Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168091.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_338, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33812
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
File 1 of 2
Found at i:100 original size:21 final size:22
Alignment explanation
Indices: 76--126 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
66 ATTAGTTAAA
*
76 TAATTATACTA-ATTATAATTT
1 TAATTATAATACATTATAATTT
*
97 TAATTA-AATACATTATATTTT
1 TAATTATAATACATTATAATTT
*
118 TAGTTATAA
1 TAATTATAA
127 CAATTAAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 3 0.12
21 20 0.80
22 2 0.08
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (22 bp):
TAATTATAATACATTATAATTT
Found at i:132 original size:21 final size:20
Alignment explanation
Indices: 76--132 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 20
66 ATTAGTTAAA
*
76 TAATTATACTAATTATAATTT
1 TAATTAAAC-AATTATAATTT
* *
97 TAATTAAATACATTATATTTT
1 TAATTAAACA-ATTATAATTT
*
118 TAGTTATAACAATTA
1 TAATTA-AACAATTA
133 AACAATTGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
20 1 0.03
21 25 0.86
22 3 0.10
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.49
Consensus pattern (20 bp):
TAATTAAACAATTATAATTT
Found at i:404 original size:35 final size:34
Alignment explanation
Indices: 316--405 Score: 105
Period size: 35 Copynumber: 2.7 Consensus size: 34
306 TTTTAAACTA
*
316 ATACT-ATTAATTGTTTATT-ATTTAGAATAATT
1 ATACTAATTAATTATTTATTAATTTAGAATAATT
* * * *
348 AAACTAA-TAATTATTTTTTAATTTATACTAATT
1 ATACTAATTAATTATTTATTAATTTAGAATAATT
381 ATTACTAATTAATTATTTATTAATT
1 A-TACTAATTAATTATTTATTAATT
406 AATATTATTT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
32 14 0.30
33 13 0.28
34 5 0.11
35 15 0.32
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.53
Consensus pattern (34 bp):
ATACTAATTAATTATTTATTAATTTAGAATAATT
Found at i:434 original size:11 final size:11
Alignment explanation
Indices: 355--443 Score: 51
Period size: 11 Copynumber: 8.0 Consensus size: 11
345 ATTAAACTAA
* *
355 TAATTATTTTT
1 TAATTATATAT
*
366 TAATT-TATAC
1 TAATTATATAT
376 TAATTATTACTAAT
1 TAATTA-TA-T-AT
*
390 TAATTATTTAT
1 TAATTATATAT
401 TAATTA-ATAT
1 TAATTATATAT
411 T-ATT-TGATGAT
1 TAATTAT-AT-AT
*
422 TATTTATATAT
1 TAATTATATAT
*
433 TAATAATATAT
1 TAATTATATAT
444 AATGAATAAT
Statistics
Matches: 60, Mismatches: 9, Indels: 18
0.69 0.10 0.21
Matches are distributed among these distances:
9 3 0.05
10 13 0.22
11 27 0.45
12 7 0.12
13 3 0.05
14 7 0.12
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.56
Consensus pattern (11 bp):
TAATTATATAT
Found at i:448 original size:28 final size:28
Alignment explanation
Indices: 392--448 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
382 TTACTAATTA
* * *
392 ATTATTTATTAATTAATATTATTTGATG
1 ATTATTTATTAATTAATAATATATAATG
420 ATTATTTA-TATATTAATAATATATAATG
1 ATTATTTATTA-ATTAATAATATATAATG
448 A
1 A
449 ATAATTTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.08
28 23 0.92
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (28 bp):
ATTATTTATTAATTAATAATATATAATG
Found at i:587 original size:33 final size:33
Alignment explanation
Indices: 550--618 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
540 TTATTAAATG
550 AATTAGTATTATTAAACAAATT-TTAATAATAAT
1 AATTAGTATTATT-AACAAATTATTAATAATAAT
* * * *
583 AATTATTATTATTATCAATTTATTAATAATATT
1 AATTAGTATTATTAACAAATTATTAATAATAAT
616 AAT
1 AAT
619 ATTATAATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 6 0.19
33 25 0.81
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.48
Consensus pattern (33 bp):
AATTAGTATTATTAACAAATTATTAATAATAAT
Found at i:774 original size:15 final size:15
Alignment explanation
Indices: 723--778 Score: 51
Period size: 15 Copynumber: 3.6 Consensus size: 15
713 TAGATAATTG
723 TATTTAATATTTTAA
1 TATTTAATATTTTAA
* * *
738 TATGAAATAATATTATAT
1 TAT---TTAATATTTTAA
756 TATTTAATATTTTAA
1 TATTTAATATTTTAA
771 TA-TTAATA
1 TATTTAATA
779 GATAATTGTT
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
14 6 0.19
15 14 0.44
18 12 0.38
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATATTTTAA
Found at i:1766 original size:10 final size:11
Alignment explanation
Indices: 1745--1784 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
1735 ATGTTTAACA
*
1745 TAATTCATAAT
1 TAATTAATAAT
1756 TAATT-ATAAT
1 TAATTAATAAT
1766 TAATTAATAA-
1 TAATTAATAAT
1776 T-ATTAATAA
1 TAATTAATAA
1785 ATAAATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 8 0.29
10 11 0.39
11 9 0.32
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (11 bp):
TAATTAATAAT
Found at i:1782 original size:13 final size:14
Alignment explanation
Indices: 1752--1794 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
1742 ACATAATTCA
*
1752 TAATTAATTATAAT
1 TAATTAATAATAAT
1766 TAATTAATAAT-AT
1 TAATTAATAATAAT
*
1779 TAATAAATAAATAAT
1 TAATTAAT-AATAAT
1794 T
1 T
1795 TATATAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.36
14 13 0.52
15 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TAATTAATAATAAT
Found at i:1801 original size:17 final size:17
Alignment explanation
Indices: 1771--1803 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
1761 ATAATTAATT
1771 AATAATATTAATAAATA
1 AATAATATTAATAAATA
1788 AATAAT-TTATATAAAT
1 AATAATATTA-ATAAAT
1804 TATTTGATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AATAATATTAATAAATA
Found at i:2816 original size:11 final size:12
Alignment explanation
Indices: 2752--2830 Score: 55
Period size: 11 Copynumber: 7.0 Consensus size: 12
2742 ATTAAACAAA
2752 TAATTTTATAAT
1 TAATTTTATAAT
*
2764 TAA--ATAT-AT
1 TAATTTTATAAT
*
2773 TAATATTTAATAAA
1 TAAT-TTT-ATAAT
2787 TAA--TTATAAT
1 TAATTTTATAAT
**
2797 TGTTTTTAT-AT
1 TAATTTTATAAT
2808 TAATTTTATAAT
1 TAATTTTATAAT
2820 TAA-TTTATAAT
1 TAATTTTATAAT
2831 AAGAATTACA
Statistics
Matches: 51, Mismatches: 8, Indels: 17
0.67 0.11 0.22
Matches are distributed among these distances:
9 5 0.10
10 8 0.16
11 19 0.37
12 13 0.25
13 2 0.04
14 4 0.08
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (12 bp):
TAATTTTATAAT
Found at i:3803 original size:21 final size:20
Alignment explanation
Indices: 3774--3817 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
3764 ATTAGCAATA
3774 TTAAAATATAATATTTTA-AT
1 TTAAAATAT-ATATTTTATAT
*
3794 TTAATAATATTTATTTTATAT
1 TTAA-AATATATATTTTATAT
3815 TTA
1 TTA
3818 TTACAATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TTAAAATATATATTTTATAT
Found at i:4237 original size:21 final size:21
Alignment explanation
Indices: 4152--4224 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
4142 AATTGTTATA
*
4152 TTAATAAATTATATATTAAA-
1 TTAATAAATTATTTATTAAAT
* *
4172 ATAAT-AATTA-TAATT-AAT
1 TTAATAAATTATTTATTAAAT
**
4190 TATGTTAAATTATTTATTAAAT
1 T-TAATAAATTATTTATTAAAT
4212 TTAATAAATTATT
1 TTAATAAATTATT
4225 ATTTATTGTT
Statistics
Matches: 39, Mismatches: 9, Indels: 9
0.68 0.16 0.16
Matches are distributed among these distances:
17 2 0.05
18 3 0.08
19 7 0.18
20 9 0.23
21 14 0.36
22 4 0.10
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (21 bp):
TTAATAAATTATTTATTAAAT
Found at i:4590 original size:13 final size:13
Alignment explanation
Indices: 4572--4601 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
4562 TTTCTATTTT
4572 ATTATTATAATTA
1 ATTATTATAATTA
*
4585 ATTATTTTAATTA
1 ATTATTATAATTA
4598 ATTA
1 ATTA
4602 ATTAATCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
ATTATTATAATTA
Found at i:4590 original size:21 final size:21
Alignment explanation
Indices: 4566--4607 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
4556 TATTAATTTC
*
4566 TATTTT-ATTATTATAATTAAT
1 TATTTTAATTAAT-TAATTAAT
4587 TATTTTAATTAATTAATTAAT
1 TATTTTAATTAATTAATTAAT
4608 CAATATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TATTTTAATTAATTAATTAAT
Found at i:4617 original size:18 final size:18
Alignment explanation
Indices: 4594--4639 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
4584 AATTATTTTA
*
4594 ATTAATTAATTAATCAAT
1 ATTAATTAATTAATAAAT
* *
4612 ATTAATTAAATATTAAAT
1 ATTAATTAATTAATAAAT
*
4630 GTTAATTAAT
1 ATTAATTAAT
4640 ATAAATAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (18 bp):
ATTAATTAATTAATAAAT
Found at i:5127 original size:17 final size:17
Alignment explanation
Indices: 5096--5141 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
5086 TAAGCCTATA
* *
5096 TAAATAATTTAATATTAT
1 TAAATAATATAATATT-C
5114 TAAATAA-ATAATATTC
1 TAAATAATATAATATTC
5130 TAAATAATATAA
1 TAAATAATATAA
5142 ATAAATTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 7 0.28
17 11 0.44
18 7 0.28
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAATAATATAATATTC
Found at i:6653 original size:12 final size:12
Alignment explanation
Indices: 6636--6662 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
6626 AATACAAATA
6636 AATCTAATTATT
1 AATCTAATTATT
6648 AATCTAATTATT
1 AATCTAATTATT
6660 AAT
1 AAT
6663 AAAGTATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (12 bp):
AATCTAATTATT
Found at i:6715 original size:21 final size:22
Alignment explanation
Indices: 6685--6739 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
6675 AGTTTATTAT
6685 ATAAACTATTGTTAT-AAGTATA
1 ATAAACTATTGTTATGAA-TATA
*
6707 ATAAA-TATTG-CATGAATATA
1 ATAAACTATTGTTATGAATATA
*
6727 ATAAATTATTGTT
1 ATAAACTATTGTT
6740 TATTATAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
20 11 0.39
21 12 0.43
22 5 0.18
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.42
Consensus pattern (22 bp):
ATAAACTATTGTTATGAATATA
Found at i:6746 original size:20 final size:19
