Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168078.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_326, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 34521
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Found at i:1422 original size:26 final size:26
Alignment explanation
Indices: 1385--1437 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1375 GTTGACTTAG
1385 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1411 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1437 G
1 G
1438 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1776 original size:899 final size:893
Alignment explanation
Indices: 1--2034 Score: 2911
Period size: 899 Copynumber: 2.3 Consensus size: 893
* * *
1 ATTTTTTTGTGCATGCC-A-AAAAATACAAGGATCACGTCTAACCAAGTTTGGGGCCAAAACTCC
1 ATTTTTTT-TGCATGCCAACAAAAATATAAGGATCATGTCTAA-CAAGTTTGGGGCCAAAAATCC
* * * * *
64 TTCCGAAAAAATTTTAAAAAAACCCGAA-TGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAT
64 TTTCGAAAAAAATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * *
128 GGGTCGTCTTGCCATGAAACTTCTCATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
129 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* *
193 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGACTAAACCCACCTACCATGATCCACGGCT
194 AAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATGATCCACCGCT
* * * *
258 TGCACGTCCCGTCTCTCTGGCCAGCGTAGTGCCCATCCGTCCATCCGCTCGTTTCGTCGGTTGGC
259 TGCACATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCGCCCATCCGCTCGTTTCATCGGTTGGC
* * *
323 TTAGGAATACGGAGTTCATTATCAATCTAAGATTGGACCAGACCGAGGGTTACGGTAGTAGAATC
324 TTAGGAATACGGAGTTCATTACCAATCTAAGATTGGACCAGACCGAGGGTTACAGTAGAAGAATC
* * * * * *
388 AGCAGCACATAGAGGCTGACCCGACGGATCCCTAGCTTGCGCATCCCGCCCCTCTGGCCAGTTGA
389 AGCAGCACACAGAGGCGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTAGCCAGCTGA
** * * * *
453 GCACCCGTACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
454 GCACCCACACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATAC
* *
518 GGAGTTCATTCCAAGTTGAAGATCGGACCAGACCGAGGGTTGCAACAGCATATGCTGGGCCCGAG
519 GGAGTTCATTCCAAGTTGAAGATCAGACCAGACCGAGGGTTGCAACAGCACATGCTGGGCCCGAG
* * *
583 CATGTGTTGGTGCCGCATTTTTCTTTGCCAGGGCACTATCGTCGGAGCATCGTCGGAGAACCTGA
584 CATGTGTTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGA
* * * * **
648 TCGACGGCATTGGGGTTCCGGCGATCGGGCGGGCTGGGGGGGTGTGCGCACATGATGTGTGATGG
649 CCGACGGCATTGGGGTTCCGACGATCGGGCGGGCCGAGGGGGTGTGCGCACATGATGTGCAATGG
* *
713 GTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACGTCAAGAACTCACACCCCC
714 GTGCTGGTACTTGGCACTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACCCCC
* * **
778 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGTT
779 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGAC
*
843 ACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
844 ACTTTTTTCAAATGATCACAAAATCTTATACACTTCGAGTTTTTAGCTGA
*
893 ATTTTTTTCTGCGTGCCAACAAAAATATAAGGATCATGTCTAACAAGTTT-GGGCCAAAAATCCT
1 ATTTTTTT-TGCATGCCAACAAAAATATAAGGATCATGTCTAACAAGTTTGGGGCCAAAAATCCT
*
957 TTCGAAAAAAATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
65 TTCGAAAAAAATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
1022 AGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
130 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
1087 AAAATGGCATTGGCAT-CTAGAAATATGAAGATGTGCCTTAACCCACCTACCACCCTATCGATTC
195 AAAATGGCATTGGCATGC-AGAAATATGAAGATGTGCCTAAACCCACCT---A-CC-AT-GATCC
** * * * *
1151 ACCGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC-GCTCGCTCGTTTCATT
253 ACCGCTTGCACATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCGCCCATC-CGCTCGTTTCATC
** * * ** * *
1215 GGTTGGCTTAGTCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCAGTAG
317 GGTTGGCTTAGGAATACGGAGTTCATTACCAATCTAAGATTGGACCAGACCGAGGGTTACAGTAG
* * * * * * *
1280 CAAG-ATCGGCAGCACACAGAGGGGGACCTGGCCGATCCCCATCTTGTGCATCCCGCCTCTCTAG
382 -AAGAATCAGCAGCACACAGAGGCGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTAG
* *
1344 CCGGCTGAGCGCCCACACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCT
446 CCAGCTGAGCACCCACACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCT
* * *
1409 AAGCATACGGAGTTCATTCCCAGTCT-AAGATCAGACCAGACTGAGGGTTGCGACAGCACATGCT
511 AAGCATACGGAGTTCATTCCAAGT-TGAAGATCAGACCAGACCGAGGGTTGCAACAGCACATGCT
* * * * *
1473 GGGCTCGGGCATGTGTTGGTGCCGTATTTTTCTTCGTC-GGAGCACCATCGTCGGAGCATCGCCT
575 GGGCCCGAGCATGTGTTGGTGCCGCATTTTTCTTCGCCAGG-GCACCATCGTCGGAGCATCGCCG
* *
1537 GAGAACCTTACCGACGGCATTGGGGTTCCGACGATCCGGG-GGGCCGAGGGGGTGTGTGCACATG
639 GAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-CGGGCGGGCCGAGGGGGTGTGCGCACATG
* *
1601 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAA
703 ATGTGCAATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAA
*
1666 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCT
768 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCT
* *
1731 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTGAGTTTTTAGCTGA
833 AAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTATACACTTCGAGTTTTTAGCTGA
* * *
1792 ATTCTTTTTTACATGCCAACAAAAATATAAAGATCATGTCTATCAAGTTTGGGGCCAAAAATCC-
1 ATT-TTTTTTGCATGCCAACAAAAATATAAGGATCATGTCTAACAAGTTTGGGGCCAAAAATCCT
* **
1856 TTCTAAAAAAATTTTAAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAA
65 TTCGAAAAAAA-TTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
* *
1921 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTAACAAGCCA
128 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
*
1986 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACC
193 TAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
2035 CGTCCACCCG
Statistics
Matches: 1015, Mismatches: 107, Indels: 31
0.88 0.09 0.03
Matches are distributed among these distances:
892 53 0.05
893 147 0.14
894 21 0.02
896 1 0.00
897 2 0.00
898 5 0.00
899 604 0.60
900 28 0.03
901 153 0.15
902 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (893 bp):
ATTTTTTTTGCATGCCAACAAAAATATAAGGATCATGTCTAACAAGTTTGGGGCCAAAAATCCTT
TCGAAAAAAATTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATGATCCACCGCTTG
CACATCCCGTCTCTCTGGCCAGCGTAGTGCCCACCCGCCCATCCGCTCGTTTCATCGGTTGGCTT
AGGAATACGGAGTTCATTACCAATCTAAGATTGGACCAGACCGAGGGTTACAGTAGAAGAATCAG
CAGCACACAGAGGCGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTAGCCAGCTGAGC
ACCCACACACTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGG
AGTTCATTCCAAGTTGAAGATCAGACCAGACCGAGGGTTGCAACAGCACATGCTGGGCCCGAGCA
TGTGTTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
GACGGCATTGGGGTTCCGACGATCGGGCGGGCCGAGGGGGTGTGCGCACATGATGTGCAATGGGT
GCTGGTACTTGGCACTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACAC
TTTTTTCAAATGATCACAAAATCTTATACACTTCGAGTTTTTAGCTGA
Found at i:2226 original size:26 final size:26
Alignment explanation
Indices: 2190--2242 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2180 GTTGACTTAG
*
2190 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2216 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
2242 G
1 G
2243 ATCGAACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:3100 original size:25 final size:26
Alignment explanation
Indices: 3071--3122 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
3061 GTTGACTTAG
*
3071 GCATACGGAGTTCATT-CTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
3096 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
3122 G
1 G
3123 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:3519 original size:888 final size:892
Alignment explanation
Indices: 2088--5951 Score: 4768
Period size: 899 Copynumber: 4.3 Consensus size: 892
2078 ACAGCAACAG
* * * ** * * ** ** *
2088 GATCGACAGCACACAAAGGGGAACCCGACCGATCCCTGGCTTGTGCATCCCACCCCTCTAGCCGA
1 GATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCACATCCTGCCCCTCTAGCCGG
* * *
2153 CTGAGCACCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
66 TTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *** ** *
2218 ATACAGAGTTCATTCCCAGTCTAAGATCGAACCAAACCGAGGGTTTTGGCAGCACATGCTGGGCT
131 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTGGGCT
* * *
2283 CGGACATGTGTTGGTGCCGTATTTTTCTTCGTCGGGGCACCA----T----CA-C--CGGAGAAC
196 CGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCAACGGAGAAC
* *
2337 CTAACCGACAGCATTGGGGTTCCGG-CGATCGGGGGGGCCAGAGGGGGTGTGCGCACATGATGTG
261 CTGACCGACGGCATTGGGGTT-CGGACGATCGGGGGGGCC--AGGGGGTGTGCGCACATGATGTG
* * *
2401 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTCAC
323 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
2466 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
388 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
2531 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
453 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * *
2596 TGCATGCCAACAAAAATACAAGGATCTTGTCTACCAAGTTTGGGGCCAAAATTTCTTCTGAAAAA
518 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-TGAAAAA
* * *
2661 ATTTTAAAAAATTTTGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
582 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
2726 GCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
647 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
*
2791 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
712 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
2856 CACCCCGTCTCTCTGGCCAACGTAGTGCCCGCCCG-C-TCGTTTCGTCGGTTGGTTTAGGCATAC
777 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCGTCGTTTCGTCAGTTGGTTTAGGCATAC
* * * *
2919 GGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGA-GGTTGC-AGCAGCAA
842 GGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTACGA-CAGTAA
* ** ** * * * * *
2969 GATCGATAGCACATAGAGGGGGACTTGGTAGATCCCTGGCTTGCACATCGTGCCCCTCTAGCTGG
1 GATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCACATCCTGCCCCTCTAGCCGG
*
3034 TTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CTAGTCTAAGC
66 TTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * * * **
3098 ATATGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATTCCAGGCT
131 ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTGGGCT
* * *
3163 TGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCCTCGCTGAAGCATCAACGGAGAAC
196 CGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCAACGGAGAAC
* * *
3228 CTGATCGACGGCATTGGGGTTCGGACGATTGGGGGGGCC-GGGGGTGTGCTCACATGATGTGCGA
261 CTGACCGACGGCATTGGGGTTCGGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGA
* * *
3292 TGGGTGCTAGTACATGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTCACACC
326 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
* *
3357 CCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGG
391 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
3422 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGTTGAATTTTTTTGTGC
456 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * ** ** * *
3487 GTGCCAACAAAAATATAAGGATCACATCTACCATTTTTGGGGGAAAAAATCCTTTCGACAAAATT
521 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-GAAAAAATT
* * *
3552 TTAAAAAATCTCAAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
585 TTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
**
3617 ATG--A----A--T------TTAAGGGACCATTGTATGAATTTAAAATTCATAAAAATGGCATTG
650 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTG
* * *
3668 GCACGTAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT
715 GCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* ** *
3733 CCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGTCCGTTCGTTTCGTTGGTTGGTTTAGACA
780 CCCGTCTCTCTGGCCGACGTA--G--TGCCCGCCCG-CCG-TCGTTTCGTCAGTTGGTTTAGGCA
* * ** * * * *
3798 TACAGAGTTCATTACCAGTCTAAGACAAGACCGGATTGAGGGTTGCGACAATAG
839 TACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTACGACAGTAA
* * ** * *
3852 GATCGATAGCACGCAGAGGGGGCCCCGGTCGATCCCCGACTTGTGCATCCCAG-CCCTCTGGCCG
1 GATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCACAT-CCTGCCCCTCTAGCCG
* * ** *
3916 GCTGAGCACCCACACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAG
65 GTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
3981 CATACGAAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTACAACGGCACATGCTGGGC
130 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTGGGC
4046 TCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCG-TCGGAGCATTGC-A-GGA
195 TCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCT-GGAGCA-T-CAACGGA
* * * * **
4108 GAACCTGACCGGCGGCATTGGGGTTC-CAGTGATCGGGGGGTCGGGGGGGTGTGCGCACATGATG
257 GAACCTGACCGACGGCATTGGGGTTCGGA-CGATCGGGGGGGCCAGGGGGTGTGCGCACATGATG
* * * *
4172 TGTGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAACTC
