Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 91 of 129
Found at i:14731408 original size:20 final size:20
Alignment explanation
Indices: 14731364--14731443 Score: 53
Period size: 20 Copynumber: 4.2 Consensus size: 20
14731354 TATATAAATA
*
14731364 AATAATA-AATAATTATTAT
1 AATAATATATTAATTATTAT
*
14731383 ACTAATATATTAATT-TTAAT
1 AATAATATATTAATTATT-AT
* * *
14731403 AATAATTTATT-GTTAATA-
1 AATAATATATTAATTATTAT
* *
14731421 AATAATATACT-ATTAATAT
1 AATAATATATTAATTATTAT
14731440 AATA
1 AATA
14731444 CATTAATAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
18 15 0.31
19 15 0.31
20 18 0.38
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (20 bp):
AATAATATATTAATTATTAT
Found at i:14731418 original size:17 final size:16
Alignment explanation
Indices: 14731364--14731426 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 16
14731354 TATATAAATA
*
14731364 AATAATAAATAATTATT
1 AATAATAATTAATT-TT
14731381 ATACTAATATATTAATTTT
1 A-A-TAATA-ATTAATTTT
*
14731400 AATAATAATTTATTGTT
1 AATAATAATTAATT-TT
14731417 AATAAATAAT
1 AAT-AATAAT
14731427 ATACTATTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
16 6 0.15
17 11 0.28
18 8 0.21
19 8 0.21
20 6 0.15
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (16 bp):
AATAATAATTAATTTT
Found at i:14731436 original size:18 final size:18
Alignment explanation
Indices: 14731415--14731565 Score: 71
Period size: 18 Copynumber: 9.6 Consensus size: 18
14731405 TAATTTATTG
14731415 TTAATAAATAATATACTA
1 TTAATAAATAATATACTA
14731433 TTAAT--AT-A-ATAC-A
1 TTAATAAATAATATACTA
14731446 TTAAT--A-AATA-AC-A
1 TTAATAAATAATATACTA
14731459 TTAATAAATAATATTA-TA
1 TTAATAAATAATA-TACTA
14731477 TTAATAAATAATATA--A
1 TTAATAAATAATATACTA
* *
14731493 -TAACAAAT-AT-TATTAA
1 TTAATAAATAATATACT-A
* *
14731509 TT--TAATTAATA-AATA
1 TTAATAAATAATATACTA
14731524 TT-AT-AAT-A-ATA-TA
1 TTAATAAATAATATACTA
14731537 TTAATAAATAATATACTA
1 TTAATAAATAATATACTA
14731555 TTAATATAATA
1 TTAATA-AATA
14731566 TATTAATAAA
Statistics
Matches: 106, Mismatches: 5, Indels: 43
0.69 0.03 0.28
Matches are distributed among these distances:
13 23 0.22
14 11 0.10
15 20 0.19
16 14 0.13
17 6 0.06
18 28 0.26
19 4 0.04
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.40
Consensus pattern (18 bp):
TTAATAAATAATATACTA
Found at i:14731450 original size:13 final size:13
Alignment explanation
Indices: 14731427--14731494 Score: 54
Period size: 13 Copynumber: 5.2 Consensus size: 13
14731417 AATAAATAAT
14731427 ATACTATTAATATA
1 ATAC-ATTAATATA
14731441 ATACATTAATA-A
1 ATACATTAATATA
14731453 ATAACATTAATA-A
1 AT-ACATTAATATA
*
14731466 ATA-ATATTATATTA
1 ATACAT-TAATA-TA
*
14731480 ATA-AATAATATA
1 ATACATTAATATA
14731492 ATA
1 ATA
14731495 ACAAATATTA
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
11 2 0.04
12 13 0.28
13 23 0.49
14 9 0.19
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.38
Consensus pattern (13 bp):
ATACATTAATATA
Found at i:14731450 original size:31 final size:30
Alignment explanation
Indices: 14731415--14731618 Score: 157
Period size: 31 Copynumber: 6.5 Consensus size: 30
14731405 TAATTTATTG
*
14731415 TTAATAAATAATATACTATTAATATAATACA
1 TTAATAAATAATATA-TATTAATATAATATA
* * *
14731446 TTAATAAATAACAT-TAATAAATAATATTATA
1 TTAATAAATAATATAT-ATTAAT-ATAATATA
*
14731477 TTAATAAATAATATA-A-TAACA-AATATTA
1 TTAATAAATAATATATATTAATATAATA-TA
* *
14731505 TTAATTTAATTAATAAATATT-ATAATAATATA
1 TTAA--TAAATAATATATATTAAT-ATAATATA
14731537 TTAATAAATAATATACTATTAATATAATATA
1 TTAATAAATAATATA-TATTAATATAATATA
* * *
14731568 TTAATAAATATTATTAATAAATCATATTACAATATA
1 TTAATAAATA--A-T-ATATAT--TAATATAATATA
14731604 TTAATAAATAATATA
1 TTAATAAATAATATA
14731619 AGGAATAATA
Statistics
Matches: 139, Mismatches: 16, Indels: 35
0.73 0.08 0.18
Matches are distributed among these distances:
27 3 0.02
28 7 0.05
29 3 0.02
30 24 0.17
31 56 0.40
32 13 0.09
33 6 0.04
34 4 0.03
35 3 0.02
36 20 0.14
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (30 bp):
TTAATAAATAATATATATTAATATAATATA
Found at i:14731493 original size:23 final size:25
Alignment explanation
Indices: 14731475--14731619 Score: 108
Period size: 26 Copynumber: 5.7 Consensus size: 25
14731465 AATAATATTA
14731475 TATTAATAAATAATATAATAACAAATAT
1 TATTAATAAATAATATAAT---AAATAT
*
14731503 TATTAAT--TTAAT-TAATAAATAT
1 TATTAATAAATAATATAATAAATAT
* *
14731525 TA-TAATAATATATTAATAAATAATATAC
1 TATTAATAA-ATAAT-AT-AATAA-ATAT
14731553 TATTAATATAAT-ATATTAATAAATAT
1 TATTAATA-AATAATA-TAATAAATAT
*
14731579 TATTAATAAATCATAT--TACAATA-
1 TATTAATAAATAATATAATA-AATAT
14731602 TATTAATAAATAATATAA
1 TATTAATAAATAATATAA
14731620 GGAATAATAA
Statistics
Matches: 96, Mismatches: 7, Indels: 31
0.72 0.05 0.23
Matches are distributed among these distances:
21 4 0.04
22 8 0.08
23 17 0.18
24 7 0.07
25 8 0.08
26 19 0.20
27 11 0.11
28 14 0.15
29 7 0.07
30 1 0.01
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (25 bp):
TATTAATAAATAATATAATAAATAT
Found at i:14731541 original size:91 final size:89
Alignment explanation
Indices: 14731350--14731619 Score: 224
Period size: 91 Copynumber: 2.9 Consensus size: 89
14731340 CTTATAAATA
* * * * * *
14731350 ATATTATATAAATAAATAATAAATAATTATTATACTAATATATTAATTTTAATAATAATTTATTG
1 ATATTA-ATAAATAAATAATAAATAA-TATTATATTAATA-AATAA-TATAATAACAATATATTA
*
14731415 TTAATAAATAATATACTATTAATATAAT
62 TTAATAAATAATATAATATTAATATAAT
*
14731443 ACATTAATAAATAACATTAATAAATAATATTATATTAATAAATAATATAATAACAA-ATATTATT
1 ATATTAATAAATAA-A-TAATAAATAATATTATATTAATAAATAATATAATAACAATATATTATT
*
14731507 AATTTAATTAATA-AATATT-ATAATAAT
64 AA--TAAATAATATAATATTAAT-ATAAT
* * *
14731534 ATATTAATAAATAATATACTATTAAT-ATAATATATTAATAAATATTATTAATAAATCATATTAC
1 ATATTAATAAATAA-ATA--ATAAATAATATTATATTAATAAATAATA-TAAT-AA-CA-A-TA-
*
14731598 AATATATTAATAAATAATATAA
57 TAT-TATTAATAAATAATATAA
14731620 GGAATAATAA
Statistics
Matches: 145, Mismatches: 16, Indels: 27
0.77 0.09 0.14
Matches are distributed among these distances:
90 12 0.08
91 52 0.36
92 29 0.20
93 20 0.14
94 12 0.08
95 1 0.01
97 9 0.06
98 4 0.03
99 6 0.04
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (89 bp):
ATATTAATAAATAAATAATAAATAATATTATATTAATAAATAATATAATAACAATATATTATTAA
TAAATAATATAATATTAATATAAT
Found at i:14731549 original size:67 final size:68
Alignment explanation
Indices: 14731478--14731616 Score: 155
Period size: 67 Copynumber: 2.1 Consensus size: 68
14731468 AATATTATAT
* *
14731478 TAATAAATAATA-TAATA-ACAAATATT-ATTAAT-TTAATTAATAAAT-ATTATAATAATATAT
1 TAAT-AATAATATTAATATA-AAATATTAATAAATATT-ATTAATAAATCA-TATAACAATATAT
14731538 TAATAAA
62 TAATAAA
* * *
14731545 TAAT-ATACTATTAATATAATATATTAATAAATATTATTAATAAATCATATTACAATATATTAAT
1 TAATAATAATATTAATATAAAATATTAATAAATATTATTAATAAATCATATAACAATATATTAAT
14731609 AAA
66 AAA
14731612 TAATA
1 TAATA
14731617 TAAGGAATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 11
0.79 0.06 0.14
Matches are distributed among these distances:
65 5 0.08
66 11 0.18
67 42 0.69
68 3 0.05
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (68 bp):
TAATAATAATATTAATATAAAATATTAATAAATATTATTAATAAATCATATAACAATATATTAAT
AAA
Found at i:14731568 original size:18 final size:17
Alignment explanation
Indices: 14731342--14731568 Score: 69
Period size: 15 Copynumber: 14.6 Consensus size: 17
14731332 TAATTTTACT
14731342 TATAA-ATA-ATATT-A
1 TATAATATATATATTAA
* *
14731356 TATAA-ATAAATAATAA
1 TATAATATATATATTAA
*
14731372 -ATAAT-TATTATACTAA
1 TATAATATA-TATATTAA
*
14731388 TAT-AT-TA-ATTTTAA
1 TATAATATATATATTAA
* *
14731402 TAATAATTTAT-TGTTAA
1 T-ATAATATATATATTAA
14731419 TA-AATAATATACTATTAA
1 TATAAT-ATATA-TATTAA
* *
14731437 TATAATACAT-TAATAA
1 TATAATATATATATTAA
*
14731453 -ATAACAT-TA-A-TAA
1 TATAATATATATATTAA
14731466 -ATAATAT-TATATTAA
1 TATAATATATATATTAA
*
14731481 TA-AATA-ATATAAT-A
1 TATAATATATATATTAA
*
14731495 -ACAA-ATAT-TATTAA
1 TATAATATATATATTAA
* * *
14731509 TTTAAT-TA-ATAAATAT
1 TATAATATATAT-ATTAA
14731525 TATAATA-ATATATTAA
1 TATAATATATATATTAA
14731541 TA-AATAATATACTATTAA
1 TATAAT-ATATA-TATTAA
14731559 TATAATATAT
1 TATAATATAT
14731569 TAATAAATAT
Statistics
Matches: 160, Mismatches: 22, Indels: 58
0.67 0.09 0.24
Matches are distributed among these distances:
13 16 0.10
14 23 0.14
15 40 0.25
16 38 0.24
17 15 0.09
18 22 0.14
19 6 0.04
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
TATAATATATATATTAA
Found at i:14731776 original size:25 final size:26
Alignment explanation
Indices: 14731721--14731779 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
14731711 ATTAATAACG
14731721 TTAATAATAAATAATTTCAATATATT
1 TTAATAATAAATAATTTCAATATATT
**
14731747 TTAATAATAAATAATTTTTA-ATATT
1 TTAATAATAAATAATTTCAATATATT
14731772 TTAATAAT
1 TTAATAAT
14731780 TATTTAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 13 0.42
26 18 0.58
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (26 bp):
TTAATAATAAATAATTTCAATATATT
Found at i:14735164 original size:25 final size:25
Alignment explanation
Indices: 14735110--14735156 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
14735100 TAAAATCAAT
* *
14735110 ATATT-TTTATCATATTTTATATAA
1 ATATTATTTATAATAATTTATATAA
*
