Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168099.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_345, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 32804
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Found at i:3008 original size:412 final size:412
Alignment explanation
Indices: 2241--3068 Score: 1334
Period size: 412 Copynumber: 2.0 Consensus size: 412
2231 CCTTATCAAA
2241 CCTCGAGAACTCACACCCCCTTAAAGAGCATATGAGATTTTACAGCTTGCTGCCAGTAGCCATTA
1 CCTCGAGAACTCACACCCCCTTAAAGAGCATATGAGATTTTACAGCTTGCTGCCAGTAGCCATTA
* * *
2306 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAG
66 AAGTGTCTAAAATGGGGACACTTTTGTCAAATGGTCACAAAATCCTATACACTTCAAGTTTTTAG
* * *
2371 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAA
131 CTGAATTTTTTTGTGCAAGCCAACAAAAATAAAAGGATCACATCTACCAAGTGTGGGGCCAAAAA
* * * *
2436 TCCTTCTGAAAAAATTTTTAGAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
196 TCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* *
2501 AAACGAGTCGTCTTGCCATGAAACTTCACATGGAGGCTTAAGGGACCATTGTATGAATTTACAAG
261 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTCTATGAATTTACAAG
* * *
2566 CCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATC
326 CCATAAAAATGGCATTGGCACGGCAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATC
*
2631 GATCCACGTATTGCACATCCCG
391 GATCCACGGATTGCACATCCCG
** * * *
2653 CCTCGAGAACTCACACCTTCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
1 CCTCGAGAACTCACACCCCCTTAAAGAGCATATGAGATTTTACA-GCTTGCTGCCAGTAGCCATT
* *
2718 AAAGTGTCTAAAATGGGGACACTTTTGTCAAATGTTCACAAAATCCTATACACTTCGAGTTTTTA
65 AAAGTGTCTAAAATGGGGACACTTTTGTCAAATGGTCACAAAATCCTATACACTTCAAGTTTTTA
*
2783 GCTGAATTTTTTTGTGCAAGCCAACAAAAA-AAAAGGATCACGTCTACCAAGTGTGGGGCCAAAA
130 GCTGAATTTTTTTGTGCAAGCCAACAAAAATAAAAGGATCACATCTACCAAGTGTGGGGCCAAAA
* * *
2847 CTCCTTTTGAAAAAATTTTAAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAG
195 ATCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG
* *
2912 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACTATTCTATGAATTTACAA
260 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTCTATGAATTTACAA
* *
2977 GCCATAAAAATGGCATTGGCACGGTAGAAATATGAAGATGAGCCTAAACCCACCTATCACCCTAT
325 GCCATAAAAATGGCATTGGCACGGCAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTAT
* * *
3042 CGATCCATGGCTTGCGCATCCCG
390 CGATCCACGGATTGCACATCCCG
3065 CCTC
1 CCTC
3069 TCTGGTCGGC
Statistics
Matches: 381, Mismatches: 34, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
412 273 0.72
413 108 0.28
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (412 bp):
CCTCGAGAACTCACACCCCCTTAAAGAGCATATGAGATTTTACAGCTTGCTGCCAGTAGCCATTA
AAGTGTCTAAAATGGGGACACTTTTGTCAAATGGTCACAAAATCCTATACACTTCAAGTTTTTAG
CTGAATTTTTTTGTGCAAGCCAACAAAAATAAAAGGATCACATCTACCAAGTGTGGGGCCAAAAA
TCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTCTATGAATTTACAAG
CCATAAAAATGGCATTGGCACGGCAGAAATATGAAGATGAGCCTAAACCCACCTACCACCCTATC
GATCCACGGATTGCACATCCCG
Found at i:5924 original size:26 final size:26
Alignment explanation
Indices: 5872--5924 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
5862 GTTGACTTAT
*
5872 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
5898 GCATATGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
5924 G
1 G
5925 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:7129 original size:894 final size:893
Alignment explanation
Indices: 4947--8553 Score: 4572
Period size: 894 Copynumber: 4.1 Consensus size: 893
4937 AGGATCGACA
* * *
4947 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCGTACAGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * * * * *
5012 CATTCCTAGTGTAAGATCGGACCAGACTGAGGGTTACGGGTGCACATGCTAGGCTTGGGCATGTG
66 CATTCCCAATGTAAGATCAGACTAGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTG
* * * * *
5077 CTGGTGCCGCATTTTTTTTCGCCCGGCGCACCATCGCCGGAGTATCACCAGAGAACCTGACCGAT
131 CTGGTGCCGC-TTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATC-GCGGAGAACCTGACCGAC
* * *
5142 GGCATTGGGGTTCCGGCGATT-GGGGGGCGGGGGGGTGTGCGCAGATGATGTGCAATAGGTGCTG
194 GACATTGGGGTTCCGGCGATTGGGGGGGC-GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTG
* * *
5206 GTACTTGGCCCTTATATTGGCCCGCTATCTCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
258 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
5271 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
323 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
5336 TTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCAAGCCAAAA
388 TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAA
* *
5401 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAA
453 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTAAAAAAA
*** * * *
5466 ATCTTGAACTGTAAAAAGTTCTGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAAC
517 ATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * * *
5531 TTCACATGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCATAGA
582 TTCACAAGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
* * *
5596 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGCGCATCGCACC
647 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACC
* * * * * * ** * * * * *
5661 TCTTTGATCCAGCATTGTGCTCGCCCACCCTTTCATTTTGTCAGTTGGCTTAGGCATACAGAGTC
712 TCTCT-AGCCAGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * ** * * * * * * *
5726 CATTTCCAATCTAAAATTGGACCAAATCAAGGGTTGCAGTTGTAGGATCGGTAGCACGCAGGGGG
776 CATTCCCAGTCTAGAA-CGAACCGGACCAAGGGTTACAGTAGCAGGATCAGCAGCACGCAGGAGG
* * * *
5791 GACCCGACCGATCCCTGGCTTGCGCATCCTGCCACTCTGGCCGACTAAGCGCTC
840 GACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCC
* **
5845 GCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
** **
5910 CATTCCCAATGTAAGATCAGACTAGATTGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCA----
66 CATTCCCAATGTAAGATCAGACTAGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTG
* *
5971 ----------TTTTTTTT-GCCCGGGGCACCATCGCCGGAGCATCGACGGAGAACCTGATCGGCG
131 CTGGTGCCGCTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCG-CGGAGAACCTGACCGACG
* * * * * *
6025 GCATCGGGGTTCCGACGCTTGGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGG
195 ACATTGGGGTTCCGGCGATTGGGGGGG-CGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGG
*
6090 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGA
259 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
** ** *
6155 GCATTTGAGATTTTACAGGTTTGCTGTTAGTAGCCATTAAAGCATCTAAAATGGGGACACTTTTT
324 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
6220 TCAAATGGTCACAAAATGCTGTACACTTTGAGTTTTTAGCTGAATTGTTTTGCGCATGCCAACAA
389 TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAA
* * *
6285 AAATACAAGGATGATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAGAATTTAAAAAAAAT
454 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAAT
6350 CCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
519 CCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * *
6415 CACATGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAG
584 CACAAGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
* * * *
6480 AAATATGAAGATGTGCTTAAACCCACCTACCACCCTATTGATCGACGGCTTGCGCATCCCGCCTC
649 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTC
* * * * * *
6545 TCTAGCAAGCGTAGTGCCCGCCCGCCCGCTTGTTCCGTCGGTTGGCTTAGGCATATGGACTTCGT
714 TCTAGCCAGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
6610 TCCCAGTCTATGAACGAATCGGACCAAGGGTTACA-TAGCAAGATCAGTAGCATGCAGCAGGGAC
779 TCCCAGTCTA-GAACGAACCGGACCAAGGGTTACAGTAGCAGGATCAGCAGCACGCAGGAGGGAC
* * * * * * **
6674 CC-AGCCAATTCCTGACTTGTGCATCTTGCCCCTCTGGCCGGTTGAGCGCCC
843 CCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCC
* **
6725 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* *
6790 CATTCCCAATGTAAGATCAGATTAGACCGAGGGTTATGGGTGCACATGCTGGGCTCGGGCATGTG
66 CATTCCCAATGTAAGATCAGACTAGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTG
* * *
6855 CTGGTGCCGCTTTTTTTTTCGCCCGAGGCACCATCACCGGAGCATCGTCGGAGAACCTAACCGAC
131 CTGGTGCCGC-TTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCG-CGGAGAACCTGACCGAC
6920 GACATTGGGGTT-CGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGG
194 GACATTGGGGTTCCGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGG
* *
6984 TACTTGGCCCTTATATTGGCCCCCTATCCCTCTTTAAACCTCGAGAACTCACACCCCCTTAAAGA
259 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
7049 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTT
324 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
7114 TGAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAA
389 TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAA
** * ***
7179 AAATACAAGGATCACGTCTACCAAGTTTGGCACCAAAACTCTTTCTGAAAAAATTTTTGAAAAAT
454 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAAT
* ** *
7244 CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTT
519 CCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
7309 CACAAGAAGGCTTAAGCGACCATTTTATGAATTTACAAGCCAT-AAAATGGCATTGGCATGGCAG
584 CACAAGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
* * * *
7373 AAATATGTAGATGTGCCTAAACCCACCTACCA-CCTGATCGATCCACGACTTGCGCATCCCGCAT
649 AAATATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCCACGGCTTGCGCATCCCACCT
* * * * * * * *
7437 CTCTGGCCGGCGTAATGCCCGCCCGCTCACTCGTTTCATCGGTTGGCTTATGCATATGGAGTTCA
713 CTCTAGCCAGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
** * * * ** **
7502 TTCCCAGTCTCAGATTGGACCGGACCGAGAGTTACAGTAGCAGGATTGGCAGCACATA-GAGGGG
778 TTCCCAGTCT-AGAACGAACCGGACCAAGGGTTACAGTAGCAGGATCAGCAGCACGCAGGA-GGG
* * *
