Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168071.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_32, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 761692
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.42
Warning! 1000 characters in sequence are not A, C, G, or T
File 2 of 17
Found at i:55712 original size:17 final size:17
Alignment explanation
Indices: 55690--55742 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 17
55680 TAATTTAATT
55690 ATAATTAAATATTTATC
1 ATAATTAAATATTTATC
* *
55707 ATAATTAAATACTTATTT
1 ATAATTAAATATTTA-TC
55725 ATAATATAAATATATTAT
1 ATAAT-TAAATAT-TTAT
55743 AATTAAAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 14 0.47
18 6 0.20
19 7 0.23
20 3 0.10
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (17 bp):
ATAATTAAATATTTATC
Found at i:55852 original size:4 final size:4
Alignment explanation
Indices: 55817--55921 Score: 58
Period size: 4 Copynumber: 25.2 Consensus size: 4
55807 TAAAAAGTAT
*
55817 TTAA TTATA TAAA TATAA TT-A TTAA TTTAA TTAA TTAA -TAA TTAA TTAA
1 TTAA TTA-A TTAA T-TAA TTAA TTAA -TTAA TTAA TTAA TTAA TTAA TTAA
* * *
55866 TTATA TAAGA TAAA TT-- TTAA TTATA TAAA TTAA TTTAA TGTAA TT-A
1 TTA-A TTA-A TTAA TTAA TTAA TTA-A TTAA TTAA -TTAA T-TAA TTAA
55912 TATAA TTAA T
1 T-TAA TTAA T
55922 ACTAAACAAG
Statistics
Matches: 81, Mismatches: 7, Indels: 26
0.71 0.06 0.23
Matches are distributed among these distances:
2 2 0.02
3 8 0.10
4 41 0.51
5 30 0.37
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.49
Consensus pattern (4 bp):
TTAA
Found at i:55860 original size:20 final size:20
Alignment explanation
Indices: 55832--55921 Score: 66
Period size: 20 Copynumber: 4.5 Consensus size: 20
55822 TATATAAATA
*
55832 TAATTATTAATTTAATTAAT
1 TAATAATTAATTTAATTAAT
55852 TAATAATTAA-TTAATT-A-
1 TAATAATTAATTTAATTAAT
* *
55869 T-ATAAGATAAATT--TTAAT
1 TAATAA-TTAATTTAATTAAT
55887 TATATAAATTAATTTAATGTAAT
1 TA-AT-AATTAATTTAAT-TAAT
55910 TATATAATTAAT
1 TA-ATAATTAAT
55922 ACTAAACAAG
Statistics
Matches: 56, Mismatches: 4, Indels: 18
0.72 0.05 0.23
Matches are distributed among these distances:
16 6 0.11
17 5 0.09
18 4 0.07
19 6 0.11
20 16 0.29
21 2 0.04
22 8 0.14
23 9 0.16
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (20 bp):
TAATAATTAATTTAATTAAT
Found at i:56113 original size:28 final size:26
Alignment explanation
Indices: 56063--56114 Score: 68
Period size: 28 Copynumber: 1.9 Consensus size: 26
56053 TTTTATATCT
*
56063 TATATTTATAATTTGTAAATAATAAC
1 TATATTAATAATTTGTAAATAATAAC
*
56089 TATATTAATAAATATTGTAACTAATA
1 TATATTAAT-AAT-TTGTAAATAATA
56115 TATGTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.36
27 3 0.14
28 11 0.50
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (26 bp):
TATATTAATAATTTGTAAATAATAAC
Found at i:56147 original size:23 final size:23
Alignment explanation
Indices: 56120--56163 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
56110 TAATATATGT
56120 TTAAACATTAATAATAAATTAGA
1 TTAAACATTAATAATAAATTAGA
* *
56143 TTAAATATTAATAATATATTA
1 TTAAACATTAATAATAAATTA
56164 AATAATATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (23 bp):
TTAAACATTAATAATAAATTAGA
Found at i:56238 original size:14 final size:14
Alignment explanation
Indices: 56219--56251 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
56209 AATCTATAAC
56219 AATTATTTTGAATT
1 AATTATTTTGAATT
56233 AATTATTTTGAATT
1 AATTATTTTGAATT
56247 AATTA
1 AATTA
56252 AGTTTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (14 bp):
AATTATTTTGAATT
Found at i:58005 original size:174 final size:179
Alignment explanation
Indices: 57583--58608 Score: 512
Period size: 174 Copynumber: 5.7 Consensus size: 179
57573 TTATTCGAAC
* **
57583 TTGTTTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTGTCTTAATATTAATAAA-T
1 TTGTGTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATT
*
57647 ATGTATTATTTTATTCGAAATAAGCTTAGATGAACATAAAAAAATTCTTTTATGACAAAACTAAA
66 A-GTATTATTTTATTCGAAATAAGCTTAGATGAACATAAAAAAATTCTTTTATGACAAAACAAAA
* *
57712 GGTTATAGCTATTTCAAATAGATAATTATTTAAACAGTCCTAATTGTTTAAAT
130 GG-T-TA-CTATTTCAAATAGATAATTATTCAAACAGTCCTAATTATTTAAAT
* * * * * * * *** *
57765 TTGTTTAGAAAACAGAGTCATTTTTTAAATCTCTTTA-TTATAAATTTTTGGATTATTAATAAAT
1 TTGTGTGGTAAACAGATTTATTTTTTAAATCT-TTTACTTATTAATTGTCAAAATATTAATAAAT
* * * * * * *
57829 TAGTATTATTTTATTTTG-AATAAGTTTATATGAA-TTGAAACAATTCTTTTATGACAAAGCAAA
65 TAGTATTATTTTA-TTCGAAATAAGCTTAGATGAACATAAAAAAATTCTTTTATGACAAAACAAA
* ** * *
57892 AGG-T-C-A-TTGAAATAGATAATTATTCAAACTA-TTGTGATTATTT-GAT
129 AGGTTACTATTTCAAATAGATAATTATTCAAAC-AGTCCTAATTATTTAAAT
* * *
57938 TTAGTGTGGTAAACATATTTATTTTTTAAAACTTTTACTTATTAATTGTCAAAATATTAACAAAT
1 TT-GTGTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAAT
* * * * * * *
58003 TAGTATTATTTTAATCCAAATAAGCTT-GTAT-AA-ATAGAAACAATTGTTTTATAATAGAACAA
65 TAGTATTATTTTATTCGAAATAAGCTTAG-ATGAACATA-AAAAAATTCTTTTATGACAAAACAA
* * * * * ** * * *
58065 AATGTCATAACAATTTGAAATAAATAATTACTCAAATTGTCATAACTT-TTTGAAC
128 AAGGT--T-ACTATTTCAAATAGATAATTATTCAAACAGTCCTAA-TTATTTAAAT
* * * * * * ** *
58120 TGGTTTGATACATAGATTTATTTTTTAAATC----ACTTATTAATTTTTGAAATATTAATAGATT
1 TTGTGTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATT
* * * * *
58181 AGTATTACTTTATTCCG-AATAAACTTATG-TGAACA-AAAACATTTTTTTTATGACAAAACAAA
66 AGTATTATTTTATT-CGAAATAAGCTTA-GATGAACATAAAAAAATTCTTTTATGACAAAACAAA
* * * * * * * *
58243 AAGTAATAATGATTTGAAATATATAATTATTCAAATAGT-ATAATTTTTTGAAT
129 AGGT--TACT-ATTTCAAATAGATAATTATTCAAACAGTCCTAATTATTTAAAT
** * * * * * ** * *
58296 TACT-TAGGTAAATAGAATTATTTTTTAAATCTCTTATTTATTAATTTTTGAAATATTAACAATT
1 TTGTGT-GGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAAT
* * * * * * * *
58360 TTGTTTTATTTTATTTCG-AATAAGC-TAGTATGAA-TTGAGAAAATTGTTTTATGAC--AAGAT
65 TAGTATTATTTTA-TTCGAAATAAGCTTAG-ATGAACATAAAAAAATTCTTTTATGACAAAACAA
* * * * * * * * *
58420 AAGGTCATAACAATTTGAATTAGATAATTGTTCATATAGTCTTAACTATTTGAAT
128 AAGGT--T-ACTATTTCAAATAGATAATTATTCAAACAGTCCTAATTATTTAAAT
* * * * ** * * *** * *
58475 TGGTTTGGCAAACAAATTTATTTTTTAAATCCCTTAGTTATTAATTTTTTGAATATTATTAGATT
1 TTGTGTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATT
* * * * * * *
58540 TGTATTGCTTTTATTTTG-AATAAGCTT-GTATGAACA-GAAATAATTGTTTTATGATAAAACAA
66 AGTATT-ATTTTA-TTCGAAATAAGCTTAG-ATGAACATAAAAAAATTCTTTTATGACAAAACAA
58602 AAGGTTA
128 AAGGTTA
58609 TAATGATATT
Statistics
Matches: 656, Mismatches: 145, Indels: 89
0.74 0.16 0.10
Matches are distributed among these distances:
173 12 0.02
174 118 0.18
175 5 0.01
176 36 0.05
177 98 0.15
178 39 0.06
179 72 0.11
180 103 0.16
181 79 0.12
182 85 0.13
183 9 0.01
ACGTcount: A:0.39, C:0.07, G:0.10, T:0.44
Consensus pattern (179 bp):
TTGTGTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATT
AGTATTATTTTATTCGAAATAAGCTTAGATGAACATAAAAAAATTCTTTTATGACAAAACAAAAG
GTTACTATTTCAAATAGATAATTATTCAAACAGTCCTAATTATTTAAAT
Found at i:58186 original size:177 final size:178
Alignment explanation
Indices: 57568--58705 Score: 681
Period size: 182 Copynumber: 6.4 Consensus size: 178
57558 TAATTATGGC
* * * *
57568 CATAATTATTCGAACTT-GTTTGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTGTC
1 CATAACTATTTGAA-TTAGTTTGATAAATAGATTTATTTTTTAAATC---TACTTATTAATT-T-
* * * *
57632 TT--AATATTAATA-AATATGTATTATTTTATT-CGAAATAAGCTTAG-ATGAACATAAAAAAAT
60 TTGAAATATTAACAGATTA-GTATTATTTTATTCCG-AATAAGCTT-GTATGAACA-GAAACAAT
* * * * * * * * * *
57692 TCTTTTATGACAAAACTAAAGGTTATAGCTATTTCAAATAGATAATTATTTAAACAGT
121 TGTTTTATGATAAAACAAAAGGTCATAACAATTTGAAATATATAATTATTCAAATAGT
* * * * * * * *
57750 CCTAATTGTTTAAATTTGTTTAGA-AAACAGAGTCATTTTTTAAATCT-CTTTATTATAAATTTT
1 CATAACTATTTGAATTAGTTT-GATAAATAGATTTATTTTTTAAATCTAC-TTA-T-T-AATTTT
* * * * ** * * ** *
57813 TGGATTATTAATAAATTAGTATTATTTTATTTTGAATAAGTTTATATGAATTGAAACAATTCTTT
61 TGAAATATTAACAGATTAGTATTATTTTATTCCGAATAAGCTTGTATGAACAGAAACAATTGTTT
* * *
57878 TATGACAAAGCAAAAGG---T--C-A-TTGAAATAGATAATTATTCAAACTA-T
126 TATGATAAAACAAAAGGTCATAACAATTTGAAATATATAATTATTCAAA-TAGT
** * * * * * * * * * **
57924 TGTGATTATTTGATTTAGTGTGGTAAACATATTTATTTTTTAAAACTTTTACTTATTAATTGTCA
1 CATAACTATTTGAATTAGTTTGATAAATAGATTTATTTTTT-AAA--TCTACTTATTAATTTTTG
* * * * *
57989 AAATATTAACAAATTAGTATTATTTTAATCCAAATAAGCTTGTATAAATAGAAACAATTGTTTTA
63 AAATATTAACAGATTAGTATTATTTTATTCCGAATAAGCTTGTATGAACAGAAACAATTGTTTTA
* * * * * *
58054 TAATAGAACAAAATGTCATAACAATTTGAAATAAATAATTACTCAAATTGT
128 TGATAAAACAAAAGGTCATAACAATTTGAAATATATAATTATTCAAATAGT
* * * *
58105 CATAACTTTTTGAACTGGTTTGATACATAGATTTATTTTTTAAATC-ACTTATTAATTTTTGAAA
1 CATAACTATTTGAATTAGTTTGATAAATAGATTTATTTTTTAAATCTACTTATTAATTTTTGAAA
* * * * * * * *
58169 TATTAATAGATTAGTATTACTTTATTCCGAATAAACTTATGTGAACAAAAACATTTTTTTTATGA
66 TATTAACAGATTAGTATTATTTTATTCCGAATAAGCTTGTATGAACAGAAACAATTGTTTTATGA
* * * **
58234 CAAAACAAAAAGTAATAATGATTTGAAATATATAATTATTCAAATAGT
131 TAAAACAAAAGGTCATAACAATTTGAAATATATAATTATTCAAATAGT
* * * * * * *
58282 -ATAATTTTTTGAATTACTTAGGTAAATAGAATTATTTTTTAAATCTCTTATTTATTAATTTTTG
1 CATAACTATTTGAATTAGTTTGATAAATAGATTTATTTTTTAAA--TC-TACTTATTAATTTTTG
* * * * **
58346 AAATATTAACA-ATTTTGTTTTATTTTATTTCGAATAAGCTAGTATGAATTGAGAA-AATTGTTT
63 AAATATTAACAGA-TTAGTATTATTTTATTCCGAATAAGCTTGTATGAACAGA-AACAATTGTTT
* * * * * * *
58409 TATG--ACAAGATAAGGTCATAACAATTTGAATTAGATAATTGTTCATATAGT
126 TATGATAAAACAAAAGGTCATAACAATTTGAAATATATAATTATTCAAATAGT
* * ** * * *
58460 CTTAACTATTTGAATTGGTTTGGCAAACAAATTTATTTTTTAAATCCCTTAGTTATTAATTTTTT
1 CATAACTATTTGAATTAGTTTGATAAATAGATTTATTTTTTAAAT--C-TACTTATTAA-TTTTT
** * * ** *
58525 G-AATATTATTAGATTTGTATTGCTTTTATTTTGAATAAGCTTGTATGAACAGAAATAATTGTTT
62 GAAATATTAACAGATTAGTATT-ATTTTATTCCGAATAAGCTTGTATGAACAGAAACAATTGTTT
* ** * * * *
58589 TATGATAAAACAAAAGGTTATAATGATATT-AAGTATAGAATTGTTCAAATGGT
126 TATGATAAAACAAAAGGTCATAACAAT-TTGAAATATATAATTATTCAAATAGT
* * * * *
58642 CATAACTATTTAAATTAGTTCGGTAAACAGATTCATTTTTTAAA-CT-CTTATTAATTTTTGAAA
1 CATAACTATTTGAATTAGTTTGATAAATAGATTTATTTTTTAAATCTACTTATTAATTTTTGAAA
58705 T
66 T
58706 TGTTAATTGT
Statistics
Matches: 745, Mismatches: 169, Indels: 89
0.74 0.17 0.09
Matches are distributed among these distances:
173 1 0.00
174 116 0.16
175 6 0.01
176 43 0.06
177 122 0.16
178 43 0.06
179 68 0.09
180 115 0.15
181 81 0.11
182 143 0.19
183 7 0.01
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.43
Consensus pattern (178 bp):
CATAACTATTTGAATTAGTTTGATAAATAGATTTATTTTTTAAATCTACTTATTAATTTTTGAAA
TATTAACAGATTAGTATTATTTTATTCCGAATAAGCTTGTATGAACAGAAACAATTGTTTTATGA
TAAAACAAAAGGTCATAACAATTTGAAATATATAATTATTCAAATAGT
Found at i:58693 original size:360 final size:354
Alignment explanation
Indices: 57589--58693 Score: 817
Period size: 355 Copynumber: 3.1 Consensus size: 354
57579 GAACTTGTTT
* * ** *
57589 GGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTGTCTTAATATTAATAAA-TATGTAT
1 GGTAAACAGA-TTATTTTTTAAA-CTCTTATTTATTAATTGTCAAAATATTAACAAATTA-GTAT
* * * * *
57653 TATTTTATTCGAAATAAGCTTAG-ATGAACATA-AAAAAATTCTTTTAT-GACAAAACTAAAGGT
63 TATTTTAATCCAAATAAGC-TAGTAT-AA-ATAGAAACAATTGTTTTATAGAC--AACAAAAGGT
* * * * * * * * * * * * * * *
57715 TATAGCTATTTCAAATAGATAATTATTTAAACAGTCCTAATTGTTTAAATTTGTTTAGAAA-ACA
