genome.fa.s256.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168081.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_329, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34391

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43--901	180	4.8	179	75	8	653	39	9	9	42	1.70
1354--1397	20	2.1	21	84	12	56	45	2	0	52	1.13
1813--1858	21	2.2	20	88	3	65	47	0	2	50	1.13
2161--2204	18	2.4	19	81	14	56	47	0	2	50	1.13
2660--2719	22	2.7	22	80	12	61	48	0	0	51	1.00
3085--3137	13	3.9	13	82	12	54	50	0	0	49	1.00
3086--3143	9	6.8	9	76	13	52	51	0	1	46	1.11
4789--4829	14	2.9	14	92	3	55	39	12	4	43	1.63
4798--4829	14	2.3	14	100	0	64	34	12	6	46	1.67
4961--4994	15	2.2	16	89	5	52	50	0	0	50	1.00
5085--5134	15	3.3	15	74	23	50	44	2	0	54	1.11
5667--5711	14	3.1	14	80	3	54	51	2	0	46	1.13
7652--7819	43	3.9	43	78	11	189	32	17	14	35	1.90
7847--7970	21	5.6	21	70	19	83	34	13	11	40	1.81
7841--7974	22	6.0	22	76	11	123	35	13	11	39	1.80
7847--7980	46	3.0	47	79	9	136	35	12	11	41	1.79
9007--9049	15	2.9	16	83	10	56	46	4	0	48	1.22
8963--9042	38	2.1	38	81	4	90	42	6	1	50	1.35
9504--9542	19	2.1	18	90	4	60	35	5	5	53	1.45
9630--9672	15	2.9	15	80	16	54	44	0	0	55	0.99
9717--9802	10	7.5	12	69	24	53	48	1	1	48	1.16
9845--9882	20	1.9	20	94	0	67	44	0	7	47	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9997--10051	23	2.4	23	77	14	60	52	1	1	43	1.22
10204--10237	18	1.9	17	88	5	50	41	2	8	47	1.50
10901--10939	19	2.1	18	90	4	60	56	0	0	43	0.99
11220--11270	27	2.0	25	88	7	75	50	1	1	45	1.24
11354--11392	19	2.0	20	85	14	55	66	5	2	25	1.25
14378--14494	17	6.8	17	66	26	61	47	0	0	52	1.00
14365--14494	34	3.8	33	72	15	95	47	0	0	52	1.00
14367--14484	42	2.7	43	73	13	107	48	0	0	51	1.00
14387--14493	25	4.3	26	71	18	77	49	0	0	50	1.00
14384--14485	13	8.2	13	69	23	51	49	0	0	50	1.00
14389--14501	31	3.6	31	73	16	83	48	0	0	51	1.00
14457--14507	25	2.2	24	82	10	61	47	1	0	50	1.12
14683--14746	25	2.8	22	68	13	56	53	0	1	45	1.10
15154--15197	15	3.0	15	76	3	54	47	2	0	50	1.13
15282--15340	28	2.0	31	80	9	70	54	5	1	38	1.33
14962--15600	312	2.1	311	99	0	1260	49	4	4	41	1.41
15466--15509	15	3.0	15	76	3	54	47	2	0	50	1.13
15852--15903	24	2.2	24	83	10	63	50	1	7	40	1.42
16316--16380	18	3.4	19	70	16	53	44	1	1	52	1.19
16346--16426	21	4.0	21	66	23	57	43	0	1	55	1.07
16367--16412	17	2.6	18	80	16	60	41	0	2	56	1.11
16833--16868	12	3.0	13	80	19	51	36	0	0	63	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16796--16873	11	7.0	12	72	15	60	46	1	0	52	1.08
16832--16894	22	3.0	22	79	9	60	47	0	1	50	1.10
16867--16911	19	2.4	19	85	10	58	55	0	2	42	1.12
16796--16908	55	2.1	55	80	12	126	49	0	0	48	1.13
16786--16922	23	5.8	23	67	26	65	51	1	0	45	1.15
17088--17129	21	1.9	23	85	9	61	54	4	0	40	1.21
17384--17461	17	4.5	17	72	13	54	52	1	2	43	1.23
17992--18059	25	2.8	24	72	16	59	52	0	0	47	1.00
18014--18044	12	2.5	13	89	10	55	45	0	0	54	0.99
18023--18053	16	1.9	16	93	0	53	48	0	0	51	1.00
19040--19093	20	2.7	20	80	8	56	53	0	0	46	1.00
19289--19412	13	9.8	13	66	18	57	48	3	3	45	1.34
19336--19435	41	2.5	38	80	15	96	50	1	1	48	1.14
19375--19426	26	2.0	26	85	11	70	55	0	0	44	0.99
19505--19553	22	2.3	21	86	10	64	46	4	6	42	1.47
19525--19567	16	2.6	17	82	10	54	48	0	4	46	1.22
20294--20367	29	2.7	29	77	14	75	55	2	0	41	1.14
20563--20695	62	2.1	62	78	10	139	46	2	2	48	1.26
20595--20695	31	3.3	31	68	15	75	47	1	0	49	1.19
21412--21470	23	2.4	25	83	5	77	49	3	1	45	1.28
21604--21679	31	2.6	28	76	17	82	43	2	5	48	1.39
21746--21805	10	6.0	10	74	11	52	50	1	1	46	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21747--21805	21	2.9	20	85	9	75	49	1	1	47	1.21
22012--22068	26	2.2	26	82	14	73	54	3	0	42	1.17
22015--22078	27	2.4	27	79	10	69	54	3	0	42	1.16
22148--22189	21	2.0	21	86	9	59	40	2	0	57	1.12
22201--22234	16	2.1	16	88	0	50	55	0	0	44	0.99
22203--22256	22	2.5	23	82	8	60	61	1	0	37	1.07
22563--22599	14	2.8	14	84	8	51	56	0	0	43	0.99
24415--24463	25	2.1	25	85	11	68	57	2	0	40	1.10
25916--25992	27	2.8	27	74	9	66	57	1	2	38	1.21
26109--26151	16	2.9	15	80	13	54	48	0	2	48	1.14
26370--26439	20	3.4	19	71	13	59	42	2	5	48	1.41
26447--26488	17	2.4	18	84	8	59	35	0	2	61	1.09
27361--27431	19	3.5	19	69	14	52	52	0	4	43	1.20
27450--27483	15	2.2	16	89	5	52	50	0	0	50	1.00
27574--27623	15	3.3	15	74	23	50	44	2	0	54	1.11
29280--29381	42	2.5	40	80	15	111	43	1	2	51	1.27
30632--31589	180	5.3	179	75	7	676	39	8	9	42	1.68
30632--31442	360	2.2	362	78	5	802	40	9	8	41	1.68
31618--32458	180	4.7	178	75	11	522	39	9	9	42	1.69
30762--32433	835	2.0	835	98	0	3211	38	9	9	42	1.69
32879--32922	20	2.1	21	84	12	56	45	2	0	52	1.13
33341--33386	21	2.2	20	88	3	65	47	0	2	50	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33629--33683	27	2.0	27	85	7	74	49	3	1	45	1.30

Tables:   1

The End!