14735134 AAATTATTTATAATAATTTATAT
1 ATATTATTTATAATAATTTATAT
14735157 TGATATTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 4 0.21
25 15 0.79
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (25 bp):
ATATTATTTATAATAATTTATATAA
Found at i:14736613 original size:19 final size:20
Alignment explanation
Indices: 14736588--14736631 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
14736578 ATGTCGTCGA
14736588 CAAAGTCACCATTATACAAT
1 CAAAGTCACCATTATACAAT
*
14736608 -AAAGTCATCATTATACAAT
1 CAAAGTCACCATTATACAAT
14736627 CAAAG
1 CAAAG
14736632 AATTTGAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.48, C:0.20, G:0.07, T:0.25
Consensus pattern (20 bp):
CAAAGTCACCATTATACAAT
Found at i:14736651 original size:82 final size:82
Alignment explanation
Indices: 14736441--14736682 Score: 340
Period size: 82 Copynumber: 2.9 Consensus size: 82
14736431 CATGTCGTCG
* * *
14736441 ACAAAGTCATCATTATCCAATCAGAGTATTTGAGTTTGCTCCTGTAGATGGACCATGTCGTCGAC
1 ACAAAGTCATCATTATACAATCAGAGAATTTGAGTTTACTCCTGTAGATGGACCATGTCGTCGAC
* **
14736506 AATGTCATCGTTTATACA
66 AAAGTCA-CCATTATACA
* * * * *
14736524 ACAATGTCACCATTATACAATCAGACAATTTGAGTTTTCTTCTGTAGATGGACCATGTCGTCGAC
1 ACAAAGTCATCATTATACAATCAGAGAATTTGAGTTTACTCCTGTAGATGGACCATGTCGTCGAC
14736589 AAAGTCACCATTATACA
66 AAAGTCACCATTATACA
* * * *
14736606 ATAAAGTCATCATTATACAATCAAAGAATTTGAGTCTACTCCTGTAGATGGACCATGTCGTCTAC
1 ACAAAGTCATCATTATACAATCAGAGAATTTGAGTTTACTCCTGTAGATGGACCATGTCGTCGAC
14736671 AAAGTCACCATT
66 AAAGTCACCATT
14736683 TCATTGCTAA
Statistics
Matches: 140, Mismatches: 19, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
82 76 0.54
83 64 0.46
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (82 bp):
ACAAAGTCATCATTATACAATCAGAGAATTTGAGTTTACTCCTGTAGATGGACCATGTCGTCGAC
AAAGTCACCATTATACA
Found at i:14737783 original size:11 final size:11
Alignment explanation
Indices: 14737767--14737792 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14737757 ATTAGAGGGG
14737767 AAATAAAAGAT
1 AAATAAAAGAT
14737778 AAATAAAAGAT
1 AAATAAAAGAT
14737789 AAAT
1 AAAT
14737793 CACTTACTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.08, T:0.19
Consensus pattern (11 bp):
AAATAAAAGAT
Found at i:14738163 original size:15 final size:15
Alignment explanation
Indices: 14738139--14738181 Score: 77
Period size: 15 Copynumber: 2.9 Consensus size: 15
14738129 CATTTGACGA
*
14738139 GCACTTTTGCCTTGG
1 GCACTATTGCCTTGG
14738154 GCACTATTGCCTTGG
1 GCACTATTGCCTTGG
14738169 GCACTATTGCCTT
1 GCACTATTGCCTT
14738182 ATTTGGTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.12, C:0.28, G:0.23, T:0.37
Consensus pattern (15 bp):
GCACTATTGCCTTGG
Found at i:14739474 original size:16 final size:17
Alignment explanation
Indices: 14739443--14739480 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
14739433 ATATCAAATT
*
14739443 AATAATTAATTAATAAA
1 AATAATTAAATAATAAA
14739460 AATAA-TAAATAATAAA
1 AATAATTAAATAATAAA
14739476 AATAA
1 AATAA
14739481 GTTAGGACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
AATAATTAAATAATAAA
Found at i:14743028 original size:17 final size:18
Alignment explanation
Indices: 14743008--14743043 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
14742998 AGAAGATTGA
*
14743008 TTTT-AAATTTATATTAT
1 TTTTAAAATTTATAATAT
14743025 TTTTAAAATTTATAATAT
1 TTTTAAAATTTATAATAT
14743043 T
1 T
14743044 ATATATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTAAAATTTATAATAT
Found at i:14744759 original size:76 final size:76
Alignment explanation
Indices: 14744633--14744773 Score: 255
Period size: 76 Copynumber: 1.9 Consensus size: 76
14744623 TTTGTTCTAA
*
14744633 CCGTCCGAATCTGGGTCCCCTCTCTTTGGAGCTTCATGTTCCTATAGGCTATATGTTAATCTAAC
1 CCGTCCGAATCCGGGTCCCCTCTCTTTGGAGCTTCATGTTCCTATAGGCTATATGTTAATCTAAC
14744698 AAATGAAAATC
66 AAATGAAAATC
* *
14744709 CCGTCCGAATCCGGGTCCGCTTTCTTTGGAGCTTCATGTTCCTATAGGCTATATGTTAATCTAAC
1 CCGTCCGAATCCGGGTCCCCTCTCTTTGGAGCTTCATGTTCCTATAGGCTATATGTTAATCTAAC
14744774 CTCACAGGCT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 62 1.00
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (76 bp):
CCGTCCGAATCCGGGTCCCCTCTCTTTGGAGCTTCATGTTCCTATAGGCTATATGTTAATCTAAC
AAATGAAAATC
Found at i:14745047 original size:240 final size:240
Alignment explanation
Indices: 14744624--14745253 Score: 1039
Period size: 240 Copynumber: 2.6 Consensus size: 240
14744614 TTTGTCTGTT
* * * *
14744624 TTGTTCTAACCGTCCGAATCTGGGTCCCCTCTCTTTGGAGCTTCATGTTC-CTATAGGCTATATG
1 TTGTTCTAACCGTCCGAATCTGGGTCCCCTCTCTTTGGAGCTTCTTG-TCACCATGGGCTAAATG
* *
14744688 TTAATCTAACAAATGAAAATCCCGTCCGAATCCGGGTCCGCT-TTCTTTGGAGCTTCATGTTCCT
65 TTAATCTAACAAATGAAAATCCCGTCCGAATCTGGGTCCCCTCTT-TTTGGAGCTTCATGTTCCT
*
14744752 ATAGGCTATATGTTAATCTAACCTCACAGGCTAACAAGATGACAATCCTGTCGGAAACTCTTCTC
129 ATAGGCTATATGTTAATCTAACCTCACAGGCTAACAAGATGAAAATCCTGTCGGAAACTCTTCTC
*
14744817 TTCGTCTGCATTTTCATGACTGTTTTGTTGATCTATTTGGATAGACG
194 TTCGTCTGCATTTTCATGACTGTTTTGTTGAGCTATTTGGATAGACG
* *
14744864 TTGTTCTAACAGACCGAATCTGGGTCCCCTCTCTTTGGAGCTTCTTGTCACCATGGGCTAAATGT
1 TTGTTCTAACCGTCCGAATCTGGGTCCCCTCTCTTTGGAGCTTCTTGTCACCATGGGCTAAATGT
* * *
14744929 TAATCTAACAAATGAAAATCCCGTCCGCATCTGGGTCCTCTCTTTTTGGAGCTTCATGTTCCTAG
66 TAATCTAACAAATGAAAATCCCGTCCGAATCTGGGTCCCCTCTTTTTGGAGCTTCATGTTCCTAT
** *
14744994 AGGCTCGATGTTAATCTAACTTCACAGGCTAACAAGATGAAAATCCTGTCGGAAACTCTTCTCTT
131 AGGCTATATGTTAATCTAACCTCACAGGCTAACAAGATGAAAATCCTGTCGGAAACTCTTCTCTT
*
14745059 CGTCTGCGTTTTCATGACTGTTTTGTTGAGCTATTTGGATAGACG
196 CGTCTGCATTTTCATGACTGTTTTGTTGAGCTATTTGGATAGACG
*
14745104 TTGTTCTAACCGTCCGAATCTGGGTCCCCTCTCTTTGGCGCTTCTTGTCACCATGGGCTAAATGT
1 TTGTTCTAACCGTCCGAATCTGGGTCCCCTCTCTTTGGAGCTTCTTGTCACCATGGGCTAAATGT
* * *
14745169 TAATCTAACAAATGAAAATCCCGTCCAAATCTGGGTCCCCTCTCTTTGGAGCTTCACGTTCCTAT
66 TAATCTAACAAATGAAAATCCCGTCCGAATCTGGGTCCCCTCTTTTTGGAGCTTCATGTTCCTAT
14745234 AGGCTATATGTTAATCTAAC
131 AGGCTATATGTTAATCTAAC
14745254 AAATGAAAAT
Statistics
Matches: 361, Mismatches: 27, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
239 2 0.01
240 357 0.99
241 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.34
Consensus pattern (240 bp):
TTGTTCTAACCGTCCGAATCTGGGTCCCCTCTCTTTGGAGCTTCTTGTCACCATGGGCTAAATGT
TAATCTAACAAATGAAAATCCCGTCCGAATCTGGGTCCCCTCTTTTTGGAGCTTCATGTTCCTAT
AGGCTATATGTTAATCTAACCTCACAGGCTAACAAGATGAAAATCCTGTCGGAAACTCTTCTCTT
CGTCTGCATTTTCATGACTGTTTTGTTGAGCTATTTGGATAGACG
Found at i:14745239 original size:76 final size:76
Alignment explanation
Indices: 14745113--14745329 Score: 328
Period size: 76 Copynumber: 2.9 Consensus size: 76
14745103 GTTGTTCTAA
* * * * *
14745113 CCGTCCGAATCTGGGTCCCCTCTCTTTGGCGCTTCTTG-TCACCATGGGCTAAATGTTAATCTAA
1 CCGTCCGAATCTGGGTCCCCTCTCTTTGGAGCTTCATGTTC-CTATAGGCTATATGTTAATCTAA
14745177 CAAATGAAAATC
65 CAAATGAAAATC
* *
14745189 CCGTCCAAATCTGGGTCCCCTCTCTTTGGAGCTTCACGTTCCTATAGGCTATATGTTAATCTAAC
1 CCGTCCGAATCTGGGTCCCCTCTCTTTGGAGCTTCATGTTCCTATAGGCTATATGTTAATCTAAC
14745254 AAATGAAAATC
66 AAATGAAAATC
* * *
14745265 CCGTCCGCATCTGGGTCCTCTCTTTTTGGAGCTTCATGTTCCTATAGGCTATATGTTAATCTAAC
1 CCGTCCGAATCTGGGTCCCCTCTCTTTGGAGCTTCATGTTCCTATAGGCTATATGTTAATCTAAC
14745330 CTCACAGGCT
Statistics
Matches: 128, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
76 126 0.98
77 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.33
Consensus pattern (76 bp):
CCGTCCGAATCTGGGTCCCCTCTCTTTGGAGCTTCATGTTCCTATAGGCTATATGTTAATCTAAC
AAATGAAAATC
Found at i:14746953 original size:58 final size:57
Alignment explanation
Indices: 14746854--14747191 Score: 401
Period size: 58 Copynumber: 5.7 Consensus size: 57
14746844 TCTTGTGTAG
*
14746854 GGAAGATTGATACTTTCAACTTTTTCCCAAAAAT-TATTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAAC-TTTTCCCAAAAATCT-TTTTTTGAAAATTTATTTTTAA
* *
14746912 GGAAAATTGATACTTTCAACTTTTTTCCAAAAATCTCTTTTTTTGAAATTTTATTTTTTAA
1 GGAAAATTGATACTTTCAAC-TTTTCCCAAAAA--TCTTTTTTTGAAAATTTA-TTTTTAA
* *
14746973 GAAAAATTGATACTTTCAACATTTCCTCAAAAATCTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATCTTTTTTTGAAAATTTATTTTTAA
* * *
14747031 GGAAAATTGATACTTTCAACTTTTCCCTCAAAAT-ATTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATCTTTTTTTGAAAATTTATTTTTAA
* * ***
14747088 GGAAAATTGATACTTTTAACTTTTCCTCAAAAACCTTTTTTTTTTTAATTTATTTTTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATC-TTTTTTTGAAAATTTA---TTTTTAA
* *
14747150 AGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATCTTTTTTT
14747192 TTGGAAATTT
Statistics
Matches: 243, Mismatches: 24, Indels: 23
0.84 0.08 0.08
Matches are distributed among these distances:
57 51 0.21
58 68 0.28
59 29 0.12
60 19 0.08
61 41 0.17
62 35 0.14
ACGTcount: A:0.34, C:0.12, G:0.06, T:0.48
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATCTTTTTTTGAAAATTTATTTTTAA
Found at i:14747013 original size:119 final size:117
Alignment explanation
Indices: 14746859--14747209 Score: 433
Period size: 119 Copynumber: 2.9 Consensus size: 117
14746849 TGTAGGGAAG
14746859 ATTGATACTTTCAACTTTTTCC-CAAAAAT-TATTTTTTGAAAATTTATTTTTAAGGAAAATTGA
1 ATTGATACTTTCAAC-TTTTCCTCAAAAATCT-TTTTTTGAAAATTTATTTTTAAGGAAAATTGA
*
14746922 TACTTTCAACTTTTTTCC-AAAAATCTCTTTTTTTGAAATTTTATTTTTTAAGAAAA
