Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168069.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_318, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35298
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Found at i:1492 original size:26 final size:26
Alignment explanation
Indices: 1463--1513 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1453 GGTCCGATCG
1463 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
1489 TAGATTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
1514 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:2404 original size:26 final size:26
Alignment explanation
Indices: 2364--2416 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2354 TCGGTCTGAT
*
2364 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
2390 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
2416 C
1 C
2417 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:2832 original size:903 final size:898
Alignment explanation
Indices: 1--5958 Score: 7715
Period size: 900 Copynumber: 6.7 Consensus size: 898
* *
1 TTCTGCGTGCCAATGCCATTTTTATGGCTTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACG
1 TTCTGCATGCCAATGCCATTTTTATGGC-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
** * *
66 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGATTTG
65 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
* * * *
131 AGATTTTTAAAAATTTTTTTG-GAGTGAGATTTT-GCCCCAAACTTGCTAGACGTGATCCTTGTA
130 AGATTTTTTAAAATTTTTTCGAAAG-GAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * * * * *
194 CTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCAAAGTTTACAAGATTTTGTGACGATT
193 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
*
259 TGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
258 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
324 TTCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAA
323 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
389 GTACCAGCACCCATTGCACATCATGTGCGTACATCCCCCGGCCCCCCCGATCGTCGAAACCCCAA
388 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGAAACCCCAA
*
454 TGCCGCCGGTCAGGTTCT-C--C-A-G---C-A--ATGGTGCCCAAGCAAAGAAAAATGCGGCAC
452 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCGA-CAAAGAAAAATGC-GCAC
* * * * *
508 CAGCACATGCCCGAGCCCAGCATGTACTGCCACAACCCTCGGTCTGATCTGATCTTTGACTGGGA
515 CAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
*
573 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAGACGAGCG
580 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * * * * ** * * *
638 TGCGAGTGTTCAACCGGCCATA-GGGCAGGATGAGCAAGCTGGGGATCGGTCGGGTCTCTCTTTA
645 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTA
* * * * * *
702 CGTGCTACTAATCCTACTGCTGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAGCTCCG
710 CGTGCTGCCAATCCTGCTGCTACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * *
767 TATGCCTAAGCCTACCGACGAAA-GTAGCGGGCGGGCGAGCGGGTGGGCACTACGCCGGCCAGAA
775 TATGCCTAAGCCAACCGACGAAACG-AGCGGGTGGGCG-GC-GGCGGGCACTACGCCGGCCAGAG
* * *
831 AGATGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAACTTCATAT
837 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
893 TTCTGCATGCCAATACCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
1 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * *** **
958 GAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCATGATTTACAAAACTTTTTGTGGTTC-A
66 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA
* * *
1022 GGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATT
131 -GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
1087 TTTTTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
195 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * * *
1152 AAAAAAGTGTCACCATTTGAAACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
260 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
1217 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGATAGGGGGACAATATAAGGGCCAAGT
325 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
1282 ACCAGCACCCATC-AACATCATGTGCGCACACCCCCTGGCCCCCCGATCGCCGGAACCCCAATGC
390 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCCAATGC
* * * * ** *
1346 CGTCGGTCAGGTTCTCCAGCGATGCTCTGACGATGGTGCTCCAATGAAGAAAAATGAGGCACCAG
455 CGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC-CCGACAAAGAAAAATG-CGCACCAG
* *
1411 CACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCGTAGACTGGGAATG
518 CACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
* * * * *
1476 AACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACGCACAAAACTAGTGTGC
583 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * *
1541 AGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC-AGCCGGGTCCCCCT-TGCA
648 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGA-CCGGGTCCCCCTCTACG
* * * * *
1604 TGCTGCCAATCTTGCTACTGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTA
712 TGCTGCCAATCCTGCTGCTACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
*
1669 TGCCTAAGCCAACCGACGAAACGA-CTGGGTGGGCGGGCGAGCGGGCACTATGCCGGCCAGAGAG
777 TGCCTAAGCCAACCGACGAAACGAGC-GGGTGGGC-GGCG-GCGGGCACTACGCCGGCCAGAGAG
* * * *
1733 ACGGGATGCACAAGCCATGGATCGACATGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
839 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*** * *
1793 TTCTATGTGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGT
1 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * *
1858 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAAACTTTTTGCGGTTTG
66 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG-AAACTTTTTACGGTTCG
* * * *
1922 AGATTTTTTAAAATTTTTTCGAAAGAAGTTTTGGACCCAAACTTGGTAGACATCATCCTTGTATT
130 AGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * * *
1987 TTTGTTGGCATCCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTTACCATTTG
195 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
** *
2052 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGTTGGCAGCAAACCTGTAAAATCTCAAATC
260 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
2117 CTCTTTCAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGT
325 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * *
2182 ACCAGCACCCATCGCACATCATGTGTGCACACATGCCCCCAG-CCCCCTATCATCGGAACCCCAA
390 ACCAGCACCCATCGCACATCATGTGCGCACAC---CCCCCGGCCCCCCGATCGTCGAAACCCCAA
* * *
2246 TGCCGTCGGGCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCTGACAAAGAAAAATGCAGCAC
452 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC-GACAAAGAAAAATGC-GCAC
* * *
2311 CACCACATGTCCGAGCCCAGCATGTGCTGTCGCAACCCTCAGT-TCGGTCTGATCTTAGACTGGG
515 CAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGG
* *
2375 AATGAACTCCGTATGCTTAGACTGGCAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGC
579 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* *
2440 GTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGACCGGGTCCCCCTCT
644 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCT
* ** * *
2505 ACGTGCTACCAATCCTAATGCTACAACCCTCGGTCTGGTCTGGTCTTAGACTGGGAATGAACTCC
709 ACGTGCTGCCAATCCTGCTGCTACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
2570 GTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCAGGCAGGCGGGCACTACGCCGGCCAGAG
774 GTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGC-GGC-GGCGGGCACTACGCCGGCCAGAG
* * * *
2635 AGACAGGATGCGCATGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATAT
837 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * * * *
2697 TTTTTCATGCCGATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGT
1 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * * *
2762 GAAGTTTCATGGCAAGACCACTCATTTTCTA-TTTTCATGATTTTTGAAACTTTTTGCGGTTGGG
66 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA
*
2826 GATTTTTTAAAATTTTTTTGGAAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
131 GATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
** * * *
2890 TTTTTTCACAAGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTAGAAGATTTTGTGACCATTTG
195 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
2955 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATG
260 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * * **
3020 CTCTTTAAGGGGGTGTCAGTTCTCAAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGAAAAGT
325 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
3085 ACAAGCACCTATCGCACATCATGTTCGCACACCCCACCCGGCCCCCCCGATCATCGAAACCCCAA
390 ACCAGCACCCATCGCACATCATGTGCGCACA-CCC-CCCGG-CCCCCCGATCGTCGAAACCCCAA
* * *
3150 TGTCACCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGGA-AAAGAAAAATGCGACA
