Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168071.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_32, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 761692
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.42
Warning! 1000 characters in sequence are not A, C, G, or T
File 10 of 17
Found at i:377169 original size:533 final size:525
Alignment explanation
Indices: 376123--378614 Score: 1669
Period size: 533 Copynumber: 4.7 Consensus size: 525
376113 AATTATTAAT
* * * *
376123 AATTGTTTTATGAGAAAACAAAGATCATAAACT-ATTTAAGATTGATATTTGTTTAAATGGTCAT
1 AATTGTTTTATGA-AAAA-AAAGATCA-AAA-TGATTTAA-ATAGATAATTGTTCAAA-AGT-AT
* ** * * **
376187 AACTATTTGAATTGGTTTGAAAACAACTTTAGTTTTTAAATATCTTGCTTATTAATTTTTGAAAT
59 AACTATTTGAACTATTTTGTAAATAA-TTTA-TTTTT-AA-ATCTT--TTATTAATTTTCAAAAT
* * * * * *
376252 ATTAGTAAAATAGTATTATTTTATTTCGTATAAGTTTTTAT-GAACTGAAATAAT-TGTTTATTA
118 ATTAATAAATTAGTATTATTTTATTT--T-GAA-TTTTGATAGAAC--AGAT--TGT-TTTATGA
* * * * * * *
376315 CAAAATAAAAAGTCATAATGACTTT-AAATAAAAAATTGTTCAAATAGTCA-AATTTATTTAAAA
174 CAAAACAAAAGGTCATAATGA-TTTGAAATAGATAATTGTTCAAATAGTCATAA-CTATTTGAAC
* * *
376378 TTGTTCAATAAACA-AATTT-ATATTTTTAAATCTCGTACTCATTAATTTTTC-AAATGTTAATA
237 TTGTTC-ATAAACATAGTTTCAT-TTTTTAAATCTCTTACTCATTAA-TTTTCAAAATATTAATA
* * *
376440 AATTAGTATTATTTTATTTTAAATAAGCTTATATGAACTGAAATAATTATTTTATGACT-AAAC-
299 AATTAGTATTATTTTATTTCAAATAAGCTTATATGAATTGAAATAATTGTTTTATGA-TAAAACA
* * * * * * * * * * * *
376503 AAAGGTTAGAA-TGATTTAAAATAGATAATTGTTCTAATAGTCTTAATTGTTTGAACTGGTTTGA
363 AAATGTCATAACTGATTTGAAATAGATAATTATTCAAACAGTCATAACTATTTGAACTTGTTTGG
* * *
376567 CAAACATATTTATTTTTTTAAATCTCTTACTTATTAATTTTT-GAAATATTATTAAATTAGTATT
428 TAAACATATTTATTTTTTTAAATCTTTTACTTATTAATTTTTAG-AATATTAATAAATTAGTATT
*
376631 ATTTTAATCCAGATAAGCATGTATGGAAAGAAAC
492 ATTTTAATCCAAATAAGCATGTATGGAAAGAAAC
376665 AATTGTTTTATGACAAAATAAAGATCAAAATGATTTAAGATAGATAATTGTTCAAATAGTCATAA
1 AATTGTTTTATGA-AAAA-AAAGATCAAAATGATTTAA-ATAGATAATTGTTCAAA-AGT-ATAA
376730 CTATTTGAACTATTTTCGTAAATAGATTTAGTTTTTAAATCTTTTATTAATTTTCAAAATATTAA
61 CTATTTGAACTATTTT-GTAAATA-ATTTA-TTTTTAAATCTTTTATTAATTTTCAAAATATTAA
* * * * *
376795 TAGATCAGTATTATTTTATTTTGCCAATTTTGCAT-GAACAGATTGTTTTCTAACTAAACAAAAG
123 TAAATTAGTATTATTTTATTTTG--AATTTTG-ATAGAACAGATTGTTTTATGACAAAACAAAAG
* * * * * *
376859 ATCATAATGATTTCAAATAGATAATTGTTCAAATGGACATGATTATTTGAACTTGTTCGATAAAC
185 GTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTC-ATAAAC
* *
376924 ATA-TTT-ATTTTTTAAATCTCCTAC-CTTTTAATTTTCAAAATATTAATAAATTAGTATTATTT
249 ATAGTTTCATTTTTTAAATCTCTTACTC-ATTAATTTTCAAAATATTAATAAATTAGTATTATTT
* * * *
376986 TATTCCAAATAAACTTGTATGAATTGAAATAATTGTTTTATGATAAAACAAAATATCATAACT-A
313 TATTTCAAATAAGCTTATATGAATTGAAATAATTGTTTTATGATAAAACAAAATGTCATAACTGA
* * ** *
377050 TTTGAAATAAATAATTATTCAAACAATCATAACTATTTGAACTTGCATGGTAAACAAATTTATTT
378 TTTGAAATAGATAATTATTCAAACAGTCATAACTATTTGAACTTGTTTGGTAAACATATTTATTT
* * * * * * *
377115 TTTTAACTCTTTTACTTATCAATTTTTAGAATATTAATAAACTAGTACTATTTTATTTCAAATAT
443 TTTTAAATCTTTTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTAATCCAAATAA
377180 G-ATTGTAT-GAATAGAAAC
508 GCA-TGTATGGAA-AGAAAC
* * * * * *
377198 ATTTGGTTTATAATGAAACAAAAGGTCATAACT-ATTCGAAAAAGATAATTGTTC-AAA--A-AA
1 AATT-GTTT-T-ATGAAAAAAAAGATCA-AAATGATT-TAAATAGATAATTGTTCAAAAGTATAA
* * **
377258 CAAATT----TATTTT-T---TAA---ATTTTT--A-C--TTATTAATTTTTGAAATATTAATAA
61 CTATTTGAACTATTTTGTAAATAATTTATTTTTAAATCTTTTATTAATTTTCAAAATATTAATAA
* *
377307 ATTTA-TATTATTTTATTCGAAATAAACTTGTATGAATAGGAAC-GATTGTTTTATGACAAAACA
126 A-TTAGTATTATTTTATT----TTGAA-TT-T-TG-ATA-GAACAGATTGTTTTATGACAAAACA
*
377370 AAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGA
181 AAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCATA
* *** *
377435 AA-ATAGTTTCA-TTTTTAAATCTCTTACTCATTATTTTTTGGAATATTAATAAATTAGTTTTAT
246 AACATAGTTTCATTTTTTAAATCTCTTACTCATTAATTTTCAAAATATTAATAAATTAGTATTAT
** * * * * * * * *
377498 TTTATTTTGAATATGCCTATATGAATTGATACAATTGTTTTAGGATGAAACAAAAGGTCA-AAAT
311 TTTATTTCAAATAAGCTTATATGAATTGAAATAATTGTTTTATGATAAAACAAAATGTCATAACT
* * ** * * * *
377562 GATTTTAAATAGATAATTACTCAAATGGTTATGACTATTTGAACTTTTTTGGTAAATATATTTA-
376 GATTTGAAATAGATAATTATTCAAACAGTCATAACTATTTGAACTTGTTTGGTAAACATATTTAT
* * * * * * *
377626 TTTTTAAAATCTTTTACTTATTAATTGTCAAAATATCAAAAAATTAATATTATTTTAATCCAAAT
441 TTTTTTAAATCTTTTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTAATCCAAAT
*
377691 AAGCTTGTATGGAGAA-AAAC
506 AAGCATGTATGGA-AAGAAAC
* * * * * *
377711 AATTGTTTTATGATAAAACAAAATATCATAACGGTTTGAAATAAATAATTGTTCAAACAGTTATG
1 AATTGTTTTATG--AAAA-AAAAGATCAAAATGATTT-AAATAGATAATTGTTCAAA-AG-TATA
* * *
377776 ACTATTTGAACTTATTTGGTAAACAAATTTATTTTTTAAATCTTTTACTT-ATTAAATGTCTAAA
60 ACTATTTGAAC-TATTTTGTAAA-TAATTTA-TTTTTAAATCTTTTA-TTAATT---T-TCAAAA
* * * * * * *
377840 TATTAATAAATTTGTA-TAATTT-TTTTGAAATATGAGTAGAAAAAATTGTTTTATGACAAAATA
117 TATTAATAAATTAGTATTATTTTATTTTGAATTTTGA-TAGAACAGATTGTTTTATGACAAAACA
*
377903 AAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCA-A
181 AAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCATA
* *
377967 AAAATAGTTTCATTTTTTAAATCTCTTACTCATT-GTTTT-AAGAATATTAATAAATTAG-ATTT
246 AACATAGTTTCATTTTTTAAATCTCTTACTCATTAATTTTCAA-AATATTAATAAATTAGTA-TT
* * * * * *
378029 ATGTTAATTCAAATAAGCTTTTATGAATAGAAACAAATT-TTTTGTGATAAAACAAAATGTCATA
309 ATTTTATTTCAAATAAGCTTATATGAATTGAAA-TAATTGTTTTATGATAAAACAAAATGTCATA
* * * ** *
378093 ACT-ATTTGAAATAGATAATTGTTCAAACAGTCATAACTATTTGCA-TTAGTTAGGCCAACAGAT
373 ACTGATTTGAAATAGATAATTATTCAAACAGTCATAACTATTTGAACTT-GTTTGGTAAACATAT
* ** * * * * * *
378156 TCA-TTTTTTAAATCCGTTACTTATGAA-TTTTCGAAATATTAATACATTAGCATTACTTTATTC
437 TTATTTTTTTAAATCTTTTACTTATTAATTTTTAG-AATATTAATAAATTAGTATTATTTTAATC
** * * *
378219 TGAATAAG-ACTATAT-GAACAAAAAT
501 CAAATAAGCA-TGTATGGAA-AGAAAC
* * * * * * *
378244 AATTATTTTATGACAAAACAAATGGTCATAATGATTTGAAATAAAGAATTGTTTAAATAATTATA
1 AATTGTTTTATGA-AAAA-AAA-GATCAAAATGATTT-AAATAGATAATTG-TTCAA-AAGTATA
** * * * * * *
378309 ACTAACTGAACTGGTTTAGTAAACATATTTATTTTTTAAATCTCTTCTTAATTTTCAAAATATGA
60 ACTATTTGAACT-ATTTTGTAAATA-ATTTA-TTTTTAAATCTTTTATTAATTTTCAAAATATTA
* * * *** ** * *
378374 ATAGATTAATACTATTTTATTCCAAACAAACTT-ATACGAACAAAAACCTTTGTTTTATGAAAAA
122 ATAAATTAGTATTATTTTATT---TTGAATTTTGATA-GAAC--AGA---TTGTTTTATGACAAA
* * * * * * * * *
378438 AGAAAAAGTCATAACGATTTGAAATAGATAATTATTCAAATAATTATAATTATTTAAACTGGTTT
178 ACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTG-TT
* * ** * * * ** ** *
378503 GACAAACA-AAATT-ATTTTTTAAATCCCATACTTATTAATTTTTTAAATATTAATAAATTTTTT
242 CATAAACATAGTTTCATTTTTTAAATCTCTTACTCATTAATTTTCAAAATATTAATAAATTAGTA
* * * *
378566 TTATTTTA-TTCTAAATAAG-TTACTAAGAATTGAAAAAATTATTTGATGA
307 TTATTTTATTTC-AAATAAGCTTA-TATGAATTGAAATAATTGTTTTATGA
378615 CAATAAAATA
Statistics
Matches: 1551, Mismatches: 283, Indels: 235
0.75 0.14 0.11
Matches are distributed among these distances:
509 35 0.02
510 5 0.00
511 4 0.00
512 11 0.01
513 97 0.06
514 161 0.10
515 78 0.05
516 4 0.00
518 2 0.00
519 7 0.00
522 1 0.00
524 11 0.01
525 1 0.00
528 6 0.00
529 20 0.01
530 6 0.00
531 12 0.01
532 119 0.08
533 541 0.35
534 69 0.04
535 18 0.01
536 13 0.01
537 8 0.01
538 141 0.09
539 56 0.04
540 13 0.01
541 55 0.04
542 56 0.04
543 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (525 bp):
AATTGTTTTATGAAAAAAAAGATCAAAATGATTTAAATAGATAATTGTTCAAAAGTATAACTATT
TGAACTATTTTGTAAATAATTTATTTTTAAATCTTTTATTAATTTTCAAAATATTAATAAATTAG
TATTATTTTATTTTGAATTTTGATAGAACAGATTGTTTTATGACAAAACAAAAGGTCATAATGAT
TTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCATAAACATAGTTTCATTT
TTTAAATCTCTTACTCATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTCAAATAAG
CTTATATGAATTGAAATAATTGTTTTATGATAAAACAAAATGTCATAACTGATTTGAAATAGATA
ATTATTCAAACAGTCATAACTATTTGAACTTGTTTGGTAAACATATTTATTTTTTTAAATCTTTT
ACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTAATCCAAATAAGCATGTATGGAAA
GAAAC
Found at i:377293 original size:152 final size:154
Alignment explanation
Indices: 377101--377406 Score: 394
Period size: 152 Copynumber: 2.0 Consensus size: 154
377091 CTTGCATGGT
*
377101 AAACAAATTTATTTTTTTAACTCTTTTACTTATCAATTTTT-AGAATATTAATAAA-CTAGTACT
1 AAACAAATTTATTTTTTTAAATCTTTTACTTATCAATTTTTGA-AATATTAATAAATCTA-TACT
* **
377164 ATTTTATTTC-AAATATGA-TTGTATGAATAGAAAC-ATTTGGTTTATAATGAAACAAAAGGTCA
64 ATTTTA-TTCGAAATA-AACTTGTATGAATAGAAACGA-TTGGTTTATAACAAAACAAAAGGTCA
377226 TAACT-ATTCGAAAAAGATAATTGTTCAAA
126 TAA-TGATTCGAAAAAGATAATTGTTCAAA
* * *
377255 AAACAAATTTA-TTTTTTAAAT-TTTTACTTATTAATTTTTGAAATATTAATAAATTTATATTAT
1 AAACAAATTTATTTTTTTAAATCTTTTACTTATCAATTTTTGAAATATTAATAAATCTATACTAT
* * *
377318 TTTATTCGAAATAAACTTGTATGAATAGGAACGATTGTTTTATGACAAAACAAAAGGTCATAATG
66 TTTATTCGAAATAAACTTGTATGAATAGAAACGATTGGTTTATAACAAAACAAAAGGTCATAATG
* *
377383 ATTTGAAATAGATAATTGTTCAAA
131 ATTCGAAAAAGATAATTGTTCAAA
377407 TAGTCATAAC
Statistics
Matches: 134, Mismatches: 12, Indels: 14
0.84 0.08 0.09
Matches are distributed among these distances:
151 5 0.04
152 105 0.78
153 13 0.10
154 11 0.08
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (154 bp):
AAACAAATTTATTTTTTTAAATCTTTTACTTATCAATTTTTGAAATATTAATAAATCTATACTAT
TTTATTCGAAATAAACTTGTATGAATAGAAACGATTGGTTTATAACAAAACAAAAGGTCATAATG
ATTCGAAAAAGATAATTGTTCAAA
Found at i:377726 original size:695 final size:685
Alignment explanation
Indices: 376568--377874 Score: 1679
Period size: 695 Copynumber: 1.9 Consensus size: 685
376558 CTGGTTTGAC
* *
376568 AAACATATTTATTTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTATTAAATTAGTATTAT
1 AAACAAATTTATTTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTAT
* * *
376633 TTTAATCCAGATAAGCATGTATGGAAAGAAACAATTGTTTTATGACAAAATAAAGATCAAAATGA
66 TTTAATCCAAATAAACATGTATGGAAAGAAACAATTGTTTTATGACAAAAAAAAGATCAAAATGA
* *
376698 TTTAAGATAGATAATTGTTCAAATAGTCATAACTATTTGAACTATTTTCGTAAATAGATTTAGTT
131 TTTAAGATAGATAATTGTTCAAATAGTCATAACTATTTGAACTATGTTCGAAAATAGATTTAGTT
* * *
376763 TTTAAATCTTTTATTAATTTTCAAAATATTAATAGATCAGTATTATTTTATTTTGCCAATTTTGC
196 TTTAAATCTTTTATTAATTTTCAAAATATTAATAAATCAGTATTATTTTATTTTGCAAATTTTGA
** * **
376828 ATGAACAGATTGTTTTCTAACTAAACAAAAGATCATAATGATTTCAAATAGATAATTGTTCAAAT
261 ATGAACAGATTGTTTTAGAACTAAACAAAAGATCAAAATGATTTCAAATAGATAATTACTCAAAT
* * *
376893 GGACATGATTATTTGAACTTGTTCGATAAACATATTTATTTTTTAAATCTCCTACCTTTTAATTT
326 GGACATGACTATTTGAACTTGTTCGATAAACATATTTATTTTTAAAATCTCCTACCTTTTAATTG
* * * * *** *
376958 TCAAAATATTAATAAATTAGTATTATTTTATTCCAAATAAACTTGTATGAATTGAAATAATTGTT
391 TCAAAATATCAAAAAATTAATATTATTTTAATCCAAATAAACTTGTATGAAGAAAAACAATTGTT
*
377023 TTATGATAAAACAAAATATCATAACTATTTGAAATAAATAATTATTCAAACAATCATAACTATTT
456 TTATGATAAAACAAAATATCATAACGATTTGAAATAAATAATTATTCAAACAATCATAACTATTT
* * * * *
377088 GAACTTGCATGGTAAACAAATTTATTTTTTTAACTCTTTTACTTA-TCAATTTTTAGAATATTAA
521 GAACTTACATGGTAAACAAATTTA-TTTTTTAAATCTTTTACTTATTAAATGTCTA-AATATTAA
377152 TAAACTAGTACT-ATTTTATTTCAAATATGATTGTATGAATAGAAACATTTGGTTTATAATGAAA
584 TAAACTAGTA-TAATTTT-TTTCAAATATGATTGTATGAATAGAAACATTTGGTTTATAATGAAA
377216 CAAAAGGTCATAACTATTCGAAAAAGATAATTGTTCAAA
647 CAAAAGGTCATAACTATTCGAAAAAGATAATTGTTCAAA
*
377255 AAACAAATTTA-TTTTTTAAAT-TTTTACTTATTAATTTTTGAAATATTAATAAATTTA-TATTA
1 AAACAAATTTATTTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAA-TTAGTATTA
* * * * * * *
377317 TTTTATTCGAAATAAACTTGTAT-GAATAGGAACGATTGTTTTATGACAAAACAAAAGGTCATAA
65 TTTTAATCCAAATAAACATGTATGGAA-AGAAACAATTGTTTTATGACAAAA-AAAAGATCAAAA
377381 TGATTTGAA-ATAGATAATTGTTCAAATAGTCATAACTATTTGAACT-TGTTCAGAAAATAG-TT
128 TGATTT-AAGATAGATAATTGTTCAAATAGTCATAACTATTTGAACTATGTTC-GAAAATAGATT
* *** * *
377443 TCA-TTTTTAAATCTCTTACTCATTATTTTTTGGAATATTAATAAATTAGTTTTATTTTATTTTG
191 T-AGTTTTTAAATCT-TT--T-ATTAATTTTCAAAATATTAATAAATCAGTATTATTTTATTTTG
* * *
377507 -AATATGCCTATATGAATTGATACA-ATTGTTTTAGGA-TGAAACAAAAGGTCAAAATGATTTTA
251 CAA-AT---T-T-TGAA-TGA-ACAGATTGTTTTAGAACT-AAACAAAAGATCAAAATGATTTCA
** * * * *
377569 AATAGATAATTACTCAAATGGTTATGACTATTTGAACTTTTTTGGTAAATATATTTATTTTTAAA
307 AATAGATAATTACTCAAATGGACATGACTATTTGAACTTGTTCGATAAACATATTTATTTTTAAA
** *
377634 ATCTTTTA-CTTATTAATTGTCAAAATATCAAAAAATTAATATTATTTTAATCCAAATAAGCTTG
372 ATCTCCTACCTT-TTAATTGTCAAAATATCAAAAAATTAATATTATTTTAATCCAAATAAACTTG
* * *
377698 TATGGAGAAAAACAATTGTTTTATGATAAAACAAAATATCATAACGGTTTGAAATAAATAATTGT
436 TATGAAGAAAAACAATTGTTTTATGATAAAACAAAATATCATAACGATTTGAAATAAATAATTAT
* * * **
377763 TCAAACAGTTATGACTATTTGAACTTATTTGGTAAACAAATTTATTTTTTAAATCTTTTACTTAT
501 TCAAACAATCATAACTATTTGAACTTACATGGTAAACAAATTTATTTTTTAAATCTTTTACTTAT
* * *
377828 TAAATGTCTAAATATTAATAAATTTGTATAATTTTTTTGAAATATGA
566 TAAATGTCTAAATATTAATAAACTAGTATAATTTTTTTCAAATATGA
377875 GTAGAAAAAA
Statistics
Matches: 529, Mismatches: 69, Indels: 38
0.83 0.11 0.06
Matches are distributed among these distances:
684 3 0.01
685 93 0.18
686 75 0.14
687 12 0.02
688 2 0.00
689 38 0.07
692 1 0.00
693 13 0.02
694 47 0.09
695 242 0.46
696 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.42
Consensus pattern (685 bp):
AAACAAATTTATTTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTAT
TTTAATCCAAATAAACATGTATGGAAAGAAACAATTGTTTTATGACAAAAAAAAGATCAAAATGA
TTTAAGATAGATAATTGTTCAAATAGTCATAACTATTTGAACTATGTTCGAAAATAGATTTAGTT
TTTAAATCTTTTATTAATTTTCAAAATATTAATAAATCAGTATTATTTTATTTTGCAAATTTTGA
ATGAACAGATTGTTTTAGAACTAAACAAAAGATCAAAATGATTTCAAATAGATAATTACTCAAAT
GGACATGACTATTTGAACTTGTTCGATAAACATATTTATTTTTAAAATCTCCTACCTTTTAATTG
TCAAAATATCAAAAAATTAATATTATTTTAATCCAAATAAACTTGTATGAAGAAAAACAATTGTT
TTATGATAAAACAAAATATCATAACGATTTGAAATAAATAATTATTCAAACAATCATAACTATTT
GAACTTACATGGTAAACAAATTTATTTTTTAAATCTTTTACTTATTAAATGTCTAAATATTAATA
AACTAGTATAATTTTTTTCAAATATGATTGTATGAATAGAAACATTTGGTTTATAATGAAACAAA
AGGTCATAACTATTCGAAAAAGATAATTGTTCAAA
Found at i:377776 original size:181 final size:181
Alignment explanation
Indices: 377255--378584 Score: 1053
Period size: 181 Copynumber: 7.4 Consensus size: 181
377245 ATTGTTCAAA
* ** *
377255 AAACAAATTTATTTTTTAAAT-TTTTACTTATTAATTTTTGAAATATTAATAAATTTATATTATT
1 AAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTAATATTATT
* * * ** *
377319 TTATTCGAAATAAACTTGTATGAATAGGAACGATTGTTTTATGACAAAACAAAAGGTCATAATGA
66 TTATTCCAAATAAGCTTATATGAATAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGA
**
377384 TTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAG-
131 TTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * *** * *
377434 AAA-ATAGTTTCA-TTTTTAAATCTCTTACTCATTATTTTTTGGAATATTAATAAATTAGTTTTA
1 AAACATA-TTT-ATTTTTTAAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTAATATTA
*** * * ** * * ** *
377497 TTTTATTTTGAATATGCCTATATGAATTGATACAATTGTTTTAGGATGAAACAAAAGGTCAAAAT
64 TTTTATTCCAAATAAGCTTATATGAATAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAAT
* ** * * * *
377562 GATTTTAAATAGATAATTACTCAAATGGTTATGACTATTTGAACTTTTTTGGT
129 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * * *
377615 AAATATATTTATTTTTAAAATCTTTTACTTATTAATTGTCAAAATATCAAAAAATTAATATTATT
1 AAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTAATATTATT
* * * * * ** * *
377680 TTAATCCAAATAAGCTTGTATGGAGAAAAACAATTGTTTTATGATAAAACAAAATATCATAACGG
66 TTATTCCAAATAAGCTTATATGAATAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGA
* * * * *
377745 TTTGAAATAAATAATTGTTCAAACAGTTATGACTATTTGAACTTATTTGGT
131 TTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * * ** *
377796 AAACAAATTTATTTTTTAAATCTTTTACTTATTAAATGTCTAAATATTAATAAATTTGTATAATT
1 AAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTAATATTATT
* *
377861 TT-TT-----TGAA----ATATGAGTAGAAAA-AATTGTTTTATGACAAAATAAAAGGTCATAAT
66 TTATTCCAAAT-AAGCTTATATGAATA-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAAT
* **
377915 GATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTG-TT-CA
129 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * *
377966 AAAAATAGTTTCATTTTTTAAATCTCTTACTCATT-GTTTT-AAGAATATTAATAAATTAGAT-T
1 AAACATA-TTT-ATTTTTTAAATCTTTTACTTATTAATTTTCAA-AATATTAATAAATTA-ATAT
* * * * * *
378028 TATGTTAATT-CAAATAAGCTTTTATGAATAGAAACAAATT-TTTTGTGATAAAACAAAATGTCA
62 TAT-TTTATTCCAAATAAGCTTATATGAATAAAAAC-AATTGTTTTATGACAAAACAAAAGGTCA
* * * *
378091 TAACT-ATTTGAAATAGATAATTGTTCAAACAGTCATAACTATTTGCA-TTAGTTAGGC
125 TAA-TGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT-GTTTGGT
* * * ** * * * ** *
378148 CAACAGATTCATTTTTTAAATCCGTTACTTATGAATTTTCGAAATATTAATACATTAGCATTACT
1 AAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTAATATTATT
** * * * *
378213 TTATTCTGAATAAGAC-TATATGAACAAAAATAATTATTTTATGACAAAACAAATGGTCATAATG
66 TTATTCCAAATAAG-CTTATATGAATAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG
* * * * * ** * *
378277 ATTTGAAATAAAGAATTGTTTAAATAATTATAACTAACTGAACTGGTTTAGT
130 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * *
378329 AAACATATTTATTTTTTAAATC---T-CTTCTTAATTTTCAAAATATGAATAGATTAATACTATT
1 AAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTAATATTATT
* * * * ** * * * *
378390 TTATTCCAAACAAACTTATACGAACAAAAACCTTTGTTTTATGAAAAAAGAAAAAGTCATAACGA
66 TTATTCCAAATAAGCTTATATGAATAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGA
* * * * * * **
378455 TTTGAAATAGATAATTATTCAAATAATTATAATTATTTAAACTGGTTTGAC
131 TTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * *** ** ** *
378506 AAACAAAATTATTTTTTAAATCCCATACTTATTAATTTTTTAAATATTAATAAATTTTTTTTATT
1 AAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTAATATTATT
*
378571 TTATTCTAAATAAG
66 TTATTCCAAATAAG
378585 TTACTAAGAA
Statistics
Matches: 897, Mismatches: 213, Indels: 80
0.75 0.18 0.07
Matches are distributed among these distances:
170 6 0.01
171 24 0.03
172 96 0.11
173 6 0.01
175 1 0.00
176 5 0.01
177 139 0.15
178 3 0.00
179 20 0.02
180 229 0.26
181 358 0.40
182 10 0.01
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (181 bp):
AAACATATTTATTTTTTAAATCTTTTACTTATTAATTTTCAAAATATTAATAAATTAATATTATT
TTATTCCAAATAAGCTTATATGAATAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGA
TTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
Found at i:386452 original size:23 final size:23
Alignment explanation
Indices: 386408--386452 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
386398 ACAAATTTAT
* *
386408 TTTTTAAATATATTATTTATTAA
1 TTTTCAAATATATTATTCATTAA
386431 TTTTCAAA-ATATTATTACATTA
1 TTTTCAAATATATTATT-CATTA
386453 GTATTATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (23 bp):
TTTTCAAATATATTATTCATTAA
Found at i:387043 original size:179 final size:176
Alignment explanation
Indices: 386785--387124 Score: 391
Period size: 181 Copynumber: 1.9 Consensus size: 176
386775 AACTTATCAT
* ** * *
386785 TTTTTAATATTAATAAAGTAATATTATTTTATTTGGGACAAGCTTTTATGATCTAAACAATTGTT
1 TTTTTAATATTAATAAAGTAATATTATATTATTTGGGACAAGAATGTATGAACTAAACAATTGTT
* * *
386850 TAGATAAAAAAAGGTCATAATGATTTTAGATAGATAATTATTCA-AA-TAGTCATAACTATTTGA
66 TAGATAAAAAAAGGTCAGAATGATTTGAAATAGATAATTATT-ATAAGTAGTCATAACTATTTGA
* * *
386913 ACTTGTTCAGCTAAATAAATTT-TTTTTTAAAATTTCTTGCTATTATA
130 ACTAGATCAGC-AAACAAATTTATTTTTTAAAATTTCTTGCTATTATA
* * * * * *
386960 TTTTTAATGTTAATAAATTAGTATTA-ATTATTTTGGATAAGAATGTATGAACTAAACAATTATT
1 TTTTTAATATTAATAAAGTAATATTATATTATTTGGGACAAGAATGTATGAACTAAACAA-T-TG
* * *
387024 TTTATGACTAAACAAAAGGTTAGAATGATTTGAAATAGATAATTATTATTAAGTAGTCTTAATTA
64 TTTA-GA-TAAA-AAAAGGTCAGAATGATTTGAAATAGATAATTATTA-TAAGTAGTCATAACTA
*
387089 TTTGAACTAGATCAGCAAACACATTTATTTTTTAAA
125 TTTGAACTAGATCAGCAAACAAATTTATTTTTTAAA
387125 TACTTATTAA
Statistics
Matches: 135, Mismatches: 21, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
174 26 0.19
175 24 0.18
176 5 0.04
177 2 0.01
178 5 0.04
179 30 0.22
180 10 0.07
181 33 0.24
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.43
Consensus pattern (176 bp):
TTTTTAATATTAATAAAGTAATATTATATTATTTGGGACAAGAATGTATGAACTAAACAATTGTT
TAGATAAAAAAAGGTCAGAATGATTTGAAATAGATAATTATTATAAGTAGTCATAACTATTTGAA
CTAGATCAGCAAACAAATTTATTTTTTAAAATTTCTTGCTATTATA
Found at i:387140 original size:18 final size:18
Alignment explanation
Indices: 387117--387152 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
387107 ACACATTTAT
387117 TTTTTA-AATACTTATTAA
1 TTTTTAGAATA-TTATTAA
387135 TTTTTAGAATATTATTAA
1 TTTTTAGAATATTATTAA
387153 CCTAGCAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.56
Consensus pattern (18 bp):
TTTTTAGAATATTATTAA
Found at i:387452 original size:176 final size:179
Alignment explanation
Indices: 387125--387600 Score: 418
Period size: 176 Copynumber: 2.7 Consensus size: 179
387115 ATTTTTTAAA
* * ** * * * *** ** *
387125 TACTTATTAATTTTTAGAATATTATTAACCTAGCAATATTTTACTGTGAATAAGCTTGTATGAAC
1 TACTTATTAATTTTTAGAATGTTAATAAATTAGTATTATTTTATTACAAATAAATTTGTATGAAT
* * ** ** * * * * *
387190 AGAAACAAATGTTTTAGGACAAAAC-AAAGATCATAATGATTTGAGATAGATAATTGTTTAAATA
66 AAAAACAATTGTTTTACAACAAAACAAAAGATCATAACAATTTGAAATAAATAATAGCTCAAAT-
* * *
387254 GTTACA--ACTATTTAAACTGGTTCAGTAAA-GAGA-TATAGTTTTTAAATC-
130 G-GACATGACGATTTAAACTGGTTCAATAAACGA-ATTA-AGTTTTTAAATCT
*
387302 T-CTTATTAATTTTT-GAAATAG-TAATAAATTA-TATTATTTTATTATAAAT-AATTGTGTATG
1 TACTTATTAATTTTTAG-AAT-GTTAATAAATTAGTATTATTTTATTACAAATAAATT-TGTATG
* * * * *
387362 AATAGAAATAATTGTTTTACAAGAAAATAAAATG-TCATAACAATTTGAAATAGATAATAGCTCA
63 AATAAAAACAATTGTTTTACAACAAAACAAAA-GATCATAACAATTTGAAATAAATAATAGCTCA
* * *
387426 AATGGACATGACGATTTGAACTGGTTCAATAAACTAATTAATTTTTTAAATCT
127 AATGGACATGACGATTTAAACTGGTTCAATAAACGAATTAAGTTTTTAAATCT
* *
387479 TCAACTTATTAATTTTTAGAATGTTAATATATTAGTATTATTTTATTCCAAATAAATTTGTATGA
1 T--ACTTATTAATTTTTAGAATGTTAATAAATTAGTATTATTTTATTACAAATAAATTTGTATGA
* *
387544 ATAAAAACAATTGTTTTATAACAAAACAAAAGATCGTAACAATTTGAAATAAATAAT
64 ATAAAAACAATTGTTTTACAACAAAACAAAAGATCATAACAATTTGAAATAAATAAT
387601 TGTTCAAACA
Statistics
Matches: 241, Mismatches: 40, Indels: 32
0.77 0.13 0.10
Matches are distributed among these distances:
174 5 0.02
175 42 0.17
176 85 0.35
177 6 0.02
179 1 0.00
180 26 0.11
181 72 0.30
182 4 0.02
ACGTcount: A:0.43, C:0.08, G:0.11, T:0.38
Consensus pattern (179 bp):
TACTTATTAATTTTTAGAATGTTAATAAATTAGTATTATTTTATTACAAATAAATTTGTATGAAT
AAAAACAATTGTTTTACAACAAAACAAAAGATCATAACAATTTGAAATAAATAATAGCTCAAATG
GACATGACGATTTAAACTGGTTCAATAAACGAATTAAGTTTTTAAATCT
Found at i:387924 original size:179 final size:178
Alignment explanation
Indices: 386535--387987 Score: 881
Period size: 180 Copynumber: 8.1 Consensus size: 178
386525 AATTGAAATA
* * * * *
386535 CAAATAGTCATAACTATTTGAATTGGTTCGAT-AAACAGATTTATTTTTTAAATCTCCTACTTCT
1 CAAATAGTCATAACTATTTGAACTGGTTC-ATAAAATAGATTTATTTTTAAAAT-T-TTACTTAT
* * *
386599 TAATTTTTGAAAATATTAATAAATTAATATTATTTTATT-ACGAATAAGCTAGGTGTG-AT-GAA
63 TAATTTTTG-AAATATTAATAAATT-ATATTATTTTATTCA-AAATAAGCT-TGTATGAATAGAA
* * * *
386661 A-ATAATG-TTTATGTCAAAA-AAA-GTTCATAATGATTTGAAATAGATAAAATGTT
124 ACA-ATTGTTTTATGACAAAACAAATGGTCATAATGATTTGAAATAGAT-AATTGTT
* * * * * * * *
386714 CCAAATGGCCCTAAAGTTATTTTAACTGATTCGAT-AACTA-ATTTCATGTTTTAAATCTTTTAA
1 -CAAATAGTCAT-AA-CTATTTGAACTGGTTC-ATAAAATAGATTT-AT-TTTTAAA-ATTTT-A
* * * **** * * **
386777 CTTA-TCATTTTT-TAATATTAATAAAGTAATATTATTTTATTTGGGACAAGCTTTTATG-ATCT
58 CTTATTAATTTTTGAAATATTAATAAA-TTATATTATTTTATTCAAAATAAGCTTGTATGAATAG
* * * *
386839 AAACAATTG-TTTA-GATAAAA-AAA-GGTCATAATGATTTTAGATAGATAATTATT
122 AAACAATTGTTTTATGACAAAACAAATGGTCATAATGATTTGAAATAGATAATTGTT
* * * *
386892 CAAATAGTCATAACTATTTGAACTTGTTCAGCT-AAATAAATTTTTTTTTAAAATTTCTTGC-TA
1 CAAATAGTCATAACTATTTGAACTGGTTCA--TAAAATAGATTTATTTTTAAAA-TT-TTACTTA
* * **** **
386955 TTATATTTTT--AATGTTAATAAATTAGTATTA-ATTATTTTGGATAAGAATGTATGAACT--AA
62 TTA-ATTTTTGAAATATTAATAAATTA-TATTATTTTATTCAAAATAAGCTTGTATGAA-TAGAA
* * * * * *
387015 ACAATTATTTTTATGACTAAACAAAAGGTTAGAATGATTTGAAATAGATAATTATT
124 ACAATT-GTTTTATGACAAAACAAATGGTCATAATGATTTGAAATAGATAATTGTT
* * * * ** * * *
387071 -ATTAAGTAGTCTTAATTATTTGAACTAGATCAGCAAACACATTTATTTTTTAAA---TACTTAT
1 CA--AA-TAGTCATAACTATTTGAACTGGTTCATAAAATAGATTTATTTTTAAAATTTTACTTAT
* ** * * * *** *
387132 TAATTTTT-AGAATATTATTAACCTAGCAATATTTTACTGTGAATAAGCTTGTATGAACAGAAAC
63 TAATTTTTGA-AATATTAATAAATTA-TATTATTTTATTCAAAATAAGCTTGTATGAATAGAAAC
* * * *
387196 AAATGTTTTAGGACAAAACAAA-GATCATAATGATTTGAGATAGATAATTGTT
126 AATTGTTTTATGACAAAACAAATGGTCATAATGATTTGAAATAGATAATTGTT
* * * * * * *
387248 TAAATAGTTACAACTATTTAAACTGGTTCAGT-AAAGAGATATAGTTTTT-AAA-TCT-CTTATT
1 CAAATAGTCATAACTATTTGAACTGGTTCA-TAAAATAGATTTA-TTTTTAAAATTTTACTTATT
* * *
387309 AATTTTTGAAATAGTAATAAATTATATTATTTTATT-ATAAATAA-TTGTGTATGAATAGAAATA
64 AATTTTTGAAATATTAATAAATTATATTATTTTATTCA-AAATAAGCT-TGTATGAATAGAAACA
** * * ** * *
387372 ATTGTTTTACAAGAAAATAAAAT-GTCATAACAATTTGAAATAGATAATAGCT
127 ATTGTTTTATGACAAAA-CAAATGGTCATAATGATTTGAAATAGATAATTGTT
* * * * * * * *
387424 CAAATGGACATGACGATTTGAACTGGTTCAATAAACTA-ATTAATTTTTTAAATCTTCAACTTAT
1 CAAATAGTCATAACTATTTGAACTGGTTC-ATAAAATAGATTTATTTTTAAAAT-TT-TACTTAT
* * * ** *
387488 TAATTTTT-AGAATGTTAATATATTAGTATTATTTTATTCCAAATAAATTTGTATGAATAAAAAC
63 TAATTTTTGA-AATATTAATAAATTA-TATTATTTTATTCAAAATAAGCTTGTATGAATAGAAAC
* * * * ** *
387552 AATTGTTTTATAACAAAACAAAAGATCGTAACAATTTGAAATAAATAATTGTT
126 AATTGTTTTATGACAAAACAAATGGTCATAATGATTTGAAATAGATAATTGTT
* * *** * * * *
387605 CAAACAATCATAACTATTTGAACTCACTCGGT-AAATAAATTTATTTTTTAAATATTTTATTTAC
1 CAAATAGTCATAACTATTTGAACTGGTTC-ATAAAATAGATTTA-TTTTTAAA-ATTTTACTTAT
* * * *
387669 TAA-TTTTGGAATATTAATTAATTGGA-ATTATTTTATTCCAAATAAGCTTGTTTGAATAGAAAC
63 TAATTTTTGAAATATTAATAAATT--ATATTATTTTATTCAAAATAAGCTTGTATGAATAGAAAC
* * *
387732 AATTGGTTTATGACAAAACAGATGGTCATAATGATTTGAAATATATAATTGTT
126 AATTGTTTTATGACAAAACAAATGGTCATAATGATTTGAAATAGATAATTGTT
*
387785 CAAATAGTCATAACTATTTGAA-TGTGTTC-TAAAATAGCTTTATTTTCTAAAATTTTACTTATT
1 CAAATAGTCATAACTATTTGAACTG-GTTCATAAAATAGATTTATTTT-TAAAATTTTACTTATT
* * * *
387848 AATTTTTGAAATATTAATAAATTTATATTATTTTATTCAAAATACGCTCGCATGAATAGAACCAA
64 AATTTTTGAAATATTAATAAA-TTATATTATTTTATTCAAAATAAGCTTGTATGAATAGAAACAA
*
387913 TTGTTTTATGACAAAACAAAAT-GTCATAATGTTTTGAAATAGATAATTGTT
128 TTGTTTTATGACAAAAC-AAATGGTCATAATGATTTGAAATAGATAATTGTT
* * *
387964 TAGATAGTCATAACTATTTCAACT
1 CAAATAGTCATAACTATTTGAACT
387988 TGATCGATAA
Statistics
Matches: 991, Mismatches: 211, Indels: 142
0.74 0.16 0.11
Matches are distributed among these distances:
174 31 0.03
175 124 0.13
176 111 0.11
177 63 0.06
178 63 0.06
179 192 0.19
180 220 0.22
181 133 0.13
182 40 0.04
183 13 0.01
184 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (178 bp):
CAAATAGTCATAACTATTTGAACTGGTTCATAAAATAGATTTATTTTTAAAATTTTACTTATTAA
TTTTTGAAATATTAATAAATTATATTATTTTATTCAAAATAAGCTTGTATGAATAGAAACAATTG
TTTTATGACAAAACAAATGGTCATAATGATTTGAAATAGATAATTGTT
Found at i:388072 original size:92 final size:92
Alignment explanation
Indices: 387905--388079 Score: 215
Period size: 92 Copynumber: 1.9 Consensus size: 92
387895 TCGCATGAAT
* ** *** * * *
387905 AGAACCAATTGTTTTATGACAAAACAAAATGTCATAATGTTTTGAAATAGATAATTGTTTAGATA
1 AGAAACAATTGTTTTACAACAAAACAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATA
* *
387970 GTCATAACTATTTCAACTTGATCGATA
66 GACACAACTATTTCAACTTGATCGATA
* *
387997 AGAAACAATTGTTTTACAACAAAATAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATG
1 AGAAACAATTGTTTTACAACAAAACAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATA
* *
388062 GACACGACTATTTGAACT
66 GACACAACTATTTCAACT
388080 AGTTCGGTAA
Statistics
Matches: 68, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
92 68 1.00
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (92 bp):
AGAAACAATTGTTTTACAACAAAACAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATA
GACACAACTATTTCAACTTGATCGATA
Found at i:388399 original size:178 final size:178
Alignment explanation
Indices: 387997--388618 Score: 589
Period size: 178 Copynumber: 3.5 Consensus size: 178
387987 TTGATCGATA
** * ** * *
387997 AGAAACAATTGTTTTACAACAAAATAAAAT-GTCATAACAATTTGAAATAGATAATAGTTCAAAT
1 AGAAACAATTGTTTTATGACAAAA-CAAATGGTCATAATGATTTGAAATAGATAATTGTTTAAAT
* * ** *
388061 GGACACGACTATTTGAACTAGTTCGGTAAACTAATTAATTTTTT-AAATCTTCA-ACTTATTAAT
65 AGTCATAACTATTTGAACTA-CTCGGTAAAC-AA--AATTTTTTAAAATCTT-ATACTTATTAAT
* * * * *
388124 TTTTAGAATGTTAA-TATATTAGTATTATTTTATTCCAAGTAAACTTGTATAAAT
125 TTTTGGAATATTAATTA-ATTAGTATTATTTTATTCCAAATAAGCTTGTATGAAT
* * * * * *
388178 AGAAACAATTGTTTTATAACAAAATAAAAGATCATAATGATTTGAAATAAATAATTGTTTAAACA
1 AGAAACAATTGTTTTATGACAAAACAAATGGTCATAATGATTTGAAATAGATAATTGTTTAAATA
* *
388243 ATCATAACTATTTGAACTCACTCGGTAAACAAAATTTTTTAAAATCTTTTACTTATTAA-TTTTG
66 GTCATAACTATTTGAACT-ACTCGGTAAACAAAATTTTTTAAAATCTTATACTTATTAATTTTTG
* *
388307 GAATATTAATTAATTAGAATTATTTTATTCCAAATAAGCTTGTTTGAAT
130 GAATATTAATTAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAAT
* * * *
388356 AGAAACAATTGGTTTATGATAAAACAAATGGTCATAGTGATTTGAAATAGATAATTGTTCAAATA
1 AGAAACAATTGTTTTATGACAAAACAAATGGTCATAATGATTTGAAATAGATAATTGTTTAAATA
* * * *** *** *
388421 GTTATAACTATTTGAATTTGCTCAAAAAATAGCTTTATTTTCTAAAA--TTATACTTATTAATTT
66 GTCATAACTATTTGAA-CTACTC-GGTAA-A-CAAAATTTTTTAAAATCTTATACTTATTAATTT
* * * *
388484 TTGGAATATTAATAAATTTA-TATTATTTTATT-CAAATTATGCTTGCATGAAC
127 TTGGAATATTAATTAA-TTAGTATTATTTTATTCCAAA-TAAGCTTGTATGAAT
* * * *
388536 ATAACCAATTGTTTTATGACAAAACAAAAT-GTCATAATGTTTTGAAATAGATAATTGTTTAGAT
1 AGAAACAATTGTTTTATGACAAAAC-AAATGGTCATAATGATTTGAAATAGATAATTGTTTAAAT
*
388600 AGTCATAACTATTTCAACT
65 AGTCATAACTATTTGAACT
388619 TGATCGATAA
Statistics
Matches: 365, Mismatches: 63, Indels: 28
0.80 0.14 0.06
Matches are distributed among these distances:
178 124 0.34
179 38 0.10
180 111 0.30
181 91 0.25
182 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (178 bp):
AGAAACAATTGTTTTATGACAAAACAAATGGTCATAATGATTTGAAATAGATAATTGTTTAAATA
GTCATAACTATTTGAACTACTCGGTAAACAAAATTTTTTAAAATCTTATACTTATTAATTTTTGG
AATATTAATTAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAAT
Found at i:388402 original size:451 final size:450
Alignment explanation
Indices: 387544--388433 Score: 1055
Period size: 451 Copynumber: 2.0 Consensus size: 450
387534 ATTTGTATGA
* * *
387544 ATAAAAACAATTGTTTTATAACAAAACAAAAGATCGTAACAATTTGAAATAAATAATTGTTCAAA
1 ATAAAAACAATTGTTTTACAACAAAACAAAAGATCATAACAATTTGAAATAAATAATAGTTCAAA
* * ** *
387609 CAATCATAACTATTTGAACTCACTCGGTAAATAAATTTATTTTTTAAATATTTTATTTACTAATT
66 CAATCACAACTATTTGAACTCACTCGGTAAATAAATTAATTTTTTAAATATTCAACTTACTAATT
* * * * *
387674 TTGGAATATTAATTAATTGGAATTATTTTATTCCAAATAAGCTTGTTTGAATAGAAACAATTGGT
131 TTAGAATATTAATTAATTAGAATTATTTTATTCCAAATAAACTTGTATAAATAGAAACAATTGGT
* * * * * * *
387739 TTATGACAAAACAGATGGTCATAATGATTTGAAATATATAATTGTTCAAATAGTCATAACTATTT
196 TTATAACAAAACAAAAGATCATAATGATTTGAAATAAATAATTGTTCAAACAATCATAACTATTT
*** * ***
387804 GAATGTGTTCTAAAATAGCTTTATTTTCTAAAATTTTACTTATTAATTTTTGAAATATTAATAAA
261 GAATGCACTCGAAAATAGCAAAATTTTCTAAAATTTTACTTATTAATTTTTGAAATATTAATAAA
* * * *
387869 TTTATATTATTTTATTCAAAATACGCTCGCATGAATAGAACCAATTGTTTTATGACAAAACAAAA
326 TTTAAATTATTTTATTCAAAATAAGCTCGCATGAATAGAAACAATTGGTTTATGACAAAACAAAA
* * *
387934 TGTCATAATGTTTTGAAATAGATAATTGTTTAGATAGTCATAACTATTTCAACTTGATCG
391 TGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTCAACTTGATCG
* *
387994 ATAAGAAACAATTGTTTTACAACAAAATAAAATG-TCATAACAATTTGAAATAGATAATAGTTCA
1 ATAA-AAACAATTGTTTTACAACAAAACAAAA-GATCATAACAATTTGAAATAAATAATAGTTCA
** * * * *
388058 AATGGA-CACGACTATTTGAACT-AGTTCGGTAAACT-AATTAATTTTTTAAATCTTCAACTTAT
64 AA-CAATCACAACTATTTGAACTCA-CTCGGTAAA-TAAATTAATTTTTTAAATATTCAACTTAC
* * *
388120 TAATTTTTAGAATGTTAA-TATATTAGTATTATTTTATTCCAAGTAAACTTGTATAAATAGAAAC
126 TAA-TTTTAGAATATTAATTA-ATTAGAATTATTTTATTCCAAATAAACTTGTATAAATAGAAAC
* * *
388184 AATTGTTTTATAACAAAATAAAAGATCATAATGATTTGAAATAAATAATTGTTTAAACAATCATA
189 AATTGGTTTATAACAAAACAAAAGATCATAATGATTTGAAATAAATAATTGTTCAAACAATCATA
** * *
388249 ACTATTTGAACT-CACTCGGTAA-A-CAAAATTTTTTAAAATCTTTTACTTATTAA-TTTTGGAA
254 ACTATTTGAA-TGCACTCGAAAATAGCAAAATTTTCTAAAA--TTTTACTTATTAATTTTTGAAA
* * * **
388310 TATTAATTAA-TTAGAATTATTTTATTCCAAATAAGCTTGTTTGAATAGAAACAATTGGTTTATG
316 TATTAATAAATTTA-AATTATTTTATTCAAAATAAGCTCGCATGAATAGAAACAATTGGTTTATG
* * *
388374 ATAAAAC-AAATGGTCATAGTGATTTGAAATAGATAATTGTTCAAATAGTTATAACTATTT
380 ACAAAACAAAAT-GTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTT
388434 GAATTTGCTC
Statistics
Matches: 368, Mismatches: 60, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
450 23 0.06
451 210 0.57
452 134 0.36
453 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.39
Consensus pattern (450 bp):
ATAAAAACAATTGTTTTACAACAAAACAAAAGATCATAACAATTTGAAATAAATAATAGTTCAAA
CAATCACAACTATTTGAACTCACTCGGTAAATAAATTAATTTTTTAAATATTCAACTTACTAATT
TTAGAATATTAATTAATTAGAATTATTTTATTCCAAATAAACTTGTATAAATAGAAACAATTGGT
TTATAACAAAACAAAAGATCATAATGATTTGAAATAAATAATTGTTCAAACAATCATAACTATTT
GAATGCACTCGAAAATAGCAAAATTTTCTAAAATTTTACTTATTAATTTTTGAAATATTAATAAA
TTTAAATTATTTTATTCAAAATAAGCTCGCATGAATAGAAACAATTGGTTTATGACAAAACAAAA
TGTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTCAACTTGATCG
Found at i:388942 original size:146 final size:144
Alignment explanation
Indices: 388782--389061 Score: 325
Period size: 144 Copynumber: 1.9 Consensus size: 144
388772 TACATGGACG
** *
388782 ATTTGAACTTGTTCAACAAACA-TTTTATTTTTTAAACTCTTTTACTTATAAATTGTGGAAATAT
1 ATTTGAACTTGTTCAACAAACAGAATTA-TTTTTAAA-TCTTTTACTTATAAATTGTCGAAAT-T
** **
388846 TAATAAATA-ATATTATTTTTATTCTGAAGAAGC-TAGTATGAACA-AAAACAATTGTTTTATGA
63 TAATAAATATATATTA-TTTTATTCAAAAGAAGCTTA-TATGAACAGAAAA-AATCATTTTATGA
388908 CAAAACAAAAAGTCATAACT
125 CAAAACAAAAAGTCATAACT
** * * * **
388928 ATTTGAACTTGTTCAGTAAATAGAATTATTTTTAAATCTTTTATTTATTAATTGTCTTAATTTAA
1 ATTTGAACTTGTTCAACAAACAGAATTATTTTTAAATCTTTTACTTATAAATTGTCGAAATTTAA
