Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168092.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_339, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33747
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Found at i:5158 original size:110 final size:111
Alignment explanation
Indices: 4961--5171 Score: 248
Period size: 110 Copynumber: 1.9 Consensus size: 111
4951 GGCTGGGCAT
* * * *
4961 GGGGGTCTCAGTCTCGAACCCATCGACTATCAGTGCACTCCTCTAGCTACTCCCGTGGTGAGAAC
1 GGGGGTCCCAGTCTCGAACCCATCGACTATCAGTGCACTCCTCGAGCTACTCCCGCGATGAGAAC
*
5026 GGGTCACCACATGCTGACCGAGGG-ATGACTGGGAACGACTCCCTC
66 GGGTCACCACATGCTGACCGAGGGAAGGACTGGGAACGACTCCCTC
* * *
5071 GGGGGTCCCAGT-TCTGAACCCATCGACTA-CTGGTGCACTGCTCGAGCTACTCTCGCGATGAGA
1 GGGGGTCCCAGTCTC-GAACCCATCGACTATC-AGTGCACTCCTCGAGCTACTCCCGCGATGAGA
** ** * * *
5134 GTGGGTTGCCGCGTGCTGATCGAGGGAAGGACTGGGAA
64 ACGGGTCACCACATGCTGACCGAGGGAAGGACTGGGAA
5172 TAGCTCCCTC
Statistics
Matches: 83, Mismatches: 15, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
109 3 0.04
110 70 0.84
111 10 0.12
ACGTcount: A:0.20, C:0.28, G:0.31, T:0.20
Consensus pattern (111 bp):
GGGGGTCCCAGTCTCGAACCCATCGACTATCAGTGCACTCCTCGAGCTACTCCCGCGATGAGAAC
GGGTCACCACATGCTGACCGAGGGAAGGACTGGGAACGACTCCCTC
Found at i:7447 original size:26 final size:26
Alignment explanation
Indices: 7410--7463 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
7400 TTTGGTTTGA
7410 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
*
7436 GCTTAGATTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAACTCCGTAT
7462 GC
1 GC
7464 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTCCGTAT
Found at i:7733 original size:157 final size:157
Alignment explanation
Indices: 7437--7734 Score: 350
Period size: 157 Copynumber: 1.9 Consensus size: 157
7427 ACTCCGTATG
* * ** *
7437 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAATGAGCGTGCGGGCACTGAGC
1 CTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCTACAAAACAAGCGTGCGGCCACTGAGC
* * * * * **
7502 CAGCCAGAGAGGCAAGATGTGCAAGTTGAGGATCGGCCTGATCCCCTTTTGCGTGCTGTCGATCC
66 CAGCCAAAGAGGCAAGATGCGCAAGCTGAGGATCGACCGGATCCCCTACTGCGTGCTGTCGATCC
7567 TACTACGGGTCAGGCTGCCGATCTGAT
131 TACTACGGGTCAGGCTGCCGATCTGAT
*
7594 CTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCTACAAAACAAGCG-GATGGCCACT-AC
1 CTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCTACAAAACAAGCGTG-CGGCCACTGA-
* * * * * * *
7657 GTCAGCCAAAGAGGTAGGATGCGCAAGCTGAGGATCGATCGGGTTCCCTACTGTGTGCTG-CTGA
64 GCCAGCCAAAGAGGCAAGATGCGCAAGCTGAGGATCGACCGGATCCCCTACTGCGTGCTGTC-GA
* *
7721 TCTTACTGCGGGTC
128 TCCTACTACGGGTC
7735 CTGCTACCAC
Statistics