64 TACTTTCAAC-TTTTCCCTAAAAAT-T-TTTTTTTGAAATTTTATTTTTTAAGAAAA
*
14746978 ATTGATACTTTCAACATTTCCTCAAAAATCTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATA
1 ATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATA
* * * * *
14747043 CTTTCAACTTTTCCCTCAAAA-TATTTTTTGAAAATTTA-TTTCTAAGGAAA
66 CTTTCAACTTTTCCCTAAAAATTTTTTTTTGAAATTTTATTTTTTAAGAAAA
* * *** *
14747093 ATTGATACTTTTAACTTTTCCTCAAAAACCTTTTTTTTTTTAATTTATTTTTTTTAAAGAAAATT
1 ATTGATACTTTCAACTTTTCCTCAAAAATC-TTTTTTTGAAAATTTA---TTTTTAAGGAAAATT
14747158 GATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTTGATTTTT
62 GATACTTTCAACTTTTCCCT-AAAA-ATTTTTTTTT-GAAATTTT-ATTTTT
14747210 ATTTAAAAAA
Statistics
Matches: 201, Mismatches: 18, Indels: 20
0.84 0.08 0.08
Matches are distributed among these distances:
115 37 0.18
116 27 0.13
117 1 0.00
118 11 0.05
119 102 0.51
120 4 0.02
121 1 0.00
122 7 0.03
123 7 0.03
124 1 0.00
125 3 0.01
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.49
Consensus pattern (117 bp):
ATTGATACTTTCAACTTTTCCTCAAAAATCTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATA
CTTTCAACTTTTCCCTAAAAATTTTTTTTTGAAATTTTATTTTTTAAGAAAA
Found at i:14747242 original size:26 final size:26
Alignment explanation
Indices: 14747213--14747316 Score: 79
Period size: 26 Copynumber: 3.8 Consensus size: 26
14747203 GATTTTTATT
14747213 TAAAAAAAATAGAATAATAAAAAAAA
1 TAAAAAAAATAGAATAATAAAAAAAA
14747239 TAAAAAAAAT-GAAAGTGAAAATAAATAAAAA
1 TAAAAAAAATAG-AA-T---AATAAA-AAAAA
* * *
14747270 TAAAAAAAACAAAATAA-AAATAAAA
1 TAAAAAAAATAGAATAATAAAAAAAA
*
14747295 TAAAGATAAAA-AGAATATTAAA
1 TAAA-A-AAAATAGAATAATAAA
14747317 TAAACCTAAT
Statistics
Matches: 63, Mismatches: 5, Indels: 19
0.72 0.06 0.22
Matches are distributed among these distances:
25 9 0.14
26 21 0.33
27 10 0.16
30 7 0.11
31 16 0.25
ACGTcount: A:0.77, C:0.01, G:0.06, T:0.16
Consensus pattern (26 bp):
TAAAAAAAATAGAATAATAAAAAAAA
Found at i:14747270 original size:6 final size:6
Alignment explanation
Indices: 14747217--14747306 Score: 53
Period size: 6 Copynumber: 14.8 Consensus size: 6
14747207 TTTATTTAAA
* * * *
14747217 AAAAAT AGAATAAT AAAAA- AAATAAA AAAAAT GAAAGT GAAAAT --AAAT
1 AAAAAT A-AA-AAT AAAAAT AAA-AAT AAAAAT AAAAAT AAAAAT AAAAAT
* *
14747265 AAAAAT AAAAAAA ACAAAAT AAAAAT -AAAAT AAAGAT AAAAA
1 AAAAAT -AAAAAT A-AAAAT AAAAAT AAAAAT AAAAAT AAAAA
14747307 GAATATTAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
4 4 0.06
5 8 0.12
6 34 0.51
7 17 0.25
8 4 0.06
ACGTcount: A:0.79, C:0.01, G:0.06, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:14747275 original size:30 final size:30
Alignment explanation
Indices: 14747214--14747306 Score: 100
Period size: 31 Copynumber: 3.0 Consensus size: 30
14747204 ATTTTTATTT
14747214 AAAA-AAAATAGAATAATAAA-AAAAATAAAA
1 AAAACAAAATA-AA-AATAAATAAAAATAAAA
* * *
14747244 AAAATGAAAGTGAAAATAAATAAAAATAAAA
1 AAAA-CAAAATAAAAATAAATAAAAATAAAA
*
14747275 AAAACAAAATAAAAATAAAATAAAGATAAAA
1 AAAACAAAATAAAAAT-AAATAAAAATAAAA
14747306 A
1 A
14747307 GAATATTAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
30 19 0.36
31 30 0.57
32 4 0.08
ACGTcount: A:0.80, C:0.01, G:0.05, T:0.14
Consensus pattern (30 bp):
AAAACAAAATAAAAATAAATAAAAATAAAA
Found at i:14747303 original size:11 final size:11
Alignment explanation
Indices: 14747214--14747305 Score: 65
Period size: 11 Copynumber: 8.8 Consensus size: 11
14747204 ATTTTTATTT
14747214 AAAA-AAAATA
1 AAAATAAAATA
14747224 GAATAAT-AAA-A
1 -AA-AATAAAATA
14747235 AAAAT-AAA-A
1 AAAATAAAATA
* *
14747244 AAAATGAAAGTG
1 AAAAT-AAAATA
14747256 AAAAT-AAATA
1 AAAATAAAATA
14747266 AAAAT-AAA-A
1 AAAATAAAATA
*
14747275 AAAACAAAATA
1 AAAATAAAATA
14747286 AAAATAAAATA
1 AAAATAAAATA
*
14747297 AAGATAAAA
1 AAAATAAAA
14747306 AGAATATTAA
Statistics
Matches: 67, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
9 17 0.25
10 16 0.24
11 24 0.36
12 10 0.15
ACGTcount: A:0.79, C:0.01, G:0.05, T:0.14
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:14747359 original size:27 final size:26
Alignment explanation
Indices: 14747258--14747384 Score: 74
Period size: 27 Copynumber: 5.1 Consensus size: 26
14747248 TGAAAGTGAA
14747258 AATAAATAAAAATAAAAA-AAACAAAA
1 AATAAAT-AAAATAAAAATAAACAAAA
* *
14747284 TAA-AAATAAAATAAAGAT-AA-AAAG
1 -AATAAATAAAATAAAAATAAACAAAA
* ** * *
14747308 AAT--ATTAAATAAACCTAATCTAATA
1 AATAAATAAAATAAAAATAAAC-AAAA
14747333 AATAAATAAAATAAAAATAAACAAATA
1 AATAAATAAAATAAAAATAAACAAA-A
* *
14747360 AACAAAT-AAATGAAAA-AAA-AAAA
1 AATAAATAAAATAAAAATAAACAAAA
14747383 AA
1 AA
14747385 CCTAGAGCGG
Statistics
Matches: 77, Mismatches: 15, Indels: 20
0.69 0.13 0.18
Matches are distributed among these distances:
22 10 0.13
23 6 0.08
24 6 0.08
25 19 0.25
26 14 0.18
27 22 0.29
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.17
Consensus pattern (26 bp):
AATAAATAAAATAAAAATAAACAAAA
Found at i:14748309 original size:3 final size:3
Alignment explanation
Indices: 14748303--14748416 Score: 67
Period size: 3 Copynumber: 36.3 Consensus size: 3
14748293 ACAAAAAAAA
14748303 AAT AAT AAT AAT AAT -AT AAT AAT AAT AAAT ATAT AACT ATAT ACAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT A-AT AA-T A-AT A-AT
* * * *
14748349 -AT AA- ATCT AAT -CT AAT AAT AAA AAT ATAT ATAT ATT AAT ACAT AAT
1 AAT AAT A-AT AAT AAT AAT AAT AAT AAT A-AT A-AT AAT AAT A-AT AAT
14748395 AAT AAT AAT AAAT AAT AA- AAT A
1 AAT AAT AAT -AAT AAT AAT AAT A
14748417 CAAAAAAAAA
Statistics
Matches: 89, Mismatches: 9, Indels: 26
0.72 0.07 0.21
Matches are distributed among these distances:
2 8 0.09
3 54 0.61
4 26 0.29
5 1 0.01
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:14748323 original size:14 final size:14
Alignment explanation
Indices: 14748304--14748416 Score: 78
Period size: 14 Copynumber: 8.1 Consensus size: 14
14748294 CAAAAAAAAA
14748304 ATAATAATAATAAT
1 ATAATAATAATAAT
14748318 ATAATAATAATAA-
1 ATAATAATAATAAT
14748331 ATATATAACTATATACAT
1 ATA-ATAA-TA-ATA-AT
*
14748349 AT-A-AAT-CTAAT
1 ATAATAATAATAAT
* *
14748360 CTAATAATAAAAAT
1 ATAATAATAATAAT
*
14748374 ATATATATATTAAT-AC
1 ATA-ATA-A-TAATAAT
14748390 ATAATAATAATAAT
1 ATAATAATAATAAT
14748404 A-AATAATAA-AAT
1 ATAATAATAATAAT
14748416 A
1 A
14748417 CAAAAAAAAA
Statistics
Matches: 79, Mismatches: 8, Indels: 26
0.70 0.07 0.23
Matches are distributed among these distances:
11 3 0.04
12 7 0.09
13 18 0.23
14 26 0.33
15 10 0.13
16 9 0.11
17 4 0.05
18 2 0.03
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (14 bp):
ATAATAATAATAAT
Found at i:14750808 original size:20 final size:21
Alignment explanation
Indices: 14750779--14750819 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
14750769 AAAAAATCTC
*
14750779 TAATATTTAAAT-ATAAAAAT
1 TAATAATTAAATAATAAAAAT
*
14750799 TAATAATTAATTAATAAAAAT
1 TAATAATTAAATAATAAAAAT
14750820 AAGTTAGGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
TAATAATTAAATAATAAAAAT
Found at i:14752053 original size:18 final size:20
Alignment explanation
Indices: 14752026--14752069 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
14752016 TGATATAAAA
*
14752026 TATTAAAATT-TATTTT-TT
1 TATTATAATTGTATTTTATT
14752044 TATTATAATTGTATTTTATT
1 TATTATAATTGTATTTTATT
14752064 T-TTATA
1 TATTATA
14752070 CTACTTGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 9 0.39
19 11 0.48
20 3 0.13
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (20 bp):
TATTATAATTGTATTTTATT
Found at i:14752332 original size:14 final size:16
Alignment explanation
Indices: 14752315--14752351 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
14752305 AATAAAATTA
14752315 TTTATTTGC-TATA-T
1 TTTATTTGCTTATACT
*
14752329 TTTATTTTCTTATACT
1 TTTATTTGCTTATACT
14752345 TTTATTT
1 TTTATTT
14752352 TAAATTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 8 0.40
15 4 0.20
16 8 0.40
ACGTcount: A:0.19, C:0.08, G:0.03, T:0.70
Consensus pattern (16 bp):
TTTATTTGCTTATACT
Found at i:14752981 original size:2 final size:2
Alignment explanation
Indices: 14752974--14753000 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14752964 TAAAGCTCAA
14752974 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
14753001 AAATAATTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14754143 original size:29 final size:29
Alignment explanation
Indices: 14754101--14754158 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
14754091 TTCAGACAGG
14754101 AGTTTTACAGTACAAATTTGAAATAAAAT
1 AGTTTTACAGTACAAATTTGAAATAAAAT
*
14754130 AGTTTTACAGTACAAATTTGAAGTAAAAT
1 AGTTTTACAGTACAAATTTGAAATAAAAT
14754159 TTGTGCAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (29 bp):
AGTTTTACAGTACAAATTTGAAATAAAAT
Found at i:14757522 original size:10 final size:10
Alignment explanation
Indices: 14757507--14757534 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
14757497 ACCATGGATT
14757507 TTCTTTTCTG
1 TTCTTTTCTG
14757517 TTCTTTTCTG
1 TTCTTTTCTG
14757527 TTCTTTTC
1 TTCTTTTC
14757535 GGTTTTCTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.00, C:0.21, G:0.07, T:0.71
Consensus pattern (10 bp):
TTCTTTTCTG
Found at i:14757525 original size:15 final size:16