* * *
388993 TAAATATGTATTATTTTATTCAAAATAAGCTTATATGAACAGAAAAAATCATTTTATGACAAAGC
66 TAAATATATATTATTTTATTCAAAAGAAGCTTATATGAACAGAAAAAATCATTTTATGACAAAAC
389058 AAAA
131 AAAA
389062 GGTTATAGCA
Statistics
Matches: 113, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
144 52 0.46
145 31 0.27
146 27 0.24
147 3 0.03
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.41
Consensus pattern (144 bp):
ATTTGAACTTGTTCAACAAACAGAATTATTTTTAAATCTTTTACTTATAAATTGTCGAAATTTAA
TAAATATATATTATTTTATTCAAAAGAAGCTTATATGAACAGAAAAAATCATTTTATGACAAAAC
AAAAAGTCATAACT
Found at i:389277 original size:181 final size:179
Alignment explanation
Indices: 388913--389739 Score: 571
Period size: 181 Copynumber: 4.6 Consensus size: 179
388903 TATGACAAAA
* * * * *
388913 CAAAAAGTCATAACTATTTGAACTTGTTCAGTAAATAGAATTA-TTTTTAAATCTTTTATTTATT
1 CAAATAGTCATAACTATTTAAACTTGTTCAGTAAACAG-ATTATTTTTTAAATCTCTTACTTATT
* ** * * *
388977 AATTGTCTTAAT-TTAATAAATATGTATTATTTTATTCAAAATAAGCTTATATGAACAGAAAAAA
65 AATTTTCAAAATATTAATAATTA-ATATTATTTTATTCAAAATAAGCTTATATGAATAGAAAAAA
* * * ** *
389041 TCATTTTATGACA-AAGCAAAAGGTTATAGCAATTTCCAATAAATAATTTTT
129 TTATTTTATGACAGAAG-AAAAGGTCATAACAATTTGAAATAAATAATTATT
* * * *
389092 CAAATAATTATAATTATTTAAACTTGTTCAGTAAACAGATTCATTTTTTAAATCTCTTAATTATT
1 CAAATAGTCATAACTATTTAAACTTGTTCAGTAAACAGATT-ATTTTTTAAATCTCTTACTTATT
* * *
389157 AATTTTCAAAATATTAATAACTTAATATTATTTTATTTC-GAATAAGCTTATATGAATTGAAATA
65 AATTTTCAAAATATTAATAA-TTAATATTATTTTA-TTCAAAATAAGCTTATATGAATAGAAAAA
* * * *
389221 ATTTTTTTATGATAGAAGAAAAGGTCATAACGATTTGAAATAGATAATTATT
128 ATTATTTTATGACAGAAGAAAAGGTCATAACAATTTGAAATAAATAATTATT
* ** * * * * * * *
389273 CAAATAGTCATAACTGTTGGATCTAGTTCAATAAACATATTTAATTTTTTACATTTTTTACTTAT
1 CAAATAGTCATAACTATTTAAACTTGTTCAGTAAACAGA-TT-ATTTTTTAAATCTCTTACTTAT
* * * ** * *
389338 TAATTGTCAAAATATTAATAAATTTATATTATTTTAATCTGAATAAGCTTGA-ATAAATAGAAAC
64 TAATTTTCAAAATATTAAT-AATTAATATTATTTTATTCAAAATAAGCTT-ATATGAATAGAAAA
* * * * * ** **
389402 TATTATCTTATAATAGAA-CAAA-GTCATAATGATTTGAAATAAATAACTGCTT
127 AATTATTTTATGACAGAAGAAAAGGTCATAACAATTTGAAATAAATAA-TTATT
* ** * * *
389454 -AAATAGTC-TTA--ATTTAAACCAGTT-TGATAAATAGATTTATTTTTTAAA-AT-TT--TTAT
1 CAAATAGTCATAACTATTTAAACTTGTTCAG-TAAACAGA-TTATTTTTTAAATCTCTTACTTAT
** * * * * *
389510 TAATTTTTGAAATATTAATATATTAGTATTGTTTTATTTCAAACA-AA-CTTGTAAGAACA-AAA
64 TAATTTTCAAAATATTAATA-ATTAATATTATTTTA-TTCAAA-ATAAGCTTATATGAATAGAAA
* * * * * *
389572 ACATTAGTTTTATGACAAAACAAATGGTCATAACAATTTGAAATAGATAATTGTT
126 AAATTA-TTTTATGACAGAAGAAAAGGTCATAACAATTTGAAATAAATAATTATT
* * *
389627 CAAATAGTCATAATTATTTAAAC-TGCTT-AGGTAAACATAATTATTTTTTAATTCTCTTACTTA
1 CAAATAGTCATAACTATTTAAACTTG-TTCA-GTAAACA-GATTATTTTTTAAATCTCTTACTTA
** * * * * *
389690 TTAATTTTTGAAATTTTAATCATTTTATTTTATTTTATTCTAAATAAGCT
63 TTAATTTTCAAAATATTAAT-AATTAATATTATTTTATTCAAAATAAGCT
389740 AGTATTATTT
Statistics
Matches: 506, Mismatches: 109, Indels: 64
0.75 0.16 0.09
Matches are distributed among these distances:
171 8 0.02
172 48 0.09
173 10 0.02
174 32 0.06
175 3 0.01
176 10 0.02
177 43 0.08
178 6 0.01
179 38 0.08
180 65 0.13
181 147 0.29
182 93 0.18
183 3 0.01
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (179 bp):
CAAATAGTCATAACTATTTAAACTTGTTCAGTAAACAGATTATTTTTTAAATCTCTTACTTATTA
ATTTTCAAAATATTAATAATTAATATTATTTTATTCAAAATAAGCTTATATGAATAGAAAAAATT
ATTTTATGACAGAAGAAAAGGTCATAACAATTTGAAATAAATAATTATT
Found at i:390171 original size:181 final size:177
Alignment explanation
Indices: 389756--390389 Score: 563
Period size: 181 Copynumber: 3.5 Consensus size: 177
389746 ATTTTAATAG
* * * *
389756 ATTAGTATTATTTTATTTCAAATAAACTTATATGAACAAAA-ACATTAGTTTTATGACAAAACAA
1 ATTAGTATTATTTTATTTCAAATAAGCTTGTATGAAAAAAATAC-TT-GTATTATGACAAAACAA
* * * * * * *
389820 AAAGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAATTCTTTAAACTGGTTAGGTA
64 AAGGTTATAACAATTTGAAATAGATAATTATTCATATAGTCATAACTATTTGAACTGGTTA-GTA
* * * * * *
389885 AA-TATAATTA-TTTTTAATTCTCTTATTA--ATTTTTGAAATTTTAATAA
128 AACAAT-TTTATTTTTTAAATCTCTTATTATTAATTTTGAAATATTATTAA
* * * *
389932 ATT--TATTTATTTTA-ATCTAAATAAGCTAGTATGAATTGAAAATA-TTGTTTTATGACAAAAC
1 ATTAGTA-TTATTTTATTTC-AAATAAGCTTGTATGAA--AAAAATACTTGTATTATGACAAAAC
** ** * *
389993 AAAAGGTTATAATGATTTGAAATAGATAATTATTCATATAGTTTTAACTATTTGAACTAGTTCAA
62 AAAAGGTTATAACAATTTGAAATAGATAATTATTCATATAGTCATAACTATTTGAACTGGTT-AG
* * *
390058 CAAACAATTTTATTTTTTAAATCTCTTAGTTATTAATTTTCATAATATTATTAG
126 TAAACAATTTTATTTTTTAAATCTCTTA-TTATTAATTTTGA-AATATTATTAA
*
390112 ATTAGTTTTATTTTATTTCAAATAAGCTTGTATGAAAAGAAATACTTGTATTATGACAAAACAAA
1 ATTAGTATTATTTTATTTCAAATAAGCTTGTATGAAAA-AAATACTTGTATTATGACAAAACAAA
* * * * * * *
390177 AGGTTATAACAATTTGAAGTATACAACTGTTC-TAATAGTCATAACTATTTGAATTGGTTTTGTA
65 AGGTTATAACAATTTGAAATAGATAATTATTCAT-ATAGTCATAACTATTTGAACTGG-TTAGTA
* * *
390241 AACTGA-TTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAAGATTAATAAA
128 AAC-AATTTTATTTTTTAAATCTCTTA-TTATTAA-TTTTGAAATATT-ATTAA
* * * * *
390294 ATTAGTATTATTTTATTCCAAATAAGCTTGTATGATCAAAAACAATTGTCA-TATGACCAAACAA
1 ATTAGTATTATTTTATTTCAAATAAGCTTGTATGA-AAAAAATACTTGT-ATTATGACAAAACAA
* * *
390358 AAGGTAAGAATAATTTGAAATAGATAATTATT
64 AAGGTTATAACAATTTGAAATAGATAATTATT
390390 GAAATGGCCA
Statistics
Matches: 368, Mismatches: 66, Indels: 42
0.77 0.14 0.09
Matches are distributed among these distances:
174 4 0.01
175 93 0.25
176 22 0.06
177 7 0.02
178 1 0.00
179 7 0.02
180 17 0.05
181 123 0.33
182 91 0.25
183 3 0.01
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (177 bp):
ATTAGTATTATTTTATTTCAAATAAGCTTGTATGAAAAAAATACTTGTATTATGACAAAACAAAA
GGTTATAACAATTTGAAATAGATAATTATTCATATAGTCATAACTATTTGAACTGGTTAGTAAAC
AATTTTATTTTTTAAATCTCTTATTATTAATTTTGAAATATTATTAA
Found at i:390283 original size:581 final size:578
Alignment explanation
Indices: 389182--390326 Score: 1267
Period size: 581 Copynumber: 2.0 Consensus size: 578
389172 AATAACTTAA
* * * * * * * * *
389182 TATTATTTTATTTCGAATAAGCTTATATGAATTGAAATAATTTTTTTATGATAGAAGAAAAGGTC
1 TATTATTTTATTTCAAATAAACTTATATGAA-TCAAAAAATTGTTTTATGACAAAACAAAAAGTC
* * * *
389247 ATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTGTTGGATCTAGTTCAATAAACATA
65 ATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTCTTGAAACTAGTTCAATAAACATA
* *
389312 TTTAATTTTTTACATTTTTTACTTATTAATTGTCAAAATATTAATAAATTTATATTATTTTAATC
130 ATTAATTTTTTACA-TTTCTACTTATTAATTGTCAAAATATTAATAAATTTATATTATTTTAATC
* * * * *
389377 TGAATAAGCTTGAATAAATAGAAACTATTATCTTATAATAGAACAAAGTCATAATGATTTGAAAT
194 TAAATAAGCTAGAATAAATAGAAAATATTATCTTATAACAAAACAAAGTCATAATGATTTGAAAT
* ** * *
389442 AAATAACTGCTTAAATAGTCTTAATTTAAACCAGTTTGATAAATAGATTTATTTTTTAAAATTTT
259 AAATAACTGATTAAATAGTCTTAATTTAAACCAGTTCAACAAACAGATTTATTTTTTAAAATTTT
* * * *
389507 TATTAATTTTTGAAATATTAATATATTAGTATTGTTTTATTTCAAACAAACTTGTAAGAACAAAA
324 TATTAATTTTTCAAATATTAATAGATTAGTATTATTTTATTTCAAACAAACTTGTAAGAAAAAAA
* * * *
389572 ACATTAGTTTTATGACAAAACAAATGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCA
389 ACATTAGTATTATGACAAAACAAAAGGTCATAACAATTTGAAATAGACAACTGTTCAAATAGTCA
* *
389637 TAATTATTTAAACTGCTTAGGTAAACATAATTATTTTTTAATTCTCTTACTTATTAATTTTTGAA
454 TAACTATTTAAACTGCTTAGGTAAACATAATTATTTTTTAAATCTCTTACTTATTAATTTTTGAA
** * ** * *
389702 ATTTTAATCATTTTA-TTTTATTTTATTCTAAATAAGCTAGTATTATTTTAATAGATTAG
519 AGATTAATAAAATTAGTATTATTTTATTCCAAATAAGCTAGTATTATTTTAATAGATTAG
389761 TATTATTTTATTTCAAATAAACTTATATGAA-CAAAAACATTAGTTTTATGACAAAACAAAAAGT
1 TATTATTTTATTTCAAATAAACTTATATGAATCAAAAA-ATT-GTTTTATGACAAAACAAAAAGT
* * * * * *
389825 CATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAATTCTTTAAACTGGTT-AGGTAAATA
64 CATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTCTTGAAACTAGTTCA-ATAAACA
* ** *
389889 TAATT-A-TTTTTA-A-TTCT-CTTATTAATTTTTGAAATTTTAATAAATTTAT-TTATTTTAAT
128 TAATTAATTTTTTACATTTCTACTTATTAATTGTCAAAATATTAATAAATTTATATTATTTTAAT
* * * * * * *
389948 CTAAATAAGCTAGTATGAATTGAAAATATTGTTTTATGACAAAACAAAAGGTTATAATGATTTGA
193 CTAAATAAGCTAGAATAAATAGAAAATATTATCTTATAACAAAAC-AAA-GTCATAATGATTTGA
* * * * * *
390013 AATAGATAA-TTATTCATATAGTTTTAACTATTTGAACTAGTTCAACAAACA-ATTTTATTTTTT
256 AATAAATAACTGATT-AAATAGTCTT-A--ATTTAAACCAGTTCAACAAACAGA-TTTATTTTTT
* * * * *
390076 AAATCTCTTAGTTATTAA-TTTTCATAATATTATTAGATTAGTTTTATTTTATTTCAAATAAGCT
316 AAA-AT-TT--TTATTAATTTTTCA-AATATTAATAGATTAGTATTATTTTATTTCAAACAAACT
* * * *
390140 TGTATGAAAAGAAATAC-TT-GTATTATGACAAAACAAAAGGTTATAACAATTTGAAGTATACAA
376 TGTAAGAAAA-AAA-ACATTAGTATTATGACAAAACAAAAGGTCATAACAATTTGAAATAGACAA
* * * * ** *
390203 CTGTTCTAATAGTCATAACTATTTGAATTGGTTTTGTAAAC-TGATTTATTTTTTAAATCTCTTA
439 CTGTTCAAATAGTCATAACTATTTAAACTGCTTAGGTAAACAT-AATTATTTTTTAAATCTCTTA
*
390267 CTTATTAATTTTTGAAAGATTAATAAAATTAGTATTATTTTATTCCAAATAAGCTTGTAT
503 CTTATTAATTTTTGAAAGATTAATAAAATTAGTATTATTTTATTCCAAATAAGCTAGTAT
390327 GATCAAAAAC
Statistics
Matches: 465, Mismatches: 82, Indels: 35
0.80 0.14 0.06
Matches are distributed among these distances:
572 44 0.09
573 34 0.07
574 33 0.07
575 1 0.00
576 2 0.00
577 39 0.08
578 6 0.01
579 104 0.22
580 6 0.01
581 164 0.35
582 30 0.06
583 2 0.00
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (578 bp):
TATTATTTTATTTCAAATAAACTTATATGAATCAAAAAATTGTTTTATGACAAAACAAAAAGTCA
TAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTCTTGAAACTAGTTCAATAAACATAA
TTAATTTTTTACATTTCTACTTATTAATTGTCAAAATATTAATAAATTTATATTATTTTAATCTA
AATAAGCTAGAATAAATAGAAAATATTATCTTATAACAAAACAAAGTCATAATGATTTGAAATAA
ATAACTGATTAAATAGTCTTAATTTAAACCAGTTCAACAAACAGATTTATTTTTTAAAATTTTTA
TTAATTTTTCAAATATTAATAGATTAGTATTATTTTATTTCAAACAAACTTGTAAGAAAAAAAAC
ATTAGTATTATGACAAAACAAAAGGTCATAACAATTTGAAATAGACAACTGTTCAAATAGTCATA
ACTATTTAAACTGCTTAGGTAAACATAATTATTTTTTAAATCTCTTACTTATTAATTTTTGAAAG
ATTAATAAAATTAGTATTATTTTATTCCAAATAAGCTAGTATTATTTTAATAGATTAG
Found at i:390440 original size:182 final size:183
Alignment explanation
Indices: 389756--390448 Score: 612
Period size: 182 Copynumber: 3.9 Consensus size: 183
389746 ATTTTAATAG
* * * * *
389756 ATTAGTATTATTTTATTTCAAATAAACTTATATGAACAAAAAC-ATTAGTTTTATGACAAAACAA
1 ATTAGTATTATTTTATTCCAAATAAGCTTGTATGATCAAAAACAATT-GTTATATGACAAAACAA
* * * * * * *
389820 AAAGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAATTCTTTAAACTGGTTAGGTA
65 AAGGTTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTGATTTGGTA
* *
389885 AATATAA-TTA-TTTTT-AAT-TC-T-CTTATTAATTTTTGAAATTTTAATAAA
130 AACATAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAA
* * * * ** * *
389933 TTTA-T-TTATTTTAATCTAAATAAGCTAGTATGAATTGAAAA-TATTGTTTTATGACAAAACAA
1 ATTAGTATTATTTTATTCCAAATAAGCTTGTATG-ATCAAAAACAATTGTTATATGACAAAACAA
** * ** * ****
389995 AAGGTTATAATGATTTGAAATAGATAATTATTCATATAGTTTTAACTATTTGAACT-AGTTCAAC
65 AAGGTTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTGA-TTTGGT
* * * * *
390059 AAACA-ATTTTATTTTTTAAATCTCTTAGTTATTAA-TTTTCATAATATT-ATTAG
129 AAACATAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGA-AATATTAATAAA
* * * * *
390112 ATTAGTTTTATTTTATTTCAAATAAGCTTGTATGA-AAAGAAATACTTG-TATTATGACAAAACA
1 ATTAGTATTATTTTATTCCAAATAAGCTTGTATGATCAA-AAACAATTGTTA-TATGACAAAACA
* * * * * * * * * *
390175 AAAGGTTATAACAATTTGAAGTATACAACTGTTCTAATAGTCATAACTATTTGAATTGGTTTTGT
64 AAAGGTTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTGATTTGGT
* *
390240 AAAC-TGATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAAGATTAATAAA
129 AAACATAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAA
* *
390294 ATTAGTATTATTTTATTCCAAATAAGCTTGTATGATCAAAAACAATTGTCATATGACCAAACAAA
1 ATTAGTATTATTTTATTCCAAATAAGCTTGTATGATCAAAAACAATTGTTATATGACAAAACAAA
* * * * * * *
390359 AGGTAAGAATAATTTGAAATAGATAATTATTGAAATGGCCATAATTATTTAAACTGATTTGGTAA
66 AGGTTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTGATTTGGTAA
* * *
390424 ACAT-ATTCACTTTTTAAATCACTTA
131 ACATAATTTATTTTTTAAATCTCTTA
390449 TTTAAATTTG
Statistics
Matches: 400, Mismatches: 94, Indels: 39
0.75 0.18 0.07
Matches are distributed among these distances:
174 1 0.00
175 92 0.23
176 14 0.04
177 6 0.01
178 2 0.00
179 13 0.03
180 18 0.05
181 121 0.30
182 129 0.32
183 4 0.01
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.41
Consensus pattern (183 bp):
ATTAGTATTATTTTATTCCAAATAAGCTTGTATGATCAAAAACAATTGTTATATGACAAAACAAA
AGGTTATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTAAACTGATTTGGTAA
ACATAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAA
Found at i:390665 original size:225 final size:225
Alignment explanation
Indices: 390239--390673 Score: 525
Period size: 225 Copynumber: 1.9 Consensus size: 225
390229 ATTGGTTTTG
* * *
390239 TAAACTGATTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAAGATTAATAAAATTAGTATTA
1 TAAACAGATTTATTTTTTAAATCTCTTACATATTAATTTTTCAAAGATTAATAAAATTAGTATTA
* * *
390304 TTTTATTCCAAATAAGCTTGTATGATCAAAAACAATTGTCATATGACCAAACAAAAGGTAAGAAT
66 ATTTATTCCAAATAAGCTTGTATGAACAAAAACAATTGTCATATGACCAAACAAAAGATAAGAAT
* * ** ** *** *
390369 AATTTGAAATAGATAATTATTGAAATGGCCATAATTATTTAAACTGATTTGGTAAACATATTCAC
131 AATATGAAATAGATAATTATTCAAATAACCATAACCATTTAAACTGATTCAATAAACAAATTCAC
390434 TTTTTAAATCACTTATTTAAATTTGTTCAA
196 TTTTTAAATCACTTATTTAAATTTGTTCAA
*
390464 TAAACAGATTTATTTTTTAAAATCTCTTTCATATTAATTTTTCAAATG-TTAAT-AAATTAGTAT
1 TAAACAGATTTATTTTTT-AAATCTCTTACATATTAATTTTTCAAA-GATTAATAAAATTAGTAT
* ** ** *
390527 TAATTTATTCTAAATAAGCTTGTATGAACTGAAACAATTGTTTTATGACTAAACAAAAGATCAA-
64 TAATTTATTCCAAATAAGCTTGTATGAACAAAAACAATTGTCATATGACCAAACAAAAGAT-AAG
* * * *** *
390591 AATCATATGAAATAGATACTTATTCTAATAATTTTAACCATTTCAACTGATTCAATAAACAAATT
128 AATAATATGAAATAGATAATTATTCAAATAACCATAACCATTTAAACTGATTCAATAAACAAATT
* * *
390656 TATTTTTTAAATCTCTTA
193 CACTTTTTAAATCACTTA
390674 CTTATTAATT
Statistics
Matches: 174, Mismatches: 33, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
225 142 0.82
226 31 0.18
227 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (225 bp):
TAAACAGATTTATTTTTTAAATCTCTTACATATTAATTTTTCAAAGATTAATAAAATTAGTATTA
ATTTATTCCAAATAAGCTTGTATGAACAAAAACAATTGTCATATGACCAAACAAAAGATAAGAAT
AATATGAAATAGATAATTATTCAAATAACCATAACCATTTAAACTGATTCAATAAACAAATTCAC
TTTTTAAATCACTTATTTAAATTTGTTCAA
Found at i:392240 original size:180 final size:180
Alignment explanation
Indices: 391365--392343 Score: 832
Period size: 181 Copynumber: 5.5 Consensus size: 180
391355 AATTTAGTAT
* * * * * * * *
391365 GATTT-AAATAAATAAATGTTCAAATTGTTATAACTAATTAAACTAGTAT-GGTAAATAGATTTA
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGT-TCGATAAATAGATTTA
* ** * *
391428 TTTATTAAATCTCTTA-TTAAT--TTTTGAAATATTAATAAATTAATATTATTTTATTTTGAACA
65 TTTTTTAAATCTCTTACTTAATCATTTTTTAATATTAATAAATTAGTATTATTTTATTTTGAATA
* * * * *
391490 AACTTATATGAACAAAAACATTTGTTTTATGACAAAACAAAAGGTCATAAC
130 AGCTTGTATGAACTAAAACAATTATTTTATGACAAAACAAAAGGTCATAAC
* * * * * *
391541 GATTTGAAATAGATAATTATTCATATAGCCTTAACTATTTGAA-TTGGTTCGGTAAATAAATTTA
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT-GTTCGATAAATAGATTTA
* * * ** * * *
391605 TTTTTTTAAATCTATCAGTTTTAA--ATTTCATAATATTACTAGATTAGTATTATTTTATTTCGA
65 -TTTTTTAAATCTCTTA--CTTAATCATTTTTTAATATTAATAAATTAGTATTATTTTATTTTGA
* * *
391668 ATAAGCTTGTATGAA-GATAAATAATTATTTTATGACAAAACAAAAGGTTATAAC
127 ATAAGCTTGTATGAACTA-AAACAATTATTTTATGACAAAACAAAAGGTCATAAC
* * ** *
391722 -AATTGAAAATATATAATTGTTCAAATAGTCATAACTATTTGAACTAATTCGATAAACAGATTTA
1 GATTTG-AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGATAAATAGATTTA
* * * * *
391786 TTTTTTAAATCTCGTACTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTATGAAT
65 TTTTTTAAATCTCTTACTTAATCATTTTT-TAATATTAATAAATTAGTATTATTTTATTTTGAAT
* *** * * * *
391851 AGGCTTGTATGATGAAAAACAATTCTTTTAT-AAAAAACAAAAGTTCATAAT
129 AAGCTTGTATGAACTAAAACAATTATTTTATGACAAAACAAAAGGTCATAAC
* * * * *
391902 GATTTGAAAT-TATAGTTGTTTAAAT-GGCTATAATTATTTGAAC-TGATTCGATAAACT-GATT
1 GATTTGAAATAGATAATTGTTCAAATAGTC-ATAACTATTTGAACTTG-TTCGATAAA-TAGATT
* * * * *
391963 TATGTTTTAAATCTCTAACTT-ATCAATTTTTATAATATTAATAAAGTAATATTATTTTA-TTTC
63 TATTTTTTAAATCTCTTACTTAATC-ATTTTT-TAATATTAATAAATTAGTATTATTTTATTTTG
* * * * * *
392026 AGATAAGCTT-TATGAACTAAAATAGTTGTTTTATGATAAAATATAAGGTCATAAC
126 A-ATAAGCTTGTATGAACTAAAACAATTATTTTATGACAAAACAAAAGGTCATAAC
* * * *
392081 GATTTTAAATAGATAATTGTTCAAATAGTCAAAAATATTTGAACTTGTTCGGTAAATAGATTT-T
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGATAAATAGATTTAT
* *
392145 TTTTCT-AATTTCTTACTTAATCATTTTTTGAATGTTAATAAATTAGTATTATTTTATTTTGAAT
66 TTTT-TAAATCTCTTACTTAATCATTTTTT-AATATTAATAAATTAGTATTATTTTATTTTGAAT
** * * * *
392209 AAGCATT-TATGAGTTGAAGCAATTATTTTATGACTAAACAAAAGGTCAAAAC
129 AAGC-TTGTATGAACTAAAACAATTATTTTATGACAAAACAAAAGGTCATAAC
* * * ** * * * * *
392261 GATTTGAAATAGATAATTATTCTAATAGTCTTAACTATTTGAACTAATTCAACAAACACATTTGT
1 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGATAAATAGATTTAT
392326 TTTTTAAATC-CTTACTTA
