Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168098.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_344, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 32976
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.26
Found at i:6369 original size:26 final size:26
Alignment explanation
Indices: 6340--6392 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6330 CTGGTCCGAT
*
6340 CTTACATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
6366 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
6392 C
1 C
6393 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:6830 original size:899 final size:896
Alignment explanation
Indices: 3820--7091 Score: 4566
Period size: 899 Copynumber: 3.7 Consensus size: 896
3810 TTGCTGCCAT
* * * * *
3820 AACCCTCGGTCTGGTCCCATCTTAGACTAGGAATGAACTTAC-TATGCCTAAGTCAACCAACGAA
1 AACCCTCGGTCTGGTCCAATCTTAGACTTGGAATGAAC-TCCGTATGCCTAAGCCAACCGACGAA
* **
3884 ACGAGTGGGCGGGCGGGCACTACGTC-AGCCAGAAAGATGGGATGCGCAAGCCGTGGATCGATAG
65 ACGAGTGGGCGGGCGGGCACTACGTCGA-CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
* *
3948 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGTGCCAGTGCCATTTTTATGGCTTGT
129 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
* *
4013 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGCTTCATGGCAAGACGACTTGTTTTCTAT
194 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * * * * *
4078 TTCTCACGATCTTTGAAACTTTTTACGATTTGGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTT
259 TTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAGTTTT
* *
4143 GGCCCCAAACTTGGTAG-CTGTGATCCCTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAA
324 GGCCCCAAACTTGGTAGAC-GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
* *
4207 AAACTCGAAGTGTACAGGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAAT
388 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
4272 GGCTACTGGCAACAAACTTGAAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTTAAGGTTT
453 GGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
* * *
4337 GATGAGGGATAGTGGGCCAATATATGGGCCAAGTACCAGCACCCAACGCACATCATGTGCGCACA
518 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
*
4402 CCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGC
583 CCCCCCCGCCCCCCAATCGTCGGAACCCCAATG-C-TCGGTCAGGTTCTCCGACGATGCTCCGAC
* * *
4467 GATGGTGCCCCGGGTGAACAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCA
646 GATGGTGCCCCGGGCGAAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCG
* * *
4532 CAACCATCGATCCGGTCCGATCTTACACTAGGAATGAACTCTATATGCTTAGACCGGGAATGAAC
711 CAACCATCGATCCGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
* ** *
4597 TCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGTCGGCCAG-A-GACAGGAT
776 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAAGGGCAGGAT
* ** * *
4660 GCA-CAAGCCGTGGATCGACCGGGTCCCCCCTTGTGTGCTACCGATCCTGCTA-TGGT
841 G-AGCAAGCCGAGGATCGGTCGGGTCCCCCCCTGTGTGCTACCGATCCTGCTACT-GC
* * * *
4716 AACCCTCGGTCTAGTCCAATCTTAGAC-TGATAATGAACTCCGTAAGCCTAAGCCAACTGACGAA
1 AACCCTCGGTCTGGTCCAATCTTAGACTTG-GAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * * ** *
4780 ACGAGCGGGCGGGCGGGCACTATG-CTGGCTAGAGATGCGGGATAAGCAAGCTGTGGATCGATAG
65 ACGAGTGGGCGGGCGGGCACTACGTC-GACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
* * *
4844 GGTGGTAGATGGGTTTAGGCACATCTTCAAATTTTTGCCATGCCAATGCCATTTTTATGGCTTGT
129 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
* * * *
4909 AAATTCATGCAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTAT
194 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* *
4974 TTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAAATTTTTTCAGAAGGAGTTT
259 TTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTT-AAAATTTTTTCAAAAGGAGTTT
* *
5039 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGTCATGCACAAAAAAATTCAACTAA
323 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
* *
5104 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACATTAAT
388 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
5169 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAAGTTT
453 GGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTT
* * *
5233 CATGAGGGACAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCATGTGCG----
518 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
5294 ----CGC-CCCCCCAATCGTCGAAACCCCAATGCTGTCGGTCAAGTTCTCCGACGATGCTCCGAC
583 CCCCCCCGCCCCCCAATCGTCGGAACCCCAATGC--TCGGTCAGGTTCTCCGACGATGCTCCGAC
* * ** *
5354 GATGGTGCCCCGGGCG-AAAAAAAATGCGACACCAGCACATTTCTGAGCCCAGCATGTGCACCCG
646 GATGGTGCCCCGGGCGAAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCG
* * * * * * *
5418 CAACCGTCGATCCAGTCTGACCTTACACTGGGAATGAACTCCATATTCTTAGACTGGAAATGACC
711 CAACCATCGATCCGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
* * * *
5483 TCCGTATGCCT-AGTCAACCCACGAAACGAGTGTGGGGGCGCTCAGTCCGGCCAGAGGGGCAGGA
776 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-ACCGGCCAGAAGGGCAGGA
* * ** * *
5547 TGGGCAAGTCGAGGATCGGTCGGGT-CCCCCCTGCATGCTACCGATCCTGCTGCCGC
840 TGAGCAAGCCGAGGATCGGTCGGGTCCCCCCCTGTGTGCTACCGATCCTGCTACTGC
* * * * * *
5603 AACCCTTGGTTTGGTGTGC-ATCATAGACTTGGAATAAACTCCGTATGCCTAAGCCAATCGACGA
1 AACCCTCGGTCT-G-GTCCAATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * *
5667 AACGAGTGGGCGGGCGGGCACTATGCCGGCTAGAGAGGTGGGATGCGCAAGCTGTGGATCGATAG
64 AACGAGTGGGCGGGCGGGCACTACGTCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
* * * *
5732 GGTGATAGGTGGGTTTAGGGCACATGTTCATATTTCTGCCATGCCCATGCCATTTTTGTGGCTTG
129 GGTGGTAGGTGGGTTTA-GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
*
5797 TAAATTCATACAATGGTCCCTTAAGCCTTCATGCGAAGTTTCATGGCAAGACGACTCGTTTTCTA
193 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
5862 TTTTTCTCGACTTTTGAAACTTTTTACGGTTCGAGATTTATTTAAAATTTTTTCAAAAGGAGTTT
258 TTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAGTTT
* *
5927 TGGCCCCAAACTTGGTAGATGTGATACTTGTA-TTTTTTTGGCATGCACAAAAACAATTCAGCTA
323 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA-AATTCAGCTA
*
5991 AAAACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
387 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
6056 TGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTT
452 TGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTT
* * *
6121 TGATGAGGGATAGGGGGCCAATATGAGGGCCAAGAACCAGCACCCATCACACATCATGTGCGCAC
517 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * *
6186 ACCCCCTCCCCCGCTCCCCCAATTG-CTGGAACCCCAATGC-CGGTCAGGTTCTCCGATGATGTT
582 A---CC-CCCCCGC-CCCCCAATCGTC-GGAACCCCAATGCTCGGTCAGGTTCTCCGACGATGCT
* * * * * *
6249 TCGATGATAGTGCCCCGAGCGAAAAAAAAATGTGGCACCAACACATGCCCGAGCCTAGCATGTGC
641 CCGACGATGGTGCCCCGGGCGAAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * * *
6314 ACCCGCAACCCTTGGTCTGGTCCGATCTTACATTGGGAATGAACTCCGTATGCTTAGACTGGGAA
706 ACCCGCAACCATCGATCCGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAA
* * * *
6379 TGAACTTCGTATGCCTAAGTCAACCCATGAAGCGAGCGTGCGGGTGCTCAACCGGCCAGAAGGGC
771 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAAGGGC
* * *
6444 AGGATGAGCAAGCCGGGGATCGGTCGGGTCCCCCCCTGTGTGCTATCGATCTTGCTACTGC
836 AGGATGAGCAAGCCGAGGATCGGTCGGGTCCCCCCCTGTGTGCTACCGATCCTGCTACTGC
* * *
6505 AACCCTCGGTCCGGTTCAATCTT-GACTTGCAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCTGGTCCAATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
6569 CGAGTGGGTGGGCGAGCACTACGTCGACCAGAGAGGCGGGATGTGCGAGCCGTGGATTGATAGGG
66 CGAGTGGGCGGGCGGGCACTACGTCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGG
6634 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
131 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
* *
6699 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATAT
196 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
6764 TTCACGATTTTTGAAACTTTTTACGGCTCAAGATTTTTTTAAAATTTTTTCAAAAGGATTTTTGG
261 TTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGG
* *
6829 CCCCAAAATTGGTAGACGTGATCCTTGTATTTTTTTCGGCATGCACAAAAAAATTCAGCTAAAAA
326 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * ** * *
6894 TTGGAAGTGTACAATATTTTGTGACCATTAGAAAAAAGTGTCCCCAATGT-AGACACTTTAATGG
391 CTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTCAGACACTTTAATGG
*
6958 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
455 CTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
* *
7023 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCATGTGTGCACACC
520 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
7088 CCCC
585 CCCC
7092 GTGATGGTGG
Statistics
