Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168089.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_336, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 34038
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Found at i:6350 original size:26 final size:26
Alignment explanation
Indices: 6314--6366 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6304 CTGGTCTGAT
* *
6314 CTTAGTCTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6340 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6366 C
1 C
6367 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:7306 original size:898 final size:894
Alignment explanation
Indices: 5566--17083 Score: 13024
Period size: 886 Copynumber: 13.0 Consensus size: 894
5556 ATGTGTTGTT
* * *
5566 GATCCTACTACCGT-AACCCTCAGTCTGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGGCC
1 GATCCTGCTACC-TCAACCCTCAGTCCGATCT-GATCTTAGACTGGGAATGAACTCCGTAT-GCC
* * * * *
5629 -AAGCCAACCGACAAAATGAGCGGGCGAGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCCCAA
63 TAAGCCAACCGACGAAACGAGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
* * **
5693 GCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGGTATGCCAATGCC
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
* *
5758 ATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCATGTTAAGTTTCATGGCAAGA
192 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * * *
5823 CGATTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGGGA-TTTTTTAAAATTTT
257 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAA-TTT
* * *
5887 TTTCAGAAAGAGATTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
321 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
5952 AAAATATTTAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCAT
386 AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
6017 TTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGT
451 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
6082 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACG
516 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
6147 CATCATGTGAGCACATCCCCCCCGCCCCCCTAATCG-CTGAAACCCCAATGCCGTCGGTCAGGTT
581 CATCATGTGCGCACA-CCCCCCCGCCCCCC-AATCGTC-GGAACCCCAATGCCGTCGGTCAGGTT
* * * * *
6211 CTCCAGCGATGCTCTGACGATGGTGCCCTGAGCA-AAAAAAAATGCGGCACCAGCACATGCCTGA
643 CTCCGGCGATGCTCCG-CGATGGTGCCCCG-GGAGAAAAAAAATGCGGCACCAGCACATGCCCGA
* * * ** *
6275 GCCTAGCATGTGCACTCGCAACCCTCGGTCTGGTCTGATCTTAGTCTGGGAATGGACTCCGTATG
706 GCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATG
6340 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
771 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
6405 CGGCTAGAGAGGCAGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCCTGCGTGCTACC
836 CGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCCTGCGTGCTGCC
* * * *
6464 GATCCTACTACCTCAACCCTCAGTCCGATCTGATTTTAGACTAGGAATGAACTTCGTATGCCTAA
1 GATCCTGCTACCTCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
6529 GCCAACCGACGAAATGAGCTGGCCGACGGGCACTACGCCGGCCAGAGAGGTGAGATGCGCAAGCC
66 GCCAACCGACGAAACGAGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* *
6594 GTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGATGCCAATGCCATT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
6659 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* *
6724 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTCTTTTAAAATTTTTTC
260 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTC
* ** *
6789 AGAAGGAGTTTTGTCCCTGAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
325 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * **
6854 AATTCAGCTAAAAGCTCGAAGTGTACAGGATTTTGTGATCATTTGAAAAAAAGTGTCCTTATTTC
390 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTC
* * *
6919 AGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAC
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
6984 TTCTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
7049 CATGTGCACACAACCCCCCCGCCCCCCAATCGTCAGAACCCCAATGTCGTTGATCAAGTTCTCCG
584 CATGTGCGCAC-ACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * *
7114 GCAATGCTCCAGCAATGGTGCCCCGGGAGAAAAAAAATGTGGCACCAGTATC-TGCCCGAGCCCA
648 GCGATGCTCC-GCGATGGTGCCCCGGGAGAAAAAAAATGCGGCACCAGCA-CATGCCCGAGCCCA
* * * * *
7178 GCATGTGCACCCACAACCATCGGTCCGGTCCGATCTTACACTGGGAATGAACTCTGCATGCTTAG
711 GCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAG
* * * *
7243 ACTGGGAATGAACTTCGTTTGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTTAGCCGGCC
776 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * *
7308 AGAGGGGCAGGATGTGCAAG-TCGGGGATCGATCGGGTCCCCCCCTACGTGCTGTC
841 AGAGGGGCAGGATGCGCAAGCT-GGGGATCGGTCGGGT-CCCCCCTGCGTGCTGCC
* * * * * * * *
7363 GATCTTGTTGCCACAACCCTCAATCTGATCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAA
1 GATCCTGCTACCTCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
7428 GCCATCCGATGAAACGAGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGAT-CACAAGCC
66 GCCAACCGACGAAACGAGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
*
7492 GTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAATTT-TGCCATGCCAATGCCAT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTTCTGCCATGCCAATGCCAT
* * * *
7556 TTTTGTGGCTTGTAAATTCATGCAATGATCCATTAAGCCTTCATGTGAAGTTTCATGGCAAGAC-
194 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * *
7620 ATCTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTACGAGATTTTTTTAAAACTTTT
259 A-CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTT
* * *
7685 TC---AGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCATAAA
323 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
7747 AAAATTCAGCTAAAAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
7812 CAGACACTTTAATGGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
7877 GTTCTCAAGGTTTGATCAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACA
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * **
7942 TCATGTGCGCACA--------CCTCCCAATC-ACTGGAACCGCAATGCCACCGGTCAGGTTCTCC
583 TCATGTGCGCACACCCCCCCGCCCCCCAATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCC
** * * * ** *
7998 AACGATGCTCCGGCAATGGTGCCCTGGGTGAAAAAAAATGCGATACCAGCACATGCTCGAGCCCA
647 GGCGATGCTCC-GCGATGGTGCCCCGGGAGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * *
8063 GCAAGTGCATCCACAACCCTTGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTGG
711 GCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAG
* * *
8128 ACTGGGAATGAGCTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC
776 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * ** * *
8193 AGAGAGGTAGGATGCGCAAGCCGGGGATCGACCGGGTCCTCTCCTGTGTGCTGCC
841 AGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCC-CCCCTGCGTGCTGCC
* * * * * * *
8248 AATCCTACTGCCGT-AACCCTCAGTCTGGT-TAGATCTTAGACTAGGAATGAACTCCGTATACCT
1 GATCCTGCTACC-TCAACCCTCAGTCCGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * * * * *
8311 AAACCAACTGATGAAACAAGCAGGCGGGTGGGCACTGCGTCGACTAGAGAGACGGGATGCGCAAG
64 AAGCCAACCGACGAAACGAGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
** * *
8376 CTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTTTGCCATGCCAATGCCA
128 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
8441 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
193 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * *
8506 GACTTGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG-GTATTTTTTAAAAATTTT
258 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAG-ATTTTTTTAAAATTTT
* **
8570 TTCAGAAGGATTTTTGGCCAAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