452 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTG-CCC-GACAAAGAAAAATGCG-CA
* ** **
3214 CCAGCACATGCCTGAGTGCAGCATGTGCTACCGCAACCCTCGGTCT-G---G-TC-----C----
514 CCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
*
3265 -----A------AT-CTTAGACTGGGAATGAACTCCGTTTGCCTAAGTCAACCCACGAAACGAGC
579 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * ** *
3318 GTGCGGGCACTCAGCAGACCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCTCTCT
644 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCT
* * * ** *
3383 ACGTGCTGCCGATCCTGCTGCTGCAACCCTCAGTTTGGT-TCAATCTTAGACTGGGAATGAACTC
709 ACGTGCTGCCAATCCTGCTGCTACAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTC
* * * *
3447 TGTATGCCTAAGCCAATCGACGAAACAAGCGGGTGGGC-G-GGCGGGCTCTACGCCGGCCAGAGA
773 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGCGGCGGGCACTACGCCGGCCAGAGA
* * * * * *
3510 GGCGAGATGCACAAGCTGTGGACCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATAT
838 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
3571 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCACGT
1 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * *
3636 GAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAGCTTTTTACGGTTCGG
66 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA
* * * * *
3701 GATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCAAAAATTGGTAGGCGTGATCCTTGTATTT
131 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * * *
3766 TTTTTGGCATGCACAAAAAAATTTAGCTAAAAAACACAAAGTGAACAAGATTTTGGGACCATTTG
196 TTTTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
3831 AAAAAAGTGTCCCCATTCCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
260 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
3896 CTCTTTAAGGGGGTGTGAGTTCTC-ACGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAG
325 CTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
*
3960 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCTAA
389 TACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTCGAAACCCCAA
* * *
4025 TGCCGCTGGTCAGG---T-------T-CTCCGACGATGGTGCCCTGGCGAAGAAAAAT-CTGGCA
452 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC-GACAAAGAAAAATGC--GCA
* * *
4078 CCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGATCTGGTCCGATCTTAGACTGGG
514 CCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGG
* * * *
4143 AATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCAAAGTAAACCCACGAATCGAGC
579 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * *
4208 GTGTGGGCGCTCAGCCGGCCAGAGGGGCGCGATGCGCAAGCTGGGGGTC-ACCCGGGTCCCCCTC
644 GTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGA-CCGGGTCCCCCTC
* * * * * * *
4272 TACATGCTGTCGATCCTGCTACCACAACCCTCAGTCCGGTCTGATCTTAAACTGGGAATGAACTC
708 TACGTGCTGCCAATCCTGCTGCTACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
*
4337 CGTATGCCTAAGCCAACCGACGAAACGAAC----GGGC-G-GGCGGGCACTACGCCGGCCAGAGA
773 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGCGGCGGGCACTACGCCGGCCAGAGA
*
4396 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTTCATAT
838 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
**
4457 TTCTGGTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
1 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * *
4522 GAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGA
66 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA
* * *
4587 GATTTTTTAAAA-TTTTTC-AGATGAAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGT-TT
131 GATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
4649 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTT
195 TTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
4714 GAAAAAAGTGTCCCCATTTCAGACACTTT--T-GCTACTGGCAGCAAACCTGTAAAATCTCAAAT
259 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
4776 GCTCTTTAAGGGGGTGTGAGTTCT-GAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
324 GCTCTTTAAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
4840 GTACCAGTACCCATCGCACATCATGTGCGCACACTCCTCCGGCCCCCCCGATCGTCGGAACCCCA
388 GTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGG-CCCCCCGATCGTCGAAACCCCA
* * * *
4905 ATGCTGCCGGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCGACGAAGAAAAATGCGACAC
451 ATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCGACAAAGAAAAATGCG-CAC
*
4970 CAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAATCCTCGGTCTGGTCTGATCTTAGACTGGGA
515 CAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
** * * * * *
5035 ATGAACTTTGTATGCTTAGACTGGGAATGAACTCTGTATGCTTAAGCCAACCAACGGAACGAGCG
580 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * *
5100 TGCGGGCACTCAGCCAGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTA
645 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTA
* ** * * * * *
5165 TGTGCTGCTGATCCTGCTGCCACAACTCTTGATCCGGTC-CACTCTTAGACTGGGAATGAACTCC
710 CGTGCTGCCAATCCTGCTGCTACAACCCTCGGTCCGGTCTGA-TCTTAGACTGGGAATGAACTCC
** * *
5229 GTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCGGGTGGGCACTACGTCGGCCAGAG
774 GTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGC-GGC-GGCGGGCACTACGCCGGCCAGAG
*
5294 AGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
837 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
5356 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
1 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * ** *
5421 GAAGTTTCATGGCAGGACGACTCATTTTCTATTTTTCATGATTTTCAAAAGTTTTTACGGTTCGA
66 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA
*
5486 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTCTATTT
131 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * * *
5551 TTTTTGGCATGCACAAAACAATTCAGCTAAAAATTGGAAGTATACAAGATTTTGTGACCATTTGA
196 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
*
5616 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGG
261 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
5681 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCGAATA-AAGGGCCAAGTA
326 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * *
5745 ACAGCACCCATCGTACATCATGTGCGCACA-------GCCCCCCTGATTGTCGGAACCCCAATGC
391 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGTCGAAACCCCAATGC
* ** ***
5803 CGCCTGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCTCCGGTGATGGTGCCCCGGTGAAGAA
455 CGCCGGTCAGGTTCTCC---G--G---C---GA---TGCTCCGACGATGGTG-CCCGACAAAGAA
* * * * *
5868 AAATACGGCACCAGCACATGCCCAAGCCCAACATGTGCTGCCGCAACCCTCGGTCTGGTCTTATC
505 AAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATC
* * *
5933 TTTGGCTGGGAATGAACTCCATATGC
569 TTAGACTGGGAATGAACTCCGTATGC
5959 CTAAGTCAAC
Statistics
Matches: 4444, Mismatches: 490, Indels: 247
0.86 0.09 0.05
Matches are distributed among these distances:
863 5 0.00
864 66 0.01
865 3 0.00
868 1 0.00
869 2 0.00
872 1 0.00
874 171 0.04
875 141 0.03
876 182 0.04
877 1 0.00
878 190 0.04
879 2 0.00
880 1 0.00
881 164 0.04
882 2 0.00
883 1 0.00
884 64 0.01
885 65 0.01
886 215 0.05
889 40 0.01
890 206 0.05
891 597 0.13
892 48 0.01
893 7 0.00
894 36 0.01
895 3 0.00
897 2 0.00
898 1 0.00
899 218 0.05
900 803 0.18
901 62 0.01
902 48 0.01
903 603 0.14
904 380 0.09
905 10 0.00
908 14 0.00
909 88 0.02
910 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA
GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCCAATGCC
GCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCGACAAAGAAAAATGCGCACCAGCAC
ATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAAC
TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTGCT
GCCAATCCTGCTGCTACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGCCAACCGACGAAACGAGCGGGTGGGCGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
Found at i:4161 original size:26 final size:26
Alignment explanation
Indices: 4132--4184 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
4122 CTGGTCCGAT
4132 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
4158 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
4184 C
1 C
4185 CAAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:5059 original size:26 final size:26
Alignment explanation
Indices: 5023--5078 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
5013 CTGGTCTGAT
*
5023 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
5049 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
5075 CTTA
1 CTTA
5079 AGCCAACCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:5842 original size:14 final size:14
Alignment explanation
Indices: 5820--5863 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