7566 TACCCGAGCGATCCCCGGCTTGCACATCCTGCCCCTCTGGTCGACTGAGCGCCC
841 -ACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCC
** * * * *
7620 GCACGCTAATTTCGTGGGTTGACTTAGGAAAACGGAGTTCATTCTCAGTCAAAGCATACAGAGTT
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
* * * * *
7685 CATTCCCAGA-GTAAGATCGGACTGGACCGAGGGTTGCGGGTGCACATGTTGGGCTTGGGCATGT
66 CATTCCCA-ATGTAAGATCAGACTAGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGT
* *
7749 GCTGGTGTCGCATTTTTTTCGCCCGGGGCACCAT--------CA-C-CGGAGAACCTGACCGAC-
130 GCTGGTGCCGCTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGCGGAGAACCTGACCGACG
** * * * * *
7803 AGCATTGGGGTTTTGGTGATTAGGGGGTGG-GGGTGGTGTGAGCACATGAT-TATCGATGGGTGC
195 A-CATTGGGGTTCCGGCGATT-GGGGG-GGCGGGGGGTGTGCGCACATGATGT-GCAATGGGTGC
7866 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
256 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * *
7931 AGAGCATTTGAAATTTTACAGGTTTGCTCCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTT
321 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
** *
7996 TTTTCAAATGAACACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTGTTTTTGTGCATGCCA
386 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTG-TTTTGTGCATGCCA
** * **
8061 AAAAAAATTGAAGGATCACGTCTACCAAGTTTGGGGCCAGAACTCCTTCTGAAAAAATTTTCAAA
450 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAA
*
8126 AAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
515 AAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
8191 ACTTCACAAGAAGGCTTAAGCGACCATTCTATGAATTTACAAGCCATAAAAATGGCAATGGCATG
580 ACTTCACAAGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
** * **
8256 GCAGAAATATGAAGATGTGCCTAAACTAACCTACTACCCTATCGATCCACGGCTTGCTTATCCCA
645 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCA
* *
8321 CCTCTCTAG-CAGTTGTAGTGCCCGCACGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
710 CCTCTCTAGCCAG-CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * ** * *
8385 TTCATTCCCAGTCTAAGATC-AGACTGCACCGAGGGTTGTAGTAGCAGGATCAGCAGTACGTAGG
774 TTCATTCCCAGTCT-AGAACGA-ACCGGACCAAGGGTTACAGTAGCAGGATCAGCAGCACGCAGG
* * * * * * * *
8449 GGGGACCCGACCGATCCCCGGCTTGTGCATTCTGCCCTTCCGGTCGGCTGAGCACCC
837 AGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCC
* * *
8506 GTACGCTCGTTTTGTGTGTTGACTTAGGCATACGGAGTTCATTCCCAG
1 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
8554 CATAAGATCG
Statistics
Matches: 2360, Mismatches: 310, Indels: 90
0.86 0.11 0.03
Matches are distributed among these distances:
879 1 0.00
880 181 0.08
881 66 0.03
882 249 0.11
883 299 0.13
884 8 0.00
885 201 0.09
886 267 0.11
887 171 0.07
888 4 0.00
892 3 0.00
893 156 0.07
894 410 0.17
895 182 0.08
896 51 0.02
898 111 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTT
CATTCCCAATGTAAGATCAGACTAGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTG
CTGGTGCCGCTTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGCGGAGAACCTGACCGACGA
CATTGGGGTTCCGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCC
CAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CAAGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCACCTCTC
TAGCCAGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAGAACGAACCGGACCAAGGGTTACAGTAGCAGGATCAGCAGCACGCAGGAGGGACCCG
ACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCC
Found at i:10719 original size:895 final size:894
Alignment explanation
Indices: 8620--11977 Score: 4163
Period size: 895 Copynumber: 3.7 Consensus size: 894
8610 CTGGTCTTGT
* * * *
8620 CATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACGGTAGAA
1 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
*
8685 ATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
66 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
* * * *
8750 TGGCCGACGTAGTGC-C-T------GCT-ATTTCATTGGTTGGCTTAGGCATGCGGAGTTCATTC
131 TAGCCGACGTAGTGCACGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * *
8806 TCAGTCTAAGATCAGATCAGACCGAGGGTTG-AGGTAGCAAGATTGGCAGCATGTAGAGGGGACC
196 CCAGTCTAAGATCAGACCAGACCGAGGGTTGTA-GTAGCAGGATCGGCAGCACGTAGAGGGGACC
* * * * * * * * * *
8870 CGGTCGATCCTTGGCTTGCACATCTTGCCCTTCTGGCC-AGCTGAGGGCCCGCATGTTCGTTTCA
260 CGCT-GATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGA-CTGAGTGCCC-CACGCTCATTTCG
* * * * **
8934 TGGGTTGACTTAGGCATATGAAGTTCATTCCCAATCTAAGCATACG-GAGTTCATTCCAAGTTTA
322 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-GAGAGTTCATTCCCAGCGTA
* * * ** * * *
8998 AAATCGGAGT-GGACCGAGAGTTGGGGGTGCACATGCTGGGCTTGGGCATGAGCTGGTGCCATTT
386 AGATCGGA-TCAGACCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA-TA
* * *
9062 TTTTTTTTCA-CTCGAGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGTGGCATTGAGG
449 TTTTTTTTCACCT-GGGGCACCATCGCCGGAGAATCGCCGGAGAACCTGACCGGCGGCATTGAGG
* * * * *
9126 TTCCGGTGA-TAG-GGGGGACGGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGC-ACTT
513 TTCCAGCGATTGGTGGGGGAC---GGGGGTGTGCGCACATGATGTGCGATGGGTGCT-ACTACTT
*
9188 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
574 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
*
9253 TGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
639 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* * * *
9318 TGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTTTTTTGCATGTCAAGAAAAATA
704 TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATA
9383 CAAGCATCACGTCTACCAAGTTTGGGCCCAAAACTCCTTCTG-AAAAATTTTTAAAAAAATCCCG
769 CAAG-ATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCTGAAAAAATTTTTAAAAAAATCCCG
*
9447 AACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
832 AACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
9510 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAA
1 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
* *
9575 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCTCGCCTCTC
66 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
* * * * * * * *
9640 TGGCCGACGTAGTGCCCGCCCGTCCGTTTGTTTTATCGGTTGGCTTATGCATACGGAGTTCATTC
131 TAGCCGACGTAGTGCACGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
** * * * * * * * * ** * *
9705 TTAGTGTAAGATCGGACCGGACCAAGGGTTATGGCAGTAGGATCGATAGCACATA-AGGGGACAG
196 CCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGTAGCAGGATCGGCAGCACGTAGAGGGGAC-C
* * * **
9769 GGC-GATCCTCGGCTTACGCATCCTGCCCCTTTGGCCGGTTGAGTGCCCACACGCTCATTTCGTG
260 CGCTGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGTGCCC-CACGCTCATTTCGTG
* *
9833 GGTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAAGCATAGAGAGTTCATTCCCAGTGTAAGA
324 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGAGAGTTCATTCCCAGCGTAAGA
* * * * *
9898 TCAGATCAGACTGAGGGTTGCAGGTGCACATGCACGGGCTCGGGCATGTGTTGGTGCCGTATTTT
389 TCGGATCAGACCGAGGGTTGCAGGTGCACATGC-TGGGCTCGGGCATGTGCTGGTGCCATATTTT
* * * * * * *
9963 TTTTCACCTAGGGCACCATCGTCGGAGAATCACCAGAGAACCTAATCGACGGCATTGAGGTTCCA
453 TTTTCACCTGGGGCACCATCGCCGGAGAATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCA
*
10028 GCAATT-GTGGGGGACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTACTACTTGGCCCTTAT
518 GCGATTGGTGGGGGACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTACTACTTGGCCCTTAT
* * ** * *
10092 ATTGGTCCCCTATCCCTCATCAAACTTTGAGAACTCACACCCCCATAAATAGCATTTGAGATTTT
583 ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
** *
10157 ATTGGTTTGCTGCCAGTAGCCATTGAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
648 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
10222 AATCCTT-TACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACTAGATCA
713 AAT-CTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGATCA
* * * * *
10286 TGCCTACCAAGATTGGTGCCAAAACTCTTTTTGAAAAAATTTTT-AAAAAATCCCGAACCATAAA
777 CGTCTACCAAGTTTGG-GCCAAAACTCCTTCTGAAAAAATTTTTAAAAAAATCCCGAACCATAAA
* *
10350 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
841 AAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
10404 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCATGGCAGAA
1 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
* * *
10469 ATATGAAGATGTGCCTACACCCACCTACCA-CCTATCGATCCACGGCTTGCGCTTCCCGTCTCTC
66 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
*
10533 TAGCCGACTTAGTGCACGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
131 TAGCCGACGTAGTGCACGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
10598 CCAGTCTAAGATTAGACCAGACCGAGGGTTGCAGTAGTAGGATTGGCAGCATGTAGGTGGGGACC
196 CCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGTAGCAGGATCGGCAGCACGTA-GAGGGGACC
* * *
10663 CAGCTGATCCACGGCTTGCGCATCCTGCCCCTCTGGCCGATTGAGTGCCTCACGCTCATTTCGTG
260 C-GCTGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGTGCCCCACGCTCATTTCGTG
* * * * *
10728 GGTTGACTTAAGCATACAGAGTTCATTCCCGGTCTAAGCATATAGAGTCCATTCCCAGCGTAAGA
324 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGAGAGTTCATTCCCAGCGTAAGA
* * * *
10793 TCGGACCAGACCAAGGGTTGCAGCTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCATATTGTT
389 TCGGATCAGACCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATT-TT
** * * * * * * *
10858 TTTTTGCCTGGGGCACCATCACCGGAGCATCGTCGGAGAACTTGACCGGCGGTATTGGGGTTTC-
453 TTTTCACCTGGGGCACCATCGCCGGAGAATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCA
** ** *
10922 GACGATTGGGGGTGCGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACATGGCC
518 G-CGATT---GGTG-GGGGACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTACTACTTGGCC
* * *
10987 CTTATATTGGCCCCGTATCCTTCATCAAACCTCAAGAACTCACACTCCCTTAAAGAGCATTTGAG
578 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * *
11052 ATTTTATAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCCATTGGT
643 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
*
11117 CACAAAATCTTGTACACTTCGA-TCTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
708 CACAAAATCTTGTACACTTCGAGT-TTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * *
11181 GGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTTGAAAAAATCCCAAAC
772 -GATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAAATCCCGAAC
* *
11246 CGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
835 CATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * * *
11306 CAAGAAGGCTTAAGCGACCATTCTATGAATTTACAAGGCATAAAAATGGCAATGGCATGGCAGAA
1 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
** * ** *
11371 ATATGAAGATGTGCCTAAACTAACCTACTACCCTATCGATCCACGGCTTGCTTATCCCACCTCTC
66 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
* * * *
11436 TAGCAGGCGTAGTGCCCG-CACGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
131 TAGCCGACGTAGTGCACGTC-CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * *
11500 CCCAGTCTAAGATCA-AACTGCACCGAGGGTTGTAGTAGCAGGATCAGCAGTACGTAGGGGGGAC
195 CCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGTAGTAGCAGGATCGGCAGCACGTAGAGGGGAC
* * * * * * * * * * * * *
11564 CCGACCGATCCCCGACTTGTGCATTCTGCCCTTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTTG
259 CCG-CTGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGTGCCC-CACGCTCATTTCG
* * *
11629 TGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGCATAA
322 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGAGAGTTCATTCCCAGCGTAA
* * * *
11694 GATCGGA-CTAGACTGAGGGTTAC-GAGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACAT
387 GATCGGATC-AGACCGAGGGTTGCAG-GTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATAT
* * * * **
11757 TTTTTTTCGCCCGGGGCCCCATCGCCAGA-ACATCGTTGGAGAACCTGACCGGCGGCATT-AGGG
450 TTTTTTTCACCTGGGGCACCATCGCCGGAGA-ATCGCCGGAGAACCTGACCGGCGGCATTGA-GG
* ** *
11820 TT-CAGGCGATTGGGGGGCGGGTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGG
513 TTCCA-GCGATTGGTGGG-GGACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTACTACTTGG
* *
11884 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAAACCCTCTTAAAGAGCATTTG
576 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
11949 AGATTTTACAGGTTTGCTGCCAGTAGCCA
641 AGATTTTACAGGTTTGCTGCCAGTAGCCA
11978 GAGCATTCTT
Statistics
Matches: 2130, Mismatches: 288, Indels: 91
0.85 0.11 0.04
Matches are distributed among these distances:
890 139 0.07
891 1 0.00
893 125 0.06
894 220 0.10
895 391 0.18
896 45 0.02
897 186 0.09
898 41 0.02
899 210 0.10
900 217 0.10
901 41 0.02
902 263 0.12
903 251 0.12
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
TAGCCGACGTAGTGCACGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGTAGCAGGATCGGCAGCACGTAGAGGGGACCC
GCTGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGTGCCCCACGCTCATTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAGAGAGTTCATTCCCAGCGTAAGATC
GGATCAGACCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTTT
TCACCTGGGGCACCATCGCCGGAGAATCGCCGGAGAACCTGACCGGCGGCATTGAGGTTCCAGCG
ATTGGTGGGGGACGGGGGTGTGCGCACATGATGTGCGATGGGTGCTACTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGATCACGTC
TACCAAGTTTGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAAATCCCGAACCATAAAAAGTT
TTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
Found at i:10791 original size:26 final size:26
Alignment explanation
Indices: 10736--10785 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
10726 TGGGTTGACT
* *
10736 TAAGCATACAGAGTTCATTCCCGGTC
1 TAAGCATACAGAGTCCATTCCCAGTC
*
10762 TAAGCATATAGAGTCCATTCCCAG
1 TAAGCATACAGAGTCCATTCCCAG
10786 CGTAAGATCG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (26 bp):
TAAGCATACAGAGTCCATTCCCAGTC
Found at i:12864 original size:12 final size:11
Alignment explanation
Indices: 12849--12878 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
12839 TTAAAACAAC
12849 AAAAAAAAAGA
1 AAAAAAAAAGA
12860 GAAAAAAAAAGA
1 -AAAAAAAAAGA
12872 AAAAAAA
1 AAAAAAA
12879 TTGGTTATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:14192 original size:33 final size:33
Alignment explanation
Indices: 14149--14492 Score: 384
Period size: 33 Copynumber: 10.5 Consensus size: 33
14139 ATAAAATAAA
14149 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* * *
14182 TTTTAAGCCCAGTTTATCTGGCCATCAATGAAA
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
*
14215 ATTTAAGCCCAGTTTATCTGGCC-TCAAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCAT-TAATGAAG
* *
14248 ATTTAAGCCCAGTTTATCTGGCCATCAATG-AT
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* *
14280 ATTTAAGCCTAGTTTATCTAGCCATTAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* *
14313 CTTTAAGCCCAGTTTATCTGGCTC-TCAATGAA-
1 ATTTAAGCCCAGTTTATCTGGC-CATTAATGAAG
14345 ACTTTAAGCCCAGTTTATCTGGCCATTAATGAAG
1 A-TTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* * * *
14379 CTTTAAGCCCAGTTCATCTGGCCATCAAT-ATGG
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGA-AG
* * *
14412 TTTTAAACCTAGTTTATCTGG-C-TTCAAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATT--AATGAAG
*
14445 ATTTAAGCCCAGTTTAGCTGGCC-TTCAAT-AA-
1 ATTTAAGCCCAGTTTATCTGGCCATT-AATGAAG
*
14476 ATTTAAGCCAAGTTTAT
1 ATTTAAGCCCAGTTTAT
14493 TTAGCCCCAA
Statistics
Matches: 264, Mismatches: 35, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
31 16 0.06
32 34 0.13
33 208 0.79
34 6 0.02
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.34
Consensus pattern (33 bp):
ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
Found at i:14223 original size:66 final size:66
Alignment explanation
Indices: 14146--14492 Score: 440
Period size: 66 Copynumber: 5.3 Consensus size: 66
14136 AAAATAAAAT
*
14146 AAAATTTAAGCCCAGTTTATCTGGCCATTAATGAAGTTTTAAGCCCAGTTTATCTGGCCATCAAT
1 AAAATTTAAGCCCAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAAT
14211 G
66 G
*
14212 AAAATTTAAGCCCAGTTTATCTGGCC-TCAAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAA
1 AAAATTTAAGCCCAGTTTATCTGGCCAT-TAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAA
14276 TG
65 TG
* * * *
14278 -ATATTTAAGCCTAGTTTATCTAGCCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCTC-TCAA
1 AAAATTTAAGCCCAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGC-CATCAA
14341 TG
65 TG
* * *
14343 AAACTTTAAGCCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTCATCTGGCCATCAAT
1 AAAATTTAAGCCCAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAAT
14408 -
66 G
*** * * * *
14408 ATGGTTTTAAACCTAGTTTATCTGG-C-TTCAAATGAAGATTTAAGCCCAGTTTAGCTGGCCTTC
1 A-AAATTTAAGCCCAGTTTATCTGGCCATT--AATGAAGATTTAAGCCCAGTTTATCTGGCCATC
14471 AAT-
63 AATG
*
14474 -AAATTTAAGCCAAGTTTAT
1 AAAATTTAAGCCCAGTTTAT
14493 TTAGCCCCAA
Statistics
Matches: 247, Mismatches: 26, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
64 16 0.06
65 60 0.24
66 171 0.69
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (66 bp):
AAAATTTAAGCCCAGTTTATCTGGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAAT
G
Found at i:14384 original size:131 final size:129
Alignment explanation
Indices: 14149--14492 Score: 455
Period size: 131 Copynumber: 2.6 Consensus size: 129
14139 ATAAAATAAA
* *
14149 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAGTTTTAAGCCCAGTTTATCTGGCCATCAATGAA
1 ATTTAAGCCTAGTTTATCT-GCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATG-A
*
14214 AATTTAAGCCCAGTTTATCTGGCCTCAAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATGA
64 AATTTAAGCCCAGTTTATCTGGCCTCAAATGAAGATTTAAGCCCAGTTCATCTGGCCATCAAT-A
14279 T-
128 TG
*
14280 ATTTAAGCCTAGTTTATCTAGCCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCTC-TCAATGA
1 ATTTAAGCCTAGTTTATCT-GCCATTAATGAAGATTTAAGCCCAGTTTATCTGGC-CATCAATGA
* *
14344 AACTTTAAGCCCAGTTTATCTGGCCAT-TAATGAAGCTTTAAGCCCAGTTCATCTGGCCATCAAT
64 AA-TTTAAGCCCAGTTTATCTGGCC-TCAAATGAAGATTTAAGCCCAGTTCATCTGGCCATCAAT
14408 ATGG
127 AT-G
* * * * *
14412 TTTTAAACCTAGTTTATCTGGC-TTCAAATGAAGATTTAAGCCCAGTTTAGCTGGCCTTCAAT-A
1 ATTTAAGCCTAGTTTATCTGCCATT--AATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATGA
*
14475 AATTTAAGCCAAGTTTAT
64 AATTTAAGCCCAGTTTAT
14493 TTAGCCCCAA
Statistics
Matches: 193, Mismatches: 12, Indels: 17
0.87 0.05 0.08
Matches are distributed among these distances:
130 22 0.11
131 120 0.62
132 51 0.26
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.34
Consensus pattern (129 bp):
ATTTAAGCCTAGTTTATCTGCCATTAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATGAAA
TTTAAGCCCAGTTTATCTGGCCTCAAATGAAGATTTAAGCCCAGTTCATCTGGCCATCAATATG
Found at i:14976 original size:14 final size:13
Alignment explanation
Indices: 14957--14986 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
14947 CTGATTGAAA
14957 AAAAAAACATTTTC
1 AAAAAAA-ATTTTC
14971 AAAAAAAATTTTC
1 AAAAAAAATTTTC
14984 AAA
1 AAA
14987 TTTTAAAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (13 bp):
AAAAAAAATTTTC
Found at i:15276 original size:23 final size:22
Alignment explanation
Indices: 15244--15306 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
15234 ACCCGAGTCA
*
15244 ATTCTGTAAGACCTCCAGGCATG
1 ATTCTATAAGACCTCC-GGCATG
*
15267 ATTCTATAAGACCTTCGAGCATG
1 ATTCTATAAGACCTCCG-GCATG
* *
15290 ATT-TCTAAGACTTCCGG
1 ATTCTATAAGACCTCCGG
15307 GCATAATTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
21 1 0.03
22 11 0.32
23 22 0.65
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (22 bp):
ATTCTATAAGACCTCCGGCATG
Found at i:15310 original size:22 final size:22
Alignment explanation