123 CATAACAATTTGAAATAAATAATTACTCAAATAGTCATAACTATTTGAACTGGTTT-GAAACATA
* * * * * * *
57779 GAGTCATTTTTTAAATCTCTTTATTATAAATTTTTGGATTATTAATAAATTAGTATTATTTTATT
187 GATTTATTTTTTAAATCAC-TTA-T-T-AATTTTTGAAATATTAATAGATTAGTATTACTTTATT
** ** *** * * * *
57844 TTGAATAAGTTTATATGAATTGAAACAATTCTTTTATGACAAAGC-AAAAG-----GTCA-TTGA
248 CCGAATAAACTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAAGTAATAATGATTTGA
* * * * * * * * *
57902 AATAGATAATTATTCAAACTATTGTGATTATTTGATTTAGTGT-
313 AATATAGAATTATTCAAA-TAGTATAACTATTTAAATTACT-TA
* * *
57945 GGTAAACATATTTATTTTTTAAAACTTTTACTTATTAATTGTCAAAATATTAACAAATTAGTATT
1 GGTAAACAGA-TTATTTTTT-AAACTCTTATTTATTAATTGTCAAAATATTAACAAATTAGTATT
* * * *
58010 ATTTTAATCCAAATAAGCTTGTATAAATAGAAACAATTGTTTTATAATAGAACAAAATGTCATAA
64 ATTTTAATCCAAATAAGCTAGTATAAATAGAAACAATTGTTTTAT-AGACAACAAAAGGTCATAA
* * *
58075 CAATTTGAAATAAATAATTACTCAAATTGTCATAACTTTTTGAACTGGTTTGATACATAGATTTA
128 CAATTTGAAATAAATAATTACTCAAATAGTCATAACTATTTGAACTGGTTTGAAACATAGATTTA
58140 TTTTTTAAATCACTTATTAATTTTTGAAATATTAATAGATTAGTATTACTTTATTCCGAATAAAC
193 TTTTTTAAATCACTTATTAATTTTTGAAATATTAATAGATTAGTATTACTTTATTCCGAATAAAC
* * * *
58205 TTATGTGAACAAAAACATTTTTTTTATGACAAAACAAAAAGTAATAATGATTTGAAATATATAAT
258 TTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAAGTAATAATGATTTGAAATATAGAAT
* * *
58270 TATTCAAATAGTATAATTTTTTGAATTACTTA
323 TATTCAAATAGTATAACTATTTAAATTACTTA
* * ** * * *
58302 GGTAAATAGAATTATTTTTTAAATCTCTTATTTATTAATTTTTGAAATATTAACAATTTTGTTTT
1 GGTAAACAG-ATTATTTTTTAAA-CTCTTATTTATTAATTGTCAAAATATTAACAAATTAGTATT
* * * * * * *
58367 ATTTTATTTCGAATAAGCTAGTATGAATTGAGAA-AATTGTTTTAT-GACAAGATAAGGTCATAA
64 ATTTTAATCCAAATAAGCTAGTATAAATAGA-AACAATTGTTTTATAGACAACAAAAGGTCATAA
* * ** * * *
58430 CAATTTGAATTAGATAATTGTTCATATAGTCTTAACTATTTGAATTGGTTTGGCAAACA-A-ATT
128 CAATTTGAAATAAATAATTACTCAAATAGTCATAACTATTTGAACTGGTTT-G-AAACATAGATT
* * * * **
58493 TATTTTTTAAATCCCTTAGTTATTAATTTTTTG-AATATTATTAGATTTGTATTGCTTTTATTTT
191 TATTTTTTAAAT--C--ACTTATTAA-TTTTTGAAATATTAATAGATTAGTATTAC-TTTATTCC
* * * * * * *
58557 GAATAAGCTTGTATGAACAGAAATAATTGTTTTATGATAAAACAAAAGGTTATAATGATATT-AA
250 GAATAAACTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAAGTAATAATGAT-TTGAA
* * * * *
58621 GTATAGAATTGTTCAAATGGTCATAACTATTTAAATTAGTTC
314 ATATAGAATTATTCAAATAGT-ATAACTATTTAAATTACTTA
58663 GGTAAACAGATTCATTTTTTAAACTCTTATT
1 GGTAAACAGATT-ATTTTTTAAACTCTTATT
58694 AATTTTTGAA
Statistics
Matches: 606, Mismatches: 114, Indels: 54
0.78 0.15 0.07
Matches are distributed among these distances:
351 67 0.11
352 6 0.01
353 1 0.00
354 9 0.01
355 154 0.25
356 78 0.13
357 114 0.19
358 24 0.04
359 27 0.04
360 91 0.15
361 35 0.06
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (354 bp):
GGTAAACAGATTATTTTTTAAACTCTTATTTATTAATTGTCAAAATATTAACAAATTAGTATTAT
TTTAATCCAAATAAGCTAGTATAAATAGAAACAATTGTTTTATAGACAACAAAAGGTCATAACAA
TTTGAAATAAATAATTACTCAAATAGTCATAACTATTTGAACTGGTTTGAAACATAGATTTATTT
TTTAAATCACTTATTAATTTTTGAAATATTAATAGATTAGTATTACTTTATTCCGAATAAACTTA
TATGAACAAAAACAATTGTTTTATGACAAAACAAAAAGTAATAATGATTTGAAATATAGAATTAT
TCAAATAGTATAACTATTTAAATTACTTA
Found at i:61175 original size:35 final size:37
Alignment explanation
Indices: 61087--61180 Score: 102
Period size: 40 Copynumber: 2.5 Consensus size: 37
61077 CAATCCAATT
* *
61087 TAATATTAAATTATAATATATTAATTTATTAATTTATGA
1 TAATATTAAA-TATATTATATTAATTCATTAA-TTATGA
* *
61126 TAATTAGTATAATATATTATATTAA-TCATTAA-TATTA
1 TAA-TATTA-AATATATTATATTAATTCATTAATTATGA
61163 TAATATTAAATATATTAT
1 TAATATTAAATATATTAT
61181 TAATAATCTA
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
35 10 0.21
36 4 0.08
37 7 0.15
39 9 0.19
40 16 0.33
41 2 0.04
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50
Consensus pattern (37 bp):
TAATATTAAATATATTATATTAATTCATTAATTATGA
Found at i:61623 original size:19 final size:20
Alignment explanation
Indices: 61593--61632 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
61583 TATAATTGAA
61593 TATTTAAAAATAATAA-ATAT
1 TATTTAAAAAT-ATAATATAT
61613 TATTT-AAAATATAATATAT
1 TATTTAAAAATATAATATAT
61632 T
1 T
61633 TCACATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 10 0.53
20 5 0.26
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TATTTAAAAATATAATATAT
Found at i:61626 original size:21 final size:21
Alignment explanation
Indices: 61557--61628 Score: 65
Period size: 21 Copynumber: 3.3 Consensus size: 21
61547 TAGCTTAATA
*
61557 ATAATTAATATTAATTATAAATAT
1 ATAATAAATATT-ATT-TAAA-AT
* * *
61581 ATTATAATTGAATATTTAAAA-
1 ATAATAAAT-ATTATTTAAAAT
61602 ATAATAAATATTATTTAAAAT
1 ATAATAAATATTATTTAAAAT
61623 ATAATA
1 ATAATA
61629 TATTTCACAT
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
20 10 0.26
21 13 0.33
22 1 0.03
23 4 0.10
24 9 0.23
25 2 0.05
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (21 bp):
ATAATAAATATTATTTAAAAT
Found at i:62105 original size:18 final size:18
Alignment explanation
Indices: 62079--62127 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
62069 CAAATATCAT
*
62079 AATAATATAT-ATTATTAG
1 AATATTATATAATTATT-G
*
62097 AATATTATATAATTATTT
1 AATATTATATAATTATTG
62115 AATATTAT-TAATT
1 AATATTATATAATT
62128 TAATATTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 5 0.18
18 17 0.61
19 6 0.21
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (18 bp):
AATATTATATAATTATTG
Found at i:62419 original size:18 final size:18
Alignment explanation
Indices: 62377--62422 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
62367 TACTCTTAAA
*
62377 AATTATTTAATAAATAAT
1 AATTATATAATAAATAAT
*
62395 AAATATATAATAAATAACT
1 AATTATATAATAAATAA-T
62414 -ATTATATAA
1 AATTATATAA
62423 GTTAATTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 23 0.96
19 1 0.04
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (18 bp):
AATTATATAATAAATAAT
Found at i:62605 original size:18 final size:18
Alignment explanation
Indices: 62594--62635 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
62584 ATATTATTTA
62594 ATAATTAAATATCATATT
1 ATAATTAAATATCATATT
* *
62612 ATAATTAGATA--ATATC
1 ATAATTAAATATCATATT
62628 ATAATTAA
1 ATAATTAA
62636 TGATATTATG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 11 0.52
18 10 0.48
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (18 bp):
ATAATTAAATATCATATT
Found at i:63682 original size:19 final size:18
Alignment explanation
Indices: 63658--63706 Score: 66
Period size: 19 Copynumber: 2.8 Consensus size: 18
63648 TTAATTTTAT
*
63658 ATTAATTTAACTAATATAA
1 ATTAATTTAAAT-ATATAA
63677 ATTAATTTAAATATATAA
1 ATTAATTTAAATATATAA
63695 ATT-A-TTAAATAT
1 ATTAATTTAAATAT
63707 TTAATTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
16 8 0.28
17 1 0.03
18 9 0.31
19 11 0.38
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
ATTAATTTAAATATATAA
Found at i:63702 original size:16 final size:16
Alignment explanation
Indices: 63671--63718 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
63661 AATTTAACTA
63671 ATATAAATTAATTTAAAT
1 ATATAAATT-A-TTAAAT
63689 ATATAAATTATTAAAT
1 ATATAAATTATTAAAT
* *
63705 ATTTAATTTATTAA
1 ATATAAATTATTAA
63719 TATTAATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 18 0.64
17 1 0.04
18 9 0.32
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATATAAATTATTAAAT
Found at i:63706 original size:14 final size:17
Alignment explanation
Indices: 63658--63698 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 17
63648 TTAATTTTAT
63658 ATTAATTTAACTAATATAA
1 ATTAATTTAA--AATATAA
63677 ATTAATTTAAATATATAA
1 ATTAATTTAAA-ATATAA
63695 ATTA
1 ATTA
63699 TTAAATATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 1 0.05
18 10 0.48
19 10 0.48
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTAATTTAAAATATAA
Found at i:63753 original size:23 final size:24
Alignment explanation
Indices: 63711--63755 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
63701 AAATATTTAA
63711 TTTATTAATATTAATAAATATATG
1 TTTATTAATATTAATAAATATATG
* *
63735 TTTATTGA-ATTAATTAATATA
1 TTTATTAATATTAATAAATATA
63756 AATATTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (24 bp):
TTTATTAATATTAATAAATATATG
Found at i:64215 original size:180 final size:182
Alignment explanation
Indices: 64002--64412 Score: 454
Period size: 180 Copynumber: 2.3 Consensus size: 182
63992 TTATACTATT
* * * *
64002 TTATTTGAAATAAAATAAAACTAATTTAATAATATTCT-GAAACTTAATAACCAAGAAAATTAAA
1 TTATTTGGAATAAAATAATACTAATTTAATAATATTCTCAAAAATTAATAACCAAGAAAATTAAA
* * * * * *
64066 AAATAAATCTAATTACCGAACCAGTTGAAATTGTTAAGATTATATA-AATGATTATCCACTTCAA
66 AAAGAAATCTAATTACCGAACCAATTCAAATAGTTAAGACTAT-TAGAATAATTATCCACTTCAA
* * * * ** *
64130 ATCGTTATGACCTTTTCTTTTGTCGTAAAACAATTGTTTT-GTTTGTAGAAGC
130 ATCGTTATGACATTTTATTTGGTCATAAAACAATTGTTTTAGTTCATAAAAGC
* * * *
64182 TTATTTGGATTAAAATAATACTAATTTAATAATATT-TCAAAAATTAATAACTAAGAGATTTAAA
1 TTATTTGGAATAAAATAATACTAATTTAATAATATTCTCAAAAATTAATAACCAAGAAAATTAAA
* ** * * *
64246 AAAGAAATTTGTTTACCGAATCAATTCAAATAGTTAAGACTATTAGAATAATTATCTATTTCAAA
66 AAAGAAATCTAATTACCGAACCAATTCAAATAGTTAAGACTATTAGAATAATTATCCACTTCAAA
* * * *
64311 TCGTTCTGATATTTTATTTGGTTATAAAACAATTGTTTTAGTTCATAAAAGG
131 TCGTTATGACATTTTATTTGGTCATAAAACAATTGTTTTAGTTCATAAAAGC
* * * * *
64363 TTATTTAGAATAAATTAATACTAATTTAGTAACATTC-AAAAAATTAATAA
1 TTATTTGGAATAAAATAATACTAATTTAATAATATTCTCAAAAATTAATAA
64413 AAATGAGATT
Statistics
Matches: 190, Mismatches: 37, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
179 3 0.02
180 136 0.72
181 51 0.27
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.38
Consensus pattern (182 bp):
TTATTTGGAATAAAATAATACTAATTTAATAATATTCTCAAAAATTAATAACCAAGAAAATTAAA
AAAGAAATCTAATTACCGAACCAATTCAAATAGTTAAGACTATTAGAATAATTATCCACTTCAAA
TCGTTATGACATTTTATTTGGTCATAAAACAATTGTTTTAGTTCATAAAAGC
Found at i:65832 original size:467 final size:467
Alignment explanation
Indices: 64966--65832 Score: 1011
Period size: 469 Copynumber: 1.9 Consensus size: 467
64956 TTGTTTTTGA
* * * *
64966 TCATACAAGCTTATTTAAAATAAAATAATACTAATTTATTAGTATTTCAAAAATTAATAAGAGAT
1 TCATAAAAGCTTATTCAAAATAAAATAATACTAACTTATTAATATTTCAAAAATTAATAAGAGAT
* *
65031 TTAAAAAATAAATTTGCTTACCAAAGAAGTTCAAATAGTTATAACTATTCGAACAATTATCAATC
66 TTAAAAAATAAATTTGCTTACCAAACAAATTCAAATAGTTATAACTATTCGAACAATTATCAATC
* * * * **
65096 TTAAATCGTTAAGATCTTTGTTTTGTCATAAAAAAATTATCTCTAATCATATAAGCTTATTCGGT
131 TTAAATCATTAAGACCTTTGTTTTATCATAAAAAAATTATCTCTAATCATATAAGCTTATTAGAA
65161 TAAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAAATAAATA
196 TAAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAAATAAATA
* * *
65226 TGCTTGTAGAATCAATTCAAAAAGTTAAAACCATTAGAATAATTATCTATTTCAGATCATTTTGA
261 TGCTTGTAGAATCAATTCAAAAAGTTAAAACCATTACAACAATTATCTATTTCAAATCATTTTGA
* * * * * * *
65291 TATTTTGTTTAGTCATAAAATATTTGTTTCATATCTTGCAAGCTTATTCAGAATAAAATAATCCA
326 CATTTTCTTTAGTCATAAAACAATTGTTTCATATCATACAAGCTTATTCAGAATAAAATAATACA
65356 AATTTATTAACATTCAAAAAATTAATAAGCAAAATATTTGAAAAATAAATCTATTTAACATTCGC
391 AATTTATTAACATTCAAAAAATTAATAAGCAAAATATTTGAAAAATAAATCTATTTAACATTCGC
65421 AATTGTTTCAGT
456 AATTGTTTCAGT
* *
65433 TCATAAAAGCTTATTCAAAATAAAATAATACTAACTTCTTAATATTTCAAAAGTTAATAAGCAAG
1 TCATAAAAGCTTATTCAAAATAAAATAATACTAACTTATTAATATTTCAAAAATTAATAAG--AG
* * * * * *
