Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168071.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_32, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 761692
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.42
Warning! 1000 characters in sequence are not A, C, G, or T
File 3 of 17
Found at i:104904 original size:9 final size:9
Alignment explanation
Indices: 104890--104945 Score: 76
Period size: 9 Copynumber: 6.0 Consensus size: 9
104880 TATACTTTAT
104890 ATTAATTAA
1 ATTAATTAA
104899 ATTAATTAA
1 ATTAATTAA
*
104908 ATTAAATAA
1 ATTAATTAA
104917 ATTAATTAA
1 ATTAATTAA
104926 ATATAATTAA
1 AT-TAATTAA
*
104936 TTTATATTAA
1 ATTA-ATTAA
104946 TAATATTAAT
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
9 29 0.69
10 13 0.31
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
ATTAATTAA
Found at i:104912 original size:14 final size:14
Alignment explanation
Indices: 104893--104974 Score: 71
Period size: 14 Copynumber: 5.7 Consensus size: 14
104883 ACTTTATATT
104893 AATTAAATTAATTA
1 AATTAAATTAATTA
*
104907 AATTAAATAAATT-
1 AATTAAATTAATTA
104920 AATTAAATATAATTA
1 AATTAAAT-TAATTA
* *
104935 ATTTATATTAA-TA
1 AATTAAATTAATTA
104948 ATATT-AATTATATATA
1 A-ATTAAATTA-AT-TA
104964 AATTATAATTA
1 AATTA-AATTA
104975 TAATATATTA
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
13 15 0.28
14 22 0.41
15 9 0.17
16 3 0.06
17 5 0.09
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
AATTAAATTAATTA
Found at i:104943 original size:51 final size:50
Alignment explanation
Indices: 104866--105017 Score: 136
Period size: 51 Copynumber: 3.0 Consensus size: 50
104856 ATTAATTAAT
104866 ATTATAATATTTATTATACTTTATATTAATTAAATTAATTAAATTAAATAAATTA
1 ATTATAATA--TATTA-A-TTTATATTAATTAAATTAATTAAATTAAATAAA-TA
* *
104921 ATTA-AATATAATTAATTTATATTAA-TAATATTAATTATATATAAAT-TATA
1 ATTATAATAT-ATTAATTTATATTAATTAA-ATTAATTAAAT-TAAATAAATA
* *
104971 ATTATAATATATTAATATAATTATTAATTGAA-TAATT-AATT-AATAAA
1 ATTATAATATATTAAT-TTA-TATTAATTAAATTAATTAAATTAAATAAA
105018 AGGTTATAAT
Statistics
Matches: 83, Mismatches: 6, Indels: 22
0.75 0.05 0.20
Matches are distributed among these distances:
48 3 0.04
49 2 0.02
50 17 0.20
51 33 0.40
52 14 0.17
53 6 0.07
54 4 0.05
55 4 0.05
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (50 bp):
ATTATAATATATTAATTTATATTAATTAAATTAATTAAATTAAATAAATA
Found at i:105008 original size:12 final size:11
Alignment explanation
Indices: 104890--105016 Score: 71
Period size: 9 Copynumber: 12.1 Consensus size: 11
104880 TATACTTTAT
104890 ATTAATT-A-A
1 ATTAATTAATA
104899 ATTAATT-A-A
1 ATTAATTAATA
*
104908 ATTAAATAAATTA
1 ATT-AATTAA-TA
*
104921 ATTAAAT-ATA
1 ATTAATTAATA
*
104931 ATTAATTTAT-
1 ATTAATTAATA
104941 ATTAA-TAAT-
1 ATTAATTAATA
104950 ATTAATT-ATA
1 ATTAATTAATA
*
104960 TATAAATT-ATA
1 -ATTAATTAATA
104971 ATT-A-TAATA
1 ATTAATTAATA
*
104980 TATTAATATAATT
1 -ATTAAT-TAATA
104993 ATTAATTGAATA
1 ATTAATT-AATA
105005 ATTAATTAATA
1 ATTAATTAATA
105016 A
1 A
105017 AAGGTTATAA
Statistics
Matches: 95, Mismatches: 9, Indels: 26
0.73 0.07 0.20
Matches are distributed among these distances:
8 1 0.01
9 26 0.27
10 22 0.23
11 20 0.21
12 18 0.19
13 8 0.08
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.46
Consensus pattern (11 bp):
ATTAATTAATA
Found at i:105271 original size:24 final size:24
Alignment explanation
Indices: 105244--105292 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
105234 ATGAACTAAG
105244 ATAATTGTAATAAT-TATTA-TTATA
1 ATAATT-T-ATAATATATTATTTATA
105268 ATAATTTATAATATATTATTTATA
1 ATAATTTATAATATATTATTTATA
105292 A
1 A
105293 CACGTTCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 5 0.22
23 6 0.26
24 12 0.52
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
ATAATTTATAATATATTATTTATA
Found at i:105594 original size:7 final size:7
Alignment explanation
Indices: 105554--105652 Score: 63
Period size: 7 Copynumber: 14.9 Consensus size: 7
105544 AAATAACTTA
105554 AATATAT
1 AATATAT
105561 AATAGT-T
1 AATA-TAT
*
105568 ATTCATAT
1 AAT-ATAT
*
105576 TATATA-
1 AATATAT
105582 AATATAT
1 AATATAT
105589 AATATAT
1 AATATAT
105596 AATATAT
1 AATATAT
105603 --TATAT
1 AATATAT
105608 AAT-TAT
1 AATATAT
105614 -ATAGTAT
1 AATA-TAT
105621 AATATAT
1 AATATAT
105628 --TAGTAT
1 AATA-TAT
*
105634 AATTTAT
1 AATATAT
105641 AA-ATAT
1 AATATAT
*
105647 GATATA
1 AATATA
105653 ATTAGATTAT
Statistics
Matches: 72, Mismatches: 7, Indels: 26
0.69 0.07 0.25
Matches are distributed among these distances:
5 9 0.12
6 15 0.21
7 40 0.56
8 8 0.11
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.45
Consensus pattern (7 bp):
AATATAT
Found at i:105595 original size:20 final size:20
Alignment explanation
Indices: 105572--105646 Score: 59
Period size: 20 Copynumber: 3.8 Consensus size: 20
105562 ATAGTTATTC
105572 ATATTATATAAATATATAAT
1 ATATTATATAAATATATAAT
* *
105592 ATATAATAT-ATTATATAAT
1 ATATTATATAAATATATAAT
*
105611 -TA-TATAGTATAATATATTAGT
1 ATATTATA-TA-AATATA-TAAT
105632 ATAATT-TATAAATAT
1 AT-ATTATATAAATAT
105647 GATATAATTA
Statistics
Matches: 43, Mismatches: 5, Indels: 13
0.70 0.08 0.21
Matches are distributed among these distances:
17 3 0.07
18 3 0.07
19 9 0.21
20 13 0.30
21 8 0.19
22 3 0.07
23 3 0.07
24 1 0.02
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.47
Consensus pattern (20 bp):
ATATTATATAAATATATAAT
Found at i:105614 original size:27 final size:26
Alignment explanation
Indices: 105572--105652 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 26
105562 ATAGTTATTC
*
105572 ATATTATATAAATATAT-AATATATAAT
1 ATATTATATAATTATATAAATAT--AAT
*
105599 ATATTATATAATTATAT-AGTATAAT
1 ATATTATATAATTATATAAATATAAT
*
105624 ATATTAGTATAATT-TATAAATATGAT
1 ATATTA-TATAATTATATAAATATAAT
105650 ATA
1 ATA
105653 ATTAGATTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
25 12 0.25
26 16 0.33
27 20 0.42
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.46
Consensus pattern (26 bp):
ATATTATATAATTATATAAATATAAT
Found at i:105631 original size:13 final size:12
Alignment explanation
Indices: 105572--105636 Score: 69
Period size: 13 Copynumber: 5.0 Consensus size: 12
105562 ATAGTTATTC
105572 ATATTATATAAAT
1 ATATTATAT-AAT
105585 ATATAATATATAAT
1 ATAT--TATATAAT
105599 ATATTATATAAT
1 ATATTATATAAT
105611 -TATATAGTATAAT
1 ATAT-TA-TATAAT
105624 ATATTAGTATAAT
1 ATATTA-TATAAT
105637 TTATAAATAT
Statistics
Matches: 47, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
11 3 0.06
12 10 0.21
13 19 0.40
14 10 0.21
15 5 0.11
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (12 bp):
ATATTATATAAT
Found at i:106334 original size:18 final size:18
Alignment explanation
Indices: 106311--106363 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
106301 TTAATTTATC
106311 ATTAATTTTATAATATTA
1 ATTAATTTTATAATATTA
* *
106329 ATTAATTATAAAATATT-
1 ATTAATTTTATAATATTA
*
106346 A-TAATACTTATAATATTA
1 ATTAAT-TTTATAATATTA
106364 TAAGTAATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
16 4 0.14
17 9 0.32
18 15 0.54
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTAATTTTATAATATTA
Found at i:106362 original size:17 final size:17
Alignment explanation
Indices: 106318--106371 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
106308 ATCATTAATT
*
106318 TTATAATATTA-ATTAA
1 TTATAATATTATAATAA
*
106334 TTATAAAATATTATAATAC
1 TTAT--AATATTATAATAA
106353 TTATAATATTATAAGTAA
1 TTATAATATTATAA-TAA
106371 T
1 T
106372 ATTATCAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
16 4 0.13
17 10 0.32
18 10 0.32
19 7 0.23
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (17 bp):
TTATAATATTATAATAA
Found at i:106724 original size:27 final size:26
Alignment explanation
Indices: 106694--106753 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 26
106684 AATTGTATAT
106694 TAATAAATTT-AATATA-TTATAATTAAA
1 TAATAAATTTCAAT-TAGTTAT-ATT-AA
106721 TAATATAATTTCAATTAGTTATATTAA
1 TAATA-AATTTCAATTAGTTATATTAA
106748 TAATAA
1 TAATAA
106754 TAATTATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
26 1 0.03
27 12 0.40
28 10 0.33
29 7 0.23
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (26 bp):
TAATAAATTTCAATTAGTTATATTAA
Found at i:106731 original size:28 final size:27
Alignment explanation
Indices: 106694--106772 Score: 76
Period size: 28 Copynumber: 2.9 Consensus size: 27
106684 AATTGTATAT
106694 TAATA-AATTTAATATATTATAATTAAA
1 TAATATAATTTAATATATTATAATT-AA
106721 TAATATAATTTCAAT-TAGTTAT-ATTAA
1 TAATATAATTT-AATATA-TTATAATTAA
106748 TAATAATAATTATAA-ATAATTATAA
1 TAAT-ATAATT-TAATAT-ATTATAA
106773 AATATTATAT
Statistics
Matches: 44, Mismatches: 0, Indels: 14
0.76 0.00 0.24
Matches are distributed among these distances:
27 11 0.25
28 23 0.52
29 10 0.23
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (27 bp):
TAATATAATTTAATATATTATAATTAA
Found at i:106819 original size:16 final size:18
Alignment explanation
Indices: 106800--106840 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
106790 TTATATTCTA
106800 ATATAATTA-ATA-AATT
1 ATATAATTAGATATAATT
*
106816 ATATAATTAGTTATAATT
1 ATATAATTAGATATAATT
106834 ATATAAT
1 ATATAAT
106841 ATTAATAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.41
17 2 0.09
18 11 0.50
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
ATATAATTAGATATAATT
Found at i:106830 original size:26 final size:27
Alignment explanation
Indices: 106801--106851 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
106791 TATATTCTAA
106801 TATAATTA-ATAA-ATTATATAATTAGT
1 TATAATTATATAATATTA-ATAATTAGT
106827 TATAATTATATAATATTAATAATTA
1 TATAATTATATAATATTAATAATTA
106852 ATTTATTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 8 0.35
27 11 0.48
28 4 0.17
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (27 bp):
TATAATTATATAATATTAATAATTAGT
Found at i:106854 original size:47 final size:46
Alignment explanation
Indices: 106739--106854 Score: 114
Period size: 47 Copynumber: 2.5 Consensus size: 46
106729 TTTCAATTAG
* * *
106739 TTATATTAATAATAATAATT-ATAAATAATTATAAAATATTATATA
1 TTATACTAATATTAATAATTAATTAATAATTATAAAATATTATATA
* * *
106784 TTATACTTATATT-CTAATATAATTAATAAATTATATAATTAGTTATA-A
1 TTATACTAATATTAATAAT-TAATTAAT-AATTATA-AAATA-TTATATA
106832 TTATA-TAATATTAATAATTAATT
1 TTATACTAATATTAATAATTAATT
106855 TATTGTTCAT
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
44 4 0.07
45 11 0.19
46 5 0.09
47 18 0.32
48 14 0.25
49 5 0.09
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (46 bp):
TTATACTAATATTAATAATTAATTAATAATTATAAAATATTATATA
Found at i:107038 original size:26 final size:25
Alignment explanation
Indices: 106992--107074 Score: 89
Period size: 25 Copynumber: 3.2 Consensus size: 25
106982 TAATTATAAT
* *
106992 TTAATATA-AAATAATAT-TAATTA
1 TTAATTTATAAATTATATATAATTA
107015 TTATATTTATAAATTATATATAATTA
1 TTA-ATTTATAAATTATATATAATTA
107041 TTAATTTATAATATTATAATTATAATATA
1 TTAATTTATAA-ATTAT-A-TATAAT-TA
107070 TTAAT
1 TTAAT
107075 AATAAGGTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
23 3 0.06
24 4 0.08
25 16 0.31
26 14 0.27
27 1 0.02
28 6 0.12
29 7 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (25 bp):
TTAATTTATAAATTATATATAATTA
Found at i:107058 original size:33 final size:32
Alignment explanation
Indices: 107001--107077 Score: 88
Period size: 32 Copynumber: 2.4 Consensus size: 32
106991 TTTAATATAA
*
107001 AATAA-TATTAA-TTATTATATTTATAAATTAT
1 AATAATTATTAATTTATAATATTTAT-AATTAT
107032 ATATAATTATTAATTTATAATA-TTATAATTAT
1 A-ATAATTATTAATTTATAATATTTATAATTAT
*
107064 AATATATTAATAAT
1 AATA-ATTATTAAT
107078 AAGGTGATGT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
31 4 0.10
32 19 0.47
33 10 0.25
34 7 0.17
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (32 bp):
AATAATTATTAATTTATAATATTTATAATTAT
Found at i:107568 original size:14 final size:15
Alignment explanation
Indices: 107540--107655 Score: 55
Period size: 15 Copynumber: 7.7 Consensus size: 15
107530 GTAATATTAA
*
107540 AATATATTATCTAAT
1 AATATATTATATAAT
107555 AATAT-TTATATAAT
1 AATATATTATATAAT
*
107569 -ATAATATTATTTAATT
1 AAT-ATATTATATAA-T
* *
107585 AATAAATAATTAAATATT
1 AAT--AT-ATTATATAAT
*
107603 AATTATATT-TATATT
1 AA-TATATTATATAAT
*
107618 AAATATATTATA-ATT
1 -AATATATTATATAAT
*
107633 AAT-TATAATATAAT
1 AATATATTATATAAT
*
107647 TATAT-TTAT
1 AATATATTAT
107656 TATATTGTAA
Statistics
Matches: 80, Mismatches: 10, Indels: 23
0.71 0.09 0.20
Matches are distributed among these distances:
13 8 0.10
14 20 0.25
15 27 0.34
16 8 0.10
17 4 0.05
18 6 0.08
19 7 0.09
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (15 bp):
AATATATTATATAAT
Found at i:107583 original size:26 final size:26
Alignment explanation
Indices: 107554--107628 Score: 61
Period size: 26 Copynumber: 3.0 Consensus size: 26
107544 TATTATCTAA
107554 TAATATTTATATAATATAATATTATT
1 TAATATTTATATAATATAATATTATT
* * *
107580 TAAT-TAATAAATAAT-TAAATATTAAT
1 TAATAT-TTATATAATAT-AATATTATT
107606 T-ATATTTATATTAA-AT-ATATTAT
1 TAATATTTATA-TAATATAATATTAT
107629 AATTAATTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 12
0.68 0.11 0.21
Matches are distributed among these distances:
24 6 0.16
25 7 0.18
26 25 0.66
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (26 bp):
TAATATTTATATAATATAATATTATT
Found at i:107608 original size:30 final size:30
Alignment explanation
Indices: 107574--107639 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
107564 ATAATATAAT
107574 ATTAT-TTAATTAATAAATA-ATTAAATATTA
1 ATTATATTAA-TAATAAATATATTAAA-ATTA
* * *
107604 ATTATATTTATATTAAATATATTATAATTA