321 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
4237 ACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-TACTTAAAGTGTATGA
386 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TTAAAGTGTCTGA
* * * *
4301 AATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTTGAATTTTTAGCTGAATGTTT
450 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
4366 TTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCTAAAACGCCTTTTGA
515 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCC-TTTGA
* * *
4430 GAAAATTTTAAAAAATCTCGAACCGTAAAAAGTATT-GAAAATCATGAAAAATAGAAAACGAGTC
578 AAAAATTTTAAAAAATCTCGAACCGCAAAAAGT-TTCAAAAATCATGAAAAATAGAAAACGAGTC
4494 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAA
642 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAA
* *
4559 TGGCATTGGCATGCAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
707 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
4624 TTGCGCATCCCGTATCTCTGGCCGGCGTAGTGTCCGCCCGCCCGTCCGCCCATTTCGTCAGTTGG
772 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CCGT-CG----TTTCGTCAGTTGG
* * * **
4689 CTTAGGCATACGG-GCTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGGGAGTAA
831 TTTAGGCATACGGAG-TTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTACGACAGTAA
** * *
4751 GATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCTTCTAGCCGG
1 GATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCACATCCTGCCCCTCTAGCCGG
* * * *
4816 TTGAGCACCCGCACGCACGTTTCATTGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGC
66 TTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG----TT--CA-T-T---C
*
4881 ATACGGAGATCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCGAGGGT
120 ---C------CAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGT
* * * * *
4945 TGCGATAGCACAAGCTAGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATC
175 TACGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATC
* ** * *
5010 GCTGGAGCATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGG
240 GCTGGAGCATCAACGGAGAACCTGACCGACGGCATTGGGGTTCGGACGATCGGGGGGGCCAGGGG
* *
5074 GTGTGCGCACATGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGTCCCCCTATCCCTCAT
305 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
5139 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGC
370 CAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
*
5204 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTT
435 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
* * *
5269 TTTAGCTGAATTTTTTTATGCAT---AAAAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCC
500 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* *** * *
5331 AAAACTCCTTAAGAAAAAAAAATAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAA
565 AAAACTCCTT-TGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
* ** **
5396 TAAAAAATC-AGTCACCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCATATGAATTT
629 TAGAAAA-CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
5460 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCC
693 AAAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
*
5525 TATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCTACCCGCTC
758 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCG----CCCGC-C
* * * *
5590 GCTCGTTTCGTCAGTTGGGTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGAATGA
814 G-TCGTTTCGTCAGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGA
*
5655 GGGTTACGACAGTAG
878 GGGTTACGACAGTAA
* * * * * * * *
5670 GATCGGCAGCACGTAGAAGGAGACCTGGTCGATCCCC-AGCTTGCACATCCCGCCCCTCTGGCTG
1 GATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGA-CTTGCACATCCTGCCCCTCTAGCCG
* **
5734 GTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCTTACAAAGTTCATTCCCAGTCTAAG
65 GTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
5799 CATACGAAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGTTACGACAGCACATGCTGGGC
130 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTGGGC
* * * ** * * * ** *
5864 TCAGGCATGTTTTGGTG-TCGAATTTTTCTTCACCGGGGCACCACCACCGGAGCATCGCCAGAGA
195 TCGGGCATGTGTTGGTGCT-GCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCAACGGAGA
*
5928 ACCTGACC-AGTGGCATTGGGGTTC
259 ACCTGACCGA-CGGCATTGGGGTTC
5952 CGGTGATGGA
Statistics
Matches: 2581, Mismatches: 302, Indels: 182
0.84 0.10 0.06
Matches are distributed among these distances:
874 121 0.05
876 1 0.00
878 10 0.00
880 104 0.04
881 99 0.04
882 55 0.02
883 108 0.04
884 157 0.06
885 309 0.12
886 7 0.00
887 2 0.00
888 326 0.13
889 1 0.00
890 3 0.00
891 40 0.02
893 1 0.00
894 1 0.00
895 14 0.01
897 1 0.00
898 5 0.00
899 413 0.16
900 1 0.00
903 2 0.00
905 3 0.00
906 1 0.00
907 1 0.00
908 1 0.00
910 1 0.00
911 1 0.00
912 1 0.00
913 3 0.00
914 4 0.00
915 243 0.09
916 6 0.00
917 1 0.00
918 214 0.08
919 307 0.12
920 3 0.00
922 1 0.00
923 8 0.00
924 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCACATCCTGCCCCTCTAGCCGG
TTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
ATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTACGACAGCACATGCTGGGCT
CGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCAACGGAGAAC
CTGACCGACGGCATTGGGGTTCGGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTGAAAAAATTT
TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGG
CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCGTCGTTTCGTCAGTTGGTTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTACGACAGTAA
Found at i:3984 original size:26 final size:26
Alignment explanation
Indices: 3954--4006 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
3944 GTTGACTTAG
*
3954 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
3980 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
4006 G
1 G
4007 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:4881 original size:26 final size:26
Alignment explanation
Indices: 4850--4925 Score: 101
Period size: 26 Copynumber: 3.2 Consensus size: 26
4840 TTGGTTGACT
*
4850 TAAGCATACAGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
4876 TAAGCATACGGAG---A-T--CAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
4896 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
4922 TAAG
1 TAAG
4926 ATCAGATCGG
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
20 18 0.42
22 1 0.02
23 2 0.05
24 1 0.02
26 21 0.49
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:4896 original size:20 final size:20
Alignment explanation
Indices: 4871--4908 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
4861 AGTTCATTCC
4871 CAGTCTAAGCATACGGAGAT
1 CAGTCTAAGCATACGGAGAT
4891 CAGTCTAAGCATACGGAG
1 CAGTCTAAGCATACGGAG
4909 TTCATTCCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.18
Consensus pattern (20 bp):
CAGTCTAAGCATACGGAGAT
Found at i:5543 original size:915 final size:918
Alignment explanation
Indices: 3975--5804 Score: 2671
Period size: 919 Copynumber: 2.0 Consensus size: 918
3965 TCATTCCCAA
* * * *
3975 TCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGACTGGACCGAGGGTTACAACGGCACATG
1 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACAACAGCACAAG
* * **
4040 CTGGGCTCGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATTGCA
66 CTAGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACA
* *
4105 GGAGAACCTGACCGGCGGCATTGGGGTTCCAGTGATCGGGGGGTCGGGGGGGTGTGCGCACATGA
131 GGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGTCCGGGGGGTGTGCGCACATGA
* * * * *
4170 TGTGTGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAAC
196 TGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
* *
4235 TCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTACTTAAAGTGTATG
261 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCACTTAAAGTGTATG
* *
4300 AAATGGGGACACTTTTCTCAAATGGTCACAAAATCTTGTACACTTTGAATTTTTAGCTGAATGTT
326 AAATGGGGACACTTTTCTCAAATGGTCAAAAAATCTTGTACACTTCGAATTTTTAGCTGAATGTT
* * **
4365 TTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCTAAAACGCCTTTTGA
391 TTTATGCAT--CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCTAAAACGCCTTAAGA
* *** ** * * *
4430 GAAAATTTTAAAAAATCTCGAACCGTAAAAAGTATTGAAAATCATGAAAAATAGAAAACGAGTCG
454 AAAAAAAATAAAAAATCTCGAACCACAAAAAGTATTAAAAATCATGAAAAATAAAAAACGAGTCA
* **
4495 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAAT
519 CCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCATATGAATTTAAAAGCCATAAAAAT
* * *
4560 GGCATTGGCATGCAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
584 GGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACAGCT
* *
4625 TGCGCATCCCGTATCTCTGGCCGGCGTAGTGTCCGCCCG-CCCG-TCCGCCCATTTCGTCAGTTG
649 TGCGCATCCCGTATCTCTGGCCGACGTAGTGCCCGCCCGTCCCGCT-CGCCCATTTCGTCAGTTG
* **
4688 GCTTAGGCATACGG-GCTTCATTCCCAGTCTAAGATCAGA-CTGGACTGAGGGTTACGGGAGTAA
713 GCTTAGGCATACGGAG-TTCATTCCCAGTCTAAGATCAGATC-GGAATGAGGGTTACGACAGTAA
* * * * *
4751 GATCGACAGCACGCAGAGGGGGACCCGACCGATCCCC-GACTTGCGCATCCTGCCCTTCTAGCCG
776 GATCGACAGCACGCAGAAGGAGACCCGACCGATCCCCAG-CTTGCACATCCCGCCCCTCTAGCCG
* *
4815 GTTGAGCACCCGCACGCACGTTTCATTGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAG
840 GTTGAGCACCCGCACGCACGTTTCATGGGTTGACTTAAGCATACAAAGTTCATTCCCAGTCTAAG
4880 CATACGGAGATCAG
905 CATACGGAGATCAG
* * * *
4894 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCGAGGGTTGCGATAGCACAA
1 TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTACAACAGCACAA
4958 GCTAGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCA
65 GCTAGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCA
* *
5022 CCGGAGAACCTGACCGGTGGCATTGGGGTTCC-GACGATCGGGGGG-CCGGGGGGTGTGCGCACA
129 CAGGAGAACCTGACCGGCGGCATTGGGGTTCCAG-CGATCGGGGGGTCCGGGGGGTGTGCGCACA
*
5085 TGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCAAG
193 TGATGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
*
5150 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGC-CATTAAAGTG
258 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAC-TTAAAGTG
* * *
5214 TCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
322 TATGAAATGGGGACACTTTTCTCAAATGGTCAAAAAATCTTGTACACTTCGAATTTTTAGCTGAA
* * *
5279 TTTTTTTATGCAT-AAAAAAAATACAAGGATCACGTCTGCCAAGTTTGGGGCC-AAAACTCCTTA
387 TGTTTTTATGCATCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCTAAAACGCCTTA
*
5342 AGAAAAAAAAATAAAAAATCTCGAACCACAAAAAGT-TTCAAAAATCGTGAAAAATAAAAAATC-
451 AGAAAAAAAAATAAAAAATCTCGAACCACAAAAAGTATT-AAAAATCATGAAAAATAAAAAA-CG
*
5405 AGTCACCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCATATGAATTTACAAGCCATA
514 AGTCACCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCATATGAATTTAAAAGCCATA
5470 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCA
579 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCA
* * *
5535 CAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCTACCCGCTCGCTCGTTTCG
644 CAGCTTGCGCATCCCGTATCTCTGGCCGACGTAGTGCCCGCCCG--T-CCCGCTCGCCCATTTCG
* **
5600 TCAGTTGGGTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCGGAATGAGGGTTACGAC
706 TCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAATGAGGGTTACGAC
* * * * ** *
5665 AGTAGGATCGGCAGCACGTAGAAGGAGACCTGGTCGATCCCCAGCTTGCACATCCCGCCCCTCTG
771 AGTAAGATCGACAGCACGCAGAAGGAGACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCTA
* * * *
5730 GCTGGTTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCTTACAAAGTTCATTCCCAGTC
836 GCCGGTTGAGCACCCGCACGCACGTTTCATGGGTTGACTTAAGCATACAAAGTTCATTCCCAGTC
5795 TAAGCATACG
901 TAAGCATACG
5805 AAGTTCATTC
Statistics
Matches: 813, Mismatches: 83, Indels: 30
0.88 0.09 0.03
Matches are distributed among these distances:
914 2 0.00
915 251 0.31
916 6 0.01
917 1 0.00
918 209 0.26
919 340 0.42
920 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (918 bp):
TCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTACAACAGCACAAG
CTAGGCTCGAGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACA
GGAGAACCTGACCGGCGGCATTGGGGTTCCAGCGATCGGGGGGTCCGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCACTTAAAGTGTATG
AAATGGGGACACTTTTCTCAAATGGTCAAAAAATCTTGTACACTTCGAATTTTTAGCTGAATGTT
TTTATGCATCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCTAAAACGCCTTAAGAAA
AAAAAATAAAAAATCTCGAACCACAAAAAGTATTAAAAATCATGAAAAATAAAAAACGAGTCACC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCATATGAATTTAAAAGCCATAAAAATGG
CATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACAGCTTG
CGCATCCCGTATCTCTGGCCGACGTAGTGCCCGCCCGTCCCGCTCGCCCATTTCGTCAGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAATGAGGGTTACGACAGTAAGATCG
ACAGCACGCAGAAGGAGACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCTAGCCGGTTGAG
CACCCGCACGCACGTTTCATGGGTTGACTTAAGCATACAAAGTTCATTCCCAGTCTAAGCATACG
GAGATCAG
Found at i:8141 original size:26 final size:26
Alignment explanation