5810 CAGGTTCTCC
*
5820 GATGATGCTCCGGT
1 GATGGTGCTCCGGT
5834 GATGGTGCTCCGGT
1 GATGGTGCTCCGGT
*
5848 GATGGTGCCCCGGT
1 GATGGTGCTCCGGT
5862 GA
1 GA
5864 AGAAAAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.11, C:0.23, G:0.41, T:0.25
Consensus pattern (14 bp):
GATGGTGCTCCGGT
Found at i:6439 original size:26 final size:26
Alignment explanation
Indices: 6410--6462 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
6400 CTGGTCCGAT
*
6410 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
6436 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
6462 C
1 C
6463 CTAAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:8192 original size:26 final size:26
Alignment explanation
Indices: 8156--8208 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
8146 CTGGTCCGAT
8156 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
8182 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
8208 C
1 C
8209 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:9090 original size:26 final size:26
Alignment explanation
Indices: 9061--9113 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
9051 CGGGTCCAAT
9061 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
9087 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
9113 C
1 C
9114 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:9193 original size:33 final size:33
Alignment explanation
Indices: 9151--9224 Score: 130
Period size: 33 Copynumber: 2.2 Consensus size: 33
9141 GGGCGCTCAG
*
9151 TCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGA
1 TCGGCCAGAGGGGCAGGATACGTAAGCCGGGGA
*
9184 TCGGCCAGAGGGGCAGGATACGTAAGTCGGGGA
1 TCGGCCAGAGGGGCAGGATACGTAAGCCGGGGA
9217 TCGGCCAG
1 TCGGCCAG
9225 GTCCCCCTCT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.22, C:0.22, G:0.46, T:0.11
Consensus pattern (33 bp):
TCGGCCAGAGGGGCAGGATACGTAAGCCGGGGA
Found at i:10046 original size:26 final size:26
Alignment explanation
Indices: 9995--10047 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
9985 TCGGTCCGAT
* * *
9995 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCATATG
10021 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATGGGAATGAACTCCATATG
10047 C
1 C
10048 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCATATG
Found at i:10923 original size:26 final size:26
Alignment explanation
Indices: 10894--10946 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
10884 CCAGTCCGAT
10894 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10920 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10946 C
1 C
10947 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11804 original size:26 final size:26
Alignment explanation
Indices: 11775--11827 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11765 CCGGTTCAAT
11775 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* * *
11801 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
11827 C
1 C
11828 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:12700 original size:26 final size:26
Alignment explanation
Indices: 12671--12723 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12661 CCGGTCCGAT
*
12671 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
12697 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
12723 C
1 C
12724 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13599 original size:26 final size:26
Alignment explanation
Indices: 13563--13615 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13553 CCAGTCTAAT
13563 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13589 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13615 C
1 C
13616 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14495 original size:26 final size:26
Alignment explanation
Indices: 14466--14518 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14456 CCGGTCCGAT
*
14466 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14492 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14518 C
1 C
14519 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14748 original size:903 final size:902
Alignment explanation
Indices: 7279--18018 Score: 13224
Period size: 899 Copynumber: 12.0 Consensus size: 902
7269 CCGATCCGAT
* * * *
7279 CTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCATGAAATGAGCGTGCGGGGCGTTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCTCAG
* * * * * **
7344 CCTGCCAGAGAGGCGAGATGCACAAGTCGGGGATCGATCGGGTCCCCCTCTGCGCGTCGTAACCC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCT--GCGT-G-----C
* * * ** * *
7409 TCGGTCCGGTCCTG-TCGCCGTAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGGACTCTGT
122 T--G-CCGATCCTGCT-ACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
** * * * * * * *
7473 ATGTGTAAGCCAACTGATG-AA--A-----CGTGTGGGCAGGCGAGCACTACGTCGACCAGAGAG
183 ATGCCTAAGCCAACCGACGAAACGAGCGCGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAG
* * * *
7530 ACGGGATGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTACGCTCATCTTCATATTTCTA
248 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* * *
7595 CATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAGTGGTCCCTTGAGCCTTCACGTGAAGT
313 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
*
7660 TTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCGAAACTTTTTACGG-TTCGGGATT
378 TTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTC-GGATT
* * * *** * *
7724 TTTTACAATTTTTTTGAAAGGAGTTTTGGCCTTGAA-TTGGTAGGCGTGATCCTTGTATTTTTTT
442 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
7788 TGGCATGCACACAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
507 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
7853 AGTGTCCCCATTTCAGGCACTTTAATGGCTACTGGCAGCAATCCTGTAAAATCTCAAATGCTCTT
572 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
7918 CAAGGGGGTGTGAGTTCTTGAGGTCTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAG
637 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * *
7982 CACCGATCACACATCATGTGCGCACACCCCCCGGCCCCTCGATCGCCGAAACCCCAATGTCGTCG
702 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCG
* *
8047 GTCGGGTTCT-CGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACAT
767 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
* * * *
8111 GCCCGTGCCCAGCATGTGCTGCCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTC
832 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
*
8176 CATATG
897 CGTATG
* * * *
8182 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
8247 CGGCCAGAGGGGCGGGATGCGCAGGTCGGGGATCGGCCGGGTCCTCCTCTGCATGTTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** * * *
8312 TAC-AGCCACAACCCTTGGTCTGATCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTA-CCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * *
8376 ACCAACGAAACGAGCGTACGGGCGGTCGGGCGGGCACTACGTCAGCCAAAGAGACGGGATGCACA
195 ACCGACGAAACGAGCGCGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * * *
8441 AGCCATGGAACGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
8506 ATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTGATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
8571 CGACTCATTTTCTATTTTTCACGATTTTTAAAACATTTTGCGG-TTCGGGATTTTTTAAAATTTT
390 CGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTC-GGATTTTTTAAAATTTT
* * *
8635 TTCGAAAGGAGTTTTGGACCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
8700 AGAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCTCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
8765 TCAGACACATTTTAATGGGTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
584 TCAGACAC--TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
8830 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGC
647 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
8895 ACATCATGTGAGCACACCCCCCGAGCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTTAGGTTC
712 ACATCATGTGCGCACACCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
**
8960 TCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC-AGGC
776 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA-GC
** * * * * *
9024 CCAGCATGTGCTATCGCAACCTTCGATCGGGTCCAATCTTAGACTGGGAATGAACTCCATATG
840 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
9087 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCATGAAATGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
9152 CGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGCCAGAGGGGCAGGATACGTAAGTCGGGGA
66 CGGCC--A---G-A-G--G-G---G-C-GGGAT-----------GC--G---C--AAGCCGGGGA