Matches: 2096, Mismatches: 240, Indels: 81
0.87 0.10 0.03
Matches are distributed among these distances:
885 30 0.01
886 115 0.05
887 121 0.06
888 300 0.14
889 222 0.11
895 8 0.00
896 332 0.16
897 180 0.09
898 1 0.00
899 383 0.18
900 169 0.08
901 150 0.07
902 64 0.03
903 21 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (896 bp):
AACCCTCGGTCTGGTCCAATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGTGGGCGGGCGGGCACTACGTCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCCGCCCCCCAATCGTCGGAACCCCAATGCTCGGTCAGGTTCTCCGACGATGCTCCGACGATGG
TGCCCCGGGCGAAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACC
ATCGATCCGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAAGGGCAGGATGAGCA
AGCCGAGGATCGGTCGGGTCCCCCCCTGTGTGCTACCGATCCTGCTACTGC
Found at i:7229 original size:26 final size:26
Alignment explanation
Indices: 7178--7230 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
7168 CCGGTCCAAT
* *
7178 CTTACACTGGGAATGAACTCTATATG
1 CTTACACTAGGAATGAACTCCATATG
* *
7204 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
7230 C
1 C
7231 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:7940 original size:26 final size:26
Alignment explanation
Indices: 7901--7953 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
7891 CCAGTCTGAT
7901 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
7927 CTTAGACTATGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
7953 C
1 C
7954 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:9574 original size:26 final size:26
Alignment explanation
Indices: 9545--9597 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
9535 CCGGTCTGAT
9545 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
9571 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
9597 C
1 C
9598 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:10700 original size:899 final size:894
Alignment explanation
Indices: 8830--14129 Score: 7060
Period size: 881 Copynumber: 6.0 Consensus size: 894
8820 ACTCCATATG
* * * * * **
8830 CTTAG-CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCTGGTGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACT
* *
8894 ACGTCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGAGGGTTTAGGCAC
66 ACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
8959 ATCTTCATATTTCTGCCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGG-CCCTTT
131 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC-TT
*
9023 AAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
195 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
** * * *
9088 TTTGTGGTTGGGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGTCCCCAAACTTGGTAGACGTG
260 TTTACGGTTCGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * * * *
9153 ATCCTTGTATTTTTTTTTGGCTTGCACAAAAAAATTCAGCGAAAAACTCGAAGTGCACAAGATTT
325 ATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTT
* **
9218 GGTGACCATTTGAAAAAAGTGTAGCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * **
9283 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GTCTTGCTAAGGGATAGACGGCCAAT
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT-TTGATGAGGGATAGGGGGCCAAT
* *
9347 ATAGGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCTCCCCCCCGCCCCCCCAAT
518 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCCCCCCGCCCCCCCAAT
* * * * *
9412 CACCGGAACCCCAATGTCGTCAGTCAGGTTCTCCAAG-GATGCTCCGACGATGGTGCCCTGGGCA
580 CGCCGGAACCCCAATGCCGTCGGTCAGGTTCT-C-AGCGATGCTCCG-CGATGGTGCCCCGGGCG
* * * * * **
9476 AAAAAAAATGTGGCACCAACATATGCCCTAGCTCAGTATGTGCACCCACAACCCTCGGTCCGGTC
642 AAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGGTC
9541 TGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
707 TGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * ** * * * *
9606 AGCCACGAAACTAGCGCACGGGCGCTCAGTCGGCCAGAGGGGTAGGATGCGTAAGCCGGGGATCA
772 ACCCACGAAACGAGAGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
* * * ** * * * * *
9671 ACCGGGTCCCCCCTCCGTGCTTCCAATCTTACTGCCATAACCCTCAGTCCAT-TTC-AAT
837 GCCGGGTCCCCCCTACGTGCTGCTGATCCTACTACCACAACCCTCAGT-C-TGGTCTGAT
* * * * * * * **
9729 CTTAGACTGGGAATGAACTCCGTCTGTCGAAGGCAACCGACGAAACAAACGGGTGGGTGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACT
* * *
9794 ACGTCGGCCAGAGAGGTGGGATGCGCAAGTCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCAC
66 ACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
9859 ATCTTCATATTTCTGCCATTCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTA
131 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
9924 AGCCTTCATGTGAAGTTTTATGGTAGGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTT
196 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * ** *
9989 TTAAGGCTCAGGATTTTTCTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTG
261 TTACGGTTC-GGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
10054 ATCCTTTTATTTTTGTTGGCATGCAC-AAAAAATTTAGATAAAAACTCAAAGTGTACAAGATTTT
325 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTT
* *
10118 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACATGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * *
10183 GATCTCAAACGCTCTTTAAGGGGGTGTGAGTTATC-ACGATTTGATGAGGGATAGGGGGCCAATA
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATA
*
10247 TAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGCCCGCCCCAATCGC
519 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCC-CCCCAATCGC
* * * * *
10312 CAGAAACCCCAATGCAGTTGGTCAGGTTCTCCTGCGATGCTCCAGCGATGGTGCCCCGGGTGAAA
583 C-GGAACCCCAATGCCGTCGGTCAGGTTCT-CAGCGATGCTCC-GCGATGGTGCCCCGGGCGAAA
* * ** *
10377 AAAAATGTGGCACTAGCACATGCCCGAGCCCAGCATGTGCACTCACAACCCTCGGTCTGGTCTGA
645 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGGTCTGA
** * *
10442 TCTTACGTTGGGAATGAACTCCGTATGCATAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
710 TCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * *
10507 AATGAAATGAGAGTGTGGGCGCTCAGCCGGCCAGAGGGGAAGGATGCGCAAGCAGGGGATCGACC
775 CACGAAACGAGAGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCC
** * * * * * * *
10572 TGGACCCCCCCTGCGTGCTGCTAATCCTGCTGCCATAACCCTCGGTCTGGTCGGAT
840 -GGGTCCCCCCTACGTGCTGCTGATCCTACTACCACAACCCTCAGTCTGGTCTGAT
* * * ** *
10628 CTTAGACTGGGAATGAACTCTGCATGCATAAGCCAATTGATGAAACGAGCGGGCGGGCAGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACT
* * * * * **
10693 GCGTCGG-CAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGCTTTACACAC
66 ACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
10757 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTA
131 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
10822 AGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCATGATTTTTGAAACTTA
196 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * ** * ** *
10887 TTACGATTCAGGATTTTTTTTACCTTTTTTTAGAAGGAGTTTTGGAACTAAACTTGGTAGACGTG
261 TTACGGTTC-GGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
**
10952 ATCCTTGTATTTTTGTTGGCATGTGC-AAAAAATTTCAGCTAAAAACTCGAAGTGTACAGGATTT
325 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTT-AGCTAAAAACTCGAAGTGTACAGGATTT
*
11016 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGCAGCAAACCTGTA
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
11081 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
11146 TAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCG-CCCCCCAATTGTC
519 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCAATCGCC
** * * * *
11210 GGAACCCCAACACCGTCGGTTAGGTTTTTCGGCGATGCTCTGGCGATGGTGCCCCGGGCGAAAAA
584 GGAACCCCAATGCCGTCGGTCAGG-TTCTCAGCGATGCTC-CGCGATGGTGCCCCGGGCGAAAAA
* * * * *
11275 AAACGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGTAACCCTCCGTCTGGTTTGATC
647 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGGTCTGATC
* **
11340 TT--A-T--GAATGAACT-C-TATGCTTAGACTGGGAATGAACTCCGTATGCCTATGTCAAGTCA
712 TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * *
11398 CAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGCCGG
777 CGAAACGAGAGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGG
* * * ** *
11463 GTCCCCCCCTATGTGGTGCCGATCCTACTACCACAACCCTCAGTCCAGTTTGAT
842 GT-CCCCCCTACGTGCTGCTGATCCTACTACCACAACCCTCAGTCTGGTCTGAT
* * * * * * * *
11517 CTTAGACTTGGCATGAGCTCCGTATGCCTAAGACAACCGACGAAAC-AGCAGGCAGACGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACT
* * *
11581 ACGTCGGTCAGAGAGGCGGGATGCACAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCAC
66 ACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * *
11646 ATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGCTCCCTTA
131 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* **
11711 AGCCTTTATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTAGTGAAACTTT
196 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * *
11776 TTACTGTTTGGGATTTTTTT-AAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
261 TTAC-GGTTCGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * * *
11840 ATCCTTGTATTTTTGTTGGCATGGA-AAAAAAATTCAGCTAAAACCTAGAAGTGTACATGATTTT
325 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTT
* * *
11904 GGGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAATCTGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
11969 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * *
12034 AAGGGCCAAGTACCAGTACCCATCACACATCATGTGCGCACA-CCCCCCGCCCCCCTAATCACTG
520 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCAATCGCCG
* * * * *
12098 GAACCACAATG-C--C-G-CAAG---TCAG-GCT-CTCCG-GCATGGTGGCCCAGGCGAAAAAAA
585 GAACCCCAATGCCGTCGGTCAGGTTCTCAGCGATGCTCCGCG-ATGGTGCCCCGGGCGAAAAAAA
* * *
12152 ATGTGGCACCAGCACATGCTCGAGCCCAGCATGAGCACCCGTAA-CCTCGATCCGGTCTGATCTT
649 ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGGTCTGATCTT
* *
12216 ACACTAGGAATGAACTCCGTATGCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
714 ACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
12281 AAACGAAAGTGCAGGTGCTCAACCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGCCGGGT
779 AAACGAGAGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGT
* * *
12346 CCCCCCTACGTGCTGCTGATCCTCCTACCACAACCCTCAATCTGGTCTAAT
844 CCCCCCTACGTGCTGCTGATCCTACTACCACAACCCTCAGTCTGGTCTGAT
* * * *
12397 CGTAGACTAGGAATAAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACT
** * * *
12462 ACGTCGGCCAGAGAGAAGGGATGCGTAAGTCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCAC
66 ACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
12527 ATCTTCATA-TTCTGCCATGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCGCTTA
131 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
12591 AGCCTTCATGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
196 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * *
12656 TTACGGCTCGAGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCACACTTGGTAGACATG
261 TTACGGTTCG-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
*
12721 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAGGATTTT
325 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTT
* *
12786 GTTACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
12851 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT-ATGGGATAGGGGGCCAATA
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA-GGGATAGGGGGCCAATA
** * *
12915 TAAGGGCCAAGTACCAGCACAAATCGCACATCATGTGCGCACA-CCCCCTG-CCCCCCAATCGTC
519 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCAATCGCC
* *
12978 -GAGACCCCAATGCCGTCGGTCAGGTTCTC--CG--G-T----GATGGTGCCTCGGGTG-AAAAA
584 GGA-ACCCCAATGCCGTCGGTCAGGTTCTCAGCGATGCTCCGCGATGGTGCCCCGGGCGAAAAAA
** * * *
13032 AATCCGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTGGTCCGATCT
648 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGGTCTGATCT
* *
13097 TACACTGGGAATGAACTTCGTATTCTTAGACTGGGAATGAACTCCGTA-GCCTAAGTCAACCCAC
713 TACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * *
13161 AAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATACGCAAGCCCGGGATCGGTCGGG
778 GAAACGAGAGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGG
* * *
13226 TCCCCCCTACGTGCTG-TCGATCCTACTACCGCAACCCTCTGTCTGGTCCGAT
843 TCCCCCCTACGTGCTGCT-GATCCTACTACCACAACCCTCAGTCTGGTCTGAT
* *
13278 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGAGCAGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACT
* *
13343 ACGTCAGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT-GGTTTAGGCAC
66 ACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
13407 ATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTA
131 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
13472 AGCCTTCATGTGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTT
196 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * *
13537 TTACAGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTGGGCCCCAAACTTGGTAGACATG
261 TTACGGTTCG-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
*
13602 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTATAGGA-TTT
325 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTT
*
13666 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGAGACTTTAATGGCTACTGGCAGCAAACCTGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * *
13731 AATCTCAAATGCTTTTTAAGGTGGTGTGAGTTCTCGAGGTTTGAT-AGGGAATAGGGTGCCAATA
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG-ATAGGGGGCCAATA
* * *
13795 TAAGGGCCAAGTACTAGCACCCATCGCACATCATGTTCGCACACCCCCCCGGCCCCCCAATCGCC
519 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCAATCGCC
* **
13860 GGAACCCCAATGCCG-CTGGTCAGGTTCTCTGGCGATGCTCTTACGATGGTGCCCCGGGCGAAAA
584 GGAACCCCAATGCCGTC-GGTCAGGTTCTC-AGCGATGCTC-CGCGATGGTGCCCCGGGCG-AAA
** * * *
13924 AAAAATGCAGTACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTTGGTCCGGTTCCG
645 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGG-TCTG
* * * *
13989 ATCTTACATTGAGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCC-AAGTCAAC
709 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * **
14053 CCACGAAACGAGCA-TACGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGATTAG
774 CCACGAAACGAG-AGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGG
14117 CCGGGTCCCCCCT
838 CCGGGTCCCCCCT
14130 GTGTCACACC
Statistics
Matches: 3868, Mismatches: 464, Indels: 141
0.86 0.10 0.03
Matches are distributed among these distances:
874 17 0.00
875 61 0.02
876 4 0.00
877 3 0.00
878 3 0.00
879 15 0.00
880 389 0.10
881 767 0.20
882 311 0.08
883 4 0.00
884 2 0.00
885 3 0.00
886 12 0.00
887 208 0.05
888 92 0.02
889 353 0.09
890 4 0.00
891 9 0.00
893 15 0.00
895 56 0.01
896 243 0.06
897 27 0.01
898 477 0.12
899 481 0.12
900 252 0.07
901 60 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCACT
ACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
TTACGGTTCGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCAATCGCCGG
AACCCCAATGCCGTCGGTCAGGTTCTCAGCGATGCTCCGCGATGGTGCCCCGGGCGAAAAAAAAT
GTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGGTCTGATCTTAC
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
ACGAGAGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCC
CCCCTACGTGCTGCTGATCCTACTACCACAACCCTCAGTCTGGTCTGAT
Found at i:12242 original size:26 final size:26
Alignment explanation
Indices: 12213--12265 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12203 CCGGTCTGAT
12213 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
** *
12239 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
12265 C
1 C
12266 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:13130 original size:26 final size:26
Alignment explanation
Indices: 13094--13144 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13084 TCTGGTCCGA
*
13094 TCTTACACTGGGAATGAACTTCGTAT
1 TCTTACACTGGGAATGAACTCCGTAT
*
13120 TCTTAGACTGGGAATGAACTCCGTA
1 TCTTACACTGGGAATGAACTCCGTA
13145 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (26 bp):
TCTTACACTGGGAATGAACTCCGTAT
Found at i:20691 original size:26 final size:26
Alignment explanation
Indices: 20653--20705 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20643 CTGGTCCGAT
* *
20653 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
*
20679 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
20705 C
1 C
20706 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:21576 original size:25 final size:26
Alignment explanation
Indices: 21548--21596 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21538 CTGGTCCGAT
21548 CTTACACT-GGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
21573 CTTAGACTGGGAATGAACTCCGTA
1 CTTACACTGGGAATGAACTCCGTA
21597 GGCCTAACTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:23355 original size:26 final size:26
Alignment explanation
Indices: 23326--23378 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23316 CCGGTCTGAT
*
23326 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
23352 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
23378 C
1 C
23379 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:23722 original size:890 final size:891
Alignment explanation
Indices: 19492--24075 Score: 5955
Period size: 888 Copynumber: 5.1 Consensus size: 891