Matches: 116, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
156 3 0.03
157 113 0.97
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.23
Consensus pattern (157 bp):
CTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCTACAAAACAAGCGTGCGGCCACTGAGC
CAGCCAAAGAGGCAAGATGCGCAAGCTGAGGATCGACCGGATCCCCTACTGCGTGCTGTCGATCC
TACTACGGGTCAGGCTGCCGATCTGAT
Found at i:8967 original size:45 final size:45
Alignment explanation
Indices: 8918--9061 Score: 117
Period size: 45 Copynumber: 3.2 Consensus size: 45
8908 CCATCATCAC
* ** *
8918 AAGCTGGCCAATGGTATGGGCACTTGTCTGGACCAGCATCGGTAG
1 AAGCTGGCCAATGGTACGGGCACTTACCTGGACCACCATCGGTAG
* ** *
8963 AAGCTAGCCCTTGGTACGGGCACTTACCTTGACCACCATCGGTAG
1 AAGCTGGCCAATGGTACGGGCACTTACCTGGACCACCATCGGTAG
* ** ** * ** * *
9008 AAGATGGCCCTTGGTGTGGTCGGTTACCTCGATCACCATCGGTAG
1 AAGCTGGCCAATGGTACGGGCACTTACCTGGACCACCATCGGTAG
*
9053 AAGATGGCC
1 AAGCTGGCC
9062 CCTAGTGCGG
Statistics
Matches: 82, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 82 1.00
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.23
Consensus pattern (45 bp):
AAGCTGGCCAATGGTACGGGCACTTACCTGGACCACCATCGGTAG
Found at i:9061 original size:135 final size:135
Alignment explanation
Indices: 8954--9255 Score: 313
Period size: 135 Copynumber: 2.2 Consensus size: 135
8944 TCTGGACCAG
* * *
8954 CATCGGTAGAAGCTAGCCCTTGGTACGGGCACTTACCTTGACCACCATCGGTAGAAGATGGCCCT
1 CATCGGCACAAGCTAGCCCTTGGTACAGGCACTTACCTTGACCACCATCGGTAGAAGATGGCCCT
* ** *
9019 TGGTGTGGTCGGTTACCTC-GATCACCATCGGTAGAAGATGGCCCCTAGTGCGGGCGATTGCCTC
66 TGGTGTGGGCGGTTACCTCAGA-CACCATCGGTAGAAGATGGCCAATAGTACGGGCGATTGCCTC
9083 GAACAC
130 GAACAC
* * * ** * *
9089 CATCGGCACATGCTAGGCCTTGGTGCAGGCGGTTGCCTTGATCACCATCGGTAGAAGATGGCCCT
1 CATCGGCACAAGCTAGCCCTTGGTACAGGCACTTACCTTGACCACCATCGGTAGAAGATGGCCCT
* * * * * * *
9154 TGGTGTGGGCGGTTACCTCAGACACCAAT-GGCACATGCTGGACC-TTGGTACGGGCGTTTGCCT
66 TGGTGTGGGCGGTTACCTCAGACACC-ATCGGTAGAAGATGG-CCAATAGTACGGGCGATTGCCT
*
9217 CAAACAC
129 CGAACAC
* * * * *
9224 CATTGGCACATGCTGGGCCTTGGTGCAGGCAC
1 CATCGGCACAAGCTAGCCCTTGGTACAGGCAC
9256 ATGCTTCAAG
Statistics
Matches: 140, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
135 134 0.96
136 6 0.04
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (135 bp):
CATCGGCACAAGCTAGCCCTTGGTACAGGCACTTACCTTGACCACCATCGGTAGAAGATGGCCCT
TGGTGTGGGCGGTTACCTCAGACACCATCGGTAGAAGATGGCCAATAGTACGGGCGATTGCCTCG
AACAC
Found at i:9062 original size:45 final size:45
Alignment explanation
Indices: 8954--9180 Score: 224
Period size: 45 Copynumber: 5.0 Consensus size: 45
8944 TCTGGACCAG
* * * ** * *
8954 CATCGGTAGAAGCTAGCCCTTGGTACGGGCACTTACCTTGACCAC
1 CATCGGTAGAAGATGGCCCTTGGTGCGGGCGGTTACCTCGATCAC