Indices: 8112--8161 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
8102 GTCCAATCTC
8112 AGACTGGAAATGAACTCCATATGCTT
1 AGACTGGAAATGAACTCCATATGCTT
* *
8138 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGAAATGAACTCCATATGC
8162 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
AGACTGGAAATGAACTCCATATGCTT
Found at i:9049 original size:26 final size:26
Alignment explanation
Indices: 9020--9072 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
9010 CAGTTCCGAC
*
9020 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
9046 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
9072 C
1 C
9073 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:9949 original size:26 final size:26
Alignment explanation
Indices: 9913--9965 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
9903 CTGGTCTGAT
*
9913 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGAGTGGGAATGAACTCTATATG
*
9939 CTTAGAGTGGGAATGAACTCTGTATG
1 CTTAGAGTGGGAATGAACTCTATATG
9965 C
1 C
9966 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGAGTGGGAATGAACTCTATATG
Found at i:10842 original size:26 final size:26
Alignment explanation
Indices: 10813--10865 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
10803 CTGGTCCGAT
10813 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
10839 CTTAGACTGGGAATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
10865 C
1 C
10866 CTAAGTCGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:11777 original size:911 final size:904
Alignment explanation
Indices: 7258--13669 Score: 7743
Period size: 911 Copynumber: 7.1 Consensus size: 904
7248 CTGGTCCAAT
*
7258 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * * * * *
7323 CAACAAGAGGGGCGGCATGCGCAAGCTGGGGATCGACCGAGTCCCCCTCTGTGTGCT-GTCCATT
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTAGTCGATC
* * * ** * * * *
7387 CTGCTGCCACAACCTTTGGTCCAGTCCAATCTTGGACTGGGAATGAACTTCGTATGCCTAAGCCA
131 CTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
* * * * **
7452 ACCGACG-AA--A---TG-A-GCGGGC-GGCGGGCACTGCCCCGGCCAGAGAGACGGGATTCATA
196 ACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
7508 AGCCGTGGATAGATACGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTAGATGCCAATGCC
261 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* *
7573 ATTTTTATGACTTG--------TA-AAT--T--C-----CCTTCACGTGAAGTTTCATAGCAAGA
326 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* **
7620 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTT
391 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * * *
7685 TTGAAAGGA-TTTCTGGCCCTAAACTTGGTAGACGTGATCATTGTATTTTTCTTGGCATGCACAA
456 TCGAAAGGAGTTT-TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
7749 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
520 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
7814 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTATA-GAGGTGT
585 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA-AGGGGGTGT
* * **
7878 GAGTTCTCAAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCATGCATCGCA
649 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
7943 CATCA-GCTGCGCACACCCCCCCGGGCCCCC-CGATCGTCGGAACCCCAATGTCGTCGGTCAGGT
714 CATCATG-TGCGCACA-CCCCCC-GGCCCCCTCGATCGTCGGAACCCCAATGTCGTCGGTCAGGT
* * * * * * * *
8006 TCTCCGACGATGCTCCGGCAATGGTGCCCCGACGAAGAGAAATGTGTCACCAGCATATCCCCGAG
776 TCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * * * *
8071 CCCAGCATATGCTGCCGGAACCTTCGGTCCAGTCCAATCTCAGACTGGAAATGAACTCCATATG
841 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
8135 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *** *
8200 CGGCCAGAAGGGTGGGATGCGCAAGCCGGGGATCGGCTGAGTCCCCCTCTATATGCTA-TCAATC
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTAGTCGATC
* * * * * * * * **
8264 CGGCTACTGCAACCCTCAGTCTGATCTGATCCTAGACTAGGAATGAACTCTGTATGCCTAAGCCA
131 CTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
* * * * *
8329 ACTGATGAAATGAACGGGCAGGCGGGCAGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACCGGA
196 ACCGACGAAACGAGCGGGCAGGC--G--GGC--GGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * * *
8394 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATGCAAATATTCATATTTTTGCATGCC
255 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCC
8459 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
320 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* *
8524 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTATGCGGTTCAGGATTTTTTTAA
385 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGA-TTTTTTAA
* * ** *
8589 ATTTTTTTC-AGAAGGAGTTTTAGCCCCAAGGTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
449 AATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* *
8653 TGCAAAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
513 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
8718 CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
578 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * * *
8783 GGGTGTGAGTTCTCAAGGCTTGATGAGGGATAGGAGGTCAATATAAGGGTCAAGTACCAGCACCC
643 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
** * * * * * * *
8848 ATCGTGCATCATGGGCACACACCCCCCGACCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCA
708 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGTCGTCGGTCA
* * *
8913 GGTTCTCCGACGATGCTCCGACGATGGTTCCCC-AGTGAAGAAAAATGCAGCACCAGCACATGCT
773 GGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-TGAAGAAAAATGCGGCACCAGCACATGCC
* * * * *
8977 CGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCCAGTTCCGACCTTAGATTGGGAATGAACTCCG
837 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GGTCCGATCTTAGACTGGGAATGAACTCCG
9042 TATG
901 TATG
* *
9046 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
9111 CGGCCTAGAGGGGTAGGATGCGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGTGTGCTA-CCGAT
66 CGGCC-AGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTAGTCGAT
* * * ** *
9175 CCTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATACACCTAAGTC
130 CCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
* * ** * *
9240 TACCGACGAAACGAGCAGGTGGGCGTGCGGGCGGGCACTACGCCAGCCAGAGAGATC-GGATGCG
195 AACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA-CGGGATGCG
*
9304 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
259 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATG
*
9369 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAA
324 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * ** *
9434 GACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTGTTTAAAATTT
389 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
* *
9499 TTTCGAATGGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
454 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
**
9564 AAAAAATTCAAG-TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTTA
519 AAAAAATTC-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
9628 ATTCGGACACTTTAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
583 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
9693 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC-----AA----C---TACCAGCAGCCATCGC
648 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * ** *
9746 ACATCATGTGCGCACACCCCCCCGACCCCTCCGATCGTCGGTACATCAATGTCGTCGATCAGGTT
713 ACATCATGTGCGCACACCCCCCGGCCCCCT-CGATCGTCGGAACCCCAATGTCGTCGGTCAGGTT
* * * * *
9811 CTCCGGCAATGCTCCGACGATGGTGCCCCGATAAAGAAAAATACGGCACCAGCACATGCCCAAGC
777 CTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * * **
9876 ACAGCATGTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCTATATG
842 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
9939 CTTAGAGTGGGAATGAACTCTGTATGCCTAAGTCAGCCCACGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
10004 CAGCCAGAAGGGTGGGATGCGTAAGCTGGGGATCGGCCGGGTGCCCCTCTAG-GTG-TTGTCAAT
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCT-GCGTGCTAGTCGAT
* * * * * *
10067 CCTACTTCCCCAACCCTCGGTCTGGACCAATCTTAGACTGGGAATGAACTCCATATGCCAAAGCC
130 CCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
* * * *
10132 AACCGACGAAACGAGC--G--TGCGGGCAGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGC
195 AACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
10193 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
260 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* * * *
10258 CATTTGTT-TGGCTTGTAAATTAAAACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCACGGCAA
325 CATTT-TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * **
10322 GACGACTCGTTTTCTATTTTTCATGAATTTTGAAACTTTCTGCGGTTCATGATTTTTTAAAATTT
389 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
*
10387 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
454 TTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
10452 AAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCAT
519 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
10517 TTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAATATCTCAAATGCTCTTTAAGGGGGTGT
584 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
10582 CAGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCAGCCATCGCA
649 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * ** * *
10647 CATCATGTGTGCACACCCCCCCGG-CCCCTCCGATCGTCGGTACCTTAATGTTGTCGATCAGGTT
714 CATCATGTGCGCACA-CCCCCCGGCCCCCT-CGATCGTCGGAACCCCAATGTCGTCGGTCAGGTT
* * **
10711 CTCCGGCGATGCT-CTAGCGATGGTGCCCCGATGAAGAAAAATATGGCACCAGCACATGCCCGAG
777 CTCCGACGATGCTCCGA-CGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* *
10775 CCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
841 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
10839 CTTAGACTGGGAATGTACTCCGTATGCCTAAGTCGACCCATGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
10904 CGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTACT-GATC
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTAGTCGATC
* * * * **
10968 CTACTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
131 CTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
* ** * * *
11033 ACCAACGAAACGAGCGAACAGGCGGGCGGGCGGGCACTACACCGGCTAGAGAGACGGGATGCTCA
196 ACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
11098 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
261 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
*
11163 ATTTTTATGGCTTGTAAATTCATACATTGGTCCCTTAAGCC-TCACGTGAAGTTT-ATGGCAAGA
326 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
11226 CGACTCGTTTTCCTA-TTTTCATGAATTTTTGAAAACTTTTTGCGGTTTGGGAATTTTTAAAATT
391 CGACTCGTTTT-CTATTTTTCATG-ATTTTTG-AAACTTTTTGCGGTTCGGGATTTTTTAAAATT
* * * *
11290 TTTTCAAAAAAGGATTTTTTGGCCCCAAACTTGGTATATCACATGATCCTTGTAGTTTTTGTTGG
453 TTTTC--GAAAGGA-GTTTTGGCCCCAAACTTGG--TA-GACGTGATCCTTGTA-TTTTTGTTGG
*
11355 CATGCCACAAAAAACTT-AGGCTAAAAAACTCGAAGTGGTACAAGATTTTGTGA-CATTTGAAAA
511 CATG-CACAAAAAAATTCA-GCT-AAAAACTCGAAGT-GTACAAGATTTTGTGACCATTTGAAAA
* * * *
11418 AAGTGT-CACATTTCAGACACTTTAATGGCTACTTGCAGCAAACCTATAAAATCTCAAATGCTCC
572 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
11482 TTAAGGGGGTGGTGAGTTCTCGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
637 TTAAGGGGGT-GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * *
11547 AGCACCCATCGCACATCATGTGCGCACA-CCCTCGGCCCCCTCGATCATCGAAACCTCAATGCCG
701 AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGTCG
** * *
11611 TCGGTCAGGTTCTCCGACGATGCTCCGACGATGGCACCCCGACGAAGAAAAATGCGGCACTAGCA
766 TCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCA
11676 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
831 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAA
*
11741 CACCGTATG
896 CTCCGTATG
** * *
11750 CTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
11815 CGGCCAGAGGGGCGAGATGCGCAAGCCAGGGATCGGTCAGGTCCCCTTCTGCATGCTA-TCGATA
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTAGTCGATC
* * * * * *
11879 CTGCTGCTGCAACCATTGGTCTGGTCCAAAT-TTAGACTGGGAATGAACTCCATATGCCAAAGCT
131 CTGCTGCCGCAACCCTCGGTCTGGTCC-GATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
* * * * *
11943 AATCGACGAAACGAGCCGTCGGACGGGCAGGTGGGCGGGCACTACGCCGGCCTA-AGAGTCGGGA
195 AACCGACGAAACGAG-CG--GG-CAGGCGGGCGGGCGGGCACTACGCCGGCC-AGAGAGACGGGA
* ** * *
12007 TGTGCAAGCCGTGGATCGATAGGGTGGTAGGACGGTTTAGGCACATCTTCATATTTTTGCATGCC
255 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCC
12072 AATGCCATTTTTATGGCTTGTAAATTCATAC-ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
320 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * *
12136 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGTGGTTTGGGATTTTTTAAA
385 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAA
* * * * * *