65498 AGTTTAAAAAAATAAATTTGTTTACTAAACAAATTCAAATAGTTA-GA-TATTTGAATAATTGTC
64 A-TTT-AAAAAATAAATTTGCTTACCAAACAAATTCAAATAGTTATAACTATTCGAACAATTATC
* * * * * *
65561 -TTTTTAAAATCATTATGACCTTTAG-TTTATCATAAAACAATTGTTTC-AATTCATATAAGCTT
127 AATCTT-AAATCATTAAGACCTTT-GTTTTATCATAAAAAAATTATCTCTAA-TCATATAAGCTT
* * *
65623 ATTTAGAAT-AAAATAATACTAATTTATTAATATTTCAAAAATTTATAAGTAAGTGATTT-AAAA
189 A-TTAGAATAAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAA
* * * * * * *** *
65686 AGTGAATTTG-TT-TACCGAATCAGTTTAAGTAA-TTATGGCCATCT-CAACAATTATCTGTTTC
253 AATAAATATGCTTGTA--GAATCAATTCAA-AAAGTTAAAACCAT-TACAACAATTATCTATTTC
** * * * * * * *
65747 AAATTGTTTTTACCTTTTCTTTAGTCATATAACAATTGTTT-TTATCATACAAGGTTGTTCTGAA
314 AAATCATTTTGACATTTTCTTTAGTCATAAAACAATTGTTTCATATCATACAAGCTTATTCAGAA
*
65811 TAAAATAATACTAATTTATTAA
379 TAAAATAATACAAATTTATTAA
65833 TCTATTAACA
Statistics
Matches: 329, Mismatches: 59, Indels: 24
0.80 0.14 0.06
Matches are distributed among these distances:
466 2 0.01
467 94 0.29
468 78 0.24
469 111 0.34
470 9 0.03
471 35 0.11
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (467 bp):
TCATAAAAGCTTATTCAAAATAAAATAATACTAACTTATTAATATTTCAAAAATTAATAAGAGAT
TTAAAAAATAAATTTGCTTACCAAACAAATTCAAATAGTTATAACTATTCGAACAATTATCAATC
TTAAATCATTAAGACCTTTGTTTTATCATAAAAAAATTATCTCTAATCATATAAGCTTATTAGAA
TAAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAAATAAATA
TGCTTGTAGAATCAATTCAAAAAGTTAAAACCATTACAACAATTATCTATTTCAAATCATTTTGA
CATTTTCTTTAGTCATAAAACAATTGTTTCATATCATACAAGCTTATTCAGAATAAAATAATACA
AATTTATTAACATTCAAAAAATTAATAAGCAAAATATTTGAAAAATAAATCTATTTAACATTCGC
AATTGTTTCAGT
Found at i:66101 original size:16 final size:17
Alignment explanation
Indices: 66079--66118 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
66069 CTTAAACCTA
66079 TAAAATATTAAT-ATTT
1 TAAAATATTAATAATTT
* *
66095 TATAATATTAGTAATTT
1 TAAAATATTAATAATTT
66112 TAAAATA
1 TAAAATA
66119 ATTACAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 10 0.50
17 10 0.50
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (17 bp):
TAAAATATTAATAATTT
Found at i:67237 original size:21 final size:20
Alignment explanation
Indices: 67203--67268 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 20
67193 AGTATTGTAA
67203 ATTATTA-A-AATAATTATT
1 ATTATTATATAATAATTATT
* *
67221 ATTATCTATATAATAATAATA
1 ATTAT-TATATAATAATTATT
*
67242 ATTAATTATATTATAAATTATTT
1 ATT-ATTATATAAT-AATTA-TT
67265 ATTA
1 ATTA
67269 AATTTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
18 5 0.14
19 2 0.05
20 1 0.03
21 18 0.49
22 7 0.19
23 4 0.11
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTATTATATAATAATTATT
Found at i:67686 original size:13 final size:13
Alignment explanation
Indices: 67668--67697 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
67658 GTCTATTTTT
67668 ATTATTATAATTA
1 ATTATTATAATTA
*
67681 ATTATTTTAATTA
1 ATTATTATAATTA
67694 ATTA
1 ATTA
67698 ATTAATCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
ATTATTATAATTA
Found at i:67688 original size:21 final size:21
Alignment explanation
Indices: 67661--67716 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
67651 TATTAATGTC
* *
67661 TATTTTTATTATTATAATTAAT
1 TATTTTAATTAAT-TAATTAAT
67683 TATTTTAATTAATTAATTAAT
1 TATTTTAATTAATTAATTAAT
*
67704 CAATTTTAATTAA
1 -TATTTTAATTAA
67717 ATATTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
21 8 0.27
22 22 0.73
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
TATTTTAATTAATTAATTAAT
Found at i:68692 original size:13 final size:13
Alignment explanation
Indices: 68674--68707 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
68664 TAGTTTATAA
68674 ATTATTAAAAATT
1 ATTATTAAAAATT
*
68687 ATTATTAACAATT
1 ATTATTAAAAATT
68700 ATTTATTA
1 A-TTATTA
68708 GTATTATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (13 bp):
ATTATTAAAAATT
Found at i:69406 original size:25 final size:25
Alignment explanation
Indices: 69356--69423 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 25
69346 CCAATTTTGT
*
69356 TTTATATTTT-TGT-TAT-TTTTAT
1 TTTATATTTTATGTATATATTTTAC
*
69378 TTTATATTTTATGTATATATTTTCC
1 TTTATATTTTATGTATATATTTTAC
** *
69403 TTTATATCCTATGTATTTATT
1 TTTATATTTTATGTATATATT
69424 ATTTATTTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
22 10 0.26
23 3 0.08
24 3 0.08
25 22 0.58
ACGTcount: A:0.22, C:0.06, G:0.04, T:0.68
Consensus pattern (25 bp):
TTTATATTTTATGTATATATTTTAC
Found at i:70512 original size:4 final size:4
Alignment explanation
Indices: 70454--70496 Score: 61
Period size: 4 Copynumber: 10.8 Consensus size: 4
70444 TTTTTTTTGA
*
70454 ATTT ATTT ATTT ATTT GTTTT ATTT ATTT ATTT A-TT ATTT ATT
1 ATTT ATTT ATTT ATTT -ATTT ATTT ATTT ATTT ATTT ATTT ATT
70497 AGATTATGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 3 0.09
4 29 0.83
5 3 0.09
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:70581 original size:24 final size:25
Alignment explanation
Indices: 70548--70599 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
70538 TGTATTTTTG
*
70548 TTTTACTTTTCTTTTTTTAATT-TAT
1 TTTTACTTTTCTTTTATT-ATTCTAT
*
70573 TTTTA-TTTTGTTTTATTATTCTAT
1 TTTTACTTTTCTTTTATTATTCTAT
70597 TTT
1 TTT
70600 CTTTAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 3 0.12
24 16 0.67
25 5 0.21
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.77
Consensus pattern (25 bp):
TTTTACTTTTCTTTTATTATTCTAT
Found at i:70702 original size:59 final size:61
Alignment explanation
Indices: 70636--71394 Score: 989
Period size: 59 Copynumber: 12.9 Consensus size: 61
70626 TTTTTGGGGA
* *
70636 AAAAATTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT
1 AAAAGTTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *** * *
70697 -AAATTTTC--AAAAAAGGGTTTTTGAGGGAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
1 AAAAGTTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* * *
70755 CAAAGTTTCAAAAAAACAT-TTTTTG-GGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT
1 AAAAGTTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
*
70814 AAAA-TTT-AAAAAAAATATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAAAGTTTCAAAAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
70874 AAAA-TTTCAAAAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAAAGTTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *** * *
70934 -AAATTTTC--AAAAAAGGGTTTTTGAGGGAAAGTTGAAAGTATCAAATTTT-CTTGAAAAT
1 AAAAGTTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATC-AATTTTCCTTAAAAAT
* *
70992 CAAAGTTTCAAAAAAACAT-TTTTTGA-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAAAGTTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
71051 AAAA-TTTCAAAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAAAGTTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
71110 AAAA-TTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAAAGTTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *** * *
71170 -AAATTTTC--AAAAAAGGGTTTTTGAGGGAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
1 AAAAGTTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
71228 CAAAGTTTCAAAAAAACAT-TTTTTGA-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAAAGTTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
**
71287 -AAA-TTTC-AAAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCC-TCGAAAT
1 AAAAGTTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* * *
71343 TAAAGTTTC-AAAAAAAATATTTTTGGGGAAAAGTTTAAAGTATCAATTTTCC
1 AAAAGTTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
71395 CTACACAAAA
Statistics
Matches: 622, Mismatches: 51, Indels: 52
0.86 0.07 0.07
Matches are distributed among these distances:
56 13 0.02
57 45 0.07
58 172 0.28
59 220 0.35
60 150 0.24
61 22 0.04
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (61 bp):
AAAAGTTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
Found at i:71225 original size:236 final size:236
Alignment explanation
Indices: 70637--71394 Score: 1346
Period size: 236 Copynumber: 3.2 Consensus size: 236
70627 TTTTGGGGAA
*
70637 AAAATTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATT
1 AAAATTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATT
70702 TTCAAAAAAGGGTTTTTGAGGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAA
66 TTCAAAAAAGGGTTTTTGAGGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAA
* *
70767 AAAACATTTTTTGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTT-AAAAAAAATA
131 AAAACATTTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAA-A
*
70831 TATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
195 TATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
70874 AAAATTTCAAAAAAATATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATT
1 AAAATTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATT
70939 TTCAAAAAAGGGTTTTTGAGGGAAAGTTGAAAGTATCAAATTTT-CTTGAAAATCAAAGTTTCAA
66 TTCAAAAAAGGGTTTTTGAGGGAAAGTTGAAAGTATC-AATTTTCCTTGAAAATCAAAGTTTCAA
71003 AAAAACATTTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAAA
130 AAAAACATTTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAAA
71068 TATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
195 TATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
71110 AAAATTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATT
1 AAAATTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATT
71175 TTCAAAAAAGGGTTTTTGAGGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAA
66 TTCAAAAAAGGGTTTTTGAGGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAA
71240 AAAACATTTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTC-AAAAAAAAT
131 AAAACATTTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAAAT
** *
71303 ATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATT
196 ATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* * *
71344 AAAGTTTC-AAAAAAAATATTTTTGGGGAAAAGTTTAAAGTATCAATTTTCC
1 AAAATTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
71395 CTACACAAAA
Statistics
Matches: 504, Mismatches: 14, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
233 41 0.08
234 54 0.11
235 13 0.03
236 201 0.40
237 181 0.36
238 14 0.03
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (236 bp):
AAAATTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATT
TTCAAAAAAGGGTTTTTGAGGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAA
AAAACATTTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAAAT
ATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
Found at i:79761 original size:8 final size:8
Alignment explanation
Indices: 79748--79819 Score: 83
Period size: 8 Copynumber: 8.9 Consensus size: 8
79738 ATACTATGCT
79748 TGAAAAAA
1 TGAAAAAA
79756 TG-AAAAA
1 TGAAAAAA
79763 TGGAAAAAA
1 T-GAAAAAA
*
79772 TTAAAAAA
1 TGAAAAAA
79780 TGAAAAAAA
1 TG-AAAAAA
*
79789 TAAAAAAA
1 TGAAAAAA
*
79797 TAAAAAAA
1 TGAAAAAA
*
79805 TTAAAAAA
1 TGAAAAAA
79813 TGAAAAA
1 TGAAAAA
79820 TGAGGACTCA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
7 6 0.11
8 37 0.66
9 13 0.23
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.15
Consensus pattern (8 bp):
TGAAAAAA
Found at i:79795 original size:16 final size:16
Alignment explanation
Indices: 79750--79819 Score: 88
