Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168070.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_319, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35154
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.25
Found at i:988 original size:26 final size:26
Alignment explanation
Indices: 959--1011 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
949 CCGATCTGAT
959 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
985 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
1011 C
1 C
1012 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:1894 original size:26 final size:26
Alignment explanation
Indices: 1858--1910 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1848 CCGGTCCGAT
1858 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
*
1884 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
1910 C
1 C
1911 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:2792 original size:26 final size:26
Alignment explanation
Indices: 2754--2806 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2744 CTGGTCTGAT
*
2754 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
* *
2780 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
2806 C
1 C
2807 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:3355 original size:896 final size:894
Alignment explanation
Indices: 890--5440 Score: 6036
Period size: 896 Copynumber: 5.1 Consensus size: 894
880 AGCCCAGGGT
* * * * *
890 AAAAAAAATGCGACACCAGCACATGCCTGGGTCC-AGCATGTGCACCTGCAACCCTCGGTCCGAT
1 AAAAAAAATGCGGCACCAGCACATGCCCGAG-CCTAGCATGTGCACCCGCAACCCTCGGTCCGGT
954 CTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
65 CTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
1019 AACCCACAAAATGAGCGTGCCGGTGCTCAGCCGACCAGAGGGTTAAGATGCGTAAGCCGGGGATC
130 AACCCACGAAATGAGCATGCGGGCGCTCAGCCGGCCAGAGGG-TAGGATGCGCAAGCCGGGGATC
** * * * * * * * **
1084 GATCAAGTCCCCTTCTGCATGTTGCCGATCCTTCTGCCGCAACCCTCATTCTGGTAGGATCTTAG
194 GATCGGGTCCCC-CCTGCGTGCTGCTGATCCTGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAG
* * * * * * * *
1149 ATTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGTGGACGGGTGGGCTCTACGAC
258 ACTAGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGAGCGGGCGGGCGGGCACTACGCC
* ** * * * * *
1214 GGCCAAAGAGATGGGATGTGCAAGCCATGGATCGATAGGGTGCTAGGTGGGTTCAGGAACATCTT
322 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
1279 CATATTTATACCATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
387 CATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
*
1344 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAGTTTTTACG
452 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
** * *
1409 GTTC-GAGATTTTTTTTGAAATTTTTTCAGAAGGAGTTTT-GAACCCAAACTTGGTAGACGTGAT
517 GTTCAG-GA-TTTTTTAAAAATTTTTTCAAAAGGAGTTTTAG-CCCCAAACTTGGTAGACGTGAT
* * *
1472 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAACTGTACAGGATTTTGT
579 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
*
1537 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAA
644 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
1602 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAA
709 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * * *
1667 GGGCCAAATGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGCCCCCCAATTGCCGGA
774 GGGCCAAGTACCAGCACCCATCGCACATCATGT--GCACACACCCCCCACCCCCCAATCGTCGGA
* * * ** * *
1732 ACCCCAATGCCGTCGGTTAGGTTCTTCGACAATGCTCCGGTGATGGTGCCCTGGGTG-
837 ACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGA
* * *
1789 AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGATCCGGTC
1 AAAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCGGTC
* * *
1854 CGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
66 TGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * ** * * * *
1919 ACCCATGAAACGAGCATGCGGGCGCTCAGTGGGCCAGAGGGGCAAGATGCACAAGCCAGGGATCG
131 ACCCACGAAATGAGCATGCGGGCGCTCAGCCGGCCAGA-GGGTAGGATGCGCAAGCCGGGGATCG
* ** * * * **
1984 ATCGGGTCCACCCCTGCATGCTGCCAATCCTGCTG-TCCCAACCCTCAGCCCGGTCCAATCTTAG
195 ATCGGGTCC-CCCCTGCGTGCTGCTGATCCTGCTGCT-GCAACCCTCAGTCTGGTCTGATCTTAG
* * *
2048 ACTAGGAATGAACTCCGTATACCTAAGCCAACTGACGAAACGAGCGGGCGGGCAGGCACTACGTC
258 ACTAGGAATGAACTCCGTATGCCTAAGCCAAC-GACGAAACGAGCGGGCGGGCGGGCACTACGCC
* * *
2113 GGTCAGAGAGGCGGGATGCGCAAGCCATGGATGGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
322 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
**
2178 CATATTTCTACTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
387 CATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* *
2243 TCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACG
452 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
* *
2308 GTTCAGGATTTTTTAAAAATTCTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
517 GTTCAGGATTTTTTAAAAATTTTTTCAAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCT
* * *
2373 TGTATTTTTGTTGGCATGAACAAAAAAATTCTA-CTAAAAACTAGAAGTGTACAGGATTTTGTGA
582 TGTATTTTTTTTGGCATGCACAAAAAAATTC-AGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
* * *
2437 CCATTTGGAAAAAGTCTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
646 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
2502 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGG
711 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
*
2567 GCCAAGTACCAGCACCCATCGCACATCATGAGCACACACCCCCCACCCCCCAATCGTCGGAACCC
776 GCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCACCCCCCAATCGTCGGAACCC
* ** ** *
2632 CAATGTCGTCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCTCGGGC-A
841 CAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGA
* * ** ** *
2685 AAAAAAAATGCGGCACCTGCACATGCCCGAGCCTAGTATGTGCACTTGCAACCCTCATTCTGGTC
