genome.fa.s275.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168100.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_346, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32569

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1509--1589	7	10.4	7	76	23	74	28	0	0	71	0.86
1526--1595	17	4.1	17	100	0	140	28	0	0	71	0.86
1530--1609	34	2.4	34	91	4	126	35	0	0	65	0.93
1596--1643	23	2.1	23	100	0	96	62	0	0	37	0.95
1867--2034	2	92.5	2	65	20	57	52	1	2	42	1.24
1866--2022	9	18.1	9	68	15	89	54	1	1	42	1.22
1869--2013	7	21.4	7	66	24	53	54	2	2	41	1.24
1871--1911	13	2.8	15	82	14	50	53	0	2	43	1.13
1984--2044	27	2.3	27	83	11	72	47	1	3	47	1.28
1973--2039	26	2.3	29	85	12	86	49	0	2	47	1.16
2064--2130	28	2.4	27	78	7	71	38	2	2	55	1.31
2054--2106	19	2.7	19	76	2	61	35	5	3	54	1.42
2353--2400	23	2.1	23	100	0	96	37	0	0	62	0.95
2366--2414	22	2.2	23	81	3	55	51	0	0	48	1.00
2407--2487	7	10.4	7	76	23	74	71	0	0	28	0.86
2401--2470	17	4.1	17	100	0	140	71	0	0	28	0.86
2407--2487	24	3.4	23	73	25	71	71	0	0	28	0.86
5802--5843	11	3.9	11	84	6	59	14	19	9	57	1.64
5802--5843	21	2.0	21	100	0	84	14	19	9	57	1.64
6086--6182	10	10.3	10	71	20	50	23	8	2	65	1.30
6119--6153	17	2.1	17	100	0	70	22	5	0	71	1.07
6248--6332	20	4.3	20	77	16	88	37	1	1	60	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6262--6340	13	5.9	13	75	18	58	37	1	0	60	1.05
6256--6340	33	2.5	32	81	12	91	37	1	0	61	1.04
6428--6464	17	2.2	17	100	0	74	59	0	16	24	1.37
8227--8275	23	2.1	23	96	0	89	30	4	18	46	1.67
8858--8893	18	2.0	18	100	0	72	44	5	22	27	1.75
9146--9370	36	6.2	36	99	0	441	41	10	19	28	1.85
9586--9679	36	2.6	36	98	0	179	28	12	23	35	1.92
9666--9857	24	8.0	24	100	0	384	29	16	33	20	1.95
9930--10328	21	19.0	21	79	4	365	41	10	19	28	1.84
9908--10328	147	2.9	147	84	1	619	40	10	19	29	1.85
9930--10307	105	3.6	105	82	3	429	41	10	19	28	1.84
10182--10414	42	5.4	42	79	9	173	38	10	20	31	1.86
10332--10485	36	4.1	36	89	5	191	29	11	23	35	1.89
11365--11408	22	2.0	22	100	0	88	31	18	4	45	1.69
11624--11713	17	5.0	17	85	12	126	35	6	11	46	1.66
11655--11740	22	4.1	22	82	14	128	38	5	9	46	1.60
11638--11735	39	2.5	39	98	0	187	36	6	10	46	1.63
16313--16346	17	2.0	17	100	0	68	52	0	11	35	1.38
16333--16463	20	6.2	20	75	20	90	58	0	11	29	1.39
16373--16450	21	3.2	25	78	17	92	60	0	10	29	1.30
16387--16429	11	4.0	11	93	6	79	62	0	9	27	1.25
16366--16461	32	2.9	31	75	20	97	59	0	10	30	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16636--16705	13	5.5	13	83	16	85	64	0	0	35	0.94
16636--16698	21	3.2	21	86	13	98	65	0	0	34	0.93
20126--20176	22	2.4	22	93	3	86	50	3	7	37	1.50
21211--21262	25	2.1	25	96	0	95	21	13	15	50	1.78
21216--21269	25	2.2	25	86	0	72	24	12	20	42	1.87
21349--21398	15	3.1	15	84	15	73	32	0	8	60	1.26
21358--21395	18	2.1	18	100	0	76	26	0	10	63	1.27
21397--21430	17	2.0	17	94	0	59	29	0	8	61	1.26
21432--21481	19	2.6	19	93	0	82	28	6	4	62	1.37
21465--21520	19	2.9	19	83	2	67	26	7	0	66	1.18
21427--21501	38	2.0	38	84	5	98	25	8	2	64	1.34
21531--21653	17	7.4	17	68	18	53	41	1	2	54	1.23
21609--21704	9	11.5	8	77	11	68	51	0	1	47	1.07
21596--21717	34	3.3	35	85	13	174	50	0	1	48	1.10
21599--21717	41	3.1	40	79	17	160	48	0	1	49	1.11
21594--21721	17	7.0	17	76	13	103	50	0	1	48	1.10
21729--21856	4	32.2	4	70	24	85	71	3	0	24	1.08
21742--21819	13	6.5	13	79	19	82	71	5	0	23	1.05
21735--21852	45	2.7	44	90	6	186	71	4	0	23	1.09
23940--24090	30	5.0	30	100	0	302	16	23	23	36	1.94
23940--24230	60	4.7	60	90	9	483	16	23	23	37	1.94
24101--24230	30	4.3	30	100	0	260	16	23	23	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23935--24230	161	1.8	161	100	0	592	16	22	23	37	1.93
23970--24221	131	1.9	131	100	0	504	16	23	23	36	1.94
24244--24478	18	13.1	18	96	3	397	22	14	12	50	1.76
24796--24833	18	2.1	18	100	0	76	28	21	15	34	1.94
26640--26808	78	2.2	78	97	0	320	35	8	15	40	1.77
26791--26823	15	2.2	15	100	0	66	48	0	6	45	1.27
26884--26916	15	2.2	15	100	0	66	48	0	6	45	1.27
26713--26989	93	3.0	93	100	0	554	36	7	14	41	1.74
29370--29437	21	3.4	20	82	13	86	61	0	0	38	0.96
29378--29435	6	10.0	6	85	10	77	65	0	0	34	0.93
29370--29435	27	2.5	26	87	9	89	63	0	0	36	0.95
31379--31424	23	2.0	23	100	0	92	26	21	4	47	1.69

Tables:   1

The End!