Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167849.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_12, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22966848
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 129000 characters in sequence are not A, C, G, or T
File 98 of 129
Found at i:16244834 original size:13 final size:14
Alignment explanation
Indices: 16244802--16244906 Score: 81
Period size: 13 Copynumber: 7.5 Consensus size: 14
16244792 ATTAATATAA
*
16244802 TAATATTTTATTTAT
1 TAATATATTA-TTAT
16244817 TAATATATTATT-T
1 TAATATATTATTAT
*
16244830 TAATATATTATAAT
1 TAATATATTATTAT
* *
16244844 ATAATTTATTAATA-
1 -TAATATATTATTAT
* *
16244858 TAATATAATAATA-
1 TAATATATTATTAT
*
16244871 TAATACATTATTAAT
1 TAATATATTATT-AT
*
16244886 TAATATAATATTAT
1 TAATATATTATTAT
*
16244900 TTATATA
1 TAATATA
16244907 ATAAATATAA
Statistics
Matches: 73, Mismatches: 13, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
13 32 0.44
14 12 0.16
15 29 0.40
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (14 bp):
TAATATATTATTAT
Found at i:16244846 original size:5 final size:5
Alignment explanation
Indices: 16244830--16244918 Score: 66
Period size: 5 Copynumber: 19.0 Consensus size: 5
16244820 TATATTATTT
* *
16244830 TAATA TATTA TAATA TAAT- TTAT- TAATA TAATA T-A-A TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
* * * *
16244876 CATTA TTAAT- TAATA TAATA TTAT- TTATA TAATA -AATA TAATA
1 TAATA -TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
16244919 ATATTTATTA
Statistics
Matches: 67, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
3 2 0.03
4 20 0.30
5 43 0.64
6 2 0.03
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (5 bp):
TAATA
Found at i:16244945 original size:26 final size:25
Alignment explanation
Indices: 16244819--16244947 Score: 85
Period size: 26 Copynumber: 5.3 Consensus size: 25
16244809 TTATTTATTA
* * *
16244819 ATATATTATT-TTAATATATTATA-
1 ATATAATATTATTAATATAATAAAT
16244842 ATATAAT-TTATTAATATAATATAAT
1 ATATAATATTATTAATATAATA-AAT
* *
16244867 AATATAATA-CATT-AT-TAAT-TA-
1 -ATATAATATTATTAATATAATAAAT
*
16244888 ATATAATATTATTTATATAATAAAT
1 ATATAATATTATTAATATAATAAAT
* **
16244913 ATAATAATATTTATTAATATGATATTT
1 AT-ATAATA-TTATTAATATAATAAAT
16244940 ATATAATA
1 ATATAATA
16244948 AAAATATTAT
Statistics
Matches: 83, Mismatches: 11, Indels: 21
0.72 0.10 0.18
Matches are distributed among these distances:
20 8 0.10
21 3 0.04
22 5 0.06
23 20 0.24
24 6 0.07
25 4 0.05
26 22 0.27
27 15 0.18
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.49
Consensus pattern (25 bp):
ATATAATATTATTAATATAATAAAT
Found at i:16244967 original size:72 final size:71
Alignment explanation
Indices: 16244787--16244979 Score: 187
Period size: 72 Copynumber: 2.7 Consensus size: 71
16244777 TAACAATATA
* * * *
16244787 ATAATATTAATATAATAATATTTTATTTATTAATA-TATTATTTTAATATATTATAATATAATTT
1 ATAATATTAATATAATAAAATATTATTTATTAATATTATTATTATAATATAATATAATATAATTT
16244851 ATTAAT
66 ATTAAT
* * *
16244857 ATAATATAATAATATAATACATTATTAATTAATATAATATTATT-TATATAATA-AATATAATA-
1 ATAATAT--TAATATAATAAAATATT-ATTTAT-TAATATTATTAT-TATAATATAATATAATAT
16244919 ATATTTATTAAT
61 A-ATTTATTAAT
* * * *
16244931 ATGATATTTATATAATAAAAATATTATTTTATTAATATAATAATTATAA
1 ATAATATTAATATAAT-AAAATATTA-TTTATTAATATTATTATTATAA
16244980 CATCACTGTA
Statistics
Matches: 99, Mismatches: 14, Indels: 18
0.76 0.11 0.14
Matches are distributed among these distances:
70 7 0.07
72 35 0.35
73 17 0.17
74 30 0.30
75 10 0.10
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.49
Consensus pattern (71 bp):
ATAATATTAATATAATAAAATATTATTTATTAATATTATTATTATAATATAATATAATATAATTT
ATTAAT
Found at i:16249576 original size:2 final size:2
Alignment explanation
Indices: 16249569--16249597 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
16249559 TAACTAGAGC
16249569 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
16249598 GATGCACTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:16252580 original size:36 final size:36
Alignment explanation
Indices: 16252531--16252764 Score: 207
Period size: 36 Copynumber: 6.4 Consensus size: 36
16252521 TACATCATAG
* * *
16252531 GTCAAAAAATAAAGAATGATTAGGACGACACCATAA
1 GTCAAAAAATAAAAAACGATTAGGACGACACCGTAA
* * *
16252567 GTAAAAAAATAAAGAACGATTAGGACGACACCTTAA
1 GTCAAAAAATAAAAAACGATTAGGACGACACCGTAA
* * * *
16252603 TTCAAAAAATAAGAAAAAGACTAGGACAACACCGTAA
1 GTCAAAAAATAA-AAAACGATTAGGACGACACCGTAA
* ** ** *
16252640 GTCAAAAAATAAAAAACAACCAGGGTGACATCGTAA
1 GTCAAAAAATAAAAAACGATTAGGACGACACCGTAA
* * * * *
16252676 GTCAAAAAATAAGAAAATGACTGGGATGACATCGTAA
1 GTCAAAAAATAA-AAAACGATTAGGACGACACCGTAA
* * * **
16252713 GTCAAAAAATAAAGAACGATTGGGATGACACTATAA
1 GTCAAAAAATAAAAAACGATTAGGACGACACCGTAA
*
16252749 GTCAGAAAATAAAAAA
1 GTCAAAAAATAAAAAA
16252765 TGATCGAAAT
Statistics
Matches: 165, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
36 104 0.63
37 61 0.37
ACGTcount: A:0.53, C:0.13, G:0.17, T:0.16
Consensus pattern (36 bp):
GTCAAAAAATAAAAAACGATTAGGACGACACCGTAA
Found at i:16252650 original size:73 final size:71
Alignment explanation
Indices: 16252531--16252767 Score: 258
Period size: 73 Copynumber: 3.3 Consensus size: 71
16252521 TACATCATAG
* * * * *
16252531 GTCAAAAAATAAAGAATGATTAGGACGACACCATAAGTAAAAAAATAAAGAACGATTAGGACGAC
1 GTCAAAAAATAAAAAATGACTAGGACGACACCGTAAGTCAAAAAATAAAGAACGATTAGGATGAC
16252596 ACCTTAA
66 A-CTTAA
* * * * * ** *
16252603 TTCAAAAAATAAGAAAAAGACTAGGACAACACCGTAAGTCAAAAAATAAAAAACAACCAGGGTGA
1 GTCAAAAAATAA-AAAATGACTAGGACGACACCGTAAGTCAAAAAATAAAGAACGATTAGGATGA
*
16252668 CATCGTAA
65 CA-CTTAA
* * * *
16252676 GTCAAAAAATAAGAAAATGACTGGGATGACATCGTAAGTCAAAAAATAAAGAACGATTGGGATGA
1 GTCAAAAAATAA-AAAATGACTAGGACGACACCGTAAGTCAAAAAATAAAGAACGATTAGGATGA
16252741 CACTATAA
65 CACT-TAA
*
16252749 GTCAGAAAATAAAAAATGA
1 GTCAAAAAATAAAAAATGA
16252768 TCGAAATAAT
Statistics
Matches: 134, Mismatches: 29, Indels: 4
0.80 0.17 0.02
Matches are distributed among these distances:
72 19 0.14
73 115 0.86
ACGTcount: A:0.53, C:0.13, G:0.17, T:0.16
Consensus pattern (71 bp):
GTCAAAAAATAAAAAATGACTAGGACGACACCGTAAGTCAAAAAATAAAGAACGATTAGGATGAC
ACTTAA
Found at i:16252845 original size:108 final size:110
Alignment explanation
Indices: 16252711--16252910 Score: 269
Period size: 108 Copynumber: 1.8 Consensus size: 110
16252701 ATGACATCGT
* * *
16252711 AAGTCAAAAAATAAAGAACGATTGGGATGACACTATAAGTCAGAAAAT-AAAAAATGATCGAAAT
1 AAGTCAAAAAATAAAGAACGACTGGGATGACACTATAAATCAAAAAATAAAAAAATGATCGAAAT
*
16252775 AATACCGCAAGT-TAAAAAATAAAAAATAGTCAAGACAACACCAC
66 AATACCGCAAGTCAAAAAAATAAAAAATAGTCAAGACAACACCAC
* * * * * **
16252819 AAGTCAAAAAATAAAGGATGACTGGGATGACATTGTAAATCAAAAAATAAAAAAATGATTGGGAT
1 AAGTCAAAAAATAAAGAACGACTGGGATGACACTATAAATCAAAAAATAAAAAAATGATCGAAAT
* *
16252884 AATATCGTAAGTCAAAAAAATAAAAAA
66 AATACCGCAAGTCAAAAAAATAAAAAA
16252911 AATGATTGGG
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
108 41 0.53
109 23 0.30
110 13 0.17
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.18
Consensus pattern (110 bp):
AAGTCAAAAAATAAAGAACGACTGGGATGACACTATAAATCAAAAAATAAAAAAATGATCGAAAT
AATACCGCAAGTCAAAAAAATAAAAAATAGTCAAGACAACACCAC
Found at i:16252966 original size:39 final size:38
Alignment explanation
Indices: 16252819--16252951 Score: 155
Period size: 39 Copynumber: 3.5 Consensus size: 38
16252809 ACAACACCAC
** * *
16252819 AAGTC-AAAAAAT-AAAGGATGACTGGGATGACATTGT
1 AAGTCAAAAAAATAAAAAAATGATTGGGATAACATTGT
* * *
16252855 AAATC-AAAAAATAAAAAAATGATTGGGATAATATCGT
1 AAGTCAAAAAAATAAAAAAATGATTGGGATAACATTGT
16252892 AAGTCAAAAAAATAAAAAAAATGATTGGGATAACATTGT
1 AAGTCAAAAAAAT-AAAAAAATGATTGGGATAACATTGT
*
16252931 AAGTCAAAAAAAATAAGAAAA
1 AAGTC-AAAAAAATAAAAAAA
16252952 CGACTTGGAC
Statistics
Matches: 82, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
36 11 0.13
37 22 0.27
38 7 0.09
39 34 0.41
40 8 0.10
ACGTcount: A:0.56, C:0.06, G:0.17, T:0.21
Consensus pattern (38 bp):
AAGTCAAAAAAATAAAAAAATGATTGGGATAACATTGT
Found at i:16252973 original size:39 final size:38
Alignment explanation
Indices: 16252667--16252973 Score: 172
Period size: 36 Copynumber: 8.3 Consensus size: 38
16252657 AACCAGGGTG
* * *
16252667 ACATCGTAAGTC-AAAAAATAAGAAAATGACTGGGATG
1 ACATCGTAAGTCAAAAAAATAAAAAAATGATTGGGATA
* * *
16252704 ACATCGTAAGTC-AAAAAAT-AAAGAACGATTGGGATG
1 ACATCGTAAGTCAAAAAAATAAAAAAATGATTGGGATA
* * * **
16252740 ACA-CTATAAGTC-AGAAAAT-AAAAAATGATCGAAATA
1 ACATC-GTAAGTCAAAAAAATAAAAAAATGATTGGGATA
* * * * *** *
16252776 ATACCGCAAGT-TAAAAAAT-AAAAAAT-AGTCAAGACA
1 ACATCGTAAGTCAAAAAAATAAAAAAATGA-TTGGGATA
* ** ** * *
16252812 ACACCACAAGTC-AAAAAAT-AAAGGATGACTGGGATG
1 ACATCGTAAGTCAAAAAAATAAAAAAATGATTGGGATA
* *
16252848 ACATTGTAAATC-AAAAAATAAAAAAATGATTGGGATA
1 ACATCGTAAGTCAAAAAAATAAAAAAATGATTGGGATA
*
16252885 ATATCGTAAGTCAAAAAAATAAAAAAAATGATTGGGATA
1 ACATCGTAAGTCAAAAAAAT-AAAAAAATGATTGGGATA
* * * *
16252924 ACATTGTAAGTCAAAAAAAATAAGAAAACGACTT-GGACA
1 ACATCGTAAGTC-AAAAAAATAAAAAAATGA-TTGGGATA
*
16252963 ACATCATAAGT
1 ACATCGTAAGT
16252974 TAGAAATAAA
Statistics
Matches: 211, Mismatches: 48, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
35 2 0.01
36 100 0.47
37 43 0.20
38 7 0.03
39 49 0.23
40 10 0.05
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.20
Consensus pattern (38 bp):
ACATCGTAAGTCAAAAAAATAAAAAAATGATTGGGATA
Found at i:16253118 original size:73 final size:73
Alignment explanation
Indices: 16252977--16253203 Score: 181
Period size: 73 Copynumber: 3.1 Consensus size: 73
16252967 CATAAGTTAG
* * * * *** **
16252977 AAATAAAGAACGAC-CGAGACAACATTGCAAGTTGAAAAATTAGAAAATGATTGAGAAAACACTG
1 AAATAAAGAACGACTAG-GACGACATTGCAAGTTGAAAAATAAGAAAATAACCAAGAAAACACCA
16253041 TAAGTCAAA
65 TAAGTCAAA
** *
16253050 AAATAAAGAACGACTAGGACGACATTGCAAGTTGAAAAATAAGAAAATAACCAAGATGATACCAT
1 AAATAAAGAACGACTAGGACGACATTGCAAGTTGAAAAATAAGAAAATAACCAAGAAAACACCAT
* *
16253115 AAGTTAGA
66 AAGTCAAA
* * * * * ** * * * * * *
16253123 AAATAAAGAACAACTGGGATGATACTGCAAGTCAAAAAATAAG-AAATGATCGAGATAACATCAC
1 AAATAAAGAACGACTAGGACGACATTGCAAGTTGAAAAATAAGAAAATAACCAAGAAAACACCAT
16253187 AAGT-AAA
66 AAGTCAAA
16253194 AAATAAAGAA
1 AAATAAAGAA
16253204 TGATTGAGAT
Statistics
Matches: 124, Mismatches: 29, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
71 12 0.10
72 18 0.15
73 93 0.75
74 1 0.01
ACGTcount: A:0.54, C:0.12, G:0.17, T:0.17
Consensus pattern (73 bp):
AAATAAAGAACGACTAGGACGACATTGCAAGTTGAAAAATAAGAAAATAACCAAGAAAACACCAT
AAGTCAAA
Found at i:16253195 original size:35 final size:36
Alignment explanation
Indices: 16253150--16253275 Score: 166
Period size: 36 Copynumber: 3.5 Consensus size: 36
16253140 GATGATACTG