Indices: 15250--15315 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
15240 GTCAATTCTG
* *
15250 TAAGACCTCCAGGCATGATTCTA
1 TAAGACTTCCGGGCATGATT-TA
* *
15273 TAAGACCTT-CGAGCATGATTTC
1 TAAGA-CTTCCGGGCATGATTTA
*
15295 TAAGACTTCCGGGCATAATTT
1 TAAGACTTCCGGGCATGATTT
15316 TGATTCGCGA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
21 3 0.09
22 16 0.46
23 14 0.40
24 2 0.06
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (22 bp):
TAAGACTTCCGGGCATGATTTA
Found at i:15404 original size:133 final size:133
Alignment explanation
Indices: 15174--15527 Score: 448
Period size: 133 Copynumber: 2.7 Consensus size: 133
15164 AAGACCTATA
* * * * * *
15174 GGCATAATTTCGATTTGCGGTGTTGTCTCGATCGGTT-CTT-TATTTCTGACTTGCGATGTTA-C
1 GGCATAATTTTGATTCGCGGTGTTATCTCGATCGATTCCTTATCTTTC-GACTTACGATGTTATC
* * * * *
15236 CCGAGTCAATTCTGTAAGACCTCCAGGCATGATTCTATAAGACCTTC-GAGCATGATT-TCTAAG
65 CC-AGTCGATTTTGTAAGACCTTCGGGCATGATTCTATAAGACCTCCAG-GCATGATTAT-TAAG
*
15299 ACTTCCG
127 ACCTCCG
* * * *
15306 GGCATAATTTTGATTCGCGATGTTATCTTGATCGATTCCTTATCTTTCGACTTACGATTTTATTC
1 GGCATAATTTTGATTCGCGGTGTTATCTCGATCGATTCCTTATCTTTCGACTTACGATGTTATCC
*
15371 CAGTCGATTTTGTAAGACCTTCGGGCATGATTCTATAAGACCTCCAGGTATGATTATTAAGACCT
66 CAGTCGATTTTGTAAGACCTTCGGGCATGATTCTATAAGACCTCCAGGCATGATTATTAAGACCT
15436 CCG
131 CCG
* * * *
15439 AGCGTAATTTTGATTCACGGTGTTATCTCGATCGATTCCTTATCTTTTGACTTACGATGTTATCC
1 GGCATAATTTTGATTCGCGGTGTTATCTCGATCGATTCCTTATCTTTCGACTTACGATGTTATCC
15504 CAGTCGATTTTGTAAGACCTTCGG
66 CAGTCGATTTTGTAAGACCTTCGG
15528 ACATAATTTC
Statistics
Matches: 192, Mismatches: 25, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
132 31 0.16
133 152 0.79
134 9 0.05
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.38
Consensus pattern (133 bp):
GGCATAATTTTGATTCGCGGTGTTATCTCGATCGATTCCTTATCTTTCGACTTACGATGTTATCC
CAGTCGATTTTGTAAGACCTTCGGGCATGATTCTATAAGACCTCCAGGCATGATTATTAAGACCT
CCG
Found at i:15434 original size:22 final size:23
Alignment explanation
Indices: 15383--15437 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
15373 GTCGATTTTG
* * *
15383 TAAGACCTTCGGGCATGATTCTA
1 TAAGACCTCCAGGCATGATTATA
*
15406 TAAGACCTCCAGGTATGATTAT-
1 TAAGACCTCCAGGCATGATTATA
15428 TAAGACCTCC
1 TAAGACCTCC
15438 GAGCGTAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (23 bp):
TAAGACCTCCAGGCATGATTATA
Found at i:15619 original size:86 final size:87
Alignment explanation
Indices: 15428--15650 Score: 324
Period size: 86 Copynumber: 2.6 Consensus size: 87
15418 GTATGATTAT
* * * *
15428 TAAGACCTCCGAGCGTAATTTTGATTCACGGTGTTATCTCGATCGATTCCTTATCTTTTGACTTA
1 TAAGACCTCCGGGCATAATTTCGATTCGCGGTGTTATCTCGATCGATTCCTTATCTTTTGACTTA
*
15493 CGATGTTATCCCAGTCGATTTTG
66 -GATGTTATCCCAGTCGATTCTG
* * *
15516 TAAGACCTTCGGACATAATTTCGATTCGCGGTGTTATC-CGATCGATTCTTTATCTTTTGACTGT
1 TAAGACCTCCGGGCATAATTTCGATTCGCGGTGTTATCTCGATCGATTCCTTATCTTTTGACT-T
*
15580 -GATGTTATCCCAGTCTATTCTG
65 AGATGTTATCCCAGTCGATTCTG
15602 TAAGACCTCCGGGCATAATTTCGATTCGCGTGTGTTATCTCGATCGATT
1 TAAGACCTCCGGGCATAATTTCGATTCGCG-GTGTTATCTCGATCGATT
15651 TATTATTTTT
Statistics
Matches: 121, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
86 48 0.40
87 31 0.26
88 42 0.35
ACGTcount: A:0.20, C:0.22, G:0.19, T:0.39
Consensus pattern (87 bp):
TAAGACCTCCGGGCATAATTTCGATTCGCGGTGTTATCTCGATCGATTCCTTATCTTTTGACTTA
GATGTTATCCCAGTCGATTCTG
Found at i:15853 original size:15 final size:15
Alignment explanation
Indices: 15835--15875 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
15825 ATATTATACG
15835 AAATACAAAAAAAAT
1 AAATACAAAAAAAAT
*
15850 AAATAC-CAAAAAAT
1 AAATACAAAAAAAAT
15864 -AATACAAAAAAA
1 AAATACAAAAAAA
15876 TAGCAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 5 0.22
14 12 0.52
15 6 0.26
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (15 bp):
AAATACAAAAAAAAT
Found at i:15862 original size:14 final size:14
Alignment explanation
Indices: 15835--15877 Score: 61
Period size: 13 Copynumber: 3.1 Consensus size: 14
15825 ATATTATACG
15835 AAATACAAAAAAAAT
1 AAATAC-AAAAAAAT
*
15850 AAATACCAAAAAAT
1 AAATACAAAAAAAT
15864 -AATACAAAAAAAT
1 AAATACAAAAAAAT
15877 A
1 A
15878 GCAAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 12 0.48
14 7 0.28
15 6 0.24
ACGTcount: A:0.77, C:0.09, G:0.00, T:0.14
Consensus pattern (14 bp):
AAATACAAAAAAAT
Found at i:15897 original size:23 final size:23
Alignment explanation
Indices: 15835--15900 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 23
15825 ATATTATACG
15835 AAATACAAAAAAAATAAATACCAAA
1 AAATA-AAAAAAAA-AAATACCAAA
* * *
15860 AAATAATACAAAAAAATAGCAAA
1 AAATAAAAAAAAAAAATACCAAA
15883 AAA-AAAAAAAGAAAAATA
1 AAATAAAAAAA-AAAAATA
15901 TTCTGTTCAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 5 0.14
23 19 0.54
24 6 0.17
25 5 0.14
ACGTcount: A:0.79, C:0.08, G:0.03, T:0.11
Consensus pattern (23 bp):
AAATAAAAAAAAAAAATACCAAA
Found at i:17225 original size:17 final size:17
Alignment explanation
Indices: 17190--17242 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
17180 TAAGTTTTTG
17190 AAACC-CCTAAAAATCCA
1 AAACCTCCT-AAAATCCA
* *
17207 AAATCTCCTAAAATTCA
1 AAACCTCCTAAAATCCA
*
17224 AAACCTCTTAAAATCCA
1 AAACCTCCTAAAATCCA
17241 AA
1 AA
17243 GTTGTAAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
17 27 0.90
18 3 0.10
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (17 bp):
AAACCTCCTAAAATCCA
Found at i:18915 original size:26 final size:26
Alignment explanation
Indices: 18885--18937 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18875 GTAGACTTAG
*
18885 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
18911 GCATATGGAGTTCATTCCAAGTGTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
18937 G
1 G
18938 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:20130 original size:897 final size:897
Alignment explanation
Indices: 18213--20543 Score: 3396
Period size: 898 Copynumber: 2.6 Consensus size: 897
18203 GACAATGTGT
* * **
18213 GATGGGTGCTGGTACTT-GCTCTTATATTGGCCCCCTATCTCTCATCAAACC-TGAAGAACTCGG
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTG-AGAACTCAC
*
18276 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAAT
65 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
18340 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
130 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
18404 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAA
195 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * * * *
18468 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCATCT
260 AATTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
18533 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
325 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
18598 ATTGGCATGGAAAAAATATGTAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
390 ATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
18663 TGCATGCCGCCTCTCTGGCCGACGTAGTGCCCGCTTGCCGGCTCGTCTCGTCGGTTGGCTTAGCC
455 CGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGC-CGCCCGCTCGT-TTGTCGGTTGGCTTAGGC
* *
18728 ATACGGAGTTCATTCCCAATCTAACATTAGACAGGACCGAGGGTTGCAGCAACAAGATCAGCAAC
518 ATACGGAGTTCATTCCCAGTCTAAAATTAGACAGGACCGAGGGTTGCAGCAACAAGATCAGCAAC
* * * *
18793 ACACAGAGAGGGACTCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
583 ACACAGAGAGGGACCCGATCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCAGCTGAGCGCCC
* * * *
18858 GCACGCTCGTTTCATGGGTAGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT
648 GCACGCTCATTTCATGGGTAGACTTAAGCATACGGAGTTCATTCCCAATCTAAGCATATGAAGTT
* **
18923 CATTCCAAGTGTAAGATCGGACCAGACCGAGGCTTTTGGGTGCACATGCTGGGCTTGGGCATGTG
713 CATTCCAAGTGTAAAATCGGACCAGACCGAGGCTTGCGGGTGCACATGCTGGGCTTGGGCATGTG
** ** ** ** * *
18988 CTGGTGCTGCAATTTTTGCACTCGGGGTGCCATTTCCGGAGCATCGTCGGAGAACCTGACCGGCG
778 CTGGTGCCACAATTTTTGCACTCGGGGCACCATCGCCGGAGCATCCCCAGAGAACCTGACCGACG
* ***
19053 GCATTGGAGGTTCCGACGATTTGGTGGGGCGGGGGGGTGTGCGCACATGATGTGT
843 GCATTGGAGGTTCCGACGATTTGGTGGGGCGGGGCGGTGTGCGCACATGATGCAC
* * **
19108 GATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTTTCCCTCATCAAACCTCAAGAACTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
*
19173 CCCCCTTAAAGAGCATTTGAGGTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
19238 GGGACAGTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTCAGCTGAATTTTTTTGT
131 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
19303 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTGGGGCCAAAACTCCTTCTGAAAAAA
196 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
19367 ATTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
261 ATTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
19432 GCCATGAAACTTCACATGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCA
326 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
19497 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
391 TTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
** * *
19562 GCATCCCGCCTCTCTGGCCGACGTAAAGCCCGTCCGCCCACTCCTTATGTCGGTTGGCTTAGGCA
456 GCATCCCGCCTCTCTGGCCGACGTAGTGCCCG-CCGCCCGCTCGTT-TGTCGGTTGGCTTAGGCA
* ** * * * * * *
19627 TACGGAGTT-ATTCCCAGTCTAAAATTGGACCA-GAGTGAGGGTTGTAGCAGCAGGATCGGTAGC
519 TACGGAGTTCATTCCCAGTCTAAAATTAGA-CAGGACCGAGGGTTGCAGCAACAAGATCAGCAAC
* * *
19690 ATACAGAG-GAGGACCCGGTCGATCCCCGGCTTGTACATCCTGCCCCTCTGGCCAGCTGAGCGCC
583 ACACAGAGAG-GGACCCGATCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCAGCTGAGCGCC
* * *
19754 CGCATGCTCATTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAATCTAAGCATATGAAGT
647 CGCACGCTCATTTCATGGGTAGACTTAAGCATACGGAGTTCATTCCCAATCTAAGCATATGAAGT
* * * * *
