genome.fa.s26.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167851.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_121, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77459

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3149--3198	17	2.9	17	81	0	64	54	0	0	46	1.00
3157--3213	18	3.2	18	80	2	53	45	0	0	54	0.99
3710--3750	1	41.0	1	100	0	82	0	0	0	100	0.00
5644--5682	19	2.1	19	85	0	51	56	25	5	12	1.57
11491--11519	11	2.7	11	94	5	51	0	6	0	93	0.36
13827--13880	25	2.2	25	86	0	72	38	5	35	20	1.76
14087--14129	11	3.9	11	90	0	68	18	0	30	51	1.47
14086--14132	22	2.1	22	96	0	85	23	0	29	46	1.52
16276--16320	24	2.0	24	84	16	62	53	6	2	37	1.40
16772--16845	38	2.0	37	89	5	114	28	12	2	56	1.49
23442--23485	2	22.0	2	95	0	79	52	0	0	47	1.00
23442--23494	10	5.3	10	95	0	70	50	0	0	49	1.00
23628--23668	23	1.9	20	85	14	55	41	0	0	58	0.98
23849--24149	104	2.9	103	90	1	469	31	13	11	42	1.81
26630--26702	36	2.0	36	94	0	128	34	1	8	56	1.38
26630--26688	20	3.2	20	65	18	54	35	1	8	54	1.41
26635--26716	36	2.3	36	87	4	112	37	2	4	54	1.35
37791--37857	33	2.0	33	100	0	134	43	14	5	35	1.71
39437--39462	2	13.0	2	100	0	52	50	0	0	50	1.00
45474--45674	41	4.8	42	83	6	248	23	12	20	43	1.86
45474--45671	83	2.4	82	85	4	263	23	12	20	43	1.85
46337--46533	101	2.0	100	88	3	297	35	8	15	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47070--47107	17	2.2	17	86	9	51	81	0	10	7	0.87
47137--47202	25	2.6	27	82	17	81	48	7	7	36	1.60
47643--47763	56	2.1	57	82	7	149	59	6	13	20	1.56
50037--50269	61	3.9	58	76	11	213	35	12	6	45	1.68
50034--50269	59	4.0	60	76	9	216	36	12	6	44	1.67
50673--50713	13	2.9	15	75	14	50	0	51	0	48	1.00
51045--51089	21	2.1	21	88	8	65	8	0	11	80	0.92
52040--52096	21	2.8	20	83	2	69	35	21	10	33	1.87
52040--52079	21	1.9	21	94	0	71	35	22	10	32	1.87
51999--52217	80	2.8	80	82	6	221	31	16	13	37	1.88
52223--52315	46	2.0	47	83	6	118	35	12	11	39	1.80
53447--53522	9	8.1	9	95	4	125	10	11	0	77	0.99
53447--53572	20	6.6	19	81	15	122	9	15	0	75	1.04
53447--53529	34	2.3	34	87	10	112	12	12	0	75	1.04
53454--53572	9	12.6	9	79	7	85	9	14	0	76	1.01
53942--53988	8	5.9	8	75	9	51	0	14	4	80	0.85
53940--53989	14	3.4	14	78	21	57	0	14	4	82	0.82
57563--57743	61	3.0	58	80	9	211	38	12	3	45	1.60
57554--57743	59	3.2	60	81	7	208	37	12	5	44	1.64
58141--58177	13	2.7	14	84	16	51	0	54	0	45	1.00
58135--58178	23	1.9	23	85	0	61	0	52	0	47	1.00
58383--58407	10	2.5	10	100	0	50	60	8	0	32	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58966--58999	16	2.1	16	94	0	59	0	14	0	85	0.60
59071--59133	26	2.3	26	76	13	65	33	0	3	63	1.10
59095--59142	3	15.7	3	83	12	62	33	0	2	64	1.05
59090--59143	11	4.6	12	71	19	51	33	0	1	64	1.04
59512--59564	25	2.1	25	82	6	63	39	5	16	37	1.73
59583--59645	31	2.1	30	85	8	83	30	22	22	25	1.99
59694--59738	19	2.4	19	96	0	81	24	28	22	24	1.99
59957--59989	5	6.6	5	100	0	66	18	42	39	0	1.50
60079--60519	156	2.8	156	98	0	855	29	14	18	38	1.90
63807--63840	1	34.0	1	100	0	68	100	0	0	0	0.00
64232--64292	8	7.1	8	76	12	59	80	1	14	3	0.92
64232--64272	13	3.2	13	86	13	59	87	2	9	0	0.62
64223--64292	17	4.0	17	77	5	68	78	1	15	4	0.98
65472--66067	41	14.4	40	91	3	786	23	17	23	34	1.96
65492--66067	82	7.0	82	93	1	931	23	17	24	34	1.96
65492--66067	247	2.3	247	93	1	967	23	17	24	34	1.96
66099--66224	1	126.0	1	72	0	81	84	9	0	4	0.79
66806--66873	12	4.6	14	74	15	50	79	7	2	10	1.03
66893--66925	5	6.6	5	100	0	66	0	39	42	18	1.50
67237--67300	31	2.1	31	91	5	103	25	20	23	31	1.98
67741--67788	3	15.7	3	83	12	62	64	2	0	33	1.05
67740--67793	12	4.6	12	75	15	51	64	1	0	33	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67748--67825	25	3.1	26	78	15	67	60	5	0	34	1.19
67884--67920	17	2.2	17	95	4	67	86	0	13	0	0.57
68096--68217	1	122.0	1	76	0	100	4	0	8	86	0.72
68099--68214	15	7.9	14	79	12	119	4	0	8	86	0.74
68083--68217	52	2.7	52	84	11	165	5	0	8	84	0.81
68224--69024	41	19.5	41	92	1	1264	34	24	17	22	1.96
68224--69024	165	4.9	165	92	1	1306	34	24	17	22	1.96
68224--69044	206	4.0	207	93	1	1343	34	24	17	23	1.96
70210--70268	8	7.1	8	75	12	57	3	15	1	79	0.94
70230--70276	12	3.8	12	78	16	51	2	10	2	85	0.78
70234--70269	14	2.5	15	90	4	56	0	8	2	88	0.59
70660--70687	1	28.0	1	100	0	56	0	0	0	100	0.00
73967--74261	156	1.9	156	94	1	520	38	17	14	29	1.89
74334--74366	5	6.6	5	100	0	66	0	39	42	18	1.50
77121--77173	15	3.3	15	76	19	54	81	0	7	11	0.88
77133--77183	14	3.6	13	78	21	50	74	0	11	13	1.07
77139--77219	8	10.1	8	76	19	80	71	0	16	12	1.14
77165--77226	17	3.5	18	72	26	60	69	0	17	12	1.19

Tables:   1

The End!