTTTAAAAAAT-TCCAAACCGTAA
843 TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCT-CGAACCGTAA
*
1577314 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
1 AAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
1577379 TAAGGGAGCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
66 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * *
1577444 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCGTCCCATCTCTCTGGTCGACGTA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA
* * *
1577509 GTGCCCACCCGCTTGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
196 GTG----CCCGCTCG-CCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * *
1577574 -CCAATCTAAGATCAGA-CAGGACCGTGGTTTGCAGTAGCAGGATTGGCAGCAAGCAGAGGGGGA
256 CCCAGTCTAAGATCGGACCA-GACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGA
* * * * ***
1577637 CCCGACCGATCCCCGGCTTGCGCATCCCGCACCTCTGGCCGACTGAACGCCTAAACGCTCGTTTC
320 CCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTC
* * *
1577702 GTGGGCTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTT
385 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
1577767 AGATCGGACCGGACCGAGGGTTACGGTAGCACATGCTGGTCTCGAGCATGTGCTGGTGCCGCATT
450 AGATCAGACCAGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATT
* * * **
1577832 TTTCTTCGTCGGGGCACCATCATCGAAGCATCACCGGAGAACCTGACTTGCGGCATTGGGGTTCC
515 TTTCTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCC
* *
1577897 -GACAATCGGAGGGGCC-GGGGGGTGTGCGCACATGATGTGTGATGGGTGCTAGTACTTGGCCCT
580 AG-CGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCT
1577960 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAACG-GCATTTGAGA
643 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA-GAGCATTTGAGA
* *
1578023 TTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCTAATGGTC
707 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * *
1578088 ACAAAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAATAA-ACAAG
772 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CAAAAAAAAATACAAG
* * *
1578152 GATCACGTCTACCAAGTTT-AGGCCTAAAACTCTTTCCAAAAAAATTTTAAAAAATC-CTGAACT
836 GATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCAAAAAAATTTTAAAAAATCTC-GAACC
1578215 GTAA
899 GTAA
* *
1578219 AAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
1 AAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * ** * *
1578284 TACGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACACAAAAATAAGAAGATG
66 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * *
1578349 TGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTGGTCGGCATA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA
* ** * * *
1578414 GTGGCCGCTCGCCAACCTGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATATGGAGTTCACTCCCA
196 GTGCCCGCTCGCCGTCC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * *
1578479 GTCTCAGATCGGATCC-GACTGAGGGTTGTGGCAGCAGGATTGGCAGCATGCAGAGGGGGACCCG
260 GTCTAAGATCGGA-CCAGACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCG
** * * * *
1578543 GCTAAT-CCTGACTTACGCATCCTGCCCCTCTGGCTGGCTGAACGCCCGCACGCTCGTTTCGTGG
324 GCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGG
* * * *
1578607 GTTGACATAGGAATAAGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGAT
389 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * *
1578672 CAGACCAGAACGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTC
454 CAGACCAGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTC
* *
1578737 TTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCG
519 TTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCG
* * * *
1578802 ATCGGGGCGGCCGAGGGGGGGTGTACGCACATGATTTGCGTTGGGTGCTGGTACTTGGCCCTTAT
584 ATCGGGG-GGCC--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTAT
* *
1578867 ATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTT
646 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
1578932 ACAGGTTTGCTGCCAGTAACGATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
711 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