* *
8999 CATCGGTAGAAGATGGCCCTTGGTGTGGTCGGTTACCTCGATCAC
1 CATCGGTAGAAGATGGCCCTTGGTGCGGGCGGTTACCTCGATCAC
* * * * *
9044 CATCGGTAGAAGATGGCCCCTAGTGCGGGCGATTGCCTCGAACAC
1 CATCGGTAGAAGATGGCCCTTGGTGCGGGCGGTTACCTCGATCAC
* * * * * * *
9089 CATCGGCACATGCTAGG-CCTTGGTGCAGGCGGTTGCCTTGATCAC
1 CATCGGTAGAAGAT-GGCCCTTGGTGCGGGCGGTTACCTCGATCAC
*
9134 CATCGGTAGAAGATGGCCCTTGGTGTGGGCGGTTACCTCAGA-CAC
1 CATCGGTAGAAGATGGCCCTTGGTGCGGGCGGTTACCTC-GATCAC
9179 CA
1 CA
9181 ATGGCACATG
Statistics
Matches: 145, Mismatches: 34, Indels: 6
0.78 0.18 0.03
Matches are distributed among these distances:
44 2 0.01
45 139 0.96
46 4 0.03
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.22
Consensus pattern (45 bp):
CATCGGTAGAAGATGGCCCTTGGTGCGGGCGGTTACCTCGATCAC
Found at i:9189 original size:90 final size:90
Alignment explanation
Indices: 9028--9226 Score: 242
Period size: 90 Copynumber: 2.2 Consensus size: 90
9018 TTGGTGTGGT
* *
9028 CGGTTACCTCGATCACCATCGGTAGAAGATGGCCCCTAGTGCGGGCGATTGCCTCGAACACCATC
1 CGGTTGCCTCGATCACCATCGGTAGAAGATGGCCCCTAGTGCGGGCGATTACCTCGAACACCATC
*
9093 GGCACATGCTAGG-CCTTGGTGCAGG
66 GGCACATGCT-GGACCTTGGTACAGG
* * * * *
9118 CGGTTGCCTTGATCACCATCGGTAGAAGATGGCCCTTGGTGTGGGCGGTTACCTC-AGACACCAA
1 CGGTTGCCTCGATCACCATCGGTAGAAGATGGCCCCTAGTGCGGGCGATTACCTCGA-ACACC-A
*
9182 T-GGCACATGCTGGACCTTGGTACGGG
64 TCGGCACATGCTGGACCTTGGTACAGG
* * *
9208 CGTTTGCCTCAAACACCAT
1 CGGTTGCCTCGATCACCAT
9227 TGGCACATGC
Statistics
Matches: 93, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
89 3 0.03
90 88 0.95
91 2 0.02
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (90 bp):
CGGTTGCCTCGATCACCATCGGTAGAAGATGGCCCCTAGTGCGGGCGATTACCTCGAACACCATC
GGCACATGCTGGACCTTGGTACAGG
Found at i:9200 original size:45 final size:45
Alignment explanation
Indices: 9066--9249 Score: 140
Period size: 45 Copynumber: 4.1 Consensus size: 45
9056 ATGGCCCCTA
* * *
9066 GTGCGGGCGATTGCCTCGAACACC-ATCGGCACATGCTAGG-CCTTG
1 GTGCGGGCGGTTACCTCAAACACCAAT-GGCACATGCT-GGACCTTG
* * ** * * * * * *
9111 GTGCAGGCGGTTGCCTTGATCACC-ATCGGTAGAAGATGGCCCTTG
1 GTGCGGGCGGTTACCTCAAACACCAAT-GGCACATGCTGGACCTTG
* *
9156 GTGTGGGCGGTTACCTCAGACACCAATGGCACATGCTGGACCTTG
1 GTGCGGGCGGTTACCTCAAACACCAATGGCACATGCTGGACCTTG
* * * * *
9201 GTACGGGCGTTTGCCTCAAACACCATTGGCACATGCTGGGCCTTG
1 GTGCGGGCGGTTACCTCAAACACCAATGGCACATGCTGGACCTTG
9246 GTGC
1 GTGC
9250 AGGCACATGC
Statistics
Matches: 109, Mismatches: 28, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
44 2 0.02
45 105 0.96
46 2 0.02
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.23
Consensus pattern (45 bp):
GTGCGGGCGGTTACCTCAAACACCAATGGCACATGCTGGACCTTG
Found at i:9323 original size:68 final size:68