Alignment explanation
Indices: 6676--6757 Score: 58
Period size: 21 Copynumber: 4.0 Consensus size: 19
6666 GTATTAATTA
6676 GTTTATTAT-ATAAACTATT
1 GTTTATTATAATAAA-TATT
*
6695 GTTATAAGTATAATAAATATT
1 GTT-T-ATTATAATAAATATT
* * *
6716 GCATGAATATAATAAATTATT
1 G-TTTATTATAATAAA-TATT
6737 GTTTATTATAAATTAAATATT
1 GTTTATTAT-AA-TAAATATT
6758 AATTTAAGTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
19 3 0.06
20 16 0.33
21 20 0.41
22 10 0.20
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.46
Consensus pattern (19 bp):
GTTTATTATAATAAATATT
Found at i:7097 original size:15 final size:15
Alignment explanation
Indices: 7077--7158 Score: 59
Period size: 14 Copynumber: 5.5 Consensus size: 15
7067 AAATATAGTA
7077 TATAATTATTATAAT
1 TATAATTATTATAAT
7092 TATAATTAATATATAAT
1 TATAATT-AT-TATAAT
*
7109 T-T-ATTAATATTAA-
1 TATAATTATTA-TAAT
7122 TATTAATTATTA-ACAT
1 TA-TAATTATTATA-AT
*
7138 TA-AATAATTAT-AT
1 TATAATTATTATAAT
7151 TATAATTA
1 TATAATTA
7159 AGTTATGTTA
Statistics
Matches: 53, Mismatches: 4, Indels: 21
0.68 0.05 0.27
Matches are distributed among these distances:
13 7 0.13
14 16 0.30
15 12 0.23
16 11 0.21
17 7 0.13
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (15 bp):
TATAATTATTATAAT
Found at i:7116 original size:19 final size:18
Alignment explanation
Indices: 7086--7134 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 18
7076 ATATAATTAT
7086 TATAATTA-TAATTAATA
1 TATAATTATTAATTAATA
7103 TATAATTTATTAATATTAATA
1 TATAA-TTATT-A-ATTAATA
7124 T-TAATTATTAA
1 TATAATTATTAA
7135 CATTAAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
17 6 0.21
18 4 0.14
19 6 0.21
20 4 0.14
21 8 0.29
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TATAATTATTAATTAATA
Found at i:7139 original size:19 final size:19
Alignment explanation
Indices: 7096--7148 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
7086 TATAATTATA
*
7096 ATTAATATATAATTTATTAAT
1 ATTAATAT-TAA-TTATTAAC
7117 ATTAATATTAATTATTAAC
1 ATTAATATTAATTATTAAC
7136 ATTAA-A-TAATTAT
1 ATTAATATTAATTAT
7149 ATTATAATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
17 7 0.23
18 1 0.03
19 12 0.39
20 3 0.10
21 8 0.26
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTAATATTAATTATTAAC
Found at i:7151 original size:19 final size:18
Alignment explanation
Indices: 7087--7152 Score: 50
Period size: 19 Copynumber: 3.7 Consensus size: 18
7077 TATAATTATT
*
7087 ATAATTATAATTAATA-T-
1 ATAATTAT-ATTAACATTA
*
7104 ATAATT-TATTAATATTA
1 ATAATTATATTAACATTA
7121 AT-ATTAATTATTAACATTAA
1 ATAATT-A-TATTAACATT-A
7141 ATAATTATATTA
1 ATAATTATATTA
7153 TAATTAAGTT
Statistics
Matches: 41, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
15 7 0.17
16 5 0.12
17 8 0.20
19 14 0.34
20 4 0.10
21 3 0.07
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
ATAATTATATTAACATTA
Found at i:7642 original size:11 final size:11
Alignment explanation
Indices: 7628--7652 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7618 TGACTATTAT
7628 TTATAAATATA
1 TTATAAATATA
7639 TTATAAATATA
1 TTATAAATATA
7650 TTA
1 TTA
7653 ACTAACAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TTATAAATATA
Found at i:7798 original size:23 final size:24
Alignment explanation
Indices: 7771--7815 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
7761 AATTAAATTT
7771 TTAATCTTA-TTAA-AAATTATTAG
1 TTAAT-TTATTTAATAAATTATTAG
7794 TTAATTTATTTAATAAATTATT
1 TTAATTTATTTAATAAATTATT
7816 GCTATAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 3 0.15
23 9 0.45
24 8 0.40
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (24 bp):
TTAATTTATTTAATAAATTATTAG
Found at i:7911 original size:13 final size:14
Alignment explanation
Indices: 7907--7952 Score: 60
Period size: 13 Copynumber: 3.4 Consensus size: 14
7897 AAAATAATTA
7907 AATAATT-AATAAT
1 AATAATTAAATAAT
7920 AATAA-TAAATAAT
1 AATAATTAAATAAT
* *
7933 AATAATTAATTATT
1 AATAATTAAATAAT
7947 AATAAT
1 AATAAT
7953 ACTATAGTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 1 0.03
13 16 0.55
14 12 0.41
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AATAATTAAATAAT
Found at i:7918 original size:26 final size:26
Alignment explanation
Indices: 7889--7953 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
7879 ATTATTATTT
7889 ATAATTAT-A-AAATAATTAAATAATTA
1 ATAATTATAATAAATAA-T-AATAATTA
*
7915 ATAATAATAATAAATAATAATAATTA
1 ATAATTATAATAAATAATAATAATTA
*
7941 ATTATTAATAATA
1 ATAATT-ATAATA
7954 CTATAGTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
26 19 0.58
27 8 0.24
28 6 0.18
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (26 bp):
ATAATTATAATAAATAATAATAATTA
Found at i:7919 original size:7 final size:7
Alignment explanation
Indices: 7899--7952 Score: 67
Period size: 7 Copynumber: 7.9 Consensus size: 7
7889 ATAATTATAA
7899 AATAATT
1 AATAATT
7906 AAATAATT
1 -AATAATT
7914 AATAA-T
1 AATAATT
*
7920 AATAATA
1 AATAATT
7927 AATAA-T
1 AATAATT
7933 AATAATT
1 AATAATT
*
7940 AATTATT
1 AATAATT
7947 AATAAT
1 AATAAT
7953 ACTATAGTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
6 11 0.28
7 22 0.55
8 7 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (7 bp):
AATAATT
Found at i:7921 original size:3 final size:3
Alignment explanation
Indices: 7889--7953 Score: 53
Period size: 3 Copynumber: 21.0 Consensus size: 3
7879 ATTATTATTT
* *
7889 ATA ATT ATA A-A ATA ATT A-A ATA ATTA ATA ATA ATA ATAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA AT-A ATA ATA
*
7934 ATA ATTA ATTA TTA ATA ATA
1 ATA A-TA A-TA ATA ATA ATA
7954 CTATAGTATA
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
2 3 0.06
3 36 0.71
4 12 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:7922 original size:10 final size:10
Alignment explanation
Indices: 7889--7952 Score: 55
Period size: 10 Copynumber: 6.5 Consensus size: 10
7879 ATTATTATTT
*
7889 ATAATTATAAA
1 ATAATTA-ATA
7900 ATAATT-A-A
1 ATAATTAATA
7908 ATAATTAATA
1 ATAATTAATA
7918 ATAA-TAATAA
1 ATAATTAAT-A
7928 ATAA-TAATA
1 ATAATTAATA
*
7937 ATTAATTATTA
1 A-TAATTAATA
7948 ATAAT
1 ATAAT
7953 ACTATAGTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 11
0.80 0.02 0.19
Matches are distributed among these distances:
8 7 0.15
9 8 0.17
10 21 0.45
11 11 0.23
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
ATAATTAATA
Found at i:8086 original size:20 final size:19
Alignment explanation
Indices: 8049--8106 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 19
8039 TTTAAAGATT
*
8049 ATAATATTCATAATTTATTA
1 ATAATATTAATAA-TTATTA
*
8069 CTAATAGTT-ATATATTATTA
1 ATAATA-TTAATA-ATTATTA
8089 ATAATATTAATAATTATT
1 ATAATATTAATAATTATT
8107 TAATGAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
19 8 0.24
20 22 0.67
21 3 0.09
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (19 bp):
ATAATATTAATAATTATTA
Found at i:8109 original size:20 final size:19
Alignment explanation
Indices: 8049--8132 Score: 59
Period size: 20 Copynumber: 4.3 Consensus size: 19
8039 TTTAAAGATT
8049 ATAATATTCATAATT-TATTA
1 ATAATATT-ATAATTAT-TTA
*
8069 CTAATAGTTATATATTA-TTA
1 ATAATA-TTATA-ATTATTTA
8089 ATAATATTAATAATTATTTA
1 ATAATATT-ATAATTATTTA
* *
8109 ATGA-ATTAT-ATTATATGA
1 ATAATATTATAATTAT-TTA
8127 ATAATA
1 ATAATA
8133 CTATTTTATT
Statistics
Matches: 52, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
17 5 0.10
18 7 0.13
19 10 0.19
20 25 0.48
21 5 0.10
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (19 bp):
ATAATATTATAATTATTTA
Found at i:8586 original size:34 final size:37
Alignment explanation
Indices: 8531--8602 Score: 89
Period size: 36 Copynumber: 2.0 Consensus size: 37
8521 TTATATTAAA
*
8531 TTTATAAATATTTTAATATG-T-TTAATTAATTATTT
1 TTTATAAATATTTTAATATGTTATTAAGTAATTATTT
*
8566 TTTAT-AAT-TTTTTATAATGTTATTAAGTAATTATTT
1 TTTATAAATATTTTAAT-ATGTTATTAAGTAATTATTT
8602 T
1 T
8603 ATAATCTCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
33 6 0.19
34 6 0.19
35 6 0.19
36 14 0.44
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (37 bp):
TTTATAAATATTTTAATATGTTATTAAGTAATTATTT
Found at i:8670 original size:19 final size:20
Alignment explanation
Indices: 8611--8672 Score: 65
Period size: 21 Copynumber: 3.1 Consensus size: 20
8601 TTATAATCTC
* *
8611 TTATATTTAATATTATTATAG
1 TTATATATAATATAATTA-AG
*
8632 -TATTATATAATATCATTAAG
1 TTA-TATATAATATAATTAAG
8652 TTATATATAA-ATAATTAAG
1 TTATATATAATATAATTAAG
8671 TT
1 TT
8673 TCAAATCAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
19 10 0.28
20 11 0.31
21 15 0.42
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.50
Consensus pattern (20 bp):
TTATATATAATATAATTAAG
Found at i:9083 original size:26 final size:27
Alignment explanation
Indices: 9054--9130 Score: 75
Period size: 26 Copynumber: 2.7 Consensus size: 27
9044 AAGTTTATTA
*
9054 AATAATCATTAAAATAATAT-TTAATT
1 AATAATAATTAAAATAATATATTAATT
* *
9080 AATAATAATTAATATTATATATTAATT
1 AATAATAATTAAAATAATATATTAATT
9107 ACAATTAATTAATTATAAATAATA
1 --AA-TAA-TAATTA-AAATAATA
9131 CTAATCTAAT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 17 0.43
27 6 0.15
29 2 0.05
30 3 0.08
31 6 0.15
32 6 0.15
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.43
Consensus pattern (27 bp):
AATAATAATTAAAATAATATATTAATT
Found at i:9085 original size:14 final size:14
Alignment explanation
Indices: 9033--9144 Score: 56
Period size: 14 Copynumber: 7.8 Consensus size: 14
9023 TAAATTATTA
9033 AATTAACTAATAAGTT
1 AATTAA-TAATAA-TT
* *
9049 TATTAAATAATCATT
1 AATT-AATAATAATT
*
9064 AA--AATAATATTT
1 AATTAATAATAATT
9076 AATTAATAATAATT
1 AATTAATAATAATT
*
9090 AA-T-ATTATATATT
1 AATTAATAATA-ATT