1578997 AATCTTGTACACTTCGAGCTTTTAGC-GAAATTTTTTTGTGCATGGCAAAAAAAAAATACAAGGA
776 AATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTTTGTGCAT-GC-AAAAAAAAATACAAGGA
*
1579061 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAA
838 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAA
* *
1579126 AAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
1 AAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
1579191 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATG
66 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * * *
1579256 TGCGTAAATCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTTTCTCTGGCCGGCGTA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA
* * * *
1579321 GTGCCCGCCCGCCCGTCCACCCGCTCGTTTCTTCGGTTGGCTTAGGTATACGGAGTTCATTCCCA
196 GTGCCCGCTCG-CCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * *
1579386 GTCTAAGATCGGACCAGAGCGAGGGTTGCGGCAACAGGATCGACAGCACACAGAGGGGGACCCGA
260 GTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCGG
* * * * * * *
1579451 CCGATCCCCGGCTTGCGCGTCCTGCTCTTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTTGG
325 CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGG
* *
1579516 TTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
390 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * **
1579581 -GAACC-GGACTGAGGGTTGCGACAGCACAAGCTGGGCTCGGGCATATGTTGGTGCTACATTTTT
455 AG-ACCAGAAC-GAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
* * * * ** * *
1579644 CTTCGTCGAGGCACCATTGTCAGAGCATCGTCGGAGTACCTGACCGGCGGCATTGGGGTTCCAGT
518 CTTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGC
* * *
1579709 GATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGTGTGCTAGTAGTTGGCCCTTATA
583 GATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATA
* *
1579774 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC-CGCCCTTTAAAGAGCATTTGAGATTTT
647 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC-CCCCTTAAAGAGCATTTGAGATTTT
*
1579838 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAA
711 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * *
1579903 AATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCA
776 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATCA
* * *
1579968 CGTCTATCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTGAAAAATCCCGAACCGTAA
841 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAA
* * * *
1580030 AAAGTTTCAAAAATAGTGAAAAATAGGAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCT
1 AAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
1580095 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
66 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* *
1580160 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCTACGTA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA
* * * * *
1580225 GTACCCTCCCGCCCGTGCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTA
196 GTGCCCGCTCG-CCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * *
1580290 ATCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCT-ACAGCATGTAAAGGGGGACCCG
260 GTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGAT-TGGCAGCACGCAGAGGGGGACCCG
* * *** ** * ** * * * * * * *
1580354 GCCGATCCCCGGCTAGCGCATTCATTCCTAATCTAAG--ATCAGACCAGACCG-AGGGTTGTGGT
324 GCCGATCCCCGACTTGCGCA-TCCCGCC-CCTCT-GGCCGGCTGAAC-GCCCGCACGCTCGT-TT
* * * ** * * * ** * * * * ****
1580416 AGCAGGATCT-ACAGCATGCAAAGGGGGACCCGGCCGA-TCCCCGGCTAGCGCATCTCGCCCCTC
384 CG-TGGGT-TGAC-TTAGGCATA--CGGA---GTTC-ATTCCCAGTCTA-AGCAT-ACGGAGTTC
** * * ** * *** * * *
1580479 -TAGCC-GGCTGAGCGCCCGCACACTTATTTCGTGGGTTGACTTGGGCA-TACGGGGTTTATTCC
438 ATTCCCAGTCTAAG-ATCAG-AC-C--AGAACGAGGGTTG-C---GGCAGCAC-------A-TGC
* * * ** * *
1580541 TAGTGTAAGCATACGGAGTTCAT-TCCCAATCTAAGATCGGACTGGACTGAGGGTTTCGGTAGCA
486 T-G-G---GC-T-C-GAG--CATGT-----GCT--GGT--G-C-CG-C--A-TTTTTC-TTCGC-
** * * * * * *
1580605 CATGCTGGGCTTGGGCAT-GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCACCGG-AGC
524 C--G--GGGC---ACCATCGT-C--G-G-AGCA-------TCACCGGAGAACC-TGACCGGCGGC
