Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168101.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_347, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 32531
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Found at i:621 original size:14 final size:15
Alignment explanation
Indices: 596--637 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 15
586 ACTCAAATAT
596 AATATATATAATTAA
1 AATATATATAATTAA
611 AATAT-TATAATTATA
1 AATATATATAATTA-A
626 TAAGTATATATA
1 -AA-TATATATA
638 TAAATTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 8 0.35
15 6 0.26
16 2 0.09
17 3 0.13
18 4 0.17
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (15 bp):
AATATATATAATTAA
Found at i:1263 original size:18 final size:19
Alignment explanation
Indices: 1229--1279 Score: 61
Period size: 18 Copynumber: 2.7 Consensus size: 19
1219 ATCCGAAATT
1229 AATA-AAATATTATTTTTTAA
1 AATATAAATA-TA-TTTTTAA
*
1249 AATATAAA-ATATTTTTTA
1 AATATAAATATATTTTTAA
1267 AATATAAATATAT
1 AATATAAATATAT
1280 AAACATATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 14 0.50
19 6 0.21
20 5 0.18
21 3 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
AATATAAATATATTTTTAA
Found at i:1263 original size:19 final size:19
Alignment explanation
Indices: 1229--1279 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
1219 ATCCGAAATT
1229 AATA-AAATATTATTTTTTAA
1 AATATAAATA-TATTTTTT-A
1249 AATATAAA-ATATTTTTTA
1 AATATAAATATATTTTTTA
1267 AATATAAATATAT
1 AATATAAATATAT
1280 AAACATATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
18 9 0.31
19 12 0.41
20 5 0.17
21 3 0.10
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
AATATAAATATATTTTTTA
Found at i:1281 original size:8 final size:8
Alignment explanation
Indices: 1268--1310 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
1258 TATTTTTTAA
1268 ATATAAAT
1 ATATAAAT
*
1276 ATATAAAC
1 ATATAAAT
*
1284 ATATAATT
1 ATATAAAT
1292 ATATAAAT
1 ATATAAAT
1300 AAATATAAAT
1 --ATATAAAT
1310 A
1 A
1311 AACAATTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
8 21 0.72
10 8 0.28
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (8 bp):
ATATAAAT
Found at i:1305 original size:26 final size:26
Alignment explanation
Indices: 1268--1327 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
1258 TATTTTTTAA
* *
1268 ATATAAAT--ATATAAACATATAATT
1 ATATAAATAAATATAAACAAACAATT
*
1292 ATATAAATAAATATAAATAAACAATT
1 ATATAAATAAATATAAACAAACAATT
*
1318 AAATAAATAA
1 ATATAAATAA
1328 TTAAAAATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 8 0.27
26 22 0.73
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (26 bp):
ATATAAATAAATATAAACAAACAATT
Found at i:1329 original size:12 final size:12
Alignment explanation
Indices: 1286--1332 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
1276 ATATAAACAT
*
1286 ATAATTATATAA
1 ATAATTAAATAA
1298 ATAAATATAAATAA
1 AT-AAT-TAAATAA
*
1312 ACAATTAAATAA
1 ATAATTAAATAA
1324 ATAATTAAA
1 ATAATTAAA
1333 AATAATTTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
12 17 0.57
13 6 0.20
14 7 0.23
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (12 bp):
ATAATTAAATAA
Found at i:1335 original size:26 final size:26
Alignment explanation
Indices: 1288--1337 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
1278 ATAAACATAT
* *
1288 AATTATATAAATAAATATAAATAAAC
1 AATTAAATAAATAAATAAAAATAAAC
*
1314 AATTAAATAAATAATTAAAAATAA
1 AATTAAATAAATAAATAAAAATAA
1338 TTTTGTGTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (26 bp):
AATTAAATAAATAAATAAAAATAAAC
Found at i:1367 original size:19 final size:20
Alignment explanation
Indices: 1325--1367 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
1315 ATTAAATAAA
*
1325 TAATTAAAAATAATTTTGTG