16253150 CAAGTCAAAAAATAAGAAATGATCGAGATAACATCA
1 CAAGTCAAAAAATAAGAAATGATCGAGATAACATCA
*
16253186 CAAGT-AAAAAATAA-AGAATGATTGAGATAACATCA
1 CAAGTCAAAAAATAAGA-AATGATCGAGATAACATCA
* * *
16253221 CAAGTCAAAAAATAAAAAATGATCGAGATGACATTA
1 CAAGTCAAAAAATAAGAAATGATCGAGATAACATCA
* * *
16253257 TAAGTTAAAATATAAGAAA
1 CAAGTCAAAAAATAAGAAA
16253276 ACGACTGGGG
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
34 1 0.01
35 32 0.41
36 45 0.57
37 1 0.01
ACGTcount: A:0.57, C:0.10, G:0.13, T:0.20
Consensus pattern (36 bp):
CAAGTCAAAAAATAAGAAATGATCGAGATAACATCA
Found at i:16254692 original size:127 final size:126
Alignment explanation
Indices: 16254486--16254733 Score: 313
Period size: 127 Copynumber: 2.0 Consensus size: 126
16254476 TTTCTTTTTT
* * * * **
16254486 TTTTTGTTTTTTTTAAAGGATTTTCTCCTAGCTCCACCTTCATTAAGCTACTTTTTTAGGTTTTT
1 TTTTTGTTTTTTTTAAAGGATTTCCTCATAGCTCCACCTTCATTAAGCCACTCTTTTAGGTTTCA
** * * **
16254551 AGCTTAAATGATTATTTTTTTGATTTAGACCG-CCATTTTTGGGTTTTCAATCTAAATCGTC
66 AGCTTAAACAATTATTCTTTTGATTCAGACCGTCC-TTTTCAGGTTTTCAATCTAAATCGTC
*
16254612 TTTTTGTTTTTTTTGAAA-GATTTCCTCATAGCTCCACCTTTATTTAAGCCACTCTTTTAGGTTA
1 TTTTTGTTTTTTTT-AAAGGATTTCCTCATAGCTCCACCTTCA-TTAAGCCACTCTTTTAGGTT-
*
16254676 TCAAG-TTAAACAATTATTCTTTTGATTCAGACTGTCCTTTTCAGGTTTTCAATCTAAA
63 TCAAGCTTAAACAATTATTCTTTTGATTCAGACCGTCCTTTTCAGGTTTTCAATCTAAA
16254734 CTTTTTTTTT
Statistics
Matches: 104, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
126 35 0.34
127 64 0.62
128 5 0.05
ACGTcount: A:0.23, C:0.17, G:0.12, T:0.49
Consensus pattern (126 bp):
TTTTTGTTTTTTTTAAAGGATTTCCTCATAGCTCCACCTTCATTAAGCCACTCTTTTAGGTTTCA
AGCTTAAACAATTATTCTTTTGATTCAGACCGTCCTTTTCAGGTTTTCAATCTAAATCGTC
Found at i:16261992 original size:21 final size:21
Alignment explanation
Indices: 16261968--16262034 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
16261958 CGCCTAAATA
16261968 CTTTGTTGAATCTCCATTACT
1 CTTTGTTGAATCTCCATTACT
* ** * * *
16261989 CTTTCTTTTAT-TTCTTTAAT
1 CTTTGTTGAATCTCCATTACT
*
16262009 ACTTTGTTGAATCTCTATTACT
1 -CTTTGTTGAATCTCCATTACT
16262031 CTTT
1 CTTT
16262035 CTTTTATTTC
Statistics
Matches: 31, Mismatches: 13, Indels: 4
0.65 0.27 0.08
Matches are distributed among these distances:
20 6 0.19
21 20 0.65
22 5 0.16
ACGTcount: A:0.18, C:0.19, G:0.06, T:0.57
Consensus pattern (21 bp):
CTTTGTTGAATCTCCATTACT
Found at i:16262023 original size:42 final size:42
Alignment explanation
Indices: 16261964--16262047 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
16261954 TTTACGCCTA
16261964 AATACTTTGTTGAATCTCCATTACTCTTTCTTTTATTTCTTT
1 AATACTTTGTTGAATCTCCATTACTCTTTCTTTTATTTCTTT
*
16262006 AATACTTTGTTGAATCTCTATTACTCTTTCTTTTATTTCTTT
1 AATACTTTGTTGAATCTCCATTACTCTTTCTTTTATTTCTTT
16262048 TTGTGCCCTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.19, C:0.18, G:0.05, T:0.58
Consensus pattern (42 bp):
AATACTTTGTTGAATCTCCATTACTCTTTCTTTTATTTCTTT
Found at i:16264584 original size:4 final size:4
Alignment explanation
Indices: 16264575--16264606 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
16264565 AATAATGTTG
*
16264575 ATAA ATAA ATAA ACAA ATAA ATAA ATAA ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
16264607 TCAAGCATAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (4 bp):
ATAA
Found at i:16265872 original size:2 final size:2
Alignment explanation
Indices: 16265865--16265895 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
16265855 ACTAGAGCAA
16265865 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
16265896 TATATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:16269216 original size:24 final size:24
Alignment explanation
Indices: 16269172--16269222 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 24
16269162 CATCCAAGTT
16269172 TTTTTTATATTTAATTTAATTTAG
1 TTTTTTATATTTAATTTAATTTAG
*
16269196 TTTTTT-T-TTTAACTTTCAATTTTG
1 TTTTTTATATTTAA-TTT-AATTTAG
16269220 TTT
1 TTT
16269223 ATTGAAACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 5 0.21
23 4 0.17
24 15 0.62
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.71
Consensus pattern (24 bp):
TTTTTTATATTTAATTTAATTTAG
Found at i:16269305 original size:22 final size:22
Alignment explanation
Indices: 16269253--16269315 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
16269243 AACAAAAGTC
*
16269253 TCACATCCAAAA-TTCAAATAT
1 TCACATCCAAAATTTCAAAGAT
* *
16269274 TCACATTCCAAAATTTTAGAGAT
1 TCACA-TCCAAAATTTCAAAGAT
*
16269297 TCACATCCAAGATTTCAAA
1 TCACATCCAAAATTTCAAA
16269316 AATTTTAAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 5 0.15
22 18 0.53
23 11 0.32
ACGTcount: A:0.43, C:0.22, G:0.05, T:0.30
Consensus pattern (22 bp):
TCACATCCAAAATTTCAAAGAT
Found at i:16269318 original size:31 final size:31
Alignment explanation
Indices: 16269283--16269351 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
16269273 TTCACATTCC
* * *
16269283 AAAATTTTAGAGATTCACATCCAAGATTTCA
1 AAAATTTTAAAGATGCACATCCAAAATTTCA
*
16269314 AAAATTTTAAAGATGCACATCCAAAATTTTA
1 AAAATTTTAAAGATGCACATCCAAAATTTCA
*
16269345 AATATTT
1 AAAATTT
16269352 GGAATTAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.45, C:0.13, G:0.07, T:0.35
Consensus pattern (31 bp):
AAAATTTTAAAGATGCACATCCAAAATTTCA
Found at i:16271794 original size:3 final size:3
Alignment explanation
Indices: 16271786--16271827 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
16271776 TGTTAATCTA
16271786 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
16271828 TATTTATTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:16272902 original size:18 final size:17
Alignment explanation
Indices: 16272879--16272912 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
16272869 TAATAAATTG
16272879 AAATAATGAAAATATAAA
1 AAATAATGAAAA-ATAAA
16272897 AAATAATGAAAAATAA
1 AAATAATGAAAAATAA
16272913 CTAAAATATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (17 bp):
AAATAATGAAAAATAAA
Found at i:16273216 original size:3 final size:3
Alignment explanation
Indices: 16273208--16273254 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
16273198 AATAAATACA
16273208 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
16273255 GTGGTGATTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:16281416 original size:43 final size:43
Alignment explanation
Indices: 16281352--16282028 Score: 372
Period size: 43 Copynumber: 15.9 Consensus size: 43
16281342 TCAAAAGTCA
* * * * *
16281352 TTAACCCTTTACTTAAATGAGCATTTTAAATTTTTAAAAATTG
1 TTAAGCCTCTACTTAGATGAGCCTTTTAAATTTTTAAAAGTTG
* * * * **
16281395 TCAAGCCTCTCCTTATATGAGCTTTTTAAATTTTTAAAAGTCA
1 TTAAGCCTCTACTTAGATGAGCCTTTTAAATTTTTAAAAGTTG
* * * *
16281438 TTAAGCCTCTACTTAGAAGAGTCTTTTAAACTTTCAAAAGTTG
1 TTAAGCCTCTACTTAGATGAGCCTTTTAAATTTTTAAAAGTTG
* *
16281481 TTGAGCCTCTACTTAGATGAGCCTTTTAAATTTTCAAAA-TTG
1 TTAAGCCTCTACTTAGATGAGCCTTTTAAATTTTTAAAAGTTG
* * * * * *
16281523 ATGAGCCTTTACTTAGA-GAAGTCTTTTAAACTTTTAAAAGTTA
1 TTAAGCCTCTACTTAGATG-AGCCTTTTAAATTTTTAAAAGTTG
* * * *
16281566 TTGAGCCTCTACTTAGAGGAGCCTTTTAAATCTTCAAAAGTTG
1 TTAAGCCTCTACTTAGATGAGCCTTTTAAATTTTTAAAAGTTG
* * * **
16281609 TCAAG-CTTTACTTAGATGAGCCTTTTAAATTTTCAAAAGTCA
1 TTAAGCCTCTACTTAGATGAGCCTTTTAAATTTTTAAAAGTTG
** * * * * * * **
16281651 TGGAG-CTGTTCTTAGAAGAGCTTTTTAAATTATGAAAAGTCA
1 TTAAGCCTCTACTTAGATGAGCCTTTTAAATTTTTAAAAGTTG
* * * * * *
16281693 CTAAGCATTTATTTACAGGAGCCTTTTAAATTTTTAAAA-TTG
1 TTAAGCCTCTACTTAGATGAGCCTTTTAAATTTTTAAAAGTTG
* * ** * * *
16281735 TTGAGCCTCTACTTAGGTGAATCTTTTAAACTTTCAAAAGTTA
1 TTAAGCCTCTACTTAGATGAGCCTTTTAAATTTTTAAAAGTTG
* * * * * *
16281778 TCAAGCCTTTACTCAAAAAT-A-CCTTTTAAA-TTTTCAAATTTG
1 TTAAGCCTCTACT--TAGATGAGCCTTTTAAATTTTTAAAAGTTG
* * * * * * **
16281820 TTGAGCCTTTACTCAAAGGAACCTTTTAAATTTACAAAA-TTG
1 TTAAGCCTCTACTTAGATGAGCCTTTTAAATTTTTAAAAGTTG
* * ** ** * *
16281862 TTGAGCCTCTATTTAGAAAAGTATTTTAAATTTTCAAAAGTTA
1 TTAAGCCTCTACTTAGATGAGCCTTTTAAATTTTTAAAAGTTG
* * * **
16281905 TTGAA-TCTCTAGTCAGATGAGCCTTTTAAATTTACAAAA-TTG
1 TT-AAGCCTCTACTTAGATGAGCCTTTTAAATTTTTAAAAGTTG
*** * * *
16281947 TTAAAAATCTACTTAGA-GCAG-TTCTTTAAATTTTCAAAAGTTA
1 TTAAGCCTCTACTTAGATG-AGCCT-TTTAAATTTTTAAAAGTTG
* * * * *
16281990 TAAAGCCTCTGCTTAGATGAACCATTCAAATTTTTAAAA
1 TTAAGCCTCTACTTAGATGAGCCTTTTAAATTTTTAAAA
16282029 TAAAAAACAA
Statistics
Matches: 482, Mismatches: 134, Indels: 36
0.74 0.21 0.06
Matches are distributed among these distances:
40 3 0.01
41 6 0.01
42 219 0.45
43 248 0.51
44 4 0.01
45 2 0.00
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (43 bp):
TTAAGCCTCTACTTAGATGAGCCTTTTAAATTTTTAAAAGTTG
Found at i:16281549 original size:42 final size:42
Alignment explanation
Indices: 16281418--16281900 Score: 274
Period size: 42 Copynumber: 11.4 Consensus size: 42
16281408 TATATGAGCT
* * * * * *
16281418 TTTTAAATTTTTAAAAGTCATTAAGCCTCTACTTAGA-AGAGTC
1 TTTTAAATTTTCAAAATTGA-TGAGCCTTTACTTAGAGA-AGCC
* * *
16281461 TTTTAAACTTTCAAAAGTTGTTGAGCCTCTACTTAGATG-AGCC
1 TTTTAAATTTTCAAAA-TTGATGAGCCTTTACTTAGA-GAAGCC
*
16281504 TTTTAAATTTTCAAAATTGATGAGCCTTTACTTAGAGAAGTC
1 TTTTAAATTTTCAAAATTGATGAGCCTTTACTTAGAGAAGCC
* *
16281546 TTTTAAACTTTT-AAAAGTT-ATTGAGCCTCTACTTAGAGGAGCC
1 TTTTAAA-TTTTCAAAA-TTGA-TGAGCCTTTACTTAGAGAAGCC
* *
16281589 TTTTAAATCTTCAAAAGTTG-TCAAG-CTTTACTTAGATG-AGCC
1 TTTTAAATTTTCAAAA-TTGAT-GAGCCTTTACTTAGA-GAAGCC
* * *
16281631 TTTTAAATTTTCAAAAGTCATGGAG-CTGTT-CTTAGA-AGAGCT
1 TTTTAAATTTTCAAAATTGAT-GAGCCT-TTACTTAGAGA-AGCC
* * * * * * * * *
16281673 TTTTAAATTATGAAAAGTCACTAAGCATTTATTTACAGGAGCC
1 TTTTAAATTTTCAAAATTGA-TGAGCCTTTACTTAGAGAAGCC
* * * * *
16281716 TTTTAAATTTTTAAAATTGTTGAGCCTCTACTTAGGTGAA-TC
1 TTTTAAATTTTCAAAATTGATGAGCCTTTACTTA-GAGAAGCC
* * * * *
16281758 TTTTAAACTTTCAAAAGTT-ATCAAGCCTTTACTCA-AAAATACC
1 TTTTAAATTTTCAAAA-TTGAT-GAGCCTTTACTTAGAGAA-GCC
* * * *
16281801 TTTTAAATTTTCAAATTTGTTGAGCCTTTACTCAAAGGAA-CC
1 TTTTAAATTTTCAAAATTGATGAGCCTTTACTTAGA-GAAGCC
* * * * * **
16281843 TTTTAAATTTACAAAATTGTTGAGCCTCTATTTAGAAAAGTA
1 TTTTAAATTTTCAAAATTGATGAGCCTTTACTTAGAGAAGCC
16281885 TTTTAAATTTTCAAAA
1 TTTTAAATTTTCAAAA
16281901 GTTATTGAAT
Statistics
Matches: 344, Mismatches: 68, Indels: 57
0.73 0.14 0.12
Matches are distributed among these distances:
41 6 0.02
42 189 0.55
43 146 0.42
44 3 0.01
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.39
Consensus pattern (42 bp):
TTTTAAATTTTCAAAATTGATGAGCCTTTACTTAGAGAAGCC
Found at i:16281553 original size:85 final size:85
Alignment explanation
Indices: 16281375--16282029 Score: 461
Period size: 85 Copynumber: 7.7 Consensus size: 85
16281365 TAAATGAGCA
* * * ** * * * * * *
16281375 TTTTAAATTTTTAAAAATTGTCAAGCCTCTCCTTATATGAGCTTTTTAAATTTTTAAAAGTCATT