66 TTTTTAAATCTCTTACTTA
392344 TTAATTTAGC
Statistics
Matches: 636, Mismatches: 134, Indels: 62
0.76 0.16 0.07
Matches are distributed among these distances:
176 7 0.01
177 42 0.07
178 41 0.06
179 168 0.26
180 181 0.28
181 195 0.31
182 2 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (180 bp):
GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGATAAATAGATTTAT
TTTTTAAATCTCTTACTTAATCATTTTTTAATATTAATAAATTAGTATTATTTTATTTTGAATAA
GCTTGTATGAACTAAAACAATTATTTTATGACAAAACAAAAGGTCATAAC
Found at i:392484 original size:21 final size:22
Alignment explanation
Indices: 392458--392499 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
392448 TTATAATTTT
*
392458 TTAATTTTAT-AATTAATAATA
1 TTAATTATATAAATTAATAATA
*
392479 TTAATTATATAAATTTATAAT
1 TTAATTATATAAATTAATAAT
392500 TTAGTACAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TTAATTATATAAATTAATAATA
Found at i:392597 original size:20 final size:19
Alignment explanation
Indices: 392563--392668 Score: 58
Period size: 20 Copynumber: 5.3 Consensus size: 19
392553 ATTTGAAACT
* *
392563 TATAATTATACATAATTATA
1 TATAATTTTATATAA-TATA
392583 TATAATTTTATATAATATA
1 TATAATTTTATATAATATA
*
392602 CT-TAATTAGATTATACTAATTTAA
1 -TATAATT---TTATA-TAATAT-A
**
392626 TATAGATTAAATATAAGTAT-
1 TATA-ATTTTATATAA-TATA
392646 TAT-ATTTTATATAATATA
1 TATAATTTTATATAATATA
392664 -ATAAT
1 TATAAT
392669 AAAATAGTAT
Statistics
Matches: 67, Mismatches: 8, Indels: 24
0.68 0.08 0.24
Matches are distributed among these distances:
17 5 0.07
18 11 0.16
19 9 0.13
20 17 0.25
21 3 0.04
22 10 0.15
23 6 0.09
24 3 0.04
25 3 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (19 bp):
TATAATTTTATATAATATA
Found at i:392648 original size:33 final size:30
Alignment explanation
Indices: 392581--392690 Score: 80
Period size: 33 Copynumber: 3.4 Consensus size: 30
392571 TACATAATTA
* *
392581 TATATAATTTTATATAATATACTTAATTAG-AT
1 TATATAATTTAATATAATATA---AAATAGTAT
392613 TATACTAATTTAATATAGAT-TAAATATAAGTAT
1 TATA-TAATTTAATATA-ATATAAA-AT-AGTAT
* *
392646 TATATTTTATATAATATAATAATAAAATAGTAT
1 TATA--TAATTTAATATAAT-ATAAAATAGTAT
392679 TATATAATTTAA
1 TATATAATTTAA
392691 GATATACTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 17
0.72 0.08 0.20
Matches are distributed among these distances:
30 2 0.03
31 7 0.11
32 6 0.10
33 30 0.48
34 14 0.22
35 4 0.06
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (30 bp):
TATATAATTTAATATAATATAAAATAGTAT
Found at i:393240 original size:13 final size:12
Alignment explanation
Indices: 393222--393280 Score: 59
Period size: 12 Copynumber: 4.9 Consensus size: 12
393212 TATAACACAA
393222 TATAATTATATAT
1 TATAATTA-ATAT
393235 TATAATTAATAT
1 TATAATTAATAT
*
393247 T-TATTTAATAT
1 TATAATTAATAT
* *
393258 AATAATAAATAT
1 TATAATTAATAT
393270 TA-ATATTAATA
1 TATA-ATTAATA
393281 ATTAATTTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
11 10 0.26
12 20 0.53
13 8 0.21
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
TATAATTAATAT
Found at i:393270 original size:19 final size:19
Alignment explanation
Indices: 393248--393296 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
393238 AATTAATATT
393248 TATTTAATATAATAATAAA
1 TATTTAATATAATAATAAA
*
393267 TA-TTAATATTAATAATTAA
1 TATTTAATA-TAATAATAAA
393286 T-TTTAAT-TAAT
1 TATTTAATATAAT
393297 TTATTAGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 4 0.15
18 6 0.22
19 17 0.63
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TATTTAATATAATAATAAA
Found at i:393294 original size:23 final size:23
Alignment explanation
Indices: 393224--393296 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
393214 TAACACAATA
393224 TAATTATATATT-ATAATTAATATT
1 TAATTA-ATATTAATAATTAAT-TT
* *
393248 TATTTAATA-TAATAA-TAA--A
1 TAATTAATATTAATAATTAATTT
393267 T-ATTAATATTAATAATTAATTT
1 TAATTAATATTAATAATTAATTT
393289 TAATTAAT
1 TAATTAAT
393297 TTATTAGTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 13
0.70 0.07 0.23
Matches are distributed among these distances:
18 6 0.15
19 7 0.18
20 3 0.08
22 5 0.13
23 13 0.33
24 5 0.13
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TAATTAATATTAATAATTAATTT
Found at i:393475 original size:46 final size:42
Alignment explanation
Indices: 393434--393530 Score: 106
Period size: 43 Copynumber: 2.2 Consensus size: 42
393424 AATTATAATT
* *
393434 ATATAATAAACAATAATATT-ATTTATTCTTTATAGTTATTATA
1 ATATTATAAA-AATAATATTAAGTTATT-TTTATAGTTATTATA
* *
393477 ATATTATAAAAATAGTATTAAGTTATTTTTATAAAATTATTATA
1 ATATTATAAAAATAATATTAAGTTATTTTTAT--AGTTATTATA
393521 TATATTATAA
1 -ATATTATAA
393531 TGTTATATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
42 13 0.28
43 15 0.33
44 9 0.20
45 9 0.20
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (42 bp):
ATATTATAAAAATAATATTAAGTTATTTTTATAGTTATTATA
Found at i:393554 original size:18 final size:18
Alignment explanation
Indices: 393505--393556 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
393495 TAAGTTATTT
393505 TTATAA-AATTATTATATA
1 TTATAATAATT-TTATATA
* *
393523 -TATTATAATGTTATATA
1 TTATAATAATTTTATATA
393540 TTATAATAATTTTATAT
1 TTATAATAATTTTATAT
393557 TATGTTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 11 0.39
18 17 0.61
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
TTATAATAATTTTATATA
Found at i:393858 original size:166 final size:167
Alignment explanation
Indices: 393680--394017 Score: 642
Period size: 166 Copynumber: 2.0 Consensus size: 167
393670 ATCATTTTAT
393680 TTTAAATATAATAAACAATTATCTTATAATATATAAAATTAAATATTATAATAATTATTATGAAT
1 TTTAAATATAATAAACAATTATCTTATAATATATAAAATTAAATATTATAATAATTATTATGAAT
393745 ATTTTTATCATAATAAAATAAATTATATAAGTTGTATACTATTATTTTAATGTTTTATAATATAA
66 ATTTTTATCATAATAAAATAAATTATATAAGTTGTATACTATTATTTTAATGTTTTATAATATAA
393810 TATATATTA-TATTTATAATAGTTAATTAGATACTAA
131 TATATATTATTATTTATAATAGTTAATTAGATACTAA
* *
393846 TTTAAATATAATAAACAATTATCTTGTAATATATAAAATTATATATTATAATAATTATTATGAAT
1 TTTAAATATAATAAACAATTATCTTATAATATATAAAATTAAATATTATAATAATTATTATGAAT
393911 ATTTTTATCATAATAAAATAAATTATATAAGTTGTATACTATTATTTTAATGTTTTATAATATAA
66 ATTTTTATCATAATAAAATAAATTATATAAGTTGTATACTATTATTTTAATGTTTTATAATATAA
*
393976 TATATATTATTATTTATAATAGTTAATTAGATATTAA
131 TATATATTATTATTTATAATAGTTAATTAGATACTAA
394013 TTTAA
1 TTTAA
394018 TAATAAAATA
Statistics
Matches: 168, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
166 137 0.82
167 31 0.18
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.47
Consensus pattern (167 bp):
TTTAAATATAATAAACAATTATCTTATAATATATAAAATTAAATATTATAATAATTATTATGAAT
ATTTTTATCATAATAAAATAAATTATATAAGTTGTATACTATTATTTTAATGTTTTATAATATAA
TATATATTATTATTTATAATAGTTAATTAGATACTAA
Found at i:394066 original size:15 final size:14
Alignment explanation
Indices: 394046--394085 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
394036 TATTAATAAT
394046 TAATTATAATAACAA
1 TAATTATAATAA-AA
*
394061 TAATTATAATAATA
1 TAATTATAATAAAA
394075 T-ATTATAATAA
1 TAATTATAATAA
394086 TTATATTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 10 0.42
14 2 0.08
15 12 0.50
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (14 bp):
TAATTATAATAAAA
Found at i:394312 original size:13 final size:15
Alignment explanation
Indices: 394277--394325 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 15
394267 AATTTTTAGA
394277 AAATATATATTATTATAT
1 AAAT-TATA-TATTAT-T
394295 AAATTATA-ATT-TT
1 AAATTATATATTATT
394308 AAATTATATATTATT
1 AAATTATATATTATT
394323 AAA
1 AAA
394326 ATGAATATAC
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 9 0.31
14 4 0.14
15 8 0.28
17 4 0.14
18 4 0.14
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
AAATTATATATTATT
Found at i:394780 original size:24 final size:24
Alignment explanation
Indices: 394753--394800 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
394743 ATAATTAATT
394753 ATTATATAA-ATATAATATTCATAA
1 ATTAT-TAATATATAATATTCATAA
* *
394777 ATTATTAATATATGATATTTATAA
1 ATTATTAATATATAATATTCATAA
394801 CATATAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (24 bp):
ATTATTAATATATAATATTCATAA
Found at i:394981 original size:11 final size:12
Alignment explanation
Indices: 394945--395022 Score: 56
Period size: 12 Copynumber: 6.3 Consensus size: 12
394935 TATTATCATT
394945 ATTAAAT-TATA
1 ATTAAATATATA
*
394956 TTTTAAATATATA
1 -ATTAAATATATA
394969 ATTAAATAT-TA
1 ATTAAATATATA
394980 ATT-AATAATAGTA
1 ATTAAAT-ATA-TA
*
394993 TATTAATTATATA
1 -ATTAAATATATA
395006 ATTTTAAAT-TATA
1 A--TTAAATATATA
395019 ATTA
1 ATTA
395023 CATTACATAA
Statistics
Matches: 54, Mismatches: 4, Indels: 17
0.72 0.05 0.23
Matches are distributed among these distances:
10 3 0.06
11 10 0.19
12 15 0.28
13 13 0.24
14 11 0.20
15 2 0.04
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (12 bp):
ATTAAATATATA
Found at i:395158 original size:7 final size:6
Alignment explanation
Indices: 395145--395218 Score: 52
Period size: 6 Copynumber: 12.5 Consensus size: 6
395135 TGGATAAATA
395145 AATTAT AATCTAT AATTAT AAATTAT AA-TAT --TTAT AATTA- AA-TA-
1 AATTAT AAT-TAT AATTAT -AATTAT AATTAT AATTAT AATTAT AATTAT
*
395189 AATTATT AAATTAT ATATTAT TATTAT AAT
1 AATTA-T -AATTAT A-ATTAT AATTAT AAT
395219 CAATTATATT
Statistics
Matches: 56, Mismatches: 2, Indels: 20
0.72 0.03 0.26
Matches are distributed among these distances:
4 7 0.12
5 7 0.12
6 19 0.34
7 18 0.32
8 5 0.09
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (6 bp):
AATTAT
Found at i:395171 original size:13 final size:13
Alignment explanation
Indices: 395142--395217 Score: 55
Period size: 13 Copynumber: 5.3 Consensus size: 13
395132 ATTTGGATAA
395142 ATAAATTATAATCT
1 ATAAATTATAAT-T
395156 AT-AATTATAAATT
1 ATAAATTAT-AATT
395169 ATAATATTTATAATT
1 ATAA-A-TTATAATT
395184 AAATAAATTATTAAATT
1 --ATAAATTA-T-AATT
* *
395201 ATATATTATTATT
1 ATAAATTATAATT
395214 ATAA
1 ATAA
395218 TCAATTATAT
Statistics
Matches: 51, Mismatches: 3, Indels: 17
0.72 0.04 0.24
Matches are distributed among these distances:
13 15 0.29
14 7 0.14
15 15 0.29
16 6 0.12
17 8 0.16
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (13 bp):
ATAAATTATAATT
Found at i:395207 original size:31 final size:32
Alignment explanation
Indices: 395158--395225 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 32
395148 TATAATCTAT
395158 AATTA-TAAATTATAATATTTATAATTA-AATA
1 AATTATTAAATTATAATA-TTATAATTATAATA
* *
395189 AATTATTAAATTAT-ATATTATTATTATAATC
1 AATTATTAAATTATAATATTATAATTATAATA
395220 AATTAT
1 AATTAT
395226 ATTCTTTGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 8 0.24
31 17 0.52
32 8 0.24
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (32 bp):
AATTATTAAATTATAATATTATAATTATAATA
Found at i:395208 original size:24 final size:23
Alignment explanation
Indices: 395139--395208 Score: 69
Period size: 24 Copynumber: 3.1 Consensus size: 23
395129 TAAATTTGGA
395139 TAAATAAATTAT-AATCTATA-AT
1 TAAATAAATTATAAAT-TATATAT
395161 T--ATAAATTATAATATT-TATAAT
1 TAAATAAATTATAA-ATTATAT-AT
395183 TAAATAAATTATTAAATTATATAT
1 TAAATAAATTA-TAAATTATATAT
395207 TA
1 TA
395209 TTATTATAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
20 11 0.28
21 2 0.05
22 6 0.15
24 15 0.38
25 6 0.15
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (23 bp):
TAAATAAATTATAAATTATATAT
Found at i:395556 original size:15 final size:15
Alignment explanation
Indices: 395536--395566 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
395526 CTATAATAAT
*
395536 TATATTATTCATATA
1 TATATTATTAATATA
395551 TATATTATTAATATA
1 TATATTATTAATATA
395566 T
1 T
395567 TATAATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (15 bp):
TATATTATTAATATA
Found at i:395619 original size:26 final size:26
Alignment explanation
Indices: 395586--395646 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
395576 TAATTATAAC
*
395586 TAAATAATTAAATTTATTATTTGTAG
1 TAAATAATTAAATTTATTATTTGTAA
395612 TAAATAATTAAATTTATTATTTGTAA
1 TAAATAATTAAATTTATTATTTGTAA
395638 TAAATAATT
1 TAAATAATT
395647 TTTGAAAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (26 bp):
TAAATAATTAAATTTATTATTTGTAA
Found at i:396260 original size:19 final size:18
Alignment explanation
Indices: 396215--396264 Score: 66
Period size: 17 Copynumber: 2.8 Consensus size: 18
396205 TTGAATTATT
* *
396215 AATAAATTTAAATTTTTC
1 AATAAATTTAAATATTTA
396233 AA-AAATTTAAATATTTA
1 AATAAATTTAAATATTTA
396250 AATAAATTTTAAATA
1 AATAAA-TTTAAATA
396265 ATTAGACTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 15 0.54
18 5 0.18
19 8 0.29
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
AATAAATTTAAATATTTA
Found at i:396382 original size:20 final size:22
Alignment explanation
Indices: 396346--396399 Score: 76
Period size: 21 Copynumber: 2.5 Consensus size: 22
396336 ATCAGTTTCA
396346 TTTATATAATAAAATA-TTTGT
1 TTTATATAATAAAATATTTTGT
*
396367 TTTATA-AATCAAATATTTTGT
1 TTTATATAATAAAATATTTTGT
396388 TTTAATATAATA
1 TTT-ATATAATA
396400 GTAAATTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 8 0.29
21 14 0.50
22 3 0.11
23 3 0.11
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.52
Consensus pattern (22 bp):
TTTATATAATAAAATATTTTGT
Found at i:396410 original size:16 final size:16
Alignment explanation
Indices: 396389--396421 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
396379 ATATTTTGTT
396389 TTAATA-TAATAGTAAA
1 TTAATATTAA-AGTAAA
396405 TTAATATTAAAGTAAA
1 TTAATATTAAAGTAAA
396421 T
1 T
396422 AATTAAGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (16 bp):
TTAATATTAAAGTAAA
Found at i:397036 original size:29 final size:29
Alignment explanation
Indices: 397004--397061 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
396994 AATAATATCC
397004 AAATAATATTTAAATTA-AATATTATTATT
1 AAATAAT-TTTAAATTATAATATTATTATT
* *
397033 AAATTATTTTAATTTATAATATTATTATT
1 AAATAATTTTAAATTATAATATTATTATT
397062 TTGAATCATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 8 0.31
29 18 0.69
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (29 bp):
AAATAATTTTAAATTATAATATTATTATT
Found at i:397145 original size:17 final size:17
Alignment explanation
Indices: 397093--397146 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
397083 TTATTTGATG
*
397093 TTTAAAAATTTATTATA
1 TTTAAATATTTATTATA
* * * *
397110 TTT-TATAATTATAAAA
1 TTTAAATATTTATTATA
397126 TTTAAATATTTATTATA
1 TTTAAATATTTATTATA
397143 TTTA
1 TTTA
397147 TGAATTAATG
Statistics
Matches: 27, Mismatches: 9, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
16 11 0.41
17 16 0.59
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTAAATATTTATTATA
Found at i:397368 original size:17 final size:17
Alignment explanation
Indices: 397346--397382 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
397336 ATGATATGGT
397346 TATATAATATAAAATAA
1 TATATAATATAAAATAA
* *
397363 TATATAATTTTAAATAA
1 TATATAATATAAAATAA
397380 TAT
1 TAT
397383 TATAGTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TATATAATATAAAATAA
Found at i:397671 original size:38 final size:38
Alignment explanation
Indices: 397629--397718 Score: 96
Period size: 38 Copynumber: 2.4 Consensus size: 38
397619 TTATAAGCGT
397629 TAATTTTTAACTATAAT-TTAATTATATAA-TTAAATAAA
1 TAATTTTTAA-TATAATATT-ATTATATAAGTTAAATAAA
* * *
397667 TAATTATTT-ATATAATATTATTATTTAAGTTATATATA
1 TAATT-TTTAATATAATATTATTATATAAGTTAAATAAA
*
397705 TTATTTTTAATATA
1 TAATTTTTAATATA
397719 TGTTATAAGA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
37 17 0.39
38 24 0.55
39 3 0.07
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (38 bp):
TAATTTTTAATATAATATTATTATATAAGTTAAATAAA
Found at i:397681 original size:12 final size:12
Alignment explanation
Indices: 397640--397707 Score: 52
Period size: 12 Copynumber: 5.7 Consensus size: 12
397630 AATTTTTAAC
397640 TATAATTTAATTA
1 TATAA-TTAATTA
*
397653 TATAATTAAATA
1 TATAATTAATTA
* *
397665 AATAATTATTTA
1 TATAATTAATTA
397677 TATAA-T-ATTA
1 TATAATTAATTA
*
397687 T-TATTTAAGTTA
1 TATAATTAA-TTA
397699 TATATATTA
1 TATA-ATTA
397708 TTTTTAATAT
Statistics
Matches: 42, Mismatches: 8, Indels: 9
0.71 0.14 0.15
Matches are distributed among these distances:
9 2 0.05
10 5 0.12
11 2 0.05
12 23 0.55
13 7 0.17
14 3 0.07
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (12 bp):
TATAATTAATTA
Found at i:397707 original size:21 final size:21
Alignment explanation
Indices: 397674--397714 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
397664 AAATAATTAT
397674 TTATATAATATTATTATTTAAG
1 TTATATAATATTATT-TTTAAG
397696 TTATAT-ATATTATTTTTAA
1 TTATATAATATTATTTTTAA
397715 TATATGTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 8 0.42
22 6 0.32
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
TTATATAATATTATTTTTAAG
Found at i:397718 original size:18 final size:21
Alignment explanation