*
9103 AATTACA-ATTAATT
1 AATTA-ATAATAATT
9117 AATT-ATAAATAATACT
1 AATTAAT-AATAAT--T
9133 AATCTAATAATA
1 AAT-TAATAATA
9145 TTCTGAAAAT
Statistics
Matches: 73, Mismatches: 10, Indels: 25
0.68 0.09 0.23
Matches are distributed among these distances:
12 16 0.22
13 6 0.08
14 24 0.33
15 5 0.07
16 13 0.18
17 7 0.10
18 2 0.03
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (14 bp):
AATTAATAATAATT
Found at i:9939 original size:15 final size:15
Alignment explanation
Indices: 9921--9969 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
9911 TAAAAAATTA
*
9921 TATATTATTTATAAT
1 TATATTATATATAAT
* *
9936 TATATAATATATACT
1 TATATTATATATAAT
*
9951 TATAATATATATAAAT
1 TATATTATATAT-AAT
9967 TAT
1 TAT
9970 CAAATAAATT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
15 22 0.81
16 5 0.19
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (15 bp):
TATATTATATATAAT
Found at i:10151 original size:12 final size:13
Alignment explanation
Indices: 10136--10165 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
10126 TTAAATAACA
10136 ATATAAATTA-TT
1 ATATAAATTATTT
10148 ATATAAATTATTT
1 ATATAAATTATTT
10161 ATATA
1 ATATA
10166 TAAAATAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
ATATAAATTATTT
Found at i:10167 original size:15 final size:15
Alignment explanation
Indices: 10136--10222 Score: 51
Period size: 15 Copynumber: 5.9 Consensus size: 15
10126 TTAAATAACA
10136 ATATAAATTA--T-T
1 ATATAAATTATTTAT
10148 ATATAAATTATTTAT
1 ATATAAATTATTTAT
* *
10163 ATATAAAATAATTAT
1 ATATAAATTATTTAT
*
10178 ATTATTATAA-TATATA-
1 A-TA-TA-AATTATTTAT
*
10194 AAATAAATTTATTTA-
1 ATATAAA-TTATTTAT
10209 ATATAAAATTATTT
1 ATAT-AAATTATTT
10223 TTTATTTATA
Statistics
Matches: 59, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
12 10 0.17
13 2 0.03
14 3 0.05
15 30 0.51
16 6 0.10
17 6 0.10
18 2 0.03
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATATAAATTATTTAT
Found at i:10176 original size:28 final size:26
Alignment explanation
Indices: 10136--10199 Score: 76
Period size: 26 Copynumber: 2.4 Consensus size: 26
10126 TTAAATAACA
* *
10136 ATAT-AAATTATTATATAAATTATTTAT
1 ATATAAAATAATTATAT-AATTA-TAAT
*
10163 ATATAAAATAATTATATTATTATAAT
1 ATATAAAATAATTATATAATTATAAT
10189 ATATAAAATAA
1 ATATAAAATAA
10200 ATTTATTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 14 0.42
27 8 0.24
28 11 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (26 bp):
ATATAAAATAATTATATAATTATAAT
Found at i:10190 original size:26 final size:23
Alignment explanation
Indices: 10154--10213 Score: 79
Period size: 26 Copynumber: 2.6 Consensus size: 23
10144 TATTATATAA
10154 ATTATTT-ATATATAAAATAATTAT
1 ATTATTTAATATATAAAATAA--AT
10178 ATTATTATAATATATAAAATAAAT
1 ATTATT-TAATATATAAAATAAAT
10202 -TTATTTAATATA
1 ATTATTTAATATA
10214 AAATTATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
22 7 0.21
23 5 0.15
24 8 0.24
25 1 0.03
26 13 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
ATTATTTAATATATAAAATAAAT
Found at i:10212 original size:20 final size:21
Alignment explanation
Indices: 10150--10233 Score: 77
Period size: 20 Copynumber: 4.0 Consensus size: 21
10140 AAATTATTAT
10150 ATAAA-TTATTTATATATAAA
1 ATAAATTTATTTATATATAAA
10170 ATAATTATATTATTATAATATATAAA
1 ATAA--AT-TTATT-T-ATATATAAA
10196 ATAAATTTATTTA-ATATAAA
1 ATAAATTTATTTATATATAAA
* *
10216 AT-TATTT-TTTATTTATAA
1 ATAAATTTATTTATATATAA
10234 CATTAAAATT
Statistics
Matches: 55, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
18 4 0.07
19 9 0.16
20 13 0.24
21 1 0.02
22 2 0.04
23 5 0.09
24 7 0.13
25 1 0.02
26 13 0.24
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATAAATTTATTTATATATAAA
Found at i:10213 original size:46 final size:45
Alignment explanation
Indices: 10150--10242 Score: 118
Period size: 46 Copynumber: 2.0 Consensus size: 45
10140 AAATTATTAT
*
10150 ATAAATTATTTATATATAAAATAATTATATTA-TTATAATATATAAA
1 ATAAATTATTTATATATAAAATAATT-TATTATTTATAACAT-TAAA
* *
10196 ATAAATTTATTTA-ATATAAAATTATTTTTTATTTATAACATTAAA
1 ATAAA-TTATTTATATATAAAATAATTTATTATTTATAACATTAAA
10241 AT
1 AT
10243 TTCTTATTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
45 10 0.24
46 25 0.60
47 7 0.17
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (45 bp):
ATAAATTATTTATATATAAAATAATTTATTATTTATAACATTAAA
Found at i:10226 original size:22 final size:22
Alignment explanation
Indices: 10155--10230 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
10145 ATTATATAAA
* *
10155 TTATTTATATATAAAATAATTATA
1 TTATTTA-ATATAAAATTATT-TT
* **
10179 TTATTATAATATATAAAATA-AAT
1 TTATT-TAATATA-AAATTATTTT
10202 TTATTTAATATAAAATTATTTT
1 TTATTTAATATAAAATTATTTT
10224 TTATTTA
1 TTATTTA
10231 TAACATTAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
21 5 0.12
22 15 0.37
23 5 0.12
24 10 0.24
25 6 0.15
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
TTATTTAATATAAAATTATTTT
Found at i:10607 original size:25 final size:24
Alignment explanation
Indices: 10559--10608 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
10549 GTTTATTAAT
* * *
10559 ATAATTAATTATTAATTATGATAA
1 ATAATTAAATATAAATTATAATAA
10583 ATAATTAAATACTAAATTATAATAA
1 ATAATTAAATA-TAAATTATAATAA
10608 A
1 A
10609 ATGTTGAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (24 bp):
ATAATTAAATATAAATTATAATAA
Found at i:10680 original size:16 final size:18
Alignment explanation
Indices: 10649--10683 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
10639 TTAATTTGTA
10649 TACAATTATAAATATTAT
1 TACAATTATAAATATTAT
10667 TACAA-TAT-AATATTAT
1 TACAATTATAAATATTAT
10683 T
1 T
10684 GTAAATTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 3 0.18
18 5 0.29
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (18 bp):
TACAATTATAAATATTAT
Found at i:10903 original size:24 final size:25
Alignment explanation
Indices: 10863--10913 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
10853 TAACAATTAA
*
10863 TAATTTAACTTATTATAAATTATAT
1 TAATATAACTTATTATAAATTATAT
* *
10888 TAATATAA-TTATTATATATTTTAT
1 TAATATAACTTATTATAAATTATAT
10912 TA
1 TA
10914 TTGTTTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (25 bp):
TAATATAACTTATTATAAATTATAT
Found at i:11024 original size:40 final size:40
Alignment explanation
Indices: 10987--11062 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
10977 TTAATTATAT
* *
10987 ATAATCTAA-ATAATATTTATATAA-TATCAATATATTATTA
1 ATAAT-TAATATAATATATAAATAATTAT-AATATATTATTA
*
11027 ATAATTAATATTATATATAAATAATTATAATATATT
1 ATAATTAATATAATATATAAATAATTATAATATATT
11063 TAGATAAACA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
39 3 0.10
40 25 0.81
41 3 0.10
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (40 bp):
ATAATTAATATAATATATAAATAATTATAATATATTATTA
Found at i:11046 original size:16 final size:16
Alignment explanation
Indices: 10993--11061 Score: 52
Period size: 17 Copynumber: 4.1 Consensus size: 16
10983 ATATATAATC
10993 TAAATAATATT-TATA
1 TAAATAATATTATATA
11008 TAATATCAATA-TATTATTAA
1 TAA-AT-AATATTA-TA-T-A
*
11028 TAATTAATATTATATA
1 TAAATAATATTATATA
*
11044 TAAATAATTATAATATA
1 TAAATAA-TATTATATA
11061 T
1 T
11062 TTAGATAAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
15 3 0.07
16 10 0.23
17 14 0.33
18 8 0.19
19 4 0.09
20 4 0.09
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (16 bp):
TAAATAATATTATATA
Found at i:11052 original size:20 final size:20
Alignment explanation
Indices: 10980--11053 Score: 68
Period size: 20 Copynumber: 3.9 Consensus size: 20
10970 ATATTACTTA
* *
10980 ATTATATATAATCTAAATAAT
1 ATTATATATAA-ATAATTAAT
*
11001 ATT-TATAT-AAT-ATCAAT
1 ATTATATATAAATAATTAAT
*
11018 A-TAT-TATTAATAATTAAT
1 ATTATATATAAATAATTAAT
11036 ATTATATATAAATAATTA
1 ATTATATATAAATAATTA
11054 TAATATATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
16 4 0.09
17 9 0.21
18 7 0.16
19 4 0.09
20 16 0.37
21 3 0.07
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (20 bp):
ATTATATATAAATAATTAAT
Found at i:11069 original size:19 final size:18
Alignment explanation
Indices: 10956--11069 Score: 58
Period size: 20 Copynumber: 5.9 Consensus size: 18
10946 TATTATAAAA
10956 TATAATATATTTTAAT-AT
1 TATAATATA-TTTAATAAT
*
10974 TACTTAAT-TATAT-ATAAT
1 TA--TAATATATTTAATAAT
10992 CTA-AATAATATTTATATAA-
1 -TATAAT-ATATTTA-ATAAT
11011 TATCAATATATTATTAATAAT
1 TAT-AATATA-T-TTAATAAT
* *
11032 TAATATTATATATAAATAAT
1 T-ATAATATAT-TTAATAAT
11052 TATAATATATTTAGATAA
1 TATAATATATTTA-ATAA
11070 ACAACAATAT
Statistics
Matches: 75, Mismatches: 6, Indels: 29
0.68 0.05 0.26
Matches are distributed among these distances:
16 3 0.04
17 2 0.03
18 14 0.19
19 19 0.25
20 26 0.35
21 9 0.12
22 2 0.03
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (18 bp):
TATAATATATTTAATAAT
Found at i:11198 original size:22 final size:22
Alignment explanation
Indices: 11171--11220 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
11161 TAAATTAATT
* *
11171 ATATTACTAATTAATTTAA-CAA
1 ATATTA-TAATAAAATTAATCAA
11193 ATATTATAATAAAATTAATCAA
1 ATATTATAATAAAATTAATCAA
*
11215 TTATTA
1 ATATTA
11221 ATTAACTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (22 bp):
ATATTATAATAAAATTAATCAA
Found at i:11436 original size:25 final size:25
Alignment explanation
Indices: 11396--11476 Score: 71
Period size: 25 Copynumber: 3.3 Consensus size: 25
11386 TGTTATAATT
11396 AAATATATATTA-TATTAATTAAATA
1 AAATAT-TATTACTATTAATTAAATA
* *
11421 AAATATTATTACTATT--TTTATTA
1 AAATATTATTACTATTAATTAAATA
* *
11444 ATAATATTTAATACTA-TAATTATATA
1 A-AATA-TTATTACTATTAATTAAATA
11470 AAATATT
1 AAATATT
11477 TGAATAAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
