Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168096.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_342, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 33055
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29


Found at i:14755 original size:43 final size:44

Alignment explanation


    Indices: 14707--14812  Score: 153
    Period size: 43  Copynumber: 2.5  Consensus size: 44

      14697 GCTAATGCTG

                           *                         *  
      14707 ATCGAGGCATGTGCTTGCAC-AAGTCTAGATTATGCCAATATTA
          1 ATCGAGGCATGTGCTCGCACTAAGTCTAGATTATGCCAATACTA

                            *     *                    *
      14750 ATCGAGGCATGTGC-CACACTAGGTCTAGATTATGCCAATACTG
          1 ATCGAGGCATGTGCTCGCACTAAGTCTAGATTATGCCAATACTA

                                
      14793 ATCGAGGCATGTGCTCGCAC
          1 ATCGAGGCATGTGCTCGCAC

      14813 CAAGGGCTAA


Statistics
Matches: 55,  Mismatches: 6, Indels: 3
        0.86            0.09        0.05

Matches are distributed among these distances:
  42    3  0.05
  43   48  0.87
  44    4  0.07

ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26


Consensus pattern (44 bp):   
ATCGAGGCATGTGCTCGCACTAAGTCTAGATTATGCCAATACTA

Found at i:20500 original size:13 final size:13

Alignment explanation


    Indices: 20482--20506  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

      20472 CTACTTCACT

                         
      20482 TGGCTTTTACCCA
          1 TGGCTTTTACCCA

                        
      20495 TGGCTTTTACCC
          1 TGGCTTTTACCC

      20507 TTCTTTAGAC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.12, C:0.32, G:0.16, T:0.40


Consensus pattern (13 bp):   
TGGCTTTTACCCA

Found at i:32982 original size:26 final size:26

Alignment explanation


    Indices: 32945--32998  Score: 90
    Period size: 26  Copynumber: 2.1  Consensus size: 26

      32935 CTGAGTTTGA

                                      
      32945 GCTTAGACTGGGAATGAACTCCATAT
          1 GCTTAGACTGGGAATGAACTCCATAT

                   *              *   
      32971 GCTTAGATTGGGAATGAACTCCGTAT
          1 GCTTAGACTGGGAATGAACTCCATAT

              
      32997 GC
          1 GC

      32999 CTAAGTCAAC


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  26   26  1.00

ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28


Consensus pattern (26 bp):   
GCTTAGACTGGGAATGAACTCCATAT
Done.