1 ATTATATTAATAATAAATATATTAAAATTA
107634 ATTATA
1 ATTATA
107640 ATATAATTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
30 23 0.74
31 8 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (30 bp):
ATTATATTAATAATAAATATATTAAAATTA
Found at i:107616 original size:15 final size:14
Alignment explanation
Indices: 107598--107661 Score: 67
Period size: 15 Copynumber: 4.4 Consensus size: 14
107588 AAATAATTAA
107598 ATATTAATTATATTT
1 ATATTAATTATA-TT
*
107613 ATATTAAATATATT
1 ATATTAATTATATT
*
107627 ATAATTAATTATAAT
1 AT-ATTAATTATATT
107642 ATAATTATATT-TATT
1 AT-ATTA-ATTATATT
107657 ATATT
1 ATATT
107662 GTAATAATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
14 7 0.16
15 33 0.77
16 3 0.07
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
ATATTAATTATATT
Found at i:107618 original size:41 final size:42
Alignment explanation
Indices: 107572--107687 Score: 127
Period size: 41 Copynumber: 2.8 Consensus size: 42
107562 ATATAATATA
107572 ATATTATTTAATTAATAAATAATTA-AATATTAATTATATTT
1 ATATTATTTAATTAATAAATAATTATAATATTAATTATATTT
** *
107613 ATATTAAATATATT-ATAATTAATTATAATA-TAATTATATTT
1 ATATTATTTA-ATTAATAAATAATTATAATATTAATTATATTT
*
107654 AT-TATATTGTAA-TAATATA-AATTATAATATTAAT
1 ATAT-TATT-TAATTAATAAATAATTATAATATTAAT
107688 AATTTGATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
40 12 0.19
41 41 0.66
42 9 0.15
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (42 bp):
ATATTATTTAATTAATAAATAATTATAATATTAATTATATTT
Found at i:107656 original size:4 final size:5
Alignment explanation
Indices: 107598--107661 Score: 55
Period size: 5 Copynumber: 13.0 Consensus size: 5
107588 AAATAATTAA
* *
107598 ATATT A-ATT ATATTT ATATT A-AAT ATATT ATAATT A-ATT ATAAT ATAATT
1 ATATT ATATT ATA-TT ATATT ATATT ATATT AT-ATT ATATT ATATT AT-ATT
107648 ATATT -TATT ATATT
1 ATATT ATATT ATATT
107662 GTAATAATAT
Statistics
Matches: 48, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
4 15 0.31
5 20 0.42
6 13 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (5 bp):
ATATT
Found at i:107657 original size:20 final size:20
Alignment explanation
Indices: 107591--107683 Score: 84
Period size: 20 Copynumber: 4.6 Consensus size: 20
107581 AATTAATAAA
107591 TAATTA-AATATTAATTATATT
1 TAATTATAATA-TAATTATA-T
107612 TATATTA-AATAT-ATTATAAT
1 TA-ATTATAATATAATTAT-AT
107632 TAATTATAATATAATTATAT
1 TAATTATAATATAATTATAT
* * * *
107652 TTATTATATTGTAATAATAT
1 TAATTATAATATAATTATAT
*
107672 AAATTATAATAT
1 TAATTATAATAT
107684 TAATAATTTG
Statistics
Matches: 60, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
19 4 0.07
20 39 0.65
21 9 0.15
22 8 0.13
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (20 bp):
TAATTATAATATAATTATAT
Found at i:107657 original size:30 final size:30
Alignment explanation
Indices: 107587--107659 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 30
107577 ATTTAATTAA
* *
107587 TAAATA-ATTAAATATTAATTATATTTATAT
1 TAAATATATTATA-ATTAATTATATATATAT
107617 TAAATATATTATAATTAATTATA-ATATAAT
1 TAAATATATTATAATTAATTATATATAT-AT
* *
107647 TATATTTATTATA
1 TAAATATATTATA
107660 TTGTAATAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
29 3 0.08
30 29 0.78
31 5 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (30 bp):
TAAATATATTATAATTAATTATATATATAT
Found at i:107660 original size:17 final size:15
Alignment explanation
Indices: 107563--107648 Score: 56
Period size: 15 Copynumber: 5.9 Consensus size: 15
107553 ATAATATTTA
*
107563 TATAATATAATATTAT
1 TATAATATAAT-TAAT
*
107579 T-TAAT-TAATAAAT
1 TATAATATAATTAAT
*
107592 AATTAA-AT-ATTAAT
1 TA-TAATATAATTAAT
* *
107606 TAT-ATTTATATTAAA
1 TATAATATA-ATTAAT
*
107621 TATATTATAATTAAT
1 TATAATATAATTAAT
107636 TATAATATAATTA
1 TATAATATAATTA
107649 TATTTATTAT
Statistics
Matches: 52, Mismatches: 11, Indels: 15
0.67 0.14 0.19
Matches are distributed among these distances:
12 1 0.02
13 4 0.08
14 10 0.19
15 33 0.63
16 4 0.08
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
TATAATATAATTAAT
Found at i:107678 original size:50 final size:51
Alignment explanation
Indices: 107551--107689 Score: 150
Period size: 50 Copynumber: 2.8 Consensus size: 51
107541 ATATATTATC
*
107551 TAATAATATTTATATAATATAATATTAT--TTAATTAATAAATAATTAAATAT
1 TAATTATATTTATATAATATAA-ATTATAATTAATTAATAAATAATT-AATAT
*
107602 TAATTATATTTATATTAA-ATATATTATAATTAATT-ATAATATAATT-ATAT
1 TAATTATATTTATA-TAATATAAATTATAATTAATTAATAA-ATAATTAATAT
*
107652 TTATTATATTGTA-ATAATATAAATTATAA-T-ATTAATAA
1 TAATTATATT-TATATAATATAAATTATAATTAATTAATAA
107690 TTTGATATAT
Statistics
Matches: 77, Mismatches: 4, Indels: 16
0.79 0.04 0.16
Matches are distributed among these distances:
48 3 0.04
49 8 0.10
50 29 0.38
51 22 0.29
52 15 0.19
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (51 bp):
TAATTATATTTATATAATATAAATTATAATTAATTAATAAATAATTAATAT
Found at i:107971 original size:29 final size:29
Alignment explanation
Indices: 107939--107994 Score: 71
Period size: 28 Copynumber: 1.9 Consensus size: 29
107929 ATATTTGAAT
107939 AATTATCAAATAACTAA-AAATAA-TTATTA
1 AATTAT-AAATAA-TAACAAATAAGTTATTA
*
107968 AATTATTAATAATAACAAATAAGTTAT
1 AATTATAAATAATAACAAATAAGTTAT
107995 AAACAATTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 3 0.12
28 11 0.46
29 10 0.42
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (29 bp):
AATTATAAATAATAACAAATAAGTTATTA
Found at i:108241 original size:26 final size:26
Alignment explanation
Indices: 108187--108238 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
108177 ATGTTATTAT
* *
108187 ATAATTTATTAATTATTAATTAATAA
1 ATAATTTATTAAATATTAATAAATAA
108213 ATAATTTATTAAATATT-ATAAATAA
1 ATAATTTATTAAATATTAATAAATAA
108238 A
1 A
108239 ATAGTAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (26 bp):
ATAATTTATTAAATATTAATAAATAA
Found at i:108262 original size:12 final size:12
Alignment explanation
Indices: 108245--108274 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
108235 TAAAATAGTA
108245 ATAATATATATT
1 ATAATATATATT
108257 ATAATATATATT
1 ATAATATATATT
108269 A-AATAT
1 ATAATAT
108275 TGTTAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.28
12 13 0.72
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
ATAATATATATT
Found at i:108820 original size:15 final size:15
Alignment explanation
Indices: 108789--108843 Score: 51
Period size: 15 Copynumber: 3.6 Consensus size: 15
108779 ATTGAGTTTG
*
108789 ATATTTAGTT-ATGTA
1 ATATTTA-TTCATATA
108804 ATATTTATTCATATA
1 ATATTTATTCATATA
*
108819 AT-TTTATATCATATTT
1 ATATTTAT-TCATA-TA
108835 ATATTTATT
1 ATATTTATT
108844 AATTGGATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
14 7 0.21
15 18 0.53
16 4 0.12
17 5 0.15
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (15 bp):
ATATTTATTCATATA
Found at i:109169 original size:13 final size:13
Alignment explanation
Indices: 109134--109171 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
109124 TAATAAATTG
109134 TTATAAATCTATAT
1 TTATAAAT-TATAT
109148 TTA-ATAATTATAT
1 TTATA-AATTATAT
109161 TTATAAATTAT
1 TTATAAATTAT
109172 TATAATCATG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
TTATAAATTATAT
Found at i:109504 original size:29 final size:31
Alignment explanation
Indices: 109471--109551 Score: 75
Period size: 27 Copynumber: 2.7 Consensus size: 31
109461 TTTGTTAACT
109471 TAATTTGTATAATATATTAAATAA-A-T-ATA
1 TAATTT-TATAATATATTAAATAATATTAATA
* *
109500 TAA-TTTATTATAAATT-AATAATATTAATA
1 TAATTTTATAATATATTAAATAATATTAATA
109529 TAATTTATATTAATAT-TTAAATA
1 TAATTT-TA-TAATATATTAAATA
109552 TTAATATAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
26 5 0.12
27 10 0.24
28 3 0.07
29 9 0.22
30 2 0.05
31 4 0.10
32 8 0.20
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (31 bp):
TAATTTTATAATATATTAAATAATATTAATA
Found at i:109529 original size:6 final size:6
Alignment explanation
Indices: 109518--109577 Score: 63
Period size: 6 Copynumber: 10.0 Consensus size: 6
109508 TATAAATTAA
*
109518 TAATAT TAATA- TAAT-T T-ATAT TAATATT TAAATAT TAATAT AAATAT
1 TAATAT TAATAT TAATAT TAATAT TAATA-T T-AATAT TAATAT TAATAT
109565 TAATAAT TAATAT
1 TAAT-AT TAATAT
109578 AATTAATAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
4 2 0.04
5 7 0.15
6 23 0.50
7 10 0.22
8 4 0.09
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
TAATAT
Found at i:109552 original size:29 final size:29
Alignment explanation
Indices: 109471--109585 Score: 91
Period size: 29 Copynumber: 4.0 Consensus size: 29
109461 TTTGTTAACT
* *
109471 TAATTTGTA-TAATATATTAAATA-AATATA
1 TAATTTATATTAATAT-TTAAATATTA-ATA
*
109500 TAATTTAT-TATAA-ATTAATAATATTAATA
1 TAATTTATAT-TAATATTTA-AATATTAATA
109529 TAATTTATATTAATATTTAAATATTAATA
1 TAATTTATATTAATATTTAAATATTAATA
*
109558 TAA---ATATTAATAATTAATATAATTAATA
1 TAATTTATATTAATATTTAA-AT-ATTAATA
109586 ATTAAATATC
Statistics
Matches: 73, Mismatches: 5, Indels: 17
0.77 0.05 0.18
Matches are distributed among these distances:
26 13 0.18
27 2 0.03
28 9 0.12
29 40 0.55
30 9 0.12
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (29 bp):
TAATTTATATTAATATTTAAATATTAATA
Found at i:109573 original size:19 final size:18
Alignment explanation
Indices: 109517--109613 Score: 65
Period size: 20 Copynumber: 5.1 Consensus size: 18
109507 TTATAAATTA
*
109517 ATAATATTAATATAATTTAT
1 ATAATATT-A-ATAATTAAT
109537 ATTAATATTTAA-ATATTAAT
1 A-TAATA-TTAATA-ATTAAT
109557 ATAAATATTAATAATTAAT
1 AT-AATATTAATAATTAAT
109576 AT-A-ATTAATAATTAAAT
1 ATAATATTAATAATT-AAT
* *
109593 ATCATAATTAAAGAATTAAT
1 ATAAT-ATT-AATAATTAAT
109613 A
1 A
109614 ATTAATTAAT
Statistics
Matches: 65, Mismatches: 2, Indels: 20
0.75 0.02 0.23
Matches are distributed among these distances:
16 10 0.15
17 6 0.09
18 1 0.02
19 14 0.22
20 20 0.31
21 12 0.18
22 2 0.03
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (18 bp):
ATAATATTAATAATTAAT
Found at i:109586 original size:7 final size:7
Alignment explanation
Indices: 109512--109619 Score: 54
Period size: 7 Copynumber: 16.0 Consensus size: 7
109502 ATTTATTATA
109512 AATTAAT
1 AATTAAT
*
109519 AA-TATT
1 AATTAAT
109525 AA-T-AT
1 AATTAAT
*
109530 AATTTAT
1 AATTAAT
109537 -ATTAAT
1 AATTAAT
*
109543 ATTTAA-
1 AATTAAT
109549 ATATTAAT
1 A-ATTAAT
*
109557 -ATAAAT
1 AATTAAT
109563 -ATTAAT
1 AATTAAT
109569 AATTAATAT
1 AATT-A-AT
109578 AATTAAT
1 AATTAAT
109585 AATT-A-
1 AATTAAT
*
109590 AATATCAT
1 AAT-TAAT
*
109598 AATTAAAG
1 AATT-AAT
109606 AATTAAT
1 AATTAAT
109613 AATTAAT
1 AATTAAT
109620 TAATAGCATA
Statistics
Matches: 79, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
5 6 0.08
6 25 0.32
7 32 0.41
8 10 0.13
9 6 0.08
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.44
Consensus pattern (7 bp):
AATTAAT
Found at i:109590 original size:35 final size:35
Alignment explanation
Indices: 109480--109590 Score: 114
Period size: 35 Copynumber: 3.3 Consensus size: 35
109470 TTAATTTGTA
*
109480 TAATATATTAA-ATAAATA-TATAATTTATTATAAAT
1 TAATATATTAATATAAATATTATAA-TTAATAT-AAT
109515 TAATAATATTAATAT-AAT-TTAT-ATTAATAT--T
1 TAAT-ATATTAATATAAATATTATAATTAATATAAT
109546 TAA-ATATTAATATAAATATTAATAATTAATATAAT
1 TAATATATTAATATAAATATT-ATAATTAATATAAT
109581 TAATA-ATTAA
1 TAATATATTAA
109591 ATATCATAAT
Statistics
Matches: 65, Mismatches: 1, Indels: 20
0.76 0.01 0.23
Matches are distributed among these distances:
29 10 0.15
30 3 0.05
31 6 0.09
32 2 0.03
33 8 0.12
34 6 0.09
35 14 0.22
36 14 0.22
37 2 0.03
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (35 bp):
TAATATATTAATATAAATATTATAATTAATATAAT
Found at i:109603 original size:48 final size:47
Alignment explanation
Indices: 109478--109624 Score: 122
Period size: 48 Copynumber: 3.0 Consensus size: 47
109468 ACTTAATTTG
* * *
109478 TATAATATATTAAATAAATATATAATTTATTATAAATTAATAATATTAA
1 TATAAT-TAATAATTAAATATATAA-TTAATATAAATTAATAATATTAA
* * * *
109527 TATAATTTAT-ATTAATATTTAAATATTAATATAAA-TATTAATAATTAA
1 TATAATTAATAATTAA-ATATATA-ATTAATATAAATTAATAAT-ATTAA
*
109575 TATAATTAATAATTAAATATCATAATTAA-A-GAATTAATAATTAATTAA
1 TATAATTAATAATTAAATAT-ATAATTAATATAAATTAATAA-T-ATTAA
109623 TA
1 TA
109625 GCATAATAAT
Statistics
Matches: 79, Mismatches: 12, Indels: 15
0.75 0.11 0.14
Matches are distributed among these distances:
46 2 0.03
47 16 0.20
48 47 0.59
49 14 0.18
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (47 bp):
TATAATTAATAATTAAATATATAATTAATATAAATTAATAATATTAA
Found at i:109609 original size:28 final size:30
Alignment explanation
Indices: 109553--109618 Score: 91
Period size: 28 Copynumber: 2.2 Consensus size: 30
109543 ATTTAAATAT
*
109553 TAATATAAATATTAATAATTAATATAATTAA
1 TAAT-TAAATATTAATAATTAATAGAATTAA
*
109584 TAATTAAATA-TCATAATTAA-AGAATTAA
1 TAATTAAATATTAATAATTAATAGAATTAA
109612 TAATTAA
1 TAATTAA
109619 TTAATAGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
28 14 0.42
29 9 0.27
30 6 0.18
31 4 0.12
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (30 bp):
TAATTAAATATTAATAATTAATAGAATTAA
Found at i:110764 original size:22 final size:20
Alignment explanation
Indices: 110722--110764 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
110712 TAAGCAATTG
*
110722 TTATAATTTATATTAATTAA
1 TTATAATATATATTAATTAA
110742 TTATAATATATCATTGAATTAA
1 TTATAATATAT-ATT-AATTAA
110764 T
1 T
110765 GAAGTTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 3 0.15
22 7 0.35
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (20 bp):
TTATAATATATATTAATTAA
Found at i:110829 original size:22 final size:22
Alignment explanation
Indices: 110803--110895 Score: 66