1 TAATTAAAAATAATTTTCTG
1345 TAATTAAAAATAATTTTCT-
1 TAATTAAAAATAATTTTCTG
1364 TAAT
1 TAAT
1368 AATACCTGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (20 bp):
TAATTAAAAATAATTTTCTG
Found at i:2857 original size:22 final size:22
Alignment explanation
Indices: 2832--2898 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
2822 AATTTTACTT
2832 ATAAATAATATTATATTAATAA
1 ATAAATAATATTATATTAATAA
*
2854 ATAAATATTATTATATTAATAA
1 ATAAATAATATTATATTAATAA
** *
2876 ATAATATTCTAATATATTAATAA
1 ATAA-ATAATATTATATTAATAA
2899 TATTACAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
22 25 0.62
23 15 0.38
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.43
Consensus pattern (22 bp):
ATAAATAATATTATATTAATAA
Found at i:2862 original size:19 final size:18
Alignment explanation
Indices: 2832--2921 Score: 85
Period size: 22 Copynumber: 4.8 Consensus size: 18
2822 AATTTTACTT
2832 ATAAATAATATTATATTA
1 ATAAATAATATTATATTA
2850 ATAAATAAATATTATTATATTA
1 ATAAAT--A-A-TATTATATTA
* *
2872 ATAAATAATATTCTAATA
1 ATAAATAATATTATATTA
* *
2890 TATTAATAATATTACA--A
1 -ATAAATAATATTATATTA
2907 ATAAATAATATTATA
1 ATAAATAATATTATA
2922 ATATATTAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
16 13 0.22
17 1 0.02
18 14 0.23
19 13 0.22
20 2 0.03
21 1 0.02
22 16 0.27
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (18 bp):
ATAAATAATATTATATTA
Found at i:2896 original size:8 final size:8
Alignment explanation
Indices: 2843--2932 Score: 55
Period size: 8 Copynumber: 11.2 Consensus size: 8
2833 TAAATAATAT
2843 TATATTAA
1 TATATTAA
*
2851 TA-AATAA
1 TATATTAA
*
2858 -ATATTAT
1 TATATTAA
2865 TATATTAA
1 TATATTAA
*
2873 TA-AATAA
1 TATATTAA
2880 TAT-TCTAA
1 TATAT-TAA
2888 TATATTAA
1 TATATTAA
2896 TAATATTACA
1 T-ATATTA-A
* *
2906 AATAAATAA
1 TAT-ATTAA
2915 TAT-TATAA
1 TATAT-TAA
2923 TATATTAA
1 TATATTAA
2931 TA
1 TA
2933 AACAATATAA
Statistics
Matches: 62, Mismatches: 10, Indels: 20
0.67 0.11 0.22
Matches are distributed among these distances:
6 1 0.02
7 13 0.21
8 31 0.50
9 13 0.21
10 4 0.06
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (8 bp):
TATATTAA
Found at i:2932 original size:19 final size:19
Alignment explanation
Indices: 2831--2933 Score: 97
Period size: 19 Copynumber: 5.5 Consensus size: 19
2821 TAATTTTACT
*
2831 TATAAATAATATTATATTA
1 TATAAATAATATTATAATA
*
2850 -ATAAATAAATATTATTATA
1 TATAAAT-AATATTATAATA
*
2869 TTAATAAATAATATTCTAATA
1 -T-ATAAATAATATTATAATA
* *
2890 TATTAATAATATTA-CA-A
1 TATAAATAATATTATAATA
2907 -ATAAATAATATTATAATA
1 TATAAATAATATTATAATA
*
2925 TATTAATAA
1 TATAAATAA
2934 ACAATATAAA
Statistics
Matches: 67, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
16 12 0.18
17 2 0.03
18 8 0.12
19 28 0.42
20 1 0.01
21 10 0.15
22 6 0.09
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (19 bp):
TATAAATAATATTATAATA
Found at i:2951 original size:35 final size:35
Alignment explanation
Indices: 2871--2939 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 35
2861 TTATTATATT
* * *
2871 AATAAATAATATTCTAATATATTAATAATATTACA
1 AATAAATAATATTATAATATATTAATAACAATACA
2906 AATAAATAATATTATAATATATTAATAAACAATA
1 AATAAATAATATTATAATATATTAAT-AACAATA
2940 TAAAGAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 25 0.83
36 5 0.17
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (35 bp):
AATAAATAATATTATAATATATTAATAACAATACA
Found at i:3039 original size:21 final size:20
Alignment explanation
Indices: 2969--3039 Score: 64
Period size: 19 Copynumber: 3.8 Consensus size: 20
2959 TTATTTTAAG
*
2969 TATTTTTATATTAACATAA-
1 TATTTTTATATTAATATAAT
*
2988 TATTTTAATATTAA-AT-AT
1 TATTTTTATATTAATATAAT
*
3006 TATTATTA-A--AATATAAT
1 TATTTTTATATTAATATAAT
3023 TATTTTTTATATTAATA
1 TA-TTTTTATATTAATA