23 6 0.13
24 12 0.27
25 22 0.49
26 5 0.11
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.48
Consensus pattern (25 bp):
AAATATTATTACTATTAATTAAATA
Found at i:11477 original size:25 final size:25
Alignment explanation
Indices: 11411--11482 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 25
11401 TATATTATAT
* *
11411 TAATTAAATAAAATA-TTATTACTA
1 TAATTATATAAAATATTTAATACTA
**
11435 TTTTTAT-TAATAATATTTAATACTA
1 TAATTATATAA-AATATTTAATACTA
11460 TAATTATATAAAATATTTGAATA
1 TAATTATATAAAATATTT-AATA
11483 AATTCATATA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
23 3 0.08
24 8 0.21
25 20 0.53
26 7 0.18
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (25 bp):
TAATTATATAAAATATTTAATACTA
Found at i:12175 original size:25 final size:23
Alignment explanation
Indices: 12147--12211 Score: 55
Period size: 22 Copynumber: 2.8 Consensus size: 23
12137 TGATACTTGG
*
12147 ATTAATATATATATATATTA-AACTA
1 ATTAATATATAT-TATAATAGAA--A
*
12172 ATTATTATA-ATTATAATAGAAA
1 ATTAATATATATTATAATAGAAA
*
12194 ATTAATATATGTTA-AATA
1 ATTAATATATATTATAATA
12212 TGTTAAAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
22 13 0.38
23 9 0.26
24 4 0.12
25 8 0.24
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (23 bp):
ATTAATATATATTATAATAGAAA
Found at i:12481 original size:24 final size:24
Alignment explanation
Indices: 12454--12501 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
12444 CTACTTAAAA
* * *
12454 TAAAAAGAATAGTTTGAATAATAT
1 TAAAAACAATAGTATAAATAATAT
*
12478 TAAAAACAATTGTATAAATAATAT
1 TAAAAACAATAGTATAAATAATAT
12502 ATTGTATATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.56, C:0.02, G:0.08, T:0.33
Consensus pattern (24 bp):
TAAAAACAATAGTATAAATAATAT
Found at i:12590 original size:24 final size:26
Alignment explanation
Indices: 12543--12590 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
12533 CAGTATAACC
*
12543 AATATACTTAAGAGTTAATCTTAAAT
1 AATATACTTAAGAGTTAATATTAAAT
*
12569 AATATATTTAA-AG-TAATATTAA
1 AATATACTTAAGAGTTAATATTAA
12591 TTATTAATTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 2 0.10
26 10 0.50
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (26 bp):
AATATACTTAAGAGTTAATATTAAAT
Found at i:13025 original size:15 final size:16
Alignment explanation
Indices: 13000--13039 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
12990 TATATTTTTG
13000 TTAATTCAATTTAATA-
1 TTAATT-AATTTAATAT
13016 TTAATTAA-TTAATAT
1 TTAATTAATTTAATAT
13031 TTAATTAAT
1 TTAATTAAT
13040 AAAAAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 6 0.27
15 10 0.45
16 6 0.27
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TTAATTAATTTAATAT
Found at i:13262 original size:15 final size:14
Alignment explanation
Indices: 13242--13295 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 14
13232 ATTTATTTAT
13242 ATAATATAATAATTA
1 ATAATAT-ATAATTA
13257 ATAATAT-TAATTA
1 ATAATATATAATTA
13270 AT-ATAATAGTAATTA
1 ATAAT-ATA-TAATTA
13285 AT-ATA-ATAATT
1 ATAATATATAATT
13296 CCAATAGTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
12 7 0.19
13 11 0.31
14 1 0.03
15 17 0.47
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (14 bp):
ATAATATATAATTA
Found at i:13274 original size:30 final size:33
Alignment explanation
Indices: 13231--13294 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 33
13221 TTATTATATC
* *
13231 TATTTATTTATATAATA-TAA-TAAT-TAATAA
1 TATTAATTAATATAATAGTAATTAATATAATAA
13261 TATTAATTAATATAATAGTAATTAATATAATAA
1 TATTAATTAATATAATAGTAATTAATATAATAA
13294 T
1 T
13295 TCCAATAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 15 0.52
31 3 0.10
32 4 0.14
33 7 0.24
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (33 bp):
TATTAATTAATATAATAGTAATTAATATAATAA
Found at i:13354 original size:11 final size:12
Alignment explanation
Indices: 13331--13372 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 12
13321 ATTCCAAATA
*
13331 ATTATAATAATT
1 ATTATAATTATT
13343 ATT-TAATTATT
1 ATTATAATTATT
13354 ATTATAA-TATT
1 ATTATAATTATT
*
13365 AATATAAT
1 ATTATAAT
13373 AATATATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 20 0.77
12 6 0.23
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTATAATTATT
Found at i:13404 original size:17 final size:16
Alignment explanation
Indices: 13357--13416 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 16
13347 AATTATTATT
*
13357 ATAATAT-TAATA-TA
1 ATAATATATAAAATTA
*
13371 ATAATATATAATCATTA
1 ATAATATATAA-AATTA
13388 ATAATATCATAAAATT-
1 ATAATAT-ATAAAATTA
13404 ATAA-ATATAAAAT
1 ATAATATATAAAAT
13417 AATGATAAAT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
14 14 0.35
15 5 0.12
16 5 0.12
17 12 0.30
18 4 0.10
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.38
Consensus pattern (16 bp):
ATAATATATAAAATTA
Found at i:14007 original size:179 final size:179
Alignment explanation
Indices: 13703--14261 Score: 573
Period size: 180 Copynumber: 3.1 Consensus size: 179
13693 TAATTATTTG
* *
13703 AAATAATTAAATTAATT-ATATTCCAAAATTTAATAAGTGAAAA-TTTAAAAATAAA-TTGTTTT
1 AAATAATTAAATTTATTAATATTCCAAAATTTAATAAGTAAAAATTTTAAAAATAAATTTGTTTT
* * *
13765 TTGAACATGTTGAATAAGTTCTGACTATTTGAAAAAATTATTTATTTTAAATAGTTATGACCTTT
66 TTGAACATGTTAAATAAGTTCTGACTATTTGAAAAAATTATCTATTTCAAATAGTTATGACCTTT
* **
13830 TTTTTGTGATAAACCAATTGTTTTCTGTCCATACAAGCTTATACCGAATA
131 TGTTTGTGATAAACCAATTG-TTTCTGTCCATACAAGCTTATACAAAATA
13880 AAATAATTAAATTTATTAATATTCCAAAATTTAATAAGTAAAAATTTTAAAAATAAATTTGTTTT
1 AAATAATTAAATTTATTAATATTCCAAAATTTAATAAGTAAAAATTTTAAAAATAAATTTGTTTT
*
13945 TTGAACATGTTTAAAT-AGATT-TGACTATTTG-AACAATTATCTATTTCAAATAGTTATGACCT
66 TTGAACATG-TTAAATAAG-TTCTGACTATTTGAAAAAATTATCTATTTCAAATAGTTATGACCT
* * ** * *
14007 TTTGTTTGTGATGAATCAATTGTTTCTGTCTGTATAAGCTTATTCAAAATA
129 TTTGTTTGTGATAAACCAATTGTTTCTGTCCATACAAGCTTATACAAAATA
* * * *
14058 AAATAATACTAAATTTAATAATATTCCAACAA-TTAATAAGTAAAAGATTTAAAAAATAAATCTA
1 AAATAAT--TAAATTTATTAATATTCCAA-AATTTAATAAGTAAAA-ATTTTAAAAATAAATTTG
** ** * * * * * * * *
14122 TTTACTGAGTAAGCTTAAAT-AGTTATAACTGTTTG-AACAATTTTTTATTTCTAATAGTTAT-A
62 TTTTTTGAACATG-TTAAATAAGTTCTGACTATTTGAAAAAATTATCTATTTCAAATAGTTATGA
* * ** * * * * *
14184 -ATTTTGTTTTGTCATAAAATAATTGTTCCTATTCATACAAGTTTATTCAAAATA
126 CCTTTTG-TTTGTGATAAACCAATTGTTTCTGTCCATACAAGCTTATACAAAATA
* *
14238 AAATAATATTACTTTATTAATATT
1 AAATAAT-TAAATTTATTAATATT
14262 TTGCAAATTA
Statistics
Matches: 325, Mismatches: 46, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
177 16 0.05
178 55 0.17
179 77 0.24
180 106 0.33
181 71 0.22
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (179 bp):
AAATAATTAAATTTATTAATATTCCAAAATTTAATAAGTAAAAATTTTAAAAATAAATTTGTTTT
TTGAACATGTTAAATAAGTTCTGACTATTTGAAAAAATTATCTATTTCAAATAGTTATGACCTTT
TGTTTGTGATAAACCAATTGTTTCTGTCCATACAAGCTTATACAAAATA
Found at i:14210 original size:180 final size:180
Alignment explanation
Indices: 13703--14322 Score: 576
Period size: 179 Copynumber: 3.5 Consensus size: 180
13693 TAATTATTTG
* *
13703 AAATAAT-TAAATTAATT-ATATTCCAAAATTTAATAAGTGAAA-ATTT-AAAAATAAAT-TGTT
1 AAATAATATAAATTTATTAATATTCCAAAA-TTAATAAGTAAAAGATTTAAAAAATAAATATGTT
** * * * *
13763 TTTTGAACATG-TTGAATA-AGTTCTGACTATTTGAAAAAATTATTTATTT-TAAATAGTTATGA
65 TACTGAACAAGCTTAAATAGA-TT-TAACTATTTG-AACAATTATTTATTTCT-AATAGTTATGA
** * * **
13825 CCTTTT-TTTTGTGATAAACCAATTGTTTTCTGTCCATACAAGCTTATACCGAATA
126 CCTTTTGTTTTGTGATAAAATAATTG-TTTCTGTCTATACAAGCTTATTCAAAATA
* *
13880 AAATAAT-TAAATTTATTAATATTCCAAAATTTAATAAGTAAAA-ATTTTAAAAATAAATTTGTT
1 AAATAATATAAATTTATTAATATTCCAAAA-TTAATAAGTAAAAGATTTAAAAAATAAATATGTT
** * * * * *
13943 TTTTGAACATGTTTAAATAGATTTGACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTT
65 TACTGAACAAGCTTAAATAGATTTAACTATTTGAACAATTATTTATTTCTAATAGTTATGACCTT
* * *
14008 TTG-TTTGTGAT-GAATCAATTGTTTCTGTCTGTATAAGCTTATTCAAAATA
130 TTGTTTTGTGATAAAAT-AATTGTTTCTGTCTATACAAGCTTATTCAAAATA
* * *
14058 AAATAATACTAAATTTAATAATATTCCAACAATTAATAAGTAAAAGATTTAAAAAATAAATCTAT
1 AAATAATA-TAAATTTATTAATATTCCAA-AATTAATAAGTAAAAGATTTAAAAAATAAATATGT
** * * *
14123 TTACTGAGTAAGCTTAAATAG-TTATAACTGTTTGAACAATTTTTTATTTCTAATAGTTAT-A-A
64 TTACTGAACAAGCTTAAATAGATT-TAACTATTTGAACAATTATTTATTTCTAATAGTTATGACC
* * * *
14185 TTTTGTTTTGTCATAAAATAATTGTTCCTAT-TCATACAAGTTTATTCAAAATA
128 TTTTGTTTTGTGATAAAATAATTGTTTCTGTCT-ATACAAGCTTATTCAAAATA
* * * * **
14238 AAATAATATTACTTTATTAATATTTTGC-AAATTAATAGGTAGGAGATTTAAAAAATAAATATGT
1 AAATAATATAAATTTATTAATA--TTCCAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGT
14302 TTACTGAACAAG-TTCAAATAG
64 TTACTGAACAAGCTT-AAATAG
14323 TCATGTTAAA
Statistics
Matches: 375, Mismatches: 49, Indels: 36
0.82 0.11 0.08
Matches are distributed among these distances:
177 16 0.04
178 61 0.16
179 116 0.31
180 103 0.27
181 78 0.21
182 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.41
Consensus pattern (180 bp):
AAATAATATAAATTTATTAATATTCCAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTT
ACTGAACAAGCTTAAATAGATTTAACTATTTGAACAATTATTTATTTCTAATAGTTATGACCTTT
TGTTTTGTGATAAAATAATTGTTTCTGTCTATACAAGCTTATTCAAAATA
Found at i:15023 original size:14 final size:15
Alignment explanation
Indices: 14986--15027 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
14976 ATTAAAATCC
14986 TTATTAAATATATAAT
1 TTATTAAAT-TATAAT
* *
15002 TCAATAAATT-TAAT
1 TTATTAAATTATAAT
15016 TTATTAAATTAT
1 TTATTAAATTAT
15028 TAATATATAG
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
14 12 0.57
15 2 0.10
16 7 0.33
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
TTATTAAATTATAAT
Found at i:15266 original size:21 final size:21
Alignment explanation