Alignment explanation
Indices: 9198--9327 Score: 179
Period size: 68 Copynumber: 1.9 Consensus size: 68
9188 ATGCTGGACC
* * * *
9198 TTGGTACGGGCGTTTGCCTCAAACACCATTGGCACATGCTGGGCCTTGGTGCAGGCACATGCTTC
1 TTGGTACGGGCGGTTGCCTCAAACACCATCGACACATGCTGGGCCTTGGTACAGGCACATGCTTC
9263 AAG
66 AAG
* * * **
9266 TTGGTACGGGCGGTTGCCTCGACCACCATCGACACGTGCTGGGCCTTGGTATGGGCACATGC
1 TTGGTACGGGCGGTTGCCTCAAACACCATCGACACATGCTGGGCCTTGGTACAGGCACATGC
9328 CTTGACCATC
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
68 53 1.00
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.24
Consensus pattern (68 bp):
TTGGTACGGGCGGTTGCCTCAAACACCATCGACACATGCTGGGCCTTGGTACAGGCACATGCTTC
AAG
Found at i:9423 original size:45 final size:45
Alignment explanation
Indices: 9374--9475 Score: 134
Period size: 45 Copynumber: 2.3 Consensus size: 45
9364 GGTGATTACA
* *
9374 TCGATCACCATCGGTAGAAGATGGCCTCTAG-TGCAAGCGGTTGCC
1 TCGATCACCATCGGTACAAGATGGCCCCT-GCTGCAAGCGGTTGCC
* *
9419 TCGATCACCATCTGTACAAGATGGCCCCTGCTGCAGGCGGTTGCC
1 TCGATCACCATCGGTACAAGATGGCCCCTGCTGCAAGCGGTTGCC
* *
9464 TCAAACACCATC
1 TCGATCACCATC
9476 AGCACATGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
44 1 0.02
45 49 0.98
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.22
Consensus pattern (45 bp):
TCGATCACCATCGGTACAAGATGGCCCCTGCTGCAAGCGGTTGCC
Found at i:9515 original size:90 final size:90
Alignment explanation
Indices: 9412--9585 Score: 222
Period size: 90 Copynumber: 1.9 Consensus size: 90
9402 TAGTGCAAGC
* * * * *
9412 GGTTGCCTCGATCACCATCTGTACAAGATGGCCCCTGCTGCAGGCGGTTGCCTCAAACACCATCA
1 GGTTACCTCGATCACCATCGGTACAAAATAGCCCCTGCTGCAGGCAGTTGCCTCAAACACCATCA
*
9477 GCACATGCTGGGCCTTGGTATGGGT
66 GCACATGCTAGGCCTTGGTATGGGT
* * * ** ** *
9502 GGTTACCTTGATCACCATCGGTAGAAAATAGCCCCTGGTGTGGGCAGTTGCCTTGAACACCATCG
1 GGTTACCTCGATCACCATCGGTACAAAATAGCCCCTGCTGCAGGCAGTTGCCTCAAACACCATCA
9567 GCACATGCTAGGCCTTGGT
66 GCACATGCTAGGCCTTGGT
9586 GCTGGCGATT
Statistics
Matches: 70, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
90 70 1.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (90 bp):
GGTTACCTCGATCACCATCGGTACAAAATAGCCCCTGCTGCAGGCAGTTGCCTCAAACACCATCA
GCACATGCTAGGCCTTGGTATGGGT
Found at i:9586 original size:45 final size:45
Alignment explanation
Indices: 9458--9586 Score: 114
Period size: 45 Copynumber: 2.9 Consensus size: 45
9448 GCTGCAGGCG
** * * * **
9458 GTTGCCTCAAACACCATCAGCACATGCTGGGCCTTGGTATGGGTG
1 GTTGCCTTGAACACCATCGGCACATGCTAGGCCTTGGTGTGGGCA
* * * * *** * *
9503 GTTACCTTGATCACCATCGGTAGAAAATAGCCCCTGGTGTGGGCA
1 GTTGCCTTGAACACCATCGGCACATGCTAGGCCTTGGTGTGGGCA
9548 GTTGCCTTGAACACCATCGGCACATGCTAGGCCTTGGTG