19482 TACTGCCAAC
* * ** *
19492 AAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTTGAGGTTTGGTGAGGGATAAG
1 AAAC-TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TAAGGTTTGAAGAGGGATAGG
*
19557 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCCGCACACCACCC-GCCCCC
64 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCTGCCCCC
* * ** * * ** *
19621 CAAAT-G-TGGAAACCCCAATGCCGTTGGTCAGGTTCTCTAGCGATGCACTAACGATGGTGCCCT
128 C-AATCGCCGG-AA-CCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCC
** ** * * * ** * * *
19684 GGGTTAAAAAAAAATCGACACCACCACATGCACGAGCCCAGCATGTGCACCCATAACCGTCGGTT
190 GGGCGAAAAAAATGT-GGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATC
* * *
19749 CGGTCCAATCTTACATTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTA
254 CGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
19814 AGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCCGCC-GAGGGGCGGGATGCGCAAGCCAAA
319 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAG
* * * * *
19878 GATCGGTCGGGTCCCCTCCAGCGTGCTGCCGATGCTACTACC-CTAACCCTTGGTCCGGTCTGAT
384 GATCGGCCGGGTCCCC-CTA-CGTGCTGCCGATCCTACTGCCAC-AACCCTTGGTCCGGTCTAAT
* *
19942 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGGGC-AG-GTGAGCA
446 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCG-G-GCA
* * * *
20005 CTACGCCGGCCAGAGAGGCGAGATGTGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGT
509 CTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-
* * *
20070 C-CATCTTCATATTTCTACCGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCT
573 CACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
20134 TTAAGCCTTCATGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
638 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
* * *
20199 TTTTTACGGTTCGGGATTGTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCACACTTGGTAGAT
703 TTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
20264 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATACAGCTAAAAACTCGAAGTGTACAAGAT
768 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
* * *
20329 TTTGTGAACATTTGAGAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
833 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * * * * *
20388 AACCTGTAAATTCTCAAATGGTCTTTAAGGGGGTGTGAATTGTCGAGGTTTGATGAGGGATAGGG
1 AAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AAGGTTTGAAGAGGGATAGGG
* * *
20453 GGCCAATATAAGGGCCAAGTACCACCACCCATCGCACATCATGTGTGCACACCCCTTGCCCCCCC
65 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTG-CCCCCC
* * *
20518 AATCGCC-TAACCCTAATGCC-ACTGGTTC-GGTTCTCCGGTGATGCTCCGATGATGGTGCCCCG
129 AATCGCCGGAACCC-AATGCCGTC-GG-TCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCG
* * * * *
20580 AGCAAAAAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCGCAACCCTCGGTCT
191 GGC-GAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATCC
* *
20645 GGTCCGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAA
255 GGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * ** *
20710 GTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGAACAAGTCG-GG
320 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGG
* * * * * ** ** *
20774 CATTGGCCGAGTCCCTCCCTACCTGTTGCCGATCCTACTACTGCAACCCTCAGTCCAGTCTAATC
385 -ATCGGCCGGGT-CC-CCCTACGTGCTGCCGATCCTACTGCCACAACCCTTGGTCCGGTCTAATC
* ** * *
20839 TTAGACTAGGAATG-A----GTATGCCTAAGCCAACTAACGAAACGAGCAGGCGTGCGGGCACTA
447 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCACTA
* * *
20899 CATCGACCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
512 CGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* ** * *
20964 TCTTCATATATTTTACTGTGCCAATGCCATTTTTATAGCTTGTAAATTCATACAGTGGTCCCTTA
577 TCTTCATAT-TTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
21029 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAATTTT
641 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTT
* * * * * * * *
21094 TTACGATTCGAGATTTTTTTTAAATTTTTTTAGAAGAATTTTTGGCTCCATACTTGGTAGACGTG
706 TTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
*
21159 ATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
771 ATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
*
21224 AGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC-TTAATGGCTACTGGCAGCA
835 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
21280 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATA-AGGGATAGG
1 AAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTA-AGGTTTGA-AGAGGGATAGG
* * *
21344 GGGCCAATATAAGGGCCAAGTACTAGCACCCATCGTACATCATGTGCGAACAACCCCCCTGCCCC
64 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A-CCCCCTGCCCC
* * *** *
21409 CCAAATCACCGGAACCCTAATGCCGTCGATCAGGTTCTCCGGTGATGCTCCGGTAATGGTTCCCC
127 CC-AATCGCCGGAACCC-AATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCC
* * * * *
21474 GAGCGAAAAAAAATATGGCACCAGCACATACCCGAGCCTAGCATGTGCACGCGCAACCCTCGATC
190 GGGCG-AAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATC
* *
21539 TGGTCCGATCTTACACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAGGCCTA
254 CGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
21603 ACTGAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCAGGATACGCAAGCCGGG
319 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAG
* *
21668 GGTCGGCCGGGTCCCCCCTACGTGCTGCCGATCCTACTGCCACAACCCTTGGTCCGGTCCAATCT
384 GATCGGCCGGGT-CCCCCTACGTGCTGCCGATCCTACTGCCACAACCCTTGGTCCGGTCTAATCT
* * *
21733 TAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCACTAC
448 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCACTAC
** * * * *
21798 ACCGGCCAGAGTGGCGGGATGCGTAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAA
513 GTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
21863 CTTCATATTTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAG
578 CTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
21928 CCTCCATGTGAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAATTTTTT
643 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTT
* * * * ** * *
21993 ACGGTTCGAGATTTTTTTAAAATTTTATCAAAAGGAGTTTTGGCCCCACACTCAGCAGACATGAT
708 ACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
22058 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTATAGGATTTTGT
773 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
22123 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
838 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * * *
22177 AACCTGTAAAATCTCAAATGGTCTTTAAAGGGGTGTGAGTTCTAGAGGTTTCATGAGGGATAGGG
1 AAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTA-AGGTTTGAAGAGGGATAGGG
* * *
22242 GGTCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACAACCCCACCCGCCCC
65 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-A-CCC-CCTG-CCC
* * *
22307 CCCAATCGCGGGAACCCCAATGCCGCCGATCAGG-T-T-C-----T--T-CGACGATGGTGCCCC
126 CCCAATCGCCGGAA-CCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCC
* * * **
22361 GAGCGAAAAAAAATGTGGCACCAGCATATGCACGAGCCCAGCATGTGCACCCATAACCCTC-AGT
190 GGGCG-AAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGA-T
* * * * * *
22425 CCAGTCCAATCTTACACTGAGAATGAACTTCGTATGCCTAGATTGGGAATGAACTCCGTATGCCT
253 CCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
22490 AACTGAACCCACGAAATGAGTGTGCGGTCTCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGA
318 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGA
* * * * *
22555 GGATCGGCCGGGTTCCCCCTATGTGCCGCTGATCCTACTGCCACAACCTTTGGTCCGGTCTGATC
383 GGATCGGCCGGG-TCCCCCTACGTGCTGCCGATCCTACTGCCACAACCCTTGGTCCGGTCTAATC
**
22620 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCAAGCACTA
447 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCACTA
* * *
22685 CGTCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGCTGGTAGGTAGGTTTAGGCACA
512 CGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
22750 TCTTCATATTTCTGCCATGCCAATGCTAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
577 TCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * **
22815 GCCTTCATGTGAAGTTTCATGGCAAGACTACTCATTTTTTATTTTTCATGATTTTTGAAACTTTT
642 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTT
* * * *** *
22880 TATGATTCGGGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTAACAGTCGTGA
707 TACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * *
22945 TCCGTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTGAAAACTCGAAGTGTACAGGATTTTG
772 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
*
23010 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
837 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