12201 ATTTTTTCG-AAGGCGTCTTAGCCCCAAACTTGGTAGACATGATCCTTGTCTTTTTTTTGGCATG
450 ATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
12265 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTCGAAAAAAGTGTCC
515 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
12330 CCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTATAAGGGG
580 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * ** *
12395 GTGTGAGTTATCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTTAGGTACCAGCACCCAT
645 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
12460 CGCACATCTTTTGTGCACACCACCCCCCGACCCCC-CGATCATCGGAACCCTAATG-CTGTCGGT
710 CGCACATC--ATGTGCGCA-CACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGTC-GTCGGT
* * *
12523 CAGGTTCTCCGACGATGCTCCAACGATGGTGCCTCGATGAAGAAAAATGCAGCACCAGCACATGC
771 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGC
* * * *
12588 CCGAGCCTAGCATGTGCTACCACAAACCTCGGTCTGGTTTGATCTTGGAGTGGGAATGAACTCCG
836 CCGAGCCCAGCATGTGCTGCCGC-AACC-C--TC--G---G-TC--------CG---G---TCCG
* * *
12653 TATGCTTATAGTGGGAATGAACTCTGTATG
877 -AT-CTTAGACTGGGAATGAACTCCGTATG
* * **
12683 CTTAGAGTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTTGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
12748 CGGCCAAAGGGGTGGGATGCGTAAGTCGGGGATCGGCCGGCTCCCCCTCTGCGTGCT-GTCGATC
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTAGTCGATC
** * * *
12812 CTATTGCCCCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCATATGCCTAAACCA
131 CTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
* * * * * * * *
12877 TCCGACGAAACGAGTGGGCGGGCGGACGGGCAGGCACTATGCCGGCCAGAGAGATGGGATACGCA
196 ACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * **
12942 AGCCGTGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATCTTTCAACGTGCCAATGAT
261 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
*
13007 ATTTTTATGGCTTGTAAATTCATACTATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGC
326 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG-
* * * *
13072 ACGACTCGTTTTCTATTTTTCACGA-TTTTCAGA-TTTTTGC-GTTCGGCCATTTTTTAAAAGTT
390 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGG-GATTTTTTAAAA-TT
** * * *
13134 TAAT-GAAAGGAG-TTT-GCGCCAAACTTAGT-GACGTGAT-CTTGTATTTTTGTTGTCATGCAC
453 TTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
13194 AAACAAATTC-GCT--AAACTCGAAGTATACAAGATTTTGTGAACC--GTGAAAAAAGTGTCCCC
518 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG-ACCATTTGAAAAAAGTGTCCCC
* * * *
13254 AATTCAGACACTTTAATGCCTACTGGCAGCAAACTTGT-AAATCCTCAAATGCTCTTTAAGAGGG
582 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT-CTCAAATGCTCTTTAAGGGGG
* * *
13318 TGTGAGTTCTTGAGATTTGAGGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
646 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
13383 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTTGGAACCCCAATGTCGTCGGTCTGG-
711 GCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGTCGTCGGTCAGGT
** * * *
13447 T-T----C--T--T-CGACGATGGTGCCCCGATGAAGAAAAATATGACACCAACACATGCCCAAG
776 TCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * ** * *
13502 CCTAGCATGTGCTGCCGCAACCCTTGGTCCGATTTGATCTTAGATTGGGAATGAACTCCGTACG
841 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
13566 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTC-CGAAATGAGCGTGCGGGCGAGCAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC-CACGAAACGAGCGTGCGGGC--GCTC
* * * * *
13630 TACGTCAGCCAGAGAGGTGGGATGCGCAAGCTGTGGATCG
63 -A-GCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCG
13670 ATAGGGTGAT
Statistics
Matches: 4793, Mismatches: 590, Indels: 294
0.84 0.10 0.05
Matches are distributed among these distances:
877 166 0.03
878 2 0.00
880 1 0.00
883 75 0.02
884 4 0.00
885 6 0.00
887 33 0.01
888 428 0.09
889 5 0.00
890 1 0.00
891 2 0.00
892 215 0.04
893 134 0.03
894 105 0.02
895 1 0.00
896 1 0.00
897 1 0.00
899 4 0.00
900 362 0.08
901 12 0.00
902 27 0.01
903 41 0.01
904 260 0.05
905 293 0.06
906 233 0.05
907 136 0.03
908 22 0.00
909 68 0.01
910 219 0.05
911 689 0.14
912 212 0.04
913 105 0.02
914 66 0.01
915 144 0.03
916 30 0.01
917 2 0.00
918 1 0.00
919 15 0.00
920 33 0.01
921 5 0.00
922 132 0.03
923 24 0.01
924 3 0.00
925 4 0.00
926 29 0.01
927 7 0.00
928 19 0.00
929 136 0.03
930 54 0.01
931 28 0.01
932 5 0.00
933 193 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (904 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTAGTCGATC
CTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
ACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCC
GACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:12672 original size:26 final size:26
Alignment explanation
Indices: 12635--12709 Score: 132
Period size: 26 Copynumber: 2.9 Consensus size: 26
12625 TTTGATCTTG
12635 GAGTGGGAATGAACTCCGTATGCTTA
1 GAGTGGGAATGAACTCCGTATGCTTA
* *
12661 TAGTGGGAATGAACTCTGTATGCTTA
1 GAGTGGGAATGAACTCCGTATGCTTA
12687 GAGTGGGAATGAACTCCGTATGC
1 GAGTGGGAATGAACTCCGTATGC
12710 CTAAGTCAAC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.28
Consensus pattern (26 bp):
GAGTGGGAATGAACTCCGTATGCTTA
Found at i:13569 original size:26 final size:26
Alignment explanation
Indices: 13540--13589 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
13530 CCGATTTGAT
*
13540 CTTAGATTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
*
13566 CTTAGACTGGGAATGAACTTCGTA
1 CTTAGACTGGGAATGAACTCCGTA
13590 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:15193 original size:26 final size:26
Alignment explanation
Indices: 15157--15209 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15147 CTAGTCTGAT
15157 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
*
15183 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
15209 C
1 C
15210 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:15893 original size:887 final size:888
Alignment explanation
Indices: 13566--22945 Score: 11415
Period size: 902 Copynumber: 10.5 Consensus size: 888
13556 ACTCCGTACG
* * ** * * *
13566 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTCCGAAATGA----GCGTGCGGGCGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCGGG
* ** * * *
13627 CACTACGTCAGCCAGAGAGGTGGGATGCGCAAGCTGTGGATCGATAGGGTGATTA-GTGGGTTTG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG-GTAGGTGGGTTTA
* *
13691 GGCACATCTTCATATTTCTGCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATATAATGGTCC
130 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
13756 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * ** *
13821 CCTTTTATG-GTTTGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTCACCCCAATCTTGGTAG
260 -CTTTT-TGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
13884 ACGTGATCCTTGTATTTTTGTTGGCATGCA-TAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
323 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * *
13948 ATTTTGTGACCATTTAAAAAAAGTATCTCCATTTCAGACACTTCAATGGCTACTGGCAGCAAACC
388 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
14013 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCC
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
** * *
14078 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCC-GACCCCCCAAT
518 AATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * * * * *
14141 CATCAGAACCCCAACGTCACTGGTCAGGTTCT-C--CGA--------CGATGGTGCCCCGGCAAA
583 CATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAA
* * * * * *
14195 GAAAAATGCGGCACCAGCACATTCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCTG
648 GAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCG
* * ** * *
14260 CTCTTAGTCTGGGTTTGAACTCCGCATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAC
713 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * ** * *
14325 CTACGAAACGAGCGTGCGGGTGCTCAGCCG-GCAGAGGGGCAAGATGCGCAAGTCGGGGACCGTT
778 CCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCG-C
* *
14389 CGGGTCCCCCTCTACGCGCTGCCGATCCTGCTACCGGAACCCTCAATCTGGTTCGAT
842 CGGGTCCCCCTCTA--CGCTGCC--TACTG---CC--AACCCTCAGTCTGG-TCGAT
* * * * * *
14446 CTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACTGACGAAACA-AGCAGACGGGCAGTCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-AGAGCGGGCGGGCGGGCGG
* *
14510 GCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTCGATCGATAGGGT-GTAGGTGGGTTTA
65 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
14574 GGCACATCTTCATATTTCTACATGCCAATGCAATTTTTATGGCTTGTAAATTTATGCAATGGTCC
130 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
14639 CTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * * *
14704 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCTGAAGGAGTTCTGGCCCTAAAC-T-GTAGAC
260 CTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
14767 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTACAAACTCAAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
14832 TTTGTGACCATTTGAAAAAAATGTCCCCAATTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
14897 TAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATTGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
14962 TATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
520 TATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCCGATCA
** * * * *
15027 TCGGAACCCCAATGCCGCCGGAAAGGTTCTCCGATGATGCTCCAGCGATGGTGCCTCGGTGAAGA
585 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGA
* * * *
15092 AAAATACGACACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTAGTCTGAT
650 AAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT
*
15157 CTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
715 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * *
15222 ACGAAACAAGCGTGCGGGTGCTCAGTCGACCAGAGGGGTGGGATGCGCAAGTCGGGGATCGCCCG
780 ACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCG-CCG
*
15287 GGTCCCCCTCTACG-TG-CTACTG-CAACCCTCAGTCTGGTCCATT
844 GGTCCCCCTCTACGCTGCCTACTGCCAACCCTCAGTCTGGTCGA-T
* * *
15330 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCAGGCGGGGGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCGGG
* * *
15395 CACTACGTCGACCAGAGAGACGGGATGCGCGAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
15460 GCACATCCTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
15525 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTGATGAATTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * *
15590 TTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCGCCAAACTAGGTAGACA
261 TTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
15655 TGATCCTTGTA-ATTTTTTGGCATCCACAAAAAAATTTAGCTAAAAACTC-AAGTTGTACAAGAA
326 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG-TGTACAAG-A
* * *
15718 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACAGGAAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
15783 GTAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGAGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
15848 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
519 ATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * * * * * * *
15913 ATCGGAACCCAAATGTCGTCGGTCAGGTCCTCCGACGATGCCCCGGCAATGGTGCCTCGGTGAAG
584 ATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAG
* * * * * *
15978 AAAAATGTGGCACCAACACATGCCCAAGCTCAGCATGTGCTGCCGTAACCCTCGATCCGGTCCGA
649 AAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGA
* * ** *
16043 TCTTGGACTGGG-ATGGAACTCCGTATGCTTAGACTGGGAACGAACTCCGTATAACTCAGTCAAC
714 TCTTAGACTGGGAAT-GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * * *
16107 TCATGAAACGAGCATGCGGGTGGTTAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTAGC
778 CCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGA-TCGC
** * * **
16172 CGGGTCCCCCTCTGTG-TG-CTGCCG-CAACCCTCAGTCCAGTCTGAT
842 CGGGTCCCCCTCTACGCTGCCTACTGCCAACCCTCAGTCTGGTC-GAT
* * * *
16217 CTTAGACTGGGAATGAACTCCGTACGCATAAGCCAACCGACGAAACGAGCGGGCGGGCGGTCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCGGG
* * * * * *
16282 CATTACGCCGGCCAGAGAGGCCGGATGCGCAAGCCATGAATCGATAGGGT-GTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
16346 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTAATACATTGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
16411 TTAAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * *
16476 TTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA-TTTCTTGCCCTAAACTTGGTAGAC
261 TTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTT-TGGCCCCAAACTTGGTAGAC
*
16540 ATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
16605 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTATTGGCTACTGGCAGCAAATCGG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
16670 TAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