19819 TCATTCCCAGTGTAAAATCGGACCGGATCGAGGGTTGCGGGTGCACATGTTGGGCTTGGGCATGT
712 TCATTCCAAGTGTAAAATCGGACCAGACCGAGGCTTGCGGGTGCACATGCTGGGCTTGGGCATGT
*
19884 GCTGGTGCCACATTTTTTTTTGC-C-CGGGGCACCATCGCCGGAGCATCCCCAGAGAACCTGACC
777 GCTGGTGCCACA---ATTTTTGCACTCGGGGCACCATCGCCGGAGCATCCCCAGAGAACCTGACC
* * * * *
19947 GATGGTATTGGGGGTTCC-AGTGATTTGG-GGGGCGGAGGCGG-GTGCGCACATGGTGCAC
839 GACGGCATTGGAGGTTCCGA-CGATTTGGTGGGGCGG-GGCGGTGTGCGCACATGATGCAC
*
20005 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTTGAGAACTCACA
1 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
* * * *
20070 CCCCCTTAAAGAGTATTTGAGATTTTACAAGTTTGCTACCAGTAGCCGTTAAAGTGTCTGAAATG
66 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
20135 GGGACACTTTTTTCAAATGGTCATAAAATCCTGTACACTTCGAGTTTTTACCTGAATTTTTTTGT
131 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
20200 GCATGCCAACAAAAATACATGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
196 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * * * * *
20265 TTTTAAAAAAATTCTGAACTC-TAAAAGGTTTCAAAAATCATGAAAAATACAAAACGAGTTGTCT
261 ATTTAAAAAAATCCCGAAC-CGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
20329 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
325 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
20394 ATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
390 ATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * * *
20459 CGCATCCCGCTTCTCTGGTCGGTGTAGTGCCCGCCCGCCTGCTTGTTTCATCGGTTGGCTTAGGC
455 CGCATCCCGCCTCTCTGGCCGACGTAGTGCCCG-CCGCCCGCTCGTTT-GTCGGTTGGCTTAGGC
*
20524 ATACGGGGTTCATTCCCAGT
518 ATACGGAGTTCATTCCCAGT
20544 TTAAGATCGG
Statistics
Matches: 1289, Mismatches: 129, Indels: 32
0.89 0.09 0.02
Matches are distributed among these distances:
895 17 0.01
896 39 0.03
897 541 0.42
898 673 0.52
899 12 0.01
900 7 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (897 bp):
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
ATTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCTCGTTTGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAAATTAGACAGGACCGAGGGTTGCAGCAACAAGATCAGCAACACA
CAGAGAGGGACCCGATCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCA
CGCTCATTTCATGGGTAGACTTAAGCATACGGAGTTCATTCCCAATCTAAGCATATGAAGTTCAT
TCCAAGTGTAAAATCGGACCAGACCGAGGCTTGCGGGTGCACATGCTGGGCTTGGGCATGTGCTG
GTGCCACAATTTTTGCACTCGGGGCACCATCGCCGGAGCATCCCCAGAGAACCTGACCGACGGCA
TTGGAGGTTCCGACGATTTGGTGGGGCGGGGCGGTGTGCGCACATGATGCAC
Found at i:21098 original size:580 final size:580
Alignment explanation
Indices: 19988--21121 Score: 1788
Period size: 580 Copynumber: 2.0 Consensus size: 580
19978 GCGGAGGCGG
*
19988 GTGCGCACATGGTGCACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
1 GTGCGCACATGATGCACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * * * *
20053 AGCCTTGAGAACTCACACCCCCTTAAAGAGTATTTGAGATTTTACAAGTTTGCTACCAGTAGCCG
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACAAGTAGCCA
* * *
20118 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCCTGTACACTTCGAGTTTT
131 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTT
** * * *
20183 TACCTGAATTTTTTTGTGCATGCCAACAAAAATACATGGATCACGTCTACCAAGTTTGGGGCCAA
196 TACCTGAATTTTTTTACGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAA
* *
20248 AACTCCTTCTGAAAAAATTTTAAAAAAATTCTGAACTCTAAAAGGTTTCAAAAATCATGAAAAAT
261 AACTCCTTCTGAAAAAATTTTAAAAAAATTCCGAACTCTAAAAAGTTTCAAAAATCATGAAAAAT
*
20313 ACAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
326 ACAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
* *
20378 AAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
391 AAGCCATAAAAATGGCATTGGCAGGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* ** * * *
20443 ATCGATCCATGGCTTGCGCATCCCGCTTCTCTGGTCGGTGTAGTGCCCGCCCGCCTGCTTGTTTC
456 ATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGTCGGCATAGTGCCCACCCGCCCGCTCGTTTC
* *
20508 ATCGGTTGGCTTAGGCATACGGGGTTCATTCCCAGTTTAAGATCGGATCGAACCGAGGGT
521 ATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGATCGAACCGAGGGT
** *
20568 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCATCA
1 GTGCGCACATGATGCACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
20633 AACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCA
66 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACAAGTAGCCA
20698 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTT
131 TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTT
* * *
20763 TAGCTGAATTTTTTTACGCATGCCAAAAAAAATATAAGGATCACGTCTACCATGTTTGGAGCCAA
196 TACCTGAATTTTTTTACGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAA
* * *
20828 AACTCCTTCTGGAAAAATTTTAAAGAAA-TCACGAAC-CGTAAAAAGTTTTAAAAATCATGAAAA
261 AACTCCTTCTGAAAAAATTTTAAAAAAATTC-CGAACTC-TAAAAAGTTTCAAAAATCATGAAAA
* *
20891 ATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
324 ATACAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
20956 GCAAGCCATAAAAATGGCATTGGTAGGGCAGAAATATGAAGATGTGCCTAAAGCCACCTACCACC
389 ACAAGCCATAAAAATGGCATTGGCAGGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* *
21021 CTATCGATCCATGGCTTGCGCATCTCGCCTCTTTGG-CTGGCATAGTGCCCACCCGCCCGCTCGT
454 CTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGTC-GGCATAGTGCCCACCCGCCCGCTCGT
* *
21085 TTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCCA
518 TTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCA
21122 ATCTAATATC
Statistics
Matches: 503, Mismatches: 48, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
579 4 0.01
580 499 0.99
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (580 bp):
GTGCGCACATGATGCACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTACAAGTAGCCA
TTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTT
TACCTGAATTTTTTTACGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAA
AACTCCTTCTGAAAAAATTTTAAAAAAATTCCGAACTCTAAAAAGTTTCAAAAATCATGAAAAAT
ACAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCAGGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGTCGGCATAGTGCCCACCCGCCCGCTCGTTTC
ATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGGATCGAACCGAGGGT
Found at i:23909 original size:896 final size:895
Alignment explanation
Indices: 20564--31209 Score: 13716
Period size: 897 Copynumber: 12.0 Consensus size: 895
20554 ATCGAACCGA
*
20564 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
20629 ATCAAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTA
66 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
20694 GCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAG
131 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
** * * * *
20759 TTTTTAGCTGAATTTTTTTACGCATGCCAAAAAAAATATAAGGATCACGTCTACCATGTTTGGAG
196 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
20824 CCAAAACTCCTTCTGGAAAAATTTTAAAGAAAT-CACGAACCGTAAAAAGTTTTAAAAATCATGA
261 CCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCCA-GAACCGTAAAAAGTTTCAAAAATCATGA
*
20888 AAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
325 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
* * * *
20953 TTTGCAAGCCATAAAAATGGCATTGGTAGGGCAGAAATATGAAGATGTGCCTAAAGCCACCTACC
390 TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * *
21018 ACCCTATCGATCCATGGCTTGCGCATCTCGCCTCTTTGGCTGGCATAGTGCCCACCCGCCCGCTC
455 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTC
** * * *
21083 GTTTCGTTAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAATATCAGACCAGA-TCGAGGG
520 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACT-GAGGG
* * * * **
21147 TTGCAGTAGCAGGATTGGTAGCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATTGTGC
584 TTGCGGTAGCAGGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGC
* * * *
21212 CCCTCTGG-TCGGCTGAGCACCCGTACGCTCTTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
649 CCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * **
21276 TCCCAGTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCGGATCGGACCTAGGGTTGCGGGTG
713 TCCCAGTCTAAGCATACGGAGTTCATT-CCAGTGTAAGATCGGA-CCGACAGAGGGTTGCGGGTG
* * * * * *
21341 CACATGCTGGGCTCGAGCATGTGTTGGTGCCGCATTTTCTTTCGCCCGGGGCACGATCGTCAGAG
776 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAG
* *
21406 CATCG-CTGGAGAACCTGATCGATGGCATTGGGGGTTCCGACGATTGGGGGGGCGGG
841 CATCGTC-GGAGAACCTGACCGACGGCATT-GGGGTTCCGACGATTGGGGGGGCGGG
* * *
21462 GGGTGTGCCCACATGATGTGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCCTCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
21527 ATCAAACCTTGAGAACTCAC-CCCCCTTTAAAGAGAATTTGAGATTTTACAAGTTTGCTGCCAGT
66 ATCAAACCTCGAGAACTCACACCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* *
21591 AGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGA
130 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGA
*
21656 GTTTTTAGCTGAAATTTTTTGTGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGG
195 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
21720 GCCAAAACTCCTTTTGAAAAAATTTTAAAAAAATCCCA-AACTGTAAAAAGTTTCAAAAATCGTG
260 GCCAAAACTCCTTCTGAAAAAATTTAAAAAAAAT-CCAGAACCGTAAAAAGTTTCAAAAATCATG
*
21784 AAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
324 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
*
21849 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTAC
389 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
21914 CACCCTATCGATCCACAGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCTCGCCCGCCCGCT
454 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT
* * * * *
21979 CATTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGA-T-GAAATCGAG
519 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAG-ACT-GAG