Period size: 24 Copynumber: 4.2 Consensus size: 22
110793 ATGATTTGTC
* *
110803 ATATAAATAATATTTATATAAT
1 ATATAAATAATATATACATAAT
110825 ATATAAAGTATATATATACATAAT
1 ATATAAA-TA-ATATATACATAAT
* * * *
110849 TTATCAATAATATGAAACAATATT
1 ATATAAATAATAT-ATAC-ATAAT
*
110873 ATATTAATAA-ATATA-AT-AT
1 ATATAAATAATATATACATAAT
110892 ATAT
1 ATAT
110896 TTTATGACAA
Statistics
Matches: 57, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
19 5 0.09
20 2 0.04
22 13 0.23
23 9 0.16
24 28 0.49
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (22 bp):
ATATAAATAATATATACATAAT
Found at i:111010 original size:18 final size:20
Alignment explanation
Indices: 110987--111032 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
110977 TAAGTGTATA
*
110987 ATTAATTTAA-AA-TTAATT
1 ATTAATATAACAATTTAATT
111005 ATTAATATAACAATTTAATT
1 ATTAATATAACAATTTAATT
111025 ATCTAATA
1 AT-TAATA
111033 ATATATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 9 0.38
19 2 0.08
20 8 0.33
21 5 0.21
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (20 bp):
ATTAATATAACAATTTAATT
Found at i:111062 original size:6 final size:6
Alignment explanation
Indices: 111044--111098 Score: 53
Period size: 6 Copynumber: 9.3 Consensus size: 6
111034 TATATTATTA
* *
111044 TATAAT TAT-AT TATAAT TATAAG TATAAAT TATAA- -GTAAT TAATAAT
1 TATAAT TATAAT TATAAT TATAAT TAT-AAT TATAAT TATAAT T-ATAAT
111091 TATAAT TA
1 TATAAT TA
111099 CTACAAATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
4 3 0.08
5 5 0.12
6 22 0.55
7 10 0.25
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (6 bp):
TATAAT
Found at i:111096 original size:13 final size:13
Alignment explanation
Indices: 110954--111098 Score: 54
Period size: 16 Copynumber: 10.8 Consensus size: 13
110944 TTAATTTATT
110954 ATTA-AATTAATA
1 ATTATAATTAATA
110966 A-TATAATTAACTA
1 ATTATAATTAA-TA
110979 AGTGTATAATTAAT-
1 A-T-TATAATTAATA
* *
110993 -TTAAAATTAATT
1 ATTATAATTAATA
*
111005 A-T-TAATATAACA
1 ATTATAAT-TAATA
*
111017 ATTTAATTATCTAATA
1 A-TT-ATAAT-TAATA
*
111033 ATATATTATTATATA
1 AT-TATAATTA-ATA
111048 ATTAT-ATT-ATA
1 ATTATAATTAATA
*
111059 ATTATAAGTATAAATT
1 ATTATAA-T-T-AATA
*
111075 ATAAGTAATTAATA
1 ATTA-TAATTAATA
111089 ATTATAATTA
1 ATTATAATTA
111099 CTACAAATAT
Statistics
Matches: 102, Mismatches: 11, Indels: 39
0.67 0.07 0.26
Matches are distributed among these distances:
11 22 0.22
12 14 0.14
13 13 0.13
14 13 0.13
15 13 0.13
16 24 0.24
17 3 0.03
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (13 bp):
ATTATAATTAATA
Found at i:111496 original size:10 final size:10
Alignment explanation
Indices: 111464--111505 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
111454 TAACTAAACT
111464 AAATTTAATA
1 AAATTTAATA
111474 AAATTATATATA
1 AAATT-TA-ATA
111486 AAATTTAATA
1 AAATTTAATA
111496 ATAA-TTAATA
1 A-AATTTAATA
111506 GTTAATTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 15 0.52
11 6 0.21
12 8 0.28
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
AAATTTAATA
Found at i:113111 original size:20 final size:20
Alignment explanation
Indices: 113073--113111 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
113063 AATAACTTAT
*
113073 TATTTATATTATTATATAAA
1 TATTTATATTAGTATATAAA
113093 TATTTA-ATTAGTATGATAA
1 TATTTATATTAGTAT-ATAA
113112 TTTGAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
TATTTATATTAGTATATAAA
Found at i:113186 original size:20 final size:20
Alignment explanation
Indices: 113137--113187 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
113127 TTATCATTAA
113137 TAATAATTATTTAACTATAT
1 TAATAATTATTTAACTATAT
* *
113157 TATTATTTATTATAA-TA-ATT
1 TAATAATTATT-TAACTATA-T
113177 TAATAATTATT
1 TAATAATTATT
113188 GAAATATTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
TAATAATTATTTAACTATAT
Found at i:113315 original size:25 final size:25
Alignment explanation
Indices: 113287--113347 Score: 63
Period size: 27 Copynumber: 2.4 Consensus size: 25
113277 TAACTAACAT
*
113287 TATAATATTA-TATTTATAA-TAATAA
1 TATAATATTATTA-ATATAATTAAT-A
113312 TATAATTAATTATTAATATAATTAATA
1 TATAA-T-ATTATTAATATAATTAATA
113339 TATAATATT
1 TATAATATT
113348 TGAATTGCTT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
25 8 0.26
26 2 0.06
27 15 0.48
28 6 0.19
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (25 bp):
TATAATATTATTAATATAATTAATA
Found at i:113330 original size:16 final size:16
Alignment explanation
Indices: 113303--113346 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
113293 ATTATATTTA
113303 TAATA-ATAATATAAT
1 TAATATATAATATAAT
113318 TAAT-TATTAATATAAT
1 TAATATA-TAATATAAT
113334 TAATATATAATAT
1 TAATATATAATAT
113347 TTGAATTGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 5 0.19
16 19 0.73
17 2 0.08
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TAATATATAATATAAT
Found at i:113335 original size:9 final size:9
Alignment explanation
Indices: 113305--113340 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
113295 TATATTTATA
113305 ATAA-TAAT
1 ATAATTAAT
113313 ATAATTAAT
1 ATAATTAAT
113322 -T-ATTAAT
1 ATAATTAAT
113329 ATAATTAAT
1 ATAATTAAT
113338 ATA
1 ATA
113341 TAATATTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
7 6 0.24
8 6 0.24
9 13 0.52
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (9 bp):
ATAATTAAT
Found at i:114286 original size:36 final size:34
Alignment explanation
Indices: 114246--114339 Score: 88
Period size: 36 Copynumber: 2.7 Consensus size: 34
114236 TTAATTAAAG
*
114246 ATAATAATTATAAATATTATTAAA-TATTTACTTATT
1 ATAAT-ATTATAAATATTATTAAATTA-GTA-TTATT
114282 ATAATATTA-AATTATATTATTAAATTAGTATTATT
1 ATAATATTATAA--ATATTATTAAATTAGTATTATT
114317 AT--TATTATATAGATATTATTAAA
1 ATAATATTATA-A-ATATTATTAAA
114340 ATAGAAAATA
Statistics
Matches: 51, Mismatches: 2, Indels: 12
0.78 0.03 0.18
Matches are distributed among these distances:
33 5 0.10
34 14 0.27
35 12 0.24
36 18 0.35
37 2 0.04
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.50
Consensus pattern (34 bp):
ATAATATTATAAATATTATTAAATTAGTATTATT
Found at i:114297 original size:13 final size:13
Alignment explanation
Indices: 114279--114308 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
114269 ATATTTACTT
114279 ATTATAATATTAA
1 ATTATAATATTAA
*
114292 ATTATATTATTAA
1 ATTATAATATTAA
114305 ATTA
1 ATTA
114309 GTATTATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
ATTATAATATTAA
Found at i:114321 original size:20 final size:18
Alignment explanation
Indices: 114260--114337 Score: 56
Period size: 18 Copynumber: 4.3 Consensus size: 18
114250 TAATTATAAA
114260 TATTATTAAATAT-TTACT
1 TATTATTAAATATATTA-T
*
114278 TATTA-TAATATTAAATTA-
1 TATTATTAA-A-TATATTAT
114296 TATTATTAAATTAGTATTAT
1 TATTATTAAA-TA-TATTAT
* *
114316 TATTATTATATAGA-TAT
1 TATTATTAAATATATTAT
114333 TATTA
1 TATTA
114338 AAATAGAAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
17 11 0.22
18 16 0.32
19 11 0.22
20 12 0.24
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (18 bp):
TATTATTAAATATATTAT
Found at i:115359 original size:17 final size:17
Alignment explanation
Indices: 115316--115362 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
115306 ATAATGTATA
115316 TTATAATAAATAAAATT
1 TTATAATAAATAAAATT
* *
115333 TTAATTATAAA-ACAATT
1 TT-ATAATAAATAAAATT
115350 TATATAATAAATA
1 T-TATAATAAATA
115363 GTATATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
17 15 0.62
18 9 0.38
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (17 bp):
TTATAATAAATAAAATT
Found at i:115816 original size:44 final size:42
Alignment explanation
Indices: 115766--115847 Score: 112
Period size: 44 Copynumber: 1.9 Consensus size: 42
115756 AAGACTAATA
*
115766 TATTATAA-AGTTATAATTTAATAATTTAATAAATTATATTGTAT
1 TATTATAATA-TTATAA-TAAATAATTTAA-AAATTATATTGTAT
*
115810 TATTATAATATTATAATAAATAATTTAAACATTATATT
1 TATTATAATATTATAATAAATAATTTAAAAATTATATT
115848 ATTTTAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
42 9 0.26
43 11 0.31
44 14 0.40
45 1 0.03
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (42 bp):
TATTATAATATTATAATAAATAATTTAAAAATTATATTGTAT
Found at i:116067 original size:17 final size:16
Alignment explanation
Indices: 116040--116072 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
116030 AGTTTTTACA
116040 ATTTCAATAATTATTT
1 ATTTCAATAATTATTT
116056 ATTTCAAATAATTATTT
1 ATTTC-AATAATTATTT
116073 GTTTTAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTCAATAATTATTT
Found at i:116446 original size:15 final size:15
Alignment explanation
Indices: 116428--116540 Score: 56
Period size: 15 Copynumber: 7.3 Consensus size: 15
116418 TCAAAATTTA
116428 AATATAATATTAATT
1 AATATAATATTAATT
*
116443 AATAATATTAATTAAATT
1 AAT-ATAAT-ATT-AATT
*
116461 AATTTAA-ATTAAATT
1 AATATAATATT-AATT
*
116476 AATAATAATATTAACAAT
1 AAT-ATAATATT-A-ATT
* *
116494 AATATGAT-TTATGTT
1 AATATAATATTA-ATT
116509 AATA-AA-ATTAATAT
1 AATATAATATTAAT-T
*
116523 AATA-AAAATTAATT
1 AATATAATATTAATT
116537 AATA
1 AATA
116541 ATTTTTCAAA
Statistics
Matches: 78, Mismatches: 11, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
13 1 0.01
14 16 0.21
15 26 0.33
16 9 0.12
17 14 0.18
18 12 0.15
ACGTcount: A:0.56, C:0.01, G:0.02, T:0.42
Consensus pattern (15 bp):
AATATAATATTAATT
Found at i:116728 original size:10 final size:10
Alignment explanation
Indices: 116713--116798 Score: 58
Period size: 10 Copynumber: 9.0 Consensus size: 10
116703 TTATAATCTT
116713 TAATTAATTA
1 TAATTAATTA
116723 TAATTAATTA
1 TAATTAATTA
*
116733 TCA-TATATTA
1 TAATTA-ATTA
* **
116743 T-TTATAACAA
1 TAAT-TAATTA
*
116753 TAATTTATTA
1 TAATTAATTA
*
116763 AAATTAA--A
1 TAATTAATTA
116771 TAATTAA--A
1 TAATTAATTA
116779 TAATTAATTA
1 TAATTAATTA
116789 TAATTAATTA
1 TAATTAATTA
116799 AAGATTATAA
Statistics
Matches: 59, Mismatches: 11, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
8 15 0.25
9 2 0.03
10 39 0.66
11 3 0.05
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (10 bp):
TAATTAATTA
Found at i:116729 original size:14 final size:14
Alignment explanation
Indices: 116712--116799 Score: 69
Period size: 14 Copynumber: 6.6 Consensus size: 14
116702 TTTATAATCT
116712 TTAATTAATTATAA
1 TTAATTAATTATAA
*
116726 TTAATT-ATCATATA
1 TTAATTAATTATA-A
* * *
116740 TT-ATTTATAACAA
1 TTAATTAATTATAA
* *
116753 -TAATTTATTAAAA
1 TTAATTAATTATAA
*
116766 TTAAATAATTA-AA
1 TTAATTAATTATAA
116779 -TAATTAATTATAA
1 TTAATTAATTATAA
116792 TTAATTAA
1 TTAATTAA
116800 AGATTATAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
12 10 0.17
13 22 0.37
14 28 0.47
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (14 bp):
TTAATTAATTATAA
Found at i:117066 original size:34 final size:34
Alignment explanation
Indices: 117015--117093 Score: 110
Period size: 34 Copynumber: 2.4 Consensus size: 34
117005 TATACTAATT
117015 TTATAATTAATTAGTTTAATAATAAATT-ATTAAA
1 TTATAATTAATTAGTTTAATAATAAATTGA-TAAA
*
117049 TTATAATTATATT-GTTTAATATTAAATTGATAAA
1 TTATAATTA-ATTAGTTTAATAATAAATTGATAAA
117083 TTATAA-TAATT
1 TTATAATTAATT
117094 TAAATACATA
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
32 3 0.07
33 2 0.05
34 33 0.79
35 4 0.10
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (34 bp):
TTATAATTAATTAGTTTAATAATAAATTGATAAA
Found at i:117104 original size:23 final size:23
Alignment explanation
Indices: 117078--117143 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
117068 TATTAAATTG
117078 ATAAATTATAATAATTTAAATAC
1 ATAAATTATAATAATTTAAATAC
* *
117101 ATAAACTAAAATAATTTATTAATAC
1 ATAAATTATAATAATTTA--AATAC
117126 AT---TTATAATAA-TTAAATA
1 ATAAATTATAATAATTTAAATA
117144 ATTTATATTA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 4 0.11
21 3 0.08
22 7 0.19
23 16 0.43
25 7 0.19
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (23 bp):
ATAAATTATAATAATTTAAATAC
Found at i:117134 original size:11 final size:10
Alignment explanation
Indices: 117078--117170 Score: 55
Period size: 10 Copynumber: 8.8 Consensus size: 10
117068 TATTAAATTG
*
117078 ATAAATTATA
1 ATAATTTATA
117088 ATAATTTAAATA
1 ATAATTT--ATA
** *
117100 CATAAACTAAA
1 -ATAATTTATA
117111 ATAATTTATTA
1 ATAATTTA-TA
117122 ATACATTTATA
1 ATA-ATTTATA
117133 ATAA-TTA-A
1 ATAATTTATA
117141 ATAATTTATA
1 ATAATTTATA
* *
117151 TTAATATATATT
1 ATAAT-T-TATA
117163 ATAATTTA
1 ATAATTTA
117171 AGAGGTTATT
Statistics
Matches: 64, Mismatches: 10, Indels: 18
0.70 0.11 0.20
Matches are distributed among these distances:
8 5 0.08
9 6 0.09
10 20 0.31
11 13 0.20
12 15 0.23
13 5 0.08
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (10 bp):
ATAATTTATA
Found at i:117145 original size:22 final size:21
Alignment explanation
Indices: 117065--117145 Score: 65
Period size: 22 Copynumber: 3.7 Consensus size: 21
117055 TTATATTGTT
*
117065 TAAT-ATTAAATTGATAAATTA
1 TAATAATTAAA-TAATAAATTA
*
117086 TAATAATTTAAATACATAAACTA
1 TAATAA-TTAAATA-ATAAATTA
* * * *
117109 AAATAATTTATTAATACATTTA
1 TAATAATTAAATAATA-AATTA
117131 TAATAATTAAATAAT
1 TAATAATTAAATAAT
117146 TTATATTAAT
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
21 7 0.15
22 22 0.48
23 17 0.37
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.41
Consensus pattern (21 bp):
TAATAATTAAATAATAAATTA
Found at i:117240 original size:19 final size:21
Alignment explanation
Indices: 117204--117243 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
117194 AATAATATTT
117204 TTATAATTTATCAATTTAATA
1 TTATAATTTATCAATTTAATA
117225 TTATAA-TTAT-AATTTAATA
1 TTATAATTTATCAATTTAATA
117244 ATATTTAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.47