16735 TATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCACACCCCCCCCCGGCCCCCCCGATC
520 TATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCA-CACCCCCCGGCCCCCCCGATC
* * * * **
16800 GTCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGGCAATGGTGCCTCGGTAAAG
584 ATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAG
*
16865 AAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCTGCAA-CC-C--TC--G---G-
649 AAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGA
16920 TC-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
714 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
16969 CACGAAACGAGGGTGCGGGTGCTCAGTCGGCCAGAAGGG-GGGATGCGCAAGCCGGGGATCAGTC
779 CACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATC-GCC
** * *
17033 GGGTCCCCCTCTGTG-TG-CT-GTGGCAACCCTCAGT-TCGGTCCGAT
843 GGGTCCCCCTCTACGCTGCCTACTGCCAACCCTCAGTCT-GGT-CGAT
* *
17077 CTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAAACGAGTGAGCGGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--A--GAGC----GGGCGGG
* * * *
17142 CGGGCGGGCACTACG-CTGACCAGAGAGACGGCATGCGCAAGCTGTGGATCGATGGGGTGGTAGG
58 CGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
17206 TGGGTTTAGGCACATCTTCATATTTATGCGTGCCAATGCCATTTTTATGGCTTATAAATTCATAC
122 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * * *
17271 AATTGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTTTATATTTCACGAT
187 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * *
17336 TTTT-AAACTTTTTGTGGTT-AGGTTTTTTTTAAAATTTTTTGGGAAGGAGTTTTGGCCCCAAAC
252 TTTTGAAACTTTTTGCGGTTCAGG-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
17399 -TGGTAGACGTGATCCTTGTACTTTTTTTAGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGT
316 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
17463 GTATAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTTAGACACTTTAATGGCTAATGGCA
381 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
17527 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
446 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
17592 GGAGGCCAATATAAGGGTCAAGT-CCAGCACCCATCATACATCATGTACGCACACCCCCCGGCCC
511 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCC
** * *
17656 CCCCGATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCC-AGTGATGCTCCGGCGATGGTGCC
576 CCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGCC
* * *
17720 CCGACGAAGAAAAATGCGGCACCAGA-ACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGA
640 CCGGCGAAGAAAAATGCGGCACCA-ACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * *
17784 TCTGGTCCGATCTTA-AATTGGAATTAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCC
704 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* ** * * *
17848 TAAGTCAACCCACGAAAAGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCAGGATGTGCAAGACG
769 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCG
* * * * *
17913 GGGATCGATCAGGG-CCTCCTCTACGTGCTGCCGATCCTTCTACCTCAACCCTCAGT-TCGGTTT
834 GGGATCG--CCGGGTCCCCCTCTAC--GCT---G--CCTACT-GC-CAACCCTCAGTCT-GG-TC
17976 GAT
886 GAT
* * *
17979 CTTAGACTGGGAATGAACTCCGAATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGC--G-GG-CGGG
* ** * ** * * *
18044 TGGGCACTACACCAGCTGGAGAGACGGGATGCGCAAGTCATGGATCGATAAGGTGGTAGGTGGGT
62 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
18109 TTATGCACATCTTCATAATTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * **
18174 TCCCTTAAGCCATAACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTGTTTTTCACGATTTTCA
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * *
18239 AAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGTCCCAAACTTGGTA
257 AAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
18304 GACGTGATCCTTGTATTTTTCTTGGCATTCAAAAAAAAATTCAGCCAAAAACTCGAAGTGTACAA
322 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
18369 GATTTTGTGACCATTTGAAAGAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
387 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
18434 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
452 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
18499 CAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGACCCCCCCGA
517 CAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * * ** ** *
18564 TCACCGGAATCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGA
582 TCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGA
* * * *
18629 AGCAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCTGGTCC
647 AGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCC
*
18694 GATCTTAGA-TTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC-AAGTCAA
712 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
18757 CCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAGGGGCGGGATGTGCAAGAT-GGGGATCG
777 CCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAG-TCGGGGATC-
* * * *
18821 GTCGGGGCCTCCTCTACATCCTGCTGATCCTTCTGCCTCAACCCTCAGTCTGGTTCGAT
840 GCCGGGTCC-CC-CT-C-TAC-GCTG--CCTACTG-C-CAACCCTCAGTCTGG-TCGAT
* * *
18880 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGACCGACGAAATGA----GTGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCGGG
18941 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
19006 GTACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTACC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
19071 TTAAGCCTTCACGTGAAGTTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAA
196 TTAAGCCTTCACGTGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * ** * * *
19136 CTTTTTTCTGTTTGGGATTTTTTAAAATTCTTTT-GGAAAGATTTTTGGCCCCACACTTGGTAGA
260 CTTTTTGCGGTTCAGGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
19200 CGTGATCCTTGTATTTTTTTTAGCATGTAGAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
19265 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* ** * * * *
19330 GTAAAATATCAAATGCTCTTTAAGGGGACGTCAGTTCTCGAGGTTTGAGGAGGGACAGGAGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
19395 ATATAAGGGCTAAGTACCAGCACCCATCGTACATCATGTGCGCAC-TCCCCCGGCCCCCCCGATC
519 ATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * * * * * * **
19459 ACCGGAACCGCAATGCCGTCGGTTAGGTTCTCCGGCGATGCTCCGGTGATGGTCCCCCAACGAAG
584 ATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAG
* ** * *
19524 AAAAATGCAGCACCAACACATGCCCGAGCCCAGCATGTGCTGTTGCAACCCTCTGTGC-GGTCTG
649 AAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CTGGTCCG
*
19588 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
713 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
19653 CCACGAAACGAGCGTGCAGGTGCTCA-ACTAGCCAGAGGGGCGGGATGCGAAAGTTGGGGATCAG
778 CCACGAAACGAGCGTGCGGGTGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGTCGGGGATC-G
* * * *
19717 CCAGGTCCCCCTCTACTTGCTGCCAATCTTGCTGCCACAACCCTCGGT-TCGGACCGAT
841 CCGGGTCCCCCTCTAC--GCTG-C---C-TACTG-C-CAACCCTCAGTCT-GG-TCGAT
* * * *
19775 CTTAGACTGGGAATGAACT-CATATGCCTAAGCCAACCGACGAAATGAGCTGGCGGGTGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--AG--AGCGGGCGGGCGGG
* *
19839 CGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
62 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
19904 TTAGGTACATCTTCATATTTCTGCATTCCAATGCCATTTTTTATGGCTTGTAAATTCATACAATG
127 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACAATG
* * * * * *
19969 GTACCTTAAGCCATAACCTGAAGTTTCATGGGAAGACGACTCGTTTTCTATTTTTCACGATTTTT
191 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * *
20034 AAAACTTTTTACGGTTCAGGATTTTTTAATATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGT
256 GAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
20099 AGACGTGATCCTTGTATTTTTTTTGGCATTCAAAAAAAAATTCATCCAAAAACTCGAAGTGTACA
321 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
20164 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
20229 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
20294 CCAATATAAGGGCCAAGTACCAGCACCCATTGTACATCATGTGCGCACTCCCCCTGACCCCCCCG
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCCG
** * * * ** * *
20359 ATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCAGTTGATGCTCCGACGATGGTGCCCCGACG
581 ATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCG
* * * * * *
20424 AAG-AAAATGTGACACTAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCTGATC
646 AAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
** * * * * *
20488 CGATCTTCCA-TTGGAATGAACTCCATATGATTACACTGGGAATGAACTCCGTATGCC-AAGTTA
711 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * * * * * * *
20551 ATGCACGAAATGAGTGTGCGTGCGCTCAGCCGACCGGAGGGGCGGGATGTGCAAGAT-AGGGATC
776 ACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAG-TCGGGGATC
* * * *
20615 GGTCGGGGCCTCCTCTATGTGCTGCTGATCCTTCTGCCTCAACCCTCAGTCTGGTCTGAT
840 -GCCGGGTCCCCCTCTA----C-GCTG--CCTACTG-C-CAACCCTCAGTCTGGTC-GAT
* * * *
20675 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCAGGCGGGCGGGGGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCGGG
* * *
20740 CATTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAC
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* ** *
20805 ACACATCTTCATATTTCTGCATGCCAATGATATTTTTAGGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * * *
20870 TTAAGCCTTCACGCGAAGTTTAATGGCAAGACGACTCATTTTTTATTTTTTATGATTTTCGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* ** **
20935 TTTTTGCGGTT-AGAGATTTTTTAAAATTTTTT-TGAAAAACGTTTTCACCCCAAACTTGGTAGA
261 TTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGGTAGA
* * *
20998 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
324 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
21063 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * * * *
21128 GTAACATCCCAAATTCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGAATAGGGGGCTA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * * * *
21193 ACAAAAGGGCCAAGTACCAGCACCCATCGCACATGATGTACGCACACCCCCCTGGCGCCTCCGAT
519 ATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCC-GGCCCCCCCGAT
* *
21258 CA-CGGAAGCCCCAAT-CCTGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCAGCG
583 CATCGGAA-CCCCAATGCC-GCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCG
* * * ** * * * *
21321 AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCAAAAACCCTTGATCCGAT
646 AAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCC-GCAACCCTCGGTCTGGT
*
21386 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
710 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* ** * * *
21451 AACCCACGAAAAC-AGCATGCGGGCACCCAGCCGGCCAGAGGGGCAGGATGCGCAAG-CTGGGGA
775 AACCCACG-AAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTC-GGGGA
** ** * *
21514 TCAGTTGGGTCCCCCTCTGGGTGCTGCCAATCCTGCTGCCACAACCCTCGGTCTGGTCTGAT
838 TC-GCCGGGTCCCCCTCT--ACGCTG-----CCTACTG-C-CAACCCTCAGTCTGGTC-GAT
* * * * * * *
21576 CATAGACTGGGAATGAACTTCGTATGCCTATGCCAACCGACGAAACAAGGGGCAGGCAGGCGGGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA-AA-GAGCGGGCGGGCGGGC
** * ** *
21641 GGGCACTACACCGGCCAGAAAGATAGGATGCGCAAGCCGTGGATCGATAGGGTGGTACGTGGGTT
63 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
***
21706 TAGGCACATCTTCATATTTCTATGTGCCAATGCC-TTTTTATGGCTTGTAAATTCATACAATGGT
128 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
21770 CCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
193 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
** * ** *
21835 AACTTTTTGCATTTCAGGATTTTTT-AAATTTTTTCGGAAGGAGCTTTGGCAGCAAACTCGGTAG
258 AACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
21899 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
323 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
21964 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAACC
388 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
22029 TGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCTCAAAGTTTGATCAGGGATAGGGGGCC
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * * *
22094 AATATAAGGACCAAGTACCAGCACCCATCGCACATCTTGTGCGCACACCCCCTGGCCCCTCCGAT
518 AATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * * * * * *
22159 CATCGGAACCCTAGTGCCACCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGGTGAA
583 CATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAA
** * * * *
22224 GAAAAATATGGCACCAACACATGCCCGAGCCTAGCATGTGCTGCTGTAACCCTCGGTCTAGTCCG
648 GAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCG
* * *
22289 ATCTGACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
713 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
** * * * * * * *
22354 CCATAAAACGAACGTACGGGTGCTCAACTGGCCAGAGGGGCAGTATGCGCAAGTCGGGGATCAGC
778 CCACGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATC-GC
* * * * *
22419 CAGGTCCCCTTCTGCATGCTGCCAATCCTGTTGCCCAAACCCTCGGT-TCGGTCTGAT