* * * * * ** *
22042 GGTTGCGGTAGCAGGATCGACAGCACGTAGAGGGGGACCTGACTGATCCTCGGCTTGCTTATGCT
582 GGTTGCGGTAGCAGGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCT
* * * *
22107 GCCCCTCTGGCCGGCTGAGCACCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
647 GCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
22172 TTCCTAGTGTAAG-AT-C-G-G---A--CC-------GA----ACCG--A-A-GGTTGCGGGTGC
712 TTCCCAGTCTAAGCATACGGAGTTCATTCCAGTGTAAGATCGGACCGACAGAGGGTTGCGGGTGC
* * * *
22213 ACATGCTGGGCTCGGGCATGTGGTGGTGCCACATTTTTTTT-GCCCGGGGCACCATCGTCAGAGC
777 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGC
**
22277 ATCGTCGGAGAACCTGACCGGTGGCATTGGGGGTTCCGACGATTGGGGGGGCGGGG
842 ATCGTCGGAGAACCTGACCGACGGCATT-GGGGTTCCGACGATTGGGGGGGC-GGG
* * *
22333 GGGTGTGCCCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
22398 ATCAAACCTCGAGACCTCACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
66 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
22463 GCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
131 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
* * * *
22527 TTTTTAGCTGAATTTTTTTTTTACATGCCAACAAAAATACTAGGATCACATCTACCAAGTTTGGG
196 TTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
** * * * *
22592 GCTGAAACTCCTTCT-AAAAAAATTAAAACAAAATCCCGAACCGTAAAAAGTGTCAAAAATCGTG
260 GCCAAAACTCCTTCTGAAAAAATTTAAAA-AAAATCCAGAACCGTAAAAAGTTTCAAAAATCATG
*
22656 AAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
324 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
* *
22721 ATTTACAAGGCATAAAAATGGCATTGGCATGGCAGAAATGTGAAGATGT-CCTAAACCCACCTAC
389 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
22785 CACCCTATCGATCCACGGCTTGCGCATCTCGCCTCTCTGGCTGGCGTAGTACCCGCCTGCCCGCT
454 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT
* * ** * * * * * *
22850 CGTTTCATCAGTTGGCTTAGGTGTATGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAAGG
519 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGG
* * * * * * *
22915 TTGCAGTAGCAGGATTGGCAGCATGCAGAGGGGGACCCGACCGATCCCTGGCTTGCACGTCCTAC
584 TTGCGGTAGCAGGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGC
* * *
22980 CCCTCTGGCTGGCTGAACGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATT
649 CCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * *
23045 CCCAGTCTAAGCATACGAAGTTCATTCCTAGTGTAAGATCGGACCGTATAGAGGGTTGTGGGTGC
714 CCCAGTCTAAGCATACGGAGTTCATTCC-AGTGTAAGATCGGACCG-ACAGAGGGTTGCGGGTGC
* * * * ** * *
23110 ACATGC-AGGCTTGGGCATGGGCTGGTGCTGTTTTTTTTTTCGCCCGGGGCACCATCGTCAGAGC
777 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGC
* *
23174 ATCGTCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATTGGGGGGGTGGG
842 ATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGG
* * *
23228 GGGTTGTGCGCACATGATGTGCGATGGGTGCTGATTCTTGGCCCTTATATTGG-CCCTTATCCCT
1 GGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
*
23292 CATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
65 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
*
23357 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTGGTCACAAAATCCTGTACACTTCGA
130 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGA
* * * *
23422 GTTTTTAGCTGAATTTTGTTGCGCATGCCAACAAAAATACAAGGATCATGTCTCCCAAGTTTGGG
195 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
23487 GCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCCAGAACCGTAAAAAGTTTCCAAAATCGTGA
260 GCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGA
* *
23552 AAAATAGAAAACGAGTCATCTTGCAATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
325 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
23617 TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
390 TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
23682 ACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCAGCTTAGTGCCCGCCTGCTCGCTC
455 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTC
* * * *
23747 GTTTCGTCGATTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGAGT
520 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGT
* * * *
23812 TGCGGCATCAGGATTGGCAGCACGTAAAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCC
585 TGCGGTAGCAGGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCC
* * * *
23877 CCTCTGGCTAGCTGAGCGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTC
650 CCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* * * ****
23942 CTAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGATCAGACCA-AAGGTCATTGGTGC
715 CCAGTCTAAGCATACGGAGTTCATT-CCAGTGTAAGATCGGA-CCGA-CAGAGGGTTGCGGGTGC
* * * ***
24006 ACATGCTAGGCTTGGGCATGTGCTGGTGTCC-C-TTTTTTTCTCACCTATGGCACCATCGCCGGA
777 ACATGCTGGGCTCGGGCATGTGCTGGTG-CCGCATTTTTTT-TCGCCCGGGGCACCATCGCCGGA
** * * * * **
24069 GCATCACCGAAGAACTTGACCGGCAGCATTGGGGGTTCCGACGATTGGGGGGGTAGG
840 GCATCGTCGGAGAACCTGACCGACGGCATT-GGGGTTCCGACGATTGGGGGGGCGGG
* *
24126 GGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTAGCCCTTATATTGG-CCCCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
24190 ATCAAACCTCAAGAACTCACACACCCTTAAAAAGCATTTGAGATTTTACAAGTTTGCTGCCAGTA
66 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
24255 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
131 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
* ** *
24320 TTTTTAGCTGAATTTTTTGGTGTGTGCCAACAAAAATACAAGGATCACGTC-ACCCAATTTTGGG
196 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA-CCAAGTTTGGG
* * * * *
24384 GCCAAAAATCCTTCTGAAAAAATTTTAAAATAATCTC-GAATCGTAAAAAGTGTCAAAAATCATG
260 GCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATC-CAGAACCGTAAAAAGTTTCAAAAATCATG
* * *
24448 AAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACTTGAAGGCTTAAAGGACCATTGTATGA
324 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
* * *
24513 ATTTACAAGGCATAAAAATGGCATTGGCATGGCAGAAACATGAAGATATGCCTAAACCCACCTAC
389 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
** * * * * *
24578 CACCCTATCGATCCACGGCTTGCGCATCCTACCTCTCTGGCTGACATAGTACCCGCCTGCCCGCT
454 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT
* * ** **
24643 CGTTTTGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGA-TCAGACCAAGG
519 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-AGACTGAGG
* * * * * * *
24707 GTTGTGGCAGCAGGATTGGTAGCACGTAGAGGGGGACCCGACCGATCCCTGGCTTGCACAACCTA
583 GTTGCGGTAGCAGGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTG
* * *
24772 CCCCTCTCG-TCGGCTGAGCG-CCGCACGCTCATGTCGTGGGTTGACTTAGGCATACGGAGTTCA
648 CCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * *
24835 TTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTGTAAGATCGGACTAGACTGAGGGTTGCGGGT
712 TTCCCAGTCTAAGCATACGGAGTTCATTCC-AGTGTAAGATCGGAC-CGACAGAGGGTTGCGGGT
* * * * *** *
24900 GCACATGCTGGGCTCAGGCTTGTGCTGGTGCTGCATTTTTTTTCACCCGACCCACCATCGCTGGA
775 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGA
** * * ** *
24965 GCATCACCGGAGAACTTGACTGGA-GGCATTGGGAGTTTTGACGATTAGGGGGGCGGG
840 GCATCGTCGGAGAACCTGAC-CGACGGCATTGGG-GTTCCGACGATTGGGGGGGCGGG
25022 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
25087 ATCAAACCACAAGAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
66 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
25152 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
131 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
* * * *
25217 TTTTTAGCTGAATTTTTTGGTGCAAGCCAACAAAAATACAAGGATCATGTCTCCCAAGTTTGGGG
196 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * * ** **
25282 CAAAAAATCCTTCTGAAAAAATTTTAAAAAAATTCAGAACCGAAAAAAGTTTTGAAAATTGTGAA
261 CCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAA
* * *
25347 AAATA-AAATGCAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTGAGGGACCATTGTATGAA
326 AAATAGAAA-ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
* * * *
25411 TTTACAAGCCATAAAAATGGCATTCGCATGGCATAAATATAAAGATATGCCTAAACCCACCTACC
390 TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * *
25476 ACCCTATCGATCCATGGCTTGTGCCTCTCGCCTCTCTGGCTGGCGTAGTGCCCGCCCACTCGCTC
455 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTC
* * ** *
25541 GTTTTGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGT
520 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGT
* * * *
25606 TGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGTGCATCCTGCC
585 TGCGGTAGCAGGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCC
* * * * * *
25671 TCTTTGGCCT-GCTGAGCGCCCACATGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATT
650 CCTCTGG-CTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * *
25735 CCCAGTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATCAGACCAGACCA-AGGCTTACGGGTG
714 CCCAGTCTAAGCATACGGAGTTCATT-CCAGTGTAAGATCGGACC-GA-CAGAGGGTTGCGGGTG
* * * * * * * *
25799 CACAGGATAGGCTCGAGCATGTGCTGGTGCCAC-CTTTTTTTCGCCCGGGGCACCATCACAGGAG
776 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAG
* * *
25863 CGTCGTCAGAGAACCTGACC-AGCGACATTGGGGTTCCGACGATT-GGGGGGCGGGG
841 CATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATTGGGGGGGC-GGG
* *
25918 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATGCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
25983 A-CAAACCTCGAGAACTGACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
66 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
26046 GCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
131 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
* *
26111 TTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCACATCTACCAACTTTGGGG
196 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