322 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
8635 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGGCCATTTGAAGAAATTGTCCCCATT
387 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
8700 CCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGAG
452 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
8765 AGTTCTCGAGGTTTGATG-GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
517 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
8829 ATCATGTGCGCACACCCCCCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
582 ATCATGTGCGCACACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * ** * * *
8894 GACGATGCTTCGATAATGGTGCCCC-GGACGAAAACAAATACGGCACCAGCACATGCCTGAGCCC
647 GGCGATGCTCCG-CGATGGTGCCCCGGGA-GAAAAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * * **
8958 AGTATGTGCACTCGTAACCTTTGGTCCGGTCCGATCTTACACTGGGAATGAACTCTATATGCTTA
710 AGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
* * * * * * * *
9023 GACTGGGAGTGAACTCCGTACGCTTAAGTCAACCGATGAAACAAGCATGCGGGCGCTCAGCCGAC
775 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * ** *
9088 CAGAGGGGCAGGATGCACAAGCCGGGGATC-GACTGGGTCCCCCCTATGTGCTACC
840 CAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTC-GGGTCCCCCCTGCGTGCTGCC
* * * * * *
9143 AACCCTGCTGCCGCAACCCTTCA-TCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTA
1 GATCCTGCTACCTCAACCC-TCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
9207 AGCCAACCGAGGAAATGAGCGGACGGGCAGGCACTAAGCCGGCCATAGAGGCGGGATGCGCAAGC
65 AGCCAACCGACGAAACGAGCGG-CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
* * * *
9272 CGTGGATTGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTACCCTGCCAATGCCAT
129 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
*
9337 TTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
194 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * ** *
9402 ACTCG-TTTCCATTTTTCATGATTTTCAAAACTTTTTACGGTCCGAGATTTTTTTAAAATTTTTT
259 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTT
* * * *
9466 CAAAAGTG-GTTTTGGCCCCAAACTTGGTAGATGTGATGCTTGTATTTTTGTTGGCATGCACACA
324 CAGAAG-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
9530 AAAATTCAGCTAAAATCTCGTAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
9595 CAGACA-TTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
9659 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACA
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
9724 TCATGTGCACACA-CCCCCCGCCCCCCAATGGTCGAAACCCCAATGCCG-CTGGTTAGGTTCT-C
583 TCATGTGCGCACACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCC
* * * * * *
9786 --CG--G-T----GATGATGCCCCGAGCGAAAAATAATACGGCACCAGCACATGCCCGAGCCTAG
647 GGCGATGCTCCGCGATGGTGCCCCGGGAGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* *
9842 CATGTTCACCCGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
712 CATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
* *
9907 CTGGAAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCA
777 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * *
9972 GAGGGGAAGGATGCACAAACAGGGGATCGGTCAGGTCCCCCCTGCGTGCTACC
842 GAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCCTGCGTGCTGCC
* * * ** * *
10025 GATCCTGCTGCCACAACCCTCAATTTGATTTGATCTTAGACTGGGAATGAACTCCGTATACCTAA
1 GATCCTGCTACCTCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
10090 GCCAACCGACGAAACGAGCAGGCGGGCGGGCACTATGCCGGCCATAGAGGCGGGATGCGCAAGCC
66 GCCAACCGACGAAACGAGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* * * * **
10155 GTTGATTGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACTGTGCCAATGCCATT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
10220 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * * *
10285 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTAATGGTTTGGGATTTTTTTAAAACTTTTTT
260 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAA-TTTTTT
*
10350 -AGAAAGAGTTTTGGCCCCAAACTTGGTAGA-GATGATCCTTGTATTTTTGTTGGCATGCA-AAA
324 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG-TGATCCTTGTATTTTTGTTGGCATGCACAAA
10412 AAAAGTTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
388 AAAA-TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
10477 TCAGACACTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTG
452 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
10542 AGTTCTCAAGGTTTGATG-GGGATAGGGGGCCAATAT--------AGTAACAGTACCCATCGCAC
517 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * ** ** * *
10598 ATCATGTGCGCACA-CCCCCTGCCCCCCAATC-CCTAGAACTTCAATGCTATCGGCCAGATTCTC
582 ATCATGTGCGCACACCCCCCCGCCCCCCAATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTC
** * * * * * *
10661 CGATGATGCTTCGGCGATGGTGCCCCAGGCGAATAAAAAT-CTGGCACTAGCACATGCCTGAGCC
646 CGGCGATGC-TCCGCGATGGTGCCCCGGGAGAAAAAAAATGC-GGCACCAGCACATGCCCGAGCC
* * * * * ** * *
10725 CAGCATGTGCACCCGTAACCCTTGGTCTGATCCAATCTTGCACTGATAATGAACTCAGTCTGCTT
709 CAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTT
* * * *** *
10790 AGACTGGGAGTGAAC-CCAGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGTAACGCAGCCG
774 AGACTGGGAATGAACTCC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * *
10854 ACCAGAGGGGCAAGATGCACAAGCTGGGGATCGGTCAGGCCCCCCCTGCGTGCTGCT
838 GCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCCTGCGTGCTGCC
* * * * * *
10911 GATCCTGTTGCCACAACCCT-TGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
1 GATCCTGCTACCTCAACCCTCAG-TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
10975 AGCCAACCGACGAAACGAGAGGGTGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
65 AGCCAACCGACGAAACGAG-CGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
* * * *
11040 CGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATTCCAATTCCAT
129 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
* *
11105 TTTTATGGCTTGTAAATTCATACAATAGTCCCTCAAGCCTTCATGTGAAGTTTCATGGCAAGACG
194 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* *
11170 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTTAATATTTTTT
259 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTT
* *
11235 CAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
324 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
11300 AAATTTAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
11365 AAACACTTTAACGGCTACTGGCAGCAAACCTGTAAAACCTCAAATGCTCTTTAAGGAGGTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
11430 TTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * ** *
11495 C-TGT--G---A-CCGCAC-CCCCCCAATCGCCGAAACCCCAATGCCACCGGTCAGGTTCTTCGG
584 CATGTGCGCACACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * * * *
11552 CAATGCTCCGACGATGGTGCCTCGGGTA-AAAAAAAATGCAGCACCAGCAAATGCCTGAGCCCAG
649 CGATGCTCCG-CGATGGTGCCCCGGG-AGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
11616 CATGTGCACCCGCAACCCTCGATCTGGTCTGATCTTACTCTGGGAATGAACTCCGTATGCTTAGA
712 CATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
*
11681 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCA
777 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
** * * *
11746 GAGGGGCAAAATGCGCAAGCTGAGGATCGGTCGGGTCCCCCCTGCATG-TTCC
842 GAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCCTGCGTGCTGCC
* * * *
11798 TAATCCTACTGCCACAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
1 -GATCCTGCTACCTCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * **
11863 AGCCAACCGACGAAATGTGCGTGCGGGCGGCCACTACACCGGCCAGTGAGGCAAGATGCGCAAGC
65 AGCCAACCGACGAAACGAGCG-GCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
* * *
11928 CGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCTATGCCAATGCCAT
129 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