842 CGGGTCCCCCTCT--ACGCTGCC--TAC---TG-CC-AACCCTCAGTCT-GGTC-GAT
* * * *
22476 CTTAGACAGGGAATGAACTCCCTATGCCTAAGCCAACCGAAGAAACGAGCAGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--AG-A-GCGGGCGGGCGGG
* * * *
22541 CGAGCACTACGTCGACCA-AGAGA-TGGATGCGCAAGCCGTGGATCGGTATATAGGGGCGGTAGG
62 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC-G---ATA-GGGTGGTA-G
* * * *
22604 TGTGGGTTTAGGTACATCTTTTATATTTCTGCGTG-CAATGCCA--TTTATGCCTTGTAAA-TCA
121 -GTGGGTTTAGGCACATC-TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
22665 TACAATGGTCCTCTT-AG-CTTCACGTGAAGTTTTCATGGC-AGACGACTCGTTTTCCTA---TT
184 TACAATGGTCC-CTTAAGCCTTCACGTGAAG-TTTCATGGCAAGACGACTCGTTTT-CTATTTTT
* *
22724 CACGATTTTCGAAACTTTTTTGGCGG-TCAGGATTTTTTTAAAATTTTTTGCGGAAGGAGTTTTG
246 CATGATTTTTGAAAC-TTTTT-GCGGTTCAGGA-TTTTTTAAAATTTTTT-CGGAAGGAGTTTTG
* * * * *
22788 GCCCGAAACTTGGTAGA--TG-TGCTTGTATTTTTTTTGGCATGCACAAAACAACTCAGCTAAAC
307 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
22850 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTCTAATTG
372 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
22915 CTACTGGCAGTAAACCTGTAAAATCTTAAAT
437 CTACTGGCAGCAAACCTGTAAAATCTCAAAT
22946 ACAAGACGTG
Statistics
Matches: 7421, Mismatches: 872, Indels: 392
0.85 0.10 0.05
Matches are distributed among these distances:
859 2 0.00
860 97 0.01
861 65 0.01
862 2 0.00
863 5 0.00
864 122 0.02
865 28 0.00
866 113 0.02
867 95 0.01
868 101 0.01
869 132 0.02
870 1 0.00
872 1 0.00
873 1 0.00
874 2 0.00
877 2 0.00
878 1 0.00
880 40 0.01
881 36 0.00
882 209 0.03
883 177 0.02
884 198 0.03
885 191 0.03
886 411 0.06
887 722 0.10
888 8 0.00
889 70 0.01
890 29 0.00
891 6 0.00
892 8 0.00
893 278 0.04
894 400 0.05
895 275 0.04
896 405 0.05
897 162 0.02
898 217 0.03
899 106 0.01
900 440 0.06
901 597 0.08
902 1158 0.16
903 278 0.04
904 150 0.02
905 44 0.01
906 23 0.00
907 13 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAGAGCGGGCGGGCGGGCGGG
CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
TTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCCGATCAT
CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAA
AAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGCCGGG
TCCCCCTCTACGCTGCCTACTGCCAACCCTCAGTCTGGTCGAT
Found at i:17823 original size:25 final size:26
Alignment explanation
Indices: 17795--17846 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17785 CTGGTCCGAT
*
17795 CTTAAATT-GGAATTAACTCCGTATG
1 CTTAAATTGGGAATGAACTCCGTATG
*
17820 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAAATTGGGAATGAACTCCGTATG
17846 C
1 C
17847 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
CTTAAATTGGGAATGAACTCCGTATG
Found at i:18725 original size:25 final size:26
Alignment explanation
Indices: 18697--18748 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18687 CTGGTCCGAT
*
18697 CTTAGA-TTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18722 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
18748 C
1 C
18749 CAAGTCAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:19628 original size:26 final size:26
Alignment explanation
Indices: 19590--19642 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19580 GCGGTCTGAT
19590 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
19616 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
19642 C
1 C
19643 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21420 original size:26 final size:26
Alignment explanation
Indices: 21391--21443 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21381 CCGATCCAAT
21391 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21417 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21443 C
1 C
21444 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:23080 original size:150 final size:150
Alignment explanation
Indices: 22809--23095 Score: 493
Period size: 150 Copynumber: 1.9 Consensus size: 150
22799 GGTAGATGTG
* *
22809 CTTGTATTTTTTTTGGCATGCACAAAACAACTCAGCTAAACACTCGAAGTGTACAAGATTTTGTG
1 CTTGTATTTTTGTTGGCATGCACAAAACAACTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
22874 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTCTAATTGCTACTGGCAGTAAACCTGTAAAAT
66 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTCTAATTGCTACTGGCAGCAAACCTGTAAAAT
*
22939 CTTAAATACAAGACGTGATC
131 CTCAAATACAAGACGTGATC
* *
22959 CTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTG
1 CTTGTATTTTTGTTGGCATGCACAAAACAACTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
23024 ACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATTGCTATTGGCAGCAAACCTGTAAAAT
66 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTCTAATTGCTACTGGCAGCAAACCTGTAAAAT
23089 CTCAAAT
131 CTCAAAT
23096 GCTCTTTAAG
Statistics
Matches: 128, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
150 128 1.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.31
Consensus pattern (150 bp):
CTTGTATTTTTGTTGGCATGCACAAAACAACTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTCTAATTGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATACAAGACGTGATC
Found at i:23661 original size:26 final size:26
Alignment explanation
Indices: 23632--23681 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
23622 CTAGTCCGAT
23632 CTTAGACTAGGAATGAACTCCGTAAG
1 CTTAGACTAGGAATGAACTCCGTAAG
*
23658 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
23682 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTAAG
Found at i:25255 original size:936 final size:936
Alignment explanation
Indices: 23658--25572 Score: 3413
Period size: 936 Copynumber: 2.0 Consensus size: 936
23648 ACTCCGTAAG
* *
23658 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGACTCGTTTTCTATTTTTTATGAT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGACTCATTTTCTATTTTTTATGAT
*
23723 TTTCAAAACTTTTTATGGTTCAAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
66 TTTCAAAACTTTTTATGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
*
23788 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACGATTCATCTAAAAACTCGAAGTG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACGATTCAGCTAAAAACTCGAAGTG
23853 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
*
23918 CAAACCAATAAAATCTTAAATGCTCTTTAAGGGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
261 CAAACCAATAAAATCTCAAATGCTCTTTAAGGGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
23983 TTCTGCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
326 TTCTGCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGT
*
24048 GAAGTTTCATGACAAGACGACTCATTTTCTATTTTTAACGTGCGCACATCATGTGTACAAGATTT
391 GAAGTTTCATGACAAGACGACTCATTTTCTATTTTTAACGTGAGCACATCATGTGTACAAGATTT
*
24113 TGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAATA
456 TGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACCGGCAGCAAACCAATA
24178 AAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
521 AAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
24243 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCTAGCCCCCGATTGCC
586 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCAACCCCCGATTGCC
* * *
24308 GGAACCCCAATGTCATTGGTCAGGTTCTCCGGCTATGCTCCGGTGATGGTGCCCCGATGAAGAAA
651 GGAACCCCAATGTCACTGGTCAGGTTCTCCGGCAATGCTCCGATGATGGTGCCCCGATGAAGAAA
* * *
24373 AATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCCTAACCCTTGGTCCAGTCTGATCT
716 AATACGACACCAGCACATGCCCGAGCCCA-CATGTGCTACCCCAACCCTCGGTCCAGTCTAATCT
**
24438 TAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCG
780 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCG
* **
24503 GCTAAAGGGGTGGGATGCGCAAG-CCGGGAATCGATTGGGTCCCACTCTGTGTGCTGTCGATCTT
845 GCTAAAGGGGTGGGATGCGCAAGTCAGGG-ATCGACCGGGTCCCACTCTGTGTGCTGTCGATCTT
* *
24567 GCTGCCACAACCTGCGGTCCGGTCTGAT
909 GCTGCCACAACCCGCGGTCCGATCTGAT
24595 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGACTCATTTTCTATTTTTTATGAT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGACTCATTTTCTATTTTTTATGAT
24660 TTTCAAAACTTTTTATGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
66 TTTCAAAACTTTTTATGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
24725 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACGATTCAGCTAAAAACTCGAAGTG
131 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACGATTCAGCTAAAAACTCGAAGTG
* *
24790 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCTTTTCAAACACTTTAATGGCTACTGGTAG
196 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
**
24855 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-GGTAGGTGGGTTTAGGCACATCTTCATAT
261 CAAACCAATAAAATCTCAAATGCTCTTTAAGGGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
24919 TTCTGCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGT
326 TTCTGCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGT
* *
24984 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGTGAGCACATCATGTGTACAAGATTT
391 GAAGTTTCATGACAAGACGACTCATTTTCTATTTTTAACGTGAGCACATCATGTGTACAAGATTT
*
25049 TGTGATCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACCGGCAGCAAACCTAA-
456 TGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACCGGCAGCAAACC-AAT
25113 AAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
520 AAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
25178 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCAACCCTCGATTGC
585 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCAACCCCCGATTGC
* *
25243 CGGAACCCCAATGTCGCTGGTCAGGTTCTCCGGCAATGCTCCGATGATGGTGCCCCGGTGAAGAA
650 CGGAACCCCAATGTCACTGGTCAGGTTCTCCGGCAATGCTCCGATGATGGTGCCCCGATGAAGAA
* * *
25308 AAATACGACACCAGCACATGCCCTATCCCACATGTGCTGCCCCAACCCTCGGTCCAGTCTAATCT
715 AAATACGACACCAGCACATGCCCGAGCCCACATGTGCTACCCCAACCCTCGGTCCAGTCTAATCT
25373 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCG
780 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCG
*
25438 GCTAAAGGGGTGGGATGCGCAAGTCAGGGATCGACCGGGTCCCCCTCTGTGTGCTGTCGATCTTG
845 GCTAAAGGGGTGGGATGCGCAAGTCAGGGATCGACCGGGTCCCACTCTGTGTGCTGTCGATCTTG
*
25503 CTGCCACAACCCGCGGTCTGATCTGAT
910 CTGCCACAACCCGCGGTCCGATCTGAT
* * *
25530 CTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGATGA
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGA
25573 AATGAGCGAA
Statistics
Matches: 935, Mismatches: 41, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
935 214 0.23
936 433 0.46
937 288 0.31
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (936 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGACTCATTTTCTATTTTTTATGAT
TTTCAAAACTTTTTATGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACGATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
CAAACCAATAAAATCTCAAATGCTCTTTAAGGGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTGCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGT
GAAGTTTCATGACAAGACGACTCATTTTCTATTTTTAACGTGAGCACATCATGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACCGGCAGCAAACCAATA
AAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCAACCCCCGATTGCC
GGAACCCCAATGTCACTGGTCAGGTTCTCCGGCAATGCTCCGATGATGGTGCCCCGATGAAGAAA
AATACGACACCAGCACATGCCCGAGCCCACATGTGCTACCCCAACCCTCGGTCCAGTCTAATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGG
CTAAAGGGGTGGGATGCGCAAGTCAGGGATCGACCGGGTCCCACTCTGTGTGCTGTCGATCTTGC
TGCCACAACCCGCGGTCCGATCTGAT
Found at i:26256 original size:190 final size:189
Alignment explanation
Indices: 25922--26294 Score: 534
Period size: 190 Copynumber: 2.0 Consensus size: 189
25912 CAAGATTTTC
* *
25922 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTAATGGCTCTTGTAGCAAACATGTAAAAT
1 TGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTAATGGCTCTGGTAGCAAACATGTAAAAT
* * * * * * *
25987 GTCAAATGCTCTTTAAGGGGGTGTAAGTTCTTGAGGTTTGATGAGGGATAGGGGGCTCATATATG
66 CTAAAATGCTATTTAAGGAGGTGTAAGTTCTCGAGGTTTGATAAGGGATAGGGGGCTCATATAAG
**
26052 GGCCAAGCACCAGCACCCATCACACATCGTGTGCGCACACCCCCCGGCCCCCCTGATTG
131 GGCCAAGCACCAGCACCCATCACACATCACGTGCGCACACCCCCCGGCCCCCCTGATTG
*
26111 TGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGC-AACCTGTAAA
1 TGACAATTTGAAAAAAGTGTCCCCATTTCAGACAC-TTAATGGCT-CTGGTAGCAAACATGTAAA
* *
26175 ATCTAAAATGCTATTTAAGGAGGTTTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGC-CAATAT
64 ATCTAAAATGCTATTTAAGGAGGTGTAAGTTCTCGAGGTTTGATAAGGGATAGGGGGCTC-ATAT
* ** * *
26239 AAGGGCCAAGTACCAGCACCCATCGTATATCACGTGCTCACACCCCCCGGCCCCCC
128 AAGGGCCAAGCACCAGCACCCATCACACATCACGTGCGCACACCCCCCGGCCCCCC
26295 CGATCATCGG
Statistics
Matches: 162, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
189 35 0.22
190 120 0.74
191 7 0.04
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (189 bp):
TGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTAATGGCTCTGGTAGCAAACATGTAAAAT
CTAAAATGCTATTTAAGGAGGTGTAAGTTCTCGAGGTTTGATAAGGGATAGGGGGCTCATATAAG