26175 CAAAAACTCCTTCTGAAAAAATTTTTAAAAAAAT-CATGAACTGTAAAAAGTTTCGAAAATCATG
261 CCAAAACTCCTTCTGAAAAAA-TTTAAAAAAAATCCA-GAACCGTAAAAAGTTTCAAAAATCATG
* * *
26239 AAAAATAG-AAACGAGTTGTCTTGCCATGAAATTTCACATGAAGGCTTAAGAGACCATTGTATGA
324 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
* * * *
26303 ATTTACAAGCCATAAAAATAGCATTCGCATGGCAAAAATATGAAGGTGTGCCTAAACCCACCTAC
389 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
26368 CACCCTATCGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGACGTAGTGCCTGCCCACCCGTT
454 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT
* * * * * *
26433 CATTTCGGCGGTTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGAATCGAGG
519 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACT-GAGG
* ** * * * * ** * * *
26497 GTTGCAGCCGTAGAATCGGTAGCACACAGGGGGGGACCCGACCAATCCCCAGCTTGCGCATCCTG
583 GTTGCGGTAGCAGGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTG
* * * * *
26562 CCCCTCTGGCCGGCTGAGCGCTCACACGCTCGTTTCGTGGGTTGACTTACGTATACGGAGTTCAT
648 CCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* ** * * *
26627 TCCCAGTCTAAGCATATGTTGTTCATTCGCAGTGTAAGATCGAACCAGACCGAGGGTTGCAGGTG
713 TCCCAGTCTAAGCATACGGAGTTCATTC-CAGTGTAAGATCGGACC-GACAGAGGGTTGCGGGTG
* * * *
26692 CACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTTGCTCGGGGCAGCATCGCCGGAG
776 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAG
* * * ** * *
26757 CATCGACGGAGAACCTCATCGGTGGCATTGGGGTTCCGGCGCTTGGGGGGGCCGGG
841 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGG-CGGG
*
26813 GGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * **
26878 TTCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGTTAGTA
66 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
** *
26943 GCCATTAAAGCATCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAGTTCGAG
131 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
* * * *
27007 TTTTTAGCTCAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGG
196 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * ** * * **
27072 CCAAAAATCCTTTTGAAAAAATTTTCAAAAATTCCCGAACCGTAAAAAGTTTTGAAAATCATGAA
261 CCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAA
* * * *
27137 AAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGCGACCACTCTATGAAT
326 AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
* * * * *
27202 TTAGAAGCCATAAAAATGGCATTGGCATGGCAAAAATATAAAGATGTGCCTACACTCACCTACCA
391 TTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* *
27267 CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCAGCGTAGTGCCCGCCCGCCAGCTCG
456 CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
* * *
27332 TTTCGTCGGTTGGCTTAGGGATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
521 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTT
* ** * * * *
27397 GTGGTAGCAGGATCAGCAGCACGTAGGGGGGGACCCGACCGATCCTCGGCTTGTGCATTCTGCCC
586 GCGGTAGCAGGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCC
* ** * * * *
27462 CTCTGGCCGATTGAGCGCCCGTACGCTCATTTTGTGTGTTGACTTAGGCATACGGAGTTCATTCC
651 CTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* ** * * *
27527 CAGTCTAAGCATATGTTGTTCATTCGCAGTGTAAGATCGAACCAGACCGAGGGTTGCAGGTGCAC
716 CAGTCTAAGCATACGGAGTTCATTC-CAGTGTAAGATCGGACC-GACAGAGGGTTGCGGGTGCAC
*
27592 ATGCTGGGCT-GAGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCGGGGCACCATCGCCGGAGCA
779 ATGCTGGGCTCG-GGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCA
* * * * *
27656 TCGACTGAGAACCTGATCGACGGCATCGGGGTTCCGACGCTTGGGGGGGCCGGG
843 TCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGG-CGGG
*
27710 GGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
27775 ATCAAACCTCGAGAACTCACACCCCTTTAAAGAGTATTCGAGATTTTACAGGTTTGCTGCCAGTA
66 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
27840 GCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
131 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
* * * * *
27905 ATTTTAGCTGAATTCTTCTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTGTGGGG
196 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * *
27970 CAAAAACTCCTTCTGAAAAAATTTTAAAAAAAATCCTGAACTGTAAAAAGTTTCAAAATTCGTGA
261 CCAAAACTCCTTCTGAAAAAA-TTTAAAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGA
*
28035 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA-GGACCATTATATGAA
325 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
* * *
28099 TTTACATGCCATAAAAATGGCACTGGCATGGCAGAAATATGAAGATTTGCCTAAACCCACCTACC
390 TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * * * * *
28164 ACCCTATCGATCCACAGCTTGTGCATCTCGCCTCTTTGGCCGGCATAGTGCCTGCCTGCCAGCTC
455 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTC
* *
28229 ATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TCGAGGG
520 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACT-GAGGG
* * * * * *
28293 -T----TA-C---A---GCAGCACGTAGAGGGGGACCCGATCGATGCTCGACTTGTGCATCCTAC
584 TTGCGGTAGCAGGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGC
* * * *
28346 CCCTCTGGCCGGCT-AGGCGCCCGTACGCTCGTTTTGTGTGTTGACTTAGGCATACGGAGTTCAT
649 CCCTCTGGCTGGCTGA-GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * ** * * **
28410 TCCCAGTCTAAGTATACAGAGTTCATTTCCAGCATAAGATCAGACTGGACCA-AGGGTTATGGGT
713 TCCCAGTCTAAGCATACGGAGTTCA-TTCCAGTGTAAGATCGGAC-CGA-CAGAGGGTTGCGGGT
* *
28474 GCCCATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGG---C--C-CC---
775 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGA
* *
28530 G--TCGTCGGAGAACCTGACCGACGGCATTAGGGTTCCGATGATTAGGGGGCGG-GTGG
840 GCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGG-GGCG-GG
* *
28586 GGGTGTGCGCACATGATGTACGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
28651 ATAAAACCTTGAAAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
66 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * *
28716 GCCATTAAAGTGTCTGAAATGGGGACA-TTTCTCTCAAATGGTCAGAAAATCCTATACACTTCTA
131 GCCATTAAAGTGTCTGAAATGGGGACACTTT-TTTCAAATGGTCACAAAATCCTGTACACTTCGA
* * *
28780 GTTTTTAGCTGAATTTTTTTGTGCATGCCGACAAAAATACAAGGATCACGTCTACCAAGTGTGAG
195 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * **
28845 GCAAAAACTCCTTCTGAAAAAATTTAAAAAAAATCTC-GAACCGTAAAATGTTCCAAAAATTGTG
260 GCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATC-CAGAACCGTAAAAAGTTTCAAAAATCATG
* * *
28909 AAAAATAGAAAACGAGTCATCTTGCCATTAAACTTCACATGAAGGGTTAAGGGACCATTGTATGA
324 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
* * *
28974 ATTTACATGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATTTGCCTAAACCAACCTAC
389 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * ** *
29039 CACCCTATTGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCTACCCACT
454 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT
* * * * ** * * *
29104 CGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTGTAACATTGGACTGGACCGATGG
519 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGG
* * * *
29169 TTACGGTAGCAGGATTGGCAGCA--T-GCAGGGGGACCCGATCGATCCTCGGCTTGTGCATCCTG
584 TTGCGGTAGCAGGATTGGCAGCACGTAG-AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTG
* * * * * * * *
29231 CCCCTCTAGCGGGTTGAGCGCCTGCACGTTCATTTCATGGGTTGACTTAGGCATACAGAGTTCAT
648 CCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
29296 TCCTAGTCTAAGCATACGAAGTTCATTCGCAGTGTAAGATCAGACTGGACCGAGGGTTGCGGGTG
713 TCCCAGTCTAAGCATACGGAGTTCATTC-CAGTGTAAGATCGGAC-CGACAGAGGGTTGCGGGTG
** * * *
29361 CACATATTGGGCTCGGGCATGTGCTGGTGCTGTATTTTTTTT-GCCC---G-----T-G-C--AC
776 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAG
* * * *
29413 CATCGTCGGAGAACCTGACCGACGGCATTGAGGTTCCGACAATTAGGGGGCCGGG
841 CATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGG
* *
29468 GGGTGTGCGCAAATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* *
29533 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAATTTATAGGTTTGCTGCCAGTA
66 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
** *
29598 GCGGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAG
131 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
* * * *
29663 TTTTTGGCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGGATCATGTCTACCAGGTTTGGGG
196 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * **
29728 TCAAAACTCCTTCTGAAAAAATTTTAAAAAAATTCCA-AACCATAAAAAGTTTTGAAAATCATGA
261 CCAAAACTCCTTCTGAAAAAA-TTTAAAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATG-
* * *
29792 AAAAATAGAAAAGGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGCGACCATTGTATGA
324 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
*
29857 ATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
389 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * * * **
29922 CACCTTATCGATCCACGGCATGCACATCCTGCCTCTCTAGCCGACGTAGTGCCCGCCAACCCGCT
454 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT
* ** * *
29987 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATTGGACCAGACAGAGGG
519 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGG
* * * * * * * *
30052 TTGCAGTAGTAGGATCGGAAGCACGTAGAGGGGAACCTG-TCGATCCCTGGCTTGCGCATCCTGC
584 TTGCGGTAGCAGGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGC
* * *
30116 CCCTCT-GATCGGCTGAGCGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
649 CCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
30180 TCCCAGTCTAAGCATACAGAGTTCATTCCCAGTGTAAGATCAGACCGGATC-GCGGGTTACGGGT
713 TCCCAGTCTAAGCATACGGAGTTCATT-CCAGTGTAAGATCGGACC-GA-CAGAGGGTTGCGGGT
* * *
30244 GCACA---T--GCT-AGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCAACGCCGGA
775 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGA
** * * * *
30303 GCATCACCGGAAAACCTGATCGACGGCATTGGGGTTCCGACAATTGGAGGGGC-GG