23065 AAACTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCCTAAGGTTTGAAGAGGGATGGGG
1 AAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-CTAAGGTTTGAAGAGGGATAGGG
*
23129 GGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTG-CCCCCA
65 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGCCCCCCA
* * * *
23193 ATTGCCGGAACCCAATGCCGTCGGTCAGG-TCTTCTGGTGATGCTCCGACGATCGTGCCCCGGGT
130 ATCGCCGGAACCCAATGCCGTCGGTCAGGTTC-TCCGGTGATGCTCCGACGATGGTGCCCCGGGC
** * *
23257 GAAAAAAATGTCACACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAACCCTCTATCCGGTC
194 GAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATCCGGTC
* *
23322 TGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
259 CGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * **
23387 ACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCATAAGCCGAGGATC-
324 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCG
* * * * * * *
23451 GTCGAGTCCACCCTAAGTGCTGCTGATCCTACTGCCACAACCCTCGGTCTGGTCCAATCTTAGAC
389 GCCGGGTCC-CCCTACGTGCTGCCGATCCTACTGCCACAACCCTTGGTCCGGTCTAATCTTAGAC
* * *
23516 TGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGAGAGCGGGCACTGCGTCGG
453 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCACTACGTCGG
* * * *
23581 CCAGAGAGGCGGGATGTGTAAGCCATGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCA
518 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
**
23646 TATTTCTACCATTACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
583 TATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
23711 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGTTTTTTAAAACTTTTTACGGT
648 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGT
** * * * *
23776 TTAGAATTTTTGTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACATGGTAGACGTGATCCTTG
713 TCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * *
23841 TATTTTTGTTGGCATGCATAAAAAAATTCAGCTGAAAACTCGAAGTGTACAAGATTTTGTGAGCA
778 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
* * * *
23906 TTTGAAAAAAGTGTCCCCATTTCAAACTCTTTAATGGCTATTGGTAGCA
843 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
23955 AAATTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTTAAGAGGGATAGGG
1 AAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AAGGTTTGAAGAGGGATAGGG
* * * * * *
24020 GGCCAATATAAAGGCTAAATACCAGCACCCATCGTACATTATGTGTGCACACCCCC
65 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
24076 AGCATGTGCA
Statistics
Matches: 3246, Mismatches: 384, Indels: 121
0.87 0.10 0.03
Matches are distributed among these distances:
881 18 0.01
882 14 0.00
883 1 0.00
884 3 0.00
885 3 0.00
886 2 0.00
887 156 0.05
888 585 0.18
889 5 0.00
890 480 0.15
891 347 0.11
892 315 0.10
893 146 0.04
894 130 0.04
895 405 0.12
896 183 0.06
897 309 0.10
898 135 0.04
899 9 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
AAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAAGGTTTGAAGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGCCCCCCAA
TCGCCGGAACCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGGCGA
AAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATCCGGTCCG
ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGGC
CGGGTCCCCCTACGTGCTGCCGATCCTACTGCCACAACCCTTGGTCCGGTCTAATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCACTACGTCGGCCA
GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCG
GGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
Found at i:24154 original size:26 final size:26
Alignment explanation
Indices: 24118--24169 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
24108 GATCTTGCAT
*
24118 TGGGAATGAACTCCGTATGCTTAGGC
1 TGGGAATGAACTCCGTATGCCTAGGC
24144 TGGGAATGAACTCCGTATGCCTAGGC
1 TGGGAATGAACTCCGTATGCCTAGGC
24170 CAACCGACGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (26 bp):
TGGGAATGAACTCCGTATGCCTAGGC
Found at i:24878 original size:26 final size:26
Alignment explanation
Indices: 24849--24901 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24839 CTGGTCCGAT
*
24849 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24875 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
24901 C
1 C
24902 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:25730 original size:26 final size:26
Alignment explanation
Indices: 25694--25746 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
25684 CCAGTCCAAT
25694 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
25720 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
25746 C
1 C
25747 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:25829 original size:871 final size:868
Alignment explanation
Indices: 24137--29020 Score: 5182
Period size: 871 Copynumber: 5.6 Consensus size: 868
24127 ACTCCGTATG
* * * *
24137 CTTAGGCTGGGAATGAACTCCGTATGCCTAGGCCAACCGACGAAATGAGCGGGCGGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCACT
* * *
24202 ACGCCGGTCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
66 ACGCC-GCCAGAGAGGAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
24267 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
130 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
24332 AGCCTTCATGCGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTTTAAAACTTT
195 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTT
* * * ** *
24397 TTACGGTTCGGGATTTTTTAAAAAAATTTTCAGAAGGAGTTTTGGCCCCACACTTGGTAGACGTG
260 TTACAGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
*
24462 ATCCTTGTATTTTTTTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
325 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* *
24527 GTGACCACTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTA
390 GTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
24592 AAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATG
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
** * *
24657 TAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACA-ACCCCGCCCCCCCAATCACGG
519 TAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGCCCCCCAAATCAC-G
*
24721 GAA-CCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCTGACGATGGTGGCCCGAGCGAAAAA
583 GAACCCCCAATGCCGCCGGTCAGG-T-T----C--T-CTC---C---GG-GG--C-A---AAAAA
* *
24785 AAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATC
626 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCC-CGGTCCGGTCCGATC
* *
24850 TTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
690 TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
24915 CGAAATGAACGT-AC-GGGC-G-CTCAGTC------G-TGGAT--------C-GG-T--TGGGTC
755 CGAAATGAGCGTGCCAGCGCTGACTCAGCCAGAGGGGCAGGATGCACAAGCCGGGATCACGGGTC
*
24957 CCCCTCTAG-GTGCTGTCAATACTGTTGCTGCAACCCTCAATCTGGTCTGAT
820 CCCCTCT-GTATGCTG-CAAT-CTGTTGCTGCAACCCTCAATCTGGTCTGAT
* * * * * *
25008 CTCAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGTCGGAACGTGTGGGCGGGCGAGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCACT
* * * ** * *
25073 ATGCTGACTAGAGAGGAAAGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCAC
66 ACGCCG-CCAGAGAGGAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
25138 ATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
130 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
25203 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTT
195 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTT
* * *
25268 TTACGGTTCAGGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCACACTTGGTAGACGTG
260 TTACAGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
25333 GTCCATGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAGGATTTT
325 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* ***
25398 GTGACCATTTGAGAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGATGGCAAACCTGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
25463 AATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
25528 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC-CCCCCC-AATCGTCGA
520 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGCCCCCCAAATC-ACGG
* *
25591 AACCCCCAATGCCGCCGTTCAGGTTCT-T-C-GGGCAAAAAAAAATGCAGCACCAGCACATGCCC
584 AACCCCCAATGCCGCCGGTCAGGTTCTCTCCGGGGCAAAAAAAAATGCGGCACCAGCACATGCCC
* *
25653 GAGCCCAGCATGTGCACCCGCAACCACCGGTCCAGTCCAATCTTACACTGGGAATGAACTCCGTA
649 GAGCCCAGCATGTGCACCCGCAACC-CCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTA
* *
25718 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTGAACCCATGAAATGAGCGTGCCAGCGCTGA
713 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCCAGCGCTGA
* *