* * * * * * * ** *
9217 TCGGCCAGGTCCCCCTCTACGTGCTACCGATCGTGCTGCCACAATCCTTTGTCTGGTCCAATCTT
98 TCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCGATCTT
* * * *
9282 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAATGAGCG-GCCGGGC-GACGGACG
163 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGCG-CGGGCGGGCGGGCG
* * * **
9345 GGCACTACGTCGGCTAGAG-GACGGGATTCGCAAGCCGTGGATCAATAGGGTGGTACATGGGTTT
227 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * * *
9409 AGGCACATCTTCATATTTCTACATGCCAATGTCATTTTTATGGCATGTAAACTCATACAATGGGC
292 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * * *
9474 CCTTAAGCCTTCACGTGAAGTTTCATAGTAAGATGACTCGTTTTCTATTTTTCAAGATTTTTAAA
357 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAA
* * * *
9539 ACTTTTTGCGG-TTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGCAG
422 ACTTTTTACGGTTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
9603 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAGAAAATTCAGCTAAAAACTCGATGTGTACAAG
486 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
9668 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
551 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
9733 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTATCGAGGTTTGATGGGGGATAGGGGGCC
616 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
9798 AATATAA-GGCCAAATACCAGCACCCATCGTACATCATGTGTGCACACCCCCCCGACTCCCCCGA
681 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC-CCCCCGA
* ** * **
9862 TCGCCGAAACCCCAATGCCACCGGTCAGGTTCTTCGGTGATGCTCCGACGATGGTGCCCCGACGA
744 TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* * * * * *
9927 AGAAAAATGTGGCACAAGCACATCCCCGAGCCCAGCATGTGCTACCGCAACCCTTGGTTCGGTCC
809 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
*
9992 GATCTTAGACTGGGAATGAACTTCGTATG
874 GATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
10021 CTTAGAATGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTGCGTGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * *
10086 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** *
10151 TACTGCTGCAACCCTCAGTCTGGTCTAATCTTAGTCTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
10216 CAGACGAAACGA----GCGGGCGGGGGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGCGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* *
10277 GTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGTCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
10342 TTTTTATGGCTTGTAAATTCATCCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * **
10407 GACTCGTTTTCTATTTTTCAAGATTTTCAAAACTTTTTGTGG-TTCGGGATTTTTTAAAATTTTT
391 GACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTC-GGATTTTTTAAAATTTTT
* * *
10471 TCGAAAGGATTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
455 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
10536 AAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
10601 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
10666 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACGAGCACCAATCACACA
650 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
10731 TCATGTGCGCACACACCCCTGGCCCCCCCGATC-ACGGAACCCCAATGCCGTCGGTCAGGTTCTC
715 TCATGTGCGCACAC-CCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * ** **
10795 CGGCGATGCTCCAACGATGGTGCCCCGATAAAGAAAAATATGGCACCAGCACATGCCCGAGCCCA
778 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
10860 GCATGTGCTGCCACAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
843 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
10920 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGTGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
10985 CGGCCAGAGTGGCGGGATGCGCAAGCCGAGGAT-TGCCTGGGTCCCCCTCTAG-GTGCTGCCGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCC-GGGTCCCCCTCT-GCGTGCTGCCGAT
* * *
11048 CTTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * *
11113 AACCGACGAAACGA--------GCAGGCGGGCGGGCACTATGCCAGCAAGAGAGACGGGATGCGC
194 AACCGACGAAACGAGCGCGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * *
11170 AAGCCGTGGATCG-TAAGGGTGGTAGGTGGCTTTAGGCACGTCTTCATATTTATGCATGCCAATG
259 AAGCCGTGGATCGAT-AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * *
11234 CCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAT
323 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
** * *
11299 GACGACTCATTTTCTATTTTTCAAAATTTTC-AAACCTTTTACCGTTTCGAGATTTTTTAAAATT
388 GACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTCG-GATTTTTTAAAATT
* ** * * *
11363 TTTTCGGAAGGAGTTTCGGCCCCAAACTTGGTAGATATGATCCTTGAATTTTTGTCGGCCTGCAC
452 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * * * *
11428 AAAAACATTGAGCTAAAAACTTGAAGCGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCA
517 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * **
11493 TTCCAGACACTTTAATGGCTACTTGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGCA
582 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * *
11558 TGTGTTCTCGAGGTTTAATGAGGGATAGGGGGCCGATATAAAGGCCAAGTACCAGCACCCATTGC
647 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
11623 ACATCATGTACGCACACCCGCCGGCCCCCCGGATCGCCGAAACCCAAATGCCGTCGGTCAGGTTC
712 ACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
*
11688 T-C--C-A------G-CGA---TGCTCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
776 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * *
11739 CAGCATGTGCTGCTGCAACCCTCAGTCCGGTTCAATCTTAGACTAGGAATAAACTCCGTATG
841 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
11801 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGAGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
11866 CGACCAGAAGGGCGAGATGCACAAGCCAGGGATTGGCCGGGTCCCCCTCTGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
11931 TACTACCACAACCCTC-GATCCT-GTCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCC
131 TGCTACCGCAACCCTCAG-T-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * ** * *
11994 AATCAACGAAAC-A---AGCGGG-GGGCGATC--G--CTACGTCGGCCATAGAGACGGGATGCGT
194 AACCGACGAAACGAGCGCGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * *
12050 AAGCGGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAAGCCAATGC
259 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* ** *
12115 CATTTTTATGGATTGTAAATTTGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTT-ATTGGTAA
324 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA-TGGCAA
* ** *
12179 GATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCGAGATTTTTTAAACTT
388 GACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTCG-GATTTTTTAAAATT
* *
12243 TTTT-TGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAT
452 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-
* *
12307 AAAAAAAATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
516 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
12372 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGT
581 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
12437 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
646 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* ** * *
12502 CACATCATGTGCGCACACTCCCCCCGGCCCCCCCGATCGTCAAAACTCCAATGCCGCCGGTCAGG
711 CACATCATGTGCGCACA--CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
* * ** * * *
12567 TTCT-CTAGCGATGCTCTGGTGATAGTGCCCC-AGCAAAGAAAAATGCAGCACCAGCACATGCCC
773 TTCTCCGA-CGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCC
* *
12630 GAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTA
836 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTA
12695 TG
901 TG
* * *
12697 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * ** *
12762 CGGCCAGAGTGGCGGGATACGTAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGTTGCTAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
12827 TGCTACCGCAACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAAGTCTGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
12892 CCGACGAAATGAACTG-GCGGGCGGGCAGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCA
196 CCGACGAAACGAGC-GCGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * * *
12956 AGCCGTGGACCGGTAAGGTGGTAGGTGGGTTTAGGCACAGCTTCATATTTTTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
13021 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** *
13086 CGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTGTGG-TTCGAGATTTTTTAATATTTT
390 CGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTCG-GATTTTTTAAAATTTT
*
13150 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAA
454 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
13215 AAAAATTCAGCTAAAAACTCGTAGTGCACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
13280 TC-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGT
584 TCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
13344 GAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
648 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
13409 CATCATGTGCGCACACCCCCCGGCCCCCCTGATCGCCGGAACCCCAATGCCGCCGGTCAAG-T-T
713 CATCATGTGCGCACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * ** * * * *
13472 ----C--T-CT-AG-CGATGGTGCCTCGGTGAAGAAAAATACGGCACCGGCACAAGCCCGACCCC
777 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * **
13528 AGCATGTTCTGCCGCAACCCTCGGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATG
842 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
13589 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAACGTGTC-AGCGATCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGCGCTCAG
*** * * ** ** *
13653 CTTACCAGAGGGGCGAGATGCGCAAGCCGAGGATCGGTTGGGTCCCCCTCTGCGTGCTATCGATG
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * ** * * **
13718 TTGCTGCTGCAACCCTCAGCCCAGTCCGATCTTAGACTGGGAATGAACTACATATGTGTAAGCCA
130 CTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
13783 ACCGACGAAACGAGCGGGCGGGCGGGAGGGCGAGCACTACGTCGGCCAGAGAGATGGGATGCGCA
195 ACCGACGAAACGAGCGCGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* *
13848 AGCCGTGAATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
13913 ATTTTTACGGCTTATAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * * *
13978 CGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTTTGGATTTTTTAAAATTATT
390 CGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTCGGATTTTTTAAAATTTTT
* *
14043 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTGTCGGCATGCACAAA
455 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14107 AAATTTC-GTCTAAAAACGCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATT
520 AAAATTCAG-CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
14171 TCAGACACTTTCATGGCTACTAGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
14236 AGTTCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * **
14301 ATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCCGCCCATCAGGTTCT
714 ATCATGTGCGCACA-CCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
** * * * * * *
14366 TTGACGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCGACAGCAGCACATTCTCGAGCCA
777 CCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * *
14431 AGCATGTGCTACCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATTAACTCCGTATG
842 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14492 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAAGGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * ** * ** * * **
14557 CGGCTAGAGGGGCAAGACGCATAAACCGGGGATCAACCGGTTCCCCCTCTGCATGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
14622 TACTACCGCAACCCTCAGTCTAGTCCCATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
14687 CCGACGAAACGAGCGCGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGCGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * *
14752 GCCGTGGGTCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
14817 TTTTTATGGCTTATAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
14882 GACTCGTTTTCTATTTTTCACGATTTTCAAAAGTTTTTACGGTTTTGAATTTCTTAAAATTATTT
391 GACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTCGGATTTTTTAAAATTTTTT
* * * *
14947 CGGAATGACTTTTTGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
456 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
15012 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTT
521 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTT
*
15077 CAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
15142 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTATA
650 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
15207 TCATGTGCGCACAACCCCCCGGCCCCCCGATCGCCGGAACCACAATGTCGTCAGTCAGGTTCTCC
715 TCATGTGCGCAC-ACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * * *
15272 GACAATGCTCCGGCGATGGTGCCCCGAC-AAGGAAAAATGCGGCACCATCGCATGGCCGAGCCTA
779 GACGATGCTCCGACGATGGTGCCCCGACGAA-GAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
15336 GCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
843 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * **
15396 CTTAGATTGGGATTGAACTCTGTATGCCTAAGTCAACACACGAAACGAGCGCGTTGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * *
15461 CGGCCAGAGAGGCGAGATGCGTAAGCCGGGGATCTACCGGGTCCCCCTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
** ** * * *
15526 TGCTGTCGCAACCCTC-GATCCAGTCTGATCTTATACTGGGAATGAACTCCATATGCCTAAGCCA
131 TGCTACCGCAACCCTCAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * *
15590 ACTGACGAAACGAGCGGGCGGGCGGGTAGGCGAGCACTACATCGGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGCGCGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* **
15655 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGGTTGCCAATGCC
260 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
15720 ATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
325 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** * *
15785 CAACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACCGTTCCGGATTTTTTAAAATTTTT
390 CGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTCGGATTTTTTAAAATTTTT
* *
15850 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
455 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
15915 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
520 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * **
15980 TAGACGCTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
585 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
16045 GTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
650 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * **
16110 TCATGTGCGCACA-CCCCCGCCCCCCCGATCGCTGGAATCCTAATGCCATCAATCAGGTTCTCCG
715 TCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
** * * *
16174 GTGATGCTCCAACGATGGTGCCCC-AGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAG
780 ACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
16238 CATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACT-GG---G-A------ATG
844 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * **
16286 ---A-ACT-----T----T--GTATGCCTAAGTCAACCAACGAAACGAGCGTGTGGGCATTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
16336 CGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * * *
16401 TGCTACCACAACAATCAGTCTGGTCTGATCCTAGAATGGAAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
16466 CCAAC-AAA--A-----CGAGCAGACAGGCGGG-----CG--GG-C-G-G-GA----A-GCGCAA
196 CCGACGAAACGAGCGCGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * * * *
16507 GCCGTGGAACGATAGGGTGGCAGGTGGGTTTGGGTACATTTTCATATTTCTGCGTGCCAATGCCA
261 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
16572 TTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTG-AGTTTCATGGCAAGA
326 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG-TGAAGTTTCATGGCAAGA
* * * **
16636 TGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTTTAATTTTT
390 CGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTCGGATTTTTTAAAATTTTT
* * ** * ** * *
16701 TTGAAAGGCA-TTTTGGTGCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGAAATGTATAA
455 TCGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
16765 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATT
519 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
16830 TCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
584 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
16895 AGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
649 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * **
16960 ATCATGTGCGCACACCCCCAGACCCCCCTGATCGCTGGAATCCCAATGCCATCAATCAGGTTCTC
714 ATCATGTGCGCACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
** * * * *
17025 CGGTGATGCTCCGACGATGGTGCCCTGATGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCA
778 CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
** ** *
17090 GCA--TG-TG-C-C-A-TTTCAATCC-GT--GGTC-----C---G---G---TCCG-AT-
843 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
17124 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
17189 CGGCCAGACGGGCGGGATGCGTAAGCCGGGGATCGGCCGGGT--CCC-C--C-T-ATG-C-A---
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * *
17242 TGCTGCCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *** *