20 4 0.21
21 6 0.32
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (21 bp):
TTATAATTTATCAATTTAATA
Found at i:117259 original size:24 final size:22
Alignment explanation
Indices: 117141--117270 Score: 67
Period size: 24 Copynumber: 5.9 Consensus size: 22
117131 TAATAATTAA
*
117141 ATAATT-TATATTAATATATATT
1 ATAATTATAAATTAATA-ATATT
*
117163 ATAATT-TAAGAGGTTATTAATATT
1 ATAATTATAA-A--TTAATAATATT
* * * *
117187 -TGA-GATAAA-TAATATTTTT
1 ATAATTATAAATTAATAATATT
*
117206 ATAATTTATCAATT--TAATATT
1 ATAA-TTATAAATTAATAATATT
*
117227 ATAATTATAATTTAATAATATTT
1 ATAATTATAAATTAATAATA-TT
*
117250 AATAATTATAAATTATTAATA
1 -ATAATTATAAATTAATAATA
117271 AATGTATGTA
Statistics
Matches: 80, Mismatches: 16, Indels: 22
0.68 0.14 0.19
Matches are distributed among these distances:
19 7 0.09
20 9 0.11
21 9 0.11
22 18 0.22
23 9 0.11
24 23 0.29
25 5 0.06
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (22 bp):
ATAATTATAAATTAATAATATT
Found at i:118551 original size:182 final size:178
Alignment explanation
Indices: 118155--118800 Score: 662
Period size: 182 Copynumber: 3.6 Consensus size: 178
118145 AACATGTTCG
* * * ** **
118155 AATAGTTATGACCTTATGTTTTATGATAAACCAATTGTTTCTATCCATACAAGCTTATTCTGAAT
1 AATAGTTATGACCTTTTGTTTTGTGATAAAACAATTGTTTCTATATATACAAGCTTATTCAAAAT
* *
118220 AAAATAAT--TAAATTTATTAATATTTT-AAAATTTAATAAGTAAAA-ATTTTAAAAATAAATTT
66 AAAATAATACT-AATTTATTAATATTTTGAAAA-TTAATAAGTAAAAGATTTAAAAAATAAATTG
* * * *
118281 TTTTTGAAC-ATGTTCAAATAGATCTGATTATTTGAACAATTATCTATTTCA
129 TTTATG-ACTAAGTTCAAATAGTTAT-ATTATTTGAACAATTATCTATTTCA
* * * *
118332 AATAGTTATGACCTTTTGTTTTGTGATGAACCAATTGTTTCTGTATATATAAGCTTATTCAAAAT
1 AATAGTTATGACCTTTTGTTTTGTGATAAAACAATTGTTTCTATATATACAAGCTTATTCAAAAT
* *
118397 AAAATAATACTAATTTAATAATA-TTCGAACAATTAATAAGTAAAAGATTTAAAAAATAAATATG
66 AAAATAATACTAATTTATTAATATTTTGAA-AATTAATAAGTAAAAGATTTAAAAAATAAAT-TG
* * * * *
118461 TTTACTGACTAAGCTCAAATAGTTATAATTGTTTGAACAATTTTTTTATTTCT
129 TTTA-TGACTAAGTTCAAATAGTTAT-ATTATTTGAACAA-TTATCTATTTCA
* * *
118514 AATAGTTATGATCTTTTGTTTTGTCATAAAACAATTGTTTCTAT-TCATACAAGTTTATTCAAAA
1 AATAGTTATGACCTTTTGTTTTGTGATAAAACAATTGTTTCTATAT-ATACAAGCTTATTCAAAA
* * * **
118578 TAAAATAATACTACTTTATTAATATTTTGCAAATTAATAGGTAGGAGATTTAAAAAATAAATCTG
65 TAAAATAATACTAATTTATTAATATTTTGAAAATTAATAAGTAAAAGATTTAAAAAATAAAT-TG
* * * * * *
118643 TTTATCGAATCAGTTCAAATAGTCATGTCCATTAGAACAATTATCTATTTCA
129 TTTAT-GACTAAGTTCAAATAGTTATAT-TATTTGAACAATTATCTATTTCA
* * * * * *
118695 AATTGTTATGACCTTTTTGTTTTGTTATGAAACAATTTTTTCTGT-TCATACATA-ATTATTCAA
1 AATAGTTATGACC-TTTTGTTTTGTGATAAAACAATTGTTTCTATAT-ATACA-AGCTTATTCAA
** *
118758 AATAAAATAATTTTGATTTATTAATATTTTGAAAATTAATAAG
63 AATAAAATAATACTAATTTATTAATATTTTGAAAATTAATAAG
118801 AGATTTAAAA
Statistics
Matches: 392, Mismatches: 62, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
177 66 0.17
178 26 0.07
179 17 0.04
180 6 0.02
181 49 0.12
182 223 0.57
183 5 0.01
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (178 bp):
AATAGTTATGACCTTTTGTTTTGTGATAAAACAATTGTTTCTATATATACAAGCTTATTCAAAAT
AAAATAATACTAATTTATTAATATTTTGAAAATTAATAAGTAAAAGATTTAAAAAATAAATTGTT
TATGACTAAGTTCAAATAGTTATATTATTTGAACAATTATCTATTTCA
Found at i:118994 original size:67 final size:66
Alignment explanation
Indices: 118884--119021 Score: 147
Period size: 67 Copynumber: 2.1 Consensus size: 66
118874 ATTATTAGTA
* * * *
118884 ATTATTAGGATAATTATAATATTATTAGTATTATAAATTATTAAAATAATTAATA-ACTTTAACT
1 ATTATTAAGATAATAATAATAATATTAGTATTATAAATAATTAAAATAA-TAATATACTTTAAC-
118948 ATT
64 ATT
* * * *
118951 ATTATTAAGATAATAATAATAATGTTA-TAATTA-ATAATAATTAAGATAATAATATAGTTTATC
1 ATTATTAAGATAATAATAATAATATTAGT-ATTATA-AATAATTAAAATAATAATATACTTTAAC
119014 ATT
64 ATT
119017 ATTAT
1 ATTAT
119022 ATCTATTAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
66 15 0.25
67 45 0.75
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (66 bp):
ATTATTAAGATAATAATAATAATATTAGTATTATAAATAATTAAAATAATAATATACTTTAACAT
T
Found at i:120085 original size:16 final size:17
Alignment explanation
Indices: 120064--120109 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
120054 ATGTATTTAA
120064 AATTATTAT-TTATAAT
1 AATTATTATGTTATAAT
120080 AATTA-TATGTTATAAT
1 AATTATTATGTTATAAT
*
120096 TATTATATATGTTA
1 AATTAT-TATGTTA
120110 ATAAATTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 3 0.12
16 16 0.62
18 7 0.27
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.54
Consensus pattern (17 bp):
AATTATTATGTTATAAT
Found at i:120197 original size:15 final size:16
Alignment explanation
Indices: 120179--120212 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
120169 TTAATATTTT
*
120179 AAAAA-TTAAGAAGTA
1 AAAAATTTAAAAAGTA
120194 AAAAATTTAAAAAGTA
1 AAAAATTTAAAAAGTA
120210 AAA
1 AAA
120213 CTATTATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (16 bp):
AAAAATTTAAAAAGTA
Found at i:120422 original size:180 final size:176
Alignment explanation
Indices: 120234--120713 Score: 499
Period size: 180 Copynumber: 2.7 Consensus size: 176
120224 CCAGTTCACT
* * * * *
120234 TAGTTATAACTATTTGAACAATTATTTATTTCAAATCATTATGACCATTTGTATTGTCGTAAAAT
1 TAGTTATAACTATTTGAATAATTATCTATTTCAAATCATTATGACCATTTGTTTTGTCATAAAAC
* *
120299 AATTATTTCTATTCATAC-AGTCTTATTTGAAATAAAGTAATACTAATTTATCAATATTTTGAAA
66 AATTATTTCTATTCATACAAG-CTTATTTGAAATAAA-TAATACTAATTTATTAATATTCT-AAA
* * *
120363 TTAA-TAAGTAATAGATTTAAAAAATGAATCAATTGGCCTG-ACAAGTGCAAA
128 --AATTAA-TAAGAGATTTAAAAAATGAATCAATTGACC-GAACAAGTACAAA
* *
120414 TAGTTATAACTGTTTGAATAATTATCTATTTCAAATCATTATGA-CATTTTGTTTTATCATAAAA
1 TAGTTATAACTATTTGAATAATTATCTATTTCAAATCATTATGACCA-TTTGTTTTGTCATAAAA
* * * *
120478 CAATTGTTTCTA-TCTGTACTAGCTTATTTGAAATAATATAATTA-TATTTTATTAATATTCTAA
65 CAATTATTTCTATTC-ATACAAGCTTATTTGAAATAA-ATAA-TACTAATTTATTAATATTCTAA
* * * *
120541 AAATTAATAAGAGATTTAAAAAATGAATCTATTTATCGAATAAGTACAAA
127 AAATTAATAAGAGATTTAAAAAATGAATCAATTGACCGAACAAGTACAAA
* * * * * * **
120591 TAATTATGACTATTTGAATAATTATCTA-TTCTAATCGTTATAACCTTTTGTTTTGTCCCAAAAC
1 TAGTTATAACTATTTGAATAATTATCTATTTCAAATCATTATGACCATTTGTTTTGTCATAAAAC
* * * *
120655 AA-AATTTTCTATTCATACAAGCTTATTTCAAATAAAATTATACAAATTTATTAATATTC
66 AATTA-TTTCTATTCATACAAGCTTATTTGAAAT-AAATAATACTAATTTATTAATATTC
120714 AGACAACTAA
Statistics
Matches: 251, Mismatches: 37, Indels: 28
0.79 0.12 0.09
Matches are distributed among these distances:
175 2 0.01
176 69 0.27
177 66 0.26
178 3 0.01
179 7 0.03
180 99 0.39
181 5 0.02
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (176 bp):
TAGTTATAACTATTTGAATAATTATCTATTTCAAATCATTATGACCATTTGTTTTGTCATAAAAC
AATTATTTCTATTCATACAAGCTTATTTGAAATAAATAATACTAATTTATTAATATTCTAAAAAT
TAATAAGAGATTTAAAAAATGAATCAATTGACCGAACAAGTACAAA
Found at i:121370 original size:20 final size:20
Alignment explanation
Indices: 121332--121371 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
121322 AATTTATGTT
**
121332 TATATAATTGTTATAATTTA
1 TATATAATTCATATAATTTA
*
121352 TATATAATTCATATTATTTA
1 TATATAATTCATATAATTTA
121372 ATTATAATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (20 bp):
TATATAATTCATATAATTTA
Found at i:121434 original size:18 final size:19
Alignment explanation
Indices: 121403--121453 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
121393 ATTATGTTTG
* *
121403 TAATTATTAATAATTAAAT
1 TAATAATTATTAATTAAAT
*
121422 T-ATAATTATTAATTAACT
1 TAATAATTATTAATTAAAT
121440 TAATAATCTATTAA
1 TAATAAT-TATTAA
121454 GTTATCAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 15 0.56
19 6 0.22
20 6 0.22
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (19 bp):
TAATAATTATTAATTAAAT
Found at i:122130 original size:13 final size:14
Alignment explanation
Indices: 122104--122144 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 14
122094 AATAATTGTT
122104 ATATA-ATA-TATA
1 ATATACATATTATA
122116 ATATACA-ATTATA
1 ATATACATATTATA
122129 AT-TACATATTATA
1 ATATACATATTATA
122142 ATA
1 ATA
122145 ATTAATATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 10 0.40
13 15 0.60
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (14 bp):
ATATACATATTATA
Found at i:122258 original size:18 final size:19
Alignment explanation
Indices: 122235--122270 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
122225 AATTATTATA
122235 ATAAATAGTAA-TAATATT
1 ATAAATAGTAACTAATATT
*
122253 ATAAATATTAACTAATAT
1 ATAAATAGTAACTAATAT
122271 ATGACTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (19 bp):
ATAAATAGTAACTAATATT
Found at i:123026 original size:22 final size:24
Alignment explanation
Indices: 122980--123027 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 24
122970 ATATTAATTT
**
122980 ATTAGTAATTTATTAATAAGTAAA
1 ATTAGTAATTTATTAATAACAAAA
123004 ATTAGT-A-TTATTAATAACAAAA
1 ATTAGTAATTTATTAATAACAAAA
123026 AT
1 AT
123028 ATTTGTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 15 0.68
23 1 0.05
24 6 0.27
ACGTcount: A:0.52, C:0.02, G:0.06, T:0.40
Consensus pattern (24 bp):
ATTAGTAATTTATTAATAACAAAA
Found at i:124451 original size:16 final size:17
Alignment explanation
Indices: 124425--124473 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
124415 TATTATAAAT
*
124425 ATTATAATATATTATT-A
1 ATTA-AATATATAATTAA
124442 ATTAAATATATAATTAA
1 ATTAAATATATAATTAA
124459 ATT-AATATATCAATT
1 ATTAAATATAT-AATT
124474 TTAATTTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 17 0.59
17 12 0.41
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTAAATATATAATTAA
Found at i:124479 original size:18 final size:18
Alignment explanation
Indices: 124439--124498 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
124429 TAATATATTA
124439 TTAATTAAATATAT-AA-T
1 TTAATT-AATATATCAATT
*
124456 TAAATTAATATATCAATT
1 TTAATTAATATATCAATT
*
124474 TTAATTTATA-ATCAAATT
1 TTAATTAATATATC-AATT
*
124492 ATAATTA
1 TTAATTA
124499 TCATAATGTT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
16 7 0.20
17 10 0.29
18 18 0.51
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (18 bp):
TTAATTAATATATCAATT
Found at i:125864 original size:17 final size:16
Alignment explanation
Indices: 125841--125884 Score: 56
Period size: 15 Copynumber: 2.8 Consensus size: 16
125831 TTAAATTGTT
125841 AATATTAATAATAG-AA
1 AATATTAATAAT-GTAA
125857 ATATATTAAT-ATGTAA
1 A-ATATTAATAATGTAA
125873 AATATTAATAAT
1 AATATTAATAAT
125885 TACGATTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 9 0.36
16 8 0.32
17 8 0.32
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.39
Consensus pattern (16 bp):
AATATTAATAATGTAA
Found at i:125882 original size:23 final size:22
Alignment explanation
Indices: 125839--125886 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
125829 TTTTAAATTG
125839 TTAATATTAATAATAGAAATATA
1 TTAATATTAATAATAGAAATA-A
**
125862 TTAATATGTAA-AATATTAATAA
1 TTAATAT-TAATAATAGAAATAA
125884 TTA
1 TTA
125887 CGATTGTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 4 0.18
23 15 0.68
24 3 0.14
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (22 bp):
TTAATATTAATAATAGAAATAA
Found at i:125999 original size:16 final size:17
Alignment explanation
Indices: 125978--126010 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
125968 TAATACTATA
125978 ATATAT-ATTTAAAAAT
1 ATATATAATTTAAAAAT
*
125994 ATATATAATTTATAAAT
1 ATATATAATTTAAAAAT
126011 TTATTAGTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
ATATATAATTTAAAAAT
Found at i:126727 original size:20 final size:20
Alignment explanation
Indices: 126678--126728 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
126668 TTATCATTAA
126678 TAATAATTATTTAACTATAT
1 TAATAATTATTTAACTATAT
* *
126698 TATTATTTATTATAA-TA-ATT
1 TAATAATTATT-TAACTATA-T
126718 TAATAATTATT
1 TAATAATTATT
126729 GAAATATTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
TAATAATTATTTAACTATAT
Found at i:126837 original size:29 final size:30
Alignment explanation
Indices: 126796--126867 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 30
126786 ATAGTTTGAA
*
126796 ATTATAGTAATTAT-TTATATAGTAACTAAC
1 ATTATAATAATTATATT-TATAGTAACTAAC
* *
126826 ATTATAAT-ATTATATTTATAGTAATTAAT
1 ATTATAATAATTATATTTATAGTAACTAAC
*
126855 ATTA-ATTAATTAT
1 ATTATAATAATTAT
126868 TAATATAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 2 0.06
29 25 0.69
30 9 0.25
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.49
Consensus pattern (30 bp):
ATTATAATAATTATATTTATAGTAACTAAC
Found at i:126871 original size:21 final size:22
Alignment explanation
Indices: 126828--126876 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
126818 TAACTAACAT
*
126828 TATAATATTATATTTATAGTAA
1 TATAATATTATATTAATAGTAA
*
126850 T-TAATATTA-ATTAATTATTAA
1 TATAATATTATATTAA-TAGTAA
126871 TATAAT
1 TATAAT
126877 TAATAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 4 0.17
21 14 0.61
22 5 0.22
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
TATAATATTATATTAATAGTAA
Found at i:126876 original size:16 final size:17
Alignment explanation
Indices: 126849--126890 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
126839 ATTTATAGTA
126849 ATTAATATTAATTAATT
1 ATTAATATTAATTAATT
*
126866 ATTAATA-TAATTAATA
1 ATTAATATTAATTAATT
*
126882 AATAATATT
1 ATTAATATT
126891 TGGATTACTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTAATATTAATTAATT
Found at i:127077 original size:34 final size:31
Alignment explanation
Indices: 127039--127109 Score: 85
Period size: 30 Copynumber: 2.3 Consensus size: 31
127029 CTATTTTTAG
127039 AATAAGTTATATCTATTTATTAGTAATTAATATA
1 AATAAGTTATA--TATTTATTAGTAATTAATA-A
*
127073 AATAA-CT-TATATTTATTAGTAATTAATAA