1 AAAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCGGTC
* *
2750 TGATCTTACACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
66 TGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
2815 ACCCACGAAACGAGCTTGCAGGCGCTCAGCCGGCCAGCGAGGCAGGATGTGCAAGCCGGGGATCG
131 ACCCACGAAATGAGCATGCGGGCGCTCAGCCGGCCAGAG-GGTAGGATGCGCAAGCCGGGGATCG
* * * * * * *
2880 GTCGGGTCCCCCCTACGTGCTGGTGATCCTGTTGCTGTAACCCTCAGTTTGGTCTGATCTTTGAC
195 ATCGGGTCCCCCCTGCGTGCTGCTGATCCTGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAGAC
* * * * *
2945 TTGGAATGAAC-CTCGTATGCCTAAGCCAATCGATGAAACGAGCGGGCGGACGGGCGCTACGCCA
260 TAGGAATGAACTC-CGTATGCCTAAGCCAA-CGACGAAACGAGCGGGCGGGCGGGCACTACGCCG
** * *
3009 GTTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTC
323 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * * *
3074 CTATTTATGCCATTCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
388 ATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
3139 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAGCTTTTTACGG
453 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * * *
3204 TTCAGGATTTTTTAAAAATTTTTTCAGAAGGATTTTTAGCTCCAAACTTGGTAGATGTGATCCTT
518 TTCAGGATTTTTTAAAAATTTTTTCAAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTT
*
3269 GTATTTTTTTTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGAC
583 GTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGAC
* * * *
3334 CATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACTGGTAGCAAACCTGTAAGATAT
647 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * * *
3399 CACATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGGGGGATAGGGGGCCAATATAAGGG
712 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
3464 CCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGCCCCCCAATCGTCGAAACCCC
777 CCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCACCCCCCAATCGTCGGAACCCC
* **
3529 AATGCCATCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAACGA
842 AATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGA
* * * * **
3582 GAAAACAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGCACCTGCAACCCTCGGTCTAGT-
1 AAAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCGGTC
* * *
3646 TCGATCTTACATTGGGAATGAACTCTGCATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
66 T-GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
3711 AACCCACGGAATGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGTAGGATGCGCAAACTGTGGATC
130 AACCCACGAAATGAGCATGCGGGCGCTCAGCCGGCCAGA-GGGTAGGATGCGCAAGCCGGGGATC
* * * * * ***
3776 GGTAGGGTCCCCCTTGCGTGCTGCTGATCCTACTACCATAACCCTCAGTCTGGTCTGATCTTAGA
194 GATCGGGTCCCCCCTGCGTGCTGCTGATCCTGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAGA
* * * * *
3841 CTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAAAGAGCGAGCGAGCGGGCATTACGCCA
259 CTAGGAATGAACTCCGTATGCCTAAGCCAAC-GACGAAACGAGCGGGCGGGCGGGCACTACGCCG
* * * **
3906 GCTAGAGAGGCGGGATGCGCAAACCGTGGATCGATATGGTGGTAGGTTAGTTTAGGCACATCTTC
323 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
3971 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
388 ATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
4036 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGGAACTTTTTACGG
453 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* ** * * *
4101 TTCGGGATTTTTT-TTAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGTTAGAAGTGATCCTT
518 TTCAGGATTTTTTAAAAATTTTTTCAAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTT
*
4165 GTATTTTTTTTGGCATGCACAAAAAAATT-ATGCTAAAAACTCGAAGTGTACAGGATTTTTTGAC
583 GTATTTTTTTTGGCATGCACAAAAAAATTCA-GCTAAAAACTCGAAGTGTACAGGATTTTGTGAC
* *
4229 CATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCT
647 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* * **
4294 CAAATGCTCTTTAAGGGGGTATGTGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
712 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
4359 CCAAGTGCCAGCACCCATCGCACATCATGTGCACACACCCCCCACCCCCCCAATCGCCGGAACCC
777 CCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCA-CCCCCCAATCGTCGGAACCC
** * * * *
4424 CAATGCCACCGGTCAGGTTGTCTGGCGATGCTCCGACGATGGTGCCCCAGGCGA
841 CAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGA
* ** * * * *
4478 AAAATAATATGATG--CCAGCACTTGCCCGAGCCCATCATGTGCACCCACAA----C---CC--T
1 AAAA-AAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCGGT
* * *
4532 CT-A--TT----T-GG--T----T-CG-AT-CTTACACTAGAAATGAACTCCGTATGCCTAAGTC
65 CTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
4580 AACCCACGAAATGAGCATGCGGGCGCTCAGCCGGCCAAAGGGTAGGAGGCACAAACTGAGGATCG
130 AACCCACGAAATGAGCATGCGGGCGCTCAGCCGGCCAGAGGGTAGGATGCGCAAGCCGGGGATCG
**
4645 ATCGGGTCCCCCCTGCGTGCTGCTGATCCTGCTGCTGCAACCCTCAGTCCAGTCTGATCTTAGAC
195 ATCGGGTCCCCCCTGCGTGCTGCTGATCCTGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAGAC
* * *
4710 TAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGACACTACGTCGG
260 TAGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGG
* * *
4775 CCAGAGAGGCGGAATGCGCAAGCCGAGGATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
324 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* * *
4840 TATTTCTACCATACCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTC
389 TATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
4905 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTGCATGATTTTTGAAACTTTTTACGGT
454 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * *
4970 TCGGGATTTTTTTAAAATTTTTTCAAAAGGCGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTG
519 TCAGGATTTTTTAAAAATTTTTTCAAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTG
*
5035 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAGGATTTTGTGACCA
584 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