1 TTTTAAATTTTCAAAAGTTATTGAGCCTCTACTTAGATGAGCCTTTTAAATTTTCAAAATTGA-T
*
16281440 AAGCCTCTACTTAGA-AGAGTC
65 AAGCCTTTACTTAGAGA-AGTC
* * *
16281461 TTTTAAACTTTCAAAAGTTGTTGAGCCTCTACTTAGATGAGCCTTTTAAATTTTCAAAATTGATG
1 TTTTAAATTTTCAAAAGTTATTGAGCCTCTACTTAGATGAGCCTTTTAAATTTTCAAAATTGATA
16281526 AGCCTTTACTTAGAGAAGTC
66 AGCCTTTACTTAGAGAAGTC
* *
16281546 TTTTAAACTTTT-AAAAGTTATTGAGCCTCTACTTAGAGGAGCCTTTTAAATCTTCAAAAGTTG-
1 TTTTAAA-TTTTCAAAAGTTATTGAGCCTCTACTTAGATGAGCCTTTTAAATTTTCAAAA-TTGA
*
16281609 TCAAG-CTTTACTTAGATG-AGCC
64 T-AAGCCTTTACTTAGA-GAAGTC
* * * * * * * * * *
16281631 TTTTAAATTTTCAAAAGTCATGGAG-CTGTTCTTAGAAGAGCTTTTTAAATTATGAAAAGTCACT
1 TTTTAAATTTTCAAAAGTTATTGAGCCTCTACTTAGATGAGCCTTTTAAATTTTCAAAATTGA-T
* * * * *
16281695 AAGCATTTATTTACAGGAGCC
65 AAGCCTTTACTTAGAGAAGTC
* * * ** *
16281716 TTTTAAATTTTTAAAA-TTGTTGAGCCTCTACTTAGGTGAATCTTTTAAACTTTCAAAAGTT-AT
1 TTTTAAATTTTCAAAAGTTATTGAGCCTCTACTTAGATGAGCCTTTTAAATTTTCAAAA-TTGAT
* *
16281779 CAAGCCTTTACTCA-A-AAATACC
65 -AAGCCTTTACTTAGAGAAGT--C
* * * * * * * * * *
16281801 TTTTAAATTTTC-AAATTTGTTGAGCCTTTACTCAAAGGAACCTTTTAAATTTACAAAATTGTTG
1 TTTTAAATTTTCAAAAGTTATTGAGCCTCTACTTAGATGAGCCTTTTAAATTTTCAAAATTGATA
* * * *
16281865 AGCCTCTATTTAGAAAAGTA
66 AGCCTTTACTTAGAGAAGTC
** * * * *
16281885 TTTTAAATTTTCAAAAGTTATTGAATCTCTAGTCAGATGAGCCTTTTAAATTTACAAAATTGTTA
1 TTTTAAATTTTCAAAAGTTATTGAGCCTCTACTTAGATGAGCCTTTTAAATTTTCAAAATTGATA
*** * *
16281950 AAAATCTACTTAGAGCAGT-
66 AGCCTTTACTTAGAGAAGTC
** * * * * *
16281969 TCTTTAAATTTTCAAAAGTTATAAAGCCTCTGCTTAGATGAACCATTCAAATTTTTAAAAT
1 T-TTTAAATTTTCAAAAGTTATTGAGCCTCTACTTAGATGAGCCTTTTAAATTTTCAAAAT
16282030 AAAAAACAAA
Statistics
Matches: 450, Mismatches: 98, Indels: 43
0.76 0.17 0.07
Matches are distributed among these distances:
83 2 0.00
84 68 0.15
85 314 0.70
86 66 0.15
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.39
Consensus pattern (85 bp):
TTTTAAATTTTCAAAAGTTATTGAGCCTCTACTTAGATGAGCCTTTTAAATTTTCAAAATTGATA
AGCCTTTACTTAGAGAAGTC
Found at i:16281689 original size:127 final size:126
Alignment explanation
Indices: 16281361--16281902 Score: 438
Period size: 127 Copynumber: 4.3 Consensus size: 126
16281351 ATTAACCCTT
* * * * * *
16281361 TACTTAAATGAGCATTTTAAATTTTTAAAAATTGTCA--AGCCTCTCCTTATATGAGCTTTTTAA
1 TACTTAGATGAGCCTTTTAAA-TTTTCAAAA--GTCATGAGCCTTTACTTAGA-GAGCTTTTTAA
* *
16281424 ATTTTTAAAAGTCATTAAGCCTCTACTTAGAAGAGTCTTTTAAA-CTTTCAAAAGTTGTTGAGCC
62 A-TTTTAAAAGTCATTAAGCCTCTACTTAGAGGAGCCTTTTAAATC-TTCAAAAGTTGTTGAGCC
16281488 TC
125 TC
* *
16281490 TACTTAGATGAGCCTTTTAAATTTTCAAAATTGATGAGCCTTTACTTAGAGAAG-TCTTTTAAAC
1 TACTTAGATGAGCCTTTTAAATTTTCAAAAGTCATGAGCCTTTACTTAGAG-AGCT-TTTTAAA-
* * ** *
16281554 TTTTAAAAGTTATTGAGCCTCTACTTAGAGGAGCCTTTTAAATCTTCAAAAGTTGTCAAG-CTT
63 TTTTAAAAGTCATTAAGCCTCTACTTAGAGGAGCCTTTTAAATCTTCAAAAGTTGTTGAGCCTC
16281617 TACTTAGATGAGCCTTTTAAATTTTCAAAAGTCATGGAG-CTGTT-CTTAGAAGAGCTTTTTAAA
1 TACTTAGATGAGCCTTTTAAATTTTCAAAAGTCAT-GAGCCT-TTACTTAG-AGAGCTTTTTAAA
* * * * * * * *
16281680 TTATGAAAAGTCACTAAGCATTTATTTACAGGAGCCTTTTAAATTTTTAAAA-TTGTTGAGCCTC
63 TT-TTAAAAGTCATTAAGCCTCTACTTAGAGGAGCCTTTTAAATCTTCAAAAGTTGTTGAGCCTC
* ** * * * * * * * *
16281744 TACTTAGGTGAATCTTTTAAACTTTCAAAAGTTATCAAGCCTTTACTCAAAAATACCTTTTAAAT
1 TACTTAGATGAGCCTTTTAAATTTTCAAAAGTCAT-GAGCCTTTACTTAGAGA-GCTTTTTAAAT
* * ** * * * * *
16281809 TTTCAAATTTGTTGAGCCTTTACTCAAAGGAACCTTTTAAAT-TTACAAAA-TTGTTGAGCCTC
64 TTTAAAAGTCATTAAGCCTCTACTTAGAGGAGCCTTTTAAATCTT-CAAAAGTTGTTGAGCCTC
* ** **
16281871 TATTTAGAAAAGTATTTTAAATTTTCAAAAGT
1 TACTTAGATGAGCCTTTTAAATTTTCAAAAGT
16281903 TATTGAATCT
Statistics
Matches: 335, Mismatches: 63, Indels: 32
0.78 0.15 0.07
Matches are distributed among these distances:
126 12 0.04
127 200 0.60
128 103 0.31
129 20 0.06
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (126 bp):
TACTTAGATGAGCCTTTTAAATTTTCAAAAGTCATGAGCCTTTACTTAGAGAGCTTTTTAAATTT
TAAAAGTCATTAAGCCTCTACTTAGAGGAGCCTTTTAAATCTTCAAAAGTTGTTGAGCCTC
Found at i:16283257 original size:7 final size:7
Alignment explanation
Indices: 16283245--16283318 Score: 55
Period size: 7 Copynumber: 10.7 Consensus size: 7
16283235 TATCATAATT
16283245 TTTTTTA
1 TTTTTTA
16283252 TTTTTTA
1 TTTTTTA
*
16283259 TTTTTTGC
1 TTTTTT-A
*
16283267 TTATTTA
1 TTTTTTA
* *
16283274 TTATATA
1 TTTTTTA
16283281 -TTTTTA
1 TTTTTTA
16283287 TTATTTTA
1 TT-TTTTA
*
16283295 TTATTTA
1 TTTTTTA
*
16283302 -TTATT-
1 TTTTTTA
16283307 TTTTTTA
1 TTTTTTA
16283314 TTTTT
1 TTTTT
16283319 GCATAAACTT
Statistics
Matches: 52, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
6 11 0.21
7 29 0.56
8 12 0.23
ACGTcount: A:0.19, C:0.01, G:0.01, T:0.78
Consensus pattern (7 bp):
TTTTTTA
Found at i:16283257 original size:8 final size:8
Alignment explanation
Indices: 16283244--16283318 Score: 53
Period size: 8 Copynumber: 8.6 Consensus size: 8
16283234 TTATCATAAT
16283244 TTTTTTTA
1 TTTTTTTA
16283252 -TTTTTTA
1 TTTTTTTA
16283259 TTTTTTGCTTA
1 -TTTTT--TTA
*
16283270 TTTATTATA
1 TTT-TTTTA
*
16283279 TATTTTTA
1 TTTTTTTA
*
16283287 TTATTTTA
1 TTTTTTTA
16283295 TTATTTATTA
1 TT-TTT-TTA
16283305 TTTTTTTTA
1 -TTTTTTTA
16283314 TTTTT
1 TTTTT
16283319 GCATAAACTT
Statistics
Matches: 53, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
7 7 0.13
8 17 0.32
9 13 0.25
10 9 0.17
11 7 0.13
ACGTcount: A:0.19, C:0.01, G:0.01, T:0.79
Consensus pattern (8 bp):
TTTTTTTA
Found at i:16283284 original size:28 final size:26
Alignment explanation
Indices: 16283253--16283318 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 26
16283243 TTTTTTTTAT
*
16283253 TTTTTATTTTTTGCTTATTTATTATATA
1 TTTTTATTTTTT-ATTATTTATTAT-TA
*
16283281 TTTTTATTATTTTATTATTTATTATTT
1 TTTTTATT-TTTTATTATTTATTATTA
16283308 TTTTTATTTTT
1 TTTTTATTTTT
16283319 GCATAAACTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 3 0.09
27 9 0.26
28 19 0.54
29 4 0.11
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.77
Consensus pattern (26 bp):
TTTTTATTTTTTATTATTTATTATTA
Found at i:16283525 original size:24 final size:22
Alignment explanation
Indices: 16283489--16283542 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 22
16283479 TTAAAATTTT
*
16283489 AATAAACATAATAAAGAAAAATATA
1 AATAAA-ACAATAAAG-AAAA-ATA
**
16283514 AATAAAACAATATTGAAAAATA
1 AATAAAACAATAAAGAAAAATA
16283536 AATAAAA
1 AATAAAA
16283543 TATGAGAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 10 0.38
23 4 0.15
24 6 0.23
25 6 0.23
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.20
Consensus pattern (22 bp):
AATAAAACAATAAAGAAAAATA
Found at i:16283536 original size:18 final size:17
Alignment explanation
Indices: 16283513--16283561 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 17
16283503 AGAAAAATAT
16283513 AAATAAAACAATATTGA-A
1 AAATAAAA-AATA-TGAGA
16283531 AAATAAATAAAATATGAGA
1 AAAT-AA-AAAATATGAGA
16283550 AAATAAAAAATA
1 AAATAAAAAATA
16283562 AAATTACAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
17 6 0.21
18 9 0.32
19 11 0.39
20 2 0.07
ACGTcount: A:0.71, C:0.02, G:0.06, T:0.20
Consensus pattern (17 bp):
AAATAAAAAATATGAGA
Found at i:16283552 original size:19 final size:18
Alignment explanation
Indices: 16283513--16283559 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
16283503 AGAAAAATAT
*
16283513 AAATAAAACAATATTGAA
1 AAATAAAAAAATATTGAA
16283531 AAATAAATAAAATA-TGAGA
1 AAATAAA-AAAATATTGA-A
16283550 AAATAAAAAA
1 AAATAAAAAA
16283560 TAAAATTACA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 13 0.50
19 13 0.50
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.19
Consensus pattern (18 bp):
AAATAAAAAAATATTGAA
Found at i:16283834 original size:3 final size:3
Alignment explanation
Indices: 16283821--16283885 Score: 121
Period size: 3 Copynumber: 21.3 Consensus size: 3
16283811 GAATTAAATA
16283821 AAT ACAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
16283867 AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT A
16283886 TCATAAGTGG
Statistics
Matches: 61, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 58 0.95
4 3 0.05
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:16285786 original size:21 final size:21
Alignment explanation
Indices: 16285762--16285805 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
16285752 TTAGTTTGTG
* * *
16285762 TTTTCCTTTTTTCTCATTTTT
1 TTTTCCATTTTTCACAATTTT
*
16285783 TTTTTCATTTTTCACAATTTT
1 TTTTCCATTTTTCACAATTTT
16285804 TT
1 TT
16285806 ATTTTTTTTC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.11, C:0.16, G:0.00, T:0.73
Consensus pattern (21 bp):
TTTTCCATTTTTCACAATTTT
Found at i:16285802 original size:22 final size:22
Alignment explanation
Indices: 16285769--16285810 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
16285759 GTGTTTTCCT
*
16285769 TTTTTCTCATTTTTT-TTTTCA
1 TTTTTCACATTTTTTATTTTCA
16285790 TTTTTCACAATTTTTTATTTT
1 TTTTTCAC-ATTTTTTATTTT
16285811 TTTTCTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 7 0.39
23 4 0.22
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.74
Consensus pattern (22 bp):
TTTTTCACATTTTTTATTTTCA
Found at i:16285814 original size:21 final size:19
Alignment explanation
Indices: 16285768--16285815 Score: 51
Period size: 22 Copynumber: 2.4 Consensus size: 19
16285758 TGTGTTTTCC
*
16285768 TTTTTTCTCATTTTTTTTT
1 TTTTTTCACATTTTTTTTT
*
16285787 TCATTTTTCACAATTTTTTATT
1 T--TTTTTCAC-ATTTTTTTTT
16285809 TTTTTTC
1 TTTTTTC
16285816 TTTTCTTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 1 0.04
20 6 0.25
21 7 0.29
22 10 0.42
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTTTCACATTTTTTTTT
Found at i:16290226 original size:17 final size:19
Alignment explanation
Indices: 16290204--16290239 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
16290194 AAAATATAAG
16290204 AGAAAA-AAAACTT-TTAA
1 AGAAAATAAAACTTATTAA
16290221 AGAAAATAAAACTTATTAA
1 AGAAAATAAAACTTATTAA
16290240 GTTAAGCTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 7 0.41
19 4 0.24
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.25
Consensus pattern (19 bp):
AGAAAATAAAACTTATTAA
Found at i:16291053 original size:16 final size:15
Alignment explanation
Indices: 16291032--16291081 Score: 57
Period size: 16 Copynumber: 3.3 Consensus size: 15
16291022 AAGATTTTAT
16291032 TTTTATTTTCTTTAAA
1 TTTTATTTT-TTTAAA
16291048 TTTTA-TTTTTTAAA
1 TTTTATTTTTTTAAA
**
16291062 AATTATTTTTTTTAAA
1 TTTTA-TTTTTTTAAA
16291078 TTTT
1 TTTT
16291082 GAAACCTCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 9 0.32
15 3 0.11
16 16 0.57
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTATTTTTTTAAA
Found at i:16294720 original size:242 final size:241
Alignment explanation