Period size: 17 Copynumber: 4.2 Consensus size: 16
79740 ACTATGCTTG
*
79750 AAAAAATGAAAAATGGA
1 AAAAAATAAAAAAT-GA
*
79767 AAAAATTAAAAAATGA
1 AAAAAATAAAAAATGA
79783 AAAAAATAAAAAAAT-A
1 AAAAAAT-AAAAAATGA
79799 AAAAAATTAAAAAATGA
1 AAAAAA-TAAAAAATGA
79816 AAAA
1 AAAA
79820 TGAGGACTCA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
16 22 0.47
17 25 0.53
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (16 bp):
AAAAAATAAAAAATGA
Found at i:80871 original size:42 final size:42
Alignment explanation
Indices: 80824--81238 Score: 371
Period size: 41 Copynumber: 9.7 Consensus size: 42
80814 CATGATTGTC
*
80824 GAGGAGCAATTTACTTTTCCAAAGTCATGGTGCCTCTGTTTA
1 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
80866 GAGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTA
1 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
*
80907 GAGGAGCAATTTATTTTTCCAAAGT-GTGGTGCCTCTGTTTA
1 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
*
80948 GAAGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTA
1 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
*
80989 GAGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTA
1 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
* * * * **** * * *
81031 GAGGATCTATTTAGAGGAGCAATTTACTTTCTCAAAGTCGTG-GTGCCTCTGTT-
1 GAGGAGCAATTT-----A-C-TTTTCCAAAGTC---GTGGTGCCT--CTGT-TTA
* * * *** *
81084 TA-GAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTATTTA
1 GAGGAGCA--ATTTACTTTTC-CAAAGTCGTGGTGCCTCTGTTTA
81128 GAGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTA
1 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
* * *
81169 GAGGAGCAATTTA-TTTTCCAAAGTCGTTGAGCCTCTGATTA
1 GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
*
81210 GAGGAGCCATTTA-TGTTTCTCAAAGTCGT
1 GAGGAGCAATTTACT-TTTC-CAAAGTCGT
81239 TGAAACTCTG
Statistics
Matches: 303, Mismatches: 45, Indels: 49
0.76 0.11 0.12
Matches are distributed among these distances:
40 14 0.05
41 164 0.54
42 64 0.21
43 17 0.06
44 4 0.01
45 9 0.03
46 1 0.00
47 4 0.01
48 4 0.01
49 5 0.02
51 1 0.00
52 7 0.02
53 4 0.01
54 5 0.02
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.36
Consensus pattern (42 bp):
GAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTA
Found at i:81069 original size:55 final size:55
Alignment explanation
Indices: 80985--81090 Score: 196
Period size: 55 Copynumber: 1.9 Consensus size: 55
80975 GGTGCCTCTG
80985 TTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGATCTA
1 TTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGATCTA
81040 TTTAGAGGAGCAATTTACTTTCTC-AAAGTCGTGGTGCCTCTGTTTAGAGGA
1 TTTAGAGGAGCAATTTACTTT-TCAAAAGTCGTGGTGCCTCTGTTTAGAGGA
81091 GCAATTTACT
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
55 48 0.96
56 2 0.04
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.36
Consensus pattern (55 bp):
TTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGATCTA
Found at i:81110 original size:97 final size:96
Alignment explanation
Indices: 80944--81214 Score: 367
Period size: 97 Copynumber: 3.0 Consensus size: 96
80934 GGTGCCTCTG
*
80944 TTTAGAAGAGCAATTTACTTTC-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTT-T
1 TTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCT
81007 CAAAAGTCGTGGTGCCTCTGTTTAGAGGATCTA
66 C-AAAGTCGTGGTGCCTCTG-TTAGAGGATCTA
81040 TTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCT
1 TTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCT
81105 CAAAGTCGTGGTG-C-C----------TCTA
66 CAAAGTCGTGGTGCCTCTGTTAGAGGATCTA
*
81124 TTTAGAGGAGCAATTTACTTT-TCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTC-
1 TTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCT
* *
81187 CAAAGTCGTTGAGCCTCTGATTAGAGGA
66 CAAAGTCGTGGTGCCTCTG-TTAGAGGA
81215 GCCATTTATG
Statistics
Matches: 156, Mismatches: 4, Indels: 31
0.82 0.02 0.16
Matches are distributed among these distances:
82 11 0.07
83 42 0.27
84 26 0.17
95 1 0.01
96 22 0.14
97 52 0.33
98 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (96 bp):
TTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCT
CAAAGTCGTGGTGCCTCTGTTAGAGGATCTA
Found at i:81176 original size:83 final size:83
Alignment explanation
Indices: 81036--81238 Score: 320
Period size: 83 Copynumber: 2.4 Consensus size: 83
81026 GTTTAGAGGA
81036 TCTATTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT
1 TCTATTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT
*
81101 TTCTCAAAGTCGTGGTGCC
66 TTC-CAAAGTCGTGGAGCC
*
81120 TCTATTTAGAGGAGCAATTTACTTT-TCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATT
1 TCTATTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT
*
81184 TTCCAAAGTCGTTGAGCC
66 TTCCAAAGTCGTGGAGCC
* *
81202 TCTGA-TTAGAGGAGCCATTTATGTTTCTCAAAGTCGT
1 TCT-ATTTAGAGGAGCAATTTA-CTTTCTCAAAGTCGT
81239 TGAAACTCTG
Statistics
Matches: 111, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
82 31 0.28
83 45 0.41
84 35 0.32
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (83 bp):
TCTATTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT
TTCCAAAGTCGTGGAGCC
Found at i:81477 original size:11 final size:12
Alignment explanation
Indices: 81444--81506 Score: 69
Period size: 11 Copynumber: 5.4 Consensus size: 12
81434 GGTAAGCCCA
*
81444 ATTTTGTTTTAT
1 ATTTTATTTTAT
*
81456 ATTTT-TGTTAT
1 ATTTTATTTTAT
81467 -TTTTATTTTAT
1 ATTTTATTTTAT
81478 -TTTTATTTTAT
1 ATTTTATTTTAT
*
81489 ATTTTATGTATAT
1 ATTTTAT-TTTAT
81502 ATTTT
1 ATTTT
81507 CCTTTATATC
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
10 4 0.09
11 21 0.47
12 11 0.24
13 9 0.20
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.75
Consensus pattern (12 bp):
ATTTTATTTTAT
Found at i:81506 original size:25 final size:24
Alignment explanation
Indices: 81453--81539 Score: 63
Period size: 25 Copynumber: 3.6 Consensus size: 24
81443 AATTTTGTTT
* *
81453 TATATTTTTGTTAT-TTTTAT-TT
1 TATATTTTTTTTATATTTTATGTA
81475 TAT-TTTTATTTTATATTTTATGTA
1 TATATTTT-TTTTATATTTTATGTA
* **
81499 TATATTTTCCTTTATATCCTATGTA
1 TATATTTT-TTTTATATTTTATGTA
*
81524 TTTATTATTTATTTAT
1 TATATT-TTT-TTTAT
81540 TATTACTATT
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
21 4 0.08
22 8 0.16
23 6 0.12
24 4 0.08
25 22 0.43
26 7 0.14
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.69
Consensus pattern (24 bp):
TATATTTTTTTTATATTTTATGTA
Found at i:82617 original size:6 final size:6
Alignment explanation
Indices: 82596--82662 Score: 52
Period size: 6 Copynumber: 11.7 Consensus size: 6
82586 TTTAATGTTC
* * * *
82596 TTTTTA TCTTTA -TTTTA TTTTTA TTTTT- GTTTTA GTTTT- GTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
82641 TTTATT- TATTTA TTTTTA TTTT
1 TTT-TTA TTTTTA TTTTTA TTTT
82663 GTTTTATTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
5 15 0.30
6 33 0.66
7 2 0.04
ACGTcount: A:0.15, C:0.01, G:0.04, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:82628 original size:11 final size:10
Alignment explanation
Indices: 82604--82670 Score: 57
Period size: 11 Copynumber: 6.6 Consensus size: 10
82594 TCTTTTTATC
82604 TTTATTTTATT
1 TTTATTTT-TT
82615 TTTATTTTTGT
1 TTTATTTTT-T
*
82626 TTTAGTTTTGT
1 TTTA-TTTTTT
*
82637 TTTA--TTTA
1 TTTATTTTTT
*
82645 TTTATTTATT
1 TTTATTTTTT
*
82655 TTTATTTTGT
1 TTTATTTTTT
82665 TTTATT
1 TTTATT
82671 ATTCTATTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
8 6 0.13
10 17 0.38
11 18 0.40
12 4 0.09
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:82639 original size:28 final size:27
Alignment explanation
Indices: 82596--82680 Score: 100
Period size: 28 Copynumber: 3.0 Consensus size: 27
82586 TTTAATGTTC
*
82596 TTTTTATCTTTATTTTATT-TTTATTTT
1 TTTTTAT-TTTGTTTTATTATTTATTTT
*
82623 TGTTTTAGTTTTGTTTTATTTATTTATTTA
1 T-TTTTA-TTTTGTTTTA-TTATTTATTTT
82653 TTTTTATTTTGTTTTATTATTCTATTTT
1 TTTTTATTTTGTTTTATTATT-TATTTT
82681 CTTTAAATAA
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
27 6 0.12
28 28 0.56
29 8 0.16
30 8 0.16
ACGTcount: A:0.15, C:0.02, G:0.05, T:0.78
Consensus pattern (27 bp):
TTTTTATTTTGTTTTATTATTTATTTT
Found at i:82908 original size:59 final size:57
Alignment explanation
Indices: 82707--83032 Score: 463
Period size: 59 Copynumber: 5.6 Consensus size: 57
82697 AAATATATAT
* *
82707 ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAA
1 ATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCAAAAAAA
*
82764 ATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAA
1 ATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTC-AAAAAAA
* *
82822 ATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCAAAAAAA
1 AT-TTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAGTTTCAAAAAAA
* *
82882 CATTTTTTGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAGTTCTCAAAAAAT
1 -ATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAGTT-TCAAAAAAA
* * ** *
82942 ATTTTTGGGGAAAAGTTAAAAGTATCAATTTTCCTCGAAATTAAAGTTTCAAAAAAA
1 ATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCAAAAAAA
82999 ATATTTTTGGGAAAAAGTTGAAAGTATCAATTTT
1 AT-TTTTTGGG-AAAAGTTGAAAGTATCAATTTT
83033 TCCTGCACAA
Statistics
Matches: 243, Mismatches: 18, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
57 58 0.24
58 22 0.09
59 101 0.42
60 53 0.22
61 9 0.04
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.35
Consensus pattern (57 bp):
ATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCAAAAAAA
Found at i:83869 original size:13 final size:14
Alignment explanation
Indices: 83848--83878 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
83838 ATATAAATGT
83848 TTAATTTTTAAATA
1 TTAATTTTTAAATA
83862 TTAA-TTTTAAATA
1 TTAATTTTTAAATA
83875 TTAA
1 TTAA
83879 AACTAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 13 0.76
14 4 0.24
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTAATTTTTAAATA
Found at i:84002 original size:13 final size:13
Alignment explanation
Indices: 83986--84010 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83976 AATACAAATA
83986 AATCTAATTATTT
1 AATCTAATTATTT
83999 AATCTAATTATT
1 AATCTAATTATT
84011 AATAAAGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
AATCTAATTATTT
Found at i:84487 original size:11 final size:10
Alignment explanation
Indices: 84467--84537 Score: 55
Period size: 11 Copynumber: 7.3 Consensus size: 10
84457 TTATAAATTA
84467 TAATTATAAT
1 TAATTATAAT
84477 TAATATATAAT
1 TAAT-TATAAT
*
84488 TTATTA-ATAT
1 TAATTATA-AT
84498 TAA-TATAAT
1 TAATTATAAT
84507 T-ATTA-ACAT
1 TAATTATA-AT
84516 TAA--ATAAT
1 TAATTATAAT
84524 TATATTATAAT
1 TA-ATTATAAT
84535 TAA
1 TAA
84538 GTTAAGTTAT
Statistics
Matches: 49, Mismatches: 2, Indels: 20
0.69 0.03 0.28
Matches are distributed among these distances:
8 7 0.14
9 13 0.27
10 13 0.27
11 16 0.33
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (10 bp):
TAATTATAAT
Found at i:84493 original size:15 final size:17
Alignment explanation
Indices: 84429--84508 Score: 71
Period size: 16 Copynumber: 4.9 Consensus size: 17
84419 TAAGGAAATT
* *
84429 TATATTATTATAATATAG
1 TATATAATTATAAT-TAA
* * *
84447 TATGTAATTATTATAAA
1 TATATAATTATAATTAA
84464 T-TATAATTATAATTAA
1 TATATAATTATAATTAA
84480 TATATAATT-T-ATTAA
1 TATATAATTATAATTAA