Alignment explanation
Indices: 14757505--14757550 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
14757495 CCACCATGGA
* *
14757505 TTTTCTTTTCTGTTC-
1 TTTTCTGTTCTTTTCG
14757520 TTTTCTGTTCTTTTCGG
1 TTTTCTGTTCTTTTC-G
14757537 TTTTCTGTT-TTTTC
1 TTTTCTGTTCTTTTC
14757551 AATTACCGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 13 0.48
16 5 0.19
17 9 0.33
ACGTcount: A:0.00, C:0.17, G:0.11, T:0.72
Consensus pattern (16 bp):
TTTTCTGTTCTTTTCG
Found at i:14758118 original size:16 final size:16
Alignment explanation
Indices: 14758097--14758131 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
14758087 GCCAACCGTT
14758097 AAATTA-AAAAGAAAAA
1 AAATTAGAAAA-AAAAA
14758113 AAATTAGAAAAAAAAA
1 AAATTAGAAAAAAAAA
14758129 AAA
1 AAA
14758132 GCCAACCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.11
Consensus pattern (16 bp):
AAATTAGAAAAAAAAA
Found at i:14758128 original size:17 final size:16
Alignment explanation
Indices: 14758097--14758131 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
14758087 GCCAACCGTT
*
14758097 AAATTAAAAAGAAAAA
1 AAATTAAAAAAAAAAA
14758113 AAATTAGAAAAAAAAAA
1 AAATTA-AAAAAAAAAA
14758130 AA
1 AA
14758132 GCCAACCAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.11
Consensus pattern (16 bp):
AAATTAAAAAAAAAAA
Found at i:14760242 original size:18 final size:18
Alignment explanation
Indices: 14760189--14760244 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
14760179 ATATAAATTT
*
14760189 TAAATTTTTTTAAA-ATA
1 TAAATTTATTTAAACATA
*
14760206 -AAATAATTATTT-TACATA
1 TAAAT--TTATTTAAACATA
14760224 TAAATTTATTTAAACATA
1 TAAATTTATTTAAACATA
14760242 TAA
1 TAA
14760245 TAGTAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
16 4 0.13
17 7 0.23
18 16 0.52
19 4 0.13
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (18 bp):
TAAATTTATTTAAACATA
Found at i:14760887 original size:6 final size:6
Alignment explanation
Indices: 14760876--14760914 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
14760866 AATACAATAA
14760876 TTTGGC TTTGGC TTTGGC TTTGGC TTTGGC TTTGGC TTT
1 TTTGGC TTTGGC TTTGGC TTTGGC TTTGGC TTTGGC TTT
14760915 TATCATAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.00, C:0.15, G:0.31, T:0.54
Consensus pattern (6 bp):
TTTGGC
Found at i:14761739 original size:21 final size:20
Alignment explanation
Indices: 14761715--14761820 Score: 79
Period size: 21 Copynumber: 4.8 Consensus size: 20
14761705 AATTGAAATT
14761715 AATAAAATATTTATTTTTTAA
1 AATAAAATA-TTATTTTTTAA
*
14761736 AATATAAA-ATAATATTTTTAA
1 AATA-AAATATTAT-TTTTTAA
*
14761757 CATAAAATATTATTTTTTAA
1 AATAAAATATTATTTTTTAA
*
14761777 TATAAATATAAAATATATTTTTTAAA
1 AATAAA-AT---AT-TATTTTTT-AA
*
14761803 ATATAAAATAGTATTTTT
1 A-ATAAAATATTATTTTT
14761821 ACCTGAGGTT
Statistics
Matches: 69, Mismatches: 6, Indels: 19
0.73 0.06 0.20
Matches are distributed among these distances:
20 18 0.26
21 21 0.30
22 10 0.14
23 1 0.01
24 2 0.03
25 8 0.12
26 4 0.06
27 5 0.07
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (20 bp):
AATAAAATATTATTTTTTAA
Found at i:14761762 original size:42 final size:43
Alignment explanation
Indices: 14761716--14761798 Score: 118
Period size: 42 Copynumber: 1.9 Consensus size: 43
14761706 ATTGAAATTA
14761716 ATAAAATATT-TATTTTT-TA-AAATATAAAATAATATTTTTAAC
1 ATAAAATATTAT-TTTTTATATAAATATAAAAT-ATATTTTTAAC
14761758 ATAAAATATTATTTTTTAATATAAATATAAAATATATTTTT
1 ATAAAATATTATTTTTT-ATATAAATATAAAATATATTTTT
14761799 TAAAATATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
42 15 0.41
43 1 0.03
44 10 0.27
45 11 0.30
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (43 bp):
ATAAAATATTATTTTTTATATAAATATAAAATATATTTTTAAC
Found at i:14761763 original size:19 final size:20
Alignment explanation
Indices: 14761716--14761787 Score: 65
Period size: 19 Copynumber: 3.5 Consensus size: 20
14761706 ATTGAAATTA
* *
14761716 ATAAAATATTTATTTTTTAAAAT
1 ATAAAATA-ATATTTTTT--AAC
14761739 ATAAAATAATA-TTTTTAAC
1 ATAAAATAATATTTTTTAAC
* *
14761758 ATAAAATATTATTTTTTAAT
1 ATAAAATAATATTTTTTAAC
14761778 ATAAATATAA
1 ATAAA-ATAA
14761788 AATATATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
19 12 0.29
20 12 0.29
21 8 0.19
22 2 0.05
23 8 0.19
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (20 bp):
ATAAAATAATATTTTTTAAC
Found at i:14761799 original size:45 final size:43
Alignment explanation
Indices: 14761716--14761820 Score: 117
Period size: 47 Copynumber: 2.4 Consensus size: 43
14761706 ATTGAAATTA
14761716 ATAAAATATT-TATTTTTTAAAATATAAAATAATATTTTT-AAC
1 ATAAAATATTAT-TTTTTTAAAATATAAAATAATATTTTTAAAC
*
14761758 ATAAAATATTATTTTTTAATATAAATATAAAAT-ATATTTTTTAAAAT
1 ATAAAATATTATTTTTT--TA-AAATATAAAATAATA-TTTTT-AAAC
*
14761805 ATAAAATAGTATTTTT
1 ATAAAATATTATTTTT
14761821 ACCTGAGGTT
Statistics
Matches: 54, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
42 15 0.28
43 1 0.02
44 5 0.09
45 16 0.30
47 17 0.31
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.49
Consensus pattern (43 bp):
ATAAAATATTATTTTTTTAAAATATAAAATAATATTTTTAAAC
Found at i:14761821 original size:21 final size:20
Alignment explanation
Indices: 14761729--14761821 Score: 89
Period size: 21 Copynumber: 4.3 Consensus size: 20
14761719 AAATATTTAT
14761729 TTTTTAAAATATAAAATAATA
1 TTTTTAAAATATAAAAT-ATA
* *
14761750 TTTTTAACATA-AAATATTATT
1 TTTTTAAAATATAAA-A-TATA
14761771 TTTTAATATAAATATAAAATATA
1 TTTT--TA-AAATATAAAATATA
14761794 TTTTTTAAAATATAAAATAGTA
1 -TTTTTAAAATATAAAATA-TA
14761816 TTTTTA
1 TTTTTA
14761822 CCTGAGGTTG
Statistics
Matches: 60, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
20 3 0.05
21 35 0.58
22 5 0.08
23 5 0.08
24 9 0.15
25 3 0.05
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (20 bp):
TTTTTAAAATATAAAATATA
Found at i:14768002 original size:21 final size:20
Alignment explanation
Indices: 14767952--14768004 Score: 52
Period size: 21 Copynumber: 2.6 Consensus size: 20
14767942 AAATGATAAC
**
14767952 GATAAAATTAGTTATTTAAT
1 GATAAAATTAAATATTTAAT
* * *
14767972 AATGAGATTAAATATTGTAAT
1 GATAAAATTAAATATT-TAAT
14767993 GATAAAATTAAA
1 GATAAAATTAAA
14768005 ATCAATAATA
Statistics
Matches: 24, Mismatches: 8, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (20 bp):
GATAAAATTAAATATTTAAT
Found at i:14769995 original size:14 final size:16
Alignment explanation
Indices: 14769962--14769998 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
14769952 ATTAAATAAA
14769962 TTTAAATTAGAACTTT
1 TTTAAATTAGAACTTT
*
14769978 TTTAATTTA-AAC-TT
1 TTTAAATTAGAACTTT
14769992 TTTAAAT
1 TTTAAAT
14769999 AATAAGGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
14 8 0.42
15 3 0.16
16 8 0.42
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (16 bp):
TTTAAATTAGAACTTT
Found at i:14773860 original size:16 final size:17
Alignment explanation
Indices: 14773834--14773871 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
14773824 ATATTAATTT
*
14773834 TTAATATAAATCTAAAA
1 TTAATATAAATATAAAA
*
14773851 TTAA-ATAAATATATAA
1 TTAATATAAATATAAAA
14773867 TTAAT
1 TTAAT
14773872 TAATTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
TTAATATAAATATAAAA
Found at i:14775323 original size:22 final size:22
Alignment explanation
Indices: 14775298--14775344 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
14775288 TTTAGAATGA
*
14775298 TTTGAATTTTTTTTTTAATTTT
1 TTTGAATTTTTTTTTTAAATTT
**
14775320 TTTGGTTTTTTTTTTTAAATTT
1 TTTGAATTTTTTTTTTAAATTT
14775342 TTT
1 TTT
14775345 AGGTATTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (22 bp):
TTTGAATTTTTTTTTTAAATTT
Found at i:14775330 original size:23 final size:23
Alignment explanation
Indices: 14775303--14775353 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
14775293 AATGATTTGA
* *
14775303 ATTTTTTTTTTAATTTTTTTGGT
1 ATTTTTTTTTAAATTTTTTAGGT
*
14775326 TTTTTTTTTTAAATTTTTTAGGT
1 ATTTTTTTTTAAATTTTTTAGGT
14775349 ATTTT
1 ATTTT
14775354 GAAGAACTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (23 bp):
ATTTTTTTTTAAATTTTTTAGGT
Found at i:14779855 original size:15 final size:15
Alignment explanation
Indices: 14779832--14779927 Score: 96
Period size: 15 Copynumber: 6.7 Consensus size: 15
14779822 AGAGTTTGAG
*
14779832 AAATATATTTATGAT
1 AAATTTATTTATGAT
14779847 AAATTTATTT-TG--
1 AAATTTATTTATGAT
*
14779859 ACATTTATTTATGAT
1 AAATTTATTTATGAT
*
14779874 AAATTTATTTATGAG
1 AAATTTATTTATGAT
*
14779889 AAATATAATTT-TG--
1 AAAT-TTATTTATGAT
*
14779902 ACATTTATTTATGAT
1 AAATTTATTTATGAT
14779917 AAATTTATTTA
1 AAATTTATTTA
14779928 ATACATCATG
Statistics
Matches: 66, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
12 14 0.21
13 7 0.11
14 2 0.03
15 38 0.58
16 5 0.08
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (15 bp):
AAATTTATTTATGAT
Found at i:14779904 original size:43 final size:42
Alignment explanation
Indices: 14779832--14779927 Score: 156
Period size: 43 Copynumber: 2.3 Consensus size: 42
14779822 AGAGTTTGAG
* * *
14779832 AAATATATTTATGATAAATTTATTTTGACATTTATTTATGAT
1 AAATTTATTTATGAGAAATTAATTTTGACATTTATTTATGAT
14779874 AAATTTATTTATGAGAAATATAATTTTGACATTTATTTATGAT
1 AAATTTATTTATGAGAAAT-TAATTTTGACATTTATTTATGAT