1 GTTGCCTTGAACACCATCGGCACATGCTAGGCCTTGGTG
9587 CTGGCGATTA
Statistics
Matches: 59, Mismatches: 25, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (45 bp):
GTTGCCTTGAACACCATCGGCACATGCTAGGCCTTGGTGTGGGCA
Found at i:9598 original size:90 final size:90
Alignment explanation
Indices: 9421--9611 Score: 206
Period size: 90 Copynumber: 2.1 Consensus size: 90
9411 CGGTTGCCTC
* * * *
9421 GATCACCATCTGTACAAGATGGCCCCTGCTGCAGGCGGTTGCCTCAAACACCATCAGCACATGCT
1 GATCACCATCGGTACAAAATAGCCCCTGCTGCAGGCAGTTGCCTCAAACACCATCAGCACATGCT
* * * *
9486 GGGCCTTGGTATGGGTGGTTACCTT
66 AGGCCTTGGTATGGGCGATTACCGT
* * ** ** *
9511 GATCACCATCGGTAGAAAATAGCCCCTGGTGTGGGCAGTTGCCTTGAACACCATCGGCACATGCT
1 GATCACCATCGGTACAAAATAGCCCCTGCTGCAGGCAGTTGCCTCAAACACCATCAGCACATGCT
*
9576 AGGCCTTGGTGCT-GGCGATTACCGT
66 AGGCCTTGGT-ATGGGCGATTACCGT
9601 GAAT-ACCATCG
1 G-ATCACCATCG
9612 ACACGAGCTG
Statistics
Matches: 83, Mismatches: 16, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
90 80 0.96
91 3 0.04
ACGTcount: A:0.21, C:0.28, G:0.27, T:0.24
Consensus pattern (90 bp):
GATCACCATCGGTACAAAATAGCCCCTGCTGCAGGCAGTTGCCTCAAACACCATCAGCACATGCT
AGGCCTTGGTATGGGCGATTACCGT
Found at i:9763 original size:383 final size:383
Alignment explanation
Indices: 8897--9770 Score: 980
Period size: 383 Copynumber: 2.3 Consensus size: 383
8887 TGCGGGCACA
* * * * * *
8897 TGCCTCGACCACCATC-ATCACAAGCT-GGCCAATGGTATGGGCACTTGTCTGGACCAGCATCGG
1 TGCCTCGACCACCATCGA-CACATGCTGGGCC-TTGGTATGGGCACATGCCTCGACCACCATCGG
* * * * * * * * *
8960 TAGAAGCTAGCCCTTGGTACGGGCACTTACCTTGACCACCATCGGTAGAAGATGGCCCTTGGTGT
64 CAAAAGATAACCCTTGGTATGGGCACTTACCTCGATCACCATCGGTAGAAGATGGCCCTTAGTGA
* * * *
9025 GGTCGGTTACCTCGATCACCATCGGTAGAAGATGGCCCCTAGTGCGGGCGATTGCCTCGAACACC
129 AGTCGGTTACCTCGATCACCATCGGTACAAGATGGCCCCTAGTGCAGGCGATTGCCTCAAACACC
* * * * * *
9090 ATCGGCACATGCTAGGCCTTGGTGCAGGCGGTTGCCTTGATCACCATCGGTAGAAGATGGCCCTT
194 ATCAGCACATGCTAGGCCTTGGTACAGGCGGTTACCTTGATCACCATCGGTAGAAAATAGCCCCT
* * *
9155 GGTGTGGGCGGTTACCTCAGACACCAATGGCACATGCTGGACCTTGGTACGGGCGTTTGCCTCAA
259 GGTGTGGGCAGTTACCTCAGACACCAATGGCACATGCTGGACCTTGGTACGGGCGATTACCTCAA
* * *
9220 ACACCATTGGCACATGCTGGGCCTTGGTGCAGGCACATGCTTCAAGTTGGTACGGGCGGT
324 ACACCATCGACACATGCTGGGCCTTGGTGCAGGCACATGCCTCAAGTTGGTACGGGCGGT
* * * * *
9280 TGCCTCGACCACCATCGACACGTGCTGGGCCTTGGTATGGGCACATGCCTTGACCATCATTGGTA
1 TGCCTCGACCACCATCGACACATGCTGGGCCTTGGTATGGGCACATGCCTCGACCACCATCGGCA
** * * *
9345 AAAGATGGCCCCTGGTATGGGTGA-TTACATCGATCACCATCGGTAGAAGATGG-CCTCTAGTGC
66 AAAGATAACCCTTGGTATGGG-CACTTACCTCGATCACCATCGGTAGAAGATGGCCCT-TAGTG-
* * *
9408 AAG-CGGTTGCCTCGATCACCATCTGTACAAGATGGCCCCT-GCTGCAGGCGGTTGCCTCAAACA