Indices: 16294291--16294780 Score: 687
Period size: 242 Copynumber: 2.0 Consensus size: 241
16294281 ATATATAAAG
* * * * *
16294291 TTCATTTGGATGAACGGTAATGTTAATTTTGATAAGATTAAAACAAAAATAATAAAAAAATTAAA
1 TTCATTTGGATGAACGATAATATTAATTTCGACAAGATTAAAACAAAAATAATAAAAAAACTAAA
* * **
16294356 TATTATGTCAATGAAATTAAAATTAATGATGAAATAAATATTTTAATACAATCATAATAATATTG
66 TATTATGTCAATGAAATTAAAATTAATAATGAAAAAAATATTTTAATACAATCATAATAATATCA
* *
16294421 ATTGTTAACACAAAATCTATTAGAAAAAAATGAGCAGGAGCAGTTCTATTTTTTTTTTTTAACAT
131 ATTGTTAACACAAAATCTATTAGAAAAAAACGAGCAGGAGCAGTTCTA--TTCTTTTTTTAACAT
* *
16294486 AATTGAAACTTTGTAATTGTA-ATTTTAGTTTAGAGAGTTGTATCATC
194 AATTGAAACTATGTAATTGTATATTTTAGTTTAGAGAGTTCTATCATC
* * * * * *
16294533 TTCATTTGGATGCACGATAATATTGATTTCGACAAGATTAAAATAAAAATAATAAGAAAACTGAG
1 TTCATTTGGATGAACGATAATATTAATTTCGACAAGATTAAAACAAAAATAATAAAAAAACTAAA
* *
16294598 TTTTATGTCAGTGAAATTAAAATTAATAAT-AAAAAATATATTTTAATACAATCATAATAATATC
66 TATTATGTCAATGAAATTAAAATTAATAATGAAAAAA-ATATTTTAATACAATCATAATAATATC
* * *
16294662 AATTGTTAACACAAAATCTATTAGAAAATAACGAGCAGGAGTAGTTCTATTCTTTTTTTAATATA
130 AATTGTTAACACAAAATCTATTAGAAAAAAACGAGCAGGAGCAGTTCTATTCTTTTTTTAACATA
* * *
16294727 ATTGAAACTATGTAATTGTATTTTTTTGTTTAGAGAGTTCTGTCATC
195 ATTGAAACTATGTAATTGTATATTTTAGTTTAGAGAGTTCTATCATC
*
16294774 ATCATTT
1 TTCATTT
16294781 AATTTAAAAG
Statistics
Matches: 218, Mismatches: 28, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
240 33 0.15
241 33 0.15
242 152 0.70
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (241 bp):
TTCATTTGGATGAACGATAATATTAATTTCGACAAGATTAAAACAAAAATAATAAAAAAACTAAA
TATTATGTCAATGAAATTAAAATTAATAATGAAAAAAATATTTTAATACAATCATAATAATATCA
ATTGTTAACACAAAATCTATTAGAAAAAAACGAGCAGGAGCAGTTCTATTCTTTTTTTAACATAA
TTGAAACTATGTAATTGTATATTTTAGTTTAGAGAGTTCTATCATC
Found at i:16309756 original size:17 final size:18
Alignment explanation
Indices: 16309717--16309761 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
16309707 AATATGTACT
16309717 ATTAT-AATTA-ATATAC
1 ATTATAAATTATATATAC
16309733 ATT-TAAATTATATATA-
1 ATTATAAATTATATATAC
*
16309749 ATTATAAAATATA
1 ATTATAAATTATA
16309762 AATAGTAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 1 0.04
16 11 0.44
17 13 0.52
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTATAAATTATATATAC
Found at i:16312515 original size:20 final size:20
Alignment explanation
Indices: 16312492--16312529 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
16312482 AATAAAAATG
16312492 AAAATAAAAACAAAAAAGCC
1 AAAATAAAAACAAAAAAGCC
* *
16312512 AAAATTATAACAAAAAAG
1 AAAATAAAAACAAAAAAG
16312530 GAAGTTAAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.11, G:0.05, T:0.11
Consensus pattern (20 bp):
AAAATAAAAACAAAAAAGCC
Found at i:16313152 original size:21 final size:21
Alignment explanation
Indices: 16313128--16313167 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
16313118 TATTTTATTT
16313128 TTATAT-TTATGTATATATATA
1 TTATATATTATGT-TATATATA
*
16313149 TTATATATTTTGTTATATA
1 TTATATATTATGTTATATA
16313168 AAATATGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (21 bp):
TTATATATTATGTTATATATA
Found at i:16313495 original size:30 final size:30
Alignment explanation
Indices: 16313429--16313497 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
16313419 GTATTCATAG
*
16313429 ATGATTAAAATTGCATAAAAAATATAATAGA
1 ATGA-TAAAATTGCATAAAAAATATAATAAA
*
16313460 GTGATAAAATTGCAATAAAAAA-A-AAGTAAA
1 ATGATAAAATTGC-ATAAAAAATATAA-TAAA
16313490 ATGATAAA
1 ATGATAAA
16313498 TATCAATCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
29 2 0.06
30 20 0.61
31 11 0.33
ACGTcount: A:0.61, C:0.03, G:0.12, T:0.25
Consensus pattern (30 bp):
ATGATAAAATTGCATAAAAAATATAATAAA
Found at i:16314634 original size:27 final size:28
Alignment explanation
Indices: 16314604--16314665 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
16314594 GTAATTTACT
**
16314604 AAGATGAGCTC-ATTGGTTAAGGTGGCC
1 AAGATGAGCTCTATTGACTAAGGTGGCC
* *
16314631 AAGATGAGTTCTTTTGACTAAGGTGGCC
1 AAGATGAGCTCTATTGACTAAGGTGGCC
16314659 AAGATGA
1 AAGATGA
16314666 ACTATTTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 10 0.33
28 20 0.67
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (28 bp):
AAGATGAGCTCTATTGACTAAGGTGGCC
Found at i:16324421 original size:88 final size:87
Alignment explanation
Indices: 16324273--16324444 Score: 218
Period size: 88 Copynumber: 2.0 Consensus size: 87
16324263 TTAGGAATAA
* * ** *
16324273 TGACTCAAATCCCATAAGAAATTTGTTTGGGATTTATTAGATATTACTTGATAGATAAGAAGACT
1 TGACTAAAATCCCATAAGAAATTTATTTGAAATTTATTAGATATTACTTGATAGACAAGAAGACT
*
16324338 TATAAAAAAAGAATTCTAAAAG
66 TACAAAAAAAGAATTCTAAAAG
* * * * *
16324360 TGACTAAAATCCTATAAGAGATTTTATTTGAAATTTGTTAGATATTGCTTGATGGACAAGAAGAC
1 TGACTAAAATCCCATAAGA-AATTTATTTGAAATTTATTAGATATTACTTGATAGACAAGAAGAC
* *
16324425 TTACAGAACAAGAATTCTAA
65 TTACAAAAAAAGAATTCTAA
16324445 GAGAAAATGA
Statistics
Matches: 71, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
87 17 0.24
88 54 0.76
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.33
Consensus pattern (87 bp):
TGACTAAAATCCCATAAGAAATTTATTTGAAATTTATTAGATATTACTTGATAGACAAGAAGACT
TACAAAAAAAGAATTCTAAAAG
Found at i:16325476 original size:52 final size:52
Alignment explanation
Indices: 16325386--16325491 Score: 140
Period size: 52 Copynumber: 2.0 Consensus size: 52
16325376 ATGGACAAGA
* *
16325386 TGACTTGTAGAAAAAAAATTCTAAGACAAAATGAATTTTTAATAGGCAAGTT
1 TGACCTGTAGAAAAAAAATTCTAAGACAAAAGGAATTTTTAATAGGCAAGTT
* ** * * *
16325438 TGACCTGTAGAAAAAGAATTCTAAGAGGAAAGGGATTTTTAATATGTAAGTT
1 TGACCTGTAGAAAAAAAATTCTAAGACAAAAGGAATTTTTAATAGGCAAGTT
16325490 TG
1 TG
16325492 TATGCTTATA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.42, C:0.07, G:0.20, T:0.31
Consensus pattern (52 bp):
TGACCTGTAGAAAAAAAATTCTAAGACAAAAGGAATTTTTAATAGGCAAGTT
Found at i:16327535 original size:18 final size:18
Alignment explanation
Indices: 16327512--16327570 Score: 63
Period size: 18 Copynumber: 3.4 Consensus size: 18
16327502 TTCATTTTTA
16327512 AATTGATATCATATTATT
1 AATTGATATCATATTATT
*
16327530 AATTGATAAC-TA--ATT
1 AATTGATATCATATTATT
*
16327545 AAGTGATATCATATTGA-T
1 AATTGATATCATATT-ATT
16327563 AATTGATA
1 AATTGATA
16327571 ATTTAAGTAC
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
15 11 0.33
16 2 0.06
17 2 0.06
18 17 0.52
19 1 0.03
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.42
Consensus pattern (18 bp):
AATTGATATCATATTATT
Found at i:16329821 original size:20 final size:22
Alignment explanation
Indices: 16329796--16329836 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
16329786 TCAATCAGCA
16329796 AAAATATA-T-TAGTTATTGAG
1 AAAATATACTATAGTTATTGAG
16329816 AAAATATACTATAGTTATTGA
1 AAAATATACTATAGTTATTGA
16329837 AAGATAAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.42
21 1 0.05
22 10 0.53
ACGTcount: A:0.46, C:0.02, G:0.12, T:0.39
Consensus pattern (22 bp):
AAAATATACTATAGTTATTGAG
Found at i:16329838 original size:20 final size:19
Alignment explanation
Indices: 16329796--16329838 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
16329786 TCAATCAGCA
16329796 AAAATATATTAGTTATTGAG
1 AAAATATATTAGTTATT-AG
16329816 AAAATATACTATAGTTATT-G
1 AAAATATA-T-TAGTTATTAG
16329836 AAA
1 AAA
16329839 GATAAGCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 12 0.57
21 1 0.05
22 8 0.38
ACGTcount: A:0.49, C:0.02, G:0.12, T:0.37
Consensus pattern (19 bp):
AAAATATATTAGTTATTAG
Found at i:16330295 original size:26 final size:27
Alignment explanation
Indices: 16330249--16330300 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
16330239 TTTATAAAAA
16330249 ATTATATTTATTTATTAATAAAATATT
1 ATTATATTTATTTATTAATAAAATATT
* *
16330276 ATTAT-TTTATTTATTGATAATATAT
1 ATTATATTTATTTATTAATAAAATAT
16330301 AAAATTTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (27 bp):
ATTATATTTATTTATTAATAAAATATT
Found at i:16330763 original size:2 final size:2
Alignment explanation
Indices: 16330756--16330787 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
16330746 ACAACGTCTA
16330756 AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
16330788 GGACTAATGC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16330776 original size:15 final size:15
Alignment explanation
Indices: 16330756--16330784 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
16330746 ACAACGTCTA
16330756 ATATATATATATATT
1 ATATATATATATATT
16330771 ATATATATATATAT
1 ATATATATATATAT
16330785 ATAGGACTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATATATATATATATT
Found at i:16332623 original size:2 final size:2
Alignment explanation
Indices: 16332616--16332643 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
16332606 GCAAGACATA
16332616 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16332644 TCATCTGTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:16333444 original size:3 final size:3
Alignment explanation
Indices: 16333429--16333461 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
16333419 AATTAAATCT
*
16333429 TAA TAA CAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
16333462 AGAAATAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:16334392 original size:32 final size:32
Alignment explanation
Indices: 16334331--16334393 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
16334321 AATTTTGATT
* **
16334331 TTATTATTATGTAATAAATTAATGCATAAATG
1 TTATTATTATATAATAAATTAATAAATAAATG
*
16334363 TTATTATTATATAATAAATTCATAAATAAAT
1 TTATTATTATATAATAAATTAATAAATAAAT
16334394 AATAAATTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (32 bp):
TTATTATTATATAATAAATTAATAAATAAATG
Found at i:16334667 original size:19 final size:20
Alignment explanation
Indices: 16334629--16334669 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
16334619 TTAAAATTAA
*
16334629 TTAAAAATATAATTTTTAGGT
1 TTAAAAAAATAA-TTTTAGGT
16334650 TTAAAAAAATAA-TTTAGGT
1 TTAAAAAAATAATTTTAGGT
16334669 T
1 T
16334670 CGAAAATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
21 11 0.58
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (20 bp):
TTAAAAAAATAATTTTAGGT
Found at i:16335890 original size:26 final size:26
Alignment explanation
Indices: 16335853--16335907 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
16335843 TTCCCAAAAT
*
16335853 CAACCTTATAAGCCCTAGATCTAAGC
1 CAACCTTATAAGCCCTAAATCTAAGC
*
16335879 CAACCTTTTAAGCCCTAAATCTAAGC
1 CAACCTTATAAGCCCTAAATCTAAGC
16335905 CAA
1 CAA
16335908 AAAGCCAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.31, G:0.09, T:0.24
Consensus pattern (26 bp):
CAACCTTATAAGCCCTAAATCTAAGC
Found at i:16336962 original size:13 final size:13