14779917 AAATTTATTTA
1 AAATTTATTTA
14779928 ATACATCATG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
42 17 0.34
43 33 0.66
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (42 bp):
AAATTTATTTATGAGAAATTAATTTTGACATTTATTTATGAT
Found at i:14779933 original size:28 final size:28
Alignment explanation
Indices: 14779876--14779933 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
14779866 TTTATGATAA
*
14779876 ATTTATTTATGAGAAATATAATTT--TGAC
1 ATTTATTTATGAGAAAT-TTATTTAAT-AC
*
14779904 ATTTATTTATGATAAATTTATTTAATAC
1 ATTTATTTATGAGAAATTTATTTAATAC
14779932 AT
1 AT
14779934 CATGATAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
27 5 0.19
28 20 0.77
29 1 0.04
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.50
Consensus pattern (28 bp):
ATTTATTTATGAGAAATTTATTTAATAC
Found at i:14780299 original size:3 final size:3
Alignment explanation
Indices: 14780291--14780326 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
14780281 ATTATCCTAT
14780291 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14780327 AAAGGCTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14780846 original size:26 final size:26
Alignment explanation
Indices: 14780817--14780867 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14780807 TATAAACAAA
*
14780817 ATATCATATATATTTGTATAATACAC
1 ATATCATATATATTTATATAATACAC
** *
14780843 ATATTTTATATATTTATTTAATACA
1 ATATCATATATATTTATATAATACA
14780868 TGTATTTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.49
Consensus pattern (26 bp):
ATATCATATATATTTATATAATACAC
Found at i:14780873 original size:26 final size:26
Alignment explanation
Indices: 14780823--14780876 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
14780813 CAAAATATCA
*
14780823 TATATATTTGTATAATACACATATTT
1 TATATATTTATATAATACACATATTT
* **
14780849 TATATATTTATTTAATACATGTATTT
1 TATATATTTATATAATACACATATTT
14780875 TA
1 TA
14780877 AAATTCTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.06, G:0.04, T:0.54
Consensus pattern (26 bp):
TATATATTTATATAATACACATATTT
Found at i:14781397 original size:22 final size:23
Alignment explanation
Indices: 14781346--14781389 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
14781336 AAAATTTTAA
* *
14781346 ATAAAATTTTTTATGTGAAATTC
1 ATAAAATTTTTTATGTAAAAATC
14781369 ATAAAATTTTTTAT-TAAAAAT
1 ATAAAATTTTTTATGTAAAAAT
14781390 GATTAAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (23 bp):
ATAAAATTTTTTATGTAAAAATC
Found at i:14781513 original size:24 final size:25
Alignment explanation
Indices: 14781467--14781514 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
14781457 TAAAAATTAA
14781467 TAAAATTTTATATAAACAATTTTAG
1 TAAAATTTTATATAAACAATTTTAG
*
14781492 TAAAATTATTA-AT-AACATTTTTA
1 TAAAATT-TTATATAAACAATTTTA
14781515 CCGTTAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 9 0.43
25 9 0.43
26 3 0.14
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (25 bp):
TAAAATTTTATATAAACAATTTTAG
Found at i:14782208 original size:26 final size:26
Alignment explanation
Indices: 14782157--14782206 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
14782147 TTTATACTCG
*
14782157 TTTAATAAAAGTATTTTATATATTTA
1 TTTAATAAAAGTATTTTAAATATTTA
* *
14782183 TTTAATACATGTATTTTAAA-ATTT
1 TTTAATAAAAGTATTTTAAATATTT
14782207 TAATATAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (26 bp):
TTTAATAAAAGTATTTTAAATATTTA
Found at i:14785620 original size:2 final size:2
Alignment explanation
Indices: 14785613--14785651 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
14785603 TCTTGTAAGT
14785613 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
14785652 TAGATCCATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:14793432 original size:2 final size:2
Alignment explanation
Indices: 14793425--14793455 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
14793415 GTTCTTTTCT
14793425 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14793456 TATTTTAGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14797750 original size:24 final size:25
Alignment explanation
Indices: 14797708--14797762 Score: 80
Period size: 24 Copynumber: 2.3 Consensus size: 25
14797698 TGATTATTAT
14797708 AATTAA-AAATTTAATAATTT-ATC
1 AATTAATAAATTTAATAATTTAATC
14797731 ATATTAATAAATTTAA-AATTTAATC
1 A-ATTAATAAATTTAATAATTTAATC
14797756 AATTAAT
1 AATTAAT
14797763 TTATATAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
23 1 0.03
24 16 0.55
25 12 0.41
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (25 bp):
AATTAATAAATTTAATAATTTAATC
Found at i:14797753 original size:16 final size:15
Alignment explanation
Indices: 14797706--14797759 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 15
14797696 TTTGATTATT
*
14797706 ATAATTAAAAATTTA
1 ATAATTTAAAATTTA
**
14797721 ATAATTTATCATATTA
1 ATAATTTAAAAT-TTA
14797737 ATAAATTTAAAATTTA
1 AT-AATTTAAAATTTA
14797753 ATCAATT
1 AT-AATT
14797760 AATTTATATA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
15 9 0.29
16 14 0.45
17 8 0.26
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATTTAAAATTTA
Found at i:14801774 original size:20 final size:20
Alignment explanation
Indices: 14801749--14801786 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14801739 TAAAATTATT
14801749 TTTAAAAATTAATATTTAAA
1 TTTAAAAATTAATATTTAAA
* *
14801769 TTTAAAATTTAATTTTTA
1 TTTAAAAATTAATATTTA
14801787 GTATGTGTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTAAAAATTAATATTTAAA
Found at i:14802071 original size:2 final size:2
Alignment explanation
Indices: 14802064--14802089 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14802054 ACTCTCCTCC
14802064 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
14802090 AAATACCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14803088 original size:22 final size:24
Alignment explanation
Indices: 14803063--14803111 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
14803053 AACATGTAAA
*
14803063 AATAAA-TTTGATT-TTTATATTC
1 AATAAAGTTTAATTATTTATATTC
14803085 AATAAAGGTTTAATTATTTATATTC
1 AATAAA-GTTTAATTATTTATATTC
14803110 AA
1 AA
14803112 ATTCGAACTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 6 0.26
24 6 0.26
25 11 0.48
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.49
Consensus pattern (24 bp):
AATAAAGTTTAATTATTTATATTC
Found at i:14803166 original size:10 final size:10
Alignment explanation
Indices: 14803142--14803171 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
14803132 TATTTTATTC
14803142 ATTAAAATA-
1 ATTAAAATAT
14803151 ATTAAAATAT
1 ATTAAAATAT
14803161 ATTAAAATAT
1 ATTAAAATAT
14803171 A
1 A
14803172 AAAACTCGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATTAAAATAT
Found at i:14811756 original size:67 final size:65
Alignment explanation
Indices: 14811668--14811794 Score: 227
Period size: 67 Copynumber: 1.9 Consensus size: 65
14811658 TGATTAGTAA
14811668 AAATAATTAAGAGATTTACTATGAATTTATATCTAAGAAAAAAAATTAAATAAATATATTTTAAT
1 AAATAATTAAGAGATTTACTATGAATTTATATCTAAG-AAAAAAATTAAATAAAT-TATTTTAAT
14811733 TT
64 TT
*
14811735 AAATAATTGAGAGATTTACTATGAATTTATATCTAAGAAAAAAATTAAATAAATTATTTT
1 AAATAATTAAGAGATTTACTATGAATTTATATCTAAGAAAAAAATTAAATAAATTATTTT
14811795 TCTTTTTATT
Statistics
Matches: 59, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
65 6 0.10
66 17 0.29
67 36 0.61
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (65 bp):
AAATAATTAAGAGATTTACTATGAATTTATATCTAAGAAAAAAATTAAATAAATTATTTTAATTT
Found at i:14813498 original size:2 final size:2
Alignment explanation
Indices: 14813491--14813523 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
14813481 CATCCAAGAC
14813491 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14813524 ATGTTCACTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14820173 original size:33 final size:32
Alignment explanation
Indices: 14820134--14820238 Score: 102
Period size: 33 Copynumber: 3.0 Consensus size: 32
14820124 TATACGTGAT
*
14820134 AATTTATATATTTATATTATATAAAATATTAAA
1 AATTTATATATTTATATCATATAAAATA-TAAA
***
14820167 AATTTATATATTTATATCATATTTTATATAAA
1 AATTTATATATTTATATCATATAAAATATAAA
14820199 AATTATATATTATAATTCATATCAATATAAAATTATAAA
1 AATT-TATA-TAT--TT-ATATC-ATATAAAA-TATAAA
14820238 A
1 A
14820239 TATATTTTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
32 8 0.14
33 28 0.48
34 3 0.05
36 2 0.03
37 5 0.09
38 5 0.09
39 7 0.12
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (32 bp):
AATTTATATATTTATATCATATAAAATATAAA
Found at i:14820281 original size:22 final size:19
Alignment explanation
Indices: 14820242--14820299 Score: 64
Period size: 22 Copynumber: 2.9 Consensus size: 19
14820232 TATAAAATAT
14820242 ATTTTTTAAATTTTATTAA
1 ATTTTTTAAATTTTATTAA
14820261 ATTTATTTATAATCTTTATTAA
1 ATTT-TTTA-AAT-TTTATTAA
* *
14820283 A-ATTTTAAATTATATTA
1 ATTTTTTAAATTTTATTA
14820300 TTTTTATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
18 6 0.18
19 7 0.21
20 8 0.24
21 4 0.12
22 9 0.26
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.59
Consensus pattern (19 bp):
ATTTTTTAAATTTTATTAA
Found at i:14820311 original size:23 final size:23
Alignment explanation