GGCCAAGCACCAGCACCCATCACACATCACGTGCGCACACCCCCCGGCCCCCCTGATTG
Found at i:26470 original size:26 final size:26
Alignment explanation
Indices: 26431--26483 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26421 CTGATCCGAT
26431 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* *
26457 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
26483 C
1 C
26484 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:27350 original size:26 final size:26
Alignment explanation
Indices: 27314--27366 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
27304 TCGGTCCGAT
* *
27314 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27340 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
27366 C
1 C
27367 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:28221 original size:26 final size:26
Alignment explanation
Indices: 28185--28234 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
28175 TGGTCTGATC
28185 TTAGACTGGGAATGAACTCCGTATAG
1 TTAGACTGGGAATGAACTCCGTATAG
*
28211 TTAGACTGGGAATGAACTCTGTAT
1 TTAGACTGGGAATGAACTCCGTAT
28235 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATAG
Found at i:28655 original size:868 final size:869
Alignment explanation
Indices: 26108--30472 Score: 4919
Period size: 891 Copynumber: 5.0 Consensus size: 869
26098 GCCCCCCTGA
* * *
26108 TTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGC-AACCTGT
1 TTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * * *
26172 AAAATCTAAAATGCTATTTAAGGAGGTTTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAAT
66 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * * *
26237 ATAAGGGCCAAGTACCAGCACCCATCGTATATCACGTGCTCACA-CCCCCCGGCCCCCCCGATCA
131 ATAAGGGCCAAGTACCAGCACCCAT-GCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCG
* * * * ** * * *
26301 TCGGAACCCCAATGCCATCGGTCAGGTTCTCTGGTGATGCTTCGAGGATGGTGCCCCGACAAAGA
195 CCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGA
* ** * *
26366 AAAATGTGGCACCAGTGCATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGG-TCTGATCCGA
260 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC-GGTCCGA
* * *
26430 TCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
324 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* * * ** * * *
26495 CATGAAACGAGCGTGCGGGCTCTCAGTCGGCCAGAGGGGTGGGATACGCAAGCCGGGGTTC-GAC
389 CA-GAAACGAGCGTGC-GGCGCTCAGCCGGCCAGA-GGGCGGGATGTGCAAGCCAGGGATCGGTC
* * * * * * *
26559 CAGGTCCCCCTCTGCGTGCGGCCGATCTTGCTGCCGCAACCCTCGATCTGATCTGATCTTAGACT
451 GA-GTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACT
* *
26624 GGGAATGAACTCCAT-TAGCCTAAGCCAACCGACGAAACGAGC-G--G-GCGGGTGGGCACTACG
515 GGGAATGAACTCCGTAT-GCCTAAGCCAACCGACGAAACGAGCGGACGAGCGGGAGGGCACTACG
* * *
26684 TCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
579 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * * * *
26749 TTCATATTTTCTGCATGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATGGTACCGTAAGC
644 TTCATA-TTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * * *
26814 CGTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACAATTTTTTAAATTTTTTG
708 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTG
* * * *
26879 TGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACATGGTAGACGTGATCC
773 CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
*
26944 TTGTATTTTTCTTCGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
838 TTGTATTTAT-TT-G-AT----------A-TC-G------------AGTGTACAAGATT
*
27003 TTGTGACCATTTGAAAAAAGTGTGCCCATGTT-AGACACTTTAATGGCTACTGGCAGCAAACCTG
1 TTGTGACCATTTGAAAAAAGTGTCCCCAT-TTGAGACACTTTAATGGCTACTGGCAGCAAACCTG
27067 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
65 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* ** * *
27132 TATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACATGCCCTCGGCCCCCCCGATC
130 TATAAGGGCCAAGTACCAGCACCCAT-GCACATCATGTGCGCACACCCCCCCGACCCCCCCGATC
* ** * *
27197 GCCGGAACCCTAATGCCACCGGTTAGGTTCTCCGACGATGCT-C--C---GGT--------GAAG
194 GCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
* ** *
27248 ACAAATGCGGCACCAGCACATGCCCGAGCGTAGCATGTGCTGCCACAACCCTCGGTTCGGTCCGA
259 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGA
* * *
27313 TCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
324 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* *** * ***
27378 CACGAAACTAGCGTGCAGGCGCTCAATTGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCAACC
389 CA-GAAACGAGCGTGC-GGCGCTCAGCCGGCCAGA-GGGCGGGATGTGCAAGCCAGGGATCGGTC
*
27443 GAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTC-AGTCCGGTCTGATCTTAGACT
451 GAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACT
* * *
27507 GGGAATGAACTCCATATACCAAAGCCAACCGACGAAACGAGCGGGCAGGCGAGCGGGAGGGCACT
515 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-A--CGAGCGGGAGGGCACT
* *
27572 ACGCCGGCCGGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCAC
576 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * * *
27637 ATCTTCATATTTCTGCATGCGAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTACCTTAA
641 ATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
27702 GCCTCCACATGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTTCA-GATTTTCGAAACTTT
706 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA-TTTTTCACGATTTTTGAAACTTT
* * * * *
27766 TTGTGGTTCGAGTTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGTCCCAAACTTGGTAGACATGA
770 TTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
27831 TCCTTGTA-TT-TTTG-T-T-G-GTGTACAAGATT
835 TCCTTGTATTTATTTGATATCGAGTGTACAAGATT
*
27860 TTGTGACCATTTGAAAAAAGGGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGT
1 TTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * * * *
27925 AACATCTCAAATGCTCTTTAAGAGGGTATGAGTTCTCGAGGTTTGATGAGGGTTATGGGGCAAAT
66 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
27990 ATAGGGGCCAAGTACCAACACCTATTGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCG
131 ATAAGGGCCAAGTACCAGCACCCA-TGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCG
* * **
28054 CCGGAACCCCAATGCCG-CTGGTCAGGTTCCCCGACGATGCTCCGACGATGGTGCCCCGGTGAAG
195 CCGGAACCCCAATGCCGTC-GATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
* *
28118 AAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGG-TCTGGTCTG
259 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC-GGTCCG
28182 ATCTTAGACTGGGAATGAACTCCGTATAG-TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
323 ATCTTAGACTGGGAATGAACTCCGTAT-GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
** * * * *
28246 CCCATGAAAACGAGTTTGCGAGCGCTCAGCCGGCCTGAGGGGTGGGATGCGCAAGCTAGGGATCG
387 CCCA-G-AAACGAGCGTGCG-GCGCTCAGCCGGCCAGA-GGGCGGGATGTGCAAGCCAGGGATCG
* * * *
28311 GTCGGGTCCTCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAG
448 GTCGAGTCC-CCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAG
* * *
28376 ACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGACGGGCGGGCA-GGCACT
512 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGAGCGGG-AGGGCACT
**
28440 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGACGGTAGGTGGGTTTAGGCAC
576 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
28505 ATCTTCATATTTCTACGTGCCAATGCCATTTATATGGCTTGTAAATTCATACAATGGTCCCTTAA
641 ATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
28570 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTT
706 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTT
* *
28635 TGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGAT
771 TGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
*
28700 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGGAAAAACTCGAAGTGTACAAGATT
836 CCTTGTA----T-TT---AT-----------TT---G--ATA-TCG-AGTGTACAAGATT
* * *
28760 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTATTGGCAGCAAACCTGT
1 TTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
28825 AAAATCTCGAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTAATCG-GGGATAGGGGGCCAA
66 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT-GAGGGATAGGGGGCCAA
* *
28889 TACAAGGGCCAAGTACCAGCA--C---C-CATCATGTGTGCACACCCCCCCGACCCCCCCGATCG
130 TATAAGGGCCAAGTACCAGCACCCATGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCG
* * * * * * *
28948 TCGAAACCCTAATACCGTCAATCAGTTTCTCCGATGATGCTCC-AGCGATGGTGCCCCGACGAAG
195 CCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAG
* *
29012 AAAAATGGGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCATCGG-TCTGGTCCG
259 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTC-GGTCCG
* *
29076 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACT-TCGTATGCCTAAGTCAA
323 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAA
* * *
29140 CCCACAAAACGAGCGTGCGGTCACTCAGCCGACCAGAGGGCGGGATGTGCAAGCCAGGGATCGGT
387 CCCA-GAAACGAGCGTGCGG-CGCTCAGCCGGCCAGAGGGCGGGATGTGCAAGCCAGGGATCGGT
* ** * * * * * *
29205 CGGGTTACCCT-TCACATGCTACCGATCCTACTACCGCAACCCTCAATCTGGTCCGATCTTAGAC
450 CGAGTCCCCCTCT-ACGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGAC
* * * * * *
29269 TGGGAATGAACTCCGTATGCCTTAGCCAACCAACGAAACAAGATGG-CGGGCGGGCGGGCACTAC
514 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CGGACGAGCGGGAGGGCACTAC
* * * *
29333 GCCAGCCAGAGAAACGGGATGCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
578 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
**
29398 CTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
643 CTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
29463 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTCTCTATTTTTCACGATTTTTGAAACTTTTTG
708 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTG
* *
29528 CGGTTCCG-GATTTTTTACAATTTTTTCGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
773 CGGTT-CGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
29592 CTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATT
837 CTTGTA------TT----T----------ATTT-G----ATA-TCG-AGTGTACAAGATT
*
29652 TTGTGACCATTTAAAAAAAGTGTCCCCA-TTGTAGACACTTTAATGGCTACTGGCAGCAAACCTG
1 TTGTGACCATTTGAAAAAAGTGTCCCCATTTG-AGACACTTTAATGGCTACTGGCAGCAAACCTG
*
29716 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAA
65 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * *
29781 TATAAGGGCCAAGTAGCAGCACCCATAACACATCATGTGCGCACACCCCCCCGACTCCACCGATC
130 TATAAGGGCCAAGTACCAGCACCCAT-GCACATCATGTGCGCACACCCCCCCGACCCCCCCGATC
* * * *
29846 GTCGGAACCCCAATGCCGTCGATCGGGTTCTCCAACGATGCTCCGACGATGGTGCACCGACGAAG
194 GCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
* *
29911 AAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCGGTTCAGTCCGA
259 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGA
29976 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
324 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* *
30041 C----A-GA---------G----G--GG-C--A-----GGATGTGCAAGTCGGGGATCGGTCGAG
389 CAGAAACGAGCGTGCGGCGCTCAGCCGGCCAGAGGGCGGGATGTGCAAGCCAGGGATCGGTCGAG
* * * * * * **
30078 TCCCCCTATGCGTTCTGCCAATCTTGCTTCCAAAACCCTCGATCCGGTCCGATCTTAGACTGGGA
454 TCCCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGA
* * * * * *
30143 ATGTACTCTGTATGCCTAAGCCAACTGACGAAATGAGCGGGCGAGCGGGAGGCGAGCACTACGTC
519 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGAGCGGGA-G-G-GCACTACGCC
* *
30208 GGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTT
581 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
30273 CATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCTCTTAAGCCTT
646 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
** *
30338 CACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGG
711 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGG
* * * * *
30403 TTCGGGATTTTTTAAATTTTTTTTGGAAGGAGTTTCGGCCCCAAACTTGGTGGACGTGATCCTTG
776 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
30468 TATTT
841 TATTT
30473 TTGTTGGCAT
Statistics
Matches: 3032, Mismatches: 321, Indels: 267
0.84 0.09 0.07
Matches are distributed among these distances:
855 1 0.00
856 55 0.02
857 170 0.06
858 1 0.00
859 1 0.00
862 4 0.00
866 2 0.00
867 7 0.00
868 253 0.08
869 113 0.04
870 128 0.04
871 56 0.02
872 341 0.11
873 1 0.00
874 3 0.00
876 1 0.00
877 1 0.00
878 1 0.00
879 1 0.00
882 1 0.00
883 261 0.09
884 6 0.00
885 1 0.00
886 1 0.00
887 2 0.00
888 1 0.00
889 4 0.00
890 167 0.06
891 441 0.15
892 195 0.06
893 47 0.02
894 193 0.06
895 52 0.02
896 110 0.04
897 52 0.02
898 2 0.00
899 206 0.07
900 147 0.05
901 1 0.00
903 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (869 bp):
TTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGC
CGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAA
AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