Alignment explanation
Indices: 16336944--16336973 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
16336934 TTATAATGTG
16336944 TTATAGTATAATA
1 TTATAGTATAATA
16336957 TTATAGTATAATA
1 TTATAGTATAATA
16336970 TTAT
1 TTAT
16336974 TGTTGGTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (13 bp):
TTATAGTATAATA
Found at i:16338016 original size:19 final size:19
Alignment explanation
Indices: 16337972--16338025 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
16337962 TTCGTAAGGT
*
16337972 TTTTTTTTCTATTTTCTCTG
1 TTTTTTTT-TATTTTCTCTA
*
16337992 TATTTTTTTATTTTCAT-TA
1 TTTTTTTTTATTTTC-TCTA
16338011 TTTTTTATTTATTTT
1 TTTTTT-TTTATTTT
16338026 ATTTTCAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.13, C:0.07, G:0.02, T:0.78
Consensus pattern (19 bp):
TTTTTTTTTATTTTCTCTA
Found at i:16338115 original size:3 final size:3
Alignment explanation
Indices: 16338107--16338144 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
16338097 CTATTTTTTA
*
16338107 AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
16338145 CATTAAGAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:16348796 original size:51 final size:54
Alignment explanation
Indices: 16348682--16348806 Score: 177
Period size: 51 Copynumber: 2.4 Consensus size: 54
16348672 ATAAAATAGT
*
16348682 TCAAGTTGAAAACCCGAAAGGGTGACTTGGAAACAATGAAAAAAAAAAAAAGAGC
1 TCAAGTTGAAAACCCAAAAGGGTGACTTGGAAACAA-GAAAAAAAAAAAAAGAGC
* *
16348737 TCAAGTTGAAAACCCAAAAGGGTGGCTT-GAAA-AA-AAAAAGAGAAAAAA-AGC
1 TCAAGTTGAAAACCCAAAAGGGTGACTTGGAAACAAGAAAAA-AAAAAAAAGAGC
16348788 TCAAGTTGAAAACCCAAAA
1 TCAAGTTGAAAACCCAAAA
16348807 AAGCAGCTTG
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
51 27 0.41
52 7 0.11
53 2 0.03
54 4 0.06
55 26 0.39
ACGTcount: A:0.54, C:0.14, G:0.20, T:0.13
Consensus pattern (54 bp):
TCAAGTTGAAAACCCAAAAGGGTGACTTGGAAACAAGAAAAAAAAAAAAAGAGC
Found at i:16348816 original size:51 final size:50
Alignment explanation
Indices: 16348720--16348828 Score: 148
Period size: 51 Copynumber: 2.2 Consensus size: 50
16348710 GGAAACAATG
* ** **
16348720 AAAAAAAAAAAAAGAGCTCAAGTTGAAAACCCAAAAGGGTGGCTTGAA-A
1 AAAAAAAAAAAAAAAGCTCAAGTTGAAAACCCAAAAAAGCAGCTTGAACA
16348769 AAAAAAAGAGAAAAAAAGCTCAAGTTGAAAACCCAAAAAAGCAGCTTGAACA
1 AAAAAAA-A-AAAAAAAGCTCAAGTTGAAAACCCAAAAAAGCAGCTTGAACA
16348821 AAAAAAAA
1 AAAAAAAA
16348829 TTTAAGTTGA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
49 7 0.13
50 1 0.02
51 36 0.69
52 8 0.15
ACGTcount: A:0.61, C:0.13, G:0.17, T:0.10
Consensus pattern (50 bp):
AAAAAAAAAAAAAAAGCTCAAGTTGAAAACCCAAAAAAGCAGCTTGAACA
Found at i:16350654 original size:3 final size:3
Alignment explanation
Indices: 16350626--16350749 Score: 151
Period size: 3 Copynumber: 41.3 Consensus size: 3
16350616 TACTATAGTA
* * *
16350626 TAT TA- TAT TAG TGT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
16350673 TAT TAT TAT TAC CAT TAT CAT CAT CAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
16350721 TAT TAT TAT TAT TAT TAT TCTT TAT TAT T
1 TAT TAT TAT TAT TAT TAT T-AT TAT TAT T
16350750 TTGCTTTCCT
Statistics
Matches: 105, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
2 2 0.02
3 101 0.96
4 2 0.02
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:16351042 original size:18 final size:20
Alignment explanation
Indices: 16351001--16351044 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
16350991 GACAAGGTGG
*
16351001 ATTTTGAGGGAACGATTGGT
1 ATTTTGAGGGAAAGATTGGT
16351021 -TTTT-AGGGAAAG-TTGGT
1 ATTTTGAGGGAAAGATTGGT
16351038 ATTTTGA
1 ATTTTGA
16351045 AAAATTTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
17 5 0.24
18 11 0.52
19 5 0.24
ACGTcount: A:0.25, C:0.02, G:0.32, T:0.41
Consensus pattern (20 bp):
ATTTTGAGGGAAAGATTGGT
Found at i:16351758 original size:3 final size:3
Alignment explanation
Indices: 16351752--16351777 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
16351742 AATAATAATA
16351752 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
16351778 AACATTAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:16352387 original size:3 final size:3
Alignment explanation
Indices: 16352379--16352418 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
16352369 CTGTTTTTTA
16352379 AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
16352419 AGAATAAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:16352777 original size:625 final size:638
Alignment explanation
Indices: 16351564--16352820 Score: 1841
Period size: 625 Copynumber: 2.0 Consensus size: 638
16351554 ACCGACCTGT
* *
16351564 GTGTCGACCCAATTCGTTTCGCAATGTTTTCTTTTTCATTTTCTCTTTATTTTTTAATTTTCATT
1 GTGTCGACCCAATCCGTTTCGCAAGGTTTTCTTTTTCATTTTCTCTTTATTTTTTAATTTTCATT
* *
16351629 ATTTTGTATTTTATATTTATTTTATTTTCAATTTCTTTTATCTATTTTACTGATTTTTATTATTT
66 ATTTTATATTTTATATTTATGTTATTTTCAATTTCTTTTATCTATTTTACTGATTTTTATTATTT
*
16351694 GTTTATTTTATGAATATTTTAAAATTCTATGGCTATTTTTTAAATAATAATAATAATAATGATGA
131 GTTTATTTTATAAATATTTTAAAATTCTATGGCTATTTTTTAAATAATAATAATAATAA-GATGA
*
16351759 TGATGATGATGATGATGATAACATTAAGAATAAAGAATAAAAATATAAAAAATTTGAAAAATCTT
195 -GATGA-GATGATGA-GATAACATTAAGAATAAAGAATAAAAATATAAAAAATTTAAAAAATCTT
*
16351824 TTTCAAATAAATTTATGGAATCCACCAAACTATTAGAAAATTTCATAAATCAATTTTCAAAACAT
257 TTTCAAATAAATTTATGGAATCCACCAAACTATTAGAAAATTTCATAAATCAATTTTCAAAAAAT
* * *
16351889 AAAAAAGAAATAAAAAAAATAAAGATTATTTTTATTCTCTCAATTATTAGAGGATTGATTTAAAC
322 AAAAAAGAAATAAAAAAAATAAAGATTATTTTTATCCTCTCAACTATTAGAAGATTGATTTAAAC
*
16351954 GAAGCCCTACCAAACTATTGAAAGATTTAATGAAATCCTCAAAAATTTTTACAAACCTCTTCGTA
387 GAAGCCCTACCAAACTATTGAAAGACTTAATGAAATCCTCAAAAATTTTTACAAACCTCTTCGTA
* * *
16352019 ATAAAATCTCACCAAATTATTAAGAGATCTACTCCAAAGTAAGTTCTACCAAACTATTAGGAGAC
452 ATAAAATCTCACCAAAGTATTAAGAGATCTACTCCAAAATAAGTCCTACCAAACTATTAGGAGAC
* * **
16352084 CTTACTAATTTTTTTGAAATAAAATGAATTAACAAATTCGACAATGGAGCCTCTTCAGAGTAGGA
517 CTTACTAATTTTTTTGAAATAAAATGAATAAACAAATCCGACAATAAAGCCTCTTCAGAGTAGGA
* *
16352149 CACTAGT-TTTCATGAATATACTTGAGGTAAGAAAATTATCTTAAATTGCTAACCCAC
582 CACTAGTCTTT-ATGAATATACCTGAAGTAAGAAAATTATCTTAAATTGCTAACCCAC
** *
16352206 GTGTCGACCTGATCCGTTTCGCAAGGTTTTCTTTTTCATTTTCTCTTTATTTTTTTATTTTCATT
1 GTGTCGACCCAATCCGTTTCGCAAGGTTTTCTTTTTCATTTTCTCTTTATTTTTTAATTTTCATT
* *
16352271 ATTTTATATTTTATATTTATGTTATTTTCAATTTCTTTTATCTGTTTTATTGATTTTTATTATTT
66 ATTTTATATTTTATATTTATGTTATTTTCAATTTCTTTTATCTATTTTACTGATTTTTATTATTT
* *
16352336 TTTTATTTTACTAAATATTTTAAAATTCTATGGCTGTTTTTTAAATAATAATAATAAT-A-AT-A
131 GTTTATTTTA-TAAATATTTTAAAATTCTATGGCTATTTTTTAAATAATAATAATAATAAGATGA
* *
16352398 -AT-A-AT-AT-A-AT-A-A-TAATAATAAAGAATAAAAATTTAAAAAAATTTAAAAAATC-TTT
195 GATGAGATGATGAGATAACATTAAGAATAAAGAATAAAAATAT-AAAAAATTTAAAAAATCTTTT
*
16352453 TCAAATAAATTTATGGAATCCACCAAGCTATTA-AAAATTTCATAAATCAATTTTCAAAAAATAA
259 TCAAATAAATTTATGGAATCCACCAAACTATTAGAAAATTTCATAAATCAATTTTCAAAAAATAA
* * * *
16352517 AAAATAAA-AGAAATAATAAAGATTATTTTTATCCTCTCAACTATTAGAAGATTGATTTAAACTA
324 AAAAGAAATAAAAAAAATAAAGATTATTTTTATCCTCTCAACTATTAGAAGATTGATTTAAACGA
* * * * * *
16352581 AGTCCC-ACTAAACTATTGGAATACTTAATGAAAT-CTTAAAAATTTTTACAAATCTTCTTTGTA
389 AG-CCCTACCAAACTATTGAAAGACTTAATGAAATCCTCAAAAATTTTTACAAA-CCTCTTCGTA
* * ** *
16352644 ATAAAATCTTACCAAAGTATTGAA-AGATCTACTTCAAAATAAGTCCTACCAAGTTATTGGGAGA
452 ATAAAATCTCACCAAAGTATT-AAGAGATCTACTCCAAAATAAGTCCTACCAAACTATTAGGAGA
* * * *
16352708 CCTTGCTAATTTTTTTGAAATAAAATGAATAAACAAATCCGATAATAAAGTCTCTTCAGAGTGGG
516 CCTTACTAATTTTTTTGAAATAAAATGAATAAACAAATCCGACAATAAAGCCTCTTCAGAGTAGG
*
16352773 ACACTAGTCTTTATGAATATTCCTGAAGTAAGAAAATTATCTTAAATT
581 ACACTAGTCTTTATGAATATACCTGAAGTAAGAAAATTATCTTAAATT
16352821 AGTTTCAAAT
Statistics
Matches: 559, Mismatches: 50, Indels: 29
0.88 0.08 0.05
Matches are distributed among these distances:
624 17 0.03
625 235 0.42
626 45 0.08
627 55 0.10
628 17 0.03
629 1 0.00
630 2 0.00
632 1 0.00
633 2 0.00
634 2 0.00
636 1 0.00
637 2 0.00
639 1 0.00
640 2 0.00
642 131 0.23
643 45 0.08
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.40
Consensus pattern (638 bp):
GTGTCGACCCAATCCGTTTCGCAAGGTTTTCTTTTTCATTTTCTCTTTATTTTTTAATTTTCATT
ATTTTATATTTTATATTTATGTTATTTTCAATTTCTTTTATCTATTTTACTGATTTTTATTATTT
GTTTATTTTATAAATATTTTAAAATTCTATGGCTATTTTTTAAATAATAATAATAATAAGATGAG
ATGAGATGATGAGATAACATTAAGAATAAAGAATAAAAATATAAAAAATTTAAAAAATCTTTTTC
AAATAAATTTATGGAATCCACCAAACTATTAGAAAATTTCATAAATCAATTTTCAAAAAATAAAA
AAGAAATAAAAAAAATAAAGATTATTTTTATCCTCTCAACTATTAGAAGATTGATTTAAACGAAG
CCCTACCAAACTATTGAAAGACTTAATGAAATCCTCAAAAATTTTTACAAACCTCTTCGTAATAA
AATCTCACCAAAGTATTAAGAGATCTACTCCAAAATAAGTCCTACCAAACTATTAGGAGACCTTA
CTAATTTTTTTGAAATAAAATGAATAAACAAATCCGACAATAAAGCCTCTTCAGAGTAGGACACT
AGTCTTTATGAATATACCTGAAGTAAGAAAATTATCTTAAATTGCTAACCCAC
Found at i:16354556 original size:13 final size:13
Alignment explanation
Indices: 16354540--16354564 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16354530 TATTATAATA
16354540 CAATATTTTATTG
1 CAATATTTTATTG
16354553 CAATATTTTATT
1 CAATATTTTATT
16354565 AATGTTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (13 bp):
CAATATTTTATTG
Found at i:16363923 original size:20 final size:20
Alignment explanation
Indices: 16363876--16363924 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
16363866 TAATTTACAT
*
16363876 AATAAAAAATAAAAATATTT
1 AATAAAAAATAAAAATATTA
*
16363896 TATGAAAAAAT-AAAATATTAA
1 AAT-AAAAAATAAAAATATT-A
16363917 AATAAAAA
1 AATAAAAA
16363925 TTTACATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 15 0.62
21 9 0.38
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (20 bp):
AATAAAAAATAAAAATATTA
Found at i:16365446 original size:11 final size:11
Alignment explanation
Indices: 16365427--16365468 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
16365417 TCATTAAAAC
*
16365427 TTTCTTTTCCT
1 TTTCCTTTCCT
*
16365438 TTTCCTTTCCC
1 TTTCCTTTCCT
*
16365449 TTTCCTTTCAT
1 TTTCCTTTCCT
16365460 TTTCCTTTC
1 TTTCCTTTC
16365469 GATTGAGCTC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.64
Consensus pattern (11 bp):
TTTCCTTTCCT
Found at i:16365452 original size:22 final size:22
Alignment explanation
Indices: 16365426--16365468 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
16365416 TTCATTAAAA
* *
16365426 CTTTCTTTTCCTTTTCCTTTCC
1 CTTTCCTTTCATTTTCCTTTCC
16365448 CTTTCCTTTCATTTTCCTTTC
1 CTTTCCTTTCATTTTCCTTTC
16365469 GATTGAGCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.02, C:0.35, G:0.00, T:0.63
Consensus pattern (22 bp):
CTTTCCTTTCATTTTCCTTTCC
Found at i:16375823 original size:12 final size:11
Alignment explanation
Indices: 16375798--16375822 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
16375788 ATTTCTTAAG
16375798 AAATTTTTCAA