Indices: 15242--15301 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 21
15232 TAATTATACC
*
15242 TAATATTGATATTATTATTTG
1 TAATATTGATATTATTATTTA
* *
15263 TAAT-CTGTATATTAATTAGTTA
1 TAATATTG-ATATT-ATTATTTA
*
15285 TAATATT-ATTTTATTAT
1 TAATATTGATATTATTAT
15302 AATATAGATA
Statistics
Matches: 30, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
20 6 0.20
21 13 0.43
22 10 0.33
23 1 0.03
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (21 bp):
TAATATTGATATTATTATTTA
Found at i:15511 original size:23 final size:22
Alignment explanation
Indices: 15470--15530 Score: 69
Period size: 23 Copynumber: 3.0 Consensus size: 22
15460 AATATAGAGC
*
15470 ATTTGTTT-ATAATATAAATTT
1 ATTTGTTTAATTATATAAATTT
15491 AATTTGTTTAATTATATAAA--T
1 -ATTTGTTTAATTATATAAATTT
15512 ATTTG-TTAATTA-ATAAATT
1 ATTTGTTTAATTATATAAATT
15531 GTTGTTATTG
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
18 5 0.14
19 7 0.20
20 5 0.14
21 1 0.03
22 8 0.23
23 9 0.26
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (22 bp):
ATTTGTTTAATTATATAAATTT
Found at i:15537 original size:18 final size:19
Alignment explanation
Indices: 15492--15529 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
15482 TATAAATTTA
15492 ATTTGTTTAATTATATAAAT
1 ATTTG-TTAATTATATAAAT
15512 ATTTGTTAATTA-ATAAAT
1 ATTTGTTAATTATATAAAT
15530 TGTTGTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 7 0.39
20 5 0.28
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (19 bp):
ATTTGTTAATTATATAAAT
Found at i:16917 original size:182 final size:182
Alignment explanation
Indices: 15991--17211 Score: 794
Period size: 182 Copynumber: 6.7 Consensus size: 182
15981 ATGATTTTTA
* * * *
15991 AATGTCTTATTAATTCTTAAAATATTAATAAATTGGCATTATTTTATTTCAAATAAGCTTGTATG
1 AATG-CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATG
* * * * *
16056 --TTGAAAAGCAATTGTTTTATGACAAAACAAAAAGTAATAAC-AATTTGAAATAGATAGTTGTT
65 AACT-AAAA-CAATTATTTTATGACAAAACAAAAGGTCATAACGAATTTGAAATAGATAATTGTT
* * * * * *
16118 TAAAT-GGCTATGATTATTTGAACTTATTGGTTAAAACTAATTTATTCTTTTAAAT-T
128 CAAATAGCCTA-AATTATTTGAACTTATTTGAT-AAAC-AATTTATTTTTTTAAATCT
* * * * *** * *
16174 AGTTACTTATTAATTTTTGAAATATTACTAAAGTAGTATTATTTTATTTTTGGATAAACTTTTAT
1 A-ATGCTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTA-TTTCAAATAAGCTTGTAT
* * ** * *
16239 GAACTAAAACAATTTTTTTATGACAAAACAAATGGGTCATAA-TTATTTTAAATAAATAATTGTT
64 GAACTAAAACAATTATTTTATGACAAAACAAA-AGGTCATAACGAATTTGAAATAGATAATTGTT
* * * *
16303 CAAATAGCCGT-AATTATTTCAAAAACTTGTTCGGTAAACAAATTTATTATTTTTAAATCT
128 CAAATAGCC-TAAATTATTT---GAACTTATTTGATAAAC-AATTTATT-TTTTTAAATCT
* * *
16363 CATGATTATTAATTTTTTGAAA-ATTAATAAATTAGTATTATTTTCTTTCAAATAAGCTTGTATT
1 AATGCTTATTAA-TTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTA-T
* * ** * * * * * *
16427 AAACTGAAAGCAATTATTACACGACTAAAGAAAAGGTCATAATG-ATTTGAAATTGATAATTATT
64 GAACT-AAAACAATTATTTTATGACAAAACAAAAGGTCATAACGAATTTGAAATAGATAATTGTT
* * * * * * * *
16491 CTAATAGTCTTAACTATTTAAAC-TAGTTTGGTAAACGCATTTA-TTTTTTGAATC-
128 CAAATAGCCTAAATTATTTGAACTTA-TTTGATAAAC-AATTTATTTTTTTAAATCT
* * *
16545 --T-CTTATTAATTTTTGAAATATTATTAAATTAGTAATATTTT-TATCTAAATAAGCTTGTATG
1 AATGCTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTC-AAATAAGCTTGTATG
* * * * * * * * *
16606 ATC-AGAAATAATTATTTTATGA-GAAAC-AAAGATCAAAAC-AATTTGAGATTGATATTTATTC
65 AACTA-AAACAATTATTTTATGACAAAACAAAAGGTCATAACGAATTTGAAATAGATAATTGTTC
* **
16667 AAATAGCC-ATAATTATTTGAACTGATTTAGA-AAACAATTTTAGTTTTTAAAAATCT
129 AAATAGCCTA-AATTATTTGAACTTATTT-GATAAACAA-TTTA-TTTTTTTAAATCT
** * * * * *
16723 --TGCTTATTAATTTTCAAAATATTAATAAAGTAGTATTATTTTATTTCAGATAAGTTTTTATAA
1 AATGCTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGA
16786 ACTAAAACAATTATTTTATGACAAAACAAAAGGTCATAACGAATTT-AAATAGATAATTGTTCAA
66 ACTAAAACAATTATTTTATGACAAAACAAAAGGTCATAACGAATTTGAAATAGATAATTGTTCAA
** * * *
16850 ATAATC-AAATCTATTTTAATTTATTTGATAAATAGATTTATTTTTTTAAATCT
131 ATAGCCTAAAT-TATTTGAACTTATTTGATAAACA-ATTTATTTTTTTAAATCT
* * *
16903 AATGCTTATTAATTTTTTG-AATGTTAATAAATTAGCATTAATTTA-TTCTAAATAAGCTTGTAT
1 AATGCTTATTAA-TTTTTGAAATATTAATAAATTAGTATTATTTTATTTC-AAATAAGCTTGTAT
* * * * * * * * * * *
16966 GAATTGAAATAATTGTTTTGTGACTAAACAAAAGGTCAAAATG-ATATGAAATAGATAATTATCC
64 GAACTAAAACAATTATTTTATGACAAAACAAAAGGTCATAACGAATTTGAAATAGATAATTGTTC
* * * * * **
17030 TAATAGTCTTAACTATTTAAAC-TAGTTTGGCAAACACATTTA-TTTTTTAAATC-
129 AAATAGCCTAAATTATTTGAACTTA-TTTGATAAACA-ATTTATTTTTTTAAATCT
* * * * * *
17083 --T-CTTACTAATTTTT-AGAATATTATTAAATTAGTATTACTTTAATAT-GAATAAGCTTATAT
1 AATGCTTATTAATTTTTGA-AATATTAATAAATTAGTATTA-TTTTATTTCAAATAAGCTTGTAT
* * * * * * *
17143 GAA-AAGAAACAATTCTTTTATGACAAAA-TAAAGATCGTAAC-AATTTGATATAAATAATTGTT
64 GAACTA-AAACAATTATTTTATGACAAAACAAAAGGTCATAACGAATTTGAAATAGATAATTGTT
*
17205 CTAATAG
128 CAAATAG
17212 TTATGACTAT
Statistics
Matches: 809, Mismatches: 177, Indels: 111
0.74 0.16 0.10
Matches are distributed among these distances:
174 1 0.00
175 55 0.07
176 41 0.05
177 78 0.10
178 20 0.02
179 105 0.13
180 25 0.03
181 68 0.08
182 123 0.15
183 51 0.06
184 39 0.05
185 56 0.07
186 3 0.00
187 26 0.03
188 88 0.11
189 30 0.04
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (182 bp):
AATGCTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGA
ACTAAAACAATTATTTTATGACAAAACAAAAGGTCATAACGAATTTGAAATAGATAATTGTTCAA
ATAGCCTAAATTATTTGAACTTATTTGATAAACAATTTATTTTTTTAAATCT
Found at i:17048 original size:538 final size:545
Alignment explanation
Indices: 16179--17190 Score: 1351
Period size: 538 Copynumber: 1.9 Consensus size: 545
16169 AAATTAGTTA
** * ** *
16179 CTTATTAATTTTTGAAATATTACTAAAGTAGTATTATTTTATTTTTGGATAAACTTTTATGAACT
1 CTTATTAATTTTCAAAATATTAATAAAGTAGTATTATTTTATTTTCAGATAAACTTTTATAAACT
* * ** *
16244 AAAACAATTTTTTTATGACAAAACAAATGGGTCATAATTATTTTAAATAAATAATTGTTCAAATA
66 AAAACAATTATTTTATGACAAAACAAATAGGTCATAACGAATTTAAATAAATAATTGTTCAAATA
* * * * *
16309 GCCGTAATTATTTCAAAAACTTGTTCGGTAAACAAATTTATTATTTTTAAATCTCATGATTATTA
131 ACCGAAATTATTT--AAAACTTATTCGATAAACAAATTTATTATTTTTAAATCTAATGATTATTA
* * *
16374 ATTTTTTGAAAATTAATAAATTAGTATTATTTTCTTTCAAATAAGCTTGTATTAAACTGAAAGCA
194 ATTTTTTGAAAATTAATAAATTAGCATTAATTTATTTCAAATAAGCTTGTATTAAACTGAAAGCA
* * * * *
16439 ATTATTACACGACTAAAGAAAAGGTCATAATGATTTGAAATTGATAATTATTCTAATAGTCTTAA
259 ATTATTACACGACTAAACAAAAGGTCAAAATGATATGAAATAGATAATTATCCTAATAGTCTTAA
* * * *
16504 CTATTTAAACTAGTTTGGTAAACGCATTTATTTTTTGAATCTCTTATTAATTTTT-GAAATATTA
324 CTATTTAAACTAGTTTGGCAAACACATTTATTTTTTAAATCTCTTACTAATTTTTAG-AATATTA
* * * * ** * *
16568 TTAAATTAGTAATATTTTTATCTAAATAAGCTTGTATGATCAGAAATAATTATTTTATGA-GAAA
388 TTAAATTAGTAATACTTTAATATAAATAAGCTTATATGAAAAGAAACAATTATTTTATGACAAAA
16632 CAAAGATCAAAACAATTTGAGATTGATATTTATTCAAATAGCCATAATTATTTGAACTGATTTAG
453 CAAAGATCAAAACAATTTGAGATTGATATTTATTCAAATAGCCATAATTATTTGAACTGATTTAG
16697 AAAACAATTTTAGTTTTTAAAAATCTTG
518 AAAACAATTTTAGTTTTTAAAAATCTTG
**
16725 CTTATTAATTTTCAAAATATTAATAAAGTAGTATTATTTTA-TTTCAGATAAGTTTTTATAAACT
1 CTTATTAATTTTCAAAATATTAATAAAGTAGTATTATTTTATTTTCAGATAAACTTTTATAAACT
*
16789 AAAACAATTATTTTATGACAAAACAAA-AGGTCATAACGAATTTAAATAGATAATTGTTCAAATA
66 AAAACAATTATTTTATGACAAAACAAATAGGTCATAACGAATTTAAATAAATAATTGTTCAAATA
* * * * * * *
16853 ATC-AAATCTATTT-TAATTTATTTGATAAATAGATTTATT-TTTTTAAATCTAATGCTTATTAA
131 ACCGAAAT-TATTTAAAACTTATTCGATAAACAAATTTATTATTTTTAAATCTAATGATTATTAA
** * * *
16915 TTTTTTGAATGTTAATAAATTAGCATTAATTTA-TTCTAAATAAGCTTGTA-TGAATTGAAA-TA
195 TTTTTTGAAAATTAATAAATTAGCATTAATTTATTTC-AAATAAGCTTGTATTAAACTGAAAGCA
* ****
16977 ATTGTTTTGTGACTAAACAAAAGGTCAAAATGATATGAAATAGATAATTATCCTAATAGTCTTAA
259 ATTATTACACGACTAAACAAAAGGTCAAAATGATATGAAATAGATAATTATCCTAATAGTCTTAA
17042 CTATTTAAACTAGTTTGGCAAACACATTTATTTTTTAAATCTCTTACTAATTTTTAGAATATTAT
324 CTATTTAAACTAGTTTGGCAAACACATTTATTTTTTAAATCTCTTACTAATTTTTAGAATATTAT
* * * *
17107 TAAATTAGTATTACTTTAATATGAATAAGCTTATATGAAAAGAAACAATTCTTTTATGACAAAAT
389 TAAATTAGTAATACTTTAATATAAATAAGCTTATATGAAAAGAAACAATTATTTTATGACAAAAC
**
17172 AAAGATCGTAACAATTTGA
454 AAAGATCAAAACAATTTGA
17191 TATAAATAAT
Statistics
Matches: 400, Mismatches: 62, Indels: 15
0.84 0.13 0.03
Matches are distributed among these distances:
538 164 0.41
539 32 0.08
540 62 0.16
541 19 0.05
543 3 0.01
544 38 0.09
545 44 0.11
546 38 0.09
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (545 bp):
CTTATTAATTTTCAAAATATTAATAAAGTAGTATTATTTTATTTTCAGATAAACTTTTATAAACT
AAAACAATTATTTTATGACAAAACAAATAGGTCATAACGAATTTAAATAAATAATTGTTCAAATA
ACCGAAATTATTTAAAACTTATTCGATAAACAAATTTATTATTTTTAAATCTAATGATTATTAAT
TTTTTGAAAATTAATAAATTAGCATTAATTTATTTCAAATAAGCTTGTATTAAACTGAAAGCAAT
TATTACACGACTAAACAAAAGGTCAAAATGATATGAAATAGATAATTATCCTAATAGTCTTAACT
ATTTAAACTAGTTTGGCAAACACATTTATTTTTTAAATCTCTTACTAATTTTTAGAATATTATTA
AATTAGTAATACTTTAATATAAATAAGCTTATATGAAAAGAAACAATTATTTTATGACAAAACAA
AGATCAAAACAATTTGAGATTGATATTTATTCAAATAGCCATAATTATTTGAACTGATTTAGAAA
ACAATTTTAGTTTTTAAAAATCTTG
Found at i:17535 original size:16 final size:17
Alignment explanation
Indices: 17514--17546 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
17504 TTATATTTAT
17514 GTATTA-AATTTTAATA
1 GTATTATAATTTTAATA
*
17530 GTATTATATTTTTAATA
1 GTATTATAATTTTAATA
17547 ACTATTATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (17 bp):
GTATTATAATTTTAATA
Found at i:17620 original size:15 final size:14
Alignment explanation
Indices: 17602--17643 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
17592 AATTTAATAT
17602 TATATTAATTAATTC
1 TATATTAA-TAATTC
17617 TATATTAATAATT-
1 TATATTAATAATTC
17630 TGATATATAATAAT
1 T-ATAT-TAATAAT
17644 ATAATTATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.04