1 AATAAGTTATATATTTATTAGTAATTAATAA
127102 AAT-AGTTA
1 AATAAGTTA
127110 AATTATATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
28 1 0.03
29 5 0.15
30 19 0.58
32 2 0.06
33 1 0.03
34 5 0.15
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.45
Consensus pattern (31 bp):
AATAAGTTATATATTTATTAGTAATTAATAA
Found at i:127273 original size:21 final size:19
Alignment explanation
Indices: 127249--127293 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
127239 TTAACATATA
*
127249 TATTTTTATAGTTATATTAAT
1 TATTTTTAT--TTATATAAAT
*
127270 TATTTTTGTTTATATAAAT
1 TATTTTTATTTATATAAAT
127289 TATTT
1 TATTT
127294 ATTAATAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 14 0.64
21 8 0.36
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.64
Consensus pattern (19 bp):
TATTTTTATTTATATAAAT
Found at i:127307 original size:10 final size:10
Alignment explanation
Indices: 127292--127326 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
127282 TATAAATTAT
127292 TTATTAATAA
1 TTATTAATAA
127302 TTATTAAT-A
1 TTATTAATAA
127311 TT-TTAATAA
1 TTATTAATAA
127320 TTATTAA
1 TTATTAA
127327 AAAGTCATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 5 0.22
9 6 0.26
10 12 0.52
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (10 bp):
TTATTAATAA
Found at i:132290 original size:174 final size:171
Alignment explanation
Indices: 131966--132294 Score: 421
Period size: 174 Copynumber: 1.9 Consensus size: 171
131956 ATAATATAAA
* ** * *
131966 TTTATTAATATTTCAAAAATTAATAAGTAAAAATTTTAAAAAGAAATTTGTTTTTTGAACATGTT
1 TTTATTAATATTCCAAAAATTAATAAGTAAAAATTAAAAAAAGAAATTTGTTTTATG-ACAAGTT
* *
132031 CAAAAAGTTATGACTATTTGAACAATTATCTTTTTCGAATAGTTATGACATTTCATTTCATTATA
65 CAAAAAGTTATGACTATTTGAACAATTATCTTTTTCAAATAGTTATGACATTTCATTTCATCATA
* *
132096 AACCAAATGTTTCTATTCATACAAGCATATTTATAGTACTAG
130 AAACAAATGTTTCAATTCATACAAGCATATTTATAGTACTAG
* *
132138 TTTATTAATATTCCAAAAATTGATAAGTAAAAGAGTTAAAAAAATAAATTTGTTTACTATG-CAA
1 TTTATTAATATTCCAAAAATTAATAAGTAAAA-A-TTAAAAAAAGAAATTTGTTT--TATGACAA
* * ** *
132202 GTTCAAATAGTTATGACTGTTTGAACAATTAT-TTATTTCAAATAGTTATGATC-TTTTGTTTTA
62 GTTCAAAAAGTTATGACTATTTGAACAATTATCTT-TTTCAAATAGTTATGA-CATTTCATTTCA
*
132265 TCATAAAACAATTGTTTCAATTCATACAAG
125 TCATAAAACAAATGTTTCAATTCATACAAG
132295 TTTATTTGGA
Statistics
Matches: 134, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
172 30 0.22
173 3 0.02
174 97 0.72
175 1 0.01
176 3 0.02
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.41
Consensus pattern (171 bp):
TTTATTAATATTCCAAAAATTAATAAGTAAAAATTAAAAAAAGAAATTTGTTTTATGACAAGTTC
AAAAAGTTATGACTATTTGAACAATTATCTTTTTCAAATAGTTATGACATTTCATTTCATCATAA
AACAAATGTTTCAATTCATACAAGCATATTTATAGTACTAG
Found at i:132408 original size:181 final size:181
Alignment explanation
Indices: 130660--133172 Score: 1358
Period size: 180 Copynumber: 13.9 Consensus size: 181
130650 TTCTTAGTAA
* * * * *
130660 CTTATTCAAAATAAAATAA-ATCAAATTTATTAATATTTAAAAAATTAATAAGTATGGGATTTAA
1 CTTATTTAAAATAAAATAATA-CTAATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAA
* * * * * * * *
130724 AAAATAATTTTGTTTGTCAAACCAGTTTAAATAATTATGATTATTTGAACAATTATCTATTTCAA
65 AAAATAAATATGTTTATCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAA
* * * *** *
130789 ATCGTTATGA-CTTTTTCTTTTGTCATAAAACAAATGTTTTTGTTCATATAAG
130 ATAGTTATGATC-TTTTGTTTTGTCATAAAACAATTGTTTCAATTCATACAAG
* ** * * * * *
130841 TTTATTTGGAATAAAATAATATTAA-TCATTCATATTTTGAAAATTAAGAAGTAAGAGATTTAAA
1 CTTATTTAAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAA
* * * * ** * * * * *
130905 GAATAAATTTGTTTA-CTAAACCAGTTCAGTTAGTTATAATTATTTAAACAATTCTTTATTTCAA
66 AAATAAATATGTTTATC-GAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAA
* * * ***
130969 ATCA-TTATGACCATTTGTTTTGTCATAAAATAATTGTTTTTGTTCATAC-AG
130 AT-AGTTATGATCTTTTGTTTTGTCATAAAACAATTGTTTCAATTCATACAAG
*** * * * *
131020 TCTTATTCGGAATAAAGTAATGGCTAATGTATTAAATATTTTGAAAATTCAATAAAGT-AGACGA
1 -CTTATTTAAAATAAAATAAT-ACTAATTTATT-AATATTTTAAAAATT-AAT-AAGTAAGA-G-
* * *** * * * *
131084 ACTTAAAAAATGAATATGTTGGCCTG-ACCAGTGCAAATAGGTTATGATTGTTTGAACTAATTAT
59 ATTTAAAAAATAAATATGTTTATC-GAACAAGTTCAAATA-GTTATGACTATTTGAAC-AATTAT
* * * ** *
131148 CTAATTTCAAA-AGTTATGACCTTTTGTTTTATCACAAAA-AATTGTTTCTAATTTGTAAAAG
121 CT-ATTTCAAATAGTTATGATCTTTTGTTTTGTCATAAAACAATTGTTTC-AATTCATACAAG
* * * * *
131209 CTTA-TTGAAATAACAA-AAT-CTAATTTATTAATATTTCT-TAAA-CAATGAGGTAAGAGGTTT
1 CTTATTTAAAATAA-AATAATACTAATTTATTAATATTT-TAAAAATTAAT-AAGTAAGAGATTT
* * *
131269 AAAAAAATGAACTAT-TTT-TTGAACAAGTTTTTAAATAGTTATGA-TATTTGAACAATTATCTA
63 -AAAAAAT-AAATATGTTTATCGAACAAG--TTCAAATAGTTATGACTATTTGAACAATTATCTA
** * * *
131331 TTTCAAATCA-TTATGA-CTTTTAATTTGTCA-CAAACAATTTTTTCTATCTCATACAAG
124 TTTCAAAT-AGTTATGATCTTTTGTTTTGTCATAAAACAATTGTTTCAAT-TCATACAAG
* * * * * * *
131388 CCTATTT-CAATAAAATTATACAAATTTATTAATA-TTTAGACATTTAATAAGTAAAAGATTTAA
1 CTTATTTAAAATAAAATAATACTAATTTATTAATATTTTA-AAAATTAATAAGTAAGAGATTT-A
* * * * * * ** *
131451 AAAAGATAAATTTGTTTAACCAAATCAAGTTCAAAAAGTCATAAAAACTGTTGAAACAATTATTT
64 AAAA-ATAAATATGTTT-ATCGAA-CAAGTTCAAATAGTTATGACTA-T-TTG-AACAATTATCT
* * * * *
131516 ATTTTCAACTA-TTATGAACATTTTGTTTTATCATAAAACAACTGTTT--TTCTCATACAAG
123 A-TTTCAAATAGTTATGATC-TTTTGTTTTGTCATAAAACAATTGTTTCAAT-TCATACAAG
** * * * * * * * * * *
131575 CTTAATTTGGATTAAAATAATATTATTTTTTTAATATTTTGACAACTAAT-AGTAAAAGTTTTTA
1 CTT-ATTTAAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAA
* * * *
131639 AAAATAAATATATTTA-CTAAACAAGTTTTC-AATAGTCATAACTATTTGAGTA-AATTATCTAT
65 AAAATAAATATGTTTATC-GAACAAG--TTCAAATAGTTATGACTATTTGA--ACAATTATCTAT
* * ** * * * * *
131701 TT---ATCA-TTTTGAACTTTTGTTTCATCCTAATACCAATTGTATCAATTCATATAGG
125 TTCAAAT-AGTTATGATCTTTTGTTTTGTCATAA-AACAATTGTTTCAATTCATACAAG
* * ** * *
131756 C-TAATTCAAATAAAAT-ATAC-AATTTATTAAATATTCCAAAAAATAATGA-TAAGAGATTTAA
1 CTTATTTAAAATAAAATAATACTAATTTATT-AATATTTTAAAAATTAATAAGTAAGAGATTTAA
* * *
131817 AATGAA-AACTAT-TTTTTGGAAAAGCAAAGTTCAAATAGTTATGACTAATTTG-ACAATTTAAT
65 AA--AATAAATATGTTTATCG--AA-C-AAGTTCAAATAGTTATGACT-ATTTGAACAA-TT-AT
* * ** * **
131879 CTATTTCAAATCGTTATGACCTTTTGGTTTTGTCATAAAACAATCATTCCTGTTCATACAAG
121 CTATTTCAAATAGTTATGATCTTTT-GTTTTGTCATAAAACAATTGTTTCAATTCATACAAG
* ** * * *
131941 TTTATTTTGAATAAAATAATA-TAAATTTATTAATATTTCAAAAATTAATAAGTAA-AAATTTTA
1 CTTATTTAAAATAAAATAATACT-AATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAA
* * * * * * * *
132004 AAAAGAAATTTGTTTTTTGAACATGTTCAAAAAGTTATGACTATTTGAACAATTATCTTTTTCGA
65 AAAATAAATATGTTTATCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAA
** ** * * * *
132069 ATAGTTATGA-CATTTCATTTCATTATAAACCAAATGTTTCTATTCATACAAG
130 ATAGTTATGATC-TTTTGTTTTGTCATAAAACAATTGTTTCAATTCATACAAG
* * * ** * * *
132121 CATA-TT----T---ATAGTACTAGTTTATTAATATTCCAAAAATTGATAAGTAAAAGAGTTAAA
1 CTTATTTAAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGTAAGAGA-TTTAA
* * * * *
132178 AAAATAAATTTGTTTA-CTATGCAAGTTCAAATAGTTATGACTGTTTGAACAATTATTTATTTCA
65 AAAATAAATATGTTTATCGA-ACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCA
*
132242 AATAGTTATGATCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATACAAG
129 AATAGTTATGATCTTTTGTTTTGTCATAAAACAATTGTTTCAATTCATACAAG
* ** * * * **
132295 TTTATTTGGAATAAAACAATACTAATTTATTAATATTTTGAAAATTAATAGGTTGGAGATTTAAA
1 CTTATTTAAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAA
* * * * *
132360 AAATAAATATGTTTATCGAACAAGTTCAAATAATCATGTCCATTTGAACAATTATCTATTTTAAA
66 AAATAAATATGTTTATCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAA
* * * * *
132425 TCGTTATGGTCTTTTGTTTAGTCATAAAACAATCTATTT--ATGCA-A-AA-
131 TAGTTATGATCTTTTGTTTTGTCATAAAACAAT-TGTTTCAATTCATACAAG
*** * * * *
132472 -TT-GGCAAAATAAAATAATATTGATCTATTAATATTTTGAAAATTAAT-A--AA-AGATTTAAA
1 CTTATTTAAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAA
* * * *
132531 AACTAAATCTATTTA-CGAAAATAGTTCAAATAGTTATGACTATTTGAACAATTATCTATCTT-A
66 AAATAAATATGTTTATCGAACA-AGTTCAAATAGTTATGACTATTTGAACAATTATCTAT-TTCA
* * * * * *
132594 AATCA-TTATGAT-ATTTATTTTGTCATAAAATAATTGTTTC-TTTCCCTACATG
129 AAT-AGTTATGATCTTTTGTTTTGTCATAAAACAATTGTTTCAATT-CATACAAG
* ** * **
132646 CTTATTCAGATTTTAAAATAATACTAATTTAATAATATTCCAAAAA-T--TAA-TAAGAGATTTA
1 CTTATTTA-A-AATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTT-
** * * * * * *
132707 AAAAAATAAATATGTTTGCCGAACTAGTTCAAATAGTTAAGACTATTAGAACAGTTATATATTTT
63 AAAAAATAAATATGTTTATCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTC
* * * * * * * *
132772 AAATCA-TTCT-AACCTTTGTTTAGTCATAAAACAATTATTTTAGTTCATATAAG
128 AAAT-AGTTATGATCTTTTGTTTTGTCATAAAACAATTGTTTCAATTCATACAAG
* * *
132825 CTTATTTAAAATAAAATAATACTAATTTATTAACATTTGAAAAATTAATGAGTAAGAGATTTAAA
1 CTTATTTAAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAA
* * * * * *
132890 AATATAAATTTGTTTA-CTGAACAATTTTAAATAGTT-TGACTATTTGAACAATTTTTTAGTT-A
66 AA-ATAAATATGTTTATC-GAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCA
* * * * * * *
132952 AAGTCA-TTATGACCTTTTATTTTGTAATAAAGACAATTGTTTTAGTTCATAAAAA
129 AA-T-AGTTATGATCTTTTGTTTTGTCATAAA-ACAATTGTTTCAATTCATACAAG
** ** * * * *
133007 CTTATACAAAATAAAATAATACTGTTTTACTAATATTTCAAAAATTAATAAGCAAGATATTTAAA
1 CTTATTTAAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAA
* * * * * * *
133072 AACTAAAGT-TGTTT-TCAAACCAGTTCAAATAGTTATGACCATTTAAACAAATATCAATCTT-A
66 AAATAAA-TATGTTTATCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTAT-TTCA
*
133134 AATAGTTTATGATC-TTTGTTTTCTCATAAAACAATTGTT
129 AATAG-TTATGATCTTTTGTTTTGTCATAAAACAATTGTT
133173 AATAATTTAA
Statistics
Matches: 1803, Mismatches: 389, Indels: 281
0.73 0.16 0.11
Matches are distributed among these distances:
169 4 0.00
170 24 0.01
171 65 0.04
172 37 0.02
173 5 0.00
174 100 0.06
175 43 0.02
176 5 0.00
177 39 0.02
178 77 0.04
179 177 0.10
180 313 0.17
181 264 0.15
182 195 0.11
183 63 0.03
184 28 0.02
185 64 0.04
186 82 0.05
187 94 0.05
188 74 0.04
189 47 0.03
190 3 0.00
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (181 bp):
CTTATTTAAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGTAAGAGATTTAAA
AAATAAATATGTTTATCGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAA
TAGTTATGATCTTTTGTTTTGTCATAAAACAATTGTTTCAATTCATACAAG
Found at i:132830 original size:179 final size:175
Alignment explanation
Indices: 130660--134950 Score: 1064
Period size: 180 Copynumber: 23.9 Consensus size: 175
130650 TTCTTAGTAA
* * *
130660 CTTATTCAAAATAAAATAA-ATCAAATTTATTAATATTTAAAAAATTAATAAGTATGGGATTT-A
1 CTTATTCAAAATAAAATAATA-CTAATTTAATAATATTTCAAAAATTAATAAG-A---GATTTAA
* * * * * * * *
130723 AAAAATAATTTTGTTTGTCAAACCAGTTTAAATAATTATGATTATTTGAACAATTATCTAT-TTC
61 AAAAATAA-ATTGTTT-CCGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATATATCTT-
* * * * * *
130787 AAATCGTTATGACTTTTTCTTTTGTCATAAAACAAATGTTTTTGTTCATATAAG
123 AAATCATTATGAC-CTTTATTTTGTCATAAAACAATTGTTTTAGTTCATAAAAG
* *** * * * * **
130841 TTTATTTGGAATAAAATAATATTAA-TCATTCATATTTTGAAAATTAAGAAGTAAGAGATTT-AA
1 CTTATTCAAAATAAAATAATACTAATTTAATAATATTTCAAAAATT---AA-TAAGAGATTTAAA
* ** * ** * * * * *
130904 AGAATAAATTTGTTTACTAAACCAGTTCAGTTAGTTATAATTATTTAAACAATTCTTTAT-TTCA
62 AAAATAAA-TTGTTT-CCGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATATATCTT-A
* * * *
130968 AATCATTATGACCATTTGTTTTGTCATAAAATAATTGTTTTTGTTCAT-ACAG
124 AATCATTATGACC-TTTATTTTGTCATAAAACAATTGTTTTAGTTCATAAAAG
** * * * * **
131020 TCTTATTCGGAATAAAGTAATGGCTAATGTATTAAATATTTTGAAAATTCAATAAAGTAGACGAA
1 -CTTATTCAAAATAAAATAAT-ACTAATTTAAT-AATATTTCAAAAATT-AAT--A--AGA-G-A
* * * * * * *
131085 CTT-AAAAAATGAATATGTTGGCCTG-ACCAGTGCAAATAGGTTATGATTGTTTGAACTAATTAT
56 TTTAAAAAAATAAAT-TGTT-TCC-GAACTAGTTCAAATA-GTTATGACTATTTGAAC-AATTAT
* * * * * **
131148 CTAAT-TTCAAA--AGTTATGACCTTTTGTTTTATCACAAAA-AATTGTTTCTAATTTGTAAAAG
116 AT-ATCTT-AAATCA-TTATGACC-TTTATTTTGTCATAAAACAATTGTTT-TAGTTCATAAAAG
* * * * *
131209 CTTATT-GAAATAACAA-AAT-CTAATTTATTAATATTTCTTAAACAATGAGGTAAGAGGTTTAA
1 CTTATTCAAAATAA-AATAATACTAATTTAATAATATTTC--AAA-AATTA-ATAAGAGATTTAA
* * * *
131271 AAAAATGAACTATT-TTT-TGAACAAGTTTTTAAATAGTTATGA-TATTTGAACAATTATCTAT-
61 AAAAAT-AA--ATTGTTTCCGAACTAG--TTCAAATAGTTATGACTATTTGAACAATTATATATC
* * * * *
131332 TTCAAATCATTATGACTTTTAATTTGTCA-CAAACAATTTTTTCTA-TCTCATACAAG
121 TT-AAATCATTATGACCTTTATTTTGTCATAAAACAATTGTTT-TAGT-TCATAAAAG
* * * * * *
131388 CCTATTTC--AATAAAATTATACAAATTTATTAATATTT-AGACATTTAATAAGTAAAAGATTTA
1 CTTA-TTCAAAATAAAATAATACTAATTTAATAATATTTCA-AAAATTAATAAG----AGATTTA
* * * * * ** *
131450 AAAAAGATAAATTTGTTTAACCAAATCAAGTTCAAAAAGTCATAAAAACTGTTGAAACAATTATT
60 AAAAA-ATAAA-TTGTTT--CCGAA-CTAGTTCAAATAGTTATGACTA-T-TTG-AACAATTATA
* * * * * * *
131515 TATTTTCAA-CTATTATGAACATTTTGTTTTATCATAAAACAACTGTTTT--TCTCATACAAG
117 TATCTTAAATC-ATTATG-AC-CTTTATTTTGTCATAAAACAATTGTTTTAGT-TCATAAAAG
*** * * * ** * * * **
131575 CTTAATTTGGATTAAAATAATATTATTTTTTTAATATTTTGACAACTAA-TAGTAAAAG-TTTTT
1 CTT-ATTCAAAATAAAATAATACTAATTTAATAATA-TTT--CAA-AAATTAATAAGAGATTTAA
* ** * * * *
131638 AAAAATAAATATATTTACTAAACAAGTTTTC-AATAGTCATAACTATTTGAGTA-AATTATCTAT
61 AAAAATAAAT-TGTTT-CCGAACTAG--TTCAAATAGTTATGACTATTTGA--ACAATTATATAT
* * * * * * * * * *
131701 -TT--ATCATTTTGAACTTT-TGTTTCATCCTAATACCAATTGTATCAATTCATATAGG
120 CTTAAATCATTATGACCTTTAT-TTT-GTCATAA-AACAATTGTTTTAGTTCATAAAAG
* * * *
131756 CTAATTC-AAATAAAAT-ATAC-AATTTATTAAATATTCCAAAAAATAATGATAAGAGATTTAAA
1 CTTATTCAAAATAAAATAATACTAATTTAAT-AATATTTC-AAAAAT--TAATAAGAGATTTAAA
* ** * *
131818 ATGAAA-ACTATT-TTTTGGAAAAGCAAAGTTCAAATAGTTATGACTAATTTG-ACAATTTAATC
62 A--AAATA-AATTGTTTCCG--AA-C-TAGTTCAAATAGTTATGACT-ATTTGAACAA-TT-ATA