84495 TAT-TAA-TATAATTA
1 TATATAATTATAATTA
84509 TTAACATTAA
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
13 1 0.02
14 4 0.08
15 12 0.24
16 14 0.27
17 9 0.18
18 11 0.22
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
TATATAATTATAATTAA
Found at i:84537 original size:19 final size:19
Alignment explanation
Indices: 84481--84530 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
84471 TATAATTAAT
*
84481 ATATAATTTATTAATATTA
1 ATATAATTTATTAACATTA
84500 ATATAA-TTATTAACATTA
1 ATATAATTTATTAACATTA
84518 A-ATAATTATATTA
1 ATATAATT-TATTA
84531 TAATTAAGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 4 0.14
18 13 0.46
19 11 0.39
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (19 bp):
ATATAATTTATTAACATTA
Found at i:84598 original size:19 final size:20
Alignment explanation
Indices: 84571--84608 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
84561 AATATCTGCA
84571 TCAAGTTA-TTATATATTTAT
1 TCAAGTTATTTATA-ATTTAT
84591 TCAA-TTATTTATAATTTA
1 TCAAGTTATTTATAATTTA
84609 ATATTTGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (20 bp):
TCAAGTTATTTATAATTTAT
Found at i:84626 original size:22 final size:22
Alignment explanation
Indices: 84601--84646 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
84591 TCAATTATTT
*
84601 ATAATTTAATATTTGAA-ATTAA
1 ATAA-TTAACATTTGAATATTAA
84623 ATAATTAACATTTGAATATTAA
1 ATAATTAACATTTGAATATTAA
84645 AT
1 AT
84647 TGATATTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.43
Consensus pattern (22 bp):
ATAATTAACATTTGAATATTAA
Found at i:85074 original size:11 final size:12
Alignment explanation
Indices: 85039--85078 Score: 55
Period size: 13 Copynumber: 3.3 Consensus size: 12
85029 TATATTATAG
*
85039 TATTATAATAAT
1 TATTATGATAAT
85051 ATATTATGATAAT
1 -TATTATGATAAT
85064 TATTA-GATAAT
1 TATTATGATAAT
85075 TATT
1 TATT
85079 CTAATAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 10 0.38
12 5 0.19
13 11 0.42
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (12 bp):
TATTATGATAAT
Found at i:86151 original size:30 final size:30
Alignment explanation
Indices: 86115--86172 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
86105 ATATTATAAG
* * *
86115 ATAATATATTTAATATTATATTAAATAAAA
1 ATAATATAATGAATATTATAATAAATAAAA
*
86145 ATAATATAATGATTATTATAATAAATAA
1 ATAATATAATGAATATTATAATAAATAA
86173 TATTAAATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (30 bp):
ATAATATAATGAATATTATAATAAATAAAA
Found at i:86202 original size:33 final size:34
Alignment explanation
Indices: 86143--86207 Score: 105
Period size: 33 Copynumber: 1.9 Consensus size: 34
86133 TATTAAATAA
86143 AAATAATATAATGATTATTATAATAAATAATATT
1 AAATAATATAATGATTATTATAATAAATAATATT
* *
86177 AAATAATATTAT-ATTGTTATAATAAATAATA
1 AAATAATATAATGATTATTATAATAAATAATA
86208 ACAATAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 18 0.62
34 11 0.38
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (34 bp):
AAATAATATAATGATTATTATAATAAATAATATT
Found at i:86218 original size:33 final size:32
Alignment explanation
Indices: 86110--86221 Score: 104
Period size: 33 Copynumber: 3.5 Consensus size: 32
86100 ATAAAATATT
* * * * *
86110 ATAAGATAATATATTTAATATTATATTAAAT-
1 ATAAAATAATATAATGATTATTATAATAAATA
86141 A-AAAATAATATAATGATTATTATAATAAATA
1 ATAAAATAATATAATGATTATTATAATAAATA
* *
86172 ATATTAAATAATATTAT-ATTGTTATAATAAATA
1 ATA--AAATAATATAATGATTATTATAATAAATA
86205 ATAACAATAAATATAAT
1 ATAA-AAT-AATATAAT
86222 TATAATTGTT
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
30 24 0.36
31 3 0.04
32 4 0.06
33 25 0.37
34 11 0.16
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.40
Consensus pattern (32 bp):
ATAAAATAATATAATGATTATTATAATAAATA
Found at i:86478 original size:21 final size:21
Alignment explanation
Indices: 86437--86485 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
86427 CCAAATGACT
* *
86437 ATAATAATTAATTTATCATTA
1 ATAATTATTAATTAATCATTA
86458 ATAATTATTAATTAAAT-ATTA
1 ATAATTATTAATT-AATCATTA
*
86479 AAAATTA
1 ATAATTA
86486 GTACTTTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 22 0.92
22 2 0.08
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (21 bp):
ATAATTATTAATTAATCATTA
Found at i:86877 original size:35 final size:35
Alignment explanation
Indices: 86838--86920 Score: 91
Period size: 35 Copynumber: 2.4 Consensus size: 35
86828 ATTTTTTTAA
*
86838 TATAATAATAAATT-ATTATATAG-T-TTATTAATTAT
1 TATAA-AAT-AATTAATT-TATAGTTATTATTAATAAT
86873 TATAAAATAATTAATTTATAGTTATTATTAATAAT
1 TATAAAATAATTAATTTATAGTTATTATTAATAAT
**
86908 TATATTATAATTA
1 TATAAAATAATTA
86921 GTTGTAACTA
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
33 9 0.21
34 7 0.17
35 26 0.62
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (35 bp):
TATAAAATAATTAATTTATAGTTATTATTAATAAT
Found at i:87010 original size:16 final size:15
Alignment explanation
Indices: 86989--87020 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
86979 TAATAGAAGT
86989 TATTATAAATTAATAA
1 TATTATAAA-TAATAA
87005 TATTATAAATAATAA
1 TATTATAAATAATAA
87020 T
1 T
87021 GTTAATCAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TATTATAAATAATAA
Found at i:87286 original size:15 final size:15
Alignment explanation
Indices: 87242--87293 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
87232 TAACAAATCA
*
87242 ATAATATTATTAATT
1 ATAATATTAATAATT
*
87257 -TAAT-TGTTATAAATT
1 ATAATAT-TAAT-AATT
87272 ATAATATTAATAATT
1 ATAATATTAATAATT
87287 ATAATAT
1 ATAATAT
87294 ATAGACAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
13 1 0.03
14 6 0.20
15 15 0.50
16 7 0.23
17 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
ATAATATTAATAATT
Found at i:87980 original size:181 final size:177
Alignment explanation
Indices: 87400--88004 Score: 544
Period size: 181 Copynumber: 3.4 Consensus size: 177
87390 ATTATAAATT
* * * * * * *
87400 AATAGTTAAGACTATTAGAATAATTATCTATTTCAAATCATTAT-ATCCTTTTGTTTAGTCATAA
1 AATAGTTATGACTATTTGAACAATTATCTAATTAAAATCGTTATGA--ATTTTGTTTAGTCATAA
* * * * *
87464 AACAATTATTTCAGTTCATATAAGCTTATTTGGAATAAAATAATACTAATTTATTAACATTCAAA
64 AACAATTGTTTCAGTTCATATAAGCTTA-TTCGAAAAAAATAATACTAATTTATTAACTTTTAAA
* * * **
87529 AAATT-A-AAGCAAGAGATTTAAAAACTAAAGCTATTTTCAAAGCAGTTTT
128 AAATTAATAAGCAAGAGATTTAAAAACTAAATCTGTTTTCGAA-CAGTTCA
* * *
87578 AATAGTTATGACTATTTGAACAAATAT-TAATCACAAATCGTTATG-ATCTTTGTTTTGTCATAA
1 AATAGTTATGACTATTTGAACAATTATCTAATTA-AAATCGTTATGAAT-TTTGTTTAGTCATAA
* * *
87641 AACAATTGTTTTTTTTA-TATCATATAAGCTTATTCAAATAAAAATAATACTAATTTAATAA-TA
64 AACAATTG----TTTCAGT-TCATATAAGCTTATTCGAA-AAAAATAATACTAATTTATTAACT-
* * * *
87704 TTTTAAAAATTAATAAGTAAGAGATTTAAAAA--AAATGTGTTTGTCGATCAGTTCA
122 TTTAAAAAATTAATAAGCAAGAGATTTAAAAACTAAATCTGTTT-TCGAACAGTTCA
* * * * * * * *
87759 AATAGTTAAGATTATTAGAATAATTATCTATTTCAAATCGTTTTGACATTTTGTTTAATCATAAA
1 AATAGTTATGACTATTTGAACAATTATCTAATTAAAATCGTTATGA-ATTTTGTTTAGTCATAAA
* * * *
87824 ATAATTGTTTCAGTTCATACAAGCTTATTCGAAAAAAATAATACTAATTTATTAACTTTTGAAAG
65 ACAATTGTTTCAGTTCATATAAGCTTATTCGAAAAAAATAATACTAATTTATTAACTTTTAAAAA
* * * *
87889 ATTAATAAGCAGGATATTTGAAAAACTAAATTTGTTTACCGAACAAGTTCA
130 ATTAATAAGCAAGAGATTT-AAAAACTAAATCTGTTT-TCGAAC-AGTTCA
* * * ***
87940 AATAGTTATTACTATTTGAACAATTATCTAGTTAAAATCGTTGTGAATTTCAATTAGTCATAAAA
1 AATAGTTATGACTATTTGAACAATTATCTAATTAAAATCGTTATGAATTTTGTTTAGTCATAAAA
88005 TATTTTAAAA
Statistics
Matches: 341, Mismatches: 64, Indels: 42
0.76 0.14 0.09
Matches are distributed among these distances:
176 1 0.00
177 67 0.20
178 59 0.17
179 1 0.00
180 33 0.10
181 134 0.39
182 27 0.08
183 19 0.06
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.39
Consensus pattern (177 bp):
AATAGTTATGACTATTTGAACAATTATCTAATTAAAATCGTTATGAATTTTGTTTAGTCATAAAA
CAATTGTTTCAGTTCATATAAGCTTATTCGAAAAAAATAATACTAATTTATTAACTTTTAAAAAA
TTAATAAGCAAGAGATTTAAAAACTAAATCTGTTTTCGAACAGTTCA
Found at i:88166 original size:22 final size:22
Alignment explanation
Indices: 88126--88168 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
88116 AATTATTGTA
*
88126 ATTAATTAATATTAGTTAATTT
1 ATTAATTAACATTAGTTAATTT
88148 ATTAATTAACATTTA-TTAATT
1 ATTAATTAACA-TTAGTTAATT
88169 AGTAAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
ATTAATTAACATTAGTTAATTT
Found at i:88196 original size:18 final size:16
Alignment explanation
Indices: 88173--88226 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 16
88163 TTAATTAGTA
88173 AATTAATAATATATAATT
1 AATTAATAAT-T-TAATT
88191 AATTAAT-ATTTAATTT
1 AATTAATAATTTAA-TT
88207 AATATAATAATTTTAATT
1 AAT-TAATAA-TTTAATT
88225 AA
1 AA
88227 ACAAAATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
15 3 0.09
16 6 0.19
17 6 0.19
18 12 0.38
19 5 0.16
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTAATAATTTAATT
Found at i:88209 original size:30 final size:31
Alignment explanation
Indices: 88124--88218 Score: 85
Period size: 30 Copynumber: 3.2 Consensus size: 31
88114 TTAATTATTG
*
88124 TAATTAATTAATATTAGTTAATTTATTAAT-TA
1 TAATTAATTAATA-TA-TTAATTTAATAATATA
* * *
88156 -ACATTTATTAAT-TAGTAAATTAATAATATA
1 TA-ATTAATTAATATATTAATTTAATAATATA
88186 TAATTAATTAATAT-TTAATTTAAT-ATA-A
1 TAATTAATTAATATATTAATTTAATAATATA
88214 TAATT
1 TAATT
88219 TTAATTAAAC
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
28 6 0.12
29 13 0.25
30 21 0.40
31 3 0.06
32 9 0.17
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (31 bp):
TAATTAATTAATATATTAATTTAATAATATA
Found at i:88239 original size:18 final size:18
Alignment explanation
Indices: 88198--88241 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
88188 ATTAATTAAT
* * *
88198 ATTTAATTTAATATAATA
1 ATTTAATTAAACAAAATA
88216 ATTTTAATTAAACAAAATA
1 A-TTTAATTAAACAAAATA
88235 ATTTAAT
1 ATTTAAT
88242 AAATTAGTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
ATTTAATTAAACAAAATA
Found at i:88504 original size:23 final size:22
Alignment explanation
Indices: 88459--88513 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
88449 AAATATTTAA
*
88459 TATAATTAATAAATTATTTATT
1 TATAATTAATAAATTATTAATT
88481 TATAATTAAGTATAA-TATTAATT
1 TATAATTAA-TA-AATTATTAATT
88504 TATAA-TAATA
1 TATAATTAATA
88514 CAACTTGTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 2 0.07
22 12 0.40
23 14 0.47
24 2 0.07
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
TATAATTAATAAATTATTAATT
Found at i:88666 original size:15 final size:17
Alignment explanation
Indices: 88636--88667 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
88626 ATGTGTAGTC
88636 TATTGAATCAAATAATT
1 TATTGAATCAAATAATT
88653 TATT-AATC-AATAATT
1 TATTGAATCAAATAATT
88668 AAAATATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 4 0.27
17 4 0.27
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (17 bp):
TATTGAATCAAATAATT
Found at i:88797 original size:13 final size:14
Alignment explanation
Indices: 88773--88816 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
88763 ATAATAAAAA
88773 TTAAATATTTTAAT
1 TTAAATATTTTAAT
*
88787 TTAAATATTTAAATT
1 TTAAATATTTTAA-T
*
88802 TTAAATTTTTTAAT
1 TTAAATATTTTAAT
88816 T
1 T
88817 ATTCCCATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 14 0.54
15 12 0.46
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTAAATATTTTAAT
Found at i:88980 original size:21 final size:21
Alignment explanation
Indices: 88954--89042 Score: 71
Period size: 21 Copynumber: 4.2 Consensus size: 21
88944 CTTATAATTA
88954 AATTATATAATATAATTTAAT
1 AATTATATAATATAATTTAAT
*
88975 AATTATAT--TATGAAGTTTTAT
1 AATTATATAATAT-AA-TTTAAT
*
88996 AATATATTTATATATAA--TAAT
1 AAT-TATATA-ATATAATTTAAT
89017 AATTATATAAT-TAATTATAAT
1 AATTATATAATATAATT-TAAT
*
89038 TATTA
1 AATTA
89043 AATGATTGTA
Statistics
Matches: 54, Mismatches: 5, Indels: 18
0.70 0.06 0.23
Matches are distributed among these distances:
18 3 0.06
19 5 0.09
20 7 0.13
21 30 0.56
22 4 0.07
24 2 0.04
25 3 0.06
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
AATTATATAATATAATTTAAT
Found at i:89173 original size:4 final size:4
Alignment explanation
Indices: 89127--89154 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
89117 CATTTAAATT
89127 TTAA TTAA TTAA TTAA TTAA TTAA TTAA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTAA
89155 AATATAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
TTAA
Found at i:89176 original size:12 final size:12
Alignment explanation
Indices: 89120--89179 Score: 50
Period size: 12 Copynumber: 4.8 Consensus size: 12
89110 TAATAAACAT
89120 TTAAAT-TTTAA
1 TTAAATATTTAA
* *
89131 TTAATTAATTAA
1 TTAAATATTTAA
* *
89143 TTAATTAATTAAAA
1 TTAAAT-ATT-TAA
89157 TATAAATATTTAA
1 T-TAAATATTTAA
89170 TTAAATATTT
1 TTAAATATTT
89180 TTAATAATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
11 5 0.13
12 19 0.49
13 5 0.13
14 6 0.15
15 4 0.10
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
TTAAATATTTAA
Found at i:89215 original size:25 final size:24
Alignment explanation
Indices: 89174--89223 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
89164 ATTTAATTAA
89174 ATATTTTTAATAATTATTATTAAAT
1 ATATTTTTAATAATTA-TATTAAAT
* * *
89199 ATATTTTTACTAGTTATATTTAAT
1 ATATTTTTAATAATTATATTAAAT
89223 A
1 A
89224 CTATGGTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (24 bp):
ATATTTTTAATAATTATATTAAAT
Found at i:89640 original size:27 final size:28
Alignment explanation
Indices: 89592--89657 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 28
89582 TATTTAAATT
89592 ATTAAT-T-TTATTATAAATT-TATTTG
1 ATTAATATATTATTATAAATTATATTTG
*
89617 TTTAATATATTATTATATAATTATATTTG
1 ATTAATATATTATTATA-AATTATATTTG
89646 ATTAATATATTA
1 ATTAATATATTA
89658 AAATATTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
25 5 0.14
26 1 0.03
27 8 0.23
28 4 0.11
29 17 0.49
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (28 bp):
ATTAATATATTATTATAAATTATATTTG
Found at i:89663 original size:29 final size:28
Alignment explanation
Indices: 89607--89663 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
89597 TTTTATTATA
* **
89607 AATTTATTTGTTTAATATATTATTATAT
1 AATTTATTTGATTAATATATTAAAATAT
89635 AATTATATTTGATTAATATATTAAAATAT
1 AATT-TATTTGATTAATATATTAAAATAT
89664 TTTTCTTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (28 bp):
AATTTATTTGATTAATATATTAAAATAT
Found at i:90015 original size:17 final size:17
Alignment explanation
Indices: 89993--90027 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
89983 AATGATAAAA
89993 TATTAATTAAT-TAATAT
1 TATTAATT-ATCTAATAT
90010 TATTAATTATCTAATAT
1 TATTAATTATCTAATAT
90027 T
1 T
90028 TCATAAATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
TATTAATTATCTAATAT
Found at i:90175 original size:18 final size:18
Alignment explanation
Indices: 90143--90224 Score: 73
Period size: 18 Copynumber: 4.5 Consensus size: 18
90133 GGTCACTTGT
90143 TAAT-TTATCATTAATTTTA
1 TAATATTAT-ATTAA-TTTA
90162 TAATATTA-ATTAA-TTA
1 TAATATTATATTAATTTA
90178 TAATAATTATATTAATTTA
1 TAAT-ATTATATTAATTTA
* *
90197 TATTATTATA-AAATATTA
1 TAATATTATATTAAT-TTA
90215 GTAATATTAT
1 -TAATATTAT
90225 TATCACTATT
Statistics
Matches: 54, Mismatches: 3, Indels: 12
0.78 0.04 0.17
Matches are distributed among these distances:
16 7 0.13
17 7 0.13
18 19 0.35
19 18 0.33
20 3 0.06
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (18 bp):
TAATATTATATTAATTTA
Found at i:90281 original size:45 final size:46
Alignment explanation
Indices: 90180--90292 Score: 108
Period size: 45 Copynumber: 2.5 Consensus size: 46
90170 ATTAATTATA
* *
90180 ATAATTATATT-AATTTATATTATTATAAAATATTAGTAATATTATT
1 ATAATTAT-TTAAATTTATATTATTATAAAATATTAGTAATACTATC
* * *
90226 ATCACTATTTAAATTT-T-TTATTATTATAATAGTTA-TAATACTATC
1 ATAATTATTTAAATTTATATTATTA-TAAAATA-TTAGTAATACTATC
* *
90271 ATAATTATTTAAGTATATATTA
1 ATAATTATTTAAATTTATATTA
90293 ATAGTTAAGG
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
44 6 0.11
45 29 0.55
46 15 0.28
47 3 0.06
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.51
Consensus pattern (46 bp):
ATAATTATTTAAATTTATATTATTATAAAATATTAGTAATACTATC
Found at i:90424 original size:26 final size:26
Alignment explanation
Indices: 90367--90425 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
90357 TAAAAAAATC
*
90367 ATATTGATTTAATATATAAATAATTT
1 ATATTAATTTAATATATAAATAATTT
*
90393 AAATTAATTTAATAT-TAATTATAATTT
1 ATATTAATTTAATATATAA--ATAATTT
90420 -TATTAA
1 ATATTAA
90426 CCTAATTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
25 3 0.11
26 18 0.64
27 7 0.25
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (26 bp):
ATATTAATTTAATATATAAATAATTT
Found at i:90863 original size:22 final size:23
Alignment explanation
Indices: 90806--90859 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
90796 TAATTGAAAT
90806 TTAATATTAATAATATTTATGATAA
1 TTAATA-T-ATAATATTTATGATAA
*
90831 TCAAT-TATAATATTT-TG-TAA
1 TTAATATATAATATTTATGATAA
90851 TTAATATAT
1 TTAATATAT
90860 TAATCATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
20 7 0.27
21 5 0.19
22 9 0.35
23 1 0.04
25 4 0.15
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (23 bp):
TTAATATATAATATTTATGATAA
Found at i:91427 original size:21 final size:22
Alignment explanation
Indices: 91393--91439 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
91383 TATTTAATTT
91393 TATTATATATAATTCTTTAAAG
1 TATTATATATAATTCTTTAAAG
* *
91415 TATTA-ATTTAATTCTTTAAAT
1 TATTATATATAATTCTTTAAAG
91436 TATT
1 TATT
91440 TTAAATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.55
Consensus pattern (22 bp):
TATTATATATAATTCTTTAAAG
Found at i:91444 original size:10 final size:10
Alignment explanation
Indices: 91416--91470 Score: 51
Period size: 10 Copynumber: 5.7 Consensus size: 10
91406 TCTTTAAAGT
91416 ATTAATTT-A
1 ATTAATTTAA
*
91425 ATT-CTTTAA
1 ATTAATTTAA
*
91434 ATTATTTTAA
1 ATTAATTTAA
*
91444 ATTAATTAAA
1 ATTAATTTAA
*
91454 ATTAATTGAA
1 ATTAATTTAA
*
91464 TTTAATT
1 ATTAATT
91471 AATCATTTTG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
8 3 0.08
9 7 0.18
10 28 0.74
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (10 bp):
ATTAATTTAA
Found at i:92820 original size:30 final size:31
Alignment explanation
Indices: 92776--92835 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
92766 TGATAACAAT
92776 TAAATTTAATAAATTACTTA-TTAAACTTTAA
1 TAAATTTAATAAATTACTTATTTAAA-TTTAA
* *
92807 TAAA-TTAGTAAATTATTTATTTAAATTTA
1 TAAATTTAATAAATTACTTATTTAAATTTA
92836 TCCAAGCAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 17 0.65
31 9 0.35
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (31 bp):
TAAATTTAATAAATTACTTATTTAAATTTAA
Found at i:93130 original size:22 final size:22
Alignment explanation
Indices: 93105--93149 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
93095 TATTTAACTA
* *
93105 ATATATATTAATTATTAGTAAT
1 ATATATAATAATTATTAATAAT
93127 ATATATAATAATTATTAATAAT
1 ATATATAATAATTATTAATAAT
93149 A
1 A
93150 ATTGAGATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
ATATATAATAATTATTAATAAT
Found at i:93925 original size:38 final size:40
Alignment explanation
Indices: 93831--93925 Score: 90
Period size: 38 Copynumber: 2.4 Consensus size: 40
93821 AATAAGAGTT
* *
93831 ATTATTAATTATATAATAATTGAAATAGTTAATATAATTTGA
1 ATTATTTATTAT-T-ATAATTGAAATAGTTAATATAATATGA
* *
93873 ATTA-TTATGGATTATAATT-ATAT-GTTAATAATAATAT-A
1 ATTATTTAT-TATTATAATTGAAATAGTTAAT-ATAATATGA
93911 ATTATTTATTATTAT
1 ATTATTTATTATTAT
93926 TATAATGATA
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
38 16 0.36
39 13 0.29
40 6 0.13
41 4 0.09
42 6 0.13
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.49
Consensus pattern (40 bp):
ATTATTTATTATTATAATTGAAATAGTTAATATAATATGA
Found at i:94319 original size:14 final size:16
Alignment explanation
Indices: 94288--94328 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
94278 TATTAATTAC
*
94288 ATATTAAATATTACTA
1 ATATTAAAAATTACTA
94304 ATA-TAAAAATTA-TA
1 ATATTAAAAATTACTA
94318 ATATTAAAAAT
1 ATATTAAAAAT
94329 AAATTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 5 0.22
15 15 0.65
16 3 0.13
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (16 bp):
ATATTAAAAATTACTA
Found at i:94356 original size:12 final size:11
Alignment explanation
Indices: 94320--94354 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
94310 AAATTATAAT
*
94320 ATTAAAAATAA
1 ATTAAAATTAA
94331 ATTAATAATTAA
1 ATTAA-AATTAA
94343 ATTAAAATTAA
1 ATTAAAATTAA
94354 A
1 A
94355 ATCCTTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 12 0.55
12 10 0.45
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
ATTAAAATTAA
Found at i:94554 original size:19 final size:20
Alignment explanation
Indices: 94518--94559 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
94508 AATATAAAAT
* *
94518 TATTATAATATTAGTAATAA
1 TATTATAATACTAATAATAA
94538 TATT-TAATACTAATAATAA
1 TATTATAATACTAATAATAA
94557 TAT
1 TAT
94560 CATTATTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (20 bp):
TATTATAATACTAATAATAA
Found at i:94640 original size:24 final size:24
Alignment explanation
Indices: 94613--94661 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
94603 GAATATTACC
* *
94613 ATTAGTATTATTATAATTTTTAAA
1 ATTAGTATTAATATAATATTTAAA
* *
94637 ATTATTTTTAATATAATATTTAAA
1 ATTAGTATTAATATAATATTTAAA
94661 A
1 A
94662 ATAATTAGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (24 bp):
ATTAGTATTAATATAATATTTAAA
Found at i:94645 original size:12 final size:12
Alignment explanation
Indices: 94625--94667 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
94615 TAGTATTATT
94625 ATAATTTTTAAA
1 ATAATTTTTAAA
* *
94637 ATTATTTTTAAT
1 ATAATTTTTAAA
*
94649 ATAATATTTAAAA
1 ATAAT-TTTTAAA
94662 ATAATT
1 ATAATT
94668 AGAAAGAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (12 bp):
ATAATTTTTAAA
Found at i:94842 original size:14 final size:12
Alignment explanation
Indices: 94758--94848 Score: 65
Period size: 14 Copynumber: 6.8 Consensus size: 12
94748 AATTTTTATT
94758 TAATTATTACTAA
1 TAATTATTA-TAA
*
94771 TTATTATTTATAA
1 TAATTA-TTATAA
94784 TAATTTATTTATAA
1 TAA-TTA-TTATAA
* *
94798 TATATTAATACTACC
1 TA-ATTATTA-TA-A
94813 TAATTAATTATAA
1 TAATT-ATTATAA
94826 TAATTAGTTACTAA
1 TAATTA-TTA-TAA
94840 TAATTATTA
1 TAATTATTA
94849 AATTATTTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
12 1 0.02
13 23 0.36
14 34 0.53
15 6 0.09
ACGTcount: A:0.44, C:0.05, G:0.01, T:0.49
Consensus pattern (12 bp):
TAATTATTATAA
Found at i:94888 original size:22 final size:19
Alignment explanation