* *
5100 TTTGAAAAAAATGTCCACATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
649 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
5165 AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
714 AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
** * * ** *
5230 AAGTACCAGCACCCAT-GCACATCATGTGTGCACA-GCCCCACGCCCCTAATCGTTAGAACCCAA
779 AAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCAC-CCCCCAATCGTCGGAACCCCA
* * * * *
5293 ATGCCG-CTGGTCAGGTTCTTCGACGATGTTCCGACGATGGTGCCTCGAGCGG
843 ATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGA
* ** * * * * *
5345 AAAAATAATATGGCACCAGCACATGCTCGAGCCTAGCATGTGCACTCACAAGCCTCGGTCGGGTC
1 AAAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCGGTC
* *
5410 TGATCTTACAATGGGAATGAACTCTGTATGC
66 TGATCTTACACTGGGAATGAACTCCGTATGC
5441 CTAAGTCAAC
Statistics
Matches: 3214, Mismatches: 381, Indels: 119
0.87 0.10 0.03
Matches are distributed among these distances:
866 6 0.00
867 65 0.02
868 373 0.12
869 310 0.10
870 3 0.00
871 1 0.00
872 2 0.00
875 1 0.00
876 1 0.00
877 3 0.00
878 3 0.00
879 1 0.00
880 2 0.00
883 2 0.00
884 1 0.00
885 3 0.00
886 1 0.00
887 2 0.00
888 1 0.00
891 2 0.00
892 1 0.00
893 2 0.00
894 3 0.00
895 584 0.18
896 645 0.20
897 472 0.15
898 267 0.08
899 451 0.14
900 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
AAAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCCGGTC
TGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAATGAGCATGCGGGCGCTCAGCCGGCCAGAGGGTAGGATGCGCAAGCCGGGGATCGA
TCGGGTCCCCCCTGCGTGCTGCTGATCCTGCTGCTGCAACCCTCAGTCTGGTCTGATCTTAGACT
AGGAATGAACTCCGTATGCCTAAGCCAACGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCC
AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
AGGATTTTTTAAAAATTTTTTCAAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTA
TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCGCACATCATGTGCACACACCCCCCACCCCCCAATCGTCGGAACCCCAATG
CCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGA
Found at i:5896 original size:720 final size:723
Alignment explanation
Indices: 4857--6155 Score: 2054
Period size: 720 Copynumber: 1.8 Consensus size: 723
4847 ACCATACCAA
* *
4857 TGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCATGTGAAGTTTCATGGC
1 TGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCATGGC
* ** *
4922 AAGACGACTCGTTTTCTATTTTGCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAA
66 AAGACGACTCGTTTTCTATTTTGCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAA
*
4987 TTTTTTCAAAAGGCGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
131 TTTTTTCAAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
5052 ACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCA
196 ACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCA
*
5117 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
261 CATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* ** *
5182 TGTGAGTTCTTGAGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT-
326 TGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATC
* * * * *
5246 GCACATCATGTGT-GCACAGCCC-C-ACG-CCCCTAATCGTTAGAACCCAAATGCCGCTGGTCAG
391 GCACAACATGT-TCGCACACCCCTCGACGCCCCCCAATCGTCAGAACCCAAATGCCGCCGGTCAG
* * * * *
5307 GTTCTTCGACGATGTTCCGA-CGATGGTGCCTCGAGCGGAAAAATAATATGGCACCAGCACATG-
455 GTTCTCCGACGATGCT-CGAGCGATGGTGCCCCGAGC-AAAAAAAAATATGGCACCAGCACATGC
* * * * *
5370 CTCGAGCCTAGCATGTGCACTCACAAGCCTCGGTCGGGTCTGATCTTACAATGGGAATGAACTCT
518 CT-GAGCCCAGCATGTGCACCCACAACCCTCGGTCGGGTCCGATCCTACAATGGGAATGAACTCT
5435 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTAGGATGCG
582 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTAGGATGCG
5500 CAAGCCGGAGATAGGCCGGGTCCCCCCTATGTGCTGTCGATCCTGCTACCGGAACCCTCAATCCG
647 CAAGCCGGAGATAGGCCGGGTCCCCCCTATGTGCTGTCGATCCTGCTACCGGAACCCTCAATCCG
5565 GTCTGATCCTGT
712 GTCTGATCCTGT
5577 TGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCATGGC
1 TGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCATGGC
** * *
5642 AAGACGACTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTTTCGGTTTGGGATTTTTTAAAAA
66 AAGACGACTCGTTTTCTATTTTGCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAA
* * * * *
5707 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGTTAGATGTGATCCTTTTATTTTTTTTGGCATGC
131 TTTTTTCAAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
* * *
5772 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
196 ACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCA
5837 CATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
261 CATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
5902 TGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATC
326 TGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATC
* * * * *
5967 GCACAACATGTTCGCACCCCCCTCGCCGCCCCCCAATCGTCAGAACCCCAATGCTGCCGGTCAGT
391 GCACAACATGTTCGCACACCCCTCGACGCCCCCCAATCGTCAGAACCCAAATGCCGCCGGTCAGG
** * *
6032 TTCTCCGGTGATGCTCTAGCGATGGTGCCCCGAGCAAAAAAAAATGTGGCACCAGCACATGCCTG
456 TTCTCCGACGATGCTCGAGCGATGGTGCCCCGAGCAAAAAAAAATATGGCACCAGCACATGCCTG
* * *
6097 AGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCCTACATTGGGAATGAACT
521 AGCCCAGCATGTGCACCCACAACCCTCGGTCGGGTCCGATCCTACAATGGGAATGAACT
6156 TCATATGCTT
Statistics
Matches: 521, Mismatches: 51, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
720 366 0.70
721 17 0.03
722 1 0.00
723 79 0.15
724 58 0.11
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.28
Consensus pattern (723 bp):
TGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCATGGC
AAGACGACTCGTTTTCTATTTTGCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAA
TTTTTTCAAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
ACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCA
CATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTCGAGGATTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATC
GCACAACATGTTCGCACACCCCTCGACGCCCCCCAATCGTCAGAACCCAAATGCCGCCGGTCAGG
TTCTCCGACGATGCTCGAGCGATGGTGCCCCGAGCAAAAAAAAATATGGCACCAGCACATGCCTG
AGCCCAGCATGTGCACCCACAACCCTCGGTCGGGTCCGATCCTACAATGGGAATGAACTCTGTAT
GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGTAGGATGCGCAAG
CCGGAGATAGGCCGGGTCCCCCCTATGTGCTGTCGATCCTGCTACCGGAACCCTCAATCCGGTCT
GATCCTGT
Found at i:12418 original size:26 final size:26
Alignment explanation
Indices: 12382--12434 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
12372 CTGGTCGGAT
12382 CTTACACTAGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
* *
12408 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
12434 C
1 C
12435 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:12530 original size:25 final size:25
Alignment explanation
Indices: 12482--12530 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
12472 CCGGCCAGAG
*
12482 GGGCAGGATGCACAAGCCGGGGATC
1 GGGCAGGATGCACAAGCCAGGGATC
* *
12507 GGGCAGGATGCGCAAGCCATGGAT
1 GGGCAGGATGCACAAGCCAGGGAT
12531 TGGTCGGGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.24, C:0.22, G:0.43, T:0.10
Consensus pattern (25 bp):
GGGCAGGATGCACAAGCCAGGGATC
Found at i:13334 original size:26 final size:26
Alignment explanation
Indices: 13305--13357 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13295 TCTGGTGGAT
*
13305 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
13331 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
13357 C
1 C
13358 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:20986 original size:26 final size:26
Alignment explanation
Indices: 20957--21009 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20947 CTGGTTCGAT
*
20957 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
20983 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
21009 C
1 C
21010 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:21380 original size:896 final size:893
Alignment explanation
Indices: 19315--24738 Score: 7340
Period size: 891 Copynumber: 6.1 Consensus size: 893
19305 ACACCTACGT
* * * * * *
19315 GCTGTTGATCCTGCTACCATAACCCTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTAT
1 GCTGCTGATCCTGCTACCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
* *
19380 GCCTAAGCCAACCGACGAAACGAGCGGGCGGTCGGGCACTACGCCGGCCAGAGAGGCGGGATGCG
66 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACTACG-CGGCCAGAGAGGCGGGATGCG
*
19445 CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAAT
130 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CCATGCCAAT
*
19510 GCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
194 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
* *
19575 AGACGACTCGTTTTCTATTTTTCATGATTTTAGAAACTTTTTACGGTTCGAGATTTTTTTAAAAT
259 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAAT
* * * *
19640 TTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGATGTGATCCTTGTGTTTTTGTTGGCATGCA
324 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
* * *
19705 TAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTTGAGACCATTCGAAAAAAGTGTCCCC
389 TAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
19770 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGT
454 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
19835 -TGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACCCATCG
519 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * **
19899 CACATCATGTGTGCACACCCCCTGCCCCCCAATCGTTGGATCCCCAATGCCGCTAGTCAGGTTCT
584 CACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
19964 CTGGCGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAACACATGCCCGAGCC
649 CCGGCGATTCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
20029 CAGCATGTGCACCCGTAACTCTTGATCTGGTCCAATCTTACA----GAATGAACTCCGTATGCTT
714 CAGCATGTGCACCCGCAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGCTT
* * * *
20090 AGACTGGGAATGAACTTCGTATGCCAAAGTTAACCCACGAAACGAGCATGCGGGCGCTCAGCCAG
779 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG
** * ** * *
20155 CCAGTCGGGCAGGATGCGCTCAGCCGGCCATCAATCGGGTCCCCCTTGC-A
844 CCAGAGGGGCAGGATGCGC-AAGCCGGGGATCGATCGGGTCCCCCCTGCGA
* * * *
20205 TGCTG-TCGATCCAGCTGCCGCAACCCTCAGTCTGGT-TCGATCTTAGACTGGGAATGAACTCCG
1 -GCTGCT-GATCCTGCTACCACAACCCTCAGTCTGGTCT-AATCTTAGACTGGGAATGAACTCCG
* *
20268 TATGCATAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACTATGCCGGCCAGAGAGGCGGGAT
63 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACTACG-CGGCCAGAGAGGCGGGAT
* * * *
20333 GCGGAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTTCAGTCCC
127 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCA-TGCC
* * * *
20398 AAAGCCATTTTTATGGCTTGTAAATCCATACCATGGTCCCTTAAGCCTTCATGTGAAGTTTCAAG
191 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* * * * *
20463 GTAAGACGACTCGTTTTTTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAA
256 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAA
*
20528 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGTATTTTTTTTGGCAT
321 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
* * *
20593 GCATAAAAAAATTCAACTAAAAAGTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
386 GCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
* *
20658 CCCGTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAA-GG
451 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
20722 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCA
516 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* *
20787 TCGCACATCATGTGTGCACACCCCCCGGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTTAGG
581 TCGCACATCATGTGCGCACACCCCCC-GCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGG
* * * * * *
20852 TTCTCCGGTGATTCTCCGGCGATGGTGTCGCGGGTGAAAAAAAATGCCGCACCAGCACATGCTCG
645 TTCTCCGGCGATTCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCG
* * *
20917 AGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTTCGATCTTACACTGGGAATGAACTCTGTAT
710 AGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTAT
* *
20982 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAG
775 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * ** * *
21047 CCGGCCAGAGGGGCAGAATGCGCAAGCTAGGGATCGACCGGGTCCCCCCCTGTGA
840 CCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGT-CCCCCCTGCGA
* ** *
21102 GCTGCTAATCCTGCTACTGCAACCCTCGGTCCT-GTCTAATCTTAGACTGGGAATGAACTCCGTA
1 GCTGCTGATCCTGCTACCACAACCCTCAGT-CTGGTCTAATCTTAGACTGGGAATGAACTCCGTA
*
21166 TGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCAGGCACTACGCAGGCCAGAGAGGCGGGATGC
65 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACTACGC-GGCCAGAGAGGCGGGATGC
21231 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAA
129 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CCATGCCAA
* * *
21296 TGGCATTTTTATGGCTTGTAAATTCATACATTGGTCCCTTAACCCTTCATGTGAAGTTTCATGGC
193 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* * * * *
21361 AAGACGACTCATTTTTTATTTTTCAAGATTTTCT-AAACTTTTTACGGTTCGGGATTTTTTAAAA
258 AAGACGACTCGTTTTCTATTTTTCACGATTTT-TGAAACTTTTTACGGTTCGAGATTTTTTTAAA
* * * *
21425 ATTTTTTTAGAAGGAGTTCTAGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTTTTGGCATG
322 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
* *
21490 CACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
387 CATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
21555 CCATTTCAGACACTTTAATGGCTACTAGCAGCAATCTTGTAAAATCTCAAATGCTCTTTAAGGGG
452 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* ** *
21620 GTGTGAGTTCTCGAGGTTTGATTAGGGATACAGGGCCAATATAAGGGCCAAGCACCAGCACCCAT
517 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
** * *
21685 CGCACATCATGTGCGTGCACCCCTTGCC-CCACCACCAATTGTCGGAACCCCAATGCCACCGGTC
582 CGCACATCATGTGCGCACACCCC---CCGCC-CC-CCAATCGTCGGAACCCCAATGCCGCCGGTC
* * *
21749 AGG-T-T----C--TTCT---GCGATGGTGCCCCGAGCG-AAAAAAATACGGCACCATCACATGC
642 AGGTTCTCCGGCGATTCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGC
* * *
21802 CCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTCCAATCTTACATTGGGAATGAACTCTG
707 CCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCG
* *
21867 TATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
772 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * * * *
21932 TAGCCGGCAAGAGGGGTAGGATGCGCAAGCCGGAGATCGATCGAGTCCTCCCTGCGT
837 CAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCTGCGA
* * * * **
21989 GATGCTGATCCTGCTGCCACAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTTTGTAT
1 GCTGCTGATCCTGCTACCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
* * *
22054 GCCTAAGCCAAACGATGAAACGAAG-GGACGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGC
66 GCCTAAGCCAACCGACGAAACG-AGCGGGCGGGCAGGCACTACG-CGGCCAGAGAGGCGGGATGC
* * * * *
22118 GCAAGCTGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATATTCATATTTCTTCTATGCCAA
129 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-TCCATGCCAA
* *
22183 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATCTGAAGTTTCACGGC
193 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
*
22248 AAGACGACTCGTTTTCTACTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTTTAA
258 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGA--TTTTTTTAA
* * * * *
22313 AACTTTTTCAGAAGGAGTTTTGGCCCTAAACTTGGTAGATGTGATTCTTGTATTTTTGTTGGCAT
321 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
* *
22378 GCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
386 GCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
*
22443 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGG
451 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
** * * * *
22508 GGTACGTGTTTTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGTACCCA
516 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * **
22573 TTGCACATCATGTGCGCACACCACCCCGCCCCCCAATCGTCGGAACCCCAATGTCATCGGTCAGG
581 TCGCACATCATGTGCGCACACC-CCCCGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGG
** ** * * * *
22638 TTCTCTAGCGATAGTCCGACGATGGTGCCCCAGGCG-AAAAAAATGCGGCACCAGCAAATGCCCA
645 TTCTCCGGCGATTCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCG
* * * * * *
22702 AGCTCGGCATGTGCACTCGTAACCCTCGGTCCGATCCAATCTTACACTGGGAATGAACTCCGTAT
710 AGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTAT
* *
22767 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTTAG
775 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** ** * * *
22832 CTGGAAAGAGGGGCAGGATGCACAAGCCGGGGATC-AGCCGGGTTCCCCCCTAC-A
840 CCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA-TCGGG-TCCCCCCTGCGA
* * * *
22886 TGCTGCTGATCCTACTACCACAACCCTCAGTTTGGTCTGATCTTAGATTGGGAATGAACTCCGTA
1 -GCTGCTGATCCTGCTACCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTA
* * * * *
22951 TGCCTACGCCAACCGCCGAAATGAGCGAGCGGGCAGGCACTACGTCGGCCAAAGAGGCGGGATGC
65 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACTACG-CGGCCAGAGAGGCGGGATGC
* *
23016 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAAGCACATCTTCATATTTCTACCATGCCAA
129 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CCATGCCAA
* *
23081 TGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCTTGAGCCTTCATGTGAAGTTTCATGGC
193 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
* * *
23146 AAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTTACAGTTCGGGATTTTTTT-AA
258 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTTACGGTTCGAGATTTTTTTAAA
*