25783 CTCAGCCAGAGGGGCAGGATGCACAAGCCGAAGATCGACCGGGTCCCCCTCTGCATGCTGCCAAT
778 CTCAGCCAGAGGGGCAGGATGCACAAGCCG-GGATC-A-CGGGTCCCCCTCTGTATGCTG-CAAT
** *** ** ** *
25848 CTTGGAGCCATAACCCTCGGTCCAGACTGAT
839 C-TGTTGCTGCAACCCTCAATCTGGTCTGAT
* * *
25879 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGAGGGTGGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCACT
* *
25944 ACGCCGGTCAGA-AAGACGGGATGCGCAAG-CGATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 ACGCC-GCCAGAGAGGA-GGGATGCGCAAGCCG-TGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
26007 ACATCTTCATATTTTTGCCATGTCATTGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCT
128 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
26072 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTGTTTTTCATGATTTTTAAAACT
193 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* * * *
26137 TTTTACAGTTCGGGATTTTTTTAAAATTTTTTCAGATGGAGTTTTGACCCCAAACTTGATAGACG
258 TTTTACAGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * * **
26202 TGATCCTT-TTTTTTTTTTGGCAGGCACAAAAAAATTTAGCTAAAAACTCGAATTGTACAACATT
323 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
26266 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
388 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
26331 AAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGTGATAGGGGGCCAAT
453 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
26396 ATAAGGGCCAAGTACTAGCACCCATCACACATCATGTGCGTACACCCCCCTGCCCCCCAAATCAC
518 ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC-GCCCCCCAAATCA-
* * ** * *
26461 CAGAACCCCCAATGCCGCCGGTCTGG-T-TCTCC---G------ACGAT---GCTCC-G-ATGAT
581 CGGAACCCCCAATGCCGCCGGTCAGGTTCTCTCCGGGGCAAAAAAAAATGCGGCACCAGCA-CAT
* * * * * * *
26510 G---GTGCCCCAAC-TG-GGA-ACG-AA---C--TTC-GT---ATGCTAAGACTGGGAATGAACT
645 GCCCGAG-CCCAGCATGTGCACCCGCAACCCCGGTCCGGTCCGAT-CTTACACTGGGAATGAACT
* ** * * ** * ** * *** ***
26559 CCGTATGCGTAAGTCAACCACGAAACGAGTGTGCGGGTG-CTCAG-CTGGCCA-GAGGGGCAG-G
708 CCGTATGC-TTAG---A-CTGGGAATGA-ACTCCGTATGCCTAAGTCAACCCACGAAATG-AGCG
* ** ** * **** ** ** * *
26620 ATAAGCAAGTCGAGGA-TC-G--ATCGGGTCCCCCT-CTACGTGTTGTCGATC-CTGCTGCTGCA
766 -T--GCCAG-CGCTGACTCAGCCAGAGGGGCAGGATGC-ACAAGCCG-GGATCAC-G--GGT-C-
* * * * * *
26679 ACCTTCGGTCTGATCCAATCT-------------T--A--------GA-
820 CCCCTCTGTATGCTGCAATCTGTTGCTGCAACCCTCAATCTGGTCTGAT
* * * * * *
26704 C-TAG--T---AATGAAGTCTGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGTGGGCACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCACT
* *
26763 ACACCGGCCAGAGA-GACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
66 ACGCC-GCCAGAGAGGA-GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
26827 -ATCTTCATATTTTTGCCCT-ACAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTT
129 CATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
26889 AA-CCTTCATGTGGAAGTTTCAT-GCAAGACGACTCG-TTTCTATTGTTCACAATTTTT-GAACT
194 AAGCCTTCATGT-GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* * * *
26950 TTTTAC-GGTCAAGA-TTTTTTAAAATTTTTTTCAGAGGGAGTTTTGACCCCAAACTTGGTAGAC
258 TTTTACAGTTCAGGATTTTTTTAAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
27013 GTGATCCTTGTATTTTTGTTAGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
322 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
*
27078 TTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
387 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
27143 TCAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
452 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
27208 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGCCTCCCCAAAT
517 TATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA--CCCCCCGCC-CCCCAAAT
*
27273 CACCGGAACCCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAGTGATGGTGCCCTAAGCG
579 CA-CGGAACCCCCAATGCCGCCGGTCAGG-T-T----C--T-CTCC---G--GG-G--C--A---
* * * * *
27338 AAAAAAAATGTGGCACCAGCACATGTCCAAGCCCAGCATGTGCACCTGCAACCCTCAGTCCGGTC
621 AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCC-CGGTCCGGTC
* * * *
27403 CGATCTTACACTGGGAATGAACTCTGTGTGCTTAAATTGGGAATGAACTCCGTATGCCTAAGTCA
685 CGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* *** * * * ** *
27468 ACCCACGAAATGAGAGTGTGGGTGCTTAGC-CGGCCAGAGGGGCAGGATGCGTAAGCTGGGGATC
750 ACCCACGAAATGAGCGTGCCAGCGCTGA-CTCAGCCAGAGGGGCAGGATGCACAAGC-CGGGATC
* * * ** * *
27532 AGTCGGGTCCCCCTCTGTATCCTGCTGATCTTGCTGCCACAACCCTCAGTCTGGTTTGAT
813 A--CGGGTCCCCCTCTGTATGCTGC-AATC-TGTTGCTGCAACCCTCAATCTGGTCTGAT
* * * * *
27592 TTTAGATTGGGAAT-AACTCCGTATGCCTAAGCCAACCAACAAAACGAATGGGCGGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCACT
* * ** * * **
27656 ACGCCAGCCAGAAAGGCGACATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTGTAGGTGC
66 ACGCC-GCCAGAGAGGAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
27721 ATCTTCATATTTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
130 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
27786 AGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACGTT
195 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTT
27851 TTACAGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
260 TTACAGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
27916 ATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCAAAAAAATCGAAGTGTACAGGATTTT
325 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* * * * * *
27981 GTGACCATTTGAAAAAACTGTCCCCATTCCAGACGCTTTAATCGCTACTGGCAGTAAACCCGTAA
390 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
28046 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-GAAGGTTTGATGAGGGATAGGGGGCCAATA
455 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
28110 TAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCACACACCCCCCGCCCCCCAAATCGTCG
519 TAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGCCCCCCAAATC-ACG
* * * * *
28175 GAACCTCCGACGTCGCCGGTCAGGTTCTC-CGGCGATGGCGCCCTGGGCAAAAAAAATGCGGCAC
583 GAACCCCCAATGCCGCCGGTCAGGTTCTCTC--CG--GG-G--C----AAAAAAAAATGCGGCAC
* **** **
28239 CAGCACATGCCC-ATGCCCAGCATGT-CACCTGCAAGCCTTTATCCGGTTTGATCTTACACTGGG
637 CAGCACATGCCCGA-GCCCAGCATGTGCACCCGCAA-CCCCGGTCCGGTCCGATCTTACACTGGG
* * *
28302 AATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCTACCCACGAAACGAGC
700 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGC
** * * ** * *
28367 GTGCTGGCACTTAGC-CAGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCCAC
765 GTGCCAGCGCTGA-CTCAGCCAGAGGGGCAGGATGCACAAGCC-GGGATC--ACGGGTCCCCCTC
* * *
28431 TGTATGCAGCCGATCT-TACTGCTGCAACCCTCGAT-TCGGTCTGAT
826 TGTATGCTG-CAATCTGT--TGCTGCAACCCTCAATCT-GGTCTGAT
* *
28476 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCT-GGCGGGCGGGCAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-TGGGCGGGCGGGCAC
* * *
28540 TACGTCGGCCAGAGAAGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
65 TACG-CCGCCAGAGAGGAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
28605 CATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
129 CATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
28670 AAGCCTTAATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTT
194 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTT
* * * *
28735 TTTACAGTTCGGGATTTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGATAGACGT
259 TTTACAGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
28800 GATCCTTGTATTTTTGTTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
324 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
28865 TGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
28929 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATA
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
*
28994 TAAGGG-CAAGTACCAACACCCATCACA
519 TAAGGGCCAAGTACCAGCACCCATCACA
29021 TATTGTCGTA
Statistics
Matches: 3385, Mismatches: 428, Indels: 388
0.81 0.10 0.09
Matches are distributed among these distances:
811 10 0.00
812 50 0.01
813 223 0.07
814 19 0.01
815 62 0.02
816 45 0.01
817 7 0.00
818 19 0.01
819 102 0.03
820 3 0.00
822 1 0.00
824 3 0.00
825 2 0.00
826 6 0.00
835 1 0.00
836 1 0.00
845 137 0.04
846 28 0.01
847 7 0.00
848 8 0.00
849 30 0.01
850 13 0.00
851 26 0.01
852 16 0.00
853 5 0.00
854 5 0.00
855 6 0.00
856 9 0.00
857 3 0.00
858 6 0.00
859 5 0.00
860 4 0.00
861 12 0.00
862 25 0.01
863 12 0.00
864 22 0.01
865 7 0.00
866 4 0.00
867 25 0.01
868 3 0.00
869 8 0.00
870 403 0.12
871 699 0.21
872 9 0.00
873 27 0.01
877 1 0.00
883 20 0.01
884 287 0.08
885 405 0.12
886 11 0.00
887 3 0.00
888 1 0.00
889 5 0.00
891 2 0.00