11993 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT-------CG
194 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * *
12051 -CTCGTTTTCTATTTTTCATGATTTTTTAAAGTTTTTACGGTTCGAGATTCTTTTAAAATTTTTT
259 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTT
** *
12115 CAGAAGGAGTTTTGTTCCCGAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
324 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
12180 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCTTTTGAAAAAAATGTCCCCATTTC
389 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * * *
12245 AAACACTTTAATGGCTACTGGTAGCAAACCTGCAAAATCTCAAATGCACTTTAAGGGGTTGTGAG
454 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * **
12310 TTCTCGAGGTTTGATG-GGGATAGGGGGCCAATATAAGGGCCAAGTAACAACACCCATCATACAT
519 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * * ** *
12374 CATGTGTGCACACCCCCCTGCCCCCTAATCGCCAGAACCCCAATGCTGTCGGCCAAATTCTCCGA
584 CATGTGCGCACACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * * *
12439 CGATGCTCCGACGATGGTGCCCCACGTA-AAAAAAAAT-CTGGCACTAGCACATGCTCGAGCCCA
649 CGATGCTCCG-CGATGGTGCCCC-GGGAGAAAAAAAATGC-GGCACCAGCACATGCCCGAGCCCA
* * * * * * * * *
12502 GTATGTGCCCCCGTAACCCTTGGTCTGATCTGATCTTGCACTGAGAATGAACTCAGTATGCTTAG
711 GCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAG
* * * **
12567 ACTAGGAATGAAC-CCAGTATGCCTAAGTCAACCCACGAAATGAGCATGCAGTAACG-T-AGCCG
776 ACTGGGAATGAACTCC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGC-G-GGCGCTCAGCCG
* * * * *
12629 ACCAGAGGGGTAGGATGCGCAAGCTGGGGATCGGTCAGGTCCCCCCCTCCGTGCTGGC
838 GCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGT-CCCCCCTGCGTGCTGCC
* * * * * *
12687 AATCCTGCTACCGCAACCCT-TGAT-CTAGTCTCATCTTAGACTGGGAAAGAACTCCGTATGCCT
1 GATCCTGCTACCTCAACCCTCAG-TCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
12750 AAGCCAATCAACGAAACGAACGGGTGGGCGAGCACTATGCCATGCC----A------ATGC-C-A
64 AAGCCAACCGACGAAACGAGC-GGCGGGCGGGCACTACGCC-GGCCAGAGAGGCGGGATGCGCAA
*** * *
12803 -TTTTTG-T-GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCC
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
* *** * * *
12865 ATTTTTGTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTG-CCATGCCAATGCAA
192 A-TTTT-T-AT---G-GCT---T--G--TA---A-A--TTCATACAATGGTCCCT--TAA-GC--
* * * * **
12929 TTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT-GTGAAGTTTCATGGCAAGA
232 -CTTCAT-G--TG-AAGTT--T-C-ATGG---C--AAGACGAC-TCGT----TTTC-T-------
* * * * *
12993 CGACTCGTTTT--CTATTTTTCACGATTTTTAAAATTTTTTACGGTTCGAGATTTTTGTAAAATT
270 --A-T--TTTTCACGATTTTTGA-AACTTTT----T-----ACGGTTCGAGATTTTTTTAAAATT
*
13056 TTTTCAGAAGGAGTTTTGG-TCCAACACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
320 TTTTCAGAAGGAGTTTTGGCCCCAA-ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
13120 TAAAAAAATTCAGCAAAAAACTCGAAGTGTACAGGATTTTGTGACCATGTGAAAAAAGTGTCCCC
384 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * *
13185 ATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAATTCTCAAATGCTCTTTAAAGAGGT
449 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
13250 GTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCG
514 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
13315 CACATCATGTGCGCACA-CCGCCCGCCCCCTCAATCGTCGGAACCCCAATGCC-ACTTGTAAGGT
579 CACATCATGTGCGCACACCCCCCCGCCCCC-CAATCGTCGGAACCCCAATGCCGTC-GGTCAGGT
* * * * * * * *
13378 TTTCCGGTGATGCTCCAGTGATGGTGTCCTGAGCA-AAAAAAAATGTGGCACCAGCACATGCCCA
642 TCTCCGGCGATGCTCC-GCGATGGTGCCCCG-GGAGAAAAAAAATGCGGCACCAGCACATGCCCG
** *
13442 AGCCCAGCATGTGCACCCGCAACCCTCTTTCCGGTCCGATCTTACACTGGGAATGAACTCCGTAT
705 AGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTAT
* * * * *
13507 GGC-TAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCTACGAAACGAGCGTGCAGACGCTCA
770 -GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
13571 GTCGGCCAGAGGGGCAGGATGCACAAG-TCGAGGATCGATCGAGT-CCCCC--C---CTG-C
834 GCCGGCCAGAGGGGCAGGATGCGCAAGCT-GGGGATCGGTCGGGTCCCCCCTGCGTGCTGCC
* * *
13625 G----TGCTACCGT-AACCCTTAGTCCGGTGC-GATCTTAGACTGGGAATGAACTCTGTATGCCT
1 GATCCTGCTACC-TCAACCCTCAGTCCGAT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
13684 AAGCCAACCGATGAAACGAGCGGGCGTGTGGGTACTACGCCGGCCAGAGAGGTGGGATGCGTAAA
64 AAGCCAACCGACGAAACGAGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
13749 CCGTGGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATATT-TGCCATGCCAATGCC
128 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT-TTCTGCCATGCCAATGCC
13812 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
192 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * *
13877 CGACTTGTTTTCTATTTTTCACGATTTTTGGAACTTTTTACGGTTCGGGATTTTTTTAAAATTTT
257 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTT
* * * *
13942 TTTAGAAGTAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTGTTGGTATGCATA
322 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACA
* * *
14007 AAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCAT
386 AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * * *
14072 TCCAGATACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCTAAT-CTTCTTTAAAGGGGTG
451 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC-TCTTTAAGGGGGTG
* *
14136 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAACAGCACCCATCGC
515 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
** * *
14201 ACA--A------C-C-CCCCTAC-CCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTC-
580 ACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
** * * * *
14254 CCTGATGATGCTCCGACGATGGTACCCCGGGTGAAAAAAAATGTGACACCAGCACATGCCCGAGC
645 CC-GGCGATGCTCCG-CGATGGTGCCCCGGGAGAAAAAAAATGCGGCACCAGCACATGCCCGAGC
* *
14319 CTAGCATGTACACCCGCAACCCTCGGTCT-G---G----T-C-C----AAT---CT---TA--C-
708 CCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCT
*
14361 ---ACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCAGCCG
773 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* ** * * * * * *
14423 GCCAGAGGGGCAGGAAGCATAAGCTGAGGATCGGCCAGGTCCCCCCCTGCTTGTTGCT
838 GCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGT-CCCCCCTGCGTGCTGCC
* * * ** * ** *
14481 GATCCTACTATCGCAACCCTTGGTCCAATCCAATCTTAGACTGAGAATGAACTCCGTATGCCTAA
1 GATCCTGCTACCTCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
14546 GCCAATCGACAAAACGAGCCAGCAGGCGGGCACTACGCCGGCTAGAGAGGCAGGATGCGCAAGCC
66 GCCAACCGACGAAACGAG-CGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* * * *
14611 ATTGTTCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
*
14676 TTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * *
14741 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTATC-GTTTGGGATTTTTTTAAAATTTTTT
260 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-CGGTTCGAGATTTTTTTAAAATTTTTT
* * ** * * **
14805 CAGAAGGAGTTTTGGGCCCAAACTTGATAGACAAGATCCTTGTTTTTTTTTTCACATGCACAAAA
324 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAA
* * *
14870 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
14935 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
** *
15000 GTTCTCGAGCCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
15065 TCATGTGCGCACACCCCCCCGCTCCCCCAATCGCCGGAGCCCCGATGCCG-CAGGTCAGCTTCT-
583 TCATGTGCGCACACCCCCCCGC-CCCCCAATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTC
* * * * *
15128 ---C--TG----GCGATGGTGCCTCGGGCA-AAAAAAAATGCTGCACCAGCACATGGCTGAGCCT
646 CGGCGATGCTCCGCGATGGTGCCCCGGG-AGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCC
*
15183 AGCATGTGCACCCGTAA--C-C---CT--T-CG---TT---C-------G-A-TCCG-AT-CTTA
710 AGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
* * * * *