23210 ATTTTTTCAGAAGGAG-TTTGGCCCTAAACTTGGTA-ACGTGATCCTTGTA--TTTTTTGGCATG
322 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
*
23271 CA-CAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT-TGACCATTTGAAAAAAGTGTCC
387 CATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
*
23334 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAACTCAAGATGCTCTTTAAGGG
452 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA-ATGCTCTTTAAGGG
* **
23399 GGTGTGAGTTCTCGAGG-TTGATAAGGGA-A-GGGGCCAATATAAATGCCAAGTACCAGCACCCA
516 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
23461 TCACACATCATGTGCCGCACACTCCCCCG--CGCCAATCGTCGAAACTCTAATGCCG-C---CA-
581 TCGCACATCATGTG-CGCACAC-CCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAG
** * * *
23519 G---TCC-AAG-TTCT-CTG-G-T-TTGCCCC-GGCGAAAAAAAAATGCGGCACCAGCACATGGC
644 GTTCTCCGGCGATTCTCCGGCGATGGTGCCCCGGGCG-AAAAAAAATGCGGCACCAGCACATGCC
* * * * * *
23574 CGAGCTCTA-CATGTGCACACC-CAA-CCT-TGACTGGTCGATTC-GACACTGGGAATGAACTCC
708 CGAGC-CCAGCATGTGCAC-CCGCAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCC
* * ** * * **
23634 GTAAGCTTAGACTAGGAATGAACTCCGTATGCCTATTTCATCCCACGAAACGAGTGTGCGGGTAC
771 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * *
23699 TCAGCTAGCCAGAGGGGCAGGATGTGCAAGCCGGGGATTGATCGGGTCCCCCCTGCGT
836 TCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCTGCGA
* * * *
23757 GCTACTGATCCTGCTACCACAAGCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
1 GCTGCTGATCCTGCTACCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
* *
23822 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACACTGGCCAGAGAGGCGGGATGCG
66 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACTACGC-GGCCAGAGAGGCGGGATGCG
* * * *
23887 CAAGTCGTGGATCGATAGGGTCGTAGGTGGGTTTAGGCACATCATCATATTTCTTCAGTGCCAAT
130 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCA-TGCCAAT
* *
23952 GCCATTTTTATGCCTTGTAAATTCATACCATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
194 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
*
24017 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTTAAAA
259 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTTTAAAA
*
24082 TTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
323 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
* *
24147 ATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGA-CATTTGAAAAAAGTGTCCC
388 ATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
24211 CATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGG
453 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
24276 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGGCCAAGTACCAGAACCCAGC
518 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* ** * *
24341 ACACATCATGTGCATACA-CCCCCTCCCCCCAATCGTCGGAACCCCAATGCTGCCGGTCAGGTTC
583 GCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * *
24405 TCCGGCGATGCTCCGAG-GCTGGTACCCCGAGCGAAAAAAAATGTGGCACCAGCACATGCCCGAG
648 TCCGGCGATTCTCCG-GCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAG
* * * *
24469 CCCAGCATGTGCACCCACAACCCTCGGTTTGGTCCGATCCTACACTGGGAATGAACTCCGTATGC
712 CCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGC
* * * * * * *
24534 TTAAACTGGCAATGAACTCCGTATGCCTATGTCATCCCATGAAACGAGCGTGCGGGCTCTCAGCT
777 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * *
24599 AGCCAGAAGGGCAGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCCTGGGT
842 AGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCTGCGA
* * *
24651 GCTACCGATCCTGCTACCACAATCCTCAGTCTGGTCTAATCTTAGA-TAGGGAATGAACTCCGTA
1 GCTGCTGATCCTGCTACCACAACCCTCAGTCTGGTCTAATCTTAGACT-GGGAATGAACTCCGTA
*
24715 TGTCTAAGCCAACCGACGAAACGA
65 TGCCTAAGCCAACCGACGAAACGA
24739 TCGGCCGGAT
Statistics
Matches: 3994, Mismatches: 445, Indels: 185
0.86 0.10 0.04
Matches are distributed among these distances:
869 17 0.00
870 281 0.07
871 127 0.03
872 31 0.01
873 23 0.01
874 40 0.01
875 52 0.01
876 112 0.03
877 31 0.01
878 44 0.01
879 2 0.00
881 2 0.00
882 2 0.00
883 2 0.00
885 3 0.00
886 35 0.01
887 309 0.08
888 230 0.06
889 292 0.07
890 96 0.02
891 657 0.16
892 152 0.04
893 9 0.00
894 221 0.06
895 33 0.01
896 579 0.14
897 291 0.07
898 272 0.07
899 17 0.00
900 32 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCTGCTGATCCTGCTACCACAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACTACGCGGCCAGAGAGGCGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTT
TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATA
AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
CATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
GGCGATTCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCA
GCATGTGCACCCGCAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCC
AGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCTGCGA
Found at i:21874 original size:26 final size:26
Alignment explanation
Indices: 21845--21897 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21835 CTGGTCCAAT
*
21845 CTTACATTGGGAATGAAC-TCTGTATG
1 CTTACACTGGGAATGAACTTC-GTATG
*
21871 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTTCGTATG
21897 C
1 C
21898 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTTCGTATG
Found at i:22771 original size:26 final size:26
Alignment explanation
Indices: 22742--22794 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22732 CCGATCCAAT
22742 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
22768 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
22794 C
1 C
22795 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:24903 original size:208 final size:208
Alignment explanation
Indices: 24544--24943 Score: 493
Period size: 208 Copynumber: 1.9 Consensus size: 208
24534 TTAAACTGGC
* * * * * * *