Indices: 94840--94891 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
94830 TAGTTACTAA
*
94840 TAATTATTAAATTATTTAT
1 TAATTATTAATTTATTTAT
*
94859 AAATTATTAATTTATTATATT
1 TAATTATTAATTTATT-TA-T
94880 TAATGTATTAAT
1 TAAT-TATTAAT
94892 CAAATATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 14 0.52
20 2 0.07
21 4 0.15
22 7 0.26
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
TAATTATTAATTTATTTAT
Found at i:94921 original size:23 final size:23
Alignment explanation
Indices: 94895--94947 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
94885 TATTAATCAA
94895 ATATAATT-ATATAA-TATTTCATT
1 ATATAATTAATA-AATTATTT-ATT
94918 ATATAATTAATAAATTATTTATT
1 ATATAATTAATAAATTATTTATT
94941 ATGATAA
1 AT-ATAA
94948 AGTAATTGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
23 15 0.56
24 12 0.44
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (23 bp):
ATATAATTAATAAATTATTTATT
Found at i:95479 original size:35 final size:33
Alignment explanation
Indices: 95415--95483 Score: 86
Period size: 32 Copynumber: 2.0 Consensus size: 33
95405 AATATTATTA
* *
95415 ATTTATTATTACTATTAAATAAGTTAATTAATT
1 ATTTATTATTAATATTAAACAAGTTAATTAATT
95448 ATTT-TTATTAATATTAATACAAGTTCAAATTAATT
1 ATTTATTATTAATATTAA-ACAAGTT--AATTAATT
95483 A
1 A
95484 AATACAATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
32 12 0.39
33 10 0.32
35 9 0.29
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.49
Consensus pattern (33 bp):
ATTTATTATTAATATTAAACAAGTTAATTAATT
Found at i:96174 original size:40 final size:41
Alignment explanation
Indices: 96097--96184 Score: 115
Period size: 43 Copynumber: 2.1 Consensus size: 41
96087 AAGTAAACAG
* * *
96097 GGCTCCTCTAAATAGGGGCCCAACAACTTTTAGAAAAATAAA
1 GGCTCCTCTAAACAGAGGCACAACAACTTTTA-AAAAATAAA
*
96139 TGGCTCCTCTAAACAGAGTCACAACAAC-TTTAAAAAATAAA
1 -GGCTCCTCTAAACAGAGGCACAACAACTTTTAAAAAATAAA
96180 GGCTC
1 GGCTC
96185 ATTGACAATC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
40 5 0.12
41 9 0.22
42 4 0.10
43 23 0.56
ACGTcount: A:0.41, C:0.23, G:0.15, T:0.22
Consensus pattern (41 bp):
GGCTCCTCTAAACAGAGGCACAACAACTTTTAAAAAATAAA
Found at i:96561 original size:43 final size:42
Alignment explanation
Indices: 96438--96580 Score: 110
Period size: 43 Copynumber: 3.3 Consensus size: 42
96428 TTGAATTTCA
* *
96438 GAGATTCATATCCAAAAATTCAAAGCTTCTCATTCGAGTTAAATTTG
1 GAGATTCACATCCAAAAGTTCAAAGCTTCTCATTC-----AAATTTG
* * * *
96485 G-GGTTCACATCTAAAAAGTT-TAAGCTTTTTCATTCAAATTTTG
1 GAGATTCACATC-CAAAAGTTCAAAGC-TTCTCATTCAAA-TTTG
* * *
96528 GAGATTCACATCCAAAAGTTCAAAACTTCTCATTCGAATTCG
1 GAGATTCACATCCAAAAGTTCAAAGCTTCTCATTCAAATTTG
*
96570 AAGATTCACAT
1 GAGATTCACAT
96581 ATGATAAATT
Statistics
Matches: 77, Mismatches: 14, Indels: 15
0.73 0.13 0.14
Matches are distributed among these distances:
42 16 0.21
43 22 0.29
44 12 0.16
46 12 0.16
47 15 0.19
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (42 bp):
GAGATTCACATCCAAAAGTTCAAAGCTTCTCATTCAAATTTG
Found at i:96645 original size:21 final size:21
Alignment explanation
Indices: 96607--96731 Score: 151
Period size: 21 Copynumber: 5.9 Consensus size: 21
96597 TTTTCACATA
* *
96607 TCAAAAATTTTCATTTGAAAC
1 TCAAAGATTCTCATTTGAAAC
* *
96628 TTAAAGATTCTTATTTGAAAC
1 TCAAAGATTCTCATTTGAAAC
*
96649 TCAAAAATTCTCATTTGAAAAC
1 TCAAAGATTCTCATTTG-AAAC
*
96671 TCAAAGATTCTCATTTGAAGAT
1 TCAAAGATTCTCATTTGAA-AC
* *
96693 TCAAAGATTTTCATTTAAAAC
1 TCAAAGATTCTCATTTGAAAC
*
96714 TCAAAAATTCTCATTTGA
1 TCAAAGATTCTCATTTGA
96732 GGGTTCACAA
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
21 49 0.56
22 38 0.44
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (21 bp):
TCAAAGATTCTCATTTGAAAC
Found at i:96687 original size:43 final size:44
Alignment explanation
Indices: 96607--96731 Score: 175
Period size: 43 Copynumber: 2.9 Consensus size: 44
96597 TTTTCACATA
* *
96607 TCAAAAATTTTCATTTG-AAACTTAAAGATTCTTATTTGAA-AC
1 TCAAAAATTTTCATTTGAAAACTCAAAGATTCTCATTTGAAGAC
* *
96649 TCAAAAATTCTCATTTGAAAACTCAAAGATTCTCATTTGAAGAT
1 TCAAAAATTTTCATTTGAAAACTCAAAGATTCTCATTTGAAGAC
* *
96693 TCAAAGATTTTCATTT-AAAACTCAAAAATTCTCATTTGA
1 TCAAAAATTTTCATTTGAAAACTCAAAGATTCTCATTTGA
96732 GGGTTCACAA
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
42 16 0.22
43 43 0.58
44 15 0.20
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (44 bp):
TCAAAAATTTTCATTTGAAAACTCAAAGATTCTCATTTGAAGAC
Found at i:97254 original size:63 final size:63
Alignment explanation
Indices: 97177--97565 Score: 422
Period size: 63 Copynumber: 6.2 Consensus size: 63
97167 TAGCAAGTTC
* * * *
97177 AAAACAACTTTCATCCTTTATCATTTGGTCACCACTCATAGGCTTCTTAGCACTAGTCATTTT
1 AAAACAAATTTTATCCTTTATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTTT
* * * * * * * * *
97240 AAAACAAATTTCATCCTTCATCATTTGGTCACCACTTACAGGCTTTTTAGCACCAGCCACTTC
1 AAAACAAATTTTATCCTTTATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTTT
* * * *
97303 AAAACAAATTTTGT-CTTCTATCACTTGGTCACCACTCATAAGCTTCTCAGCACTAGCCATTCT
1 AAAACAAATTTTATCCTT-TATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTTT
* ** * * * **
97366 AGAACAAATTTTATTTTTTATCACTTGATCACCACTCATAGGTTTCTAAGCACTAGCCATTCC
1 AAAACAAATTTTATCCTTTATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTTT
* * * * * * *
97429 AGAACAAATTTTATCCTTCATCATTTGATCACCACTCACAGGCTTCTTAGCATTAG-CAGTTT
1 AAAACAAATTTTATCCTTTATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTTT
* * **
97491 CAAACAAATTTTATCTTTTATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTCC
1 AAAACAAATTTTATCCTTTATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTTT
*
97554 AGAACAAATTTT
1 AAAACAAATTTT
97566 GTCCATTACT
Statistics
Matches: 269, Mismatches: 54, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
62 54 0.20
63 213 0.79
64 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.35
Consensus pattern (63 bp):
AAAACAAATTTTATCCTTTATCACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTTT
Found at i:97355 original size:126 final size:125
Alignment explanation
Indices: 97195--97568 Score: 475
Period size: 126 Copynumber: 3.0 Consensus size: 125
97185 TTTCATCCTT
* * *
97195 TATCATTTGGTCACCACTCATAGGCTTCTTAGCACTAGTCATTTTAAAACAAATTTCATCCTTCA
1 TATCATTTGGTCACCACTCATAGGCTTCTTAGCACTAG-CATTTTAAAACAAATTTTATCTTTTA
* * * * *
97260 TCATTTGGTCACCACTTACAGGCTTTTTAGCACCAGCCACTT-CAAAACAAATTTTGTCTTC
65 TCACTTGGTCACCACTCATAGGCTTTTTAGCACTAGCCA-TTCCAGAACAAATTTTGTCTTC
* * * * * *
97321 TATCACTTGGTCACCACTCATAAGCTTCTCAGCACTAGCCATTCTAGAACAAATTTTATTTTTTA
1 TATCATTTGGTCACCACTCATAGGCTTCTTAGCACTAG-CATTTTAAAACAAATTTTATCTTTTA
* * *
97386 TCACTTGATCACCACTCATAGG-TTTCTAAGCACTAGCCATTCCAGAACAAATTTTATCCTTC
65 TCACTTGGTCACCACTCATAGGCTTT-TTAGCACTAGCCATTCCAGAACAAATTTTGT-CTTC
* * * * *
97448 -ATCATTTGATCACCACTCACAGGCTTCTTAGCATTAGCAGTTTCAAACAAATTTTATCTTTTAT
1 TATCATTTGGTCACCACTCATAGGCTTCTTAGCACTAGCATTTTAAAACAAATTTTATCTTTTAT
*
97512 CACTTGGTCACCACTCATAGGCTTCTTAGCACTAGCCATTCCAGAACAAATTTTGTC
66 CACTTGGTCACCACTCATAGGCTTTTTAGCACTAGCCATTCCAGAACAAATTTTGTC
97569 CATTACTCCA
Statistics
Matches: 211, Mismatches: 33, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
124 1 0.00
125 76 0.36
126 130 0.62
127 4 0.02
ACGTcount: A:0.28, C:0.26, G:0.10, T:0.35
Consensus pattern (125 bp):
TATCATTTGGTCACCACTCATAGGCTTCTTAGCACTAGCATTTTAAAACAAATTTTATCTTTTAT
CACTTGGTCACCACTCATAGGCTTTTTAGCACTAGCCATTCCAGAACAAATTTTGTCTTC
Found at i:97453 original size:189 final size:187
Alignment explanation
Indices: 97153--97565 Score: 540
Period size: 189 Copynumber: 2.2 Consensus size: 187
97143 CATTATTCAC
* * * * * * *
97153 AAGCTTCTCAGCAGTAGCAAGTTCAAAACAACTTTCATCCTTTATCATTTGGTCACCACTCATAG
1 AAGCTTCTCAGCACTAGCCA-TTCAGAACAAATTTTATCCTTTATCACTTGATCACCACTCATAG
* * ** * *
97218 GCTTCTTAGCACTAGTCATTTTAAAACAAATTTCATCCTTCATCATTTGGTCACCACTTACAGGC
65 GCTTCTAAGCACTAGCCATTCCAAAACAAATTTCATCCTTCATCATTTGATCACCACTCACAGGC
* *
97283 TTTTTAGCACCAGCCA-CTTCAAAACAAATTTTGTCTTCTATCACTTGGTCACCACTCAT
130 TTCTTAGCACCAG-CAGCTTC-AAACAAATTTTATCTTCTATCACTTGGTCACCACTCAT
**
97342 AAGCTTCTCAGCACTAGCCATTCTAGAACAAATTTTATTTTTTATCACTTGATCACCACTCATAG
1 AAGCTTCTCAGCACTAGCCATTC-AGAACAAATTTTATCCTTTATCACTTGATCACCACTCATAG
* * *
97407 GTTTCTAAGCACTAGCCATTCCAGAACAAATTTTATCCTTCATCATTTGATCACCACTCACAGGC
65 GCTTCTAAGCACTAGCCATTCCAAAACAAATTTCATCCTTCATCATTTGATCACCACTCACAGGC
** * *
97472 TTCTTAGCATTAGCAGTTTCAAACAAATTTTATCTTTTATCACTTGGTCACCACTCAT
130 TTCTTAGCACCAGCAGCTTCAAACAAATTTTATCTTCTATCACTTGGTCACCACTCAT
* *
97530 AGGCTTCTTAGCACTAGCCATTCCAGAACAAATTTT
1 AAGCTTCTCAGCACTAGCCATT-CAGAACAAATTTT
97566 GTCCATTACT
Statistics
Matches: 195, Mismatches: 26, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
188 73 0.37
189 122 0.63
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.34
Consensus pattern (187 bp):
AAGCTTCTCAGCACTAGCCATTCAGAACAAATTTTATCCTTTATCACTTGATCACCACTCATAGG
CTTCTAAGCACTAGCCATTCCAAAACAAATTTCATCCTTCATCATTTGATCACCACTCACAGGCT
TCTTAGCACCAGCAGCTTCAAACAAATTTTATCTTCTATCACTTGGTCACCACTCAT
Found at i:98281 original size:9 final size:8
Alignment explanation
Indices: 98267--98329 Score: 58
Period size: 9 Copynumber: 7.6 Consensus size: 8
98257 TCTTTCATTC
98267 TTTCATTTT
1 TTTC-TTTT
98276 TTTCATTTT
1 TTTC-TTTT
98285 TTTC-TTT
1 TTTCTTTT
98292 TTTCTTTT
1 TTTCTTTT
**
98300 AATC-TTT
1 TTTCTTTT
98307 TTTCTTTTT
1 TTTC-TTTT
98316 TTTCTTTT
1 TTTCTTTT
98324 TCTTCT
1 T-TTCT
98330 CATTTTTCAT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
7 12 0.26
8 10 0.22
9 24 0.52
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTCTTTT
Found at i:98292 original size:7 final size:7
Alignment explanation
Indices: 98282--98327 Score: 56
Period size: 7 Copynumber: 6.3 Consensus size: 7
98272 TTTTTTTCAT
98282 TTTTTTC
1 TTTTTTC
98289 TTTTTTC
1 TTTTTTC
*
98296 TTTTAATC
1 TTTT-TTC
98304 TTTTTTC
1 TTTTTTC
*
98311 TTTTTTT
1 TTTTTTC
98318 TCTTTTTC
1 T-TTTTTC
98326 TT
1 TT
98328 CTCATTTTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
7 21 0.64
8 12 0.36
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTTC
Found at i:98325 original size:15 final size:15
Alignment explanation
Indices: 98274--98327 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
98264 TTCTTTCATT
*
98274 TTTTTCATTTTTTTC
1 TTTTTCTTTTTTTTC
**
98289 TTTTT-TCTTTTAATC
1 TTTTTCT-TTTTTTTC
98304 TTTTTTCTTTTTTTTC
1 -TTTTTCTTTTTTTTC
98320 TTTTTCTT
1 TTTTTCTT
98328 CTCATTTTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
15 19 0.61
16 11 0.35
17 1 0.03
ACGTcount: A:0.06, C:0.13, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTTCTTTTTTTTC
Found at i:98712 original size:24 final size:24
Alignment explanation
Indices: 98685--98730 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
98675 ATGTATGGCA
98685 TTCATTTCT-CTTTCCTTTCTTTCT
1 TTCATTT-TGCTTTCCTTTCTTTCT
*
98709 TTCATTTTGCTTTTCTTTCTTT
1 TTCATTTTGCTTTCCTTTCTTT
98731 TTCCTTTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.04, C:0.24, G:0.02, T:0.70
Consensus pattern (24 bp):
TTCATTTTGCTTTCCTTTCTTTCT
Found at i:98725 original size:16 final size:16
Alignment explanation
Indices: 98704--98744 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
98694 CTTTCCTTTC
*
98704 TTTCTTTCATTTTGCT