17307 CCGACGAAACGAGCGGACGGGCGGGTGGGCGGGTGGGCTCTGCGCCGGCCAGAGAGGTAGGATGT
196 CCGACGAAACGAGC-G-C--GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
* * * *
17372 GCAAGTCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
257 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
*
17437 GCCATTTTTATGGCTTGTAAATTCATA-AATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCA
322 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
17501 AGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTT-GAGATTTTTTAAAAT
387 AGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTCG-GATTTTTTAAAAT
* ** * * * *
17565 TTTTGC-GAAAAACATTTTGGCTCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATGC
451 TTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
17629 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
515 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * **
17694 CATTTTAGACGCTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
580 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
17759 TGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
645 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* ** * * *
17824 GCACATCATATGCGCACACCCCCCGGCCCCCCCGATCGTTGGAATCCCAATGCCATCGATCAGGT
710 GCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGT
* * * * * *
17889 TCTCCGACGATCCTCTGACGATGGTGCCCCAATGAAGAAAAATACGACACCAGCACATGCCCGAG
774 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* ** * * * *
17954 CCCAGCTTGTGCTGCTTCAATCCTCGATCCGATCCGATCTTAGATTGGGAATGAACTCCGTATG
839 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
18018 C
1 C
18019 CTAAGTCAAC
Statistics
Matches: 8597, Mismatches: 1012, Indels: 465
0.85 0.10 0.05
Matches are distributed among these distances:
836 2 0.00
838 1 0.00
839 2 0.00
841 60 0.01
842 5 0.00
843 3 0.00
844 2 0.00
845 2 0.00
846 7 0.00
847 3 0.00
848 2 0.00
849 1 0.00
850 3 0.00
851 438 0.05
852 15 0.00
853 183 0.02
854 1 0.00
856 2 0.00
857 1 0.00
858 3 0.00
859 1 0.00
860 4 0.00
861 1 0.00
862 2 0.00
863 1 0.00
864 1 0.00
866 1 0.00
867 16 0.00
868 444 0.05
869 90 0.01
870 2 0.00
871 2 0.00
872 1 0.00
873 1 0.00
874 4 0.00
875 154 0.02
876 2 0.00
877 1 0.00
878 3 0.00
879 52 0.01
880 378 0.04
881 274 0.03
882 44 0.01
883 6 0.00
884 8 0.00
885 2 0.00
886 4 0.00
887 1 0.00
889 1 0.00
890 4 0.00
891 267 0.03
892 571 0.07
893 17 0.00
894 27 0.00
895 478 0.06
896 262 0.03
897 9 0.00
898 24 0.00
899 972 0.11
900 166 0.02
901 239 0.03
902 139 0.02
903 827 0.10
904 735 0.09
905 744 0.09
906 60 0.01
907 1 0.00
908 2 0.00
910 1 0.00
911 1 0.00
912 1 0.00
914 1 0.00
915 1 0.00
918 1 0.00
919 6 0.00
920 6 0.00
921 1 0.00
924 1 0.00
925 1 0.00
927 1 0.00
928 1 0.00
929 1 0.00
931 2 0.00
932 1 0.00
933 37 0.00
934 307 0.04
935 2 0.00
936 312 0.04
937 22 0.00
938 109 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (902 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGCGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTCGGATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:15406 original size:26 final size:26
Alignment explanation
Indices: 15370--15422 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15360 CCGGTCCGAT
15370 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
15396 CTTAGATTGGGATTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15422 C
1 C
15423 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:18947 original size:12 final size:12
Alignment explanation
Indices: 18926--18967 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
18916 GACGAAACAA
*
18926 GCGGGTGAGCGG
1 GCGGGCGAGCGG
*
18938 ACGGGCGAGCGG
1 GCGGGCGAGCGG
*
18950 GCGGGCGGGCGG
1 GCGGGCGAGCGG
18962 GCGGGC
1 GCGGGC
18968 ACTACGCTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.07, C:0.24, G:0.67, T:0.02
Consensus pattern (12 bp):
GCGGGCGAGCGG
Found at i:18955 original size:4 final size:4
Alignment explanation
Indices: 18934--18967 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
18924 AAGCGGGTGA
* *
18934 GCGG ACGG GCGA GCGG GCGG GCGG GCGG GCGG GC
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GCGG GC
18968 ACTACGCTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.06, C:0.26, G:0.68, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:20939 original size:26 final size:26
Alignment explanation
Indices: 20910--20962 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20900 CCGATCCGAT
* *
20910 CTTAGATTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20936 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20962 C
1 C
20963 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23545 original size:26 final size:26
Alignment explanation
Indices: 23507--23559 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23497 CCGATCCAAT
* *
23507 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23533 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
23559 C
1 C
23560 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:24411 original size:26 final size:26
Alignment explanation
Indices: 24382--24434 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24372 CCGGTCCAAT
*
24382 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
24408 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
24434 C
1 C
24435 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:24972 original size:879 final size:874
Alignment explanation
Indices: 21330--25148 Score: 5105
Period size: 879 Copynumber: 4.3 Consensus size: 874
21320 TCATTTTCTA
* *
21330 TTTTTTGGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTTGCATGCA
1 TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
21395 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* ** *
21460 A-TTTCGAACACTTTTGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGG
131 ATTTTAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
21524 TGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATC
195 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * *
21589 ACACATCATGTGCGCACACCCCCTGACCCGCCCGATCGCTGGAACCCCAATGCCGTCTGGCGATG
260 GCACATCATGTGCGCACACCCCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCATCCGGCGATG
*** * * *
21654 GTGCCCCGGTAAAGAAAAATATGGCGCC-GACACATGCTCGAGCCCAGCATGTGCTGCCGTAACC
324 GTGCCCCGACGAAGAAAAATACGGCACCAG-CACATGCTCGAGCCCAGCATGTGCTGCCGCAACC
* * * * *
21718 CTCGGTCCAGTCTAATCTTAGATTGGGAATGAACTTCGTATGCTTAGGAACCCTGGGAATGAACT
388 CTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTA-G-A--CTAGGAATGAACT
* * * * * * *
21783 CCGTATGCCTAAGTCAAGCCACGAAACGAGCGTACGGGCGCTCAATCGGCCACAAGGGCAGGATA
449 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATG
* * * ** * * * *
21848 CGCAAGCCGAGGATCGGTCG-GGTCCCCTTCTGTGAGCTACCGATCCTGCTACTACAACCCTCGG
514 CGCAAGCCGGGGATCGATCGCAGTCCCC-TCTACGTGCTACCAATCCTGCTGCCACAACCCTCGG
* * *
21912 TCCGGTCTGATCTTAGATTGGGAATAAACTCCGTATGCCTAAGCCAACCGATGAAACGGGCGGAC
578 TCCGGTCTGATCCTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGGGCGGGC
* * *
21977 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGTCGTGGATCGATAGGGTGGTA
643 -GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
22042 GGTTGGTTTAGGCACATCTTCATATTTCTGCATGTGAATGCCATTTTTATGGCTTGTAAATTGAT
707 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCAT
*
22107 ACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
772 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* *
22172 ATTTTTGAAACTTTTTACGGTT-TAGAATTTTTTAAAGT
837 ATTTTTGAAACTTTTTACGGTTCAAG-ATTTTTTAAAAT
*
22210 TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCA
1 TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
22275 CAAAACAATTCAGCTAAAAACTCGAAGTGGACAAGATTTTGTGACCATTTAAAAAAAGTGTCCCC
66 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
22340 ATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTTTTTCAA-GGGG
131 ATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGG
* *
22404 TGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATA
195 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
22469 GCATATCATGTACGCACACCCCCCGGCCCCCCAGATCGTCGGAACCCCAATGCCATCCGACGATG
260 GCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCATCCGGCGATG
* * * * *
22534 ATGCCCCGACGAAGGAAAATGCGGCACCAGCACATTCTTC-AGCCCAGCATGTGCTACCGCAACC
324 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGC-TCGAGCCCAGCATGTGCTGCCGCAACC
** ** * * *
22598 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCACATCCTTAGACTGGGAATGCACTCCGT
388 CTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGT
* * * * * *
22663 ATGCCTAATTCAAGCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCTGGATGCGTA
453 ATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCA
* * * * **
22728 AGCCGGGGATCGA-C-CAAGTCCCCTCTGCATGCTACCAATCTTGTTGCCGTAACCCTCGGTCCG
518 AGCCGGGGATCGATCGC-AGTCCCCTCTACGTGCTACCAATCCTGCTGCCACAACCCTCGGTCCG
* * * *
22791 GTCCGATCTTAG-TCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC---CGGC
582 GTCTGATCCTAGAT-TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGGGCGGGCGGC
* * ** *
22852 GGGCGGGCACTACGCCGGCCAAAGGGACGGGATGCGCAAGCCGTGGATCGATAGGGTAATAGGTT
646 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
22917 GGTTTAGGTACATCTTCATATTTCTGCATGTGAATGCCATTTTTATGGCTTGTAAATTCATACAA
711 GGTTTAGGCACATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
22982 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCATGATTT
776 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* ***
23047 TTGAAACTTTTTATGGTTTGGGATTTTTTAAAAT
841 TTGAAACTTTTTACGGTTCAAGATTTTTTAAAAT
* * *
23081 TTTTTTGGAAGGAGTTTTGGTCCCAATCTTGGTAGACG-CAGTCCTTGTATTTTTGTTGGCATGC
1 TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA-TCCTTGTATTTTTGTTGGCATGC
* * *
23145 ACAGAACAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
65 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
23210 CATTTCAAACACTTTAATGGCTACTGGCAG-AAACCTGTAAAATCTCAAATGCTCTGTAAGGGGG
130 CATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
23274 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
195 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * **
23339 GCACATCATGTACACACACCCACCCAGCCCCCCGATCGCTAGAACCCCAATGCCGTCGGTTAGGT
260 GCACATCATGTGCGCACACCC-CCCGGCCCCCCGATCGCCGGAACCCCAA----------T--G-
** * * *
23404 TCTTCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCAAG
311 ----C--C-A---TCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAG
* * * * *
23469 CCCAACATGTGCTGTCGCAACCCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTCTGTATGC
366 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
23534 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACTAGCATACGGGTGCTCAGCC
431 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAACC
* * * *
23599 GGCCAGAGGGGCGGGATGTGCAAGACGGGGATCGGTCG-GGTCCCCCTCTACGTGCTACCAATCC
496 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGCAGT-CCCCTCTACGTGCTACCAATCC
* * *
23663 TGCTGCCACAACCCTTGGTCCGGTTTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
560 TGCTGCCACAACCCTCGGTCCGGTCTGATCCTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** *
23728 CCGATGAAACGAGCGGGTGGGCGGGCGGGCCCTATGTTGGCCAGAGAGACGGGATGCACAAGCCG
625 CCGATGAAACGGGCGGG-CGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
23793 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGC-TGGCCAATGCCATTT
689 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAT-GTCAATGCCATTT
*
23857 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
753 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** ** * **
23922 TCGTTTTATATTTTTCACGATTTTCAAAACTTTTTGTGGTTCGGAA-A-TTTTCAAACC
818 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC--AAGATTTTTTAAAAT
* *
23979 TTTTTTGGAAGGAATTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC-
1 TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
24043 CTAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCC
66 C-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
24108 CATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
130 CATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * **
24173 TGTGAGTTCTTGAGGTTCGATGAGGGATAGGGGGTTAATATAAGGGCCAAGTACCAGCACCCATC
195 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
24238 GCACATCATGTGCGCACACCCACCCGGCCCCCCGATCGCCGGAACCCCAATGCC-TCCGGCGATG
260 GCACATCATGTGCGCACACCC-CCCGGCCCCCCGATCGCCGGAACCCCAATGCCATCCGGCGATG
* *
24302 GTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCC
324 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCC
*
24367 TCGATCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTA
389 TCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTA
* * *
24432 TGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGACCAGTGGGGCGGGATGCGCAA
454 TGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAA
* ** * * * *
24497 GCCGGGGATCGATCGCATTTTCCTCTACGTGCTACCGATCTTGCTGCCGCAACCCTCGGTCTGGT
519 GCCGGGGATCGATCGCAGTCCCCTCTACGTGCTACCAATCCTGCTGCCACAACCCTCGGTCCGGT
* *
24562 CTGATCCTATATTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAATGAGCGGGCGGGCTG
584 CTGATCCTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG-AA--A-CGGGCGGGC-G
* * ** * *
24627 GCGGGCGGGTACTATGCCGGCCAGAGAGACAAGATGCGCAAGTCATGGATCGATAGGGTGGTAGG
644 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
24692 TGGGTTTAGGCACATCTTCATATTTCTGCAT-TCCAATGCCATTTTTATGGCTTGTAAATTTATA
709 TGGGTTTAGGCACATCTTCATATTTCTGCATGT-CAATGCCATTTTTATGGCTTGTAAATTCATA
*
24756 CAATGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
773 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
24821 TTTTTGAAACTTTTTGA-GGTTCAAGATTTTTTAAAAT
838 TTTTTGAAACTTTTT-ACGGTTCAAGATTTTTTAAAAT
* * **
24858 TTTTTCGAAAGGCA-TTTTGTTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCCA-G
1 TTTTTTGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG-CATG
*
24921 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATGTTGTGACCATTTGAAAAAAGTGTCC
64 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
24986 CCA-TTTCGAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
129 CCATTTTAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
25050 GGTGTGAGTCCTCGAGGTCTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
193 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* *
25115 TCGCACATCATGTGCGCGCACCCCCTTGGCCCCC
258 TCGCACATCATGTGCGCACACCCCC-CGGCCCCC
25149 TGTAGACACC
Statistics
Matches: 2593, Mismatches: 280, Indels: 133
0.86 0.09 0.04
Matches are distributed among these distances:
869 2 0.00
870 124 0.05
871 371 0.14
872 2 0.00
874 1 0.00
875 361 0.14
876 91 0.04
877 2 0.00
878 9 0.00
879 471 0.18
880 381 0.15
881 9 0.00
882 2 0.00
887 2 0.00
889 2 0.00
890 1 0.00
892 1 0.00
893 186 0.07
894 90 0.03
895 1 0.00
897 2 0.00
898 343 0.13
899 139 0.05
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (874 bp):
TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
CACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCATCCGGCGATGGT
GCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTC
GGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATG
CCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGC
CGGGGATCGATCGCAGTCCCCTCTACGTGCTACCAATCCTGCTGCCACAACCCTCGGTCCGGTCT
GATCCTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGGGCGGGCGGCGGGCG
GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTACGGTTCAAGATTTTTTAAAAT
Found at i:25291 original size:3 final size:3
Alignment explanation
Indices: 25265--25309 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
25255 CCTTCTTTTG
25265 TAT T-T TAT GTAT T-T TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
25310 GTATATCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
2 4 0.11
3 28 0.74
4 6 0.16
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:29851 original size:20 final size:20
Alignment explanation
Indices: 29828--29866 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
29818 ATCAACAACG
*
29828 GATGAAAAATGAAAAAAGAT
1 GATGAAAAAAGAAAAAAGAT
*
29848 GATGAAAAAAGAAAGAAGA
1 GATGAAAAAAGAAAAAAGA
29867 AAAAAACAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.23, T:0.10
Consensus pattern (20 bp):
GATGAAAAAAGAAAAAAGAT
Found at i:29896 original size:15 final size:14
Alignment explanation
Indices: 29852--29915 Score: 60
Period size: 14 Copynumber: 4.6 Consensus size: 14
29842 AAAGATGATG
29852 AAAAAAGAAAGAAGA
1 AAAAAAGAAA-AAGA
*
29867 AAAAAA-CAAAAGA
1 AAAAAAGAAAAAGA
29880 AAAAAAGAAGAAAG-
1 AAAAAAGAA-AAAGA
** *
29894 AAATGAGAAAATGA
1 AAAAAAGAAAAAGA
29908 AAAAAAGA
1 AAAAAAGA
29916 GATTCAAATT
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
13 13 0.33
14 16 0.41
15 10 0.26
ACGTcount: A:0.78, C:0.02, G:0.17, T:0.03
Consensus pattern (14 bp):
AAAAAAGAAAAAGA
Found at i:31195 original size:42 final size:42
Alignment explanation
Indices: 31123--31258 Score: 222
Period size: 42 Copynumber: 3.3 Consensus size: 42
31113 ATGATTGTCA
*
31123 AGGAGCAATTTAC-TTTCCAAAGTTC-CGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCCAAAG-TCGTGGTGCCTCTGTTTAG
* *