Indices: 397675--397719 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
397665 AATAATTATT
397675 TATATAATATTATTATTTAAG
1 TATATAATATTATTATTTAAG
397696 T-TATATATATTATT-TTTAA-
1 TATATA-ATATTATTATTTAAG
397715 TATAT
1 TATAT
397720 GTTATAAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
19 1 0.05
20 12 0.55
21 9 0.41
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
TATATAATATTATTATTTAAG
Found at i:398211 original size:20 final size:20
Alignment explanation
Indices: 398162--398230 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
398152 ATTTTGATTG
*
398162 TTTATTTAATTATTAATAAG-
1 TTTA-TTAATTATAAATAAGA
*
398182 TTAATATAATTATAAATAAGA
1 TTTAT-TAATTATAAATAAGA
*
398203 TTTATTAATAATAAAATAA-A
1 TTTATTAATTAT-AAATAAGA
398223 -TTATTAAT
1 TTTATTAAT
398231 ATTATCATAA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
19 9 0.21
20 23 0.55
21 10 0.24
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (20 bp):
TTTATTAATTATAAATAAGA
Found at i:398402 original size:28 final size:30
Alignment explanation
Indices: 398327--398403 Score: 72
Period size: 28 Copynumber: 2.6 Consensus size: 30
398317 AATTATTCTA
*
398327 ATTAATAATTAATTCATAATACTATATAATT
1 ATTATTAATTAATT-ATAATACTATATAATT
* *
398358 AATATTAGACTAA-TATAA-A-TAT-TAATAT
1 ATTATTA-ATTAATTATAATACTATATAAT-T
398386 ATTATTAATTAATTATAA
1 ATTATTAATTAATTATAA
398404 CAATTATCGT
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
27 8 0.21
28 15 0.39
29 1 0.03
30 4 0.11
31 6 0.16
32 4 0.11
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (30 bp):
ATTATTAATTAATTATAATACTATATAATT
Found at i:401035 original size:15 final size:15
Alignment explanation
Indices: 401015--401108 Score: 54
Period size: 15 Copynumber: 6.3 Consensus size: 15
401005 AATATTAATT
*
401015 TTATTTGATTATTAA
1 TTATTTAATTATTAA
401030 TTATTTAATTATT-A
1 TTATTTAATTATTAA
*
401044 TTGATTTTAA-TAATAA
1 TT-A-TTTAATTATTAA
* *
401060 -CATTTAATTATTTA
1 TTATTTAATTATTAA
*
401074 TTGA-TTAATT-TTTA
1 TT-ATTTAATTATTAA
* *
401088 TTATTATGATTATTTA
1 TTATT-TAATTATTAA
401104 TTATT
1 TTATT
401109 AATAGTTAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 17
0.72 0.08 0.20
Matches are distributed among these distances:
13 6 0.10
14 15 0.24
15 26 0.41
16 16 0.25
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (15 bp):
TTATTTAATTATTAA
Found at i:401194 original size:12 final size:12
Alignment explanation
Indices: 401179--401204 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
401169 ATTGTCATTA
401179 AACTTAATAACC
1 AACTTAATAACC
401191 AACTTAATAACC
1 AACTTAATAACC
401203 AA
1 AA
401205 GAAAATTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (12 bp):
AACTTAATAACC
Found at i:402489 original size:22 final size:24
Alignment explanation
Indices: 402441--402495 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 24
402431 ATAATATTTT
*
402441 ATAAATATTTATAAATTATTAGTA
1 ATAAATATTTATAAATTATTAGCA
402465 ATAAATATTT-T-AATTAATTA-CA
1 ATAAATATTTATAAATT-ATTAGCA
*
402487 ATAACTATT
1 ATAAATATT
402496 ATATTGTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 13 0.46
23 5 0.18
24 10 0.36
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (24 bp):
ATAAATATTTATAAATTATTAGCA
Found at i:402911 original size:181 final size:180
Alignment explanation
Indices: 402670--403838 Score: 954
Period size: 179 Copynumber: 6.5 Consensus size: 180
402660 TGGTAAATAG
* * *
402670 ATTTATTTATTAAATC-T--CTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTT
1 ATTTATTTTTTAAATCTTCACTTATCAA-TTTTCATAATATTAATAAATTAGTATTATTTTATTT
* * * * ** *
402731 CAAACAAACTTATATGAACAAAAACATTTGTTTTACAACAAAACAAAAGGTCATAAAGATTTGAA
65 CAAATAAGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAA
* * * * * *
402796 ATAGATAATTATTCATATAGCCTTAACTATTTAAATTGGTTCGGTAAACAA
130 ATAGATAATTGTTCAAATAGCCTTAACTATTTGAACTGATTCGATAAACAA
* * * * *
402847 ATTTATTTTTTAAATCTATCAGTTATTAAATTTCATAATATTACTAGATTAGTATTATTTTATTT
1 ATTTATTTTTTAAATCT-TCACTTATCAATTTTCATAATATTAATAAATTAGTATTATTTTATTT
* * * *
402912 CAAATAAGCTTGTATGAAGATAAATAATTGTTTTATGACAAAACAAAAGGTCATAATGATTGGAA
65 CAAATAAGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAA
* * *
402977 ATATATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAACAA
130 ATAGATAATTGTTCAAATAGCCTTAACTATTTGAACTGATTCGATAAACAA
403028 ATTTATTTTTTAAATCTTCTACTTATCAATTTTTCA-AATATTAATAAATTAGTATTATTTTATT
1 ATTTATTTTTTAAATCTTC-ACTTATCAA-TTTTCATAATATTAATAAATTAGTATTATTTTATT
* * * ** *
403092 AT-GAATAGGCATGTATGATGAAAAACAATTGTTTTATGAC--AACAAAAGTTCATAATGATTTG
64 -TCAAATAAGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTG
* * * **
403154 AAATAGATAATTGTTTAAAT-GGCTATAATTATTTGAACTGATTCGATAAATTA
128 AAATAGATAATTGTTCAAATAGCCT-TAACTATTTGAACTGATTCGATAAACAA
* * * * *
403207 ATTTATGTTTTAAATCTCTAACTTATCAATTTTTATAATATTAATAAAGTAATATTATTTTATTT
1 ATTTATTTTTTAAATCT-TCACTTATCAATTTTCATAATATTAATAAATTAGTATTATTTTATTT
* * * ** * * * *
403272 TAGATAAGCTTTTATGAACTGAAACAATTGTTTTATGATAAAATATAAGGTCATAATGATTTTAA
65 CAAATAAGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAA
* ** * * *
403337 ATAGATAATTGTTCAAATAGTCAAAAATATTTGAACT--TTCCCGATAAATAG
130 ATAGATAATTGTTCAAATAGCCTTAACTATTTGAACTGATT--CGATAAACAA
* * * *
403388 ATTT-TTTCTTAATTTCTT-GCTTAAT-AATTTTC-TAAATGTTAATAAATTAGTATTATTTTAT
1 ATTTATTTTTTAA-ATCTTCACTT-ATCAATTTTCAT-AATATTAATAAATTAGTATTATTTTAT
* **** ** * * * *
403449 TTCAAATAAGCATGTATGAGTTGAAGTAATTATTTTATGACTAAACAAAAGGTCAAAACGATTTG
63 TTCAAATAAGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTG
* * * * *
403514 AAATAGATAATTATTCTAATAGTCTTAACTATTTGAACTGATTC-AGCAAACAC
128 AAATAGATAATTGTTCAAATAGCCTTAACTATTTGAACTGATTCGA-TAAACAA
* * * * * * *
403567 ATTTATTTTTTAAATCCTT-ACTTATTAATGTTT-AGAATATTATTAATTTAGAAATATTTTA-C
1 ATTTATTTTTTAAAT-CTTCACTTATCAAT-TTTCATAATATTAATAAATTAGTATTATTTTATT
** * * * ** *
403629 TCTAAATAAGCTTGT-TGAACATAAATTAAATG-TTTAGGACAAAACAAAA-ATCATAACAATTA
64 TC-AAATAAGCTTGTATGAACA-AAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTT
* * * * * * *
403691 GAGATGGATAATTGTTCAAATAGTC-AAACTATTTGAACT-AGTTCAATAAAGAG
127 GAAATAGATAATTGTTCAAATAGCCTTAACTATTTGAACTGA-TTCGATAAACAA
** * * * * *
403744 A-TTAAGTTTTAAATC-T--CTTATTAATTTTCAAAATATTAATAAAATAGTATTATTTTCTTTT
1 ATTTATTTTTTAAATCTTCACTTATCAATTTTCATAATATTAATAAATTAGTATTATTTTATTTC
* ** * *
403805 GAATAATTTTGTATGAATAGAAACAATTGGTTTT
66 AAATAAGCTTGTATGAACAAAAACAATT-GTTTT
403839 GGAACATTAA
Statistics
Matches: 800, Mismatches: 155, Indels: 76
0.78 0.15 0.07
Matches are distributed among these distances:
172 3 0.00
173 44 0.05
174 8 0.01
175 4 0.00
176 12 0.01
177 36 0.05
178 41 0.05
179 293 0.37
180 70 0.09
181 281 0.35
182 8 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (180 bp):
ATTTATTTTTTAAATCTTCACTTATCAATTTTCATAATATTAATAAATTAGTATTATTTTATTTC
AAATAAGCTTGTATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAA
TAGATAATTGTTCAAATAGCCTTAACTATTTGAACTGATTCGATAAACAA
Found at i:403303 original size:360 final size:355
Alignment explanation
Indices: 402609--403799 Score: 1114
Period size: 360 Copynumber: 3.3 Consensus size: 355
402599 TTAATTTAGC
* * * * * * * * *
402609 ATGATTTGAAATAAATAAATGTTTAAATTGTTATAACTAATTGAACTAGTAT-GGTAAATAGATT
1 ATGATTAGAAATAGATAATTGTTCAAATAGTCA-AACTATTTGAACTA-T-TCGATAAACAGATT
* ** *
402673 TATTTATTAAA--TCTCTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAAC
63 TATTTTTTAAATTTCTCTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTCAAAT
* * * ** * **
402736 AAACTTATATGAACAAAAACATTTGTTTTACAACAAAACAAAAGGTCATAAAGATTTGAAATAGA
128 AAGCATGTATGATGAAAAACAATTGTTTTATGAC-AAACAAAAGGTCATAAAGATTTGAAATAGA
* * * * * * *
402801 TAATTATTCATATAGCCTTAACTATTTAAATTGGTTCGGTAAACAAATTTATTTTTTAAATCTAT
192 TAATTATTTAAATAGCCTTAACTATTTGAACTGATTCGATAAA-AAATTTATTTTTTAAATCTCT
* * * * * * * *
402866 CAGTTATTAAATTTCATAATATTACTAGATTAGTATTATTTTATTTCAAATAAGCTTGTATGAAG
256 AACTTATTAATTTTTATAATATTAATAAATTAATATTATTTTATTTTAAATAAGCTTGTATGAA-
*
402931 ATAAATAATTGTTTTATGACAAAACAAAAGGTCATA
320 CTAAATAATTGTTTTATGACAAAACAAAAGGTCATA
* * *
402967 ATGATTGGAAATATATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCGATAAACAAATTT
1 ATGATTAGAAATAGATAATTGTTCAAATAGTCA-AACTATTTGAACT-ATTCGATAAACAGATTT
* *
403032 ATTTTTTAAATCTTCTACTTATCAATTTTTC-AAATATTAATAAATTAGTATTATTTTATTAT-G
64 ATTTTTTAAAT-TTCT-CTTATTAA-TTTTCAAAATATTAATAAATTAGTATTATTTTATT-TCA
* * *
403095 AATAGGCATGTATGATGAAAAACAATTGTTTTATGAC-AACAAAAGTTCATAATGATTTGAAATA
125 AATAAGCATGTATGATGAAAAACAATTGTTTTATGACAAACAAAAGGTCATAAAGATTTGAAATA
* * * * *
403159 GATAATTGTTTAAAT-GGCTATAATTATTTGAACTGATTCGATAAATTAATTTATGTTTTAAATC
190 GATAATTATTTAAATAGCCT-TAACTATTTGAACTGATTCGATAAA-AAATTTATTTTTTAAATC
* * * *
403223 TCTAACTTATCAATTTTTATAATATTAATAAAGTAATATTATTTTATTTTAGATAAGCTTTTATG
253 TCTAACTTATTAATTTTTATAATATTAATAAATTAATATTATTTTATTTTAAATAAGCTTGTATG
* * * *
403288 AACTGAAACAATTGTTTTATGATAAAATATAAGGTCATA
318 AACT-AAATAATTGTTTTATGACAAAACAAAAGGTCATA
** * *
403327 ATGATTTTAAATAGATAATTGTTCAAATAGTCAAAAATATTTGAACT-TTCCCGATAAATAGATT
1 ATGATTAGAAATAGATAATTGTTCAAATAGTC-AAACTATTTGAACTATT--CGATAAACAGATT
* * * *
403391 T-TTTCTT-AATTTCTTGCTTAATAATTTTCTAAATGTTAATAAATTAGTATTATTTTATTTCAA
63 TATTTTTTAAATTTC-T-CTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTCAA
** *
403454 ATAAGCATGTATGAGTTG--AAGTAATTATTTTATGACTAAACAAAAGGTCA-AAACGATTTGAA
126 ATAAGCATGTATGA--TGAAAAACAATTGTTTTATGAC-AAACAAAAGGTCATAAA-GATTTGAA
* * *
403516 ATAGATAATTATTCT-AATAGTCTTAACTATTTGAACTGATTCAGCA-AACACATTTATTTTTTA
187 ATAGATAATTATT-TAAATAGCCTTAACTATTTGAACTGATTC-G-ATAAAAAATTTATTTTTTA
* * * * * * * *
403579 AATC-CTTACTTATTAATGTTTAGAATATTATTAATTTAGA-AATATTTTACTCTAAATAAGCTT
249 AATCTCTAACTTATTAATTTTTATAATATTAATAAATTA-ATATTATTTTATTTTAAATAAGCTT
* * *
403642 GT-TGAACATAAATTAAATG-TTTAGGACAAAACAAAA-ATCATA
313 GTATGAAC-TAAA-TAATTGTTTTATGACAAAACAAAAGGTCATA
** * * * *
403684 ACAATTAGAGATGGATAATTGTTCAAATAGTCAAACTATTTGAACTAGTTCAATAAAGAGA-TTA
1 ATGATTAGAAATAGATAATTGTTCAAATAGTCAAACTATTTGAACTA-TTCGATAAACAGATTTA
** *
403748 AGTTTTAAA--TCTCTTATTAATTTTCAAAATATTAATAAAATAGTATTATTTT
65 TTTTTTAAATTTCTCTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTT
403800 CTTTTGAATA
Statistics
Matches: 685, Mismatches: 116, Indels: 69
0.79 0.13 0.08
Matches are distributed among these distances:
353 36 0.05
354 1 0.00
355 4 0.01
356 25 0.04
357 43 0.06
358 152 0.22
359 64 0.09
360 280 0.41
361 11 0.02
362 64 0.09
363 5 0.01
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (355 bp):
ATGATTAGAAATAGATAATTGTTCAAATAGTCAAACTATTTGAACTATTCGATAAACAGATTTAT
TTTTTAAATTTCTCTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTCAAATAAG
CATGTATGATGAAAAACAATTGTTTTATGACAAACAAAAGGTCATAAAGATTTGAAATAGATAAT
TATTTAAATAGCCTTAACTATTTGAACTGATTCGATAAAAAATTTATTTTTTAAATCTCTAACTT
ATTAATTTTTATAATATTAATAAATTAATATTATTTTATTTTAAATAAGCTTGTATGAACTAAAT
AATTGTTTTATGACAAAACAAAAGGTCATA
Found at i:404350 original size:179 final size:178
Alignment explanation
Indices: 403856--404451 Score: 582
Period size: 179 Copynumber: 3.3 Consensus size: 178
403846 TAATTTTTAA
* *
403856 ATAAATTTA-TTTTTAAAATTTTTACTTATTAATTTTTGGAACATTAATAAATTTATATTATTTT
1 ATAAATTTATTTTTTAAAATTTTTACTTATTAATTTTTGGAATATTAATAAATTAATATTATTTT
* * * * * *
403920 -ATTTGAAATAAGCTTGAATGAATAGAACCAATTGTTTTATAACAAAACAAAATA-TTGTAATGT
66 AATTCG-AATAAGCTAGAATGAATAGAAACAATTGTTTTATAACAAAACAAAAAAGTTATAATGA
403983 TTTGAAATAGATAATTATT-AAGATAGTCATAACTATTTGAACTTGTTCG
130 TTTGAAATAGATAATTATTCAA-ATAGTCATAACTATTTGAACTTGTTCG
* * *
404032 ATAAATAGATTTATTTTTT-TAATTCTCTTACTTTTTAATTTTTGGAATATTAATAAATTAGTAT
1 AT--A-A-ATTTATTTTTTAAAATT-T-TTACTTATTAATTTTTGGAATATTAATAAATTAATAT
* * * * *
404096 TATTTTATTTCAAATAAGCTA-ACATGAATTGAAACAATTGTTTTTATTACAAAAC-AAAATGTT
60 TATTTTAATTCGAATAAGCTAGA-ATGAATAGAAACAATTG-TTTTATAACAAAACAAAAAAGTT
* * * * *
404159 ACAATGATTTGAAGTAGATAATTGTTCAAATAGTCATGACTATTTGAACTTGTTTG
123 ATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCG
* * * * *
404215 GTAAACTTATTTTTTAAAATATTTTACTTATTAATTGTTGAAATATTAATAAATCAATATTATTT
1 ATAAATTTATTTTTTAAAAT-TTTTACTTATTAATTTTTGGAATATTAATAAATTAATATTATTT
* * * * ** * * **
404280 TAATCCGAATAAGCTCGTATGGACGGAAACAATTGTTTTATGACAAAACAAAAAAGTCATAAAAA
65 TAATTCGAATAAGCTAGAATGAATAGAAACAATTGTTTTATAACAAAACAAAAAAGTTATAATGA
* * * * *
404345 TTTGAAATAAATAATTATTCAGATAGTCATAACGATTTGAATTTATTCG
130 TTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCG
*
404394 ATAAATAGATTTATTTTTT-AAATCTTTTACTTATTAGTTATCTT--AATATTAATAAATT
1 AT--A-A-ATTTATTTTTTAAAAT-TTTTACTTATTAATT-T-TTGGAATATTAATAAATT
404452 TGTGTTATTG
Statistics
Matches: 340, Mismatches: 58, Indels: 38
0.78 0.13 0.09
Matches are distributed among these distances:
176 2 0.01
178 14 0.04
179 125 0.37
180 14 0.04
181 10 0.03
182 97 0.29
183 74 0.22
184 4 0.01
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (178 bp):
ATAAATTTATTTTTTAAAATTTTTACTTATTAATTTTTGGAATATTAATAAATTAATATTATTTT
AATTCGAATAAGCTAGAATGAATAGAAACAATTGTTTTATAACAAAACAAAAAAGTTATAATGAT
TTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCG
Found at i:404650 original size:17 final size:17
Alignment explanation
Indices: 404628--404662 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
404618 TAAGTTAAAA
*
404628 AATTATTCGAATATTAT
1 AATTATTAGAATATTAT
*
404645 AATTATTATAATATTAT
1 AATTATTAGAATATTAT
404662 A
1 A
404663 GTATATTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (17 bp):
AATTATTAGAATATTAT
Found at i:404776 original size:19 final size:19
Alignment explanation
Indices: 404744--404780 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
404734 AAAATTAAAC
*
404744 AATATAATATTTTTATTAT
1 AATATAATAATTTTATTAT
*
404763 AATATTATAATTTTATTA
1 AATATAATAATTTTATTA
404781 CGATACTTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
AATATAATAATTTTATTAT
Found at i:407096 original size:120 final size:120
Alignment explanation
Indices: 406883--407119 Score: 334
Period size: 120 Copynumber: 2.0 Consensus size: 120
406873 TTAAAAAATG
* ** **
406883 AATCTATTTACTGAATAAGTTCAAATCGTTATGGTTATTTGAACAATTATCTATTTCAAATTGCT
1 AATCTATTTACTGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCACT
406948 ATGACCTTATATTTTGTCATAAAACAATT-TTTTCTATTCATACAAA-CTTATTTCA
66 ATGACCTTATATTTTGTCATAAAACAATTATTTT-TATTCATA-AAAGCTTATTTCA
* * * *
407003 AATCTATTTACTGAATAAGTTCAAATAGTTATGACTGTTTGAATAATTATTTATTTCAAATCATT
1 AATCTATTTACTGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCACT
* * *
407068 ATGACCTTTTGTTTTGTCATAAAACAATTATTTTTGTTCATAAAAGCTTATT
66 ATGACCTTATATTTTGTCATAAAACAATTATTTTTATTCATAAAAGCTTATT
407120 CAGATTAAAA
Statistics
Matches: 103, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
119 3 0.03
120 96 0.93
121 4 0.04
ACGTcount: A:0.34, C:0.12, G:0.08, T:0.45
Consensus pattern (120 bp):
AATCTATTTACTGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCACT
ATGACCTTATATTTTGTCATAAAACAATTATTTTTATTCATAAAAGCTTATTTCA
Found at i:407403 original size:180 final size:181
Alignment explanation
Indices: 407009--407546 Score: 518
Period size: 180 Copynumber: 3.0 Consensus size: 181
406999 TTCAAATCTA
* * *
407009 TTTACTGAATAAGTTCAAATAGTTATGACTGTTTGAATAATTATTTATTTCAAATCATTATGACC
1 TTTACCGAATAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACC
* * *** * * *
407074 TTTTGTTTTGTCATAAAACAATTATTTTTGTTCATAAAAGCTTATTCAGATTAAAATAATATTAA
66 TTTTGTTTCGTCATAAAACAATTATATCAATTCATAAAAGCTTATTCAGAATAAAACAATACTAA
* * *
407139 TTTATTAATATTTCAATAATTAATAAGTAAAAGATTTAAAAAATAAATATG
131 CTTATCAATATTTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATG
* * * * * * ** * *
407190 TTTATCAAATAAATTCAAATAGTAATAACTATTTAAATAATTATCTATTTCAAATTGTTTTGATC
1 TTTACCGAATAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACC
* * * * *
407255 TTTTGTTTCGTCATAAAA-AATTGTATCAATTTATATAGGCTTATT-TGAAATAAAACAATACTA
66 TTTTGTTTCGTCATAAAACAATTATATCAATTCATAAAAGCTTATTCAG-AATAAAACAATACTA
* * * *
407318 ACTTATCAATA-TTCAAAAAATTAATGAGTAAGAGATTTAAAAAATGAATTTG
130 ACTTATCAATATTTC-AAAAATTAATAAGTAAAAGATTTAAAAAATAAATATG
* * *
407370 TTTACCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTAAGACC
1 TTTACCGAATAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACC
* * * * * * * *
407435 TTTTATTTTGTCATAAAATAATTGT-TTACGTTCATAGAAGCTTATTTCA-AATAAAATAATA-T
66 TTTTGTTTCGTCATAAAACAATTATATCA-ATTCATAAAAGCTTA-TTCAGAATAAAACAATACT
* ** *
407497 AAATT-TACTAATA-TTCTAAGGATTAATAAGTAAAA-ATTTTAAAAATAAAT
129 AACTTAT-C-AATATTTC-AAAAATTAATAAGTAAAAGATTTAAAAAATAAAT
407547 CTATATTAGT
Statistics
Matches: 286, Mismatches: 63, Indels: 17
0.78 0.17 0.05
Matches are distributed among these distances:
179 5 0.02
180 161 0.56
181 118 0.41
182 2 0.01
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.41
Consensus pattern (181 bp):
TTTACCGAATAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACC
TTTTGTTTCGTCATAAAACAATTATATCAATTCATAAAAGCTTATTCAGAATAAAACAATACTAA
CTTATCAATATTTCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATG
Found at i:408559 original size:32 final size:33
Alignment explanation
Indices: 408518--408592 Score: 82
Period size: 33 Copynumber: 2.2 Consensus size: 33
408508 TAACAAGTTT
*
408518 AATAGTATTTATA-TA-TTATATTATAATAATTTA
1 AATA-TATTTATACTAGTTATATT-TAATAATATA
* *
408551 AATATATTTTTACTAGTTATATTTAATACTATA
1 AATATATTTATACTAGTTATATTTAATAATATA
408584 ATATATATT
1 A-ATATATT
408593 AATTTTAAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
32 7 0.19
33 15 0.42
34 14 0.39
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.52
Consensus pattern (33 bp):
AATATATTTATACTAGTTATATTTAATAATATA
Found at i:408996 original size:67 final size:67
Alignment explanation
Indices: 408919--409056 Score: 177
Period size: 67 Copynumber: 2.1 Consensus size: 67
408909 AATTAGTATT
* * *
408919 ATTTTATTTCAGATAAACTTATACATTAAAAAATAATTGCTTTATGACAAAATAAAAAGTACTAA
1 ATTTTATTTCAAATAAACTTATACATTAAAAAACAATTGCTTTATGACAAAATAAAAAGTAATAA
408984 CA
66 CA
* * ** * * * *
408986 ATTTTATTTCAAATAAGCTTGTATGTTGAAAAACAATTGTTTTATGACAAAATGAAAGGTAATAA
1 ATTTTATTTCAAATAAACTTATACATTAAAAAACAATTGCTTTATGACAAAATAAAAAGTAATAA
409051 CA
66 CA
409053 ATTT
1 ATTT
409057 GAAATAGATA
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
67 60 1.00
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (67 bp):
ATTTTATTTCAAATAAACTTATACATTAAAAAACAATTGCTTTATGACAAAATAAAAAGTAATAA
CA
Found at i:409663 original size:181 final size:179
Alignment explanation
Indices: 409129--410528 Score: 754
Period size: 181 Copynumber: 7.8 Consensus size: 179
409119 TTTAAATCTC
* * * * * **
409129 TTAATTTTCAAAATATTAAGAAAAGT-AGTATTATTTTTATTTTGGATAAACTTTTTGTGAACTA
1 TTAATTTTCAAAATATTAA-TAAA-TCAGTATTATTTTTA-TTTGAATAAGC-TTATATGAAAAA
* * * * *
409193 AAACAATTGTTTTATTACAAAAACAAAAATTCACAACAATTTTAAATAGATAATTATTTAAATAG
62 AAACAATTGTTTTATGAC-AAAACAAAGA-TCACAACGATTTGAAATAGATAATTATTCAAATAG
* * *
409258 TCATAACTATTTGAACT-TGTTCAATAAACAAATTTAGTTTTTCAAATATCTTGCTTA
125 TCATAACTATTTGAACTGT-TTGAA-AAACAACTTTAGTTTTT-AAATCTCTTGCTTA
* * * * **
409315 TTAATCTTTCAAAA-GTTAATAAATTAGTATTATTTTCT-TTCGAATAAGCTTGTATGAACTAAA
1 TTAAT-TTTCAAAATATTAATAAATCAGTATTATTTT-TATTTGAATAAGCTTATATGAAAAAAA
* ** * * * * * * * *
409378 ACAATTATTTTATGATTAAACAAAAGGTTAGAATGATTTGAAATAGATAATTATTCTAACAATCT
64 ACAATTGTTTTATGACAAAAC-AAAGATCACAACGATTTGAAATAGATAATTATTCAAATAGTCA
* * * * *
409443 TAATTATTTGAACTGATT-AGCAAAC-ACATTTATTTTTTAAATCTCTTACTTA
128 TAACTATTTGAACTGTTTGA-AAAACAAC-TTTAGTTTTTAAATCTCTTGCTTA
* *
409495 TTACTTTTCAAAATATTATTAAATCAGTATTATTTTTATTTGAATCAA-CTTATATGATAAAAAA
1 TTAATTTTCAAAATATTAATAAATCAGTATTATTTTTATTTGAAT-AAGCTTATATGA-AAAAAA
* * *
409559 ACAATTGTTTTATGACAAAACAAAGATCATAACGATTTGAGATTA-ATATTTATTCAAATAGTCA
64 ACAATTGTTTTATGACAAAACAAAGATCACAACGATTTGA-AATAGATAATTATTCAAATAGTCA
*
409623 TAACTATTAGAACTGCTTTGAAAAACAACTTTAGTTTTTAAATCTCTTGCTTA
128 TAACTATTTGAACTG-TTTGAAAAACAACTTTAGTTTTTAAATCTCTTGCTTA
* ** * * * * * ***
409676 ATAATTTTTGAAATATTAATAAAGCAGTACTA-TTTTATTTTGAGATAAGTTTTTATTAACTGAA
1 TTAATTTTCAAAATATTAATAAATCAGTATTATTTTTA-TTTGA-ATAAGCTTATATGAAAAAAA
* * ** * * * **
409740 ACAATTGTTTTATGATAAAACAAA-ATGTCAAAATAATTTTAAACAAATAATTATTTTAATAGTC
64 ACAATTGTTTTATGACAAAACAAAGA--TCACAACGATTTGAAATAGATAATTATTCAAATAGTC
* * * * * * *
409804 ATATCTATTTAAAATTGTTCAGTAAATA-GA-TTTATTTTTTTAAATCTCTTGC-T-
127 ATAACTATTT-GAACTGTT-TG-AAAAACAACTTTA-GTTTTTAAATCTCTTGCTTA
*** * * ** * ***
409857 TTAATTTTTTTAATGTTAATAAATTAGTA-TA-TTTTATTCCAAATAAGCTTGTATGAACTGAAA
1 TTAATTTTCAAAATATTAATAAATCAGTATTATTTTTATT-TGAATAAGCTTATATGAAAAAAAA
* * * * ** *
409920 TAATTGTTTTATGACTAAACAAAATGAT-AGAATGATTTGAAATAGATAATTATTCTGATAGTCT
65 CAATTGTTTTATGACAAAAC-AAA-GATCACAACGATTTGAAATAGATAATTATTCAAATAGTCA
* **
409984 TAACTATTTGAACTAG-TTCAGCTAACATA-TTTA-TTTTCTAAA--TC-T-CTTA
128 TAACTATTTGAACT-GTTTGA-AAAACA-ACTTTAGTTTT-TAAATCTCTTGCTTA
** * * * * * *** * **
410033 TTAATTTTTGAAATATTATTAAATTAGTATCATATTAATCCAAATAAGCTTGTATGAAAGGAAAC
1 TTAATTTTCAAAATATTAATAAATCAGTATTATTTTTATTTGAATAAGCTTATATGAAAAAAAAC
* * * ** * * * * *
410098 AATTGTTGTATGACAAAATAAAAATCATTATGATTTGAGATAGATAATTGTTCAAACAGTTATAA
66 AATTGTTTTATGACAAAACAAAGATCACAACGATTTGAAATAGATAATTATTCAAATAGTCATAA
* * * *
410163 CTATTTGAATTAGTTTAGTAAATA-GA-TTTAGGTTTTAAA--TC-T-CTTA
131 CTATTTGAACT-GTTT-G-AAAAACAACTTTAGTTTTTAAATCTCTTGCTTA
** * * *
410209 TTAATTTTCAAAATATTAATAAATCAAAATTA-TTTTATTTTGAAT-A-TTTATGTATGAACAGA
1 TTAATTTTCAAAATATTAATAAATCAGTATTATTTTTA-TTTGAATAAGCTTA--TATGAAAAAA
* * * * * * * *
410271 AACAATTGTTTTATGATAAAACAAAAGGTCATAACAATTTGAAATAGCTAATTGTTCTAATAGAC
63 AACAATTGTTTTATGACAAAAC-AAAGATCACAACGATTTGAAATAGATAATTATTCAAATAGTC
* * * *
410336 ATAACTATTTGAACT-TATTCGATAAACAGA-TTTATTTTTTAAATCTCCTACTTA
127 ATAACTATTTGAACTGT-TT-GAAAAACA-ACTTTAGTTTTTAAATCTCTTGCTTA
** * * *
410390 TTAATTTGT-AAAATATTAATAAAGT-AGTATTA-TTTTATTTTGAATAAATTTGTATGAATAGA
1 TTAATTT-TCAAAATATTAATAAA-TCAGTATTATTTTTA-TTTGAATAAGCTTATATGAAAAAA
* * * * * * * *
410452 AACAATTGTTTTATGATAAAACAAAAGATCATAACTATTAT-AAATAAAAAATTGTTTAAACAGT
63 AACAATTGTTTTATGACAAAAC-AAAGATCACAACGATT-TGAAATAGATAATTATTCAAATAGT
*
410516 TATAACTATTTGA
126 CATAACTATTTGA
410529 GCTTAATAAT
Statistics
Matches: 954, Mismatches: 201, Indels: 123
0.75 0.16 0.10
Matches are distributed among these distances:
174 3 0.00
175 12 0.01
176 148 0.16
177 106 0.11
178 13 0.01
179 91 0.10
180 111 0.12
181 269 0.28
182 103 0.11
183 53 0.06
184 13 0.01
185 14 0.01
186 10 0.01
187 8 0.01
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (179 bp):
TTAATTTTCAAAATATTAATAAATCAGTATTATTTTTATTTGAATAAGCTTATATGAAAAAAAAC
AATTGTTTTATGACAAAACAAAGATCACAACGATTTGAAATAGATAATTATTCAAATAGTCATAA
CTATTTGAACTGTTTGAAAAACAACTTTAGTTTTTAAATCTCTTGCTTA
Found at i:412170 original size:181 final size:182
Alignment explanation
Indices: 411233--413203 Score: 1456
Period size: 181 Copynumber: 11.0 Consensus size: 182
411223 TTTTAATCTG
* * * ** *
411233 AATAAGCATGTATGGAA-ATAAACAATTATTTTATGA-AAAA-ATAAATATCATAATGATTT-AA
1 AATAAGCTTGTAT-GAATAGAAACAATTGTTTTATGATAAAACA-AAAGGTCATAACGATTTGAA
**
411294 GATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAT-TTTTGT-AA-ATAGATTTAGTTTT
64 -ATAGATAATTGTTCAAATAGTCATAACTATTTGAACT-TGTTCAGTAAACATA-ATTTA-TTTT
* * * * *
411356 T-AAATC--TT--TTATTAATTTTCAAAATATTAATAGATCAATATTATTTTATTT-T
125 TAAAATCTTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCA
*** * * *
411408 GCCAA--TT-T-TGCAT-G-AACAGATTGTTTTATGACT-AAACAAAAGATCATAACGATTTAAA
1 AATAAGCTTGTATGAATAGAAACA-ATTGTTTTATGA-TAAAACAAAAGGTCATAACGATTTGAA
* * * *
411466 ATAGATAATTGTTCAAAT-GACATGATTATTTGAACTTGTTC-GATAAACAT-ATTTATTTTTTA
64 ATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAG-TAAACATAATTTATTTTTAA
*** * * *
411528 AATCTCCAACCTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTCCA
128 AATCTTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCA
* * * * *
411583 AATAAACTTGTATGAATTGAAAAAATTGTTTTATGATAAAACAAAAGATCATAACTATTTGAAAT
1 AATAAGCTTGTATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAACGATTTGAAAT
* * * *
411648 AAATAATTGTTCAAACATTCATAACTATTTGAACTTG--CATGTTAAACA-AATTTATTTTTTTA
66 AGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCA-G-TAAACATAATTTA-TTTTTAA
* * ** ** *
411710 ACTCTTTTACTTATCAATTTTTGGAATATTAATAAGCTAGTACTATTTTATTTCA
128 AATCTTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCA
* * * * * * * *
411765 AATATGCTTGTATGAATAGAAACATTTGGTTTATAATGAAACAAAAGGTCATAACTATTCGAAAA
1 AATAAGCTTGTATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAACGATTTGAAAT
* * * *
411830 AGATAATTGTTAAAATAGTCATAACTTTTTGAACATGTTCA--AAAAATAAATTTATTTTT-AAA
66 AGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACAT-AATTTATTTTTAAAA
* *
411892 TTTTTTACTTATTAATTTTTGAAATATTAATAAATTTA-TATTATTTTA-TTCAA
130 TCTTTTACTTATTAATTTTTAAAATATTAATAAA-TTAGTATTATTTTATTTC-A
* * *** *
411945 AATAAACTTGTATGAATAGGAATGGTTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAAT
1 AATAAGCTTGTATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAACGATTTGAAAT
* * *
412010 AGATAATTATTCAAATAGTCATAACTATTTAAACTTGTTCAG-AAA-ATAGTTTCATTTTTAAAA
66 AGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATAATTT-ATTTTTAAAA
* * * ** **
412073 TCTCTTACTCATTATTTTTTGGAATATTAATAAATTAGTATTATTTTATTTTG
130 TCTTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCA
* * * * * * * * * *
412126 AATTAGCCTATATGAATTGATACAATTGTTTTAGGATGAAACAAAAGGTCAAAATGATTTTAAAT
1 AATAAGCTTGTATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAACGATTTGAAAT
** * * * ** * *
412191 AGATAATTACTCAAATAGTTATGACTATTTGGACTTGTTTGGTAAATAT-ATTTATTTTAAAAAT
66 AGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATAATTTATTTTTAAAAT
* * * * * *
412255 CTTTTACTTATTAATTGTCAAAATATTAAAAAATTAATATTATTTTAATCCA
131 CTTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCA
* * * * * * *
412307 AATAAGCTTGCACGGAGAAAAACAATTGTTTTATGATAAAACAAAATGTCATAA-TAGTTTGAAA
1 AATAAGCTTGTATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAACGA-TTTGAAA
* * * * * * * * **
412371 TAAAAAATTGTTCAAACAGTTATGACTTTTTTAACTTATTTGGTAAACA-AATTTA-TTTTATAA
65 TAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATAATTTATTTTTA-AA
* * * * *
412434 ATCTTTTACTTATTAAATGTCT-AAATATTAATAAATTTGTATAATTTTATTTGA
129 ATCTTTTACTTATT-AATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCA
* * * * *
412488 AATAGGCTTGTATGAGTAGAAAAAATTGTTTTATGATAAAATAAAAGGTCATAATGATTTGAAAT
1 AATAAGCTTGTATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAACGATTTGAAAT
* ** * * *
412553 AGATAATTGTTCAAATAATCATAACTATTTGAGTTTGTTC-G-AAAAATAGTTTCATTTTTTAAA
66 AGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATAATTT-ATTTTTAAAA
* * * *
412616 TCTCTTACTCATT--GTTTTAAGAATATTAATAAATTAG-ATTTATGTTATTTCA
130 TCTTTTACTTATTAATTTTTAA-AATATTAATAAATTAGTA-TTATTTTATTTCA
* ** * * * *
412668 AATAAGCTTTTACAAACAG-AACAATTTTTTTGTGATAAAACAAAAGGTCATAACTATTTGAAAT
1 AATAAGCTTGTATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAACGATTTGAAAT
* * * * *** * * *
412732 AGATAATTGTTCAAACAATCATAACTATTTGCACTAG-TCAGGCCA-ATAGATTCATTTTTTAAG
66 AGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATA-ATTTATTTTTAAAA
* * * * * * * *
412795 TCTGTTACTTATGAATTTTCAAAATATTAATACATTAGCATTACTTTATTCCG
130 TCTTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCA
* * * * * * *
412848 AATAAGAC---TATGAACAAAAACAATTATTTTATGACAAAGCAAATGGTCATAATGATTTGAAA
1 AATAAG-CTTGTATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAACGATTTGAAA
* * * * * ** * * * *
412910 TAAAGAATTGTTTAAATAATTATAACTAACTGAACTGGTTTAGTAAAC--AGTTTATTTTTTAAA
65 TAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATAATTTATTTTTAAAA
* * * * * * * *
412973 TCTCTTACTTCTTAATTTTCAAAATATGAATAGATTAATACTATTTTATTCCA
130 TCTTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCA
* * * * * * * * *
413026 AACAAACTTATATGAACAAAAACATTTGTTTTATGAAAAAAGAAAAAGTCATAACGATTTGAAAT
1 AATAAGCTTGTATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAACGATTTGAAAT
* * * * * * *
413091 AGATAATTGTTCAAATAATCATAATTATTTGAACTAGTT-TGACAAACA-AAATTATTTTTTAAA
66 AGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAG-TAAACATAATTTATTTTTAAAA
*** * * *
413154 TCCCATACTTATTAATTTTTTAAATATTAATAAATTTGTTTTATTTTATT
130 TCTTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATT
413204 CTGAATAAGT
Statistics
Matches: 1418, Mismatches: 311, Indels: 128
0.76 0.17 0.07
Matches are distributed among these distances:
169 11 0.01
170 41 0.03
171 39 0.03
172 6 0.00
173 1 0.00
174 38 0.03
175 4 0.00
177 3 0.00
178 69 0.05
179 181 0.13
180 364 0.26
181 501 0.35
182 156 0.11
183 2 0.00
184 2 0.00
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.41
Consensus pattern (182 bp):
AATAAGCTTGTATGAATAGAAACAATTGTTTTATGATAAAACAAAAGGTCATAACGATTTGAAAT
AGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGTAAACATAATTTATTTTTAAAAT
CTTTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTCA
Found at i:413512 original size:26 final size:25
Alignment explanation
Indices: 413479--413533 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
413469 CAATGACCAA
*
413479 TATTTATTAAATT-ATTTTAATTTTGT
1 TATTTATTAAATTGA-TAT-ATTTTGT
*
413505 TATTTATTTAATTGATATATTTTGT
1 TATTTATTAAATTGATATATTTTGT
413530 TATT
1 TATT
413534 AATAATTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 11 0.42
26 14 0.54
27 1 0.04
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.65
Consensus pattern (25 bp):
TATTTATTAAATTGATATATTTTGT
Found at i:413545 original size:23 final size:25
Alignment explanation
Indices: 413498--413545 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
413488 AATTATTTTA
* *
413498 ATTTTGTTATTTATTTAATTGATAT
1 ATTTTGTTATTTATATAATTAATAT
413523 ATTTTGTTA-TTA-ATAATTAATAT
1 ATTTTGTTATTTATATAATTAATAT
413546 TCAAGTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 9 0.43
24 3 0.14
25 9 0.43
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.60
Consensus pattern (25 bp):
ATTTTGTTATTTATATAATTAATAT
Found at i:422268 original size:12 final size:12
Alignment explanation
Indices: 422234--422268 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
422224 AATAATATTA
*
422234 TTAATTAGTAGT
1 TTAATTAATAGT
422246 TTAATTAAATAGT
1 TTAATT-AATAGT
422259 TTAATTAATA
1 TTAATTAATA
422269 TTCTAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (12 bp):
TTAATTAATAGT
Found at i:422349 original size:22 final size:22
Alignment explanation
Indices: 422309--422350 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
422299 TATTATTAAG
* *
422309 ATAATAATAAATGTTATAATTA
1 ATAATAATAAATATAATAATTA
*
422331 ATAATAATCAATATAATAAT
1 ATAATAATAAATATAATAAT
422351 AGTTTATCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.38
Consensus pattern (22 bp):
ATAATAATAAATATAATAATTA
Found at i:422652 original size:9 final size:8
Alignment explanation
Indices: 422622--422670 Score: 57
Period size: 8 Copynumber: 6.2 Consensus size: 8
422612 GATTTAATAT
422622 TATT-TTA
1 TATTATTA
*
422629 TAATATTA
1 TATTATTA
422637 TATTATTA
1 TATTATTA
422645 TGATTATTA
1 T-ATTATTA
*
422654 TATT-TAA
1 TATTATTA
422661 TATTATTA
1 TATTATTA
422669 TA
1 TA
422671 AAATTTAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
7 9 0.26
8 18 0.51
9 8 0.23
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (8 bp):
TATTATTA
Found at i:423160 original size:19 final size:19
Alignment explanation
Indices: 423122--423170 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
423112 TAAAATAATA
423122 AATAACTAATAAAAGTTATT
1 AATAA-TAATAAAAGTTATT
* *
423142 TATTATAATAAAA-TATATT
1 AATAATAATAAAAGT-TATT
423161 AATAATAATA
1 AATAATAATA
423171 GTTATTAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 20 0.83
20 3 0.12
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (19 bp):
AATAATAATAAAAGTTATT
Found at i:423233 original size:19 final size:19
Alignment explanation
Indices: 423192--423236 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
423182 TTATATTTTA
** *
423192 AATTATAATTATAATGATT
1 AATTATAATTATAACAATC
423211 AATTATAATTATAACAATC
1 AATTATAATTATAACAATC
423230 AATTATA
1 AATTATA
423237 TTAATAATTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.42
Consensus pattern (19 bp):
AATTATAATTATAACAATC
Found at i:423690 original size:24 final size:25
Alignment explanation
Indices: 423672--423719 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
423662 ATAATTATTA
423672 TAATATAATATATAT-TAATTAAAT
1 TAATATAATATATATATAATTAAAT
*
423696 TAATATAATTTATATATAA-TAAAT
1 TAATATAATATATATATAATTAAAT
423720 ATATAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 19 0.86
25 3 0.14
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
TAATATAATATATATATAATTAAAT
Found at i:423792 original size:9 final size:8
Alignment explanation
Indices: 423766--423819 Score: 65
Period size: 8 Copynumber: 6.6 Consensus size: 8
423756 ATTAACAATG
423766 TTATATTA
1 TTATATTA
423774 TTAT-TTA
1 TTATATTA
423781 TTATATTGA
1 TTATATT-A
*
423790 TTATATAA
1 TTATATTA
423798 TTATATCTA
1 TTATAT-TA
423807 TTATATTA
1 TTATATTA
*
423815 ATATA
1 TTATA
423820 AATATAACAC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
7 7 0.17
8 19 0.47
9 14 0.35
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (8 bp):
TTATATTA
Found at i:423802 original size:17 final size:16
Alignment explanation
Indices: 423766--423812 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
423756 ATTAACAATG
*
423766 TTATATTATTAT-TTA
1 TTATATTATTATATAA
423781 TTATATTGATTATATAA
1 TTATATT-ATTATATAA
423798 TTATATCTATTATAT
1 TTATAT-TATTATAT
423813 TAATATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 7 0.25