* ** * ** * *** * ** * **
1580668 ATCGCCGGAGAACC--TGA-CCAGCGG-CATTGGGGT-TCCGGCA-ATCGGCGGGGCCGGGGGGT
569 ATTG--GG-GTTCCAGCGATCGGGGGGCCGGGGGGGTGTGC-GCACAT--GATGTG-C-GATGG-
* ***
1580727 GTGCGCAGATGA-TGTGTGATGGGTGTAGGTACTTGGCCCTTATATTGGTGCCCTATCCCTCATC
625 GTGC-TAG-T-ACT-TG-G--CCCT-TA--TA-TTGG-CC-----------CCCTATCCCTCATC
1580791 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
667 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * *
1580856 ATTAAAGTGTTTGAAATGGGGACACTTGTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTT
732 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * *
1580921 TTAGCTGAATTTTTTTATGCAAGCCAAAAAAAATAGAAGGATCACGTCTACCAAGTTTGGGGCCA
797 TTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * *
1580986 AAAATCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAA
862 AAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAA
* * *
1581027 AAACTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
1 AAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
1581092 TAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
66 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* **
1581157 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA
** * * * * *
1581222 GTGCTTGCCCGCCCGTTCGCCCGCTCTTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTA
196 GTGCCCGCTCG-CCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* ** * * * * * ** * * *
1581287 GTCTAAGATCAGACTGGACTGAGGGTTGCAGCAGCAAGATCGATAACACGTAGAGGGGGACCCGA
260 GTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCGG
* * * * * *
1581352 TCGATCCCCGACTTGCACATCCCGCCCCTCT-ACTCGGCTGAGCGCCCGTACGCTCGTTTCATGG
325 CCGATCCCCGACTTGCGCATCCCGCCCCTCTGGC-CGGCTGAACGCCCGCACGCTCGTTTCGTGG
* * * * * *
1581416 GTTGACTTAGGGATACCGAGTTTATTCCCAGTCTAAG-ATCCGACCGGA-CTGAGGGTTGCGGCA
389 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT---A-CGGAGTTCA---TT-C-CCA
*** * * * ** *
1581479 G-C-AAGATCGGCAGCACGCAG-A-GAGGGACCCGGTCGATC-CTTGGCTTGCGCATCCCGCCCT
445 GTCTAAGAT---CAG-AC-CAGAACGAGGGTTGCGG-C-AGCACAT-GC-TGGGC-T--CGAGCA
* *** * * * * *
1581539 TTTGGCTGGCTGAACGCCCGCA-CGCTCGTTTCG-TGGGTTG-ACTTAGGCATACAGAGTTCATT
498 TGT-GCTGG-T----G-CCGCATTTTTC--TTCGCCGGG--GCAC-CA-TCGT-CGGAG--CA-T
*** * * * *** * * * * **
1581601 C-CCAGTCTAAGCAT-A-CGGAGTTCATTCTTAG-TCTA-AGATCGGACCGGACC--ATGGGT-T
546 CACC-GGAGAA-CCTGACCGGCG-GCATT-GGGGTTCCAGCGATCGG--GGGGCCGGGGGGGTGT
* * * * * * * * * * *
1581658 GCGGTAGC-TCATGCTGGGCTCGG-GC-ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACC-
605 GC-GCA-CATGATG-TGCGATGGGTGCTA-GTACTTG-GCC-C--TTATATT-----GGCCCCCT
* * * * * * *** * *** * *
1581719 AT-CGTCGGAGC-ATCGC-CAGAGAACTTGAC-CGGCGACATTGGGGCGGCCAAGGGGGGTGTGT
657 ATCCCTC--ATCAAAC-CTC-GAGAAC-TCACAC--C-CCCTTAAAG-AG-CATTTGAGAT-T-T
* * * * *** ** * * * * ** * **
1581780 GCACATGATGTGCGATG--GGT-GCTGGT-ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
710 -TACA-GGTTTGC--TGCCAGTAGCCATTAAAGT-G-TCTGAAATGGGGACACT-T---TTTTCA
* ** * *** * * * * *
1581841 AA-GCT-TGAGAA-CTCACACCCCCTTAAAGAGTATTT-G-AGATTTTATAGGTTTGCTGTCAGT
765 AATGGTCACAAAATCTTGTA--CACTT--CGAGTTTTTAGCTGAATTT-T---TTTG-TG-CA-T
* * *
1581901 AGCCATTAAAGCGTTTGAAATGGGGACACTTTTTCAAATGG-TCACAAAATCTTGTAGACCTTGA
819 -G-CA--AAA-------AAA-----A-A----TAC-AA-GGATCAC---GTC---T--ACC--AA
*** * ** ** * ** * * *
1581965 GTTTCTAGCTGAAATTTTTTGTGCACGCCAAAAAAAATACAAGGATCACATCTACCAAGTTCGGG
851 GTTTGGGGC-CAAAACTCCT-T-----CCAAAAAAATTTTAA--A--AAATCT-CGAA---C--C
**
1582030 GCCA
899 GTAA
*
1582034 AAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAATGTTTCAAAAATCGTGAAAAAT
1 AAAGT--TTC-G-AA-------------------------------------AATCGTGAAAAAT
* * *
1582099 AGAAAACGAGTCATCTTGCCCTGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTAC
25 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
***
1582164 AAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
90 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
1582229 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGATGCAGTG--C-C-CG-C--ACGCCCGCT