31164 AGGAGCATTTTACTTTTCCAAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
31206 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
31248 AGGAGCAATTT
1 AGGAGCAATTT
31259 GGTGCCTCTA
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
41 14 0.16
42 74 0.84
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (42 bp):
AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:31261 original size:26 final size:26
Alignment explanation
Indices: 31232--31284 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31222 TCCAAAGTCG
*
31232 TGGTGCCTCTGTTTAGAGGAGCAATT
1 TGGTGCCTCTATTTAGAGGAGCAATT
31258 TGGTGCCTCTATTTAGAGGAGCAATT
1 TGGTGCCTCTATTTAGAGGAGCAATT
31284 T
1 T
31285 ACTTTCCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.21, C:0.15, G:0.28, T:0.36
Consensus pattern (26 bp):
TGGTGCCTCTATTTAGAGGAGCAATT
Found at i:31315 original size:41 final size:41
Alignment explanation
Indices: 31258--31399 Score: 194
Period size: 41 Copynumber: 3.5 Consensus size: 41
31248 AGGAGCAATT
*
31258 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAGTTG
1 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAGTCG
* *
31299 TGGTGGCTCTATTTAGAGGAGCAATTTACTTTCAAAAGTCG
1 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAGTCG
* * * *
31340 TGGTGCCTTTGTGTAGAGGAGCAATTTATTTTCCAAAGTCG
1 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAGTCG
* * *
31381 TTGAGCCTCTGTTTAGAGG
1 TGGTGCCTCTATTTAGAGG
31400 GGCTTTGGTC
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 88 1.00
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.36
Consensus pattern (41 bp):
TGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAGTCG
Found at i:31325 original size:67 final size:68
Alignment explanation
Indices: 31190--31325 Score: 238
Period size: 67 Copynumber: 2.0 Consensus size: 68
31180 TCCAAAGTCG
*
31190 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCA
31255 ATT
66 ATT
* *
31258 TGGTGCCTCTATTTAGAGGAGCAATTTAC-TTTCCAAAGTTGTGGTGGCTCTATTTAGAGGAGCA
1 TGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCA
31322 ATT
66 ATT
31325 T
1 T
31326 ACTTTCAAAA
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
67 36 0.55
68 29 0.45
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (68 bp):
TGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCA
ATT
Found at i:31420 original size:1 final size:1
Alignment explanation
Indices: 31410--31465 Score: 58
Period size: 1 Copynumber: 56.0 Consensus size: 1
31400 GGCTTTGGTC
* * * * * *
31410 AAAAACAAAAAAAAAACAAAAAAACAAAAAAAACAAAAAAAAAACAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
31466 TGACAATGTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:31426 original size:11 final size:11
Alignment explanation
Indices: 31410--31465 Score: 71
Period size: 11 Copynumber: 5.1 Consensus size: 11
31400 GGCTTTGGTC
31410 AAAAACAAAAA
1 AAAAACAAAAA
31421 AAAAACAAAAA
1 AAAAACAAAAA
31432 AACAAA-AAAAA
1 AA-AAACAAAAA
31443 CAAAAA-AAAAA
1 -AAAAACAAAAA
*
31454 CAAAACAAAAA
1 AAAAACAAAAA
31465 A
1 A
31466 TGACAATGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
10 4 0.10
11 31 0.77
12 5 0.12
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAACAAAAA
Found at i:31431 original size:17 final size:16
Alignment explanation
Indices: 31409--31465 Score: 87
Period size: 17 Copynumber: 3.4 Consensus size: 16
31399 GGGCTTTGGT
31409 CAAAAACAAAAAAAAAA
1 CAAAAA-AAAAAAAAAA
31426 CAAAAAAACAAAAAAAA
1 CAAAAAAA-AAAAAAAA
*
31443 CAAAAAAAAAACAAAA
1 CAAAAAAAAAAAAAAA
31459 CAAAAAA
1 CAAAAAA
31466 TGACAATGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
16 16 0.42
17 22 0.58
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (16 bp):
CAAAAAAAAAAAAAAA
Found at i:31687 original size:12 final size:12
Alignment explanation
Indices: 31667--31726 Score: 52
Period size: 12 Copynumber: 4.9 Consensus size: 12
31657 CTTTTGTATT
*
31667 TTATGTATTTTA
1 TTATTTATTTTA
31679 TTATTTATTATTA
1 TTATTTATT-TTA
31692 TTA-TTATTATTA
1 TTATTTATT-TTA
* *
31704 TTATGTATATCT-
1 TTATTTAT-TTTA
31716 TTATTTATTTT
1 TTATTTATTTT
31727 TTTCTGTTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
11 2 0.05
12 27 0.68
13 10 0.25
14 1 0.03
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (12 bp):
TTATTTATTTTA
Found at i:31689 original size:3 final size:3
Alignment explanation
Indices: 31663--31707 Score: 58
Period size: 3 Copynumber: 15.0 Consensus size: 3
31653 CCTTCTTTTG
31663 TAT T-T TAT GTAT T-T TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
31708 GTATATCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
2 4 0.11
3 28 0.74
4 6 0.16
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:31781 original size:20 final size:18
Alignment explanation
Indices: 31747--31790 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
31737 TATTTATATG
31747 TAATTTATTTATATAGTTA
1 TAATTTATTTATATA-TTA
31766 TATATTTA-TTATTATATTA
1 TA-ATTTATTTA-TATATTA
31785 TAATTT
1 TAATTT
31791 TTTTTTCTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 4 0.17
19 10 0.43
20 9 0.39
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TAATTTATTTATATATTA
Found at i:32356 original size:11 final size:11
Alignment explanation
Indices: 32336--32374 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
32326 CCCAGAAACT
*
32336 GGTGATCTTCC
1 GGTGAACTTCC
*
32347 GGTGAACTTCT
1 GGTGAACTTCC
*
32358 GGCGAACTTCC
1 GGTGAACTTCC
32369 GGTGAA
1 GGTGAA
32375 AAAACCCAGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.18, C:0.23, G:0.31, T:0.28
Consensus pattern (11 bp):
GGTGAACTTCC
Found at i:32415 original size:20 final size:20
Alignment explanation
Indices: 32366--32416 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
32356 CTGGCGAACT
*
32366 TCCGGTGAAAAAACCCAGAT
1 TCCGGTGAAAAAACCCAGAA
* *
32386 TTCGATGAAAAAACCCAGAA
1 TCCGGTGAAAAAACCCAGAA
*
32406 TCCGGCGAAAA
1 TCCGGTGAAAA
32417 TCTCACCGGA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.43, C:0.24, G:0.20, T:0.14
Consensus pattern (20 bp):
TCCGGTGAAAAAACCCAGAA
Found at i:32850 original size:17 final size:16
Alignment explanation
Indices: 32816--32855 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
32806 TTAGATTAGG
*
32816 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
32832 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
32849 TTTATTT
1 TTTATTT
32856 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:32892 original size:18 final size:18
Alignment explanation
Indices: 32842--32893 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
32832 TTTATCTTAA
32842 TTTTATTTTTATT-TTTG
1 TTTTATTTTTATTATTTG
*
32859 TTTTACTTTTCT-TTATTTT
1 TTTTA-TTTT-TATTATTTG
32878 TTTTATTTTTATTATT
1 TTTTATTTTTATTATT
32894 CTATTTTCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 6 0.20
18 15 0.50
19 9 0.30
ACGTcount: A:0.13, C:0.04, G:0.02, T:0.81
Consensus pattern (18 bp):
TTTTATTTTTATTATTTG
Found at i:33080 original size:58 final size:58
Alignment explanation
Indices: 32908--33191 Score: 396
Period size: 58 Copynumber: 4.9 Consensus size: 58
32898 TTTCTTTAAA
* * *
32908 TAAAAATCAAAATTTCCAAACAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTTCAAA-AAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
* * * * * * *
32969 TGAAAATCAAAATTTCCAAAAAATATTTTTAGGGAAAAGTTGAAAGTAGCAATTTTCCC
1 TAAAAAT-AAATTTTCAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
33028 TAAAAATAAATTTTCAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
33086 TAAAAATAAATTTTCAAAAAAA-ATATTTTGGGGAAAAGTTGAAAGTATCAA-TTTCCT
1 TAAAAATAAATTTTCAAAAAAACAT-TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
33143 TAAGAAATAAA-TTTCAAAAAAAC-TTTTTGGGGAAAAGTTGAAAGTATCA
1 TAA-AAATAAATTTTCAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCA
33192 TTTCTGAATA
Statistics
Matches: 206, Mismatches: 14, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
56 25 0.12
57 23 0.11
58 100 0.49
59 44 0.21
60 8 0.04
61 6 0.03
ACGTcount: A:0.46, C:0.09, G:0.13, T:0.32
Consensus pattern (58 bp):
TAAAAATAAATTTTCAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:34588 original size:24 final size:25
Alignment explanation
Indices: 34556--34605 Score: 84
Period size: 24 Copynumber: 2.0 Consensus size: 25
34546 CCAGTCCGAT
*
34556 CTTAGACTGGGAATGACT-CGTATG
1 CTTAGACTGGGAATGAATCCGTATG
34580 CTTAGACTGGGAATGAATCCGTATG
1 CTTAGACTGGGAATGAATCCGTATG
34605 C
1 C
34606 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 17 0.71
25 7 0.29
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGGAATGAATCCGTATG
Done.