128 AAGTCGGTTACCTCGATCACCATCGGTACAAGATGGCCCCTAG-TGCAGGCGATTGCCTCAAACA
* ** *
9471 CCATCAGCACATGCTGGGCCTTGGTATGGGTGGTTACCTTGATCACCATCGGTAGAAAATAGCCC
192 CCATCAGCACATGCTAGGCCTTGGTACAGGCGGTTACCTTGATCACCATCGGTAGAAAATAGCCC
* * * *
9536 CTGGTGTGGGCAGTTGCCT-TGAACACC-ATCGGCACATGCTAGG-CCTTGGTGCTGGCGATTAC
257 CTGGTGTGGGCAGTTACCTCAG-ACACCAAT-GGCACATGCT-GGACCTTGGTACGGGCGATTAC
* * * * *
9598 CGT-GAATACCATCGACACGA-GCTGGGCCTTGGTGCAGGCACATGCCTCGAGTTGGTGCGGGTG
319 C-TCAAACACCATCGACAC-ATGCTGGGCCTTGGTGCAGGCACATGCCTCAAGTTGGTACGGGCG
9661 GT
382 GT
* * * *
9663 TGCCTCGACCACCATTGGCACATGCTTGGCCTTGGTGTGGGCACATGCCTCGACCACCATCGGCA
1 TGCCTCGACCACCATCGACACATGCTGGGCCTTGGTATGGGCACATGCCTCGACCACCATCGGCA
* * *
9728 TAAG-TCAACCCTTGGTGTGGGCACTTGCCTCGATCACCATCGG
66 AAAGAT-AACCCTTGGTATGGGCACTTACCTCGATCACCATCGG
9771 CACGTGCCAT
Statistics
Matches: 410, Mismatches: 68, Indels: 26
0.81 0.13 0.05
Matches are distributed among these distances:
382 9 0.02
383 390 0.95
384 11 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (383 bp):
TGCCTCGACCACCATCGACACATGCTGGGCCTTGGTATGGGCACATGCCTCGACCACCATCGGCA
AAAGATAACCCTTGGTATGGGCACTTACCTCGATCACCATCGGTAGAAGATGGCCCTTAGTGAAG
TCGGTTACCTCGATCACCATCGGTACAAGATGGCCCCTAGTGCAGGCGATTGCCTCAAACACCAT
CAGCACATGCTAGGCCTTGGTACAGGCGGTTACCTTGATCACCATCGGTAGAAAATAGCCCCTGG
TGTGGGCAGTTACCTCAGACACCAATGGCACATGCTGGACCTTGGTACGGGCGATTACCTCAAAC
ACCATCGACACATGCTGGGCCTTGGTGCAGGCACATGCCTCAAGTTGGTACGGGCGGT
Found at i:9786 original size:45 final size:44
Alignment explanation
Indices: 9662--9786 Score: 142
Period size: 45 Copynumber: 2.8 Consensus size: 44
9652 GTGCGGGTGG
* *
9662 TTGCCTCGACCACCATTGGCACATGCTTGGCCTTGGTGTGGGCAC
1 TTGCCTCGACCACCATCGGCACATGCAT-GCCTTGGTGTGGGCAC
* * * **
9707 ATGCCTCGACCACCATCGGCATAAGTCAACCCTTGGTGTGGGCAC
1 TTGCCTCGACCACCATCGGCACATG-CATGCCTTGGTGTGGGCAC
* *
9752 TTGCCTCGATCACCATCGGCACGTGCCATGCCTTG
1 TTGCCTCGACCACCATCGGCACATG-CATGCCTTG
9787 ATCAGCATCG
Statistics
Matches: 64, Mismatches: 15, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
45 63 0.98
46 1 0.02
ACGTcount: A:0.17, C:0.34, G:0.26, T:0.24
Consensus pattern (44 bp):
TTGCCTCGACCACCATCGGCACATGCATGCCTTGGTGTGGGCAC
Found at i:15764 original size:27 final size:27
Alignment explanation
Indices: 15734--15789 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
15724 GTCTATCGAC
* *
15734 CTTTGTC-CCCATCCTTGGACTATTGGT
1 CTTTGTCTCCC-TCCATGGACTATCGGT
15761 CTTTGTCTCCCTCCATGGACTATCGGT
1 CTTTGTCTCCCTCCATGGACTATCGGT
15788 CT
1 CT
15790 CTGCCATCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 23 0.88
28 3 0.12
ACGTcount: A:0.11, C:0.32, G:0.18, T:0.39
Consensus pattern (27 bp):
CTTTGTCTCCCTCCATGGACTATCGGT
Done.