15222 CACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGCGTACGGGCGCTCAGTCGGC
775 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * *
15287 CAGAGGGGTAGGACGCGCAAGCCGGGGATCGGTCGGGTCCCTCCCTGCGTGCTGCT
840 CAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCC-CCCTGCGTGCTGCC
* * * *
15343 GATCCTGCTACCAT-AACCCTCAGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTACGCCTA
1 GATCCTGCTACC-TCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * ** * * * * *
15407 AGCCAACCGATGAAATGAGCGAACGGGTGGGCACTACATCGGCCAAAGAGACGGGATGTGTAAGT
65 AGCCAACCGACGAAACGAGCG-GCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
* *
15472 CGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCAT
129 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
*
15537 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAGGACG
194 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * * * * *
15602 ACTCATTTTTTATTTTTCACAAATTTTGAAACATTTTACGATTCGGGATTTTTTTAAAACTTTTT
259 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAA-TTTTT
* * * * *
15667 TCAGAAGGAGTTTTGGCCCCAAACTTGGCAAACGTGATCCTTGCATTTTTGTTGGCTTGGACAAA
323 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
15732 AAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTTGTCACTATTTGAAAGAAGTGTCCCCATTT
388 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
15797 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGA
453 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
15862 GTTCTCGAGGTTTGATGACGGATAGGGGGCCACTATAATGGCCAAGTACCAGCACCCATCGCACA
518 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
15927 TCATGTGCGCACA----GCC-CCCCCCAATCG-CTAGAACCCGAATGTCGTCGGTCAGGTTCT-C
583 TCATGTGCGCACACCCCCCCGCCCCCCAATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCC
* *
15985 --CGA-------CGATGGTGCCCCGGGAGAAAAAAAATACGGCACCAGCACATGCCCGATCCCAG
647 GGCGATGCTCCGCGATGGTGCCCCGGGAGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * **
16041 CATGTCCACCCACAACCCTCGGTCCGATCCAATCTTACACTGGGAATGAACTCTTTATGCTTAGA
712 CATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
* * *
16106 CTGGGAATGAAGTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCAGCCGGCTA
777 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* ** ** * * * *
16171 GAGGGGTAGGATG-TAAAATTCGGGGATC-GACTGGGTCCCCTCTACGTGCTGCA
842 GAGGGGCAGGATGCGCAAGCT-GGGGATCGGTC-GGGTCCCCCCTGCGTGCTGCC
** * ** *
16224 GATCCTGCTACCAT-AACCCTTGGTCCTATCCAATCTTAGACTGGGAATGAACTCCGTATGCGTA
1 GATCCTGCTACC-TCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
16288 AGCCAA-C--C--AACGA-------------A--A----TG--AGTG-GGCGGTATGCGTAAGCT
65 AGCCAACCGACGAAACGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* *
16326 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCTTGCCAATGCCATT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA-T
* *
16391 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTTATGGCAAGATG
194 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * * *
16456 ACTCGTTTTCTATTTTTCATGATTTTTGAAACGTTTTACAGTTTGGGATTTTTTTAAAATTTTTT
259 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTT
* * * *
16521 CA-AAGGGAGTTTTTGCCCCAAACTTGCTAGATGTGATCGTTGTATTTTTGTTGGTCATG-ACAA
324 CAGAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG-CATGCACAA
* * * *
16584 AAAAATTCAACTAAAAACTCGAAGTGTACAGGATTTTTGTG-GCATTTGGAAAAAGTGTCCCCTT
387 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGA-TTTTGTGACCATTTGAAAAAAGTGTCCCC-A
* * *
16648 TTTCAGGCACTTTAATGGCTACTGGGAGCAAACCTGTAAAATCTC-AATGCTCTTT-ACGGGGTG
450 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * *
16711 TGAGTTCTTGAGGCTTGATGAGGGATAGGGGACCAATATAAGGGCCAAATACCAGCACGCATCGC
515 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * **
16776 ACATAATGTGCGCACACCCCCCCGCCCCCTAATCATCGGAACCCCAATGCCACCGGTCAGGTTCT
580 ACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
** * * * * *
16841 TTGGCGATGCTCCAGCGATGGTGCCTCGGGCGAAAAAATATGCGGCACTAGCACATGCTCGAGCC
645 CCGGCGATGCTCC-GCGATGGTGCCCCGGGAGAAAAAAAATGCGGCACCAGCACATGCCCGAGCC
* ** * * *
16906 TAGCATGTGCACCCATAACCCTCGGTCTGGTCTGATCTTACACTGGCAATGAACTCCATATGCTT
709 CAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTT
* * * *
16971 AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTTAGCCAG
774 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* **
17036 CCAGAGGGGCAGGATGCGCAATCCAGGGATCGG-CTGGGTCCCCTCCTG
839 CCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTC-GGGTCCCC-CCTG
17084 TGTCACTCCT
Statistics
Matches: 9083, Mismatches: 1192, Indels: 719
0.83 0.11 0.07
Matches are distributed among these distances:
848 89 0.01
849 1 0.00
850 5 0.00
851 1 0.00
852 82 0.01
853 185 0.02
854 167 0.02
855 5 0.00
856 92 0.01
857 40 0.00
858 6 0.00
859 3 0.00
860 128 0.01
861 396 0.04
862 625 0.07
863 56 0.01
864 2 0.00
865 2 0.00
866 1 0.00
867 2 0.00
868 189 0.02
869 6 0.00
870 2 0.00
871 6 0.00
872 2 0.00
873 37 0.00
874 155 0.02
875 73 0.01
876 13 0.00
877 4 0.00
878 3 0.00
879 49 0.01
880 261 0.03
881 84 0.01
882 532 0.06
883 186 0.02
884 145 0.02
885 557 0.06
886 856 0.09
887 256 0.03
888 604 0.07
889 209 0.02
890 2 0.00
891 1 0.00
892 8 0.00
893 123 0.01
894 397 0.04
895 364 0.04
896 231 0.03
897 9 0.00
898 787 0.09
899 294 0.03
900 2 0.00
902 2 0.00
903 4 0.00
904 1 0.00
905 5 0.00
906 1 0.00
907 2 0.00
908 1 0.00
909 7 0.00
911 1 0.00
914 4 0.00
915 1 0.00
916 1 0.00
918 4 0.00
919 3 0.00
920 3 0.00
921 2 0.00
922 4 0.00
924 4 0.00
925 3 0.00
926 2 0.00
927 8 0.00
928 3 0.00
929 1 0.00
930 1 0.00
933 5 0.00
934 76 0.01
935 12 0.00
936 5 0.00
937 6 0.00
938 1 0.00
939 3 0.00
940 3 0.00
941 1 0.00
942 1 0.00
943 4 0.00
944 13 0.00
945 230 0.03
946 261 0.03
947 53 0.01
948 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (894 bp):
GATCCTGCTACCTCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCGACGAAACGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
ATGCTCCGCGATGGTGCCCCGGGAGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
TGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
GGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCCTGCGTGCTGCC
Found at i:9047 original size:26 final size:26
Alignment explanation
Indices: 8993--9048 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 26
8983 CCGGTCCGAT
* *
8993 CTTACACTGGGAATGAACTCTATATG
1 CTTACACTGGGAATGAACTCCATACG
* * *
9019 CTTAGACTGGGAGTGAACTCCGTACG
1 CTTACACTGGGAATGAACTCCATACG
9045 CTTA
1 CTTA
9049 AGTCAACCGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATACG
Found at i:9915 original size:26 final size:26
Alignment explanation
Indices: 9875--9927 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
9865 CTGGTCTGAT
*
9875 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGAAATGAACTCCGTATG
*
9901 CTTAGACTGGAAATGAACTCCGTATG
1 CTTACACTGGAAATGAACTCCGTATG
9927 C
1 C
9928 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGAAATGAACTCCGTATG
Found at i:12886 original size:63 final size:63
Alignment explanation
Indices: 12787--12932 Score: 283
Period size: 63 Copynumber: 2.3 Consensus size: 63
12777 GCGAGCACTA
12787 TGCCATGCCAATGCCATTTTTGTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTT
1 TGCCATGCCAATGCCATTTTTGTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTT
12850 TGCCATGCCAATGCCATTTTTGTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTT
1 TGCCATGCCAATGCCATTTTTGTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTT
*
12913 TGCCATGCCAATGCAATTTT
1 TGCCATGCCAATGCCATTTT
12933 AATGGCTTGT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 82 1.00
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.38
