genome.fa.s255.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168080.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_328, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34399

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235--286	26	2.0	26	92	7	88	30	21	19	28	1.97
785--837	26	2.0	26	89	7	81	30	28	16	24	1.97
2039--2345	158	1.9	159	81	2	366	19	24	30	25	1.98
2319--2371	26	2.0	26	82	7	63	32	16	16	33	1.92
2515--2567	26	2.0	26	100	0	106	26	30	20	22	1.98
2604--3402	159	5.0	159	81	8	823	17	28	32	22	1.96
2541--3221	317	2.1	317	82	6	862	17	28	31	21	1.97
3069--3476	169	2.4	169	82	5	459	19	26	31	22	1.98
4267--4319	26	2.0	26	88	0	79	26	24	20	28	1.99
4437--4796	158	2.3	159	77	7	383	21	27	28	21	1.99
4768--4820	26	2.0	26	89	7	81	26	22	20	30	1.98
4860--5306	158	2.8	156	79	7	483	19	29	28	22	1.98
5282--5332	26	2.0	26	88	0	75	27	23	17	31	1.97
6197--6249	26	2.0	26	96	0	97	26	28	20	24	1.99
6223--6722	157	3.2	155	73	6	434	19	27	29	23	1.98
7418--7470	26	2.0	26	92	0	88	28	28	18	24	1.98
7444--7942	157	3.2	155	79	5	493	20	28	29	21	1.98
8233--8259	13	2.1	13	100	0	54	0	29	33	37	1.58
8329--8824	158	3.1	158	76	5	536	18	27	30	23	1.98
8798--8850	26	2.0	26	96	0	97	24	26	20	28	1.99
15010--15062	26	2.0	26	89	7	81	32	24	15	28	1.95
15220--15270	26	2.0	26	88	0	75	25	23	21	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15941--15992	26	2.0	26	88	7	79	26	23	19	30	1.98
16674--16726	26	2.0	26	89	7	81	24	24	20	30	1.99
17689--17741	26	2.0	26	89	7	81	28	26	18	26	1.98
18682--18734	26	2.0	26	85	7	72	30	22	18	28	1.98
18890--18942	26	2.0	26	88	0	79	28	26	18	26	1.98
19233--19284	26	2.0	25	96	3	95	26	23	21	28	1.99
19987--20375	159	2.4	158	74	6	372	19	25	31	22	1.98
21647--21994	185	1.9	185	87	1	520	18	27	31	22	1.97
22529--22607	26	3.0	26	90	3	124	29	21	18	30	1.97
22751--22803	26	2.0	26	85	7	72	30	22	16	30	1.96
23889--24183	159	1.9	158	81	2	367	20	28	29	22	1.98
25181--25232	26	2.0	26	88	7	79	28	25	17	28	1.97
25390--25442	26	2.0	26	92	0	88	26	26	20	26	1.99
25455--25756	157	1.9	158	85	4	414	17	25	32	24	1.97
25732--25782	26	2.0	26	88	7	77	27	23	15	33	1.95
26535--26587	26	2.0	26	86	13	74	26	24	20	28	1.99
30618--30670	26	2.0	26	89	7	81	28	26	18	26	1.98
30644--31135	158	3.1	157	78	2	529	19	27	30	23	1.98
31119--31197	26	3.0	26	90	3	124	29	22	18	29	1.98
31511--31563	26	2.0	26	89	7	81	26	20	20	32	1.98
33291--33342	26	2.0	26	92	7	88	26	25	19	28	1.98
33498--33550	26	2.0	26	92	0	88	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33531--34022	159	3.1	156	79	7	546	18	27	30	22	1.97

Tables:   1

The End!