14 9 0.36
15 15 0.60
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (14 bp):
TATATTAATAATTC
Found at i:17731 original size:15 final size:14
Alignment explanation
Indices: 17710--17804 Score: 60
Period size: 13 Copynumber: 7.0 Consensus size: 14
17700 TATTCTAAGT
17710 ATTATATAATTATA
1 ATTATATAATTATA
17724 ATTTATATAATGT-T-
1 A-TTATATAAT-TATA
*
17738 ATTATATTATT-TA
1 ATTATATAATTATA
* *
17751 A-AATATATTTATA
1 ATTATATAATTATA
* *
17764 ATTTATTTATTTATA
1 A-TTATATAATTATA
17779 A-TATATAATTAT-
1 ATTATATAATTATA
17791 A-TATATAGATTATA
1 ATTATATA-ATTATA
17805 TATATTATAG
Statistics
Matches: 65, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
12 15 0.23
13 26 0.40
14 2 0.03
15 21 0.32
16 1 0.02
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (14 bp):
ATTATATAATTATA
Found at i:17882 original size:12 final size:13
Alignment explanation
Indices: 17862--17916 Score: 51
Period size: 14 Copynumber: 4.2 Consensus size: 13
17852 TTAATTACTA
17862 AATTATATATATAT
1 AATTATATA-ATAT
17876 AATTATATAATTATT
1 AATTATATAA-TA-T
* *
17891 AATAATAT-ATTT
1 AATTATATAATAT
17903 AATT-TATAATAT
1 AATTATATAATAT
17915 AA
1 AA
17917 AGAATTTATA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
11 3 0.09
12 9 0.26
13 2 0.06
14 12 0.35
15 8 0.24
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
AATTATATAATAT
Found at i:18364 original size:23 final size:23
Alignment explanation
Indices: 18338--18398 Score: 65
Period size: 21 Copynumber: 2.7 Consensus size: 23
18328 ATTTATTTAA
18338 TATTATAATTAATATTTTATC-TT
1 TATTATAA-TAATATTTTATCATT
*
18361 TATTA-AATAATAATTTATCATT
1 TATTATAATAATATTTTATCATT
*
18383 TA-AATAACTAATATTT
1 TATTATAA-TAATATTT
18399 AAATGTTCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
21 12 0.38
22 8 0.25
23 12 0.38
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (23 bp):
TATTATAATAATATTTTATCATT
Found at i:18566 original size:29 final size:31
Alignment explanation
Indices: 18534--18645 Score: 80
Period size: 29 Copynumber: 3.8 Consensus size: 31
18524 TAATCCTTAT
*
18534 TAAT-TATAATTA-ATTATTAATATTTATTA
1 TAATATATAATTAGATTATTAATATATATTA
* ** *
18563 TAATGTA-AA-TAGAAAATTAATATATGTTA
1 TAATATATAATTAGATTATTAATATATATTA
*
18592 -AAT-TTTAAATTAGATTATTAA-ATATATTAA
1 TAATATAT-AATTAGATTATTAATATATATT-A
18622 TAATATGATAATTA-A-TATTAATAT
1 TAATAT-ATAATTAGATTATTAATAT
18646 CAATTTATAT
Statistics
Matches: 64, Mismatches: 9, Indels: 18
0.70 0.10 0.20
Matches are distributed among these distances:
27 1 0.02
28 5 0.08
29 27 0.42
30 18 0.28
31 6 0.09
32 6 0.09
33 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.46
Consensus pattern (31 bp):
TAATATATAATTAGATTATTAATATATATTA
Found at i:18796 original size:13 final size:13
Alignment explanation
Indices: 18766--18846 Score: 58
Period size: 14 Copynumber: 5.8 Consensus size: 13
18756 AATGTAGACA
*
18766 ATTATTAATATGAT
1 ATTATT-ATATAAT
*
18780 ATTATTATTTAAT
1 ATTATTATATAAT
18793 ATTATTAATATAAT
1 ATTATT-ATATAAT
*
18807 A-TATTATGAT-TT
1 ATTATTAT-ATAAT
18819 ATTAATAATATATATAT
1 ATT-AT--TATATA-AT
18836 ATTATTATATA
1 ATTATTATATA
18847 TTAAAAAATA
Statistics
Matches: 54, Mismatches: 5, Indels: 16
0.72 0.07 0.21
Matches are distributed among these distances:
12 4 0.07
13 18 0.33
14 21 0.39
15 2 0.04
16 5 0.09
17 4 0.07
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (13 bp):
ATTATTATATAAT
Found at i:18797 original size:10 final size:9
Alignment explanation
Indices: 18766--18849 Score: 52
Period size: 10 Copynumber: 9.4 Consensus size: 9
18756 AATGTAGACA
18766 ATTATTAAT
1 ATTATTAAT
* *
18775 ATGA-TATT
1 ATTATTAAT
18783 ATTATTTAAT
1 ATTA-TTAAT
18793 ATTATTAAT
1 ATTATTAAT
*
18802 A-TAAT-AT
1 ATTATTAAT
*
18809 ATTA-TGAT
1 ATTATTAAT
18817 -TTATTAAT
1 ATTATTAAT
*
18825 AATATATATAT
1 ATTAT-TA-AT
18836 ATTATTATAT
1 ATTATTA-AT
18846 ATTA
1 ATTA
18850 AAAAATATAG
Statistics
Matches: 59, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
7 7 0.12
8 16 0.27
9 12 0.20
10 18 0.31
11 6 0.10
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (9 bp):
ATTATTAAT
Found at i:18843 original size:23 final size:22
Alignment explanation
Indices: 18792--18843 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
18782 TATTATTTAA
18792 TATTATTAATATAATATATTAT
1 TATTATTAATATAATATATTAT
*
18814 GATTTATTAATA-ATATATATATAT
1 TA-TTATTAATATA-ATATAT-TAT
18838 TATTAT
1 TATTAT
18844 ATATTAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 2 0.08
23 19 0.76
24 4 0.16
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
TATTATTAATATAATATATTAT
Found at i:18864 original size:30 final size:27
Alignment explanation
Indices: 18799--18864 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
18789 TAATATTATT
* *
18799 AATATA-ATATATTATGATTTATTAAT
1 AATATATATATATTATGATATATTAAA
*
18825 AATATATATATATTATTATATATTAAAA
1 AATATATATATATTATGATATATT-AAA
*
18853 AATATAGATATA
1 AATATATATATA
18865 ATAATAATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 6 0.18
27 15 0.44
28 13 0.38
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (27 bp):
AATATATATATATTATGATATATTAAA
Found at i:18959 original size:27 final size:28
Alignment explanation
Indices: 18929--19021 Score: 75
Period size: 29 Copynumber: 3.2 Consensus size: 28
18919 TTAAATTATA
18929 AAATAAATTTAT-TAATAATTATTTAAT
1 AAATAAATTTATATAATAATTATTTAAT
*
18956 AAATCACATATTTATATGATAATTAATATTAAT
1 AAAT-A-A-ATTTATATAATAATT-AT-TTAAT
* * *
18989 -AATCAATTTATATATTAATATACTT-AT
1 AAATAAATTTATATAATAAT-TATTTAAT
19016 AAATAA
1 AAATAA
19022 TAAATTATTA
Statistics
Matches: 52, Mismatches: 6, Indels: 15
0.71 0.08 0.21
Matches are distributed among these distances:
27 6 0.12
28 7 0.13
29 14 0.27
30 8 0.15
31 7 0.13
32 5 0.10
33 5 0.10
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (28 bp):
AAATAAATTTATATAATAATTATTTAAT
Found at i:19155 original size:17 final size:16
Alignment explanation
Indices: 19106--19168 Score: 60
Period size: 16 Copynumber: 3.9 Consensus size: 16
19096 TAAATATTTA
* *
19106 ATTAATT-AAATCATT
1 ATTAATTAAAATGAAT
19121 ATTAATT--AATGATTAT
1 ATTAATTAAAATGA--AT
19137 ATTAATTTAAAATGAAT
1 ATTAA-TTAAAATGAAT
19154 ATTAATTAAAATGAA
1 ATTAATTAAAATGAA
19169 CAATTTTGTA
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
14 4 0.10
15 7 0.17
16 16 0.39
17 9 0.22
19 5 0.12
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.43
Consensus pattern (16 bp):
ATTAATTAAAATGAAT
Found at i:19318 original size:15 final size:15
Alignment explanation
Indices: 19276--19323 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
19266 TTAAAAATAT
19276 TAAATAAT-ATA-TA
1 TAAATAATCATATTA
19289 T-AATAATTTCA-ATTA
1 TAAATAA--TCATATTA
19304 TAAATAATCATATTA
1 TAAATAATCATATTA
19319 TAAAT
1 TAAAT
19324 TATATTTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
12 5 0.17
13 1 0.03
14 5 0.17
15 13 0.45
16 5 0.17
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (15 bp):
TAAATAATCATATTA
Found at i:19369 original size:27 final size:27
Alignment explanation
Indices: 19302--19389 Score: 92
Period size: 26 Copynumber: 3.3 Consensus size: 27
19292 TAATTTCAAT
*
19302 TATA-AATAATCATA-TTATAAATTATA
1 TATATAATAATCA-AGTTATTAATTATA
*
19328 T-TTTAATAATCAAGTTATTAATTATA
1 TATATAATAATCAAGTTATTAATTATA
* *
19354 TATATAATTATCAAGTTATTATACTATTA
1 TATATAATAATCAAGTTATTA-ATTA-TA
19383 TATATAA
1 TATATAA
19390 AATAATTTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.04
26 21 0.40
27 17 0.33
28 3 0.06
29 9 0.17
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (27 bp):
TATATAATAATCAAGTTATTAATTATA
Found at i:19479 original size:25 final size:24
Alignment explanation
Indices: 19444--19515 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 24
19434 ATTTATGATA
*
19444 AATATTATATTAAATAATTTAATT
1 AATATAATATTAAATAATTTAATT
19468 AATATAATTATTAAATATATTATAATT
1 AATATAA-TATTAAATA-ATT-TAATT
*
19495 ATTATAA-ATTATAATAATTTA
1 AATATAATATTA-AATAATTTA
19516 CATTTACTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
24 8 0.19
25 16 0.38
26 7 0.17
27 11 0.26
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (24 bp):
AATATAATATTAAATAATTTAATT
Found at i:19499 original size:9 final size:9
Alignment explanation
Indices: 19451--19513 Score: 60
Period size: 9 Copynumber: 7.1 Consensus size: 9
19441 ATAAATATTA
19451 TATTA-AAT
1 TATTATAAT
*
19459 AATT-TAAT
1 TATTATAAT
*
19467 TAATATAAT
1 TATTATAAT
19476 TATTA-AAT
1 TATTATAAT
19484 ATATTATAAT
1 -TATTATAAT
19494 TATTATAAAT
1 TATTAT-AAT
*
19504 TATAATAAT
1 TATTATAAT
19513 T
1 T
19514 TACATTTACT
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
8 11 0.24
9 23 0.51
10 11 0.24
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (9 bp):
TATTATAAT
Found at i:20345 original size:110 final size:111
Alignment explanation
Indices: 20124--20351 Score: 415
Period size: 110 Copynumber: 2.1 Consensus size: 111
20114 AAATCATATT
20124 TATTAA-CATAGTTTTAAGGATTAATACTTTATTAATTACAACTTTATAACTATATTATTATAAT
1 TATTAATCATAGTTTTAAGGATTAATACTTTATTAATTACAACTTTATAACTATATTA-TATAAT
20188 ATTAATATTATATTAATATCAATTATTAAATAAATATGGTTTTGTAA
65 ATTAATATTATATTAATATCAATTATTAAATAAATATGGTTTTGTAA
20235 TATTAATCATAGTTTTAAGGATTAATACTTTATTAATTACAACTTTATAACTATATTA-ATAATA
1 TATTAATCATAGTTTTAAGGATTAATACTTTATTAATTACAACTTTATAACTATATTATATAATA
* *
20299 TTGATATTATATTGATATCAATTATTAAATAAATATGGTTTTGTAA
66 TTAATATTATATTAATATCAATTATTAAATAAATATGGTTTTGTAA
20345 TATTAAT
1 TATTAAT
20352 TAATAATAAA
Statistics
Matches: 114, Mismatches: 2, Indels: 3
0.96 0.02 0.03
Matches are distributed among these distances:
110 57 0.50
111 6 0.05