Consensus pattern (63 bp):
TGCCATGCCAATGCCATTTTTGTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTT
Found at i:16125 original size:26 final size:26
Alignment explanation
Indices: 16074--16126 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
16064 CCGATCCAAT
**
16074 CTTACACTGGGAATGAACTCTTTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
16100 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
16126 C
1 C
16127 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:24602 original size:26 final size:26
Alignment explanation
Indices: 24566--24618 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
24556 CCGGTCCGAT
*
24566 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
24592 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
24618 C
1 C
24619 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:25489 original size:26 final size:26
Alignment explanation
Indices: 25460--25512 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25450 CCGATCCGAT
*
25460 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
25486 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
25512 C
1 C
25513 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:26386 original size:26 final size:26
Alignment explanation
Indices: 26357--26409 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26347 CCAGTCCGAT
*
26357 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
26383 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
26409 C
1 C
26410 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:27593 original size:897 final size:895
Alignment explanation
Indices: 23453--29263 Score: 7536
Period size: 897 Copynumber: 6.5 Consensus size: 895
23443 AATGGCTGCT
* *
23453 GGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGCAC
1 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * ** ** * * * *
23518 CCATCAG-ACATCATGTGCGTACACCCCCCCGCCCCTCAAATCACCATAACTCTAATGCCGCCGA
66 CCATC-GCACATCATGTGCGCACA-CCCCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGG
* * *
23582 TTAGGTTCTCC--C-A-------A-GATGGTGCCCCGAGCGAAAAAAAAA-GTGGCACCAGCACA
129 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACA
* * *
23635 TG-CTCGAGCCCAGCATGTGCACCT-GCAACCCTCAGTCCGATCCGATCTTACACTAGGAATGAA
194 TGCCT-GAGCCCAGCATGTGCA-CTAGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAA
* * * * ** *
23698 CTCCATTTGCTTAGACTAGTAATGAACTCCGTATG---AAGTCAACCCACAAAATTAGCGTACGG
257 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGG
* * * ** * *
23760 GCACTCAGTCGGCCAGAGGGGCAGGATGCGTAAGTTGGGGATCGATCGGGTCCCCCCTGCATGCT
322 GCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCT
* * *
23825 GTCGATCCTGCTGCCACAACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCC
387 GTCGATCCTGCTGCCATAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* *
23890 TAAGCCAACCGCCGAAACGAGC-GGCGGGCGGGCACTACGTGGCCAGAGAGGCGGGATGCGCAAG
452 TAAGCCAACCGACGAAACGAGCGGGCGGGAGGGCACTACGTGGCCAGAGAGGCGGGATGCGCAAG
* *
23954 CCGTGGATCGATAGGGTGGTAGGT-GGTTTAGGCACATCTGCATATTTTTGCTATGCCAATGCCA
517 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-ATGCCAATGCCA
24018 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
581 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * *
24083 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAACTTTTT
646 GACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTT
* * * ** *
24148 TCAGAAGGAGTTTTGGCTCCAAACTTTGTAGATGCAAGCCTTGTATTTTTTTTGGCATGCACAAA
711 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* * *
24213 AAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTC
776 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
24278 CATACACTTTAGTGGCTACAGGCAGCAAGCCTGTAAAATCTCAAATGCTCTTTAA
841 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
24333 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCAC
1 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * *
24398 CCATTGCACATCATGTGCGTACA----CCGCCCCCTCAATCATCGGAACCCTAAAGCCGTCGGTC
66 CCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTC
* *
24459 AGGTTCTCCGGCGATGCTCCGACGATGGTGCCCTGGGCG--AAAAAAATGCGGCACCAGCACATG
131 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATG
* * *
24522 CCTGAGCCCAGCATGTGCACCCA-CAACCATCGGTCCGGTCCGATCTTACACTGGGAATGAACTT
196 CCTGAGCCCAGCATGTGCA-CTAGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTC
* *
24586 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCG
260 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCG
* * * * * * * * *
24651 CTCAGCCGGCCAAAGGGGTAAGATGCACAAGCCAGGGATCGGTTGGGTCCCACCTGTGTGCT-TT
325 CTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTGTC
* * * *
24715 GATCCTACTACCATAACCCTCGGTCTGGTCCAATCTTAGAATGGGAATGAACTCCGTTTGCCTAA
390 GATCCTGCTGCCATAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
24780 GCCAACCAACGAAACGAGCGGGCGGGCA-GGCACTACATCGGCCAGAGAGGCGGCATGCGCAAGC
455 GCCAACCGACGAAACGAGCGGGCGGG-AGGGCACTACGT-GGCCAGAGAGGCGGGATGCGCAAGC
* *
24844 CGTGGATCAATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGTCATGCCAATGCCAT
518 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CATGCCAATGCCAT
* * *
24909 TTTTATGGCTTGTAAATTGATACAATGGCCCCTTAAGCCTTCATGTGAAGTTGCATGGCAAGACG
582 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
*
24974 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTT
647 ACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTT
* * *
25039 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATACTTATATTTTTTTTGGCATGCACCAAA
712 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
*
25104 AAATTCAGCT--AAACTCGAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTATCCCCATTT
777 AAATTCAGCTAAAAACTCG-AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* ** * *
25167 CAGACACCTTAATGGCTACTGGTTGCAAACCTGCAAGATCTCAAATGCTCTTTAA
841 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
25222 GGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCTC
1 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
** * * * * **
25287 CCATCGCACATCATGTTTGCACACCCCCCACCCCTCCAATTG-CAGAAACCCCAATGCCACCGGT
66 CCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTC-GGAACCCCAATGCCGTCGGT
* ** * * * * * *
25351 CAGGTTCTCCGATGATGCTCCGGTGATGGAGCCCCGAGTG-AAAAAAAATACAGCCCCAGCACAT
130 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACAT
* * * * ** *
25415 GCTTGAGCCTAGAACGTGCACCCGCAACCCTCGGTCCGATCCGATCTTACACTGGGAATGAACTC
195 GCCTGAGCCCAGCATGTGCACTAGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTC
* * *
25480 CGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCA
260 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCG
* * ** * * * *
25545 CTCAGTCGGCCAGAGGGGTAGGACACACAAGCCGGGGATCGATCGGG-CCCCCCTGTGTGCTGCC
325 CTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTGTC
* * * * ** * *
25609 GATCCTGCTG-TAGTAACCTTCAGTCTGATCTGATCTTAGATTGGGAATGAACTCTGTATGCCTA
390 GATCCTGCTGCCA-TAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
25673 AGCCAACCGACGAAACGAGCGGGCCGGTGGGCACTATGTCGGCCAGAGAGGTGGGATGTGAAAGC
454 AGCCAACCGACGAAACGAGCGGGCGGGAGGGCACTACGT-GGCCAGAGAGGCGGGATGCGCAAGC
*
25738 CGTGGATCAATAGGG-GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTATGCCAATGCCAT
518 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-ATGCCAATGCCAT
** *
25802 TTTCGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACG
582 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* *
25867 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTT
647 ACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTT
* * * *
25932 TAGAAGAAGTTTTGGCCCCAAACTTGGTAGACGCGATCCTTGTATTTTTTTTGGCATGCGCAAAA