16 5 0.18
17 15 0.54
18 1 0.04
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (16 bp):
TTATATTATTATATAA
Found at i:423819 original size:17 final size:16
Alignment explanation
Indices: 423767--423819 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 16
423757 TTAACAATGT
*
423767 TATATTATTAT-TTAT
1 TATATTATTATATTAA
423782 TATATTGATTATA-TAA
1 TATATT-ATTATATTAA
423798 TTATATCTATTATATTAA
1 -TATAT-TATTATATTAA
423816 TATA
1 TATA
423820 AATATAACAC
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
15 6 0.19
16 7 0.22
17 15 0.47
18 4 0.12
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (16 bp):
TATATTATTATATTAA
Found at i:423861 original size:18 final size:19
Alignment explanation
Indices: 423830--423869 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
423820 AATATAACAC
*
423830 TATTATATTATATTAATAA
1 TATTATAATATATTAATAA
*
423849 TATTATAAT-TATTTATAA
1 TATTATAATATATTAATAA
423867 TAT
1 TAT
423870 ATCTATAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTATAATATATTAATAA
Found at i:423957 original size:18 final size:17
Alignment explanation
Indices: 423916--423958 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
423906 TAATAAATTC
*
423916 TTATAAATTAATTTAAA
1 TTATTAATTAATTTAAA
* *
423933 TTTTTAATTAATATTGAA
1 TTATTAATTAAT-TTAAA
423951 TTATTAAT
1 TTATTAAT
423959 ATTATAATCA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (17 bp):
TTATTAATTAATTTAAA
Found at i:424537 original size:15 final size:16
Alignment explanation
Indices: 424506--424553 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 16
424496 TGTATTCAAA
424506 TAATATATTAATAATT
1 TAATATATTAATAATT
*
424522 TAATAT-TTAATTATT
1 TAATATATTAATAATT
424537 T-ATCATAATTAATAATT
1 TAAT-AT-ATTAATAATT
424554 ATTTATATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 2 0.07
15 11 0.41
16 6 0.22
17 8 0.30
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TAATATATTAATAATT
Found at i:425595 original size:14 final size:14
Alignment explanation
Indices: 425578--425637 Score: 52
Period size: 14 Copynumber: 4.2 Consensus size: 14
425568 TTATATAGGT
425578 AATATAATTAATTA
1 AATATAATTAATTA
*
425592 AATATTAA-TGATTA
1 AATA-TAATTAATTA
*
425606 GAATATTATTAATATA
1 -AATATAATTAAT-TA
*
425622 AA-ATAATTAATAA
1 AATATAATTAATTA
425635 AAT
1 AAT
425638 TTTAGTATTA
Statistics
Matches: 36, Mismatches: 5, Indels: 10
0.71 0.10 0.20
Matches are distributed among these distances:
13 3 0.08
14 19 0.53
15 12 0.33
16 2 0.06
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (14 bp):
AATATAATTAATTA
Found at i:426488 original size:14 final size:14
Alignment explanation
Indices: 426469--426502 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
426459 TTATTTAAAG
426469 TATTAATTGTTAAT
1 TATTAATTGTTAAT
* *
426483 TATTAATTTTTATT
1 TATTAATTGTTAAT
426497 TATTAA
1 TATTAA
426503 ATAAATTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (14 bp):
TATTAATTGTTAAT
Found at i:426531 original size:13 final size:13
Alignment explanation
Indices: 426505--426554 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
426495 TTTATTAAAT
*
426505 AAATTGATAATTA
1 AAATTAATAATTA
*
426518 AAATTAATATTTA
1 AAATTAATAATTA
426531 AAATT--TAATTA
1 AAATTAATAATTA
426542 ATAATTAAATAAT
1 A-AATT-AATAAT
426555 AATACTAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
11 6 0.20
12 4 0.13
13 16 0.53
15 4 0.13
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (13 bp):
AAATTAATAATTA
Found at i:426678 original size:18 final size:18
Alignment explanation
Indices: 426657--426699 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
426647 TATTATAAAG
426657 ATTTTAATT-TTAATATTA
1 ATTTTAATTATTAAT-TTA
426675 A-TTTAATTATTAATTTA
1 ATTTTAATTATTAATTTA
*
426692 TTTTTAAT
1 ATTTTAAT
426700 ATCATTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
ATTTTAATTATTAATTTA
Found at i:426717 original size:28 final size:29
Alignment explanation
Indices: 426659--426722 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 29
426649 TTATAAAGAT
* * * *
426659 TTTAATTTTAATATTAATTTAATTATTAA
1 TTTATTTTTAATATTAATTAAATAATAAA
*
426688 TTTATTTTTAATA-TCATTAAATAATAAA
1 TTTATTTTTAATATTAATTAAATAATAAA
*
426716 TTAATTT
1 TTTATTT
426723 ATTATTTTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
28 17 0.59
29 12 0.41
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (29 bp):
TTTATTTTTAATATTAATTAAATAATAAA
Found at i:426843 original size:10 final size:10
Alignment explanation
Indices: 426810--426835 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
426800 TCTTACTTAC
426810 AATTATAGAT
1 AATTATAGAT
426820 AATTATAGAT
1 AATTATAGAT
426830 AATTAT
1 AATTAT
426836 TTATAATTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (10 bp):
AATTATAGAT
Found at i:428342 original size:7 final size:7
Alignment explanation
Indices: 428330--428354 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
428320 CCAAAACAAA
428330 TATTAAT
1 TATTAAT
428337 TATTAAT
1 TATTAAT
428344 TATTAAT
1 TATTAAT
428351 TATT
1 TATT
428355 TATCCATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TATTAAT
Found at i:428903 original size:16 final size:17
Alignment explanation
Indices: 428877--428908 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
428867 AATTGAAGCA
428877 TATGTTATATATATAAT
1 TATGTTATATATATAAT
428894 TATG-TATATATATAA
1 TATGTTATATATATAA
428909 CAGTTGACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (17 bp):
TATGTTATATATATAAT
Found at i:429177 original size:19 final size:17
Alignment explanation
Indices: 429150--429198 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 17
429140 CAATTGTCAT
429150 TAATAATTTGTATATTAAA
1 TAATAA-TT-TATATTAAA
*
429169 TAATTATTTATATTAAA
1 TAATAATTTATATTAAA
429186 TAAACTAATTTAT
1 T-AA-TAATTTAT
429199 TATATATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
17 10 0.38
18 4 0.15
19 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (17 bp):
TAATAATTTATATTAAA
Found at i:429182 original size:17 final size:16
Alignment explanation
Indices: 429151--429188 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
429141 AATTGTCATT
429151 AATAATTTGTATATTA
1 AATAATTTGTATATTA
*
429167 AATAATTATTTATATTA
1 AATAATT-TGTATATTA
429184 AATAA
1 AATAA
429189 ACTAATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
AATAATTTGTATATTA
Found at i:429373 original size:22 final size:22
Alignment explanation
Indices: 429338--429379 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
429328 ATATATAAAA
*
429338 ATAATAAATAAATTATTAATGT
1 ATAATAAATAAATTAATAATGT
* *
429360 ATAATAATTTAATTAATAAT
1 ATAATAAATAAATTAATAAT
429380 ATTTATTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
ATAATAAATAAATTAATAATGT
Found at i:429396 original size:24 final size:24
Alignment explanation
Indices: 429365--429478 Score: 72
Period size: 24 Copynumber: 4.6 Consensus size: 24
429355 AATGTATAAT
429365 AATTTAATTAATAATATTTATTTA
1 AATTTAATTAATAATATTTATTTA
* * *
429389 AATTTAATAAATAAATAATTATTATT
1 AATTTAATTAAT-AATATTTATT-TA
* * * *
429415 AA-TTAAATAGTCATATTTATTTT
1 AATTTAATTAATAATATTTATTTA
*
429438 AA-TTAA-TAATTAAATATTTAATTAA
1 AATTTAATTAA-T-AATATTT-ATTTA
*
429463 TAATATAATTAATAAT
1 -AATTTAATTAATAAT
429479 TGTTACTATT
Statistics
Matches: 69, Mismatches: 13, Indels: 14
0.72 0.14 0.15
Matches are distributed among these distances:
22 2 0.03
23 9 0.13
24 25 0.36
25 18 0.26
26 8 0.12
27 4 0.06
28 3 0.04
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (24 bp):
AATTTAATTAATAATATTTATTTA
Found at i:429478 original size:19 final size:19
Alignment explanation
Indices: 429437--429479 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
429427 ATATTTATTT
*
429437 TAATTAATAATTAAATATT
1 TAATTAATAATTAAATATA
*
429456 TAATTAATAATATAATTA-A
1 TAATTAATAAT-TAAATATA
429475 TAATT
1 TAATT
429480 GTTACTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TAATTAATAATTAAATATA
Found at i:429519 original size:27 final size:26
Alignment explanation
Indices: 429465--429534 Score: 63
Period size: 27 Copynumber: 2.5 Consensus size: 26
429455 TTAATTAATA
*
429465 ATATAATTAATAATTGTTACTATTTT
1 ATATAATTAATAATTGTTACTATATT
429491 ATATAAATT-ATAATTAGTTA-TAATATT
1 ATAT-AATTAATAATT-GTTACT-ATATT
429518 ATAATACATATAATAAT
1 AT-ATA-AT-TAATAAT
429535 AATAGTATAT
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
26 11 0.31
27 15 0.42
28 4 0.11
29 1 0.03
30 5 0.14
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (26 bp):
ATATAATTAATAATTGTTACTATATT
Found at i:429529 original size:17 final size:18
Alignment explanation
Indices: 429491--429532 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
429481 TTACTATTTT
*
429491 ATATAA-ATTATAATTAG
1 ATATAATATTATAATTAC
*
429508 TTATAATATTATAA-TAC
1 ATATAATATTATAATTAC
429525 ATATAATA
1 ATATAATA
429533 ATAATAGTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 14 0.67
18 7 0.33
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (18 bp):
ATATAATATTATAATTAC
Found at i:429537 original size:33 final size:32
Alignment explanation
Indices: 429491--429577 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 32
429481 TTACTATTTT
*
429491 ATATAAATTATAATTAGTTATAAT-ATTATAATA
1 ATAT-AATAATAATTAGTTATAATAATTA-AATA
*
429524 CATATAATAATAA-TAG-TAT-ATAATTAAGTA
1 -ATATAATAATAATTAGTTATAATAATTAAATA
*
429554 ATATTAATAATAATTAGTAATAAT
1 ATA-TAATAATAATTAGTTATAAT
429578 CTTAAGCTGT
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
29 3 0.07
30 14 0.31
31 10 0.22
32 5 0.11
33 9 0.20
34 4 0.09
ACGTcount: A:0.53, C:0.01, G:0.05, T:0.41
Consensus pattern (32 bp):
ATATAATAATAATTAGTTATAATAATTAAATA
Found at i:429680 original size:24 final size:23
Alignment explanation
Indices: 429653--429710 Score: 55
Period size: 24 Copynumber: 2.4 Consensus size: 23
429643 TATTTATAAT
*
429653 TAACAATTATACTTATTAATTGT-A
1 TAACAATTATA-TAATTAATT-TAA
*
429677 TAACGATTAATATAATTAATTTAA
1 TAACAATT-ATATAATTAATTTAA
429701 TAAACAATTA
1 T-AACAATTA
429711 GTTTTAAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
23 1 0.04
24 18 0.64
25 9 0.32
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.41
Consensus pattern (23 bp):
TAACAATTATATAATTAATTTAA
Found at i:430127 original size:181 final size:179
Alignment explanation
Indices: 429788--430824 Score: 860
Period size: 181 Copynumber: 5.8 Consensus size: 179
429778 TTAATTTAGT
* * * * * * * *
429788 ATGATTTGAAATAAATAAATGTTCAAATTGTTATAACTAATTGAACT-AGTAT-GGTGAATAGAT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGA-T-TCAGTAAACAGAT
* * * * * *
429851 TTATTTATTAAATC-T-CTTATTAATTTTTAAAATATTAATAAATTAATATTATTTTATTTTGAA
64 TTATTTTTTAAATCTTAATTATTAATTTTCATAATATTAATAAATTAGTATTATTTTATTTCGAA
* * * * * * *
429914 CAAACTTATATGAACAAAAATATTTGTTTTATGACAAAACAAAAGGTCATA
129 TAAGCTTGTATGAAGATAAACAATTGTTTTATGACAAAACAAAAGGTCATA
* * * * * * * * *
429965 ATGATTTGAAATAGATAATTATTCATATGGCCTTAACTATTTGAATTGGTTTAGTAAACAAATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCAGTAAACAGATTT
* * *
430030 ATTTTTTAAATCTATCAATTATTAAATTTCATAATATTACTATATTAGTATTATTTTATTTCGAA
66 ATTTTTTAAATCT-T-AATTATTAATTTTCATAATATTAATAAATTAGTATTATTTTATTTCGAA
* *
430095 TAAGCTTGTATGAAGATAAATAATTATTTTATGACAAAACAAAAGG---T-
129 TAAGCTTGTATGAAGATAAACAATTGTTTTATGACAAAACAAAAGGTCATA
* * * * * *
430142 -TGATTGGAAATATATAATTGTTTAAACAGTCATAACTATTTGAACT-ACTT-TGATAAACATAT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGA-TTCAG-TAAACAGAT
*
430204 TTATTTTTTAAATCTTTTACTTATTAATTTTTCA-AATATTAATAAATTAGTATTATTTTATTAT
64 TTATTTTTTAAATC--TTAATTATTAA-TTTTCATAATATTAATAAATTAGTATTATTTTATT-T
* * * * * *
430268 -AAATAGGCTTGTATGATGAAAAAAAATTGTTTTATGACAAAACAAAAGTTCATA
125 CGAATAAGCTTGTATGAAGATAAACAATTGTTTTATGACAAAACAAAAGGTCATA
* * * * * *
430322 ATGATTTCAAATAGATAATTGTTTAAATGGTCATAATTATTTGAACTGATTCAATAAACTGATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCAGTAAACAGATTT
* * * * * *
430387 ATGTTTTAAATCTCTAACTTATCAATTTTTATAATATTAATAAAGTAATATTATTTTATTT-TAG
66 ATTTTTTAAATCT-TAA-TTATTAATTTTCATAATATTAATAAATTAGTATTATTTTATTTCGA-
* * * *
430451 ATAAGCTTTTATGAA-TTGAAACAATTGTTTTATGACAAAATATAAGGTCATA
128 ATAAGCTTGTATGAAGAT-AAACAATTGTTTTATGACAAAACAAAAGGTCATA
* * * * ** *
430503 ATGATTTTAAATAAATAATTGTTCAAATAGTCAAAAATATTTGAACTTG-TTCAACAAATAGATT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAAC-TGATTCAGTAAACAGATT
* * * *
430567 T-TTTTTCTAATTTCATACTTAATAATTTTC-TAA-ATGCTAATAAATTAGTATTATTTTATTTC
65 TATTTTT-TAA-ATCTTAATTATTAATTTTCATAATAT--TAATAAATTAGTATTATTTTATTTC
* * * * * *
430629 GAATAAGCATT-TATG-AGTTGAAGCAATTATTTTATGACTAAACAAAAGATCAAA
126 GAATAAGC-TTGTATGAAGAT-AAACAATTGTTTTATGACAAAACAAAAGGTCATA
* * * * * *
430683 ATGATTTGAAATAGATAATTATTCTAATAGTCTTAACTATTTAAACTGATTCAGGAAACACATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCAGTAAACAGATTT
* * * * * * *
430748 ATTTTTTAAATCCTTACTTATTAATGTTT-AGAATATTATTAATTTAGCAATATTTTACTTCGAA
66 ATTTTTTAAAT-CTTAATTATTAAT-TTTCATAATATTAATAAATTAGTATTATTTTATTTCGAA
430812 TAAGCTTGT-TGAA
129 TAAGCTTGTATGAA
430825 CAGAAATTAA
Statistics
Matches: 692, Mismatches: 128, Indels: 77
0.77 0.14 0.09
Matches are distributed among these distances:
175 1 0.00
176 137 0.20
177 65 0.09
178 4 0.01
179 14 0.02
180 178 0.26
181 286 0.41
182 7 0.01
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (179 bp):
ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTGATTCAGTAAACAGATTT
ATTTTTTAAATCTTAATTATTAATTTTCATAATATTAATAAATTAGTATTATTTTATTTCGAATA
AGCTTGTATGAAGATAAACAATTGTTTTATGACAAAACAAAAGGTCATA
Found at i:431122 original size:179 final size:178
Alignment explanation
Indices: 430896--431346 Score: 635
Period size: 176 Copynumber: 2.5 Consensus size: 178
430886 GTATATATTA
* *
430896 AAACAATTGTTTCTGTTCATACAAGCTTATTTCGAAA-AAAATAATTAAATTTATTAATATTCCA
1 AAACAATTGTTTCTGTCCATACAAGCTTA-TTCAAAATAAAATAATTAAATTTATTAATATTCCA
* * * *
430960 AAATTTAATAAGTAAAAATTTAAAAAATAAAATTGTTTTTTGAACATGTTCGAATAGTTCTAACT
65 AAATTTAATAAGTAAAAATTTAAAAAATAAAATTATTTTTTGAACATGTCCAAATAGATCTAACT
* *
431025 ATTTGAACAATTATTTATTTCAAATAGTTATGACCTTTTGTTTTGTGAT
130 ATTTGAACAATTATCTATTTCAAATAGTTATAACCTTTTGTTTTGTGAT
* *
431074 AAACTAATTGTTTCTATCCATACAAGCTTATTCCAAATAAAATAATTAAATTTATTAATATTCCA
1 AAAC-AATTGTTTCTGTCCATACAAGCTTATTCAAAATAAAATAATTAAATTTATTAATATTCCA
* *
431139 AAATTTAATAAGTAAAAATTT--AAAA-AAATTTATTTTTTGAACATGTCCAAATAGATCTGACT
65 AAATTTAATAAGTAAAAATTTAAAAAATAAAATTATTTTTTGAACATGTCCAAATAGATCTAACT
431201 ATTTGAACAATTATCTATTTCAAATAGTTATAACCTTTTGTTTTGTGAT
130 ATTTGAACAATTATCTATTTCAAATAGTTATAACCTTTTGTTTTGTGAT
* * * * * *
431250 GAACCAATTGTTTTTGTCTATATAAACTTATTCAAAATAAAATAA-TACTAATTTAATAATATTC
1 -AAACAATTGTTTCTGTCCATACAAGCTTATTCAAAATAAAATAATTA--AATTTATTAATATTC
431314 CAACAA-TTAATAAGTAAAAGATTTAAAAAATAA
63 CAA-AATTTAATAAGTAAAA-ATTTAAAAAATAA
431347 TTTAAATTAA
Statistics
Matches: 244, Mismatches: 19, Indels: 17
0.87 0.07 0.06
Matches are distributed among these distances:
175 2 0.01
176 112 0.46
177 37 0.15
178 16 0.07
179 71 0.29
180 4 0.02
181 2 0.01
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (178 bp):
AAACAATTGTTTCTGTCCATACAAGCTTATTCAAAATAAAATAATTAAATTTATTAATATTCCAA
AATTTAATAAGTAAAAATTTAAAAAATAAAATTATTTTTTGAACATGTCCAAATAGATCTAACTA
TTTGAACAATTATCTATTTCAAATAGTTATAACCTTTTGTTTTGTGAT
Found at i:432559 original size:181 final size:178
Alignment explanation
Indices: 432141--432620 Score: 606
Period size: 180 Copynumber: 2.7 Consensus size: 178
432131 TATTAAATCT
* * * * *
432141 CTTATTAACTTTTGAAATATTAATAAATTAATATTATTTTATTTCGAACAAACTTATATGAACAA
1 CTTATTAA-TTTTCAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAA-AA
* * *
432206 AAACATTTGTTTTATGATAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCATATAGC
64 AAACAATTGTTTTATGATAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCAAATAGC
* * * *
432271 CTTAACTATTTGAATTGGTTTGTAAACAAATTTATTTTTTCAATTTATCA
129 CATAACTATTTGAACTGATTTGTAAACAAATTTATTTTTTAAATTTATCA
* * * * *
432321 GTTATTAAATTTCATAATATTACTAGATTAGTATTATTTTATTTCGAATAAGCTTGTATGAAGAT
1 CTTATTAATTTTCA-AATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAA-AA
* * * * * * *
432386 AAATAATTGTTTTATGATAAAATAAAAGGTTATAACGATTGGAAATATATGATTATTCAAATAGT
64 AAACAATTGTTTTATGATAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCAAATAGC
*
432451 CATAACTATTTGAACTGATTTGATAAACAAATTTATTTTTTAAATCT-TCTA
129 CATAACTATTTGAACTGATTTG-TAAACAAATTTATTTTTTAAATTTATC-A
*
432502 CTTATTAATTTTTCAAATATTAATAAATTAGTATTATTTTATTAT-GAATAGGCTTGTATGATAA
1 CTTATTAA-TTTTCAAATATTAATAAATTAGTATTATTTTATT-TCGAATAAGCTTGTATGA-AA
*
432566 AAAACAATTGTTTTATGACAAAACAAAA-GTTCATAATGATTTGAAATAGATAATT
63 AAAACAATTGTTTTATGATAAAACAAAAGGTT-ATAATGATTTGAAATAGATAATT
432621 GTTGAAATGG
Statistics
Matches: 254, Mismatches: 39, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