Indices: 14820284--14820332 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
14820274 CTTTATTAAA
14820284 ATTTTAAATTATATTATTTTTAT
1 ATTTTAAATTATATTATTTTTAT
* * * *
14820307 ATTTTTATTTGTTTTATTTTTAT
1 ATTTTAAATTATATTATTTTTAT
14820330 ATT
1 ATT
14820333 ATATCATTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (23 bp):
ATTTTAAATTATATTATTTTTAT
Found at i:14830166 original size:30 final size:33
Alignment explanation
Indices: 14830132--14830198 Score: 88
Period size: 31 Copynumber: 2.1 Consensus size: 33
14830122 GCGTTGGATT
*
14830132 ATAA-TTTAAATGA-TTAAAAT-TTAATTTTT-G
1 ATAATTTTAAAT-ATTTAAAATGATAATTTTTAG
14830162 ATAATTTTAAATATTTAAAATGATAATTTTTAG
1 ATAATTTTAAATATTTAAAATGATAATTTTTAG
14830195 ATAA
1 ATAA
14830199 AAAAATCCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
30 5 0.16
31 14 0.44
32 8 0.25
33 5 0.16
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (33 bp):
ATAATTTTAAATATTTAAAATGATAATTTTTAG
Found at i:14830676 original size:15 final size:16
Alignment explanation
Indices: 14830656--14830688 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
14830646 TGATGAATAA
14830656 TTAAAAATTAAT-ATT
1 TTAAAAATTAATAATT
14830671 TTAAAAATTAATAATT
1 TTAAAAATTAATAATT
14830687 TT
1 TT
14830689 GATTAAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TTAAAAATTAATAATT
Found at i:14832803 original size:17 final size:18
Alignment explanation
Indices: 14832776--14832809 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
14832766 TTTCATGCCA
14832776 CATTAAAATTTTTTTTTT
1 CATTAAAATTTTTTTTTT
14832794 CATT-AAATTTTTTTTT
1 CATTAAAATTTTTTTTT
14832810 AAAAAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (18 bp):
CATTAAAATTTTTTTTTT
Found at i:14833681 original size:23 final size:24
Alignment explanation
Indices: 14833654--14833714 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 24
14833644 GTGAAAAAAA
14833654 TTAAAAATATTATAAT-TTAAATT
1 TTAAAAATATTATAATGTTAAATT
** *
14833677 TTAAATTTATTA-AATGTTATATT
1 TTAAAAATATTATAATGTTAAATT
14833700 TTAAAAATAGTTATA
1 TTAAAAATA-TTATA
14833715 TAAATTAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
22 3 0.10
23 23 0.77
24 3 0.10
25 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (24 bp):
TTAAAAATATTATAATGTTAAATT
Found at i:14854803 original size:38 final size:39
Alignment explanation
Indices: 14854729--14854804 Score: 102
Period size: 38 Copynumber: 2.0 Consensus size: 39
14854719 TGTATTTGTA
*
14854729 TTATATAAAATATTAAATTTTATATATTTATATAATATT
1 TTATATAAAATATTAAATATTATATATTTATATAATATT
**
14854768 TTATATAAAA-ATTATGTATTATA-ATTTATATTAATAT
1 TTATATAAAATATTAAATATTATATATTTATA-TAATAT
14854805 AAAAATATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
37 7 0.21
38 16 0.48
39 10 0.30
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (39 bp):
TTATATAAAATATTAAATATTATATATTTATATAATATT
Found at i:14855340 original size:17 final size:17
Alignment explanation
Indices: 14855322--14855355 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14855312 TATTTGATAT
14855322 AAAATTAATTGATTAATA
1 AAAATT-ATTGATTAATA
*
14855340 AAAATTATTTATTAAT
1 AAAATTATTGATTAAT
14855356 TAACAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
AAAATTATTGATTAATA
Found at i:14855975 original size:15 final size:14
Alignment explanation
Indices: 14855956--14856021 Score: 50
Period size: 15 Copynumber: 4.7 Consensus size: 14
14855946 TTTTAAAGTT
14855956 TATAATTTTTCTTA
1 TATAATTTTTCTTA
14855970 TAATAA-TTTT-TTA
1 T-ATAATTTTTCTTA
**
14855983 T-TAATTTTAAAGTT-
1 TATAATTTT--TCTTA
14855997 TATAATTTTTCTTA
1 TATAATTTTTCTTA
14856011 TAATAATTTTT
1 T-ATAATTTTT
14856022 TATTATATTG
Statistics
Matches: 41, Mismatches: 3, Indels: 15
0.69 0.05 0.25
Matches are distributed among these distances:
11 3 0.07
12 3 0.07
13 6 0.15
14 7 0.17
15 22 0.54
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (14 bp):
TATAATTTTTCTTA
Found at i:14855975 original size:41 final size:41
Alignment explanation
Indices: 14855930--14856026 Score: 185
Period size: 41 Copynumber: 2.4 Consensus size: 41
14855920 AAACTAATAA
*
14855930 AATAAATTTTTATTAATTTTAAAGTTTATAATTTTTCTTAT
1 AATAATTTTTTATTAATTTTAAAGTTTATAATTTTTCTTAT
14855971 AATAATTTTTTATTAATTTTAAAGTTTATAATTTTTCTTAT
1 AATAATTTTTTATTAATTTTAAAGTTTATAATTTTTCTTAT
14856012 AATAATTTTTTATTA
1 AATAATTTTTTATTA
14856027 TATTGATTAA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 55 1.00
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (41 bp):
AATAATTTTTTATTAATTTTAAAGTTTATAATTTTTCTTAT
Found at i:14859962 original size:6 final size:6
Alignment explanation
Indices: 14859951--14859979 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
14859941 TCTCAGACAG
14859951 CAGCAC CAGCAC CAGCAC CAGCAC CAGCA
1 CAGCAC CAGCAC CAGCAC CAGCAC CAGCA
14859980 GCGACTGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.48, G:0.17, T:0.00
Consensus pattern (6 bp):
CAGCAC
Found at i:14864233 original size:25 final size:25
Alignment explanation
Indices: 14864199--14864253 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
14864189 AGAACGCTTA
* *
14864199 GCATCTGGCCCTACAGTATGGATCT
1 GCATTTGGCCCTACAGTATAGATCT
*
14864224 GCATTTGGCCCTACAGTGTAGATCT
1 GCATTTGGCCCTACAGTATAGATCT
14864249 GCATT
1 GCATT
14864254 ATCTGACTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.20, C:0.25, G:0.24, T:0.31
Consensus pattern (25 bp):
GCATTTGGCCCTACAGTATAGATCT
Found at i:14867916 original size:57 final size:56
Alignment explanation
Indices: 14867814--14867924 Score: 177
Period size: 57 Copynumber: 2.0 Consensus size: 56
14867804 GTATGTATAT
*
14867814 GAACATCAGTATATAAATATATATACTGGTAAAGAAGTACAGAAAAAAAAGGCTTAC
1 GAACATCAATATATAAATATATATACTGGTAAAGAAGTACAG-AAAAAAAGGCTTAC
* **
14867871 GAACCTCAATATATAAATATATATACTGGTAAAGAAGTATGGAAAAAAAGGCTT
1 GAACATCAATATATAAATATATATACTGGTAAAGAAGTACAGAAAAAAAGGCTT
14867925 GAGGTTATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
56 12 0.24
57 38 0.76
ACGTcount: A:0.50, C:0.10, G:0.16, T:0.24
Consensus pattern (56 bp):
GAACATCAATATATAAATATATATACTGGTAAAGAAGTACAGAAAAAAAGGCTTAC
Found at i:14868325 original size:8 final size:8
Alignment explanation
Indices: 14868314--14868338 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
14868304 GTTTGCTTCT
14868314 TTGATTCA
1 TTGATTCA
14868322 TTGATTCA
1 TTGATTCA
14868330 TTGATTCA
1 TTGATTCA
14868338 T
1 T
14868339 CAACATCAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.52
Consensus pattern (8 bp):
TTGATTCA
Found at i:14869209 original size:27 final size:27
Alignment explanation
Indices: 14869179--14869232 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
14869169 GATTATAACC
14869179 ACAAGTTTGATCATTCTATATATTTAG
1 ACAAGTTTGATCATTCTATATATTTAG
*
14869206 ACAAGTTTGATCATTTTATATATTTAG
1 ACAAGTTTGATCATTCTATATATTTAG
14869233 GACTGGCCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.46
Consensus pattern (27 bp):
ACAAGTTTGATCATTCTATATATTTAG
Found at i:14872053 original size:17 final size:18
Alignment explanation
Indices: 14872033--14872068 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
14872023 TATGAAGATT
14872033 ATATGAATA-TTTAAATA
1 ATATGAATAGTTTAAATA
14872050 ATATGAATAGTTTAAATA
1 ATATGAATAGTTTAAATA
14872068 A
1 A
14872069 AAATATAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (18 bp):
ATATGAATAGTTTAAATA
Found at i:14873016 original size:2 final size:2
Alignment explanation
Indices: 14873011--14873035 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14873001 GAGAGGAAAT
14873011 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
14873036 CTGTGTGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14873042 original size:2 final size:2
Alignment explanation
Indices: 14873037--14873061 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14873027 TATATATATC
14873037 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
14873062 TGGAAAGGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:14875347 original size:12 final size:12
Alignment explanation
Indices: 14875330--14875358 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
14875320 TTTATCAGAT
14875330 TTAAATTTTTTA
1 TTAAATTTTTTA
14875342 TTAAA-TTTTTA
1 TTAAATTTTTTA
14875353 TTAAAT
1 TTAAAT
14875359 CATCTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTAAATTTTTTA
Found at i:14884313 original size:7 final size:7
Alignment explanation
Indices: 14884301--14884327 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
14884291 GTTTTTGTTC
14884301 TAAAAAT
1 TAAAAAT
14884308 TAAAAAT
1 TAAAAAT
14884315 TAAAAAT
1 TAAAAAT
14884322 TAAAAA
1 TAAAAA
14884328 CAAAATTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
TAAAAAT
Found at i:14885018 original size:82 final size:82
Alignment explanation
Indices: 14884932--14885239 Score: 325
Period size: 82 Copynumber: 3.7 Consensus size: 82
14884922 CAAGTGATAC
* * * *
14884932 CGATATATTTATTTTTAAAAATTTTAGATCGAGTTTGGATATCAACATCAATTTTAGTATTCTTT
1 CGATATATTTATCTCTAAACATTTTAGATCGAGTTTGGATATCAACATCAATTTTAATATTCTTT
*
14884997 TTGTGAACAATTGGTAT
66 TAGTGAACAATTGGTAT
* ** * * *
14885014 CGATATATTTATCTTTAAACGCTTTAGATTGTGTTTGCATATCAACATCAATTTTAATATTCTTT