112 51 0.45
ACGTcount: A:0.42, C:0.05, G:0.06, T:0.47
Consensus pattern (111 bp):
TATTAATCATAGTTTTAAGGATTAATACTTTATTAATTACAACTTTATAACTATATTATATAATA
TTAATATTATATTAATATCAATTATTAAATAAATATGGTTTTGTAA
Found at i:20392 original size:110 final size:111
Alignment explanation
Indices: 20142--20393 Score: 321
Period size: 110 Copynumber: 2.3 Consensus size: 111
20132 TAGTTTTAAG
* * *
20142 GATTAATACTTTATTAATTACAACTTTATAACTATATTATTATAATATTAATATTATATTAATAT
1 GATTAATACTTTATCAAATACAAATTTATAACTATATTA-TATAATATTAATATTATATTAATAT
* * ** *
20207 CAATTATTAAATAAATATGGTTTTGTAATATTAATCATAGTTTTAAG
65 CAATTATTAAATAAATATGGTTTTGTAATATTAATAATAGATAAAAC
* * * * *
20254 GATTAATACTTTATTAATTACAACTTTATAACTATATTA-ATAATATTGATATTATATTGATATC
1 GATTAATACTTTATCAAATACAAATTTATAACTATATTATATAATATTAATATTATATTAATATC
20318 AATTATTAAATAAATATGGTTTTGTAATATTAATTAATA-ATAAAAC
66 AATTATTAAATAAATATGGTTTTGTAATATTAA-TAATAGATAAAAC
* *
20364 TATTAATTATTTTATCAAATA-AAATTTATA
1 GATTAA-TACTTTATCAAATACAAATTTATA
20394 TTATTTATAG
Statistics
Matches: 126, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
110 72 0.57
111 15 0.12
112 39 0.31
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (111 bp):
GATTAATACTTTATCAAATACAAATTTATAACTATATTATATAATATTAATATTATATTAATATC
AATTATTAAATAAATATGGTTTTGTAATATTAATAATAGATAAAAC
Found at i:20532 original size:21 final size:22
Alignment explanation
Indices: 20494--20548 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 22
20484 TTCATTGATG
*
20494 ATTTAATTAATAAT-TTTACA-A
1 ATTTAA-TAATTATATTTACATA
*
20515 ATTTAATAATTATATTTATATA
1 ATTTAATAATTATATTTACATA
20537 A-TTAAT-ATTATA
1 ATTTAATAATTATA
20549 ATATGAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
20 12 0.40
21 16 0.53
22 2 0.07
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (22 bp):
ATTTAATAATTATATTTACATA
Found at i:20794 original size:28 final size:28
Alignment explanation
Indices: 20734--20812 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 28
20724 TTCAATTAAT
*
20734 TAATT-TATTAT-TAATAATATAATAATTG
1 TAATTATATTATATTATAATAT--TAATTG
*
20762 -GATTATATTATATTATAATATTAATTG
1 TAATTATATTATATTATAATATTAATTG
* *
20789 TAATTACATTATAATATAATATTA
1 TAATTATATTATATTATAATATTA
20813 TAATATTATA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
27 9 0.21
28 26 0.60
29 8 0.19
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (28 bp):
TAATTATATTATATTATAATATTAATTG
Found at i:21077 original size:13 final size:13
Alignment explanation
Indices: 21055--21094 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
21045 ACTGGTTAAT
*
21055 ATTATTTAATTTA
1 ATTATATAATTTA
* *
21068 TTTATATAATTAA
1 ATTATATAATTTA
21081 ATTATATAATTTA
1 ATTATATAATTTA
21094 A
1 A
21095 ATTTAGTTTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
ATTATATAATTTA
Found at i:21321 original size:28 final size:27
Alignment explanation
Indices: 21281--21335 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
21271 TTTGAACATT
21281 TAATTAGTAAATATAATTAATTAT-TTAA
1 TAATTAGTAAATA-AATT-ATTATATTAA
* *
21309 TAATTATTCAATAAATTATTATATTAA
1 TAATTAGTAAATAAATTATTATATTAA
21336 ATTATATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 5 0.21
27 8 0.33
28 11 0.46
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (27 bp):
TAATTAGTAAATAAATTATTATATTAA
Found at i:21338 original size:13 final size:14
Alignment explanation
Indices: 21320--21362 Score: 56
Period size: 13 Copynumber: 3.2 Consensus size: 14
21310 AATTATTCAA
21320 TAAATTATTATA-T
1 TAAATTATTATATT
21333 TAAATTA-TATATT
1 TAAATTATTATATT
21346 TATAATTATTA-ATT
1 TA-AATTATTATATT
21360 TAA
1 TAA
21363 TAATAATATT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 4 0.15
13 11 0.41
14 10 0.37
15 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TAAATTATTATATT
Found at i:21409 original size:30 final size:28
Alignment explanation
Indices: 21292--21412 Score: 85
Period size: 27 Copynumber: 4.4 Consensus size: 28
21282 AATTAGTAAA
*
21292 TATAATTAATT-ATTTAATAAT--TATT
1 TATAATTATTTAATTTAATAATAATATT
* * *
21317 CAATAAATTA-TTATATTAAATTAT-ATATT
1 -TAT-AATTATTTA-ATTTAATAATAATATT
21346 TATAATTA-TTAATTTAATAATAATATT
1 TATAATTATTTAATTTAATAATAATATT
* *
21373 TTTAATTATTTAATATTACATATTAATGA-T
1 TATAATTATTTAAT-TTA-ATAATAAT-ATT
21403 TATAATTATT
1 TATAATTATT
21413 AAAAAGTAGA
Statistics
Matches: 77, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
26 12 0.16
27 25 0.32
28 15 0.19
29 7 0.09
30 17 0.22
31 1 0.01
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.53
Consensus pattern (28 bp):
TATAATTATTTAATTTAATAATAATATT
Found at i:21724 original size:18 final size:19
Alignment explanation
Indices: 21706--21760 Score: 62
Period size: 18 Copynumber: 3.0 Consensus size: 19
21696 AAATATTTAT
21706 ATTAATTTATATTAATATA
1 ATTAATTTATATTAATATA
* *
21725 AATAATTAAT-TTAAT-TA
1 ATTAATTTATATTAATATA
21742 ATTTAATTTA-ATTAATATA
1 A-TTAATTTATATTAATATA
21761 TTATCAATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
17 3 0.10
18 16 0.55
19 10 0.34
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTAATTTATATTAATATA
Found at i:22040 original size:14 final size:15
Alignment explanation
Indices: 22020--22057 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
22010 TAGTATGATA
22020 ATAATTAATTATTAT
1 ATAATTAATTATTAT
*
22035 -TAATTAA-TATTTT
1 ATAATTAATTATTAT
22048 ATAATTAATT
1 ATAATTAATT
22058 TATAATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
13 5 0.25
14 14 0.70
15 1 0.05
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATAATTAATTATTAT
Found at i:22049 original size:18 final size:19
Alignment explanation
Indices: 22018--22078 Score: 61
Period size: 18 Copynumber: 3.1 Consensus size: 19
22008 TATAGTATGA
22018 TAATAATTAATTATTATTAAT
1 TAATAATT--TTATTATTAAT
*
22039 TAAT-ATTTTATAATTAAT
1 TAATAATTTTATTATTAAT
* *
22057 TTATAATTTATATTATAAAT
1 TAATAATTT-TATTATTAAT
22077 TA
1 TA
22079 TTAAATATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
18 13 0.39
19 4 0.12
20 12 0.36
21 4 0.12
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TAATAATTTTATTATTAAT
Found at i:22089 original size:26 final size:29
Alignment explanation
Indices: 22058--22140 Score: 82
Period size: 31 Copynumber: 2.8 Consensus size: 29
22048 ATAATTAATT
22058 TATAAT-TTATATTATAAATTATT-A-AA
1 TATAATATTATATTATAAATTATTAATAA
* *
22084 TATAATATAATATATTATGATTTATTAATAA
1 TATAATAT--TATATTATAAATTATTAATAA
*
22115 TATAATATTAATATTATTATATTATT
1 TATAATATT-ATATTA-TAAATTATT
22141 TTAAACTAGT
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
26 6 0.13
27 1 0.02
29 15 0.33
30 7 0.16
31 16 0.36
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (29 bp):
TATAATATTATATTATAAATTATTAATAA
Found at i:22115 original size:52 final size:51
Alignment explanation
Indices: 22035--22133 Score: 119
Period size: 52 Copynumber: 1.9 Consensus size: 51
22025 TAATTATTAT
* * *
22035 TAATTAATATTTTATAATTAATTTATAAT-TTATATTATAAATTATTAAATA
1 TAATTAATATATTATAATTAATTAATAATATAATATTA-AAATTATTAAATA
* * *
22086 TAATATAATATATTATGATTTATTAATAATATAATATTAATATTATTA
1 TAAT-TAATATATTATAATTAATTAATAATATAATATTAAAATTATTA
22134 TATTATTTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
51 4 0.10
52 29 0.73
53 7 0.17
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (51 bp):
TAATTAATATATTATAATTAATTAATAATATAATATTAAAATTATTAAATA
Found at i:23153 original size:19 final size:20
Alignment explanation
Indices: 23116--23176 Score: 63
Period size: 19 Copynumber: 3.0 Consensus size: 20
23106 TATTTGTGTT
23116 AATTACTTATTATTAATTTA
1 AATTACTTATTATTAATTTA
*
23136 AATT-CTTATTATATATTTATA
1 AATTACTTATTAT-TAATT-TA
23157 TTAATTACTTATT-TTAATTT
1 --AATTACTTATTATTAATTT
23177 TTAATAACAA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 8 0.24
20 8 0.24
21 3 0.09
22 4 0.12
23 5 0.15
24 6 0.18
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (20 bp):
AATTACTTATTATTAATTTA
Found at i:23167 original size:24 final size:23
Alignment explanation
Indices: 23105--23177 Score: 66
Period size: 23 Copynumber: 3.3 Consensus size: 23
23095 ATTAAAACTA
*
23105 ATATTTGTGTTAATTACTTATTAT
1 ATATTT-TATTAATTACTTATTAT
*
23129 -TAATTTA--AATT-CTTATTAT
1 ATATTTTATTAATTACTTATTAT
*
23148 ATATTTATATTAATTACTTATTTT
1 ATATTT-TATTAATTACTTATTAT
23172 A-ATTTT
1 ATATTTT
23178 TAATAACAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
19 8 0.20
20 8 0.20
21 2 0.05
22 2 0.05
23 12 0.30
24 8 0.20
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.60
Consensus pattern (23 bp):
ATATTTTATTAATTACTTATTAT
Found at i:23876 original size:17 final size:17
Alignment explanation
Indices: 23835--23876 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
23825 AACAATTATC
23835 AATATT-ATTTAATATT
1 AATATTAATTTAATATT
*
23851 AATACTAATTTAATATT
1 AATATTAATTTAATATT
*
23868 GATATTAAT
1 AATATTAAT
23877 ATGAAGCTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (17 bp):
AATATTAATTTAATATT
Found at i:23973 original size:13 final size:13
Alignment explanation
Indices: 23957--23989 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
23947 ATTAACAAGG
23957 ATTATTATATTAA
1 ATTATTATATTAA
*
23970 ATTATTATATTGA
1 ATTATTATATTAA
23983 ATTATTA
1 ATTATTA
23990 AAAGTATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (13 bp):
ATTATTATATTAA
Found at i:24890 original size:10 final size:11
Alignment explanation
Indices: 24874--24902 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
24864 CATACCCTAT
24874 GTATATATTTA
1 GTATATATTTA
24885 -TATATATTTA
1 GTATATATTTA
24895 GTATATAT
1 GTATATAT
24903 ATTTTTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (11 bp):