179 4 0.02
180 128 0.50
181 115 0.45
182 7 0.03
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (178 bp):
CTTATTAATTTTCAAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAAAAAA
ACAATTGTTTTATGATAAAACAAAAGGTTATAATGATTTGAAATAGATAATTATTCAAATAGCCA
TAACTATTTGAACTGATTTGTAAACAAATTTATTTTTTAAATTTATCA
Found at i:432949 original size:19 final size:19
Alignment explanation
Indices: 432925--433074 Score: 63
Period size: 16 Copynumber: 8.7 Consensus size: 19
432915 ATAATATATT
432925 TAATTATTATTATATATAA
1 TAATTATTATTATATATAA
*
432944 TAATTA-TA--AT-CAT--
1 TAATTATTATTATATATAA
432957 TAATT-TTATTA-ATTATAA
1 TAATTATTATTATA-TATAA
*
432975 GTAA-TACTATT-T-TATAA
1 -TAATTATTATTATATATAA
432992 TAA-TATTATT-TGA-ATAA
1 TAATTATTATTAT-ATATAA
*
433009 TATATTATATATTATATTTAA
1 TA-ATTAT-TATTATATATAA
*
433030 TAA-TA-TA-AATAGT-TAA
1 TAATTATTATTATA-TATAA
433046 TAATTA--ATTATAT-TAA
1 TAATTATTATTATATATAA
433062 TAATTATTATTAT
1 TAATTATTATTAT
433075 CTATTTTAAT
Statistics
Matches: 102, Mismatches: 7, Indels: 45
0.66 0.05 0.29
Matches are distributed among these distances:
13 7 0.07
15 3 0.03
16 34 0.33
17 19 0.19
18 9 0.09
19 18 0.18
20 6 0.06
21 6 0.06
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (19 bp):
TAATTATTATTATATATAA
Found at i:433246 original size:13 final size:13
Alignment explanation
Indices: 433228--433252 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
433218 ATAATAAAAA
433228 TTAAATATTTAAT
1 TTAAATATTTAAT
433241 TTAAATATTTAA
1 TTAAATATTTAA
433253 AATTTAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTAAATATTTAAT
Found at i:433526 original size:181 final size:178
Alignment explanation
Indices: 433269--433899 Score: 619
Period size: 181 Copynumber: 3.5 Consensus size: 178
433259 AAATTATTAA
* * * * ** *
433269 TTATTAACA-TTCAAAAAATTAATAAGCAAA-AGATATGAAAAAATAAATCTATTTACCGATCAA
1 TTATTAATATTTC-AAAAATTAATAAG-AAAGAG-T-TTAAAAAATTAATTTATTTACTAAACAA
* *
433332 GTTCAAATAGTTATGACTATTTGAACAATTATTTATTTAAAATCATTATGACCTTTTGTTTTGAC
62 ATTCAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTTGAC
* *
433397 AAAAAACAATTGTTTCAGTTCATAAAAGCTTATCCAAAATAAAATAATAATAAT
127 ATAAAACAATTGTTT-AGTTCATACAAGCTTAT-CAAAATAAAATAATAATAAT
* *
433451 TTCTTAATATTTCAAAAATTAATAAGAAAGAGTTTAAAAAAATTAATTTGTTTACTAAACAAATT
1 TTATTAATATTTCAAAAATTAATAAGAAAGAGTTT-AAAAAATTAATTTATTTACTAAACAAATT
*
433516 CAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTATTTTGTA-AT
65 CAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTTG-ACAT
* *
433580 AAAACAATTGTTTTAGTTCATACAAGCTTATTCGAAATAAAATAATAGTAAT
129 AAAACAATTG-TTTAGTTCATACAAGCTTA-TCAAAATAAAATAATAATAAT
* * * * ** ** *
433632 TTATTAATATTCCAAAAATTAATAAGTAAGTGATTTAAAAAA-TGATTCTATTTACCGAATTATT
1 TTATTAATATTTCAAAAATTAATAAGAAAGAG-TTTAAAAAATTAATT-TATTTACTAAACAAAT
* ** * * * * ** *
433696 TCAAATAATTATGGGTATTTCAACAATTATCTATTTGAAATCAATATTACCTTTTGTTCGGTCAT
64 TCAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTTGACAT
* ** *
433761 ATAACAATTGTTTTTTATCATACAAGC-T-TCAAAATAAAATAATACTAAT
129 AAAACAATTGTTTAGT-TCATACAAGCTTATCAAAATAAAATAATAATAAT
* * * * * * * ***
433810 TTATTAATCTTTCAAAAGTTAATAGGTAAAAAATTTTAAAAATAAATTTATTTA-TCAAACCCGT
1 TTATTAATATTTCAAAAATTAATAAG-AAAGAGTTTAAAAAATTAATTTATTTACT-AAACAAAT
* *
433874 TTAAATATTTATGACTATTTGAACAA
64 TCAAATAGTTATGACTATTTGAACAA
433900 ATGTATAGTT
Statistics
Matches: 371, Mismatches: 65, Indels: 30
0.80 0.14 0.06
Matches are distributed among these distances:
178 79 0.21
179 5 0.01
180 10 0.03
181 244 0.66
182 30 0.08
183 3 0.01
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.39
Consensus pattern (178 bp):
TTATTAATATTTCAAAAATTAATAAGAAAGAGTTTAAAAAATTAATTTATTTACTAAACAAATTC
AAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTGTTTTGACATAA
AACAATTGTTTAGTTCATACAAGCTTATCAAAATAAAATAATAATAAT
Found at i:434073 original size:194 final size:191
Alignment explanation
Indices: 433747--434093 Score: 403
Period size: 194 Copynumber: 1.8 Consensus size: 191
433737 CAATATTACC
* * * * *
433747 TTTTGTTCGGTCATATAACAATTGTTTTTTATCATACAAGCTTCAAAATAAAATAATACTAATTT
1 TTTTGTTCGGTCATAAAACAATTATTATGTATCATACAAGCTTCAAAATAAAATAATACTAATCT
** * ** * **
433812 ATTAATCTTTCAAAAGTTAATAGGTAAAAAATTTTAAAAATAAATTTATTTATCAAACCCGTTTA
66 AACAATCTCTCAAAAGTTAATAACTAAAAAATTTAAAAAATAAATTTATTTATCAAACCAATTTA
* * *
433877 AATATTTATGACTATTTGAACAAATGTATAGTTTAAATTAGTTATTTAAAAAAAAAACATT
131 AATAATTAAGACTATATGAACAAATGTATAGTTTAAATTAGTTATTTAAAAAAAAAACATT
*
433938 TTTTGTTCTGTCATAAAACAATTATTCATGT-TCATACAAGCTTATTCAAAATAAAATAATACTA
1 TTTTGTTCGGTCATAAAACAATTATT-ATGTATCATACAAGC---TTCAAAATAAAATAATACTA
* * * * * *
434002 ATCTAACAATACTCTGAAAA-TTAATAACTGAGAGATTTAAAAAATAAATTTGTTTA-CTGAACC
62 ATCTAACAAT-CTCTCAAAAGTTAATAACTAAAAAATTTAAAAAATAAATTTATTTATC-AAACC
*
434065 AATTTAAATAATTAAGATTATATGAACAA
125 AATTTAAATAATTAAGACTATATGAACAA
434094 CTATCTATTT
Statistics
Matches: 126, Mismatches: 24, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
191 33 0.26
192 2 0.02
193 1 0.01
194 83 0.66
195 7 0.06
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.38
Consensus pattern (191 bp):
TTTTGTTCGGTCATAAAACAATTATTATGTATCATACAAGCTTCAAAATAAAATAATACTAATCT
AACAATCTCTCAAAAGTTAATAACTAAAAAATTTAAAAAATAAATTTATTTATCAAACCAATTTA
AATAATTAAGACTATATGAACAAATGTATAGTTTAAATTAGTTATTTAAAAAAAAAACATT
Found at i:434359 original size:22 final size:22
Alignment explanation
Indices: 434328--434371 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
434318 ATTATTTAAT
* * *
434328 TATTATATATATTAATTTATTA
1 TATTAAATATAATAATCTATTA
434350 TATTAAATATAATAATCTATTA
1 TATTAAATATAATAATCTATTA
434372 AAAATAAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
TATTAAATATAATAATCTATTA
Found at i:434504 original size:15 final size:14
Alignment explanation
Indices: 434437--434505 Score: 56
Period size: 13 Copynumber: 5.0 Consensus size: 14
434427 TAAATTAAAA
*
434437 TAATATTCAGATAAT
1 TAATATT-AAATAAT
*
434452 TAATATTAAATTA-
1 TAATATTAAATAAT
434465 TAATATTTATAATAAT
1 TAATA-TTA-AATAAT
*
434481 T-A-ATTATA-AAT
1 TAATATTAAATAAT
434492 TAATATTAAATAAT
1 TAATATTAAATAAT
434506 ATTATATTAT
Statistics
Matches: 43, Mismatches: 5, Indels: 13
0.70 0.08 0.21
Matches are distributed among these distances:
11 4 0.09
12 2 0.05
13 13 0.30
14 11 0.26
15 12 0.28
16 1 0.02
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (14 bp):
TAATATTAAATAAT
Found at i:434521 original size:27 final size:27
Alignment explanation
Indices: 434397--434515 Score: 72
Period size: 28 Copynumber: 4.4 Consensus size: 27
434387 AGATATCTAT
* *
434397 TAATTAA-TAAAAATCAATAATTAA-AA
1 TAATTAATTATAAATTAAT-ATTAATAA
* * *
434423 TATTTAAATTA-AAA-TAATATTCA-GA
1 TAATT-AATTATAAATTAATATTAATAA
*
434448 TAATTAA-TATTAAATTATAATATTTATAA
1 TAATTAATTA-TAAA-T-TAATATTAATAA
434477 TAATTAATTATAAATTAATATTAAATAA
1 TAATTAATTATAAATTAATATT-AATAA
434505 T-ATTATATTAT
1 TAATTA-ATTAT
434516 CATTAAATAT
Statistics
Matches: 74, Mismatches: 8, Indels: 20
0.73 0.08 0.20
Matches are distributed among these distances:
23 2 0.03
24 2 0.03
25 12 0.16
26 7 0.09
27 16 0.22
28 21 0.28
29 12 0.16
30 2 0.03
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.43
Consensus pattern (27 bp):
TAATTAATTATAAATTAATATTAATAA
Found at i:434535 original size:21 final size:21
Alignment explanation
Indices: 434461--434536 Score: 70
Period size: 21 Copynumber: 3.5 Consensus size: 21
434451 TTAATATTAA
434461 ATTATAA-TAT-TTATAATAATT
1 ATTATAATTATATTA-AATAA-T
434482 AATTATAAATTAATATTAAATAAT
1 -ATTAT-AATTA-TATTAAATAAT
434506 ATTAT-ATTATCATTAAAT-AT
1 ATTATAATTAT-ATTAAATAAT
434526 ATTATAATTAT
1 ATTATAATTAT
434537 TAAATTAATG
Statistics
Matches: 48, Mismatches: 0, Indels: 13
0.79 0.00 0.21
Matches are distributed among these distances:
20 8 0.17
21 16 0.33
22 5 0.10
23 7 0.15
24 3 0.06
25 6 0.12
26 3 0.06
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (21 bp):
ATTATAATTATATTAAATAAT
Found at i:434538 original size:18 final size:18
Alignment explanation
Indices: 434454--434541 Score: 62
Period size: 18 Copynumber: 5.0 Consensus size: 18
434444 CAGATAATTA
434454 ATATTA-AATTA-T-AAT
1 ATATTATAATTATTAAAT
* *
434469 AT-TTATAATAATTAATT
1 ATATTATAATTATTAAAT
*
434486 ATA-AATTAA-TATTAAAT
1 ATATTA-TAATTATTAAAT
*
434503 AATATTATATTATCATTAAAT
1 -ATATTATA--ATTATTAAAT
434524 ATATTATAATTATTAAAT
1 ATATTATAATTATTAAAT
434542 TAATGTTAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 17
0.69 0.10 0.21
Matches are distributed among these distances:
14 3 0.05
15 6 0.11
16 1 0.02
17 11 0.20
18 17 0.31
19 1 0.02
20 9 0.16
21 7 0.13
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (18 bp):
ATATTATAATTATTAAAT
Found at i:435009 original size:180 final size:180
Alignment explanation
Indices: 434665--435151 Score: 407
Period size: 180 Copynumber: 2.7 Consensus size: 180
434655 ATCAATTTTT
* * * *
434665 ATATTAAT-AA-TAATATTATTTTATTTCATATAAGCTTTTATGAACTAAAACAATTATTTTACG
1 ATATTAATAAATTAGTATTATTTTATTTCAAATAAGCATGTATGAACTAAAACAATTATTTTACG
* * *
434728 ATAAAATATAAGGTCATAACAATTTTAAATAGATAATTGTTCAAATAGTAAAAAATATTTGAACT
66 ATAAAAGATAAGGTCAAAACAATTTGAAATAGATAATTGTTCAAATAGTAAAAAATATTTGAACT
** * * * * * * *
434793 TGTTTGGTAAATAGATTTTTTTTCTAATTTCTTACTTAATAATTTTTTGA
131 TGTTCAGCAAACACATTTTTTTTCTAAATCCTTACTTAATAATGTTTAGA
* ** * *
434843 ATGTTAATAAATTAGTATTATTTTATTTCAAATAAGCATGTATGAGTTGAAACAATTATTTTATG
1 ATATTAATAAATTAGTATTATTTTATTTCAAATAAGCATGTATGAACTAAAACAATTATTTTACG
* * * *** *
434908 ACTAAACGA-AAGGTCAAAACTATTTGAAATAGATAATTGTTCTAATAGTCTTAACTATTTGAA-
66 A-TAAAAGATAAGGTCAAAACAATTTGAAATAGATAATTGTTCAAATAGTAAAAAATATTTGAAC
*
434971 TTGATTCAGCAAACACATTTATTTTTC-AAATCCTTACTTATTAATGTTTAGA
130 TTG-TTCAGCAAACACATTT-TTTTTCTAAATCCTTACTTAATAATGTTTAGA
* * * * * * * * * *
435023 ATATTATTAATTTAGCAATATTTTACTAT-GAATAAGCTTGT-TGAAC-AGAAATTAAATGTTTT
1 ATATTAATAAATTAGTATTATTTTA-TTTCAAATAAGCATGTATGAACTA-AAA-CAATTATTTT
* * * ** * * * * * *
435085 AGGACAAAACA-AAAATCATAACAATTGGAGATAGATAATTGTTCAAATAGTCATAACTATTTGA
63 ACGATAAAAGATAAGGTCAAAACAATTTGAAATAGATAATTGTTCAAATAGTAAAAAATATTTGA
435149 ACT
128 ACT
435152 GGTTTGGTAA
Statistics
Matches: 245, Mismatches: 55, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
178 7 0.03
179 61 0.25
180 164 0.67
181 13 0.05
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (180 bp):
ATATTAATAAATTAGTATTATTTTATTTCAAATAAGCATGTATGAACTAAAACAATTATTTTACG
ATAAAAGATAAGGTCAAAACAATTTGAAATAGATAATTGTTCAAATAGTAAAAAATATTTGAACT
TGTTCAGCAAACACATTTTTTTTCTAAATCCTTACTTAATAATGTTTAGA
Found at i:435448 original size:20 final size:19
Alignment explanation
Indices: 435387--435448 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 19
435377 TTACTTATTA
435387 ATATTATTATAATTATATAAT
1 ATATTATT-TAA-TATATAAT
* *
435408 ATAATTAATAAATACTA-AAT
1 AT-ATTATTTAATA-TATAAT
435428 ATATTATTTCAATATATAAT
1 ATATTATTT-AATATATAAT
435448 A
1 A
435449 AACTAGACTA
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
19 7 0.21
20 15 0.45
21 6 0.18
22 5 0.15
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (19 bp):
ATATTATTTAATATATAAT
Found at i:435812 original size:24 final size:26
Alignment explanation
Indices: 435775--435823 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
435765 ATTACTATAT
435775 AATATAAATATATTAGTAACAAATAA
1 AATATAAATATATTAGTAACAAATAA
* *
435801 AATAT-AAT-TATTATTAATAAATA
1 AATATAAATATATTAGTAACAAATA
435824 TTATTAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 13 0.62
25 3 0.14
26 5 0.24
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (26 bp):
AATATAAATATATTAGTAACAAATAA
Found at i:435824 original size:19 final size:18
Alignment explanation
Indices: 435800--435850 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 18
435790 GTAACAAATA
435800 AAATATAATTATTATTAAT
1 AAATAT-ATTATTATTAAT
*
435819 AAATATTATTAATAAATTAAT
1 AAATA-TATT-AT-TATTAAT
435840 AAA-ATATTATT
1 AAATATATTATT
435851 TTATAAAGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
18 2 0.07
19 12 0.44
20 4 0.15
21 9 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATATATTATTATTAAT
Found at i:435825 original size:13 final size:13
Alignment explanation
Indices: 435804--435835 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
435794 CAAATAAAAT
*
435804 ATAATTATTATTA
1 ATAAATATTATTA
435817 ATAAATATTATTA
1 ATAAATATTATTA
435830 ATAAAT
1 ATAAAT
435836 TAATAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
ATAAATATTATTA
Found at i:436009 original size:15 final size:15
Alignment explanation
Indices: 435989--436041 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
435979 ATTTATCAAT
435989 TTAATATATTTAATA
1 TTAATATATTTAATA
*
436004 TTAATATAATTAATA
1 TTAATATATTTAATA
*
436019 TT-ATATTTTTAATA
1 TTAATATATTTAATA
436033 -TAATA-ATTT
1 TTAATATATTT
436042 TAAGTAATCA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
13 4 0.12
14 13 0.39
15 16 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TTAATATATTTAATA
Found at i:436143 original size:43 final size:44
Alignment explanation
Indices: 436086--436172 Score: 115
Period size: 43 Copynumber: 2.0 Consensus size: 44
436076 TAATAACCTT
* *
436086 TAATTATAATTAATTTACTTAAAGTATTAT-TTAATTATTAAATA
1 TAATTATAATTAATTTAATTAAA-TATTATATTAAATATTAAATA
* *
436130 TAATTA-ATTTAATTTAATTAAATATTATATTAAATATTTAATA
1 TAATTATAATTAATTTAATTAAATATTATATTAAATATTAAATA
436173 ATAAAATTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 6 0.16
43 26 0.68
44 6 0.16
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (44 bp):
TAATTATAATTAATTTAATTAAATATTATATTAAATATTAAATA
Found at i:436163 original size:12 final size:12
Alignment explanation
Indices: 436146--436201 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
436136 ATTTAATTTA
436146 ATTAAATATTAT
1 ATTAAATATTAT
436158 ATTAAATATT-T
1 ATTAAATATTAT
* **
436169 AAT-AATAAAAT
1 ATTAAATATTAT
* *
436180 TTTAAATATTCT
1 ATTAAATATTAT
436192 ATTAAATATT
1 ATTAAATATT
436202 TACTAATAAA
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
10 4 0.12
11 5 0.15
12 24 0.73
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTAAATATTAT
Found at i:436171 original size:34 final size:33
Alignment explanation
Indices: 436147--436212 Score: 105
Period size: 34 Copynumber: 2.0 Consensus size: 33
436137 TTTAATTTAA
436147 TTAAATATTATATTAAATATTTAATAATAAAATT
1 TTAAATATTATATTAAATATTTAATAATAAAA-T
* *
436181 TTAAATATTCTATTAAATATTTACTAATAAAA
1 TTAAATATTATATTAAATATTTAATAATAAAA
436213 ATTTTCTTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (33 bp):
TTAAATATTATATTAAATATTTAATAATAAAAT
Found at i:436174 original size:27 final size:23
Alignment explanation
Indices: 436113--436179 Score: 55
Period size: 24 Copynumber: 2.7 Consensus size: 23
436103 CTTAAAGTAT
*
436113 TATTTAATTATTAAATATAATTA
1 TATTTAATAATTAAATATAATTA
436136 -ATTTAATTTAATTAAATATTATATTAAA
1 TATTTAA--TAATTAAATA-TA-ATT--A
*
436164 TATTTAATAATAAAAT
1 TATTTAATAATTAAAT
436180 TTTAAATATT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
22 6 0.17
24 9 0.26
25 2 0.06
26 3 0.09
27 8 0.23
28 1 0.03
29 6 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
TATTTAATAATTAAATATAATTA
Found at i:436376 original size:16 final size:16
Alignment explanation
Indices: 436355--436404 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
436345 TAATAGTATA
*
436355 ATAACTTGATAACATT
1 ATAACTTGATAATATT
*
436371 ATAACTATTATAATATT
1 ATAACT-TGATAATATT
* *
436388 ATTATTTGATAATATT
1 ATAACTTGATAATATT
436404 A
1 A
436405 AGTAAAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
16 16 0.57
17 12 0.43
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (16 bp):
ATAACTTGATAATATT
Found at i:436518 original size:14 final size:15
Alignment explanation
Indices: 436480--436535 Score: 55
Period size: 14 Copynumber: 3.8 Consensus size: 15
436470 GATTAGAATA
*
436480 ATATAA-TATATTATG
1 ATATAATTA-ATTATT
436495 ATAATAATTAATTATT
1 AT-ATAATTAATTATT
436511 AT-TAATTAA-TATT
1 ATATAATTAATTATT
*
436524 TTATAATTAATT
1 ATATAATTAATT
436536 TATAATTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
13 5 0.14
14 14 0.40
15 3 0.09
16 11 0.31
17 2 0.06
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (15 bp):
ATATAATTAATTATT
Found at i:436527 original size:18 final size:19
Alignment explanation
Indices: 436496--436556 Score: 61
Period size: 18 Copynumber: 3.1 Consensus size: 19
436486 TATATTATGA
436496 TAATAATTAATTATTATTAAT
1 TAATAATT--TTATTATTAAT
*
436517 TAAT-ATTTTATAATTAAT
1 TAATAATTTTATTATTAAT
* *
436535 TTATAATTTATATTATAAAT
1 TAATAATTT-TATTATTAAT
436555 TA
1 TA
436557 TTAAATATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
18 13 0.39
19 4 0.12
20 12 0.36
21 4 0.12
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TAATAATTTTATTATTAAT
Done.