1 TTTCTTTCATTTTCCT
*
98720 TTTCTTTCTTTTTCCT
1 TTTCTTTCATTTTCCT
98736 TTTACTTTC
1 TTT-CTTTC
98745 TATCTTTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 17 0.77
17 5 0.23
ACGTcount: A:0.05, C:0.22, G:0.02, T:0.71
Consensus pattern (16 bp):
TTTCTTTCATTTTCCT
Found at i:100893 original size:19 final size:19
Alignment explanation
Indices: 100853--100903 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 19
100843 AAATTAATAT
100853 TTATTA-ATTATACTATTAA
1 TTATTATATT-TACTATTAA
100872 TTATTATATTTAC-ATTATA
1 TTATTATATTTACTATTA-A
*
100891 TTAATATTATTTA
1 TTATTA-TATTTA
100904 TAATATAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 4 0.14
19 15 0.54
20 9 0.32
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATTATATTTACTATTAA
Found at i:100950 original size:17 final size:17
Alignment explanation
Indices: 100854--100952 Score: 58
Period size: 17 Copynumber: 5.4 Consensus size: 17
100844 AATTAATATT
100854 TATTAATTATACTATTAA
1 TATTAATTATA-TATTAA
100872 TTATTATATTTACATTATATTAA
1 -TATTA-A-TT--A-TATATTAA
*
100895 TATTATTTATA-ATATAA
1 TATTAATTATATAT-TAA
* * *
100912 TA-AAATCTATTAGATAAA
1 TATTAAT-TA-TATATTAA
100930 TATTAATTATATATTAA
1 TATTAATTATATATTAA
100947 TATTAA
1 TATTAA
100953 ACAAATTATT
Statistics
Matches: 63, Mismatches: 7, Indels: 22
0.68 0.08 0.24
Matches are distributed among these distances:
16 4 0.06
17 21 0.33
18 9 0.14
19 10 0.16
20 3 0.05
21 2 0.03
22 5 0.08
23 7 0.11
24 2 0.03
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.49
Consensus pattern (17 bp):
TATTAATTATATATTAA
Found at i:101241 original size:12 final size:11
Alignment explanation
Indices: 101225--101265 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
101215 ATAATTATTC
101225 ATATTAATAAT
1 ATATTAATAAT
101236 AGTATTAATAAT
1 A-TATTAATAAT
* *
101248 ATTTTAATAAA
1 ATATTAATAAT
101259 ATATTAA
1 ATATTAA
101266 ATTAATTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 15 0.58
12 11 0.42
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (11 bp):
ATATTAATAAT
Found at i:101557 original size:14 final size:15
Alignment explanation
Indices: 101523--101562 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 15
101513 ATTCTTAATA
101523 TATAATTAT-AT-TT
1 TATAATTATAATATT
101536 TATAATTA-AATATT
1 TATAATTATAATATT
*
101550 TATTATTATAATA
1 TATAATTATAATA
101563 AATAAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 10 0.43
14 9 0.39
15 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TATAATTATAATATT
Found at i:101558 original size:20 final size:18
Alignment explanation
Indices: 101509--101566 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 18
101499 TAATTTAATA
* *
101509 ATTTATTCT-TAATATAT
1 ATTTATTTTATAATAAAT
101526 AATTATATTTTATAATTAAAT
1 -ATT-TATTTTATAA-TAAAT
101547 ATTTATTATTATAATAAAT
1 ATTTATT-TTATAATAAAT
101566 A
1 A
101567 AAATAATTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
18 3 0.09
19 15 0.44
20 12 0.35
21 4 0.12
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTTATTTTATAATAAAT
Found at i:101879 original size:23 final size:24
Alignment explanation
Indices: 101847--101893 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
101837 GAATTAGTAT
101847 TATCTATTTAATACTAATA-ATAA
1 TATCTATTTAATACTAATATATAA
* * *
101870 TATCTGTTTATTATTAATATATAA
1 TATCTATTTAATACTAATATATAA
101894 GATATTGTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.49
Consensus pattern (24 bp):
TATCTATTTAATACTAATATATAA
Found at i:102168 original size:19 final size:20
Alignment explanation
Indices: 102125--102169 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
102115 TTAATATTAA
*
102125 AATAATTTTAATTATTTATT
1 AATAATTTTAATTAATTATT
*
102145 TATAATTTTAA-TAATTATT
1 AATAATTTTAATTAATTATT
102164 AATAAT
1 AATAAT
102170 AAGTATTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
AATAATTTTAATTAATTATT
Found at i:102525 original size:36 final size:36
Alignment explanation
Indices: 102485--102577 Score: 88
Period size: 36 Copynumber: 2.7 Consensus size: 36
102475 TAATAGAATG
* *
102485 TAATATATTGT-ATTTATAAACTATATTA-TATATAA
1 TAATATATTATAATTTATAAAATA-ATTATTATATAA
* *
102520 TTAATAT-TTATAATTTGTAAAATAATTATTATTTAA
1 -TAATATATTATAATTTATAAAATAATTATTATATAA
*
102556 TAATATA-T-TAATTTCTAAAATA
1 TAATATATTATAATTTATAAAATA
102578 TCATAATATA
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
34 13 0.27
35 14 0.29
36 22 0.45
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (36 bp):
TAATATATTATAATTTATAAAATAATTATTATATAA
Found at i:102807 original size:15 final size:14
Alignment explanation
Indices: 102789--102830 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
102779 AATTTAATAT
102789 TATATTAATTAATTC
1 TATATTAA-TAATTC
102804 TATATTAATAATT-
1 TATATTAATAATTC
102817 TGATATATAATAAT
1 T-ATAT-TAATAAT
102831 ATAATTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.04
14 9 0.36
15 15 0.60
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (14 bp):
TATATTAATAATTC
Found at i:103013 original size:29 final size:29
Alignment explanation
Indices: 102981--103053 Score: 69
Period size: 31 Copynumber: 2.4 Consensus size: 29
102971 ATTAAATAAT
102981 TAATATATAATTATATTTATTTATAGTT-A
1 TAATATATAATTATA-TTATTTATAGTTAA
* *
103010 TAATAATTATAAATTCTATTATTTGTAGTTAA
1 TAAT-A-TAT-AATTATATTATTTATAGTTAA
103042 TAA-ATATTAATT
1 TAATATA-TAATT
103054 TATAGCAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
29 10 0.27
30 3 0.08
31 14 0.38
32 10 0.27
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.52
Consensus pattern (29 bp):
TAATATATAATTATATTATTTATAGTTAA
Found at i:103935 original size:23 final size:24
Alignment explanation
Indices: 103884--103935 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
103874 TTGGTAATCA
* *
103884 AAATTATTTTTTAAATCTATTATT
1 AAATTAATTTTTAAATATATTATT
*
103908 -TATTAATTTTTAAA-ATATTATT
1 AAATTAATTTTTAAATATATTATT
103930 AAATTA
1 AAATTA
103936 GTATTATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (24 bp):
AAATTAATTTTTAAATATATTATT
Found at i:104457 original size:53 final size:52
Alignment explanation
Indices: 104399--104554 Score: 129
Period size: 53 Copynumber: 2.8 Consensus size: 52
104389 TTAATTAAAT
104399 AATATAATTATTTATTATATTATAATTATTAA-TATTAAATAAGCTAATATAAG
1 AATATAATTATTTATTATATTATAATTATTAATTATTAAATAA-CT-ATATAAG
* * * *
104452 AATATAATAACTATTATTATAAATAGTCATAATTATTAATTTTTTAATAACTATATAAT
1 AATATAATTA-T-TTATTAT--AT--T-ATAATTATTAATTATTAAATAACTATATAAG
* *
104511 ATTATAATTAAATATATTATATT-TAA-TATATAATTATTAAATAA
1 AATATAATT--ATTTATTATATTATAATTAT-TAATTATTAAATAA
104555 AAATTAATTT
Statistics
Matches: 83, Mismatches: 9, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
52 3 0.04
53 24 0.29
54 1 0.01
55 8 0.10
57 4 0.05
59 20 0.24
60 14 0.17
61 9 0.11
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (52 bp):
AATATAATTATTTATTATATTATAATTATTAATTATTAAATAACTATATAAG
Found at i:104550 original size:14 final size:14
Alignment explanation
Indices: 104507--104606 Score: 53
Period size: 14 Copynumber: 7.8 Consensus size: 14
104497 AATAACTATA
104507 TAATATTATAATTA-
1 TAATA-TATAATTAT
*
104521 -AATATATTA-TATT
1 TAATATATAATTA-T
104534 TAATATATAATTAT
1 TAATATATAATTAT
*
104548 TAA-ATA-AA-AAT
1 TAATATATAATTAT
*
104559 TAATTTATAATTA-
1 TAATATATAATTAT
*
104572 TAA-AT-TAATAAT
1 TAATATATAATTAT
104584 T-AT-TATAATTAAT
1 TAATATATAATT-AT
104597 TAAT-TATAAT
1 TAATATATAAT
104607 AAATTAGCAT
Statistics
Matches: 66, Mismatches: 8, Indels: 24
0.67 0.08 0.24
Matches are distributed among these distances:
11 14 0.21
12 14 0.21
13 15 0.23
14 21 0.32
15 2 0.03
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TAATATATAATTAT
Found at i:104590 original size:17 final size:18
Alignment explanation
Indices: 104555--104612 Score: 75
Period size: 17 Copynumber: 3.3 Consensus size: 18
104545 TATTAAATAA
* *
104555 AAATTAATTTATAATTAT
1 AAATTAATTAATTATTAT
104573 AAATTAA-TAATTATTAT
1 AAATTAATTAATTATTAT
*
104590 -AATTAATTAATTATAAT
1 AAATTAATTAATTATTAT
104607 AAATTA
1 AAATTA
104613 GCATTAAATT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
16 6 0.17
17 17 0.49
18 12 0.34
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
AAATTAATTAATTATTAT
Found at i:104611 original size:14 final size:13
Alignment explanation
Indices: 104514--104740 Score: 64
Period size: 12 Copynumber: 18.2 Consensus size: 13
104504 ATATAATATT
*
104514 ATAATTAAATATATT
1 ATAATT-AAT-TATA
*
104529 ATATTTAATATATA
1 ATAATTAAT-TATA
*
104543 ATTATTAA--ATA
1 ATAATTAATTATA
*
104554 AAAATTAATTTATA
1 ATAATTAA-TTATA
* *
104568 ATTA-TAAAT-TA
1 ATAATTAATTATA
104579 ATAATT-ATTATA
1 ATAATTAATTATA
104591 ATTAATTAATTATA
1 A-TAATTAATTATA
104605 ATAAATTAGCATTA-A
1 AT-AATTA--ATTATA
** *
104620 ATTTTTTATTA-A
1 ATAATTAATTATA
*
104632 TATAA-TAAATATA
1 -ATAATTAATTATA
104645 AT-A-TAATTAT-
1 ATAATTAATTATA
104655 ATAATTATATT-T-
1 ATAATTA-ATTATA
*
104667 ATCAAATAA-TATA
1 AT-AATTAATTATA
* *
104680 TTAAAT-A-TATTA
1 ATAATTAATTA-TA
104692 ATAATT-ATT-TA
1 ATAATTAATTATA
*
104703 ATAATTATTTAT-
1 ATAATTAATTATA
104715 A-AATTAATTATA
1 ATAATTAATTATA
*
104727 ATAA-TAGTTATA
1 ATAATTAATTATA
104739 AT
1 AT
104741 TAGTACCATA
Statistics
Matches: 162, Mismatches: 26, Indels: 51
0.68 0.11 0.21
Matches are distributed among these distances:
10 2 0.01
11 45 0.28
12 47 0.29
13 24 0.15
14 32 0.20
15 8 0.05
16 4 0.02
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (13 bp):
ATAATTAATTATA
Found at i:104869 original size:22 final size:21
Alignment explanation
Indices: 104844--104996 Score: 83
Period size: 22 Copynumber: 7.2 Consensus size: 21
104834 ATTTTTAAAG
104844 ATTATAATTATTATTAATTAAT
1 ATTATAATTA-TATTAATTAAT
* *
104866 ATTATAATATTTATTATACTTTAT
1 ATTATAAT-TATATTA-A-TTAAT
*
104890 A-T-TAATTAAATTAATTAA-
1 ATTATAATTATATTAATTAAT
*
104908 ATTA-AA-TAAATTAATTAA-
1 ATTATAATTATATTAATTAAT
104926 A-TATAATTA-ATTTATATTAAT
1 ATTATAATTATA-TTA-ATTAAT
*
104947 AATATTAATTATATATAAATT-AT
1 ATTA-TAATTATAT-T-AATTAAT
104970 AATTATAA-TATATTAATATAATT
1 -ATTATAATTATATTAAT-TAA-T
104993 ATTA
1 ATTA
104997 ATTGAATAAT
Statistics
Matches: 106, Mismatches: 6, Indels: 38
0.71 0.04 0.25
Matches are distributed among these distances:
17 2 0.02
18 17 0.16
19 11 0.10
20 9 0.08
21 8 0.08
22 29 0.27
23 16 0.15
24 13 0.12
25 1 0.01
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTATAATTATATTAATTAAT
Found at i:104897 original size:4 final size:4
Alignment explanation
Indices: 104890--105014 Score: 60
Period size: 5 Copynumber: 28.5 Consensus size: 4
104880 TATACTTTAT
*
104890 ATTA ATTAA ATTA ATTAA ATTAA ATAA ATTA ATTAA ATATA ATTA ATTTA
1 ATTA ATT-A ATTA ATT-A ATT-A ATTA ATTA ATT-A AT-TA ATTA A-TTA
* *
104940 TATTA ATAA TATTA ATTA TATATAA ATT- A-TA ATTA TAATA TATTA ATATA
1 -ATTA ATTA -ATTA ATTA -AT-T-A ATTA ATTA ATTA -ATTA -ATTA AT-TA
104990 ATT- ATTA ATTGA A-TA ATTA ATTA AT
1 ATTA ATTA ATT-A ATTA ATTA ATTA AT
105015 AAAAGGTTAT
Statistics
Matches: 98, Mismatches: 6, Indels: 34
0.71 0.04 0.25
Matches are distributed among these distances:
2 1 0.01
3 7 0.07
4 41 0.42
5 43 0.44
6 5 0.05
7 1 0.01
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (4 bp):
ATTA
Done.