24544 AATGAACTCCGTATGCCTATGTCATCCCATGAAACGAGCGTGCGGGCTCTCAGCTAGCCAGAAGG
1 AATGAACTCCGTATGCCTAAGTCAACCAATGAAACAAACGTGCGGGCACTCAGCCAGCCAGAAGG
* ** * *
24609 GCAGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCCTGGGTGCTACCGATCCTGCTACCACAAT
66 GCAGGATGCGCAAGCCGAGGATCAATCAGGTCCCCCCTGCGTGCTACCAATCCTGCTACCACAAT
** *
24674 CCTCAGTCTGGTCTAATCTTAGA-TAGGGAATGAACTCCGTATGTCTAAGCCAACCGACGAAACG
131 CCTCAGTCCAGTCTAATCTTAGACTA-GGAATGAACTCCGTATGGCTAAGCCAACCGACGAAACG
24738 ATCGGCCGGATGGG
195 ATCGGCCGGATGGG
* *
24752 AATGAACTTCGTATGCCTAAGTCAACCAATGAAACAAACGTGCGGGCACTCAGCCGGCCAGAAGG
1 AATGAACTCCGTATGCCTAAGTCAACCAATGAAACAAACGTGCGGGCACTCAGCCAGCCAGAAGG
* * * ** *
24817 GCAGGATGCGTAAGCCGAGGATCAATC-GAGTCCCTCTTGCGTGCTGTCAATCCTGCTGCCACAA
66 GCAGGATGCGCAAGCCGAGGATCAATCAG-GTCCCCCCTGCGTGCTACCAATCCTGCTACCACAA
* * * *
24881 -CCATCGGTCCAGT-TGGATCTTAGACTAGGAATGAACTTCGTATGGCTAAGTCAACCGACGAAA
130 TCC-TCAGTCCAGTCT-AATCTTAGACTAGGAATGAACTCCGTATGGCTAAGCCAACCGACGAAA
24944 TGGACGGGCG
Statistics
Matches: 161, Mismatches: 27, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
207 4 0.02
208 155 0.96
209 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.27, T:0.20
Consensus pattern (208 bp):
AATGAACTCCGTATGCCTAAGTCAACCAATGAAACAAACGTGCGGGCACTCAGCCAGCCAGAAGG
GCAGGATGCGCAAGCCGAGGATCAATCAGGTCCCCCCTGCGTGCTACCAATCCTGCTACCACAAT
CCTCAGTCCAGTCTAATCTTAGACTAGGAATGAACTCCGTATGGCTAAGCCAACCGACGAAACGA
TCGGCCGGATGGG
Found at i:25624 original size:26 final size:26
Alignment explanation
Indices: 25595--25647 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25585 CTAGTCCGAT
*
25595 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
25621 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
25647 C
1 C
25648 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:26516 original size:26 final size:26
Alignment explanation
Indices: 26487--26538 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
26477 TCCGATCTGA
*
26487 TCTTACACTGGGAATGAACTCTGTAT
1 TCTTACACTGGGAATGAACTCCGTAT
*
26513 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTACACTGGGAATGAACTCCGTAT
26539 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTACACTGGGAATGAACTCCGTAT
Found at i:27720 original size:896 final size:893
Alignment explanation
Indices: 24748--28309 Score: 4820
Period size: 896 Copynumber: 4.0 Consensus size: 893
24738 ATCGGCCGGA
* * * * *
24748 TGGGAATGAACTTCGTATGCCTAAGTCAA-CCAATGAAACAAACGTGCGGGCACTCAGCCGGCCA
1 TGGGAATGAACTCCATATGCCTAAGTCAACCCAA-GAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * * *
24812 GAAGGGCAGGATGCGTAAGCCGAGGATCAATCGAGT-CCCTCT-TGCG-TGCTGTCAATCCTGCT
65 GAGGGGCAGGATGCGCAAGCCGAGGATCGA-CGGGTCCCCCCTATGTGTTGCTG---ATCCTACT
* * ** * * * *
24874 GCCACAACCATCGGTCCAGT-TGGATCTTAGACTAGGAATGAACTTCGTATGGCTAAGTCAACCG
126 GCCACAACCCTCAGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
24938 ACGAAATG-GACGGGCGGGCGAGCACTACGTCGACCAGAGAGGCAGGATGCGCAAGCCATGGATC
190 ACGAAACGAG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
* *
25002 GATAGGG-GGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTTATGG
254 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
* * *
25066 CTTATAAATTCATACAATGGTCCCTTAAGCCTTCATCTGAAGTTTCATGGCAAGATGACTCGTTT
319 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
* *
25131 TCTATTTTTCACGATTTTAGAAACCTTTTAC---T----A----TTT----TTTTTTC-GAAAGA
384 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAAGA
*
25180 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAAATTCA
449 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAAATTCA
*
25245 GCTACAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACT
513 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
25309 TTAATTGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCAT-G
578 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTC-TCG
* * *
25373 AGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACGCATTGCACATCATGTG
641 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
25438 CGCACACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGATAC
706 CGCACACCCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGC
** * *
25503 TCCGATGATGGTGCCCCGAGCGAAAAAAAAATGTGGCACCTA-CACATGC-CTGAGACCAGCATG
771 TCCGGCGATGGTG-CCCGAGCG-AAAAAAAATGCGGCACC-AGCACATGCTC-GAGCCCAGCATG
* **
25566 TGCACCTGCAACCCTCAGTCTAGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGAC
832 TGCACCTGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGAC
* * * * **
25628 TGGGAATGAACTCCATATGCCTAACTCAACCCAAGAAATGAGTGTGCGAGCGCTCAGTAGGCCAG
1 TGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * * * ** * ** *
25693 AGGGGTAGGATGCACAAGGCGGGGTTCGGTTGGGTCCCCTCTACATGTTG-TGGATCCTACTACC
66 AGGGGCAGGATGCGCAAGCCGAGGATC-GACGGGTCCCCCCTATGTGTTGCT-GATCCTACTGCC
* * * * **
25757 ATAACCCTCGGT-TCGGTCCGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATT
129 ACAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * *
25821 AAATGAGCGAGCAGGCGGGCACTACGACGGCTAGAGAGGCGGGATGGGCAAGCCGTGGATCGATA
193 AAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
* * *
25886 -GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTCATGCAAATGCCATTTTTATGGCTTG
258 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
25950 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
323 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
*
26015 GTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAAGTTTTTTCAGAAAGAGTT
388 TTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAA-TTTTTTCAGAAAGAGTT
* *
26080 TTTGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
452 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
*
26145 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACGCTTTAA
517 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
26210 TGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTTGAGGTTT
582 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTT
*
26275 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CAGCACCCATCGCACATGATGTGCGCACA
647 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * *
26339 -CCCCCCGCCCCCCAATCACCGGAACCCTAATGCCGTCGATCAGGTTCTCCAGCGATGCTCCGGT
712 CCCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGGC
* * * * *
26403 GATGGTTCCCTGAGTGAAAAAAAATACGGCACCAGCATATGCCCGAGCCCAGCATGTGCA-CTCG
777 GATGGTGCCC-GAGCGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCT-G
* * * * *
26467 CAACCCTTGGTCCGATCTGATCTTACACTGGGAATGAACTCTGTATTCTTAGAC
840 CAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGAC
* * *
26521 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAA
1 TGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
** * * * * * *
26586 AGGCACAGGATGCGCAAGTC-AGGGATCGGTCGGGACCCCCCCTGTGTGCTGCTAATCCTACTG-
66 AGGGGCAGGATGCGCAAGCCGA-GGATC-GACGGG-TCCCCCCTATGTGTTGCTGATCCTACTGC
*
26649 TAGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
128 CA-CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * * *
26714 GAAACGAGCGGGCCGGCGGGCACTATGCCAGCCAAAAAGGCGGGATGCGCAAGCCGTGGATCGAT
192 GAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
* *
26779 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACCATGCCAATGCCATTTTTATGGCTT
257 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
*
26844 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCA
322 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
26909 AATTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTT
387 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAAGAGTT
* * *
26974 TTGGCCCCAAACTTGGTAGACGTGTTCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTA
452 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
* *
27039 AAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAA
517 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
27104 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGCGTGCA-TTCTCAAGGT
582 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG-AGTTCTCGAGGT
* * *
27168 TTGACGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGCACATCATGTGTGCA
645 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
** * * * * * * *
27233 CACCCCCCCAACCCCTAATCGTCGGAACCCCAAAGCTACCGGTCAGTTTCTCTGGCGATGCTCCG
710 CACCCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCG
* * *
27298 GCGATGGTGCCTCGGGCGAAAGAAAATGCGGCACCAGTACATGCTCGAGCCCAGCATGTGCACCT
775 GCGATGGTGCC-CGAGCGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCT
* *
27363 GTAACCCTCGGTCCGGTCCGATCTTACACTAGGAATGAACTCCGTATGCTTAGAC
839 GCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGAC
* * ** *
27418 TGGGAATAAACTTCATATGCCTAAGTCAACCCACTAAACGAGTGTGCGGGCGCTCAGCCGGCCAG
1 TGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * *
27483 AGGGGCAGGATGCCCAAGCCGAGGATCGACAGGGTCCCCCCTATGTGTTGCTGATCCTATTGCCG
66 AGGGGCAGGATGCGCAAGCCGAGGATCGAC-GGGTCCCCCCTATGTGTTGCTGATCCTACTGCCA
* * **
27548 CAACCCTCAATCTGGTCTGATCTTAGACTTGGAATGAACTCTATATGCCTAAGCCAACCGACGAA
130 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
27613 ACGAGCGGGCGGGCGGGCACTACGTCGGCCAGATAGGCGGGATGCGCAAGCCGTGGATCGATAGG
195 ACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
* *
27678 GTGGTAGGTGGGTCTAGGCACATGTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
260 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
27743 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
325 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
27808 TTTCATGATTTTTGAAACTTTTTACGGTTGGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
390 TTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAAGAGTTTTG
*
27873 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTTGGCATGCATAAAAAAATTCAGCTAA
455 GCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
* * *
27938 AAAGTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
518 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
28003 AGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAACGGGTGTGAGTTCTCGAGGTTTG
583 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTG
* * * *
28068 ATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGTACATCATGTGTGCACAC
648 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * *
28133 CCCCCCGGCCCCCCAATCGCCGAAACCCCAATGCCGTCGGTTAGGTTCTCTGGTGATGCTCCGGC
713 CCCCCC-GCCCCCCAATCGCCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGGC
* * * * *
28198 GATGGTGTCGCGGGTGAAAAAAAATGCCGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGC
777 GATGGTG-CCCGAGCGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCTGC
* * *
28263 AACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCTGTATGC
841 AACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGC
28310 CTAAGTCAAC
Statistics
Matches: 2358, Mismatches: 271, Indels: 88
0.87 0.10 0.03
Matches are distributed among these distances:
879 2 0.00
880 327 0.14
881 11 0.00
882 2 0.00
883 4 0.00
887 1 0.00
891 3 0.00
892 3 0.00
893 168 0.07
894 372 0.16
895 250 0.11
896 509 0.22
897 428 0.18
898 277 0.12
899 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
TGGGAATGAACTCCATATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
AGGGGCAGGATGCGCAAGCCGAGGATCGACGGGTCCCCCCTATGTGTTGCTGATCCTACTGCCAC
AACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAAGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCCGCCCCCCAATCGCCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGGCGATG
GTGCCCGAGCGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCTGCAACCC
TCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGAC
Done.