155 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCTCGCCGTCCGCCCGCT
* * * ** *
1582287 CGTTTCATCGGTTGGCTTAGGCATACGGAGTACATTCCCAGTCTAAGATCAGACTTGACCG-GCA
220 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAG-G
* * ** ** * * *
1582351 GTTGTGGTAGTAAAATCAGCAGCACGCAAAGGGGGACTCGACCGATCCCC-AGCTTGCGCATCCC
284 GTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGA-CTTGCGCATCCC
* ** * * *
1582415 GCCCCTCTGGCTGGCTGAGTGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCA
348 GCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * * * **
1582480 TTCCCAGTCTAAGCTTACGGAGTTAATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGATA
413 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACGAGGGTTGCGGCA
* * * * ** *
1582545 GCACATGCTGGGCTTGAGCATGTGCTGGTGCCGCATTTCTCTTCGCTGCGGCACCATCACCGAAG
478 GCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAG
**
1582610 CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCC-GGGGGGTGTGC
543 CATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATC-GGGGGGCCGGGGGGGTGTGC
* * *
1582674 GCACATGATGTGCGATGGGTACTGGTACTGGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
607 GCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
1582739 TC-ATGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGCCAGTAGCCATTA
672 TCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
1582803 AAGTGTCTAAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
736 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * * * * * *
1582868 CTG-ATTTTTTTCTTGCGTACCAACAAAAATACAAGGATCATGTGTACCACGTTTGGGGCCAAAA
801 CTGAATTTTTTT-GTGCATGCAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
1582932 CTCCTTCTAAAAAAATTTTAAAAAATCTTGAACCGCAA
865 CTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAA
* ** * *
1582970 AAAGTTTCAAAAATTTTGAAAAATAGAAAACGAGTTGTCTTGCGATGAAACTTCACGTGAAGGCT
1 AAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
** *** *
1583035 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTTCATTGGCACATAGAAATATGATGATG
66 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* *
1583100 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCTCATCCCGTCTCTCTGGCCGACGTA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA
** * * * *
1583165 ACGCCCGCCCTCC-TACCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCT
196 GTGCCCGCTCGCCGT--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * *** * * * * *
1583229 AGTCTAATATTGGACCAGACTGAGGGTTGCAACAGTAGGATCGACAGCACGTAAAGGGGGACCCG
259 AGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCG
** * ** * * * ** * *
1583294 GTTGATCCCCGGCTTATGCATCCCGTCCCTTTGGCTGATTGAGCGCCCGCACGCTCGTTTCGGGG
324 GCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGG
*
1583359 GTTGACTTAGGCATACGGTGTTCATTCCCA----AA-C-TA---AG---------A-TC--AGAT
389 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * ** * ** * *
1583403 C-GAACTG---G-GGGTTTCAACAGCTCATGCTATGCTCGGGCATGTGCTGGTGCCGTATTTTTC
454 CAGACCAGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTC
* * * *
1583463 TTCGCCAGGGCACCA---TC---G--T---CGGAGAACCTGATCGGCAGCATTGGGGTTTC-GAC
519 TTCGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAG-C
* *
1583516 GATCGGGGGGGCCGGGGGGGTGAGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
583 GATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATA
*
1583581 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA--CCCTTAAAGGGCATTTGAGATTTTA
647 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
1583644 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
712 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
1583709 ATCTTGTACACTTTGAGTTTTTAGCT-AAATTTTTTGTGCATGC-CAAAAAAATACAAGGATCAC
777 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATCAC
* *** ** *
1583772 GTCTATCAAGTTTGGAAACAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAA
842 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAA
* *
1583833 AAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