1 AAATTTTTCAA
16375809 AAATTTTTCAA
1 AAATTTTTCAA
16375820 AAA
1 AAA
16375823 AAAATCTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (11 bp):
AAATTTTTCAA
Found at i:16376264 original size:11 final size:11
Alignment explanation
Indices: 16376248--16376277 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
16376238 TCGACATCTT
16376248 TTTTTTTTTTG
1 TTTTTTTTTTG
*
16376259 TTTTTTCTTTG
1 TTTTTTTTTTG
16376270 TTTTTTTT
1 TTTTTTTT
16376278 AAGCATACTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.03, G:0.07, T:0.90
Consensus pattern (11 bp):
TTTTTTTTTTG
Found at i:16376483 original size:43 final size:43
Alignment explanation
Indices: 16376302--16376790 Score: 349
Period size: 43 Copynumber: 11.1 Consensus size: 43
16376292 TTCATAAAAA
* **
16376302 CTCCTCTAAATAGAGGCTTAACGACTTTGAAAAAAATAAATAAAG
1 CTCCTCTAAATAGAGGCTCAATAACTTTG--AAAAATAAATAAAG
* ** * * * *
16376347 CTCTTCTAAGCAGATGTTCAACAACTTTGGAAAAAAAATAAATAAGG
1 CTCCTCTAAATAGAGGCTCAATAACTTT-G---AAAAATAAATAAAG
* * * **
16376394 TTCATCT-AATCAGAAAGCTCAACGACTTTGAAAAAAATAAATAAAG
1 CTCCTCTAAAT-AG-AGGCTCAATAACTTTG--AAAAATAAATAAAG
* * * * *
16376440 CTCCTTTAAATGGAGGC-CTAATGACTTTGGAAAATAAACAAAG
1 CTCCTCTAAATAGAGGCTC-AATAACTTTGAAAAATAAATAAAG
* * * ** * *
16376483 CTCCTCTAAACATAGGCTTAACGACTTTGGAAAAATAAACAAAC
1 CTCCTCTAAATAGAGGCTCAATAACTTT-GAAAAATAAATAAAG
* * * * *
16376527 CTCGTCTAAATAGAAGTTCAATGACTTTGGAAAATAAATAAAG
1 CTCCTCTAAATAGAGGCTCAATAACTTTGAAAAATAAATAAAG
* * *
16376570 CTCCTCTAAAGAGAGGCTCAACAACTTTGAAAAATAAATAATG
1 CTCCTCTAAATAGAGGCTCAATAACTTTGAAAAATAAATAAAG
* *
16376613 CTCCTCT-AATCAGAGGCTCCATAACTTTGAAAAATAAATAATG
1 CTCCTCTAAAT-AGAGGCTCAATAACTTTGAAAAATAAATAAAG
* *
16376656 CTCATCTAAATAGAGGCTCAATAACTTTGAAAAATAAATAATG
1 CTCCTCTAAATAGAGGCTCAATAACTTTGAAAAATAAATAAAG
* * * * * * *
16376699 CTCCT-TTAATCAAAGGCTCCACAACTTAGGAAAATAAATAATG
1 CTCCTCTAAAT-AGAGGCTCAATAACTTTGAAAAATAAATAAAG
* * * *
16376742 CTCCTCT-AATCAGAGGTTCAACAACTTTTGAAAGATAAATAGAG
1 CTCCTCTAAAT-AGAGGCTCAATAAC-TTTGAAAAATAAATAAAG
16376786 CTCCT
1 CTCCT
16376791 TAACAATCAT
Statistics
Matches: 361, Mismatches: 70, Indels: 27
0.79 0.15 0.06
Matches are distributed among these distances:
42 6 0.02
43 205 0.57
44 57 0.16
45 33 0.09
46 22 0.06
47 26 0.07
48 12 0.03
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.26
Consensus pattern (43 bp):
CTCCTCTAAATAGAGGCTCAATAACTTTGAAAAATAAATAAAG
Found at i:16376651 original size:86 final size:86
Alignment explanation
Indices: 16376302--16376790 Score: 417
Period size: 86 Copynumber: 5.6 Consensus size: 86
16376292 TTCATAAAAA
* * * * * * *
16376302 CTCCTCTAAATAGAGGCTTAACGACTTTGAAAAAAATAAATAAAGCTCTTCTAAGCAGATGTTCA
1 CTCCTCTAAACAGAGGCTCAACAACTTTG--AAAAATAAATAAAGCTCCTCTAATCAGAGGCTCA
* *
16376367 ACAACTTTGGAAAAAAAATAAATAAGG
64 ATAACTTTGG----AAAATAAATAAAG
* * * * * * *
16376394 TTCATCTAATCAGAAAGCTCAACGACTTTGAAAAAAATAAATAAAGCTCCTTTAAAT-GGAGGC-
1 CTCCTCTAAACAG-AGGCTCAACAACTTTG--AAAAATAAATAAAGCTCCTCT-AATCAGAGGCT
* *
16376457 CTAATGACTTTGGAAAATAAACAAAG
62 C-AATAACTTTGGAAAATAAATAAAG
* * * * * * * *
16376483 CTCCTCTAAACATAGGCTTAACGACTTTGGAAAAATAAACAAACCTCGTCTAAAT-AGAAGTTCA
1 CTCCTCTAAACAGAGGCTCAACAACTTT-GAAAAATAAATAAAGCTCCTCT-AATCAGAGGCTCA
*
16376547 ATGACTTTGGAAAATAAATAAAG
64 ATAACTTTGGAAAATAAATAAAG
* * *
16376570 CTCCTCTAAAGAGAGGCTCAACAACTTTGAAAAATAAATAATGCTCCTCTAATCAGAGGCTCCAT
1 CTCCTCTAAACAGAGGCTCAACAACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGCTCAAT
* *
16376635 AACTTTGAAAAATAAATAATG
66 AACTTTGGAAAATAAATAAAG
* * * * * * * *
16376656 CTCATCTAAATAGAGGCTCAATAACTTTGAAAAATAAATAATGCTCCTTTAATCAAAGGCTCCAC
1 CTCCTCTAAACAGAGGCTCAACAACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGCTCAAT
* *
16376721 AACTTAGGAAAATAAATAATG
66 AACTTTGGAAAATAAATAAAG
* * * *
16376742 CTCCTCTAATCAGAGGTTCAACAACTTTTGAAAGATAAATAGAGCTCCT
1 CTCCTCTAAACAGAGGCTCAACAAC-TTTGAAAAATAAATAAAGCTCCT
16376791 TAACAATCAT
Statistics
Matches: 330, Mismatches: 60, Indels: 19
0.81 0.15 0.05
Matches are distributed among these distances:
85 3 0.01
86 142 0.43
87 91 0.28
88 14 0.04
89 21 0.06
92 10 0.03
93 47 0.14
94 2 0.01
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.26
Consensus pattern (86 bp):
CTCCTCTAAACAGAGGCTCAACAACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGCTCAAT
AACTTTGGAAAATAAATAAAG
Found at i:16376703 original size:129 final size:130
Alignment explanation
Indices: 16376302--16376788 Score: 460
Period size: 129 Copynumber: 3.7 Consensus size: 130
16376292 TTCATAAAAA
* * * * * * *
16376302 CTCCTCTAAATAGAGGCTTAACGACTTTGAAAAAAATAAATAAAGCTCTTCTAAGCAGATGTTCA
1 CTCCTCTAAAGAGAGGCTCAACAACTTTG--AAAAATAAATAAAGCTCCTCTAATCAGAGGCTCA
* * *
16376367 ACAACTTTGGAAAAAAAATAAATAAGGTTCATCT-AATCAGAAAGCTCAACGACTTTGAAAAAAA
64 ACAACTTTGG---AAAAATAAATAAAGCTCATCTAAAT-AG-AAGCTCAATGACTTTG--AAAAA
16376431 TAAATAAAG
122 TAAATAAAG
* ** * * * * *
16376440 CTCCTTTAAATG-GAGGC-CTAATGACTTTGGAAAATAAACAAAGCTCCTCTAAACATAGGCTTA
1 CTCCTCTAAA-GAGAGGCTC-AACAACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGCTCA
* * * * * *
16376503 ACGACTTTGGAAAAATAAACAAACCTCGTCTAAATAGAAGTTCAATGACTTTGGAAAATAAATAA
64 ACAACTTTGGAAAAATAAATAAAGCTCATCTAAATAGAAGCTCAATGACTTTGAAAAATAAATAA
16376568 AG
129 AG
* * *
16376570 CTCCTCTAAAGAGAGGCTCAACAACTTTGAAAAATAAATAATGCTCCTCTAATCAGAGGCTCCAT
1 CTCCTCTAAAGAGAGGCTCAACAACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGCTCAAC
* * * *
16376635 AACTTT-GAAAAATAAATAATGCTCATCTAAATAGAGGCTCAATAACTTTGAAAAATAAATAATG
66 AACTTTGGAAAAATAAATAAAGCTCATCTAAATAGAAGCTCAATGACTTTGAAAAATAAATAAAG
* ** * * * * * *
16376699 CTCCTTTAATCAAAGGCTCCACAACTTAGGAAAATAAATAATGCTCCTCTAATCAGAGGTTCAAC
1 CTCCTCTAAAGAGAGGCTCAACAACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGCTCAAC
* * *
16376764 AACTTTTGAAAGATAAATAGAGCTC
66 AACTTTGGAAAAATAAATAAAGCTC
16376789 CTTAACAATC
Statistics
Matches: 288, Mismatches: 55, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
129 111 0.39
130 83 0.29
131 1 0.00
132 14 0.05
133 18 0.06
134 3 0.01
136 35 0.12
138 23 0.08
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (130 bp):
CTCCTCTAAAGAGAGGCTCAACAACTTTGAAAAATAAATAAAGCTCCTCTAATCAGAGGCTCAAC
AACTTTGGAAAAATAAATAAAGCTCATCTAAATAGAAGCTCAATGACTTTGAAAAATAAATAAAG
Found at i:16376874 original size:15 final size:15
Alignment explanation
Indices: 16376854--16376883 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16376844 TCATAATTTG
16376854 AGTTTGAAATTCAAA
1 AGTTTGAAATTCAAA
*
16376869 AGTTTGTAATTCAAA
1 AGTTTGAAATTCAAA
16376884 GACTTCAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.37
Consensus pattern (15 bp):
AGTTTGAAATTCAAA
Found at i:16377111 original size:21 final size:21
Alignment explanation
Indices: 16377085--16377127 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
16377075 ACATTTAAAG
16377085 ATTCAAATTCTGAAGATTCAC
1 ATTCAAATTCTGAAGATTCAC
**
16377106 ATTCAAATTCTGGTGATTCAC
1 ATTCAAATTCTGAAGATTCAC
16377127 A
1 A
16377128 CCCAAAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (21 bp):
ATTCAAATTCTGAAGATTCAC
Found at i:16377133 original size:21 final size:21
Alignment explanation
Indices: 16377088--16377133 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
16377078 TTTAAAGATT
**
16377088 CAAATTCTGAAGATTCACATT
1 CAAATTCTGAAGATTCACACC
**
16377109 CAAATTCTGGTGATTCACACC
1 CAAATTCTGAAGATTCACACC
16377130 CAAA
1 CAAA
16377134 ATTTTAAAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (21 bp):
CAAATTCTGAAGATTCACACC
Found at i:16377538 original size:22 final size:22
Alignment explanation
Indices: 16377505--16377597 Score: 143
Period size: 22 Copynumber: 4.3 Consensus size: 22
16377495 AAATATTCAT
*
16377505 ATTTG-AAACTCAAAGATTCTC
1 ATTTGAAAACTCAAAAATTCTC
**
16377526 ATTTGAAAACTCAACGATTCTC
1 ATTTGAAAACTCAAAAATTCTC
16377548 ATTTGAAAACTCAAAAATTCTC
1 ATTTGAAAACTCAAAAATTCTC
*
16377570 ACTTGAAAACTCAAAAATTCTC
1 ATTTGAAAACTCAAAAATTCTC
16377592 ATTTGA
1 ATTTGA
16377598 GGATTCACAA
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
21 5 0.08
22 61 0.92
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.32
Consensus pattern (22 bp):
ATTTGAAAACTCAAAAATTCTC
Found at i:16378621 original size:27 final size:27
Alignment explanation
Indices: 16378585--16378653 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
16378575 ATTTTCTCTC
*
16378585 TTTTTGCATTTTTTCTC-TTATCTTT-T
1 TTTTTTCATTTTTT-TCATTATCTTTCT
*
16378611 TATTTTTCATTTTTTTCATTTTCTTTCT
1 T-TTTTTCATTTTTTTCATTATCTTTCT
*
16378639 TTTTTTCCTTTTTTT
1 TTTTTTCATTTTTTT
16378654 TTCAATTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
26 3 0.08
27 32 0.86
28 2 0.05
ACGTcount: A:0.07, C:0.14, G:0.01, T:0.77
Consensus pattern (27 bp):
TTTTTTCATTTTTTTCATTATCTTTCT
Found at i:16378627 original size:9 final size:9
Alignment explanation
Indices: 16378613--16378705 Score: 82
Period size: 9 Copynumber: 9.7 Consensus size: 9
16378603 TATCTTTTTA
16378613 TTTTTCATT
1 TTTTTCATT
16378622 TTTTTCATT
1 TTTTTCATT
16378631 TTCTTTC-TT
1 TT-TTTCATT
*
16378640 TTTTTCCTTTT
1 TTTTT-C-ATT
16378651 TTTTTCAATTT
1 TTTTTC-A-TT
16378662 TTTCTTCATT
1 TTT-TTCATT
*
16378672 TTCTTCATTTT
1 TTTTTCA--TT
16378683 TTTTTCA-T
1 TTTTTCATT
16378691 TTTTTCATT
1 TTTTTCATT
16378700 TTTTTC
1 TTTTTC
16378706 CACTTTTTCT
Statistics
Matches: 71, Mismatches: 4, Indels: 18
0.76 0.04 0.19
Matches are distributed among these distances:
8 11 0.15
9 27 0.38
10 9 0.13
11 21 0.30
12 3 0.04
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTTCATT
Found at i:16378637 original size:19 final size:19
Alignment explanation
Indices: 16378615--16378705 Score: 82
Period size: 19 Copynumber: 4.7 Consensus size: 19
16378605 TCTTTTTATT
16378615 TTTCATTTTTTTCATTTTC
1 TTTCATTTTTTTCATTTTC
* *
16378634 TTTC-TTTTTTTCCTTTTTT
1 TTTCATTTTTTT-CATTTTC
16378653 TTTCAATTTTTTCTTCATTTTC
1 TTTC-A-TTTTT-TTCATTTTC
16378675 -TTCATTTTTTTTTCA-TTT-
1 TTTCA--TTTTTTTCATTTTC
16378693 TTTCATTTTTTTC
1 TTTCATTTTTTTC
16378706 CACTTTTTCT
Statistics
Matches: 61, Mismatches: 4, Indels: 16
0.75 0.05 0.20
Matches are distributed among these distances:
17 8 0.13
18 7 0.11
19 20 0.33
20 5 0.08
21 9 0.15
22 10 0.16
23 2 0.03
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTCATTTTTTTCATTTTC
Found at i:16378665 original size:32 final size:30
Alignment explanation
Indices: 16378620--16378695 Score: 68
Period size: 31 Copynumber: 2.5 Consensus size: 30
16378610 TTATTTTTCA
* *
16378620 TTTTTTTCA-TTTTCTTTCTTTTTTTCCTT-
1 TTTTTTTCATTTTTTTTTCATTTTTT-CTTC
*
16378649 TTTTTTTCAATTTTTTCTTCATTTTCTTCATT-
1 TTTTTTTC-ATTTTTTTTTCATTTT-TTC-TTC
16378681 TTTTTTTCATTTTTT
1 TTTTTTTCATTTTTT