GAAACGAGCGTGCGGCGCTCAGCCGGCCAGAGGGCGGGATGTGCAAGCCAGGGATCGGTCGAGTC
CCCCTCTACGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGAGCGGGAGGGCACTACGCCGGCCA
GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA
GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
ATTTGATATCGAGTGTACAAGATT
Found at i:29107 original size:26 final size:26
Alignment explanation
Indices: 29078--29130 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
29068 CTGGTCCGAT
29078 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
29104 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
29130 C
1 C
29131 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:30006 original size:26 final size:26
Alignment explanation
Indices: 29977--30029 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29967 TCAGTCCGAT
29977 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
30003 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
30029 C
1 C
30030 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:31219 original size:26 final size:26
Alignment explanation
Indices: 31179--31231 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
31169 GTTGACTTAG
* * *
31179 GCATACGGAGCTCATTCCTAGTCTAA
1 GCATACAGAGCTCATTCCCAATCTAA
*
31205 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGCTCATTCCCAATCTAA
31231 G
1 G
31232 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGCTCATTCCCAATCTAA
Found at i:32101 original size:26 final size:26
Alignment explanation
Indices: 32072--32122 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
32062 GGATGACTAG
32072 GCATACGAAGTTCATTCCCAGTCTAC
1 GCATACGAAGTTCATTCCCAGTCTAC
*
32098 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
32123 AGATCGGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAC
Found at i:32522 original size:901 final size:899
Alignment explanation
Indices: 30559--34521 Score: 5661
Period size: 901 Copynumber: 4.4 Consensus size: 899
30549 CCATTTCAGA
* * *
30559 CACAACCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTAT-TAG
1 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-G
* *
30623 AAATGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAATTTT
65 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
30688 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCTTCCGA
130 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGA
* * * * *
30753 AAAAATTTAAAAAACTCTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTG
195 AAAATTTTAAAAAA-TCCCTAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
30818 TCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAAT
259 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
30883 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCATGACT
324 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACT
* * * *
30948 TGCGCATCACATCTCTCTGGCTGGCGTAGTGCCTGCCCGCTCGCCCGTCC-GCTCATTTCGTCGG
389 TGCGCATCACGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CCTGCTCATTTCGTCGG
* * * * *
31012 TCGGCTTAGGCATACGGAGTTCATTCCCAATATAAGATCTGACCAAAACCGAGGGTTGCGTTAGC
453 TTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACC-AAACCGAGGGTTACATTAGC
** * * *
31077 AGGATCGACAGCACGTGGA-GGGGACCGGCCGATCCCCGGCTTGTGCATCCCGCCCCTTTAGTCG
517 AGGATCGACAGCACGCAGAGGGGGACCAGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTAGCCG
* * *
31141 GTTAAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCTAGTCTAAG
582 GTTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAG
* ** *
31206 CATACAGAGTTCATTCCCAATCTAAGATCGGACCGGATTGAGGGTTGTGGCAGCACATGCTGGGC
647 CATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* ** * *
31271 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGATCATCACCAGAGAA
712 TCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGGAGAA
* *
31336 CCTGACCGGCAGCATTGGGGTTCCG-G--CGA----CCGGGGGGGTGTGCACATATGATGTGCGA
777 CCTGACCGGCAGCATTGGGGTTCCGAGATCGAGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
31394 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
841 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
31453 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTCTAA
1 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
31518 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
66 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
31583 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCCGAA
131 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
* * * *
31648 GAAATTTTAAAAAATCCCTAACCGCAAAAAGTTTCGAAAATCCTGAAAAAGAGAAAACGAGGCGT
196 -AAATTTTAAAAAATCCCTAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
**
31713 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAAAATTGTATGAATTTACAAGCCATAAAAATG
260 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
31778 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-AGCT
325 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGA-CT
*
31842 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCT-CTCATTTCGTCGGT
389 TGCGCATCACGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCATTTCGTCGGT
* * * *** *
31906 TGGCTTAGGCGTACGGAGTTCATT-CCAAGTCTAAGATCAGCCCAGACCGAGGGTTACGGCAGCG
454 TGGCTTAGGCATACGGAGTTCATTCCCAA-TCTAAGATCAGACCAAACCGAGGGTTACATTAGCA
* * * * *
31970 GGATCGACAGCACGCAGAGGGGGACCCAGCTGATCCCCGGCTTGCGCATCCCACCCCTCTGGTCG
518 GGATCGACAGCACGCAGAGGGGGA-CCAGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTAGCCG
* * * * * * * *
32035 GTTCAGCACCCGCACGCTTGTTTCATGGGATGAC-TAGGCATACGAAGTTCATTCCCAGTCTACG
582 GTTGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAG
* * * *
32099 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTACGGCAGCACATGCTGGGC
647 CATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * *
32164 TCGAGCATGTG-TCGGTG-TCGCATTTTTTTTCACCGGGGCACCATCACCAGAGCATCGCCGGAG
712 TCGGGCATGTGCT-GGTGCT-GCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGGAG
* *
32227 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGAGGGGCCGGGGGGTGTGTGCACATGATGTG
775 AACCTGACCGGCAGCATTGGGGTTCCGA-GATC-GAGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
32292 CAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACT
838 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
32354 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
1 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
32419 AATGGGGACACTTTCTTAAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
66 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
32484 TTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
131 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCG-A
* *
32549 AAAATTTTAAAAAATCCCTAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT
195 AAAATTTTAAAAAATCCCTAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
32614 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
260 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
32679 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACTT
325 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACTT
* * * * *
32744 GCGCATCACGTCTCTCTGGCTGGCGTAGTGCCCGTCTGCCCGCTCGCCTGCTCGTTTCGTCGGTT
390 GCGCATCACGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCATTTCGTCGGTT
* *
32809 GGCGTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTGCATTAGCAGG
455 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTACATTAGCAGG
* ** *
32874 ATCGGCAAG-ACGTGGAGGGGGACCAGCCGATCCCCGGCTTGTGCATCCTGCCCCTCTAGCCGGT
520 ATCGAC-AGCACGCAGAGGGGGACCAGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTAGCCGGT
* *
32938 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGCA
584 TGAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGCA
* *
33003 TACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTC
649 TACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * *
33068 GGGCATGTGCTGGTGCTGTATTTTTCTTCACCGAGGCACCATAACCGGAGCATCACCGGAGAACC
714 GGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGGAGAACC
** *** * *
33133 TGACCAACAATGTTGGGGTTCCGACGAACAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
779 TGACCGGCAGCATTGGGGTTCCGA-GATC-GAGGGGCC-GGGGGGTGTGCGCACATGATGTGCGA
* *
33198 TTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACT
841 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
33257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTTGCTACCAGCAGCAATTAAAGTGTCTGA
1 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
33322 AATGGGGACACTTTTTTCAAATGGTCACGAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTT
66 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
33387 TTGTGCATGCCAACAAAAATAAAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAA
131 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
* * * * * *
33452 AAATTTT-AAAAATCTCGAACTGCAAAAACTTTCAAGAATCGTGAAAAATAAAAAACGAGTCGTC
196 AAATTTTAAAAAATCCCTAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
33516 TTGCCATGAAACTACACGTGAAGGCTTAAGGGACCTTTGTGTGAATTTACAAGCCATAAAAATGG
261 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
33581 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
326 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACTTG
* * * *
33646 CGCATCCCGTCTCTCTGGCC-GAGTAGTGCCCGCCCGTCCGCCCGCCTGCTCATTTCGTCGATTG
391 CGCATCACGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCATTTCGTCGGTTG
* ** * * * *
33710 GCTCAGGCATAAAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACAATAGCAGGA
456 GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTACATTAGCAGGA
* * ** * *
33775 TCGACAGTACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCTTGCCCCTTTGGCCGGTT
521 TCGACAGCACGCAGAGGGGGACCAG-CCGATCCCCGGCTTGTGCATCCCGCCCCTCTAGCCGGTT
* * * *
33840 GAGCCCCCGTACACTCGTTTCATGGGTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAAGCAT
585 GAGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGCAT
* * * *
33905 ACGGAGTTCAATCCCAGTCTACGATCGGACCGGACCGAGGGTTGCGGCAGCAGATGCTGGGCTCG
650 ACGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * *
33970 GGCATGTGTTGGTGCTGCATTTTTCTTCACCGGAGCACCATCGCCGGAGCATCACCGGAGAACCT
715 GGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGGAGAACCT
* ** * *
34035 GATCGGTGGCATT-GGGTTCCGGAGGTCGAGGGGGCCGGGGGGTGTGCGGACATGATGTGCGATG
780 GACCGGCAGCATTGGGGTTCC-GAGATCGA-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
*
34099 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
843 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
34156 CACA-CCCCTTAAAGAGCATTTGAGATTTTAACAAAGTTTGCTGCCAGTAGCCATTAAAGAGTCT
1 CACACCCCCTTAAAGAGCATTTGAGATTTT-AC-AGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
34220 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA-ATTTTAGCTGAATTT
64 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * *
34284 TTTTGTGCATGCCAACAGAAATACAAGGAACCACATTTTACCAAGTTTCGGGTCAAAAAATCCTT
129 TTTTGTGCATGCCAACAAAAATACAAGG-ATCAC-GTCTACCAAGTTT-GGGGCCAAAAATCCTT
* * * * *
34349 CTGGAAAAAATTTAAAAAAT-CTTGAACCGTAAAAAG-TTCAAAAAAATCGAGAAAAAATAGAAA
191 C-CGAAAAATTTTAAAAAATCCCT-AACCGCAAAAAGTTTC--AAAAATCGTG-AAAAATAGAAA
* *
34412 ATGAGTCGTCTTGCCATTGAAGACTCTCACCGGGAAGGCTTAAGGGACCATTGTATGAATTATAC
251 ACGAGTCGTCTTGCCA-TGAA-ACT-TCA-CGTGAAGGCTTAAGGGACCATTGTATGAATT-TAC
* *
34477 AAGCCATACAAAATGGCATTGGGTCATTGCAAAAATATGAAGATG
311 AAGCCATA-AAAATGGCATT-GG-CA-CGCAGAAATATGAAGATG
Statistics
Matches: 2743, Mismatches: 275, Indels: 81
0.89 0.09 0.03
Matches are distributed among these distances:
892 37 0.01
893 217 0.08
894 450 0.16
895 14 0.01
897 1 0.00
898 27 0.01
899 130 0.05
900 201 0.07
901 980 0.36
902 280 0.10
903 279 0.10
904 15 0.01
905 8 0.00
906 25 0.01
907 4 0.00
908 3 0.00
909 2 0.00
910 28 0.01
911 11 0.00
912 11 0.00
913 2 0.00
914 2 0.00
915 16 0.01
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAA
AAATTTTAAAAAATCCCTAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACTTG
CGCATCACGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCTGCTCATTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCGAGGGTTACATTAGCAGGA
TCGACAGCACGCAGAGGGGGACCAGCCGATCCCCGGCTTGTGCATCCCGCCCCTCTAGCCGGTTG
AGCGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGCATA
CGGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGGAGAACCTG
ACCGGCAGCATTGGGGTTCCGAGATCGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
Found at i:33014 original size:26 final size:26
Alignment explanation
Indices: 32974--33026 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32964 GTTGACTTAG
*
32974 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
*
33000 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGCTCATTCCCAATCTAA
33026 G
1 G
33027 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAATCTAA
Done.