1 CGATATATTTATCTCTAAACATTTTAGATCGAGTTTGGATATCAACATCAATTTTAATATTCTTT
* *
14885079 TCGT-AAGTAATTGGTAT
66 TAGTGAA-CAATTGGTAT
** * *
14885096 CGATATATTTATCTCTAAATCA-GCTGGATCGAGTTTGGATATCAACATCAATTTTAAAATACTC
1 CGATATATTTATCTCTAAA-CATTTTAGATCGAGTTTGGATATCAACATCAATTTT--AATATTC
* * *
14885160 TTTCAGTGATCAATTGATAT
63 TTTTAGTGAACAATTGGTAT
* * * *
14885180 TGATATATATTATCTCGAAACATTTTGAAAT-AAGTTTGGATATCAACATCAATTTTAATA
1 CGATATAT-TTATCTCTAAACATTTT-AGATCGAGTTTGGATATCAACATCAATTTTAATA
14885240 ATATAACCGA
Statistics
Matches: 187, Mismatches: 31, Indels: 15
0.80 0.13 0.06
Matches are distributed among these distances:
81 2 0.01
82 114 0.61
83 5 0.03
84 28 0.15
85 36 0.19
86 2 0.01
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (82 bp):
CGATATATTTATCTCTAAACATTTTAGATCGAGTTTGGATATCAACATCAATTTTAATATTCTTT
TAGTGAACAATTGGTAT
Found at i:14885406 original size:15 final size:17
Alignment explanation
Indices: 14885363--14885407 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
14885353 AATAAAATAT
14885363 TTAATATGATATTGAAA
1 TTAATATGATATTGAAA
*
14885380 TTATAAAT-ATATT-AAA
1 TTA-ATATGATATTGAAA
14885396 -TAATATGATATT
1 TTAATATGATATT
14885408 CACTCTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
14 3 0.12
15 7 0.29
16 3 0.12
17 8 0.33
18 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (17 bp):
TTAATATGATATTGAAA
Found at i:14885529 original size:29 final size:31
Alignment explanation
Indices: 14885487--14885555 Score: 106
Period size: 29 Copynumber: 2.3 Consensus size: 31
14885477 TAATAATTTA
* *
14885487 ATAATTTAAGTATTATATT-AATTTTTTTTT
1 ATAATTTAAGTATTATATTAAATATTTTATT
14885517 A-AATTTAAGTATTATATTAAATATTTTATT
1 ATAATTTAAGTATTATATTAAATATTTTATT
14885547 ATAATTTAA
1 ATAATTTAA
14885556 TGGCCGAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
29 17 0.49
30 11 0.31
31 7 0.20
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (31 bp):
ATAATTTAAGTATTATATTAAATATTTTATT
Found at i:14891019 original size:28 final size:28
Alignment explanation
Indices: 14890959--14891021 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
14890949 TTTAATTTTA
* *
14890959 AAATAATTTTTTATTTAAATACTAATTT
1 AAATAATTTTTTATTTAAATAATAAATT
*
14890987 AAATAATTTTTTATTTTAATAAATAAATT
1 AAATAATTTTTTATTTAAAT-AATAAATT
14891016 -AATAAT
1 AAATAAT
14891022 ATTTAATCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 25 0.81
29 6 0.19
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (28 bp):
AAATAATTTTTTATTTAAATAATAAATT
Found at i:14894243 original size:16 final size:16
Alignment explanation
Indices: 14894211--14894269 Score: 52
Period size: 16 Copynumber: 3.7 Consensus size: 16
14894201 AACTAATTTA
*
14894211 ATAATTTTAATATAAT
1 ATAATTTTAATAAAAT
14894227 ATAATATTT-ATAAAAT
1 ATAAT-TTTAATAAAAT
*
14894243 AT-TTTTTAATATAAAT
1 ATAATTTTAATA-AAAT
14894259 -TATATTTTAAT
1 ATA-ATTTTAAT
14894270 TATTTATAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
14 3 0.09
15 5 0.14
16 17 0.49
17 10 0.29
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
ATAATTTTAATAAAAT
Found at i:14894255 original size:17 final size:17
Alignment explanation
Indices: 14894210--14894269 Score: 56
Period size: 17 Copynumber: 3.8 Consensus size: 17
14894200 AAACTAATTT
14894210 AATA-ATTTTAATATAA
1 AATATATTTTAATATAA
* *
14894226 TATA-ATATT--TATAA
1 AATATATTTTAATATAA
*
14894240 AATATTTTTTAATATAA
1 AATATATTTTAATATAA
*
14894257 ATTATATTTTAAT
1 AATATATTTTAAT
14894270 TATTTATAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
14 8 0.24
15 3 0.09
16 7 0.21
17 16 0.47
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
AATATATTTTAATATAA
Found at i:14894285 original size:21 final size:21
Alignment explanation
Indices: 14894207--14894285 Score: 64
Period size: 19 Copynumber: 4.0 Consensus size: 21
14894197 TTAAAACTAA
* *
14894207 TTTAATAATTT-T-AATATAA
1 TTTAATTATTTATAAATATAT
*
14894226 TATAA-TATTTATAAA-ATAT
1 TTTAATTATTTATAAATATAT
*
14894245 TTT--TTA-ATATAAATTATAT
1 TTTAATTATTTATAAA-TATAT
14894264 TTTAATTATTTATAAATATAT
1 TTTAATTATTTATAAATATAT
14894285 T
1 T
14894286 ATTTTTATTA
Statistics
Matches: 46, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
17 6 0.13
18 6 0.13
19 17 0.37
20 2 0.04
21 9 0.20
22 6 0.13
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
TTTAATTATTTATAAATATAT
Found at i:14894285 original size:40 final size:40
Alignment explanation
Indices: 14894231--14894309 Score: 117
Period size: 41 Copynumber: 2.0 Consensus size: 40
14894221 TATAATATAA
14894231 TATTTATAAAATATT-TTTTAATATAAATT-ATATTTTAAT
1 TATTTATAAAATATTATTTTAAT-TAAATTAATATTTTAAT
*
14894270 TATTTATAAATATATTATTTTTATTAAATTAATATTTTAA
1 TATTTATAAA-ATATTATTTTAATTAAATTAATATTTTAA
14894310 ATTAAAATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
39 10 0.28
40 11 0.31
41 15 0.42
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (40 bp):
TATTTATAAAATATTATTTTAATTAAATTAATATTTTAAT
Found at i:14894295 original size:24 final size:22
Alignment explanation
Indices: 14894252--14894309 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
14894242 TATTTTTTAA
14894252 TATAAATTATATTTTAATTATT
1 TATAAATTATATTTTAATTATT
14894274 TATAAA-TATA--TT-ATT-TT
1 TATAAATTATATTTTAATTATT
14894291 TATTAAATTAATATTTTAA
1 TA-TAAATT-ATATTTTAA
14894310 ATTAAAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 11
0.73 0.00 0.27
Matches are distributed among these distances:
17 4 0.13
18 7 0.23
19 3 0.10
20 3 0.10
21 4 0.13
22 8 0.27
23 1 0.03
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TATAAATTATATTTTAATTATT
Found at i:14894355 original size:42 final size:41
Alignment explanation
Indices: 14894275--14894370 Score: 99
Period size: 41 Copynumber: 2.3 Consensus size: 41
14894265 TTAATTATTT
* * *
14894275 ATAAAT-ATATTATTTTTATTAAATTAATATTTTAAATTAAA
1 ATAAATAATAATAATTTTATTAAATTAATATTATAAATT-AA
**
14894316 ATATTTAATAATAATTTTATT-AATATAATA-TATATAATTAA
1 ATAAATAATAATAATTTTATTAAAT-TAATATTATA-AATTAA
14894357 ATAAATAATAATAA
1 ATAAATAATAATAA
14894371 AAATATTTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
41 24 0.53
42 21 0.47
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (41 bp):
ATAAATAATAATAATTTTATTAAATTAATATTATAAATTAA
Found at i:14899152 original size:22 final size:22
Alignment explanation
Indices: 14899093--14899152 Score: 56
Period size: 22 Copynumber: 2.8 Consensus size: 22
14899083 AGTAATAGAT
14899093 TTAATATTT-AAATT-TAATTAA
1 TTAAT-TTTAAAATTATAATTAA
*
14899114 -TAATTTATTATAA-TATAATTAA
1 TTAA-TT-TTAAAATTATAATTAA
14899136 TTAATTTTAAAATTATA
1 TTAATTTTAAAATTATA
14899153 TAAAATTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 11
0.70 0.05 0.25
Matches are distributed among these distances:
20 4 0.13
21 9 0.29
22 15 0.48
23 3 0.10
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TTAATTTTAAAATTATAATTAA
Found at i:14899586 original size:12 final size:12
Alignment explanation
Indices: 14899571--14899613 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
14899561 AAACTCAAAT
*
14899571 TTAAATATATAA
1 TTAAATATAAAA
*
14899583 TTAAATTTAAAA
1 TTAAATATAAAA
*
14899595 TCAAATATAAAAA
1 TTAAATAT-AAAA
14899608 TTAAAT
1 TTAAAT
14899614 TTATATAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 16 0.64
13 9 0.36
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (12 bp):
TTAAATATAAAA
Found at i:14899627 original size:20 final size:20
Alignment explanation
Indices: 14899567--14899629 Score: 58
Period size: 19 Copynumber: 3.2 Consensus size: 20
14899557 ATTTAAACTC
*
14899567 AAATTTAAA-TATATAATTA
1 AAATTAAAATTATATAATTA
* * * *
14899586 AATTTAAAATCAAAT-ATAA
1 AAATTAAAATTATATAATTA
*
14899605 AAATTAAATTTATATAATTA
1 AAATTAAAATTATATAATTA
14899625 AAATT
1 AAATT
14899630 TTATTTTAAA
Statistics
Matches: 32, Mismatches: 10, Indels: 3
0.71 0.22 0.07
Matches are distributed among these distances:
19 21 0.66
20 11 0.34
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
AAATTAAAATTATATAATTA
Found at i:14899688 original size:25 final size:26
Alignment explanation
Indices: 14899651--14899700 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
14899641 CAAACTCAAA
14899651 TTTAAAAATTAAATTTTAA-TTAAAT
1 TTTAAAAATTAAATTTTAAGTTAAAT
14899676 TTTAAACAA-TAAATTTTAAGTTAAA
1 TTTAAA-AATTAAATTTTAAGTTAAA
14899701 CTTTCATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (26 bp):
TTTAAAAATTAAATTTTAAGTTAAAT
Found at i:14906427 original size:38 final size:37
Alignment explanation
Indices: 14906385--14906472 Score: 97
Period size: 40 Copynumber: 2.3 Consensus size: 37
14906375 TAATTTATCA
*
14906385 TAAAATAATTTGATATAATAATATT-TATTTATAATATT
1 TAAAATAATTTGATATAATAATATTATATTTAT-AGA-T
** *
14906423 TAAAATAATTTATGATATTTTAATTTTATATTTATAGAT
1 TAAAATAA-TT-TGATATAATAATATTATATTTATAGAT
14906462 TAAAATAATTT
1 TAAAATAATTT
14906473 TTTTACATGT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
37 1 0.02
38 10 0.23
39 11 0.26
40 14 0.33
41 7 0.16
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.51
Consensus pattern (37 bp):
TAAAATAATTTGATATAATAATATTATATTTATAGAT
Found at i:14912541 original size:26 final size:24