16378696 CATTTTTTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
29 8 0.20
30 1 0.03
31 19 0.47
32 12 0.30
ACGTcount: A:0.08, C:0.14, G:0.00, T:0.78
Consensus pattern (30 bp):
TTTTTTTCATTTTTTTTTCATTTTTTCTTC
Found at i:16378670 original size:41 final size:39
Alignment explanation
Indices: 16378608--16378695 Score: 106
Period size: 43 Copynumber: 2.2 Consensus size: 39
16378598 TCTCTTATCT
*
16378608 TTTTATTTTTCATTTTTTTCATTTTCTT-TCTTTTTTTCC
1 TTTT-TTTTTCATTTTTTTCATTTTCTTATCTTTTTTTCA
*
16378647 TTTTTTTTTCAATTTTTTCTTCATTTTCTTCATTTTTTTTTCA
1 TTTTTTTTTC-A-TTTTT-TTCATTTTCTT-ATCTTTTTTTCA
16378690 TTTTTT
1 TTTTTT
16378696 CATTTTTTTC
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
38 6 0.14
39 5 0.12
40 5 0.12
41 11 0.26
43 15 0.36
ACGTcount: A:0.09, C:0.14, G:0.00, T:0.77
Consensus pattern (39 bp):
TTTTTTTTTCATTTTTTTCATTTTCTTATCTTTTTTTCA
Found at i:16378694 original size:50 final size:51
Alignment explanation
Indices: 16378616--16378718 Score: 120
Period size: 50 Copynumber: 2.0 Consensus size: 51
16378606 CTTTTTATTT
* * * *
16378616 TTCATTTTTTTCATTTTCTTTCTTTTTTTCCTTTTTTTTTCAATTTTT-TC
1 TTCATTTTCTTCATTTTCTTTCTATTTTTCCATTTTTTTCCAATTTTTCTC
* * *
16378666 TTCATTTTCTTCATTTT-TTTTTCATTTTTTCATTTTTTTCCACTTTTTCTC
1 TTCATTTTCTTCATTTTCTTTCT-ATTTTTCCATTTTTTTCCAATTTTTCTC
16378717 TT
1 TT
16378719 TTCTCCCATA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
49 4 0.09
50 36 0.82
51 4 0.09
ACGTcount: A:0.09, C:0.17, G:0.00, T:0.74
Consensus pattern (51 bp):
TTCATTTTCTTCATTTTCTTTCTATTTTTCCATTTTTTTCCAATTTTTCTC
Found at i:16378704 original size:11 final size:11
Alignment explanation
Indices: 16378638--16378695 Score: 66
Period size: 11 Copynumber: 5.4 Consensus size: 11
16378628 ATTTTCTTTC
*
16378638 TTTTTTTCCTT
1 TTTTTTTCATT
16378649 TTTTTTTCAATT
1 TTTTTTTC-ATT
*
16378661 TTTTCTTCA--
1 TTTTTTTCATT
*
16378670 TTTTCTTCATT
1 TTTTTTTCATT
16378681 TTTTTTTCATT
1 TTTTTTTCATT
16378692 TTTT
1 TTTT
16378696 CATTTTTTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
9 9 0.22
11 23 0.56
12 9 0.22
ACGTcount: A:0.09, C:0.14, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTTTTCATT
Found at i:16378720 original size:18 final size:18
Alignment explanation
Indices: 16378651--16378714 Score: 56
Period size: 18 Copynumber: 3.3 Consensus size: 18
16378641 TTTTCCTTTT
* *
16378651 TTTTTCAATTTTTTCTTCAT
1 TTTTTC-ATTTTTT-TCCAC
* *
16378671 TTTCTTCATTTTTTTTTCAT
1 TTT-TTCA-TTTTTTTCCAC
16378691 TTTTTCATTTTTTTCCAC
1 TTTTTCATTTTTTTCCAC
16378709 TTTTTC
1 TTTTTC
16378715 TCTTTTCTCC
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
18 15 0.38
19 4 0.10
20 12 0.30
21 9 0.22
ACGTcount: A:0.11, C:0.17, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTCATTTTTTTCCAC
Found at i:16383405 original size:8 final size:8
Alignment explanation
Indices: 16383394--16383448 Score: 60
Period size: 8 Copynumber: 6.9 Consensus size: 8
16383384 TTTTTCTTTT
16383394 TTTTTTAG
1 TTTTTTAG
16383402 TTTTTTTAG
1 -TTTTTTAG
16383411 TTTTTTTAG
1 -TTTTTTAG
*
16383420 TTTTTTAA
1 TTTTTTAG
16383428 TTTTTTA-
1 TTTTTTAG
*
16383435 -TTTTTAA
1 TTTTTTAG
16383442 TTTTTTA
1 TTTTTTA
16383449 TTAACAAAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
6 6 0.14
8 20 0.47
9 17 0.40
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.78
Consensus pattern (8 bp):
TTTTTTAG
Found at i:16383405 original size:9 final size:9
Alignment explanation
Indices: 16383393--16383425 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
16383383 TTTTTTCTTT
16383393 TTTTTTTAG
1 TTTTTTTAG
16383402 TTTTTTTAG
1 TTTTTTTAG
16383411 TTTTTTTAG
1 TTTTTTTAG
16383420 TTTTTT
1 TTTTTT
16383426 AATTTTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.09, C:0.00, G:0.09, T:0.82
Consensus pattern (9 bp):
TTTTTTTAG
Found at i:16383432 original size:18 final size:18
Alignment explanation
Indices: 16383392--16383433 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
16383382 ATTTTTTCTT
*
16383392 TTTTTTTTAGTTTTTTTA
1 TTTTTTTTAGTTTTTTAA
*
16383410 GTTTTTTTAGTTTTTTAA
1 TTTTTTTTAGTTTTTTAA
16383428 TTTTTT
1 TTTTTT
16383434 ATTTTTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.12, C:0.00, G:0.07, T:0.81
Consensus pattern (18 bp):
TTTTTTTTAGTTTTTTAA
Found at i:16383438 original size:14 final size:14
Alignment explanation
Indices: 16383421--16383450 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
16383411 TTTTTTTAGT
16383421 TTTTTAATTTTTTA
1 TTTTTAATTTTTTA
16383435 TTTTTAATTTTTTA
1 TTTTTAATTTTTTA
16383449 TT
1 TT
16383451 AACAAAATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTAATTTTTTA
Found at i:16386036 original size:20 final size:19
Alignment explanation
Indices: 16386008--16386048 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
16385998 TCTGGAAAAA
*
16386008 TTGAGTTTTCTAGATGAACT
1 TTGAATTTT-TAGATGAACT
*
16386028 TTGAATTTTTCGATGAACT
1 TTGAATTTTTAGATGAACT
16386047 TT
1 TT
16386049 TTGATGAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.24, C:0.10, G:0.17, T:0.49
Consensus pattern (19 bp):
TTGAATTTTTAGATGAACT
Found at i:16386138 original size:12 final size:13
Alignment explanation
Indices: 16386115--16386143 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
16386105 GGTTTTCTAG
16386115 TTTTTGATTGAAT
1 TTTTTGATTGAAT
16386128 TTTTTGA-TGAAT
1 TTTTTGATTGAAT
16386140 TTTT
1 TTTT
16386144 CATAAATTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.21, C:0.00, G:0.14, T:0.66
Consensus pattern (13 bp):
TTTTTGATTGAAT
Found at i:16386415 original size:13 final size:12
Alignment explanation
Indices: 16386399--16386468 Score: 65
Period size: 13 Copynumber: 5.8 Consensus size: 12
16386389 CCTTTTTCCA
*
16386399 TTTTCATTTTAT
1 TTTTTATTTTAT
*
16386411 TTTTTGATTTCAT
1 TTTTT-ATTTTAT
16386424 TATTTTATGTTT-T
1 T-TTTTAT-TTTAT
16386437 TATTTTATTTTAT
1 T-TTTTATTTTAT
16386450 TTTTTA-TTTA-
1 TTTTTATTTTAT
16386460 TTTTTATTT
1 TTTTTATTT
16386469 AGTTATTTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
10 6 0.12
11 6 0.12
12 12 0.24
13 20 0.40
14 6 0.12
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (12 bp):
TTTTTATTTTAT
Found at i:16388157 original size:16 final size:16
Alignment explanation
Indices: 16388136--16388171 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
16388126 TTTAAGAAAA
*
16388136 TTTGGATAATTTTATG
1 TTTGGATAATTTTAGG
16388152 TTTGGATAATTTTAGG
1 TTTGGATAATTTTAGG
16388168 TTTG
1 TTTG
16388172 TATTTTTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (16 bp):
TTTGGATAATTTTAGG
Found at i:16388489 original size:24 final size:23
Alignment explanation
Indices: 16388461--16388505 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
16388451 TTTGAATATA
* *
16388461 ATTAAATCTAACTTTATAAATTAC
1 ATTAAACCCAACTTT-TAAATTAC
16388485 ATTAAACCCAACTTTTAAATT
1 ATTAAACCCAACTTTTAAATT
16388506 GTTGGTTATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.44, C:0.16, G:0.00, T:0.40
Consensus pattern (23 bp):
ATTAAACCCAACTTTTAAATTAC
Found at i:16389952 original size:162 final size:161
Alignment explanation
Indices: 16389671--16389964 Score: 448
Period size: 162 Copynumber: 1.8 Consensus size: 161
16389661 CTTAGATATT
* * * * *
16389671 ATTTATGTGTTTTTAAGTCTTTTCGTGTTGTAAAAGGAAAAACTATAAATTTATTAGTATATTTC
1 ATTTATATGTTTTTAAGACTTTTCATGCTGTAAAAGGAAAAACTATAAATTTACTAGTATATTTC
*
16389736 TATTTTAGCAACTTAGATAGATTGAATATATGATATTAAACTTATTCAAATGCTTGAACTTGGCT
66 TATTTTAGCAACTTAGATAGATGGAATATATGATATTAAACTTATTCAAATGCTTGAACTTGGCT
16389801 GCTGTGCTTGATATGTGTGAAAAATATTATG
131 GCTGTGCTTGATATGTGTGAAAAATATTATG
* * *
16389832 ATTTATATGTTTTT-AGAACTTTTCATGCTGTAAAAGGCTAAAACTATAAATTTGCTGGTATATT
1 ATTTATATGTTTTTAAG-ACTTTTCATGCTGTAAAAGG-AAAAACTATAAATTTACTAGTATATT
* *
16389896 TCTATTTTAGCAACTTAGATAGCTGGAATATATGATATTAAACTTA-TCTGAATGCTTGAACTTG
64 TCTATTTTAGCAACTTAGATAGATGGAATATATGATATTAAACTTATTC-AAATGCTTGAACTTG
16389960 GCTGC
128 GCTGC
16389965 CATGTTTGAT
Statistics
Matches: 119, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
160 2 0.02
161 32 0.27
162 85 0.71
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (161 bp):
ATTTATATGTTTTTAAGACTTTTCATGCTGTAAAAGGAAAAACTATAAATTTACTAGTATATTTC
TATTTTAGCAACTTAGATAGATGGAATATATGATATTAAACTTATTCAAATGCTTGAACTTGGCT
GCTGTGCTTGATATGTGTGAAAAATATTATG
Found at i:16392525 original size:16 final size:16
Alignment explanation
Indices: 16392506--16392562 Score: 50
Period size: 16 Copynumber: 3.8 Consensus size: 16
16392496 TTTTTAAATT
16392506 TTTTAATTATTATATA
1 TTTTAATTATTATATA
**
16392522 TTTTAAAAATT-TAT-
1 TTTTAATTATTATATA
*
16392536 TATTAATTATTA-ATA
1 TTTTAATTATTATATA
16392551 TTATTAA-TATTA
1 TT-TTAATTATTA
16392563 GTATTAATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
14 10 0.31
15 9 0.28
16 13 0.41
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTTTAATTATTATATA
Found at i:16393311 original size:3 final size:3
Alignment explanation
Indices: 16393305--16393364 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
16393295 TTTTTATCTA
16393305 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
16393353 TAT TAT TAT TAT
1 TAT TAT TAT TAT
16393365 AGTAAATACT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:16393748 original size:42 final size:42
Alignment explanation
Indices: 16393701--16393860 Score: 100
Period size: 42 Copynumber: 3.8 Consensus size: 42
16393691 AAGTAAAACA
*
16393701 TTAGTGGTGTTTTATA-TTATAAATGCTACTAAATTCTAGAAT
1 TTAGTGGTGTTTTATACTTATAAATGCTACTAAATT-TAAAAT
*** * * *
16393743 TTAGT-GACATTAATAGTAACTAAATGCTACTAAATTTCAAAAT
1 TTAGTGGTGTTTTATACTTA-TAAATGCTACTAAATTT-AAAAT
*
16393786 TTAGCGGTGTTTTATGA--TATAAA--CATCACTAAATTATAAAAT
1 TTAGTGGTGTTTTAT-ACTTATAAATGC-T-ACTAAATT-TAAAAT
* * * *
16393828 TTAATAGTG-TTTATACTTACAAATGCCACTAAA
1 TTAGTGGTGTTTTATACTTATAAATGCTACTAAA
16393861 CAAAGAAAAT
Statistics
Matches: 89, Mismatches: 17, Indels: 24
0.68 0.13 0.18
Matches are distributed among these distances:
40 2 0.02
41 12 0.13
42 42 0.47
43 26 0.29
44 6 0.07
45 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (42 bp):
TTAGTGGTGTTTTATACTTATAAATGCTACTAAATTTAAAAT
Found at i:16395536 original size:2 final size:2
Alignment explanation
Indices: 16395525--16395555 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
16395515 GTAAAACAAA
16395525 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16395556 TGCAATCTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:16397817 original size:2 final size:2
Alignment explanation
Indices: 16397806--16397841 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
16397796 GTTAAACGCG
*