* * ** * *
131880 TAT-TTCAAATCGTTATGACCTTTTGGTTTTGTCATAAAACAATCATTCCT-GTTCATACAAG
117 TATCTT-AAATCATTATGACC-TTT-ATTTTGTCATAAAACAATTGTT-TTAGTTCATAAAAG
* *** * *
131941 TTTATTTTGAATAAAATAATA-TAAATTTATTAATATTTCAAAAATTAATAAGTAAAAATTTTAA
1 CTTATTCAAAATAAAATAATACT-AATTTAATAATATTTCAAAAATTAATAAG---AGA-TTTAA
* * ** * * *
132005 AAAGA-AATTTGTTTTTTGAAC-ATGTTCAAAAAGTTATGACTATTTGAACAATTATCT-TTTTC
61 AAAAATAAATTG-TTTCCGAACTA-GTTCAAATAGTTATGACTATTTGAACAATTATATATCTT-
* * ** * * * *
132067 GAAT-AGTTATGACATTTCATTTCATTATAAACCAAATGTTTCTA-TTCATACAAG
123 AAATCA-TTATGACCTTT-ATTTTGTCATAAAACAATTGTTT-TAGTTCATAAAAG
* * * * * * *
132121 CATATT-----T---ATAGTACTAGTTTATTAATATTCCAAAAATTGATAAGTAAAAGAGTTAAA
1 CTTATTCAAAATAAAATAATACTAATTTAATAATATTTCAAAAA-T--TAA-TAAGAGATTTAAA
* * * * * *
132178 AAAATAAATTTGTTTACTATGCAAGTTCAAATAGTTATGACTGTTTGAACAATTATTTAT-TTCA
62 AAAATAAA-TTGTTTCCGA-ACTAGTTCAAATAGTTATGACTATTTGAACAATTATATATCTT-A
* * * * * *
132242 AAT-AGTTATGATCTTTTGTTTTATCATAAAACAATTGTTTCAATTCATACAAG
124 AATCA-TTATGA-CCTTTATTTTGTCATAAAACAATTGTTTTAGTTCATAAAAG
* *** * * ** *
132295 TTTATTTGGAATAAAACAATACTAATTTATTAATATTTTGAAAATTAATAGGTTGGAGATTT-AA
1 CTTATTCAAAATAAAATAATACTAATTTAATAATATTTCAAAAATTAATA----AGAGATTTAAA
* * * * * * * *
132359 AAAATAAATATGTTTATCGAACAAGTTCAAATAATCATGTCCATTTGAACAATTATCTATTTTAA
62 AAAATAAAT-TGTTT-CCGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATATATCTTAA
* ** * *
132424 ATCGTTATGGTCTTT-TGTTTAGTCATAAAACAATCT-ATTTA-TGC--AAAA-
125 ATCATTATGACCTTTAT-TTT-GTCATAAAACAAT-TGTTTTAGTTCATAAAAG
** * * * * ** * *
132472 -TT-GGCAAAATAAAATAATATTGATCTATTAATATTTTGAAAATTAATAAAAGATTT-AAAAAC
1 CTTATTCAAAATAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAGAGATTTAAAAAAA
* * * *
132534 TAAATCTATTTACGAAAATAGTTCAAATAGTTATGACTATTTGAACAATTATCTATCTTAAATCA
66 TAAAT-TGTTTCCG-AACTAGTTCAAATAGTTATGACTATTTGAACAATTATATATCTTAAATCA
** * * * *
132599 TTATGATATTTATTTTGTCATAAAATAATTGTTTCT--TTCCCTACATG
129 TTATGACCTTTATTTTGTCATAAAACAATTGTTT-TAGTT-CATAAAAG
** *
132646 CTTATTCAGATTTTAAAATAATACTAATTTAATAATATTCCAAAAATTAATAAGAGATTTAAAAA
1 CTTATTCA-A-AATAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAGAGATTTAAAAA
* * * *
132711 AATAAATATGTTTGCCGAACTAGTTCAAATAGTTAAGACTATTAGAACAGTTATATATTTTAAAT
64 AATAAAT-TGTTT-CCGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATATATCTTAAAT
* * * * * *
132776 CATTCTAACCTTTGTTTAGTCATAAAACAATTATTTTAGTTCATATAAG
127 CATTATGACCTTTATTTTGTCATAAAACAATTGTTTTAGTTCATAAAAG
* * * *
132825 CTTATTTAAAATAAAATAATACTAATTTATTAACATTTGAAAAATTAATGAGTAAGAGATTTAAA
1 CTTATTCAAAATAAAATAATACTAATTTAATAATATTTCAAAAATT-A--A-TAAGAGATTTAAA
* * * * * * * *
132890 AATATAAATTTGTTTACTGAACAATTTTAAATAGTT-TGACTATTTGAACAATTTTTTA-GTTAA
62 AAAATAAA-TTGTTT-CCGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATATATCTTAA
* *
132953 AGTCATTATGACCTTTTATTTTGTAATAAAGACAATTGTTTTAGTTCATAAAAA
125 A-TCATTATGACC-TTTATTTTGTCATAAA-ACAATTGTTTTAGTTCATAAAAG
* ** * *
133007 CTTATACAAAATAAAATAATACTGTTTTACTAATATTTCAAAAATTAATAAGCAAGATATTTAAA
1 CTTATTCAAAATAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAG--AGAT-TTAAAA
* * * * * * *
133072 AACTAAAGTTGTTTTCAAACCAGTTCAAATAGTTATGACCATTTAAACAAATATCA-ATCTTAAA
63 AAATAAA-TTGTTTCCGAACTAGTTCAAATAGTTATGACTATTTGAACAATTAT-ATATCTTAAA
* * * * *
133136 T-AGTTTATGATCTTTGTTTTCTCATAAAACAATTGTTAATAATT--TAAAA-
126 TCA--TTATGACCTTTATTTTGTCATAAAACAATTGTT-TTAGTTCATAAAAG
* * * * * * ** *
133185 --TA-TC-GAATAAAATGATATTAATCTAAT--TA-TTAATAAAACTATATATTA-ATATT-AAC
1 CTTATTCAAAATAAAATAATACTAATTTAATAATATTTCA-AAAATTA-ATAAGAGAT-TTAAAA
* * *** ** * ** * * *
133241 ATATTAATATAAATGGGAGCT--TT-TTATTGTT-T-A--A-TTGAAACAA-TATTAAAACATTA
63 AAATAAAT-TGTTTCCGAACTAGTTCAAATAGTTATGACTATTTG-AACAATTA-TATATC-TTA
* * * *
133297 AAT-ATATAATG--C-TTATTTCGTTC-T-----TATTGTTTTATTATATAATAAATATTG
124 AATCAT-T-ATGACCTTTATTTTG-TCATAAAACAATTGTTTTA--GT-TCATAAA-A--G
* * * * * ** * *
133348 ATTATT-AGATAATTAATATTAATAATTAATTTTAATATAAATAATC-ATTATTAAT-TGATTAT
1 CTTATTCA-A-AA-TAA-AATAAT-ACTAA-TTTAATA-ATAT-TTCAAAAATTAATAAGA-GAT
*** * * ** *** * * * * *
133410 TTAATATTGATTATTTAATT-ATTATTAAGCTCAAATAGTTATAACTATTTGAACAATTTTTTAT
57 TTAA-AAAAATAAATTGTTTCCGAACT-AGTTCAAATAGTTATGACTATTTGAACAATTATATAT
* * * * *
133474 -TTCTAAT-AGTTATGATCTTTTGTTTTGTCATAAAAAAATTGTTTCTA-TTCATACAAG
120 CTT-AAATCA-TTATGA-CCTTTATTTTGTCATAAAACAATTGTTT-TAGTTCATAAAAG
* * * * ***
133531 TTTATTCAAAATAAAATAAAACTACTTTATTAATATTTTGCAAATTAATAGGTAGGAGATTT--A
1 CTTATTCAAAATAAAATAATACTAATTTAATAATATTTCAAAAATTAATA---A-GAGATTTAAA
* * * *
133594 AAAATAAATATGTTTATCGAACAAGTTCAAATAGTTATGTCTATTAGAACAATTA-ACTAT-TTC
62 AAAATAAAT-TGTTT-CCGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATA-TATCTT-
** *
133657 AAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATATAGAA-
123 AAATCATTATGACC-TTTATTTTGTCATAAAACAATTGTTT-TAGTTCATA-A-AAG
** * * * **
133712 -TTATTCAAAATAAAATAATTTTGATTTATTAATATTTTAAAAATTAATAAGAGATTT-AAAACC
1 CTTATTCAAAATAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAGAGATTTAAAAAAA
* ** * * * *
133775 TAAATCTATTTACTAAACCAGTTCAAATAGTTATGGCTATTTGAACAATTATCTATCTCAAATCA
66 TAAAT-TGTTT-CCGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATATATCTTAAATCA
* * * * *** *
133840 TAATGATCTTTATTTTGTCGTACAACAATTGTTTCCTTTCATACAAG
129 TTATGACCTTTATTTTGTCATAAAACAATTGTTTTAGTTCATAAAAG
* * * * *
133887 TTTATTCAGATTAATATGATACTAATTTAATAATATTTCAAAAATTAATAAGAGATTT-AAAAAA
1 CTTATTCAAAATAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAGAGATTTAAAAAAA
* * ** * *
133951 TAAATATGTTAGCCGAACTAGTTCAAATAGTTAAGACTATCAGAATAATTATCTAT-TTCAAATC
66 TAAAT-TGTT-TCCGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATATATCTT-AAATC
* * * *
134015 ATTCT-ATCCTTTTGTTTTGTCATAAAACAATTATTTTAGTTCATACAAG
128 ATTATGA-CC-TTTATTTTGTCATAAAACAATTGTTTTAGTTCATAAAAG
*** * * * *
134064 CTTATTTGGAATAAAATAATACTAATTTATTAACA-TTCAAAAAATTAAAGCAAGACATTTAAAA
1 CTTATTCAAAATAAAATAATACTAATTTAATAATATTTC-AAAAATT-AA-TAAGAGATTTAAAA
* ** * * * * * * *
134128 AAATAAATCTATTTATTGAACAATTTTAAATAGATATGACTA-TTAAACAATTATCTGT-TTAAA
63 AAATAAAT-TGTTT-CCGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATATATCTT-AA
* * * * * * * * *
134191 ATTATTTTGACATTTTGTTTTATCATAAAACAATTGTTTCAATTAATAAAAA
125 ATCATTATGAC-CTTTATTTTGTCATAAAACAATTGTTTTAGTTCATAAAAG
* ** * * *
134243 CTTATCTCAAAATAAAATAGTACTGCTTTATTAATATTCCAAAAATTATTAAGCAAGAGATTT-A
1 CTTAT-TCAAAATAAAATAATACTAATTTAATAATATTTC-AAAA--ATTAA-TAAGAGATTTAA
* * ** * * * *
134307 AAAACTAAAGCTGTTTTTCAAAAC-AGTTCTAATAGTTATGACTATTTGAATAAATAT-TAAGCT
61 AAAAATAAA--T-TGTTTCCGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATAT-ATCT
* * * * *
134370 TAAA-CTGTTATGATCTTTGTTTTGTCATAAAACAATTGTTTT-TTATCATATAAG
122 TAAATC-ATTATGACCTTTATTTTGTCATAAAACAATTGTTTTAGT-TCATAAAAG
* * *
134424 -TTGATTC-AGATAAAAATAATACTAATTTAATAATATTTTGAAAATTAATAAGTAAGAGATTT-
1 CTT-ATTCAAAAT-AAAATAATACTAATTTAATAATA-TTTCAAAA--ATTAA-TAAGAGATTTA
* * * * * *
134486 AAAAAATAAATGTGTTTGCC-AA-TCAGTTCAAATAATTAAGATTATTAGAATAATTATCTAT-T
60 AAAAAATAAAT-TGTTT-CCGAACT-AGTTCAAATAGTTATGACTATTTGAACAATTATATATCT
* * * * * *
134548 TCAAATCGTTCTGACCTTT-TGTTTAATCATAAAATAATTGTTTCAGTTCATACAAG
122 T-AAATCATTATGACCTTTAT-TTT-GTCATAAAACAATTGTTTTAGTTCATAAAAG
* * * * * *
134604 CTTATTCGAAAGAAAATAATACTAATTTATTAACT-TTTGAAAGATTAATAAGCAAGATATTTGA
1 CTTATTCAAAATAAAATAATACTAATTTAATAA-TATTTCAAAAATTAATAAG--AG--ATTTAA
** ** * * *
134668 AAAGCTAAATTTGTTTATTGAACAAGTTCAAATAGTTATGACTATTTAAACAATTATCTAT-TTA
61 AAAAATAAA-TTGTTT-CCGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATATATCTT-
* ** * *
134732 AAATCATTGTGAATTTTTGTTTTGTCATAAAACAATTGTTTTAGTTCACAAAAAG
123 AAATCATTATG-ACCTTTATTTTGTCATAAAACAATTGTTTTAGTTCA-TAAAAG
* * * **
134787 TTTATCCAAAATAAAATAATACTACTTTTCTTAATATTTTCAAAAA-T--TAAGAGATTT-AAAA
1 CTTATTCAAAATAAAATAATACTA-ATTTAATAATA-TTTCAAAAATTAATAAGAGATTTAAAAA
* * * * * * * *
134848 AATAAATAAGTTTACTAACTTAGTTTAAATAATTATGGCCATTTGAACAATTATCTAT-TTCAAA
64 AATAAAT-TGTTTCCGAAC-TAGTTCAAATAGTTATGACTATTTGAACAATTATATATCTT-AAA
* ** *
134912 TCGTTATTTCCTTTCATTTTGTCATAAAAAAATTGTTTT
126 TCATTATGACCTTT-ATTTTGTCATAAAACAATTGTTTT
134951 TCAATATATA
Statistics
Matches: 3090, Mismatches: 693, Indels: 658
0.70 0.16 0.15
Matches are distributed among these distances:
154 2 0.00
155 6 0.00
156 2 0.00
157 1 0.00
159 4 0.00
160 7 0.00
161 9 0.00
162 10 0.00
163 10 0.00
164 1 0.00
165 3 0.00
166 6 0.00
167 2 0.00
168 3 0.00
169 14 0.00
170 26 0.01
171 85 0.03
172 46 0.01
173 18 0.01
174 104 0.03
175 67 0.02
176 177 0.06
177 262 0.08
178 114 0.04
179 312 0.10
180 605 0.20
181 363 0.12
182 282 0.09
183 120 0.04
184 50 0.02
185 74 0.02
186 91 0.03
187 83 0.03
188 70 0.02
189 48 0.02
190 5 0.00
192 6 0.00
193 2 0.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (175 bp):
CTTATTCAAAATAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAGAGATTTAAAAAAA
TAAATTGTTTCCGAACTAGTTCAAATAGTTATGACTATTTGAACAATTATATATCTTAAATCATT
ATGACCTTTATTTTGTCATAAAACAATTGTTTTAGTTCATAAAAG
Found at i:133020 original size:177 final size:174
Alignment explanation
Indices: 132510--133106 Score: 382
Period size: 179 Copynumber: 3.3 Consensus size: 174
132500 TAATATTTTG
* * * * * *
132510 AAAATTAATAAAAGATTT-AAAAACTAAATCTATTTA-CGAAAATAGTTCAAATAGTTATGACTA
1 AAAATTAATAAGAGATTTAAAAAAATAAATATGTTTACCGAACA-AGTTCAAATAGTTAAGACTA
* * * * ** * * * *
132573 TTTGAACAATTATCTATCTTAAATCATTATGATATTTATTTTGTCATAAAATAATTGTTTCT--T
65 TTAGAACAATTATATATGTTAAATCATTATAACCTTTATTTAGTAATAAAACAATTATTT-TAGT
* * ** * *
132636 TCCCTACATGCTTATTCAGATTTTAAAATAATACTAATTTAATAATATTCCA
129 T-CATAAAAACTTATT-A-A---CAAAATAATACTAATTTAATAACATTCCA
* *
132688 AAAATTAATAAGAGATTTAAAAAAATAAATATGTTTGCCGAACTAGTTCAAATAGTTAAGACTAT
1 AAAATTAATAAGAGATTTAAAAAAATAAATATGTTTACCGAACAAGTTCAAATAGTTAAGACTAT
* * * * *
132753 TAGAACAGTTATATATTTTAAATCATTCTAACCTTTGTTTAGTCATAAAACAATTATTTTAGTTC
66 TAGAACAATTATATATGTTAAATCATTATAACCTTTATTTAGTAATAAAACAATTATTTTAGTTC
* * * * **
132818 ATATAAGCTTATTTAAAATAAAATAATACTAATTTATTAACATTTGA
131 ATAAAAACTTA-TT--AACAAAATAATACTAATTTAATAACATTCCA
* * * * * *
132865 AAAATTAATGAGTAAGAGATTTAAAAATATAAATTTGTTTACTGAACAATTTTAAATAGTT-TGA
1 AAAATT-A--A-TAAGAGATTTAAAAAAATAAATATGTTTACCGAACAAGTTCAAATAGTTAAGA
* * * * * *
132929 CTATTTGAACAATTTTTTA-GTTAAAGTCATTATGACCTTTTATTTTGTAATAAAGACAATTGTT
62 CTATTAGAACAATTATATATGTTAAA-TCATTATAACC-TTTATTTAGTAATAAA-ACAATTATT
* * ** * * *
132993 TTAGTTCATAAAAACTTATACAAAATAAAATAATACTGTTTTACTAATATTTCA
124 TTAGTTCATAAAAACTTAT---TAACAAAATAATACTAATTTAATAACATTCCA
* * * * *
133047 AAAATTAATAAGCAAGATATTTAAAAACTAAAGT-TGTTT-TCAAACCAGTTCAAATAGTTA
1 AAAATTAATAAG--AGAT-TTAAAAAAATAAA-TATGTTTACCGAACAAGTTCAAATAGTTA
133107 TGACCATTTA
Statistics
Matches: 334, Mismatches: 64, Indels: 39
0.76 0.15 0.09
Matches are distributed among these distances:
177 31 0.09
178 23 0.07
179 96 0.29
180 54 0.16
181 73 0.22
182 57 0.17
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.39
Consensus pattern (174 bp):
AAAATTAATAAGAGATTTAAAAAAATAAATATGTTTACCGAACAAGTTCAAATAGTTAAGACTAT
TAGAACAATTATATATGTTAAATCATTATAACCTTTATTTAGTAATAAAACAATTATTTTAGTTC
ATAAAAACTTATTAACAAAATAATACTAATTTAATAACATTCCA
Found at i:133354 original size:21 final size:21
Alignment explanation
Indices: 133328--133367 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
133318 TCTTATTGTT
*
133328 TTATTATATAATAAATATTGA
1 TTATTAGATAATAAATATTGA
*
133349 TTATTAGATAATTAATATT
1 TTATTAGATAATAAATATT
133368 AATAATTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (21 bp):
TTATTAGATAATAAATATTGA
Found at i:133374 original size:13 final size:13
Alignment explanation
Indices: 133350--133384 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
133340 AAATATTGAT
133350 TATTAGATAATTAA
1 TATTA-ATAATTAA
133364 TATTAATAATTAA
1 TATTAATAATTAA
*
133377 TTTTAATA
1 TATTAATA
133385 TAAATAATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (13 bp):
TATTAATAATTAA
Found at i:133375 original size:21 final size:20
Alignment explanation
Indices: 133330--133392 Score: 56
Period size: 21 Copynumber: 3.1 Consensus size: 20
133320 TTATTGTTTT
* * *
133330 ATTATATAATAAATATTGATT
1 ATTA-ATAATTAATATTAATA
133351 ATTAGATAATTAATATTAATA
1 ATTA-ATAATTAATATTAATA
* *
133372 ATTAAT-TTTAATATAAATA
1 ATTAATAATTAATATTAATA
133391 AT
1 AT
133393 CATTATTAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
19 13 0.36
20 2 0.06
21 21 0.58
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (20 bp):
ATTAATAATTAATATTAATA
Found at i:133401 original size:19 final size:20
Alignment explanation
Indices: 133359--133402 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
133349 TTATTAGATA
*
133359 ATTAATATTAATAATTAATT
1 ATTAATATAAATAATTAATT
*
133379 -TTAATATAAATAA-TCATT
1 ATTAATATAAATAATTAATT
133397 ATTAAT
1 ATTAAT
133403 TGATTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (20 bp):
ATTAATATAAATAATTAATT
Found at i:133410 original size:11 final size:12
Alignment explanation
Indices: 133394--133435 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 12
133384 ATAAATAATC
133394 ATTA-TTAATTG
1 ATTATTTAATTG
133405 ATTATTTAATATTG
1 ATTATTT-A-ATTG
133419 ATTATTTAATT-
1 ATTATTTAATTG
133430 ATTATT
1 ATTATT
133436 AAGCTCAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 10 0.36
12 5 0.18
13 2 0.07
14 11 0.39
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (12 bp):
ATTATTTAATTG
Found at i:133414 original size:22 final size:22
Alignment explanation
Indices: 133389--133432 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