1 AAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
1583898 TAAAGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
66 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * * *
1583963 TGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCGTCCCGTCTCTCTGGCCTACGTA
131 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA
* * * * *
1584028 GTGCACG-T--CCGTCCGCCCAATCGCCCGTTTCATCAGTTGGCTTAGCCATACGGAGTTCATTC
196 GTGCCCGCTCGCCGTCCG-CC---CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
1584090 CCAGTCTAAGATTGGACCGGACCGAGGGTTGGGGCAGCAGGATCGGTAGCACGCAG-GGGGGAAC
257 CCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGG-AC
** * * * * * *
1584154 CCGATCGATCCCCGGCTTACGTAT-CCGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCA
321 CCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCG
* * * * *
1584218 TGGGTTGACTAAGGCATACAGAGTTCATTTCTAGTCTAAGCATACGGAGTTCATTCCCACTCTAA
386 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * *
1584283 GATCAGACCAGATCAAAGGTTGCGACAGCA
451 GATCAGACCAGAACGAGGGTTGCGGCAGCA
1584313 GGATCGGTAA
Statistics
Matches: 5588, Mismatches: 983, Indels: 868
0.75 0.13 0.12
Matches are distributed among these distances:
859 3 0.00
860 4 0.00
861 1 0.00
862 65 0.01
863 350 0.06
864 5 0.00
865 118 0.02
866 43 0.01
867 85 0.02
868 3 0.00
869 1 0.00
871 3 0.00
874 1 0.00
877 54 0.01
878 1 0.00
880 1 0.00
881 6 0.00
882 5 0.00
883 5 0.00
884 6 0.00
885 1 0.00
888 10 0.00
894 2 0.00
895 172 0.03
897 3 0.00
898 2 0.00
899 3 0.00
900 191 0.03
901 272 0.05
902 60 0.01
903 227 0.04
904 888 0.16
905 463 0.08
906 223 0.04
907 353 0.06
908 236 0.04
909 4 0.00
910 2 0.00
913 14 0.00
914 9 0.00
915 7 0.00
916 1 0.00
918 7 0.00
919 2 0.00
921 2 0.00
922 3 0.00
928 1 0.00
929 2 0.00
930 1 0.00
931 1 0.00
932 2 0.00
934 5 0.00
935 1 0.00
936 8 0.00
937 5 0.00
938 7 0.00
939 15 0.00
940 3 0.00
941 3 0.00
942 9 0.00
943 2 0.00
944 6 0.00
945 3 0.00
946 16 0.00
947 9 0.00
948 17 0.00
949 8 0.00
950 11 0.00
951 15 0.00
952 15 0.00
953 17 0.00
954 10 0.00
955 11 0.00
956 21 0.00
957 7 0.00
958 1 0.00
959 4 0.00
960 3 0.00
961 3 0.00
962 12 0.00
963 7 0.00
964 4 0.00
965 3 0.00
966 3 0.00
968 3 0.00
969 6 0.00
970 5 0.00
971 10 0.00
972 8 0.00
973 19 0.00
974 17 0.00
975 7 0.00
976 7 0.00
977 3 0.00
978 8 0.00
979 3 0.00
980 6 0.00
981 6 0.00
982 4 0.00
983 4 0.00
984 2 0.00
985 5 0.00
986 6 0.00
987 9 0.00
988 15 0.00
989 4 0.00
990 16 0.00
991 21 0.00
992 9 0.00
993 13 0.00
994 11 0.00
995 31 0.01
996 20 0.00
997 552 0.10
998 2 0.00
999 6 0.00
1000 1 0.00
1001 9 0.00
1002 3 0.00
1003 4 0.00
1004 13 0.00
1005 6 0.00
1006 3 0.00
1007 8 0.00
1009 8 0.00
1011 6 0.00
1012 27 0.00
1013 29 0.01
1014 5 0.00
1015 3 0.00
1016 2 0.00
1017 2 0.00
1018 6 0.00
1019 8 0.00
1020 4 0.00
1024 126 0.02
1025 128 0.02
1026 90 0.02
1027 31 0.01
1028 32 0.01
1029 43 0.01
1030 65 0.01
1031 76 0.01
1032 95 0.02
1033 65 0.01
1034 52 0.01
1035 44 0.01
1036 46 0.01
1037 38 0.01
1038 51 0.01
1039 40 0.01
1040 391 0.07
1041 69 0.01
1042 48 0.01
1043 32 0.01
1044 24 0.00
1045 15 0.00
1046 32 0.01
1047 45 0.01
1048 252 0.05
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
AAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTA
GTGCCCGCTCGCCGTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCGGC
CGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
GACCAGAACGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTT
CGCCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGAT
CGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCAAAAAAAAATACAAGGATCACGTCT
ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGTAA
Found at i:1579562 original size:26 final size:26
Alignment explanation
Indices: 1579525--1579577 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1579515 GTTGACTTAG
*
1579525 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1579551 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1579577 G
1 G
1579578 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Done.