GTATATATTTA
Found at i:25434 original size:7 final size:7
Alignment explanation
Indices: 25416--25461 Score: 55
Period size: 7 Copynumber: 7.1 Consensus size: 7
25406 ATAATATGCA
25416 ATTATA-
1 ATTATAT
25422 ATTATAT
1 ATTATAT
25429 ATTATAT
1 ATTATAT
25436 ATTATAT
1 ATTATAT
25443 A--ATA-
1 ATTATAT
*
25447 ATTATTT
1 ATTATAT
25454 ATTATAT
1 ATTATAT
25461 A
1 A
25462 ATTTAATTGG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
4 1 0.03
5 3 0.09
6 8 0.24
7 22 0.65
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (7 bp):
ATTATAT
Found at i:25437 original size:25 final size:24
Alignment explanation
Indices: 25386--25461 Score: 75
Period size: 25 Copynumber: 3.1 Consensus size: 24
25376 AATAATATTT
25386 TATGAATTAT-ATTA-ATTATTATAA
1 TATGAATTATAATTATA-TATTAT-A
25410 TATGCAATTATAATTATATATTATA
1 TATG-AATTATAATTATATATTATA
* * *
25435 TATTATATAATAATTATTTATTATA
1 TATGA-ATTATAATTATATATTATA
25460 TA
1 TA
25462 ATTTAATTGG
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
24 5 0.11
25 29 0.64
26 10 0.22
27 1 0.02
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (24 bp):
TATGAATTATAATTATATATTATA
Found at i:25456 original size:18 final size:18
Alignment explanation
Indices: 25429--25463 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
25419 ATAATTATAT
25429 ATTATATATTATATAATA
1 ATTATATATTATATAATA
*
25447 ATTATTTATTATATAAT
1 ATTATATATTATATAAT
25464 TTAATTGGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTATATATTATATAATA
Found at i:25765 original size:13 final size:13
Alignment explanation
Indices: 25747--25771 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25737 ATACTCTATT
25747 AATAATTAGATTA
1 AATAATTAGATTA
25760 AATAATTAGATT
1 AATAATTAGATT
25772 TATTTGTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
AATAATTAGATTA
Found at i:25897 original size:13 final size:13
Alignment explanation
Indices: 25879--25903 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25869 TATATTAGTT
25879 TTAATATTTAAAA
1 TTAATATTTAAAA
25892 TTAATATTTAAA
1 TTAATATTTAAA
25904 TTTTAAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TTAATATTTAAAA
Found at i:25898 original size:27 final size:28
Alignment explanation
Indices: 25850--25916 Score: 66
Period size: 28 Copynumber: 2.4 Consensus size: 28
25840 TTTAAACAAA
*
25850 TTAATATATTAAAACAATATATATT-AGTT
1 TTAATAT-TTAAAACAATATAT-TTAAATT
**
25879 TTAATATTTAAAATTA-ATATTTAAATT
1 TTAATATTTAAAACAATATATTTAAATT
25906 TTAAATATTTA
1 TT-AATATTTA
25917 TATCATATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
26 2 0.06
27 9 0.27
28 15 0.45
29 7 0.21
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (28 bp):
TTAATATTTAAAACAATATATTTAAATT
Found at i:26292 original size:41 final size:38
Alignment explanation
Indices: 26234--26309 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 38
26224 CTTAATCATA
* * *
26234 ATATAATTTATCTAATAATTATGGTTTAATTAATAAAAT
1 ATATAATTTATCGAATAATT-GGGTTTAATAAATAAAAT
26273 ATATAATTGTTATCGAATAATTGGGTTTAATAAATAA
1 ATATAA-T-TTATCGAATAATTGGGTTTAATAAATAA
26310 GCATATTGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
39 6 0.19
40 14 0.44
41 12 0.38
ACGTcount: A:0.45, C:0.03, G:0.09, T:0.43
Consensus pattern (38 bp):
ATATAATTTATCGAATAATTGGGTTTAATAAATAAAAT
Found at i:26976 original size:180 final size:179
Alignment explanation
Indices: 26721--27133 Score: 464
Period size: 180 Copynumber: 2.3 Consensus size: 179
26711 GATCGATAAT
* * * *
26721 AAACAATTGTTTTACAACAAAATAAAATGTCA-AACAATTTGAAATAAATAATCTTTCAAACGGA
1 AAACAATTGTTTTATAACAAAACAAAA-GTCATAACGATTTGAAATAAATAATCTTTCAAACGAA
** * **
26785 CATGGCTATTTGAATTGGTTTGATAAACT-AATTAATTTTTAAAAT-TTTCAACTTATTAATTTT
65 CATAACTATTTGAACTCATTTGATAAA-TAAATTAATTTTTAAAATCTTT-AACTTATTAATTTT
* * * *
26848 GAGAATGTTAA-TATATTAGTATTATTTTATTCCAAA-AAAATTGTATGAATAG
128 G-GAATATTAATTA-ATTAGAATTATTATATTCCAAATAAAATTATATGAATAG
*
26900 AAACAATTGTTTTATAACAAAACAAAAGATCATAACGATTTGAAATAAATAAT-TGTTCAAA-TA
1 AAACAATTGTTTTATAACAAAACAAAAG-TCATAACGATTTGAAATAAATAATCT-TTCAAACGA
* * *
26963 ATCATAACTATTTGAACTCATTTGATAAATAAATTTATTTTTTAAATCTTTTACTTATTAATTTT
64 A-CATAACTATTTGAACTCATTTGATAAATAAATTAATTTTTAAAATCTTTAACTTATTAATTTT
** *
27028 GGAATATTAATTAATTAGAATTATTATATTCCAAATAAGCTTATTTGAATAG
128 GGAATATTAATTAATTAGAATTATTATATTCCAAATAAAATTATATGAATAG
* * * *
27080 AAACAATTAG-TTTATGACAAAACAAATGGTCATAATGATTTGAAATAGATAATC
1 AAACAATT-GTTTTATAACAAAACAAA-AGTCATAACGATTTGAAATAAATAATC
27134 ATAACTATTT
Statistics
Matches: 199, Mismatches: 24, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
178 1 0.01
179 59 0.30
180 134 0.67
181 5 0.03
ACGTcount: A:0.44, C:0.08, G:0.09, T:0.39
Consensus pattern (179 bp):
AAACAATTGTTTTATAACAAAACAAAAGTCATAACGATTTGAAATAAATAATCTTTCAAACGAAC
ATAACTATTTGAACTCATTTGATAAATAAATTAATTTTTAAAATCTTTAACTTATTAATTTTGGA
ATATTAATTAATTAGAATTATTATATTCCAAATAAAATTATATGAATAG
Found at i:27264 original size:168 final size:168
Alignment explanation
Indices: 26960--27300 Score: 449
Period size: 168 Copynumber: 2.0 Consensus size: 168
26950 AATTGTTCAA
* *
26960 ATAATCATAACTATTTGAACTCATTTGATAAATAAATTTATTTTTTAAATCTTTTACTTATTAAT
1 ATAATCATAACTATTTGAACTCATTTGATAAATAAATTTATTTTTTAAATATTATACTTATTAAT
* * ** *
27025 TTTGGAATATTAATTAATTAGAATTATTATATTCCAAATAAGCTTATTTGAATAGAAACAATTAG
66 TTTGGAATATTAATAAATTAGAATTATTATATTCAAAATAAGCTTACATGAACAGAAACAATTAG
27090 TTTATGACAAAAC-AAATGGTCATAATGATTTGAAATAG
131 TTTATGACAAAACAAAAT-GTCATAATGATTTGAAATAG
** **
27128 ATAATCATAACTATTTGAA-TGTGTTTAGA-AAATAGCTTTATTTTTTAAA-ATTATACTTATTA
1 ATAATCATAACTATTTGAACT-CATTT-GATAAATAAATTTATTTTTTAAATATTATACTTATTA
* * * *
27190 ATTTTTGGAATATTAATAAATTTA-TATTATTTTATTCAAAATACGCTTACATGAACAGAACCAA
64 A-TTTTGGAATATTAATAAA-TTAGAATTATTATATTCAAAATAAGCTTACATGAACAGAAACAA
* *
27254 TTATTTTATGACAAAACAAAATGTCATAATGTTTTGAAATAG
127 TTAGTTTATGACAAAACAAAATGTCATAATGATTTGAAATAG
27296 ATAAT
1 ATAAT
27301 TGTTTAGATA
Statistics
Matches: 151, Mismatches: 17, Indels: 10
0.85 0.10 0.06
Matches are distributed among these distances:
167 13 0.09
168 129 0.85
169 9 0.06
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.42
Consensus pattern (168 bp):
ATAATCATAACTATTTGAACTCATTTGATAAATAAATTTATTTTTTAAATATTATACTTATTAAT
TTTGGAATATTAATAAATTAGAATTATTATATTCAAAATAAGCTTACATGAACAGAAACAATTAG
TTTATGACAAAACAAAATGTCATAATGATTTGAAATAG
Found at i:27762 original size:21 final size:22
Alignment explanation
Indices: 27723--27763 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
27713 GTAACAAGTA
* *
27723 AAAATCATTTATATTAATTATT
1 AAAATCATTAATAATAATTATT
27745 AAAAT-ATTAATAATAATTA
1 AAAATCATTAATAATAATTA
27764 ATACTAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
AAAATCATTAATAATAATTATT
Found at i:27802 original size:24 final size:23
Alignment explanation
Indices: 27752--27804 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
27742 ATTAAAATAT
* *
27752 TAATAATAATTAATACTAATTTG
1 TAATATTAATTAATACTAATTTA
27775 TAATATTAATTGAATTA-TAATTTA
1 TAATATTAATT-AA-TACTAATTTA
27799 TAATAT
1 TAATAT
27805 AATAACATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 10 0.38
24 14 0.54
25 2 0.08
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (23 bp):
TAATATTAATTAATACTAATTTA
Found at i:27807 original size:23 final size:22
Alignment explanation
Indices: 27752--27807 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 22
27742 ATTAAAATAT
*
27752 TAATAATAATTAATACTAATTTG
1 TAAT-ATAATTAATACTAATTTA
27775 TAATATTAATTGAATTA-TAATTTA
1 TAATA-TAATT-AA-TACTAATTTA
27799 TAATATAAT
1 TAATATAAT
27808 AACATGAACT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
22 1 0.03
23 13 0.45
24 13 0.45
25 2 0.07
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (22 bp):
TAATATAATTAATACTAATTTA
Found at i:27931 original size:15 final size:16
Alignment explanation
Indices: 27904--27971 Score: 51
Period size: 14 Copynumber: 4.6 Consensus size: 16
27894 AATTTATTTC
27904 AATTAGTTATTATAAT
1 AATTAGTTATTATAAT
27920 AATTAG-TATTAT--T
1 AATTAGTTATTATAAT
*
27933 -ATAAGTTATTAACTAAT
1 AATTAGTTATT-A-TAAT
*
27950 AATTA-TTAATA-AAT
1 AATTAGTTATTATAAT
27964 AATT-GTTA
1 AATTAGTTA
27972 ATAGATTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 16
0.69 0.05 0.26
Matches are distributed among these distances:
12 4 0.10
13 5 0.12
14 11 0.26
15 7 0.17
16 7 0.17
17 5 0.12
18 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.06, T:0.47
Consensus pattern (16 bp):
AATTAGTTATTATAAT
Found at i:28068 original size:19 final size:19
Alignment explanation
Indices: 28022--28089 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 19
28012 TTCATTTAAT
28022 TAATAAATTATT-TTAAATA
1 TAAT-AATTATTATTAAATA
*
28041 TTAACAATTATTATTAAATA
1 -TAATAATTATTATTAAATA
* *
28061 TAATAATTA-AATT-ATTA
1 TAATAATTATTATTAAATA
28078 T-ATAATTATTAT
1 TAATAATTATTAT
28090 ATTTGTATGC
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
16 7 0.17
17 6 0.15
18 3 0.07
19 15 0.37
20 10 0.24
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (19 bp):
TAATAATTATTATTAAATA
Found at i:28251 original size:21 final size:22
Alignment explanation
Indices: 28227--28287 Score: 52
Period size: 24 Copynumber: 2.6 Consensus size: 22
28217 ATAAAATATT
28227 ATAATATTATATAATTA-TAAC
1 ATAATATTATATAATTATTAAC
* *
28248 ATAAATAATTAATATTATTATTAAT
1 AT-AAT-ATT-ATATAATTATTAAC
*
28273 ATAATTGTTATATAA
1 ATAA-TATTATATAA
28288 ATAAATGACT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
21 2 0.06
22 3 0.10
23 8 0.26
24 12 0.39
25 6 0.19
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (22 bp):
ATAATATTATATAATTATTAAC
Done.