133379 TTAATATAAA
*
133389 TAATCATT-ATTAATTGATTATT
1 TAAT-ATTGATTAATTAATTATT
*
133411 TAATATTGATTATTTAATTATT
1 TAATATTGATTAATTAATTATT
133433 ATTAAGCTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (22 bp):
TAATATTGATTAATTAATTATT
Found at i:133415 original size:25 final size:25
Alignment explanation
Indices: 133387--133435 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
133377 TTTTAATATA
133387 AATAATCATTA-TTAATTGATTATTT
1 AATAATCATTATTTAATT-ATTATTT
* *
133412 AATATTGATTATTTAATTATTATT
1 AATAATCATTATTTAATTATTATT
133436 AAGCTCAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (25 bp):
AATAATCATTATTTAATTATTATTT
Found at i:133436 original size:14 final size:14
Alignment explanation
Indices: 133401--133428 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
133391 ATCATTATTA
133401 ATTGATTATTTAAT
1 ATTGATTATTTAAT
133415 ATTGATTATTTAAT
1 ATTGATTATTTAAT
133429 TATTATTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (14 bp):
ATTGATTATTTAAT
Found at i:133742 original size:180 final size:180
Alignment explanation
Indices: 133440--134949 Score: 1188
Period size: 180 Copynumber: 8.4 Consensus size: 180
133430 ATTATTAAGC
* * * * * * *
133440 TCAAATAGTTATAACTATTTGAACAATTTTTTATTTCTAATAGTTATGATCTTTTGTTTTGTCAT
1 TCAAATAGTTATGACTATTAGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCAT
* * * *
133505 AAAAAAATTGTTTCTATTCATACAAGTTTATTCAAAATAAAATAAAACTACTTTATTAATATTTT
66 AAAACAATTGTTTCTATTCATACAAGATTATTCAAAATAAAATAATACTAATTTATTAATATTTT
** * *
133570 GCAAATTAATAGGTAGGAGATTT-AAAAATAAATATGTTTATCGAACAAGT
131 AAAAATTAATA-GCAAGAGATTTAAAAAATAAATATGTTTATCGAACAAGT
* * *
133620 TCAAATAGTTATGTCTATTAGAACAATTAACTATTTCAAATTGTTATGACCTTTTGTTTTGTCAT
1 TCAAATAGTTATGACTATTAGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCAT
* ** *
133685 AAAACAATTGTTTCTATTCATA-TAGAATTATTCAAAATAAAATAATTTTGATTTATTAATATTT
66 AAAACAATTGTTTCTATTCATACAAG-ATTATTCAAAATAAAATAATACTAATTTATTAATATTT
** * * * *
133749 TAAAAATTAAT---AAGAGATTTAAAACCTAAATCTATTTA-CTAAACCAGT
130 TAAAAATTAATAGCAAGAGATTTAAAAAATAAATATGTTTATC-GAACAAGT
* * * * * * * *
133797 TCAAATAGTTATGGCTATTTGAACAATTATCTATCTCAAATCATAATGATC-TTTATTTTGTCGT
1 TCAAATAGTTATGACTATTAGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCAT
* * * * * * *
133861 ACAACAATTGTTTCCT-TTCATACAAGTTTATTCAGATTAATATGATACTAATTTAATAATATTT
66 AAAACAATTGTTT-CTATTCATACAAGATTATTCAAAATAAAATAATACTAATTTATTAATATTT
* * *
133925 CAAAAATTAAT---AAGAGATTTAAAAAATAAATATG-TTAGCCGAACTAGT
130 TAAAAATTAATAGCAAGAGATTTAAAAAATAAATATGTTTA-TCGAACAAGT
* * * * *
133973 TCAAATAGTTAAGACTATCAGAATAATTATCTATTTCAAATCATTCT-ATCCTTTTGTTTTGTCA
1 TCAAATAGTTATGACTATTAGAACAATTATCTATTTCAAATCGTTATGA-CCTTTTGTTTTGTCA
* * *** *
134037 TAAAACAATTATTT-TAGTTCATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAACATT
65 TAAAACAATTGTTTCTA-TTCATACAAGATTATTCAAAATAAAATAATACTAATTTATTAATATT
** * * * * *
134101 CAAAAAATTAA-AGCAAGACATTTAAAAAAATAAATCTATTTATTGAACAATT
129 TTAAAAATTAATAGCAAGAGATTT-AAAAAATAAATATGTTTATCGAACAAGT
* * * * ** * * *
134153 TTAAATAGATATGACTATTA-AACAATTATCTGTTTAAAATTATTTTGACATTTTGTTTTATCAT
1 TCAAATAGTTATGACTATTAGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCAT
* * * * **
134217 AAAACAATTGTTTCAATTAATA-AAAACTTATCTCAAAATAAAATAGTACTGCTTTATTAATATT
66 AAAACAATTGTTTCTATTCATACAAGA-TTAT-TCAAAATAAAATAATACTAATTTATTAATATT
** * * ** * *
134281 CCAAAAATTATTAAGCAAGAGATTTAAAAACTAAAGCTGTTTTTC-AAAACAGT
129 TTAAAAATTAAT-AGCAAGAGATTTAAAAAATAAATATGTTTATCGAACA-AGT
* * * * * *
134334 TCTAATAGTTATGACTATTTGAATAAATAT-TAAGCTT-AAA-CTGTTATGATC-TTTGTTTTGT
1 TCAAATAGTTATGACTATTAGAACAATTATCT-A-TTTCAAATC-GTTATGACCTTTTGTTTTGT
* * * *
134395 CATAAAACAATTGTTT-TTTATCATATAAG-TTGATTC-AGATAAAAATAATACTAATTTAATAA
63 CATAAAACAATTGTTTCTAT-TCATACAAGATT-ATTCAAAAT-AAAATAATACTAATTTATTAA
* * * * *
134457 TATTTTGAAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTT-GCCAATC-AGT
125 TATTTTAAAAATTAAT-AGCAAGAGATTTAAAAAATAAATATGTTTATCGAA-CAAGT
* * * * * **
134513 TCAAATAATTAAGATTATTAGAATAATTATCTATTTCAAATCGTTCTGACCTTTTGTTTAATCAT
1 TCAAATAGTTATGACTATTAGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCAT
* * * *
134578 AAAATAATTGTTTC-AGTTCATACAAGCTTATTCGAAAGAAAATAATACTAATTTATTAACT-TT
66 AAAACAATTGTTTCTA-TTCATACAAGATTATTCAAAATAAAATAATACTAATTTATTAA-TATT
* * * ** * *
134641 TGAAAGATTAATAAGCAAGATATTTGAAAAGCTAAATTTGTTTATTGAACAAGT
129 TTAAAAATTAAT-AGCAAGAGATTT-AAAAAATAAATATGTTTATCGAACAAGT
* * * **
134695 TCAAATAGTTATGACTATTTA-AACAATTATCTATTTAAAATCATTGTGAATTTTTGTTTTGTCA
1 TCAAATAGTTATGACTA-TTAGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCA
* * * * * *
134759 TAAAACAATTGTTT-TAGTTCACAAAAAGTTTATCCAAAATAAAATAATACTACTTTTCTTAATA
65 TAAAACAATTGTTTCTA-TTCA-TACAAGATTATTCAAAATAAAATAATACTA-ATTTATTAATA
* * *
134823 TTTTCAAAAA-T--T---AAGAGATTTAAAAAATAAATAAGTTTA-CTAACTTAGT
127 TTTT-AAAAATTAATAGCAAGAGATTTAAAAAATAAATATGTTTATCGAAC-AAGT
* * * * * ** **
134872 TTAAATAATTATGGCCATTTGAACAATTATCTATTTCAAATCGTTATTTCCTTTCATTTTGTCAT
1 TCAAATAGTTATGACTATTAGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCAT
*
134937 AAAAAAATTGTTT
66 AAAACAATTGTTT
134950 TTCAATATAT
Statistics
Matches: 1054, Mismatches: 223, Indels: 109
0.76 0.16 0.08
Matches are distributed among these distances:
175 5 0.00
176 147 0.14
177 214 0.20
178 12 0.01
179 108 0.10
180 332 0.31
181 89 0.08
182 102 0.10
183 30 0.03
184 11 0.01
185 4 0.00
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (180 bp):
TCAAATAGTTATGACTATTAGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCAT
AAAACAATTGTTTCTATTCATACAAGATTATTCAAAATAAAATAATACTAATTTATTAATATTTT
AAAAATTAATAGCAAGAGATTTAAAAAATAAATATGTTTATCGAACAAGT
Found at i:134442 original size:360 final size:362
Alignment explanation
Indices: 133491--134810 Score: 821
Period size: 361 Copynumber: 3.7 Consensus size: 362
133481 AGTTATGATC
** * * * * ** * * *
133491 TTTTGTTTTGTCATAAAAAAATTGTTTCTATTCATACAAGTTTATTCAAAATAAAATAAAACTAC
1 TTTTGTTTAATCATAAAACAATTGTTTCAATTAATAAAAACTTATTCAAAAGAAAATAATACTAA
* * * * * ** *
133556 TTTATTAATATTTTGC--AAATTAATAGGTAGGAGATTT-AAAAA-TAAATATGTTTA-TCGAAC
66 TTTATT-A-ACTTTCCAAAAATTAATAAGCAAGAGATTTGAAAAACTAAAGCTGTTTATTC-AAA
* * * * * ** *
133616 AAGTTCAAATAGTTATGTCTA-TTAGAACAATTAACTATTTCAAATTGTTATG-ACCTTTTGTTT
128 AAGTTCAAATAGTTATGACTATTTA-AACAAATATCTACTTAAAATCATTATGAATC-TTTGTTT
* * * ** * *
133679 TGTCATAAAACAATTGTTTCTA-TTCATA-TAGAATTATTCAAAATAAAATAATTTTGATTTATT
191 TGTCATAAAACAATTGTTT-TAGTTCATACAAG-CTTATTCAGAATAAAATAATACTAATTTAAT
* ** ** * * *
133742 AATATTTTAAAAATTAATAAG--AG--ATTTAAAACCTAAATCTATTTACTAAACCAGTTCAAAT
254 AACATTCAAAAAATTAATAAGCAAGACATTTAAAAAATAAATCTATTTGC-CAATCAGTTCAAAT
* * * * * * **
133803 AGTTATGGCTATTTGAACAATTATCTATCTCAAATCATAATGATC-
318 AATTAAGACTATTAGAACAATTATCTATTTAAAATCATTCTGA-CA
* * * ** * * ** * ** * *
133848 TTTAT-TTT-GTCGTACAACAATTGTTTCCTTTCATACAAGTTTATTCAGATTAATATGATACTA
1 TTT-TGTTTAATCATAAAACAATTGTTTCAATTAATAAAAACTTATTCAAAAGAAAATAATACTA
* * * ** ** *
133911 ATTTAATAA-TATTTCAAAAATTAAT----AAGAGATTT-AAAAAATAAATATG-TTAGCCGAAC
65 ATTTATTAACT-TTCCAAAAATTAATAAGCAAGAGATTTGAAAAACTAAAGCTGTTTATTC-AAA
* * * * * * * *
133969 TAGTTCAAATAGTTAAGACTA-TCAGAATAATTATCTATTTCAAATCATTCT--ATCCTTTTGTT
128 AAGTTCAAATAGTTATGACTATTTA-AACAAATATCTACTTAAAATCATTATGAAT-C-TTTGTT
* ** *
134031 TTGTCATAAAACAATTATTTTAGTTCATACAAGCTTATTTGGAATAAAATAATACTAATTTATTA
190 TTGTCATAAAACAATTGTTTTAGTTCATACAAGCTTATTCAGAATAAAATAATACTAATTTAATA
*** * *
134096 ACATTCAAAAAATT-A-AAGCAAGACATTTAAAAAAATAAATCTATTTATTGAA-CAATTTTAAA
255 ACATTCAAAAAATTAATAAGCAAGACATTT-AAAAAATAAATCTATTT-GCCAATC-AGTTCAAA
* * * *
134158 TAGA-TATGACTATTA-AACAATTATCTGTTTAAAATTATTTTGACA
317 TA-ATTAAGACTATTAGAACAATTATCTATTTAAAATCATTCTGACA
* * * *
134203 TTTTGTTTTATCATAAAACAATTGTTTCAATTAATAAAAACTTATCTCAAAATAAAATAGTACTG
1 TTTTGTTTAATCATAAAACAATTGTTTCAATTAATAAAAACTTAT-TCAAAAGAAAATAATACTA
* *
134268 CTTTATTAA-TATTCCAAAAATTATTAAGCAAGAGATTT-AAAAACTAAAGCTGTTT-TTCAAAA
65 ATTTATTAACT-TTCCAAAAATTAATAAGCAAGAGATTTGAAAAACTAAAGCTGTTTATTCAAAA
* * * * *
134330 CAGTTCTAATAGTTATGACTATTTGAATAAATAT-TAAGCTTAAACT-GTTATG-ATCTTTGTTT
129 -AGTTCAAATAGTTATGACTATTTAAACAAATATCT-A-CTTAAAATCATTATGAATCTTTGTTT
* *
134392 TGTCATAAAACAATTGTTTT-TTATCATATAAG-TTGATTCAG-ATAAAAATAATACTAATTTAA
191 TGTCATAAAACAATTGTTTTAGT-TCATACAAGCTT-ATTCAGAAT-AAAATAATACTAATTTAA
* *** * * * *
134454 TAATATTTTGAAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTGCCAATCAGTTCAAAT
253 TAACATTCAAAAAATTAATAAGCAAGACATTTAAAAAATAAATCTATTTGCCAATCAGTTCAAAT
* * * * *
134519 AATTAAGATTATTAGAATAATTATCTATTTCAAATCGTTCTGACC
318 AATTAAGACTATTAGAACAATTATCTATTTAAAATCATTCTGACA
* * * * * *
134564 TTTTGTTTAATCATAAAATAATTGTTTCAGTTCATACAAGCTTATTCGAAAGAAAATAATACTAA
1 TTTTGTTTAATCATAAAACAATTGTTTCAATTAATAAAAACTTATTCAAAAGAAAATAATACTAA
** * * * ** * *
134629 TTTATTAACTTTTGAAAGATTAATAAGCAAGATATTTGAAAAGCTAAATTTGTTTATTGAACAAG
66 TTTATTAACTTTCCAAAAATTAATAAGCAAGAGATTTGAAAAACTAAAGCTGTTTATTCAAAAAG
* * * *
134694 TTCAAATAGTTATGACTATTTAAACAATTATCTATTTAAAATCATTGTGAATTTTTGTTTTGTCA
131 TTCAAATAGTTATGACTATTTAAACAAATATCTACTTAAAATCATTATGAATCTTTGTTTTGTCA
* * * * *
134759 TAAAACAATTGTTTTAGTTCACAAAAAGTTTATCCAAAATAAAATAATACTA
196 TAAAACAATTGTTTTAGTTCA-TACAAGCTTATTCAGAATAAAATAATACTA
134811 CTTTTCTTAA
Statistics
Matches: 762, Mismatches: 152, Indels: 92
0.76 0.15 0.09
Matches are distributed among these distances:
351 3 0.00
352 20 0.03
353 127 0.17
354 8 0.01
355 34 0.04
356 119 0.16
357 40 0.05
358 1 0.00
359 6 0.01
360 140 0.18
361 180 0.24
362 59 0.08
363 21 0.03
364 4 0.01
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (362 bp):
TTTTGTTTAATCATAAAACAATTGTTTCAATTAATAAAAACTTATTCAAAAGAAAATAATACTAA
TTTATTAACTTTCCAAAAATTAATAAGCAAGAGATTTGAAAAACTAAAGCTGTTTATTCAAAAAG
TTCAAATAGTTATGACTATTTAAACAAATATCTACTTAAAATCATTATGAATCTTTGTTTTGTCA
TAAAACAATTGTTTTAGTTCATACAAGCTTATTCAGAATAAAATAATACTAATTTAATAACATTC
AAAAAATTAATAAGCAAGACATTTAAAAAATAAATCTATTTGCCAATCAGTTCAAATAATTAAGA
CTATTAGAACAATTATCTATTTAAAATCATTCTGACA
Found at i:135193 original size:24 final size:22
Alignment explanation
Indices: 135161--135206 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
135151 CCAAATTGTT
135161 ATAATA-TTTTGTTTTGTCATAAA
1 ATAATATTTTTG-TTTGT-ATAAA
135184 ATAATTATTTTTGTTTGTATAAA
1 ATAA-TATTTTTGTTTGTATAAA
135207 TTTATTCGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 9 0.43
24 7 0.33
25 5 0.24
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.54
Consensus pattern (22 bp):
ATAATATTTTTGTTTGTATAAA
Found at i:136168 original size:11 final size:11
Alignment explanation
Indices: 136152--136191 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
136142 TAGCTCTTAC
136152 TAATAAACATA
1 TAATAAACATA
**
136163 TAATAATTATA
1 TAATAAACATA
136174 CTAATAAACATA
1 -TAATAAACATA
136186 TAATAA
1 TAATAA
136192 TTAGATTAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (11 bp):
TAATAAACATA
Found at i:136177 original size:23 final size:23
Alignment explanation
Indices: 136149--136194 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
136139 TTTTAGCTCT
136149 TACTAATAAACATATAATAATTA
1 TACTAATAAACATATAATAATTA
136172 TACTAATAAACATATAATAATTA
1 TACTAATAAACATATAATAATTA
136195 GATTAACTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.35
Consensus pattern (23 bp):
TACTAATAAACATATAATAATTA
Found at i:136760 original size:179 final size:182
Alignment explanation
Indices: 136432--136969 Score: 518
Period size: 179 Copynumber: 3.0 Consensus size: 182
136422 ACTAATATAG
* * ** * *
136432 ATTTATTTTTTAAAT-TTTTACTTATTAATCCTT-AGAATATTAGTAAATTTATATTATTTT-AT
1 ATTTATTTTTTAAATCTCTTACTCATTAATTATTGA-AATATTAATAAATTAATATTATTTTAAT
* * * * ** * * * **
136494 TTGAAATAAGCTTGTATGAACGTAAACAATTATTTTATGACAAAAT-AAAAGGTCTTAATGATTT
65 CT-AAATAAGCCTATATAAACAAAAACAATTGTTTTATGACAAAATAAAAAGATCATAAAAATTT
*
136558 GAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAA
129 GAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTATTCGGTAAACAA
* * * * *
136612 ATTTATTTTTTAAATCTCTTACTCATTAATTTTTTG-AATATTGATAAGTTAGTATTGTTTT-AT
1 ATTTATTTTTTAAATCTCTTACTCATTAA-TTATTGAAATATTAATAAATTAATATTATTTTAAT
* *** * ** *
136675 TTCAAATAAGCCTATATAAATTGATACAATT-TTTTATGATGAAA-CAAAAGATCA-AAAAATTT
65 CT-AAATAAGCCTATATAAACAAAAACAATTGTTTTATGACAAAATAAAAAGATCATAAAAATTT
* * * * * * * *
136737 GAAATAGATAATTATTTAAATAGTTATTACTATTTGAATTTATTTGATAAACAT
129 GAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTATTCGGTAAACAA
* *
136791 ATTTATTTTTTAAATCTTTTACTTATTAATTATTGAAATATTAATAAATTAATATTATTTTAATC
1 ATTTATTTTTTAAATCTCTTACTCATTAATTATTGAAATATTAATAAATTAATATTATTTTAATC
* * * * * * **
136856 TGAATAAGCTTTTATGAACAAAAATAATTGTTTTATGACAAAATAAAAAGGTCATAATGATTTGA
66 TAAATAAGCCTATATAAACAAAAACAATTGTTTTATGACAAAATAAAAAGATCATAAAAATTTGA
* *
136921 AATAAATAATTGTTCAAATAGTCATAACTATTTAAACTTATTCGGTAAA
131 AATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTATTCGGTAAA
136970 TAGATTTGAA
Statistics
Matches: 284, Mismatches: 65, Indels: 16
0.78 0.18 0.04
Matches are distributed among these distances:
178 5 0.02
179 118 0.42
180 47 0.17
181 63 0.22
182 51 0.18
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.43
Consensus pattern (182 bp):
ATTTATTTTTTAAATCTCTTACTCATTAATTATTGAAATATTAATAAATTAATATTATTTTAATC
TAAATAAGCCTATATAAACAAAAACAATTGTTTTATGACAAAATAAAAAGATCATAAAAATTTGA
AATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTATTCGGTAAACAA
Found at i:137079 original size:120 final size:121
Alignment explanation