Alignment explanation
Indices: 14912500--14912554 Score: 58
Period size: 26 Copynumber: 2.2 Consensus size: 24
14912490 AATTAAAATT
* *
14912500 AATATATTTTT-TAAAATATATATA
1 AATATATTTTTAAAAAAT-TACATA
14912524 AATATATTTATTAAAAAAATTACATA
1 AATATATTT-TT-AAAAAATTACATA
14912550 AATAT
1 AATAT
14912555 GTAAGATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 9 0.35
25 2 0.08
26 10 0.38
27 5 0.19
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (24 bp):
AATATATTTTTAAAAAATTACATA
Found at i:14913956 original size:34 final size:34
Alignment explanation
Indices: 14913883--14913982 Score: 123
Period size: 34 Copynumber: 3.0 Consensus size: 34
14913873 TAATTTTTTA
* * * *
14913883 GAAATGAATTTTTGAAAAAATATATAATTTTTTC
1 GAAATAAATTTTTGAAAAATTATATAACTTTTCC
* *
14913917 AAAATAAATTTTTGAAAAGTTATA-AACTTTTCC
1 GAAATAAATTTTTGAAAAATTATATAACTTTTCC
14913950 GGAAATAAATTTTT-AAAAATTATATAACTTTTC
1 -GAAATAAATTTTTGAAAAATTATATAACTTTTC
14913983 AAAAATTTAT
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
33 16 0.29
34 40 0.71
ACGTcount: A:0.45, C:0.06, G:0.07, T:0.42
Consensus pattern (34 bp):
GAAATAAATTTTTGAAAAATTATATAACTTTTCC
Found at i:14915650 original size:19 final size:20
Alignment explanation
Indices: 14915617--14915655 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
14915607 ACGGTTAAAT
* *
14915617 AATTTTTATTTTTATTTTTA
1 AATTTTTATTATTATATTTA
14915637 AATTTTTA-TATTATATTTA
1 AATTTTTATTATTATATTTA
14915656 TTTTCTATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (20 bp):
AATTTTTATTATTATATTTA
Found at i:14918048 original size:12 final size:11
Alignment explanation
Indices: 14918033--14918075 Score: 54
Period size: 10 Copynumber: 4.0 Consensus size: 11
14918023 TTATACATTA
14918033 TTTTAATATAAT
1 TTTTAATAT-AT
14918045 TTTTAATATA-
1 TTTTAATATAT
*
14918055 TTTAAATATAT
1 TTTTAATATAT
14918066 TTTT-ATATAT
1 TTTTAATATAT
14918076 AATAATTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 15 0.54
11 4 0.14
12 9 0.32
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTAATATAT
Found at i:14918062 original size:22 final size:22
Alignment explanation
Indices: 14918010--14918076 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
14918000 TTAATTGGTT
* * *
14918010 TTTAAATTTTTTTTTATACATTA
1 TTTAAATATATTTTTATATA-TA
*
14918033 TTTTAATATAATTTTTA-ATATA
1 TTTAAATAT-ATTTTTATATATA
14918055 TTTAAATATATTTTTATATATA
1 TTTAAATATATTTTTATATATA
14918077 ATAATTATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
21 7 0.19
22 15 0.41
23 9 0.24
24 6 0.16
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.61
Consensus pattern (22 bp):
TTTAAATATATTTTTATATATA
Found at i:14918076 original size:12 final size:12
Alignment explanation
Indices: 14918020--14918076 Score: 50
Period size: 12 Copynumber: 5.0 Consensus size: 12
14918010 TTTAAATTTT
*
14918020 TTTTTATACATTA
1 TTTTTATATA-TA
*
14918033 TTTTAATATA-A
1 TTTTTATATATA
14918044 TTTTTA-ATATA
1 TTTTTATATATA
*
14918055 --TTTAAATATA
1 TTTTTATATATA
14918065 TTTTTATATATA
1 TTTTTATATATA
14918077 ATAATTATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
9 4 0.11
10 8 0.22
11 7 0.19
12 9 0.25
13 8 0.22
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTTTATATATA
Found at i:14918095 original size:18 final size:19
Alignment explanation
Indices: 14918043--14918100 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 19
14918033 TTTTAATATA
**
14918043 ATTTTTAATATATTTAAATAT
1 ATTTTT-ATATATAAAAAT-T
*
14918064 ATTTTTATATATAATAATT
1 ATTTTTATATATAAAAATT
*
14918083 ATTTTTTTA-ATAAAAATT
1 ATTTTTATATATAAAAATT
14918101 TAAAATATGT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
18 8 0.25
19 9 0.28
20 9 0.28
21 6 0.19
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTTTTATATATAAAAATT
Found at i:14918149 original size:23 final size:22
Alignment explanation
Indices: 14918091--14918156 Score: 77
Period size: 23 Copynumber: 3.1 Consensus size: 22
14918081 TTATTTTTTT
14918091 AATAAAAATTTAAAATATGTAC
1 AATAAAAATTTAAAATATGTAC
*
14918113 ---AAAAA-CTAATAATATGTAC
1 AATAAAAATTTAA-AATATGTAC
14918132 ATATAAAAATTTAAAATATGTAC
1 A-ATAAAAATTTAAAATATGTAC
14918155 AA
1 AA
14918157 AATTTTAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
18 3 0.08
19 14 0.39
22 1 0.03
23 15 0.42
24 3 0.08
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.30
Consensus pattern (22 bp):
AATAAAAATTTAAAATATGTAC
Found at i:14918163 original size:19 final size:19
Alignment explanation
Indices: 14918094--14918166 Score: 76
Period size: 19 Copynumber: 3.6 Consensus size: 19
14918084 TTTTTTTAAT
14918094 AAAAATTTAAAATATGTAC
1 AAAAATTTAAAATATGTAC
*
14918113 AAAAA-CTAATAATATGTAC
1 AAAAATTTAA-AATATGTAC
14918132 ATATAAAAATTTAAAATATGTAC
1 ----AAAAATTTAAAATATGTAC
*
14918155 AAAATTTTAAAA
1 AAAAATTTAAAA
14918167 ATTTGAATAG
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
18 3 0.07
19 25 0.56
23 14 0.31
24 3 0.07
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.32
Consensus pattern (19 bp):
AAAAATTTAAAATATGTAC
Found at i:14919581 original size:65 final size:65
Alignment explanation
Indices: 14919507--14919639 Score: 248
Period size: 65 Copynumber: 2.0 Consensus size: 65
14919497 ATTCATCTTC
* *
14919507 AAAAACTTTAATCGTTGAGATTAAAAATTAATTTGGTAACGTTGTTGGAGTGTGATCTTAATACT
1 AAAAACTTTAATCATTGAGATTAAAAATTAATTTGGTAACATTGTTGGAGTGTGATCTTAATACT
14919572 AAAAACTTTAATCATTGAGATTAAAAATTAATTTGGTAACATTGTTGGAGTGTGATCTTAATACT
1 AAAAACTTTAATCATTGAGATTAAAAATTAATTTGGTAACATTGTTGGAGTGTGATCTTAATACT
14919637 AAA
1 AAA
14919640 TTTATATAAA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.38
Consensus pattern (65 bp):
AAAAACTTTAATCATTGAGATTAAAAATTAATTTGGTAACATTGTTGGAGTGTGATCTTAATACT
Found at i:14923287 original size:21 final size:22
Alignment explanation
Indices: 14923254--14923294 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
14923244 TGGAACTCTT
14923254 AACCCTCAAAACCTTAAAACTA
1 AACCCTCAAAACCTTAAAACTA
*
14923276 AACCCT-AAAACCTTTAAAC
1 AACCCTCAAAACCTTAAAAC
14923295 CCCGATATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.20
Consensus pattern (22 bp):
AACCCTCAAAACCTTAAAACTA
Found at i:14923331 original size:59 final size:57
Alignment explanation
Indices: 14923257--14923379 Score: 174
Period size: 59 Copynumber: 2.1 Consensus size: 57
14923247 AACTCTTAAC
* * * * *
14923257 CCTCAAAACCTTAAAACTAAACCCTAAAACCTTTAAACCCCGATATTGAAACCCTAAA
1 CCTCAAAACCTTAAAACTAAAACCTAAAACC-TCAAACCCCAAAAATGAAACCCTAAA
*
14923315 CCTTCAAAACCTTAAAACTAAAACCTTAAACCTCAAACCCCAAAAATGAAACCCTAAA
1 CC-TCAAAACCTTAAAACTAAAACCTAAAACCTCAAACCCCAAAAATGAAACCCTAAA
14923373 CCTCAAA
1 CCTCAAA
14923380 CCCCAAACCC
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
57 5 0.09
58 26 0.45
59 27 0.47
ACGTcount: A:0.47, C:0.32, G:0.02, T:0.19
Consensus pattern (57 bp):
CCTCAAAACCTTAAAACTAAAACCTAAAACCTCAAACCCCAAAAATGAAACCCTAAA
Found at i:14923352 original size:14 final size:14
Alignment explanation
Indices: 14923305--14923388 Score: 69
Period size: 14 Copynumber: 5.9 Consensus size: 14
14923295 CCCGATATTG
14923305 AAACCCTAAACCTTC
1 AAACCCTAAACC-TC
* * *
14923320 AAAACCTTAAAACTA
1 -AAACCCTAAACCTC
*
14923335 AAACCTTAAACCTC
1 AAACCCTAAACCTC
* ** *
14923349 AAACCCCAAAAATG
1 AAACCCTAAACCTC
14923363 AAACCCTAAACCTC
1 AAACCCTAAACCTC
*
14923377 AAACCCCAAACC
1 AAACCCTAAACC
14923389 CTAAAATCCC
Statistics
Matches: 53, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
14 42 0.79
15 1 0.02
16 10 0.19
ACGTcount: A:0.49, C:0.36, G:0.01, T:0.14
Consensus pattern (14 bp):
AAACCCTAAACCTC
Found at i:14923366 original size:28 final size:28
Alignment explanation
Indices: 14923275--14923386 Score: 107
Period size: 28 Copynumber: 3.9 Consensus size: 28
14923265 CCTTAAAACT
* * * *
14923275 AAACCCTAAAACCTTTAAACCCCGATATTG
1 AAACCCT-AAACC-TCAAACCCCAAAAATG
** * *
14923305 AAACCCTAAACCTTCAAAACCTTAAAACTA
1 AAACCCTAAACC-TC-AAACCCCAAAAATG
*
14923335 AAACCTTAAACCTCAAACCCCAAAAATG
1 AAACCCTAAACCTCAAACCCCAAAAATG
14923363 AAACCCTAAACCTCAAACCCCAAA
1 AAACCCTAAACCTCAAACCCCAAA
14923387 CCCTAAAATC
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
28 33 0.49
29 9 0.13
30 26 0.38
ACGTcount: A:0.47, C:0.33, G:0.03, T:0.17
Consensus pattern (28 bp):
AAACCCTAAACCTCAAACCCCAAAAATG
Found at i:14925361 original size:52 final size:52
Alignment explanation
Indices: 14925208--14925364 Score: 199
Period size: 52 Copynumber: 3.0 Consensus size: 52
14925198 TGGACAAGAA
* * *
14925208 GACTTGCAAAAGAAGAATTCCAAGA-GAAAGAGGATTCTTAATAAGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGA-GATTCTTAATAAGCAAGTTT
* * * *
14925260 GACTTGTAAGAGAAGAATTCTAAAAGGAAAGGGATTCTTAATAAACAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAAGCAAGTTT
* * **
14925312 GACTTACAAGAGAAGAATTCTAAGAGGAGAGAGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAAGCAAGTTT
14925364 G
1 G
14925365 TATGATTATA
Statistics
Matches: 89, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
52 84 0.94
53 5 0.06
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.25
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAGAGGAAAGAGATTCTTAATAAGCAAGTTT
Done.