893 92 0.03
894 21 0.01
895 8 0.00
896 47 0.01
897 51 0.02
898 28 0.01
899 10 0.00
900 265 0.08
901 10 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (868 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCACT
ACGCCGCCAGAGAGGAGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTT
TACAGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGCCCCCCAAATCACGGAA
CCCCCAATGCCGCCGGTCAGGTTCTCTCCGGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGA
GCCCAGCATGTGCACCCGCAACCCCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGC
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCCAGCGCTGACTC
AGCCAGAGGGGCAGGATGCACAAGCCGGGATCACGGGTCCCCCTCTGTATGCTGCAATCTGTTGC
TGCAACCCTCAATCTGGTCTGAT
Found at i:26557 original size:26 final size:27
Alignment explanation
Indices: 26519--26571 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
26509 TGGTGCCCCA
*
26519 ACTGGGAACGAACTTCGTATGC-TAAG
1 ACTGGGAACGAACTCCGTATGCGTAAG
*
26545 ACTGGGAATGAACTCCGTATGCGTAAG
1 ACTGGGAACGAACTCCGTATGCGTAAG
26572 TCAACCACGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (27 bp):
ACTGGGAACGAACTCCGTATGCGTAAG
Found at i:28327 original size:26 final size:26
Alignment explanation
Indices: 28291--28343 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
28281 CCGGTTTGAT
*
28291 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
28317 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
28343 C
1 C
28344 CTAAGTCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:28752 original size:885 final size:893
Alignment explanation
Indices: 26519--29017 Score: 3519
Period size: 885 Copynumber: 2.8 Consensus size: 893
26509 TGGTGCCCCA
* * * *
26519 ACTGGGAACGAACTTCGTATGCTAAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCACGAAA
1 ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCACCCACGAAA
* * * * ** * * * *
26584 CGAGTGTGCGGGTGCTCAGCTGGCCAGAGGGGCAGGATAAGCAAGTCGAGGATCGATCGGGTCCC
66 CGAGAGTGCTGGTGCTTAGCCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGTCGGGTCCC
*** * * * * * ** *
26649 CCTCTACGTGTTGTCGATCCTGCTGCTGCAACCTTCG-GTCTGATCCAATCTTAGACTAGTAATG
131 CCTCTGTATGCTGCCGATCTTGCTGCTGCAACCCTCGAGTCTGGTCTGATCTTAGACTAGGAATG
* * * * * * *
26713 AAGTCTGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGTGGGCACCACACCGGCCAGAG-A
196 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCTGGCGGGCGGGCACTACGCCGGCCAGAGAA
* *
26777 GACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA-ATCTTCATATTTTT
261 G-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
26841 GCCCT-ACAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA-CCTTCATGTGGA
325 GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT-GA
* * * * *
26903 AGTTTCAT-GCAAGACGACTCGTTTCTATTGTTCACAATTTTTG-AACTTTTTAC-GGTCAAGA-
389 AGTTTCATGGCAAGACGACTCTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCAGGAT
* *
26964 TTTTTTAAAATTTTTTTCAGAGGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTT
454 TTTTTTAAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* *
27029 TGTTAGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAA
518 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAA
* *
27094 AAAAGTGTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTCAAATCTCAAATGCT
583 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
27159 CTTTAAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
648 CTTTAAGGGGGTGTGAGTTCT-GAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
*
27223 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCGCCTCCCCAAATCACCGGAACCCCCAA
712 CCAGCACCCATCGCACATCATGT-CGCACACACCCCCCGCCTCCCCAAATCACCGGAACCCCCAA
* * * *
27288 TGCCGTCGGTCAGGTTCTCCGGCGATGCTCCAGTGATGGTGCCCTAAGCGAAAAAAAATGTGGCA
776 CGCCGCCGGTCAGGTTCTCC-GCGA-G--CCA--GATGGCGCCCTAAGCGAAAAAAAATGCGGCA
*
27353 CCAGCACATGTCCAAGCCCAGCATGTGCACCTGCAACCCTCAGTCCGGTCCGATCTTAC
835 CCAGCACATGCCCAAGCCCAGCATGTGCACCTGCAACCCTCAGTCCGGTCCGATCTTAC
* * *
27412 ACTGGGAATGAAC-TCTGTGTGCTTAAATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
1 ACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-ACCCACGA
* * *
27476 AATGAGAGTG-TGGGTGCTTAGCCGGCCAGAGGGGCAGGATGCGTAAGCTGGGGATCAGTCGGGT
64 AACGAGAGTGCT-GGTGCTTAGCCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGTCGGGT
* * ** * * * *
27540 CCCCCTCTGTATCCTGCTGATCTTGCTGCCACAACCCTC-AGTCTGGTTTGATTTTAGATTGGGA
128 CCCCCTCTGTATGCTGCCGATCTTGCTGCTGCAACCCTCGAGTCTGGTCTGATCTTAGACTAGGA
* * * *
27604 AT-AACTCCGTATGCCTAAGCCAACCAACAAAACGA-ATGGGCGGGCGGGCACTACGCCAGCCAG
193 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCT-GGCGGGCGGGCACTACGCCGGCCAG
** * * **
27667 A-AAGGCGACATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTGTAGGTGCATCTTCATAT
257 AGAA-GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
27731 TTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
321 TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
* *
27796 TGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACGTTTTACAGTTCA
386 TGAAGTTTCATGGCAAGACGACTC-TTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCA
27861 GGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
450 GGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * *
27926 TTTTATTGGCATGCACAAAAAAATTCAGCAAAAAAATCGAAGTGTACAGGATTTTGTGACCATTT
515 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
* * * * * *
27991 GAAAAAACTGTCCCCATTCCAGACGCTTTAATCGCTACTGGCAGTAAACCCGTAAAATCTCAAAT
580 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
28056 GCTCTTTAAGGGGGTGTGAGTTCTGAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAA
645 GCTCTTTAAGGGGGTGTGAGTTCTGAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
** * *
28121 TACCAGCACCCATCGCACATCATGT-GCACACACCCCCCGCC-CCCCAAATCGTCGGAACCTCCG
710 TACCAGCACCCATCGCACATCATGTCGCACACACCCCCCGCCTCCCCAAATCACCGGAACCCCCA
* **
28184 ACGTCGCCGGTCAGGTTCT-C-CG-G-C-GATGGCGCCCTGGGC-AAAAAAAATGCGGCACCAGC
775 ACGCCGCCGGTCAGGTTCTCCGCGAGCCAGATGGCGCCCTAAGCGAAAAAAAATGCGGCACCAGC
* * * **
28243 ACATGCCCATGCCCAGCATGT-CACCTGCAAGCCTTTA-TCCGGTTTGATCTTAC
840 ACATGCCCAAGCCCAGCATGTGCACCTGCAA-CCCTCAGTCCGGTCCGATCTTAC
28296 ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCTACCCACGAA
1 ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-ACCCACGAA
* ** * *
28361 ACGAGCGTGCTGGCACTTAGCCAGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGCCGGGTCC
65 ACGAGAGTGCTGGTGCTTAGCCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGTCGGGTCC
* * * *
28426 CCCACTGTATGCAGCCGATCTTACTGCTGCAACCCTCGATTC-GGTCTGATCTTAGACTAGGAAT
130 CCCTCTGTATGCTGCCGATCTTGCTGCTGCAACCCTCGAGTCTGGTCTGATCTTAGACTAGGAAT
* *
28490 GAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCTGGCGGGCGGGCACTACGTCGGCCAGAGA
195 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCTGGCGGGCGGGCACTACGCCGGCCAGAGA
28555 AGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
260 AGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
28620 GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTAATGTGAA
325 GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
*
28685 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGGGAT
390 GTTTCATGGCAAGACGACTC-TTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCAGGAT
* * *
28750 TTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGATAGACGTGATCCTTGTATTTTT
454 TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
*
28815 GTTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAA
519 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAA
28880 AAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
584 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
28944 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACC
649 TTTAAGGGGGTGTGAGTTCTGAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
*
29008 AACACCCATC
714 AGCACCCATC
29018 ACATATTGTC
Statistics
Matches: 1422, Mismatches: 160, Indels: 58
0.87 0.10 0.04
Matches are distributed among these distances:
883 16 0.01
884 291 0.20
885 413 0.29
886 15 0.01
889 1 0.00
892 3 0.00
893 138 0.10
894 123 0.09
895 7 0.00
896 47 0.03
897 54 0.04
898 35 0.02
899 10 0.01
900 259 0.18
901 10 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (893 bp):
ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCACCCACGAAA
CGAGAGTGCTGGTGCTTAGCCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGTCGGGTCCC
CCTCTGTATGCTGCCGATCTTGCTGCTGCAACCCTCGAGTCTGGTCTGATCTTAGACTAGGAATG
AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCTGGCGGGCGGGCACTACGCCGGCCAGAGAA
GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG
TTTCATGGCAAGACGACTCTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCAGGATTT
TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTGAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTCGCACACACCCCCCGCCTCCCCAAATCACCGGAACCCCCAACGCCG
CCGGTCAGGTTCTCCGCGAGCCAGATGGCGCCCTAAGCGAAAAAAAATGCGGCACCAGCACATGC
CCAAGCCCAGCATGTGCACCTGCAACCCTCAGTCCGGTCCGATCTTAC
Found at i:29801 original size:17 final size:16
Alignment explanation
Indices: 29781--29834 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
29771 TTTTTAGGAC
*
29781 TTTGGATTTTAAGAGGT
1 TTTGGATTTT-AGGGGT
*
29798 TTTGAATTTTAGGGGAT
1 TTTGGATTTTAGGGG-T
29815 TTTGGATTTTTAGGGGT
1 TTTGGA-TTTTAGGGGT
29832 TTT
1 TTT
29835 AAAAACTTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 4 0.12
17 19 0.59
18 9 0.28
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (16 bp):
TTTGGATTTTAGGGGT
Found at i:30090 original size:3 final size:3
Alignment explanation
Indices: 30082--30110 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
30072 AGGCAGGGAA
30082 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
30111 ATATTTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:31216 original size:14 final size:14
Alignment explanation
Indices: 31199--31227 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
31189 GTTTTTCTGC
31199 TATTTTTTTGTATT
1 TATTTTTTTGTATT
31213 TATTTTTTTGTATT
1 TATTTTTTTGTATT
31227 T
1 T
31228 CATATAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (14 bp):
TATTTTTTTGTATT
Found at i:31549 original size:87 final size:88
Alignment explanation
Indices: 31412--31620 Score: 285
Period size: 88 Copynumber: 2.4 Consensus size: 88
31402 AAAAATAATA
* * ** *
31412 AATCGATTGAGATAACACACGTGAATCAAAATTATGCCCGGAGATCTTACAAAATAGACTGGGAT
1 AATCGATCGAGATAACA-TCGCAAATCAAAATTATGCCCGAAGATCTTACAAAATAGACTGGGAT
*
31477 AACATCG-CAGTCAAAAGATAAAG
65 AACATCGTAAGTCAAAAGATAAAG
* * * * *
31500 CATCGATCGAGATAACATCGCAAATCGAAATTATGTCCGAAGGTCTTACAAAATTGACTGGGATA
1 AATCGATCGAGATAACATCGCAAATCAAAATTATGCCCGAAGATCTTACAAAATAGACTGGGATA
*
31565 ACATCGTAAGTCAAAAGATAAGG
66 ACATCGTAAGTCAAAAGATAAAG
*
31588 AATCGATCGGGATAACATCGCAAATCAAAATTA
1 AATCGATCGAGATAACATCGCAAATCAAAATTA
31621 CACTCAGAGG
Statistics
Matches: 105, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
87 46 0.44
88 59 0.56
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.22
Consensus pattern (88 bp):
AATCGATCGAGATAACATCGCAAATCAAAATTATGCCCGAAGATCTTACAAAATAGACTGGGATA
ACATCGTAAGTCAAAAGATAAAG
Found at i:31655 original size:22 final size:23
Alignment explanation
Indices: 31627--31687 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
31617 ATTACACTCA
31627 GAGGTCTTA-AGAATCAAACCT-G
1 GAGGTCTTACAGAATC-AACCTCG
* **
31649 GAGGTCTTATAGAATCATGCTCG
1 GAGGTCTTACAGAATCAACCTCG
31672 GAGGTCTTACAGAATC
1 GAGGTCTTACAGAATC
31688 GACTGGAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
22 12 0.35
23 22 0.65
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (23 bp):
GAGGTCTTACAGAATCAACCTCG
Found at i:31787 original size:133 final size:130
Alignment explanation
Indices: 31532--31906 Score: 396
Period size: 133 Copynumber: 2.8 Consensus size: 130
31522 AATCGAAATT
* * * * *
31532 ATGTCCGAAGGTCTTACAAAATTGACTGGGATAACATCGTAAGTCAAAAGATAAGGAATCGATCG
1 ATGTCCGGAGGTCTTACAGAATTGACT-GGATAAAATCCTAAGTC-AAAGATAAGGAATCGATCA
** * * *
31597 GGATAACATCGCAAATCAAAATTACACTCAGAGGTCTTAAGAATCAAACCTGGAGGTCTTATAGA
64 GGATAACATCGCAAATCAAAATTATGCCCAGAGGTCTTAA-AATCAAACCTGAAGGTCTTACAGA
31662 ATC
128 ATC
*
31665 ATG-CTCGGAGGTCTTACAGAATCGACTGGAATAAAATCCTAAGTCGAAAGATAAGGAATCGATC
1 ATGTC-CGGAGGTCTTACAGAATTGACTGG-ATAAAATCCTAAGTC-AAAGATAAGGAATCGATC
* * * ***
31729 AGGATAACATCGCGAATCGAAATTATGCCCCGAGGTCTTAGAAATC-GTGCTCGAAGGTCTTACA
63 AGGATAACATCGCAAATCAAAATTATGCCCAGAGGTCTTA-AAATCAAACCT-GAAGGTCTTACA
31793 GAATC
126 GAATC
* * * * *
31798 ATGTCCGGAGGTCTTACAGAATTGACTCGGGTAACATTGC-AAGTCAAAAATAAAGAATCGATCA
1 ATGTCCGGAGGTCTTACAGAATTGACT-GGATAA-AATCCTAAGTCAAAGATAAGGAATCGATCA
* * * *
31862 GGACAACACCACAAATCAAAATTATGCCTAGAGGTCTTACAAATC
64 GGATAACATCGCAAATCAAAATTATGCCCAGAGGTCTTA-AAATC
31907 TCAAAATCTT
Statistics
Matches: 203, Mismatches: 32, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
132 59 0.29
133 137 0.67
134 7 0.03
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.23
Consensus pattern (130 bp):
ATGTCCGGAGGTCTTACAGAATTGACTGGATAAAATCCTAAGTCAAAGATAAGGAATCGATCAGG
ATAACATCGCAAATCAAAATTATGCCCAGAGGTCTTAAAATCAAACCTGAAGGTCTTACAGAATC
Found at i:32094 original size:13 final size:15
Alignment explanation
Indices: 32076--32107 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
32066 AATCTTTAAA
32076 TTTTG-AAAT-TTTT
1 TTTTGAAAATGTTTT
32089 TTTTGAAAATGTTTT
1 TTTTGAAAATGTTTT
32104 TTTT
1 TTTT
32108 TTTCAATCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 5 0.29
14 4 0.24
15 8 0.47
ACGTcount: A:0.22, C:0.00, G:0.09, T:0.69
Consensus pattern (15 bp):
TTTTGAAAATGTTTT
Found at i:32450 original size:41 final size:40
Alignment explanation
Indices: 32366--32460 Score: 104
Period size: 41 Copynumber: 2.3 Consensus size: 40
32356 GTGCAAATGC
* * *
32366 AAGTGATGCAAATGCAAATGTCTTTCTTGTAGTACAGATAT
1 AAGTGATGCAAATGCAAATATCTTTCATGTAGCACAGA-AT
32407 AAGTGATGCAAATGCAAATATCCCTTTCATG-ATGCACAG-AT
1 AAGTGATGCAAATGCAAATAT--CTTTCATGTA-GCACAGAAT
*
32448 AAGCGATGCAAAT
1 AAGTGATGCAAAT
32461 TTGAATATCT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
41 34 0.72
42 1 0.02
43 12 0.26
ACGTcount: A:0.37, C:0.16, G:0.19, T:0.28
Consensus pattern (40 bp):
AAGTGATGCAAATGCAAATATCTTTCATGTAGCACAGAAT
Found at i:32682 original size:33 final size:32
Alignment explanation
Indices: 32603--32945 Score: 326
Period size: 33 Copynumber: 10.5 Consensus size: 32
32593 TTGGGGCTAA
* *
32603 ATAAACTTGGCTTAAAT-TT-ATTGAAGGGCAG
1 ATAAACTGGGCTTAAATCTTCATTGAA-GCCAG
*
32634 CTAAACTGGGCTTAAATCTTCATTTGAAGCCAG
1 ATAAACTGGGCTTAAATCTTCA-TTGAAGCCAG
* * * *
32667 ATAAACTAGGTTTAAAACCTCATT-AATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAA--GCCAG
* *
32700 ATGAACTGGGCTTAAAGCTTCATT-AATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAA--GCCAG
32733 ATAAACTGGGCTTAAAGT-TTCATTGAGAGCCAG
1 ATAAACTGGGCTTAAA-TCTTCATTGA-AGCCAG
* *
32766 ATAAACTGGGCTTAAAGCTTCATT-AATGGCTAG
1 ATAAACTGGGCTTAAATCTTCATTGAA--GCCAG
* * *
32799 ATAAACTAGGCTTAAAT-ATCATTGATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGA-AGCCAG
*
32831 ATAAACTGGGCTTAAATCTT-ATTTGAGGCCAG
1 ATAAACTGGGCTTAAATCTTCA-TTGAAGCCAG
* *
32863 ATAAACTGGGCTTAAATTTTCATTGATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGA-AGCCAG
*
32896 ATAAACTGGGCTTAAAACTTCATT-AATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAA--GCCAG
32929 ATAAACTGGGCTTAAAT
1 ATAAACTGGGCTTAAAT
32946 TTTATTTATT
Statistics
Matches: 264, Mismatches: 29, Indels: 36
0.80 0.09 0.11
Matches are distributed among these distances:
31 18 0.07
32 61 0.23
33 178 0.67
34 6 0.02
35 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.29
Consensus pattern (32 bp):
ATAAACTGGGCTTAAATCTTCATTGAAGCCAG
Found at i:32714 original size:66 final size:65
Alignment explanation
Indices: 32603--32944 Score: 408
Period size: 66 Copynumber: 5.2 Consensus size: 65
32593 TTGGGGCTAA
* * * * *
32603 ATAAACTTGGCTT-AAATTT-ATTGAAGGGCAGCTAAACTGGGCTTAAATCTTCATTTGAA-GCC
1 ATAAACTGGGCTTAAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCA-TT-AAGGCC
32665 AG
64 AG
* * ** * *
32667 ATAAACTAGGTTTAAAACCTCATTAATGGCCAGATGAACTGGGCTTAAAGCTTCATTAATGGCCA
1 ATAAACTGGGCTTAAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTAA-GGCCA
32732 G
65 G
* *
32733 ATAAACTGGGCTTAAAGTTTCATTGA-GAGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCT
1 ATAAACTGGGCTTAAAATTTCATTGATG-GCCAGATAAACTGGGCTTAAAGCTTCATTAA-GGCC
32797 AG
64 AG
* * * *
32799 ATAAACTAGGCTT-AAATATCATTGATGGCCAGATAAACTGGGCTTAAATCTT-ATTTGAGGCCA
1 ATAAACTGGGCTTAAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCA-TTAAGGCCA
32862 G
65 G
* *
32863 ATAAACTGGGCTTAAATTTTCATTGATGGCCAGATAAACTGGGCTTAAAACTTCATTAATGGCCA
1 ATAAACTGGGCTTAAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTAA-GGCCA
32928 G
65 G
32929 ATAAACTGGGCTTAAA
1 ATAAACTGGGCTTAAA
32945 TTTTATTTAT
Statistics
Matches: 239, Mismatches: 29, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
64 31 0.13
65 83 0.35
66 125 0.52
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.29
Consensus pattern (65 bp):
ATAAACTGGGCTTAAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTAAGGCCAG
Done.