16397806 TA TA -A TA TA TA TA TA TA TA TA TA TA TA AA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
16397842 TATTTTATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:16407296 original size:13 final size:13
Alignment explanation
Indices: 16407278--16407303 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16407268 TCCAATTAAG
16407278 ATTTTATGTATAA
1 ATTTTATGTATAA
16407291 ATTTTATGTATAA
1 ATTTTATGTATAA
16407304 TTAAGATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
ATTTTATGTATAA
Found at i:16407618 original size:46 final size:46
Alignment explanation
Indices: 16407561--16407650 Score: 180
Period size: 46 Copynumber: 2.0 Consensus size: 46
16407551 ATACTAAAAC
16407561 GCTTTTATTGCTCAGGATCAAAAGTAAGATGCCTGAAACAAAATAT
1 GCTTTTATTGCTCAGGATCAAAAGTAAGATGCCTGAAACAAAATAT
16407607 GCTTTTATTGCTCAGGATCAAAAGTAAGATGCCTGAAACAAAAT
1 GCTTTTATTGCTCAGGATCAAAAGTAAGATGCCTGAAACAAAAT
16407651 GTGAATGTAG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (46 bp):
GCTTTTATTGCTCAGGATCAAAAGTAAGATGCCTGAAACAAAATAT
Found at i:16409378 original size:19 final size:19
Alignment explanation
Indices: 16409354--16409390 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
16409344 GTTTGTCTTA
*
16409354 TTAAATTTATGTTTTTGAG
1 TTAAATTTATATTTTTGAG
*
16409373 TTAAATTTTTATTTTTGA
1 TTAAATTTATATTTTTGA
16409391 ATATTTTTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.11, T:0.62
Consensus pattern (19 bp):
TTAAATTTATATTTTTGAG
Found at i:16421611 original size:60 final size:58
Alignment explanation
Indices: 16421546--16421970 Score: 419
Period size: 60 Copynumber: 6.9 Consensus size: 58
16421536 TTATGCAGAA
* *
16421546 AAAATTGATACTTTCAACTTTTCTTCAAAAATTGATTTCTTTGAAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATT-ATTT-TTTGAAAATTTATTTTTAAGG
* *
16421606 AAAATTTATACTTTCAACTTTT-CTCCAAAAA-TACTTCTTTGAAAACTTT-TGTTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCT-CAAAAATTA-TTTTTTGAAAA-TTTAT-TTTT-AAGG
* *
16421666 AAAATTGATACTTTCAATTTTTCCTCAAAAATTGA-TTTTTGAAAACTTTGATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATT-ATTTTTTGAAAA-TTT-ATTTTTAAGG
* * *
16421726 AAAATTGATACATTCAACTTTTCCTCAAAAACTTTTTTTTTGAAATTTTATTTTTAAGGAAAATT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA-TTATTTTTTGAAAATTTATTTTTAA-G------
16421791 G
58 G
* *
16421792 ATAAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTTTTGAAATTTTATTTTTAAGG
1 ---AAAATTGATACTTTCAACTTTTCCTCAAAAA----TTATTTTTTGAAAATTTATTTTTAAGG
* * * *
16421857 AAAATTGATACTTTCAATTTTTTCTCAAAAA-TATTTTTTGGAAACTTTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTT-GAAA-ATTTATTTTTAAGG
*
16421916 AAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTGAAAATTGATTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATT-ATTTTTTGAAAATTTATTTTT
16421971 TTTTGGATTT
Statistics
Matches: 312, Mismatches: 24, Indels: 59
0.79 0.06 0.15
Matches are distributed among these distances:
57 7 0.02
58 14 0.04
59 67 0.21
60 111 0.36
61 24 0.08
62 31 0.10
65 1 0.00
66 1 0.00
69 30 0.10
71 1 0.00
72 25 0.08
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.46
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATTATTTTTTGAAAATTTATTTTTAAGG
Found at i:16421805 original size:69 final size:71
Alignment explanation
Indices: 16421726--16421866 Score: 250
Period size: 72 Copynumber: 2.0 Consensus size: 71
16421716 ATTTTCAAGG
16421726 AAAATTGATACATTCAACTTTTCCTCAAAAA-C-TTTTTTTTTGAAATTTTATTTTTAAGGAAAA
1 AAAATTGATACATTCAACTTTTCCTCAAAAACCTTTTTTTTTTGAAATTTTATTTTTAAGGAAAA
16421789 TTGATA
66 TTGATA
*
16421795 AAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTTTTGAAATTTTATTTTTAAGGAAA
1 AAAATTGATACATTCAACTTTTCCTCAAAAA-CCTTTTTTTTTTGAAATTTTATTTTTAAGGAAA
16421860 ATTGATA
65 ATTGATA
16421867 CTTTCAATTT
Statistics
Matches: 68, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
69 30 0.44
71 1 0.01
72 37 0.54
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.45
Consensus pattern (71 bp):
AAAATTGATACATTCAACTTTTCCTCAAAAACCTTTTTTTTTTGAAATTTTATTTTTAAGGAAAA
TTGATA
Found at i:16421906 original size:131 final size:129
Alignment explanation
Indices: 16421666--16421925 Score: 355
Period size: 131 Copynumber: 2.0 Consensus size: 129
16421656 GTTTTCAAGG
*
16421666 AAAATTGATACTTTCAATTTTTCCTCAAAAATTGATTTTTGAAAACTTTGATTTTCAAGGAAAAT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTGAAAACTTTGATTTTCAAGGAAAAT
* * *
16421731 TGATACATTCAACTTTTCCTCAAAAACTTTTTTTTTGAAATTTTATTTTTAAGGAAAATTGATA
66 TGATACATTCAACTTTTCCTCAAAAACTATTTTTTGGAAATTTTATTTTCAAGGAAAATTGATA
** * *
16421795 AAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTTTTG-AAA-TTTTATTTTTAAGGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA----TTGATTTTTGAAAACTTTGATTTTCAAGGA
* * *
16421858 AAATTGATACTTTCAATTTTTTCTCAAAAA-TATTTTTTGGAAACTTTTATTTTCAAGGAAAATT
62 AAATTGATACATTCAACTTTTCCTCAAAAACTATTTTTTGGAAA-TTTTATTTTCAAGGAAAATT
16421922 GATA
126 GATA
16421926 CTTTCAACTT
Statistics
Matches: 115, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
129 30 0.26
130 11 0.10
131 63 0.55
132 3 0.03
133 8 0.07
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.45
Consensus pattern (129 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTGAAAACTTTGATTTTCAAGGAAAAT
TGATACATTCAACTTTTCCTCAAAAACTATTTTTTGGAAATTTTATTTTCAAGGAAAATTGATA
Found at i:16421972 original size:16 final size:15
Alignment explanation
Indices: 16421943--16421971 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
16421933 CTTTTCCTCA
16421943 AAAATTGATTTTTTG
1 AAAATTGATTTTTTG
16421958 AAAATTGATTTTTT
1 AAAATTGATTTTTT
16421972 TTTGGATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (15 bp):
AAAATTGATTTTTTG
Found at i:16421997 original size:5 final size:5
Alignment explanation
Indices: 16421989--16422060 Score: 60
Period size: 5 Copynumber: 13.8 Consensus size: 5
16421979 TTTATTTAAA
*
16421989 AAAAT AAAAT -AAA- AAAAT AAAAGT GAAAAT AAAA- AAAAGT AAAACA
1 AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAA-T AAAA-T
16422035 AAAAT AAAAGT AAAAT AAAGAT AAAA
1 AAAAT AAAA-T AAAAT AAA-AT AAAA
16422061 GAACATTAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
4 10 0.18
5 22 0.39
6 20 0.36
7 4 0.07
ACGTcount: A:0.78, C:0.01, G:0.07, T:0.14
Consensus pattern (5 bp):
AAAAT
Found at i:16422017 original size:13 final size:13
Alignment explanation
Indices: 16421985--16422010 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16421975 GGATTTTATT
16421985 TAAAAAAATAAAA
1 TAAAAAAATAAAA
16421998 TAAAAAAATAAAA
1 TAAAAAAATAAAA
16422011 GTGAAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
TAAAAAAATAAAA
Found at i:16422022 original size:33 final size:31
Alignment explanation
Indices: 16421985--16422063 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 31
16421975 GGATTTTATT
16421985 TAAAAAAATA-AAATAAAAAAATAAAAGTGAAAA
1 TAAAAAAA-AGAAA-AAAAAAATAAAAGT-AAAA
*
16422018 TAAAAAAAAGTAAAACAAAAATAAAAGTAAAA
1 TAAAAAAAAG-AAAAAAAAAATAAAAGTAAAA
16422050 TAAAGATAAAAGAA
1 TAAA-A-AAAAGAA
16422064 CATTAAATAA
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
32 9 0.22
33 24 0.59
34 8 0.20
ACGTcount: A:0.77, C:0.01, G:0.08, T:0.14
Consensus pattern (31 bp):
TAAAAAAAAGAAAAAAAAAATAAAAGTAAAA
Found at i:16422042 original size:11 final size:10
Alignment explanation
Indices: 16421985--16422053 Score: 50
Period size: 11 Copynumber: 6.4 Consensus size: 10
16421975 GGATTTTATT
16421985 TAAAAAAATAA
1 TAAAAAAA-AA
16421996 -AATAAAAAAA
1 TAA-AAAAAAA
*
16422006 TAAAAGTGAAAA
1 TAAAA--AAAAA
*
16422018 TAAAAAAAAG
1 TAAAAAAAAA
16422028 TAAAACAAAAA
1 TAAAA-AAAAA
*
16422039 TAAAAGTAAAA
1 TAAAA-AAAAA
16422050 TAAA
1 TAAA
16422054 GATAAAAGAA
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
10 14 0.30
11 24 0.51
12 9 0.19
ACGTcount: A:0.78, C:0.01, G:0.06, T:0.14
Consensus pattern (10 bp):
TAAAAAAAAA
Found at i:16422045 original size:17 final size:16
Alignment explanation
Indices: 16421986--16422061 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 16
16421976 GATTTTATTT
16421986 AAAAAAATAAAA-T--
1 AAAAAAATAAAAGTAA
16421999 AAAAAAATAAAAGTGAA
1 AAAAAAATAAAAGT-AA
*
16422016 AATAAAA-AAAAGTAA
1 AAAAAAATAAAAGTAA
16422031 AACAAAAATAAAAGTAA
1 AA-AAAAATAAAAGTAA
*
16422048 AATAAAGATAAAAG
1 AA-AAAAATAAAAG
16422062 AACATTAAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
13 12 0.23
14 1 0.02
15 4 0.08
16 10 0.19
17 26 0.49
ACGTcount: A:0.78, C:0.01, G:0.08, T:0.13
Consensus pattern (16 bp):
AAAAAAATAAAAGTAA
Found at i:16422060 original size:11 final size:11
Alignment explanation
Indices: 16422002--16422053 Score: 54
Period size: 11 Copynumber: 4.7 Consensus size: 11
16421992 ATAAAATAAA
16422002 AAAATAAAAGT
1 AAAATAAAAGT
16422013 GAAAATAAAA--
1 -AAAATAAAAGT
**
16422023 AAAAGTAAAACA
1 AAAA-TAAAAGT
16422035 AAAATAAAAGT
1 AAAATAAAAGT
16422046 AAAATAAA
1 AAAATAAA
16422054 GATAAAAGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
9 4 0.11
10 5 0.14
11 13 0.37
12 13 0.37
ACGTcount: A:0.77, C:0.02, G:0.08, T:0.13
Consensus pattern (11 bp):
AAAATAAAAGT
Found at i:16422962 original size:15 final size:14
Alignment explanation
Indices: 16422922--16422964 Score: 61
Period size: 13 Copynumber: 3.1 Consensus size: 14
16422912 TCAGCCAGAT
*
16422922 AAATAAAAAAAAT-
1 AAATGAAAAAAATC
16422935 AAATGAAAAAAATC
1 AAATGAAAAAAATC
16422949 AAATGAAAATAAATC
1 AAATGAAAA-AAATC
16422964 A
1 A
16422965 GATAAATGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 12 0.44
14 9 0.33
15 6 0.22
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.16
Consensus pattern (14 bp):
AAATGAAAAAAATC
Found at i:16423185 original size:16 final size:17
Alignment explanation
Indices: 16423166--16423203 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
16423156 AAATAAAATT
*
16423166 AAAAATAAA-ATGAAAA
1 AAAAATAAAGAAGAAAA
16423182 AAAAATAAAGAAGAAAA
1 AAAAATAAAGAAGAAAA
16423199 AAAAA
1 AAAAA
16423204 AGAACATAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (17 bp):
AAAAATAAAGAAGAAAA
Found at i:16423189 original size:38 final size:37
Alignment explanation
Indices: 16423097--16423190 Score: 102
Period size: 38 Copynumber: 2.5 Consensus size: 37
16423087 AGCTAAGATA
* *
16423097 AAAAT-AAAAGAAAATATAAAATAATAATAATAATAAT
1 AAAATGAAAAAAAAATA-AAAATAATAATAATAAAAAT
* * *
16423134 AAAATGGAAATAGAATAAAAATAAATAA-AATTAAAAAT
1 AAAATGAAAAAAAAATAAAAAT-AATAATAA-TAAAAAT
16423172 AAAATGAAAAAAAAATAAA
1 AAAATGAAAAAAAAATAAA
16423191 GAAGAAAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
37 12 0.26
38 35 0.74
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.20
Consensus pattern (37 bp):
AAAATGAAAAAAAAATAAAAATAATAATAATAAAAAT
Done.