Indices: 136858--137096 Score: 322
Period size: 120 Copynumber: 2.0 Consensus size: 121
136848 TTTTAATCTG
**
136858 AATAAGCTTTTATGAACAAAAATAATTGTTTTATGACAAAATAAAAAGGTCATAATGATTTGAAA
1 AATAAGCTTTTATGAACAAAAATAATTGTTTTATGACAAAATAAAAAGGTCATAACAATTTGAAA
** *
136923 TAAATAATTGTTCAAATAGTCATAACTATTTAAACTTATTCGGTAAATAGATTTGA
66 TAAATAATTGTTCAAATAACCATAACTATTTAAACTTATTCAGTAAATAGATTTGA
* * * *
136979 AATAAG-TTTGTATGAATAGAAAA-AATTGTTTTATGACAAAA-CATAAGGTCATAGCAATTTGA
1 AATAAGCTTT-TATGAACA-AAAATAATTGTTTTATGACAAAATAAAAAGGTCATAACAATTTGA
* * * *
137041 AATAGATAATTGTTCAAATAACCATAACTGTTTGAACTTGTTCAGTAAATAGATTT
64 AATAAATAATTGTTCAAATAACCATAACTATTTAAACTTATTCAGTAAATAGATTT
137097 ATTTTTTAAA
Statistics
Matches: 103, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
120 68 0.66
121 31 0.30
122 4 0.04
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (121 bp):
AATAAGCTTTTATGAACAAAAATAATTGTTTTATGACAAAATAAAAAGGTCATAACAATTTGAAA
TAAATAATTGTTCAAATAACCATAACTATTTAAACTTATTCAGTAAATAGATTTGA
Found at i:137971 original size:19 final size:19
Alignment explanation
Indices: 137949--138030 Score: 55
Period size: 19 Copynumber: 4.3 Consensus size: 19
137939 TCTAATTAAA
137949 TTATTAAATTATTAATAAT
1 TTATTAAATTATTAATAAT
* *
137968 TTATTCAAAATATTAATTAT
1 TTATT-AAATTATTAATAAT
*
137988 TAGATT-AATTA-TAA-AAT
1 T-TATTAAATTATTAATAAT
*
138005 TAATTATTAATTATATAAT-AT
1 TTATTA--AATTAT-TAATAAT
138026 TTATT
1 TTATT
138031 TATTTTAATA
Statistics
Matches: 48, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
16 3 0.06
17 3 0.06
18 3 0.06
19 14 0.29
20 13 0.27
21 12 0.25
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (19 bp):
TTATTAAATTATTAATAAT
Found at i:137996 original size:12 final size:11
Alignment explanation
Indices: 137979--138017 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
137969 TATTCAAAAT
137979 ATTAATTATTA
1 ATTAATTATTA
*
137990 GATTAATTATAAA
1 -ATTAATTAT-TA
138003 ATTAATTATTA
1 ATTAATTATTA
138014 ATTA
1 ATTA
138018 TATAATATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 5 0.21
12 18 0.75
13 1 0.04
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (11 bp):
ATTAATTATTA
Found at i:138961 original size:13 final size:13
Alignment explanation
Indices: 138943--139053 Score: 51
Period size: 13 Copynumber: 9.1 Consensus size: 13
138933 ATAACTATCC
*
138943 TAATATATAATGA
1 TAATATATAATAA
*
138956 TAATATATATTAA
1 TAATATATAATAA
*
138969 TAATAT-TAGTAA
1 TAATATATAATAA
*
138981 T--TATA-AATAT
1 TAATATATAATAA
* *
138991 TATTTTAATTAATAA
1 TAATAT-A-TAATAA
*
139006 TAATATATATTAA
1 TAATATATAATAA
*
139019 TTA-AT-TAA-AA
1 TAATATATAATAA
*
139029 -AATTTATAATAA
1 TAATATATAATAA
*
139041 T-ATAAATAATAA
1 TAATATATAATAA
139053 T
1 T
139054 TAATTAAATA
Statistics
Matches: 72, Mismatches: 16, Indels: 21
0.66 0.15 0.19
Matches are distributed among these distances:
9 1 0.01
10 10 0.14
11 5 0.07
12 22 0.31
13 25 0.35
14 1 0.01
15 8 0.11
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (13 bp):
TAATATATAATAA
Found at i:139001 original size:25 final size:24
Alignment explanation
Indices: 138950--139026 Score: 73
Period size: 25 Copynumber: 3.1 Consensus size: 24
138940 TCCTAATATA
* * *
138950 TAATGATAATATATATTAATAATAT
1 TAATAATAATAAATATTAATTA-AT
* * *
138975 TAGTAATTATAAATATTATTTTAAT
1 TAATAATAATAAATATTA-ATTAAT
*
139000 TAATAATAATATATATTAATTAAT
1 TAATAATAATAAATATTAATTAAT
139024 TAA
1 TAA
139027 AAAATTTATA
Statistics
Matches: 41, Mismatches: 10, Indels: 3
0.76 0.19 0.06
Matches are distributed among these distances:
24 8 0.20
25 31 0.76
26 2 0.05
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.47
Consensus pattern (24 bp):
TAATAATAATAAATATTAATTAAT
Found at i:139043 original size:32 final size:33
Alignment explanation
Indices: 138997--139061 Score: 96
Period size: 34 Copynumber: 2.0 Consensus size: 33
138987 ATATTATTTT
*
138997 AATTAATAATAATAT-ATATTAATTAATTAAAA
1 AATTAATAATAATATAATAATAATTAATTAAAA
*
139029 AATTTATAATAATATAAATAATAATTAATTAAA
1 AATTAATAATAATAT-AATAATAATTAATTAAA
139062 TACAAATATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 14 0.48
34 15 0.52
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (33 bp):
AATTAATAATAATATAATAATAATTAATTAAAA
Found at i:139323 original size:17 final size:17
Alignment explanation
Indices: 139292--139326 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
139282 AATAATATAC
*
139292 TATAATATTATAATAAT
1 TATAATATTAGAATAAT
*
139309 TATAATATTCGAATAAT
1 TATAATATTAGAATAAT
139326 T
1 T
139327 TTTTAACTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (17 bp):
TATAATATTAGAATAAT
Found at i:141133 original size:182 final size:179
Alignment explanation
Indices: 140133--141348 Score: 908
Period size: 179 Copynumber: 6.8 Consensus size: 179
140123 ATTGTTTCTA
** * * * *
140133 TTCATACAAAATTATTCAAAATAAAATAATACTATTTTATTACTATTTTGAAAACTAATAA--G-
1 TTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTATGAAAATTAATAAGTGA
* *
140195 AGATTTAAAAC-TAAATCTCTTTATCGAA-CTAGTTCAAATAGTTATGACTATTTGAACAATTAT
66 AGATTTAAAACATAAATCTGTTTACCGAATC-AGTTCAAATAGTTATGACTATTTGAACAATTAT
* * ** * * * * *
140258 CTATCTCCAATTGTTATGATTTTTGTTTTGTCCTAAAACATTTAATTTTTG
130 CTATTTCAAATCATTATGACTTTTGTTTTGTCATAAAACAATT-ATTTATC
* * * * * * * *
140309 TTCA-ACAAGCTTATTTAGAGTAAAATATTGCTAAATTAATAATATTCT-AAACATTAATAAGT-
1 TTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTATGAAA-ATTAATAAGTG
* * * * * * *
140371 AAGGATTTAAAAAATAAATGTGTTTGCTGAATCAATTCAAATAGTTAAGACTATTAGAACAATTA
65 AA-GATTTAAAACATAAATCTGTTTACCGAATCAGTTCAAATAGTTATGACTATTTGAACAATTA
* * * * *
140436 TCTATTTCAAATCATTTTGACCTTTTGTTTAGTCATAAAATAATTACTTCA-A
129 TCTATTTCAAATCATTATGA-CTTTTGTTTTGTCATAAAACAATTA-TTTATC
* * * * * **
140488 TTCATACATGCTTATTCGAAATAGAATAATACTAATTTATTAACATTCA--AAAATTTAT-TCTG
1 TTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATT-ATGAAAATTAATAAGTG
* * * * *
140550 TAAGAAATTAAGAA-A-AAATCTATTTATCGGGAA--AGTTCAAATATTTTTGACTATTTGAACA
65 -AAG-ATTTAA-AACATAAATCTGTTTA-C-CGAATCAGTTCAAATAGTTATGACTATTTGAACA
* * * * * * *
140611 GTTATCTATTTAAAATCATTATGACCTTATATTTTATCATAAAACAATTGTTTCA-G
125 ATTATCTATTTCAAATCATTATGA-CTTTTGTTTTGTCATAAAACAATTATTT-ATC
* * * * * * * *
140667 TTCATAAAAGGTTA-TCTGAAATAAAATAATATTACTTTATTAATATTATAAAAATTGATAAGTT
1 TTCATACAAGCTTATTC-AAAATAAAATAATACTAATTTATTAATATTATGAAAATTAATAAGTG
* * * * *
140731 AGAGATTTAAAACATAAATCAGTTTATCGAATCAGTTCAAATAATTATG-GTCATTTAAACAATT
65 A-AGATTTAAAACATAAATCTGTTTACCGAATCAGTTCAAATAGTTATGACT-ATTTGAACAATT
* * *
140795 ATCTATTTCAAATCATTATGAACGTTTG--TTGTCATAAAACAATTGTTTTTC
128 ATCTATTTCAAATCATTATG-ACTTTTGTTTTGTCATAAAACAATTATTTATC
* * * * *
140846 ATCTTACATGCCTATTCAGAATAAAATAATACTAATTTATTAATATT-TGAAAAATTAATAAGTA
1 TTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTATG-AAAATTAATAAGT-
* * * *
140910 GAAGATTTAAAAAATAAATATGTTTATCAAATCAGTTCAAATAGTTATGACTATTTGAACAATTA
64 GAAGATTTAAAACATAAATCTGTTTACCGAATCAGTTCAAATAGTTATGACTATTTGAACAATTA
* * *
140975 TATATTTCCAATCATTATAACCTTTTTGTTTTGTCATAAAACAATTATTTATC
129 TCTATTTCAAATCATTATGA-C-TTTTGTTTTGTCATAAAACAATTATTTATC
* * * * *
141028 TTCATTCAAGCTTATTCAAAATAAAATAATACTAATCTAGTAATATTATGAAATTTAATAACTGA
1 TTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTATGAAAATTAATAAGTGA
* * * * * * * *
141093 TAGATCTAAAACATAAATTTGTTTACCGAACCAATTCAAATAGTTAAGGCTATATGAATAATTAT
66 -AGATTTAAAACATAAATCTGTTTACCGAATCAGTTCAAATAGTTATGACTATTTGAACAATTAT
* * * * * * *
141158 CTATTTCAAATCGTTATGACTTTTTGTTTTGTCGTAAAAAAAATGTTTTTG
130 CTATTTCAAATCATTATGAC-TTTTGTTTTGTCATAAAACAATTATTTATC
* * * ** * *
141209 TTCATATAAGTTTGTTTGAAATAAAATAATATTAATTTATTAATATT-TCAAAAATTAATAA--G
1 TTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTAT-GAAAATTAATAAGTG
* * * * *
141271 -AGATTTAATAA-ATAAATCTATTTACC--ATACTAGTTC-AATAAGTTATAACAATTTAAACAT
65 AAGATTTAA-AACATAAATCTGTTTACCGAAT-C-AGTTCAAAT-AGTTATGACTATTTGAACAA
*
141331 TTATTTATTTCAAATCAT
126 TTATCTATTTCAAATCAT
141349 GCTAAATTAA
Statistics
Matches: 813, Mismatches: 182, Indels: 89
0.75 0.17 0.08
Matches are distributed among these distances:
174 3 0.00
175 40 0.05
176 8 0.01
177 53 0.07
178 19 0.02
179 319 0.39
180 90 0.11
181 139 0.17
182 140 0.17
183 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.40
Consensus pattern (179 bp):
TTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTATGAAAATTAATAAGTGA
AGATTTAAAACATAAATCTGTTTACCGAATCAGTTCAAATAGTTATGACTATTTGAACAATTATC
TATTTCAAATCATTATGACTTTTGTTTTGTCATAAAACAATTATTTATC
Found at i:141608 original size:22 final size:22
Alignment explanation
Indices: 141582--141629 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
141572 TACCTAATGA
* *
141582 TAATATTAATATTATTTATTAT
1 TAATATCAATATTAATTATTAT
141604 TAATATCAATATTAATTATTAT
1 TAATATCAATATTAATTATTAT
141626 TAAT
1 TAAT
141630 TAATTCTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (22 bp):
TAATATCAATATTAATTATTAT
Found at i:141628 original size:10 final size:10
Alignment explanation
Indices: 141586--141669 Score: 55
Period size: 10 Copynumber: 7.9 Consensus size: 10
141576 TAATGATAAT
141586 ATTAATATTA
1 ATTAATATTA
* *
141596 TTTATTATTA
1 ATTAATATTA
141606 ATATCAATATTA
1 AT-T-AATATTA
*
141618 ATTATTATTA
1 ATTAATATTA
141628 ATTAAT-TCTA
1 ATTAATAT-TA
141638 TATTAATAATTTA
1 -ATTAAT-A-TTA
*
141651 ATTAAAATT-
1 ATTAATATTA
141660 ATTAACTATT
1 ATTAA-TATT
141670 TAGTTGTCTA
Statistics
Matches: 58, Mismatches: 8, Indels: 16
0.71 0.10 0.20
Matches are distributed among these distances:
9 6 0.10
10 27 0.47
11 9 0.16
12 13 0.22
13 2 0.03
14 1 0.02
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (10 bp):
ATTAATATTA
Found at i:141640 original size:25 final size:26
Alignment explanation
Indices: 141583--141650 Score: 77
Period size: 25 Copynumber: 2.6 Consensus size: 26
141573 ACCTAATGAT
141583 AATATTAATATTATTTATTATTAATATC
1 AATATT-A-ATTATTTATTATTAATATC
141611 AATATTAATTA-TTATTAATTAAT-TC
1 AATATTAATTATTTATT-ATTAATATC
* *
141636 TATATTAATAATTTA
1 AATATTAATTATTTA
141651 ATTAAAATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
25 16 0.44
26 13 0.36
27 1 0.03
28 6 0.17
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (26 bp):
AATATTAATTATTTATTATTAATATC
Found at i:142108 original size:182 final size:181
Alignment explanation
Indices: 141920--142321 Score: 467
Period size: 182 Copynumber: 2.2 Consensus size: 181
141910 TTTTAAATCT
* *
141920 CTTATTAAATTTTGAAATATTATTAAATTAATATTATTTTTA-ACTGAATAAGCTTCTATGA-TA
1 CTTATTAAATTTTGAAATATTAATAAATTAGTATTATTTTTATACTGAATAAGCTTCTATGATTA
* * * * * * * **
141983 AGGAATAATTGTTTTATGACAAAAC-AAAGATC-TAAATTATTTGAGACTGATAATTGTTCAAAT
66 A-AAACAAATATTTTATGACAAAACAAAAGATCAT-AATGATTTGAAACAGATAATCATTCAAAT
* * *
142046 AGTCATAATTATTTGAATTGATTCGATAAACATATTTATTTTTTTAAATTTTCTTA
129 AGCCATAATTATTTGAATTAATTCGATAAACAAATTTA--TTTTTAAA-TTTCTTA
* * * ** *
142102 CTTATTAATTTTTGAAATATTAAAAAATTAGTAATA-TTTTATTTTGAATAAGCTTGTATGATTA
1 CTTATTAAATTTTGAAATATTAATAAATTAGTATTATTTTTATACTGAATAAGCTTCTATGATTA
*
142166 AAAACAAATATTTTATGACAAAACAAAAGATCATAATGATTTGAAACAGATAATCATTCAAATGG
66 AAAACAAATATTTTATGACAAAACAAAAGATCATAATGATTTGAAACAGATAATCATTCAAATAG
* * * *
142231 CCATATTTATTTTAATTAATTCGGTAAATAAATTTATTTTTAAATTTCTTA
131 CCATAATTATTTGAATTAATTCGATAAACAAATTTATTTTTAAATTTCTTA
142282 CTTATT--ATTTTAGGAAATATTAATAAATTAGTATTATTTT
1 CTTATTAAATTTT--GAAATATTAATAAATTAGTATTATTTT
142322 ATTCCCTCTA
Statistics
Matches: 185, Mismatches: 28, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
178 4 0.02
180 34 0.18
181 16 0.09
182 66 0.36
183 64 0.35
184 1 0.01
ACGTcount: A:0.41, C:0.07, G:0.09, T:0.44
Consensus pattern (181 bp):
CTTATTAAATTTTGAAATATTAATAAATTAGTATTATTTTTATACTGAATAAGCTTCTATGATTA
AAAACAAATATTTTATGACAAAACAAAAGATCATAATGATTTGAAACAGATAATCATTCAAATAG
CCATAATTATTTGAATTAATTCGATAAACAAATTTATTTTTAAATTTCTTA
Found at i:142312 original size:180 final size:178
Alignment explanation
Indices: 141902--142325 Score: 473
Period size: 183 Copynumber: 2.4 Consensus size: 178
141892 TGGCAAAAAG
* * * * * *
141902 AATTTCTTTTTTAAATCTCTTA-TTA-AATTTTGAAATATTATTAAATTAATATTATTTT-TAAC
1 AATTTATTTTTTAAATTTCTTACTTATTATTTTGAAATATTAATAAATTAGTATTATTTTAT-TC
* * * * * *
141964 TGAATAAGCTTCTATGATAAGGAATAATTGTTTTATGACAAAACAAAGATCTAAATTATTTGAGA
65 TGAATAAGCTTCTATGATAAGAAACAAATATTTTATGACAAAACAAAGATCTAAATGATTTGAAA
* ** * *
142029 CTGATAATTGTTCAAATAGTCATAATTATTTGAATTGATTCGATAAACA
130 CAGATAATCATTCAAATAGCCATAATTATTTGAATTAATTCGATAAACA
* * *
142078 TATTTATTTTTTTAAATTTTCTTACTTATTAATTTTTGAAATATTAAAAAATTAGTAATATTTTA
1 AATTTA-TTTTTTAAA-TTTCTTACTTATT-A-TTTTGAAATATTAATAAATTAGTATTATTTTA
* *
142143 TTTTGAATAAGCTTGTATGATTAA-AAACAAATATTTTATGACAAAACAAAAGATC-ATAATGAT
62 TTCTGAATAAGCTTCTATGA-TAAGAAACAAATATTTTATGACAAAAC-AAAGATCTA-AATGAT
* * * * *
142206 TTGAAACAGATAATCATTCAAATGGCCATATTTATTTTAATTAATTCGGTAAATA
124 TTGAAACAGATAATCATTCAAATAGCCATAATTATTTGAATTAATTCGATAAACA
142261 AATTTA-TTTTTAAATTTCTTACTTATTATTTTAGGAAATATTAATAAATTAGTATTATTTTATT
1 AATTTATTTTTTAAATTTCTTACTTATTATTTT--GAAATATTAATAAATTAGTATTATTTTATT
142325 C
64 C
142326 CCTCTAAGCT
Statistics
Matches: 205, Mismatches: 31, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
176 4 0.02
177 9 0.04
178 10 0.05
179 4 0.02
180 41 0.20
181 9 0.04
182 63 0.31
183 65 0.32
ACGTcount: A:0.40, C:0.07, G:0.08, T:0.45
Consensus pattern (178 bp):
AATTTATTTTTTAAATTTCTTACTTATTATTTTGAAATATTAATAAATTAGTATTATTTTATTCT
GAATAAGCTTCTATGATAAGAAACAAATATTTTATGACAAAACAAAGATCTAAATGATTTGAAAC
AGATAATCATTCAAATAGCCATAATTATTTGAATTAATTCGATAAACA
Done.