840 GCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGG
*
30358 GGG-GTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
1 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
30422 ATCAAACCTCAAGAACTCACA-CCCCTTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
66 ATCAAACCTCGAGAACTCACACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * * *
30486 AGGCATTAAACTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA-GAAATCTTGTACACTTCGA
130 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGA
* *
30550 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATTCAAGGATCATGTCTACCAAGTTTGGG
195 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * ** **
30615 TCCAAAACTCCGTCTGAAAAAATTTTAAAAAAAATCTTGAATTGTAAAAAGTTTCAAAAATCATG
260 GCCAAAACTCCTTCTGAAAAAA-TTTAAAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATG
* * * *
30680 AAAAACAGAAAACGAGTTGTCTTGCCCTGAAACTTCACATGAAGGCTTAAGGGACCACTGTATGA
324 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
* * *
30745 ATTTACAAGCCATAAAAATGGCATTAGCATGGCAAAAATATGAAGATGTGGCTAAACCCACCTAC
389 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * *
30810 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTTTCTGGCCGGCGTAGTGCCCGCCCACCAGCT
454 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCT
* * * *
30875 CGTTTCGTCAGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGA-GG
519 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGG
* * * * * * *
30939 TTGGGGTAGTATGATTGGTAGCACGTAG-GGGGGACCCGACCGATCCTCGGCTTACGCATCCTAC
584 TTGCGGTAGCAGGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGC
* * * * *
31003 CCCTCTGGCCGGTTGGGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATT
649 CCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * *
31068 CCCAGTCTAAGCATACGGAGTTCATTCCCAGCGTAAGATCGGACCGGATC-GAGGGTTGTGGATG
714 CCCAGTCTAAGCATACGGAGTTCATT-CCAGTGTAAGATCGGACC-GA-CAGAGGGTTGCGGGTG
* * * * * *
31132 CACATGCTAGGCTTGGGCATGCGCTGGTGCCACATTTTTTTTTG-CCGGGGCACCATCGTCGGAG
776 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAG
*
31196 CATCGTCAGAGAAC
841 CATCGTCGGAGAAC
31210 TCACACCCCC
Statistics
Matches: 8585, Mismatches: 996, Indels: 340
0.87 0.10 0.03
Matches are distributed among these distances:
870 125 0.01
871 459 0.05
872 190 0.02
873 2 0.00
875 124 0.01
876 448 0.05
877 4 0.00
878 25 0.00
879 7 0.00
880 6 0.00
881 5 0.00
882 279 0.03
883 272 0.03
884 172 0.02
885 23 0.00
886 373 0.04
887 169 0.02
888 356 0.04
889 176 0.02
890 7 0.00
891 45 0.01
892 42 0.00
893 482 0.06
894 237 0.03
895 400 0.05
896 905 0.11
897 2509 0.29
898 655 0.08
899 88 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
CCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCCAGAACCGTAAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT
TTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCG
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTT
GCGGTAGCAGGATTGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCC
CTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
CAGTCTAAGCATACGGAGTTCATTCCAGTGTAAGATCGGACCGACAGAGGGTTGCGGGTGCACAT
GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCG
TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGG
Found at i:23955 original size:26 final size:26
Alignment explanation
Indices: 23925--23977 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23915 GTTGACTTAG
*
23925 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
23951 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23977 G
1 G
23978 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:24857 original size:26 final size:26
Alignment explanation
Indices: 24821--24873 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
24811 GTTGACTTAG
24821 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* * *
24847 GCATATGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
24873 G
1 G
24874 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:30201 original size:26 final size:26
Alignment explanation
Indices: 30165--30217 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30155 GTTGACTTAG
30165 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
30191 GCATACAGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
30217 G
1 G
30218 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:31946 original size:772 final size:773
Alignment explanation
Indices: 30433--31975 Score: 2141
Period size: 772 Copynumber: 2.0 Consensus size: 773
30423 TCAAACCTCA
* * * * *
30433 AGAACTCACACCCCTTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAACT
1 AGAACTCACACCCCTTGAAAGAGCATTTGAGATTTAACAGGTTTACTGCCAGCAGCCATCAAACT
* * * * *
30498 GTCTGAAATGGGGACACTTTTTTCAAATGGTCAGAAATCTTGTACACTTCGAGTTTTTAGCTGAA
66 CTCTAAAATGGGGACACTTTTTTCAAATGGTCAAAAATCCTGTACACTTAGAGTTTTTAGCTGAA
* * * * *
30563 TTTTTTTGTGCATGCCAACAAAAATTCAAGGATCATGTCTACCAAGTTTGGGTCCAAAACTCCGT
131 TTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGTCCAAAAATCCGT
* * ** *
30628 CTGAAAAAATTTTAAAAAAAATCTTGAATTGTAAAAAGTTTCAAAAATCATGAAAAACAGAAAAC
196 CTGAAAAAATTTAAAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAAAAAAC
*
30693 GAGTTGTCTTGCCCTGAAACTTCACATGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCAT
261 GAGTCGTCTTGCCCTGAAACTTCACATGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCAT
** * *
30758 AAAAATGGCATTAGCATGGCAAAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATC
326 AAAAATGGCATTAGCACAGCAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATC
* * **
30823 CACGGCTTGCGCATCCCGCCTTTCTGGCCGGCGTAGTGCCCGCCCACCAGCTCGTTTCGTCAGTC
391 CACGGCTTGCGCATCCCGCCTCTCTGGCCAGCACAGTGCCCGCCCACCAGCTCGTTTCGTCAGTC
* * *
30888 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGTTGGGGTAGTATGA
456 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAATGGACCGAGGTTGGGGCAGCATGA
* * * * **
30953 TTGGTAGCACGTAGGGGGGACCCGACCGATCCTCGGCTTACGCATCCTACCCCTCTGGCCGGTTG
521 TTGGTAGCACATAGGGGGGACCCGACCAATCCCCGGCTTACGCATCCTACCCCTCTAGCCGACTG
** * ** * *
31018 GGCGCCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
586 ACCGCCCGCAAGCTCATTTCATGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTCTAAGAATA
* * * * * * *
31083 CGGAGTTCATTCCCAGCGTAAGATCGGACCGGATCGAGGGTTGTGGATGCACATGCTAGGCTTGG
651 CGGAGTCCATTCCCAGCGTAAGATCAGACCAGATCAAGGGTTGCGGATGCACATGCTAGGCTCGA
* *
31148 GCATGCGCTGGTGCCACATTTTTTTTTGCC-GGGGCACCATCGTCGGAGCATCGTCAG
716 GCATGCGCTGGTGCCACATTTTTTTTCGCCTGGGGCACCATCATCGGAGCATCGTCAG
* * * *
31205 AGAACTCACACCCCCTT-AGATAGCATTTGAGATTTAATAGGTTTACTGCCAGCAGCCATCAAAG
1 AGAACTCACA-CCCCTTGAAAGAGCATTTGAGATTTAACAGGTTTACTGCCAGCAGCCATCAAAC
31269 TCTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTG
65 TCTCTAAAATGGGGACACTTTTTTCAAATGGTCA-AAAATCCTGTACACTTAGAGTTTTTAGCTG
31334 AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTTGGG-CCAAAAATC
129 AATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAG-TTTGGGTCCAAAAATC
* * ** *
31398 CTTTTGAAAAAA-TTAAAAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAA
193 CGTCTGAAAAAATTTAAAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAAAA
* *
31462 AACGAGTCGTCTTGCCAC-GAAACTTCACATGGAGGCTTAAGGGACCATTGTATGAATTTACAAG
258 AACGAGTCGTCTTGCC-CTGAAACTTCACATGAAGGCTTAAGGGACCACTGTATGAATTTACAAG
* *
31526 CCATAAAAATGGCATTGGCACAGCAAAAATATGAAGATGTGCCTAGACCCACCAACCACCCTATC
322 CCATAAAAATGGCATTAGCACAGCAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATC
* **
31591 GATCCACGGCTTGCGCATCCCGCCTCTCTGGCCAGCACAGTGCCCATCCGTCC-GCTCGTTTCGT
387 GATCCACGGCTTGCGCATCCCGCCTCTCTGGCCAGCACAGTGCCC-GCCCACCAGCTCGTTTCGT
* * * * *
31655 CGGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATC-GAATCGGACTGAGGGTTGTGGC
451 CAGTCGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAAT-GGACCGA-GGTTGGGGC
* * ** *
31719 AGCA-GGTTCGGTAGCACATAGGGGGGGACCC-AGTCAATCCCCGGCTTGTGCATCCTGCCCCTC
514 AGCATGATT-GGTAGCACATA-GGGGGGACCCGA-CCAATCCCCGGCTTACGCATCCTACCCCTC
* *
31782 TAGCCGACTGACCGCCCGCAAGCTCATTTCGTGGGTTGACTTAGCCATACGGAGTTCATTCCTAG
576 TAGCCGACTGACCGCCCGCAAGCTCATTTCATGGGTTGACTTAGCCATACGGAGTTCATTCCCAG
* * *
31847 TCTAAGAATATGGAGTCCATTCCCAGTGTAAGATCAGACCAGATCAAGGGTTGCGGGTGCACATG
641 TCTAAGAATACGGAGTCCATTCCCAGCGTAAGATCAGACCAGATCAAGGGTTGCGGATGCACATG
* *
31912 CTGGGCTCGAGTATGCGCTGGTGCCACATTTTTTTTTCGCCTGGGGCACCATCATCGGAGCATC
706 CTAGGCTCGAGCATGCGCTGGTGCCACA-TTTTTTTTCGCCTGGGGCACCATCATCGGAGCATC
31976 ACCGGAGAAC
Statistics
Matches: 672, Mismatches: 87, Indels: 20
0.86 0.11 0.03
Matches are distributed among these distances:
771 3 0.00
772 342 0.51
773 121 0.18
774 174 0.26
775 11 0.02
776 21 0.03
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (773 bp):
AGAACTCACACCCCTTGAAAGAGCATTTGAGATTTAACAGGTTTACTGCCAGCAGCCATCAAACT
CTCTAAAATGGGGACACTTTTTTCAAATGGTCAAAAATCCTGTACACTTAGAGTTTTTAGCTGAA
TTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGTCCAAAAATCCGT
CTGAAAAAATTTAAAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAACAAAAAAC
GAGTCGTCTTGCCCTGAAACTTCACATGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCAT
AAAAATGGCATTAGCACAGCAAAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATC
CACGGCTTGCGCATCCCGCCTCTCTGGCCAGCACAGTGCCCGCCCACCAGCTCGTTTCGTCAGTC
GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAATGGACCGAGGTTGGGGCAGCATGA
TTGGTAGCACATAGGGGGGACCCGACCAATCCCCGGCTTACGCATCCTACCCCTCTAGCCGACTG
ACCGCCCGCAAGCTCATTTCATGGGTTGACTTAGCCATACGGAGTTCATTCCCAGTCTAAGAATA
CGGAGTCCATTCCCAGCGTAAGATCAGACCAGATCAAGGGTTGCGGATGCACATGCTAGGCTCGA
GCATGCGCTGGTGCCACATTTTTTTTCGCCTGGGGCACCATCATCGGAGCATCGTCAG
Done.