712 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* *
25997 AAGTTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTCGAAAAAAGTG-CCCTCATTT
777 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC-CATTT
* *
26061 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGTTCTTTAA
841 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
26116 GGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCAC
1 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * *
26181 CCATCACACATCATGTGCGCACACCCCCCCCGGCCCCCCAATCGTCGGAACCCCAATGTCGTCGG
66 CCATCGCACATCATGTGCGCACA--CCCCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGG
* * * *
26246 TCAGGTTCTCCGATGATGCTCC-AGTGATGTTGCCCCGGGCGAAAAAAAAATGTGGCACCAGCAC
129 TCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCAC
* * * * *
26310 ATGCCCGAGCCCAGCAAGAGCACTCA-CAACCCTCGGTCCAGTCCGATCTTATACTGGGAATGAA
193 ATGCCTGAGCCCAGCATGTGCACT-AGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAA
*
26374 CTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGG
257 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGG
* * ** * *
26439 GCGGTCAGCCGGCCAGAGGGGCAGGATGCACAAGTTGAGGATCGGTCGGGTCCCCCCCTACGTGC
322 GCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCCCTGCGTGC
** * *** * ** *
26504 TACCAATCCTGCTGCTGCAACCCTTGGTCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATGC
386 TGTCGATCCTGCTGCCATAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * **
26569 CTAAGCCAACTGATGAAACGAGCGGACGGGCGGGCACTATGTTGGTTAGAGAGGCGGGATGCGCA
451 CTAAGCCAACCGACGAAACGAGCGGGCGGGAGGGCACTACG-TGGCCAGAGAGGCGGGATGCGCA
* * * *
26634 AGCCTTCGATCGATAAGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCATTGCCAATGC
515 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGC
* *
26699 CATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTTATGGCAAG
579 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
* * * **
26764 ACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTCAAGATTTTTTTAAAATTT
644 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTT
* * * *
26829 TTTCAGTAGGAGTTTTGACCCCACACTTGGTAGACGTGATCCTTGTATTTTGTTTGGCATGCACA
709 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
* * * *
26894 AAAAAATTCAGCTAAAAACGCTAAGTGTACAGGATTTTGTGACCAATTGAAAAAATTGTCCCCAT
774 AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
26959 TTCAGACACTTTAATGGCTACTGGCGGCAAACCTTTAATATCTCAAATGCTCTTTAA
839 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
** * *
27016 GGGGGTGTGAGTT-TTTAGGTTTGATGGGGGATAGGGGGCCAATAAAAGGGCCAAGTACCAGCAC
1 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
27080 CCATCGCACATCATGTGTGCACACCCCCCGCCCCCCCAATCGTTGGAACCCCAATGTCG-CTGAT
66 CCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGTC-GGT
* * * * *
27144 CAGGTTTTCTGACGATGCTCCGACGATGGTGCCCCGGGTGAAAAAAAAATACGGCACCAACACAT
130 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACAT
* * * * *
27209 GCCTGAGCCCAGCTTGTGCACTAGCGACCCTCGGACCGGTCCGATCTTACACTGGAAATGAACTT
195 GCCTGAGCCCAGCATGTGCACTAGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTC
* * *
27274 CGTATGCTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAAA-GAGCGTGCAGGC
260 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-AAAACGAGCGTGCGGGC
* * * * * * *
27338 ACTCAACCGACCAGAGGGGCAGTATGCGCAAGCCGGGGATTGGTCGGGTCCCCCCGTGCGTTCTA
324 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCC-TGCGTGCTG
* ** * *
27403 CCGATCCTGCTGCCATAACCCTCGGTCCAGTCCAATCTTAGACTGGGATTAAACTCCGTATGCCT
388 TCGATCCTGCTGCCATAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
27468 AAGCCAACCGACAAAACGAGCAGGCGGGAGGGCACTACGCTGGCCAGAGAGACAGGATGCGCAAG
453 AAGCCAACCGACGAAACGAGCGGGCGGGAGGGCACTACG-TGGCCAGAGAGGCGGGATGCGCAAG
*
27533 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGTCATGCCAATGCCA
517 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CATGCCAATGCCA
* * *
27598 TTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCATGTGAAGTTTTATAGCAAGAC
581 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * *
27663 GACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTCTAAAATTTTT
646 GACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTT
* ** * *
27728 TCAGAAGAAGTTTTGGCCCCTCACTTGGTAGACGTGATGCTTGTATTTTTGTTGGCATGCACAAA
711 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
*
27793 AAAAGTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
776 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
27858 CAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTCA
841 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * *
27913 --GGGAGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAACATAAGGGCCAAGCACCAGCAC
1 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * *
27976 TCATCGCACA-CTTGTGTGCACACCCCTCCCCCCGCCGCCAATCATCGGAACCCCAATGCCGCCG
66 CCATCGCACATCATGTGCGCACACCCC-CCGCCC-CC-CCAATCGTCGGAACCCCAATGCCGTCG
* * ** *
28040 GTCAGGTTCTCTGAGGATGCTCCGGTGATGGTGCCCCGGGCAAAAAAAAAATGCGGCACCAGCAC
128 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCAC
* * ** * * * ***
28105 ATGCCCGAGCCCAGCATATGCACCCGCAACCCTCGATCCGATCTGATCTTACACCAAGAATGAAC
193 ATGCCTGAGCCCAGCATGTGCACTAGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAAC
* * *
28170 TTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
258 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGG
* * * * * * *
28235 TGCTCAACTGGCCAGAGGGGCAAGATGCGCAAGTCGGGGATTGGTCGGGTCCCCCCTTCGTGCTG
323 CGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTG
* ** * * *
28300 TCGATCCTACTATCATCATCGTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
388 TCGATCCTGCTGCCATAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * **
28365 AAGCCAACCGATGAAACGAG-GGGCGGCCA-GGCACTATAC-TGGCCAGAGAGACGGGATGCATA
453 AAGCCAACCGACGAAACGAGCGGGCGG-GAGGGCAC--TACGTGGCCAGAGAGGCGGGATGCGCA
* * * *
28427 AGTCGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAAAGC
515 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGC
** *
28492 CATTTTTATTTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAC
579 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
* * * *
28557 ACGCCTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTATGGTTTGGGATTTTTTTTAAATTT
644 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTT
* * *
28622 TTTCAAAAGGAGTTTTGG-CCCAACACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAT
709 TTTCAGAAGGAGTTTTGGCCCCAA-ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
* *
28686 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCA
773 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
28751 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
838 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
28809 AGGGGTGTGAGCTCTCGAGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
1 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * *
28874 CCATCTCACATCATGTGCGCACACACCCCCGCCCCCTCAATCGACAGAACCCCAATGCCGTCGGT
66 CCATCGCACATCATGTGCGCACAC-CCCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGT
* * * *
28939 CAGGTTCTCC-AGCGATGCTCTGACGATGGTGCCTCAGGC-AAAAAAAAATGCAGCACCAGCACA
130 CAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACA
* * * *
29002 TGCAC-GAGCCCAGCATGTGGACCT-GTAACCCTCCGTCCGGTCCAATCTTACACTGGGAATGAA
194 TGC-CTGAGCCCAGCATGTGCA-CTAGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAA
*
29065 CTCCGTATGCTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCA-AAAACGAGCGTGCGG
257 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGG
* * * ** *
29129 GCGCTCAACCGGCCAGAGGGGCAGGATGCGTAAGCCAGGGATCGGTCATGTCCCCCCCTGCGTCC
322 GCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCCCTGCGTGC
* * ** * * * *
29194 TGTCGATCCTACTACTGTAACCCTCGGTCTGGTACGATCTTACACTAGGAATGAACTCCGTATGC
386 TGTCGATCCTGCTGCCATAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
29259 CTAAG
451 CTAAG
29264 TCAGCCCACA
Statistics
Matches: 4304, Mismatches: 551, Indels: 136
0.86 0.11 0.03
Matches are distributed among these distances:
875 36 0.01
877 1 0.00
878 1 0.00
879 1 0.00
880 81 0.02
884 7 0.00
885 98 0.02
886 16 0.00
887 76 0.02
888 95 0.02
889 214 0.05
890 227 0.05
891 1 0.00
892 2 0.00
893 310 0.07
894 464 0.11
895 91 0.02
896 696 0.16
897 1009 0.23
898 311 0.07
899 216 0.05
900 348 0.08
901 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (895 bp):
GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
CCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTC
AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATG
CCTGAGCCCAGCATGTGCACTAGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGC
TCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTGTCG
ATCCTGCTGCCATAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAACGAGCGGGCGGGAGGGCACTACGTGGCCAGAGAGGCGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
Found at i:29077 original size:26 final size:26
Alignment explanation
Indices: 29048--29100 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
29038 CCGGTCCAAT
29048 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
29074 CTTAGACTGGGAATTAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
29100 C
1 C
29101 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:29374 original size:158 final size:158
Alignment explanation
Indices: 29074--29426 Score: 377
Period size: 158 Copynumber: 2.2 Consensus size: 158
29064 ACTCCGTATG
* * *
29074 CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCAAAAACGAGCGTGCGGGCGCTCAACC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAAAAACGAGCGTACGGGCGCTCAACC
* * * ** * ** *
29139 GGCCAGAGGGGCAGGATGCGTAAGCCAGGGATCGGTCATGTCCCCCCCTGCGTCCTGTCGATCCT
66 GACCAGAGGGCCAGAATGCACAAGCCAGGGATCGGTCAGGTCCCCCCCTGCGTCCTACCAATCCT
*** * * *
29204 ACTACTGTAACCCTCGGTCTGGTACGAT
131 ACTACCACAACCCTCGATCTGGCACAAT
* * * *
29232 CTTACACTAGGAATGAACTCCGTATGCCTAAGTCAGCCCACAAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA-AAAACGAGCGTACGGGCGCTCAAC
* ** *
29297 CGACCA-ATGGGCCAGAATGCACAAGCCGGGGATCGGTTGGGT-CCCCCCTGCGTGCTACCAATC
65 CGACCAGA-GGGCCAGAATGCACAAGCCAGGGATCGGTCAGGTCCCCCCCTGCGTCCTACCAATC
** * *
29360 CTGTTGCCACAACCCTCGATCTGGCCCAAT
129 CTACTACCACAACCCTCGATCTGGCACAAT
* * *
29390 CTTAGACTAGGAATGAACTTCGTATGTCTAAGCCAAC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
29427 TGACGGAACG
Statistics
Matches: 158, Mismatches: 35, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
158 106 0.67
159 52 0.33
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCAAAAACGAGCGTACGGGCGCTCAACC
GACCAGAGGGCCAGAATGCACAAGCCAGGGATCGGTCAGGTCCCCCCCTGCGTCCTACCAATCCT
ACTACCACAACCCTCGATCTGGCACAAT
Found at i:31332 original size:897 final size:891
Alignment explanation
Indices: 29232--34038 Score: 5728
Period size: 858 Copynumber: 5.4 Consensus size: 891
29222 CTGGTACGAT
* * * * *
29232 CTTACACTAGGAATGAACTCCGTATGCCTAAGTCAGCCCACAAAATGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * *
29297 CGACCA-ATGGGCCAGAATGCACAAGCCGGGGATCGGTTGGGTCCCCCCTGCGTGCTACCAATCC
66 CGGCCAGA-GGGGCAGGATGCGCAAGCCGGGGATCAG-TAGGTCCCCCCTACGTGCTACCAATCC
** * * * * ** * * *
29361 TGTTG-CCACAACCCTC-GATCTGGCCCAATCTTAGACTAGGAATGAACTTCGTATGTCTAAGCC
129 TACTGACTACAACCATCAGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * ** * *
29424 AACTGACGGAACGAGCGGGCGGGCGGGCTTTACGCCGGCCAGAGAGGCGGGATGCGTAAGCCGTG
193 AACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTG
* * *
29489 GATCGATAGGGTGGTAGGCGAGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTT
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
*
29554 ATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
323 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* *
29619 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTACAATTTTTTCAAA
388 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTA-AAATTTTTCAGA
* *
29684 AGGATTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAAT
* *
29749 TCAGCTAAAAACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAATAGTGTCCCCATTTCAGAC
516 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
29814 ACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCT
581 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
29879 CGAGGTTTGATGAGGGATAAGGGACCAATATAGGGGCCAAGTACCAGCACCCATCGCACATCATG
646 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * * * * **
29944 TGTGCAAACCCCTCCCTGCCCCCCCAATCGCCGAAACTCCAATACCGTCGATCAGGTTCTTCGGT
711 TGCGCACACCCCT--C-G-CCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
30009 GATGCTCCGACGATGGTGCCCCGAGC-AAAAAAAAAATG-AGGCACCAGCACATGCCTGA-CCTC
772 GATGCTCCGACGATGGTGCCCCGAGCAAAAAAAAAAATGCA-GCACCAGCACATGCCTGAGCC-C
* * * ** *
30071 AGCAGGTGCACCCACAACCTTCGGTTTGGTCCGATCTTACACTGGGGATGAACTTCGTATG
835 AGCATGTGCACCCGCAACCCTCGG-TCCGTCCGATCTTACACTGGGAATGAAC-TC-TA-G
* * *
30132 CTTTGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * *
30197 CGGCCAGAGGGGAAGGATG-GACAAGCCGGGGGTCGGTCAGGTCCCCCCTACGTGCTGCCAATCT
66 CGGCCAGAGGGGCAGGATGCG-CAAGCCGGGGATCAGT-AGGTCCCCCCTACGTGCTACCAATCC
*
30261 TACTG-CTACAA-CACTCCA-TTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
129 TACTGACTACAACCA-T-CAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* ** * * *
30323 CAACCGACAAAACGAGCGGGCGACCGGCCACTACGCCGGCTAGAGAGTCAGGATGCGCAAGCCGT
192 CAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGT
* * **
30388 GGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATTTT
257 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
* *
30453 TATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATAGCAAGACGACT
322 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * **
30518 CGTTTTCTATTTTCCATGATTTTTGAAACTTTTTACTATTCAAGATTTTTTTAAAATTTTTGCAG
387 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTT-CAG
* * *
30583 AAGGAGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAT
451 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAT
*
30648 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGAC
516 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
30713 AGTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
581 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * * *
30778 TGAGGTTTGATGAGGGACAGGAGGCCAATATAAGGGCCAAGTACCTGCACCCATCACACATAATG
646 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
*
30843 TGCGCACACCCCTCGTCCCCGCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
711 TGCGCACACCCCTCG-CCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* * *
30908 GCTCCGATGATGGTGCCCCGGGCAAAAAAAAAAATGCAGCACCAGCAAATGCCTGAGCCCAGCAT
775 GCTCCGACGATGGTGCCCCGAGCAAAAAAAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCAT
* * * *
30973 TTGCAACCGCAACCCTCAGTCCTGTTCGATCTTACACTGGGAATGAACTCCGTAGG
840 GTGCACCCGCAACCCTCGGTCC-GTCCGATCTTACACTGGGAATGAACT-C-TA-G
* ** *
31029 CTTAGACTGGGAATGAAAT-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * ***
31093 CAGCCAGAGGGGCAGGATGCGCAAGCAGGGGATCGGATGGGTCCCCCCGTACGTGCTATTGATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAG-TAGGTCCCCCC-TACGTGCTACCAATCC
* * *
31158 TACTGTC-ACAACCATCGGTTCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
129 TACTGACTACAACCATCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
31222 ACCGACAAAACGAGCGGGCGGGCAGGCACTACGCCAGCCAGAGAAGCAGGATGCGCAAGCCGTGG
194 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGG
* * * * * * *
31287 ATCGATAGGGTGGTTGGTGGGTTTAGGCATATCTTCTTTTTTTTGCTATGCGAATGCCATTTTTA
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
* *
31352 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAGGTTTCATGGCAAGACAACTCG
324 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* * ** *
31417 TTTTCTATTTTTCACGATTTTAGAAACTTTTTATGGTTCGGGATTTTTTTAAAACTTTTTTAGAA
389 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAAA-TTTTTCAGAA
* * *
31482 GGTGTTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCACAAAAAAATT
453 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAATT
* * *
31547 CAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAACAAAGTGTCCCCATTTCAGACA
517 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
31612 GTTTAATGGCTACAGGTATCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
582 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
31677 GAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACTCATCACACATCATGT
647 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * ** *
31742 GCACACACCCC-CGGCCCGCCCAATCGTCAGAACCCTAATGCCATCAGTCAGGTTCT-------T
712 GCGCACACCCCTC-GCCC-CCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* * * * * *
31799 --T--GGCGAAGGTGCCTCGGGC--GAAAAAAAATGC-GACACCAGCACATGTCTGAGCCCAGCA
775 GCTCCGACGATGGTGCCCCGAGCAAAAAAAAAAATGCAG-CACCAGCACATGCCTGAGCCCAGCA
*
31857 TGTGCACCCACAACCCTCGGTCCG---G----T---CT--G-AT---CT-TA-
839 TGTGCACCCGCAACCCTCGGTCCGTCCGATCTTACACTGGGAATGAACTCTAG
* * * * * *
31892 C----ATTGGGAATGAACTCCGAATGGCTAAGTCAACCCACGAAACGAGTGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * *
31953 TGGCCAGAGGGGCAAGATGCGCAAGCCGGGG-TCAGCTACGTTCCCCCTATGTGCTACCGATCCT
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAG-TAGGTCCCCCCTACGTGCTACCAATCCT
* * * * * * **
32017 GCT-ACTGCAACCCTCAGTCCGATCTGATTTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAA
130 ACTGACTACAACCATCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
32081 CCAACGAAACGAGCTGGCGAGCGAGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
195 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGA
* * *
32146 TTGATAGAGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
260 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
* *
32211 GGCTTCTAAATTCATTCAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC-CTG
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC-G
*
32275 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAAATTTTTCAGAA
389 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTT-AAAATTTTTCAGAA
* * * * *
32340 GGAGTTTTGGCCCCAAACATGGTAGACATGATCCCTGTATTTTTTTTGGCATCCAAAAAAAAATT
453 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-ACAAAAAATT
* * *
32405 AAGCTAAAAACTCGAAGTTTACAGGATGTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
517 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
32470 CTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAGGGGGGTGTGGGTTCTT
582 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * *
32535 GAGTTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCTCCCATTGCACATCATGT
647 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
32600 GCGCACA----AC-CCCCCCAATTGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGT
712 GCGCACACCCCTCGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* * * *
32660 TCC-AGCGATAGTGCCCCGAGCAAAAGAAAATACG-A-CACCAGCACATG-CTAGAGCCCAGCAT
777 TCCGA-CGATGGTGCCCCGAGCAAAAAAAAAAATGCAGCACCAGCACATGCCT-GAGCCCAGCAT
* * *
32721 GTCCGCTCGCAACCCTCGGTCCG---G----T---C------TG-A-T-T--
840 GTGCACCCGCAACCCTCGGTCCGTCCGATCTTACACTGGGAATGAACTCTAG
* * * *
32752 -TTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * *
32816 CGGCCAGAGGGGTAGGATGCACAAGCCAGGGATCAGCCAGGTCCCACCCTACGTGCTACTAATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAG-TAGGTCCC-CCCTACGTGCTACCAATCC
* * * * * * *
32881 TACT-ACTGCAACCCTCAG-TCGGTTTAATCTTTGACTAGGAATGAACTCCGTATGCCTAAGGCA
129 TACTGACTACAACCATCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * *** * *
32944 ACCGACGAAACGAGCGGGTAGGCGGGCGCTACGTCGATTAGAGAGGCGGGATGCGCAAGTCGTGG
194 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGG
*
33009 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTA
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
*
33074 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAGGACGACTCG
324 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
*** * *
33139 TTTTCTATTTTTTGTGATTTTTGAAACTTTTTACGGTTC-TGAATTTTTTGAAAATTTTTTCAGA
389 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAG-ATTTTTTTAAAA-TTTTTCAGA
* *
33203 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAA
452 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC--ACAAAAAA
* *
33268 TTTAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
515 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
33333 CACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
580 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
33398 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
645 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
33463 GTGCGTACACCCCCCTTCCGACCCCCCAATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCG
710 GTGCG--CACACCCC-T-CG-CCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * * *
33528 GTGATGCCTCCCGCCGATGGTGGCCTCGAG-AAAAAAAAAAATGCAGCACCAGCACATGCCCGAG
770 ACGATG-CT-CCGACGATGGT-GCCCCGAGCAAAAAAAAAAATGCAGCACCAGCACATGCCTGAG
* *
33592 CCCACCATGTGCACCCGCAACCCTCTGTCCGGTCCGATCTTACACTGGGAATGAACTCCATATG
832 CCCAGCATGTGCACCCGCAACCCTCGGTCC-GTCCGATCTTACACTGGGAATGAACT-C-TA-G
* * * * * * * * *
33656 CTTAGACTGGGAATGAACTCTGCACGCCTAAGTTAACCCATGAAACGAGTGTGCAGGCGCTCAGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * *
33721 CGGCCAGAGGGGCAGGATGCCCAAGCTGGGGATCAGTCGGGTCGCCCCCAATGTGCTATCGATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAGT-AGGTC-CCCCCTACGTGCTACCAATCC
* * * * *
33786 TAGT-ACCATAA-CACTCAG-TCTAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGC
129 TACTGACTACAACCA-TCAGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
33848 CAACTGACGAAACGAGAGGGCAGGCGGGCACTACGCCGGCCACAGAGGCAGGATGCACAAGCCGT
192 CAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGT
* * ** *
33913 GGATCGATGGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATATCACTTT
257 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
*
33978 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCATGTGAAG-TTCATGGCAAGACG
322 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
Statistics
Matches: 3360, Mismatches: 443, Indels: 203
0.84 0.11 0.05
Matches are distributed among these distances:
852 33 0.01
853 3 0.00
855 1 0.00
857 2 0.00
858 527 0.16
859 29 0.01
860 67 0.02
861 3 0.00
862 2 0.00
863 140 0.04
864 322 0.10
865 239 0.07
867 3 0.00
868 2 0.00
871 2 0.00
872 1 0.00
873 1 0.00
874 2 0.00
875 45 0.01
876 1 0.00
877 19 0.01
878 8 0.00
879 40 0.01
880 2 0.00
881 1 0.00
883 1 0.00
884 2 0.00
885 53 0.02
887 15 0.00
889 1 0.00
890 1 0.00
891 1 0.00
896 147 0.04
897 443 0.13
898 242 0.07
899 205 0.06
900 428 0.13
901 4 0.00
904 1 0.00
905 127 0.04
906 194 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAGTAGGTCCCCCCTACGTGCTACCAATCCTA
CTGACTACAACCATCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTCAGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTCAGC
TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCTCGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
ACGATGGTGCCCCGAGCAAAAAAAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGCAC
CCGCAACCCTCGGTCCGTCCGATCTTACACTGGGAATGAACTCTAG
Done.