3040 ATTTTTATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
15 2 0.05
16 2 0.05
17 6 0.15
18 13 0.32
19 14 0.34
21 4 0.10
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (20 bp):
TATTTTTATATTAATATAAT
Found at i:3044 original size:15 final size:16
Alignment explanation
Indices: 2946--3059 Score: 63
Period size: 16 Copynumber: 6.9 Consensus size: 16
2936 AATATAAAGA
2946 ATAATAAATAA-TTTT
1 ATAATAAATAATTTTT
** *
2961 ATTTTAAGT-ATTTTT
1 ATAATAAATAATTTTT
*
2976 ATATTAACATAATATTTT
1 ATAATAA-ATAAT-TTTT
* *
2994 AATATTAAATATTATTATT
1 -ATAATAAATA--ATTTTT
* *
3013 AAAATATAATTATTTTT
1 ATAATA-AATAATTTTT
*
3030 -TATATTAATAATTTTT
1 ATA-ATAAATAATTTTT
3046 ATAATAAATAATTT
1 ATAATAAATAATTT
3060 CAATATATTT
Statistics
Matches: 75, Mismatches: 14, Indels: 19
0.69 0.13 0.18
Matches are distributed among these distances:
14 1 0.01
15 16 0.21
16 21 0.28
17 11 0.15
18 11 0.15
19 13 0.17
20 2 0.03
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.54
Consensus pattern (16 bp):
ATAATAAATAATTTTT
Found at i:3075 original size:26 final size:26
Alignment explanation
Indices: 3036--3099 Score: 87
Period size: 26 Copynumber: 2.5 Consensus size: 26
3026 TTTTTATATT
*
3036 AATA-ATTTTTATAATAAATAATTTC
1 AATATATTTTAATAATAAATAATTTC
*
3061 AATATATTTTAATAATAAATAATTTT
1 AATATATTTTAATAATAAATAATTTC
*
3087 TA-ATATTTTAATA
1 AATATATTTTAATA
3100 GTTATATTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
25 15 0.43
26 20 0.57
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (26 bp):
AATATATTTTAATAATAAATAATTTC
Found at i:8020 original size:17 final size:18
Alignment explanation
Indices: 8000--8044 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
7990 TTTACATATT
8000 ATTTTTTTCAATA-C-ACA
1 ATTTTTTTCAA-AGCAACA
*
8017 ATTTTGTTCAAAGCAACA
1 ATTTTTTTCAAAGCAACA
8035 ATTTTTTTCA
1 ATTTTTTTCA
8045 GTGTGTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 1 0.04
17 11 0.46
18 12 0.50
ACGTcount: A:0.33, C:0.16, G:0.04, T:0.47
Consensus pattern (18 bp):
ATTTTTTTCAAAGCAACA
Found at i:10845 original size:75 final size:75
Alignment explanation
Indices: 10704--10851 Score: 230
Period size: 73 Copynumber: 2.0 Consensus size: 75
10694 TATTTTATTA
* **
10704 TTTTTATTATTATTTAAATTTCGTGGAATCAATGCAGAAAAAAAACCAAAATTTTCTATGAATAT
1 TTTTTATTATTATTTAAATTTAGTGGAATCAATGCAGAAAAAAAACCAAAAAATTCTATGAATAT
10769 ATATATATAG
66 ATATATATAG
*
10779 TTTTTATT-TTATTTAAATTTAGTTGG-ATCAATGTAG-AAAAAAACCAAAAAATTCTATGAATA
1 TTTTTATTATTATTTAAATTTAG-TGGAATCAATGCAGAAAAAAAACCAAAAAATTCTATGAATA
10841 TATATATATAG
65 TATATATATAG
10852 ATATATATAT
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
73 35 0.51
74 22 0.32
75 11 0.16
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.41
Consensus pattern (75 bp):
TTTTTATTATTATTTAAATTTAGTGGAATCAATGCAGAAAAAAAACCAAAAAATTCTATGAATAT
ATATATATAG
Found at i:21709 original size:129 final size:126
Alignment explanation
Indices: 21494--21803 Score: 310
Period size: 129 Copynumber: 2.4 Consensus size: 126
21484 TATTTAACAT
* * *
21494 TTAATA-AGAATTTAATAG-GGTTATTATAGTGAA-TTTAAAACAAAATTTCACATGTCAAATTT
1 TTAATATATAATTTAATAGATG-TATTATAGT-AATTTTAAAACAAAATATCACATGTCAAATTT
* * * * *
21556 TTATTAAGCAACGGCCAAGGTATTTTAGTAATTTAGA-ATGT-AGTTAATTTTATATGATGTTAA
64 TTATAAACCAACGGCCAAGATATTTTAATAATTTA-ATATGTGA-TTAA-TTT-TATGATATTAA
21619 AA
125 AA
* * * *
21621 TTTCATATGTAATTTAATA-ATGATATTATAGTAATTTTTAAATAAAATATCACATGTCAAATTT
1 -TTAATATATAATTTAATAGATG-TATTATAGTAATTTTAAAACAAAATATCACATGTCAAATTT
** * * *
21685 TTATAAACCAATTG-TAATGATATTTTAATACTTTAATATGTGATTAATTTTATGTTATTAAAA
64 TTATAAACCAACGGCCAA-GATATTTTAATAATTTAATATGTGATTAATTTTATGATATTAAAA
* * *
21748 TTAATATATAATTTAATAGATGTGTTATAGTAATTTTGAAACAAAATACCACATGT
1 TTAATATATAATTTAATAGATGTATTATAGTAATTTTAAAACAAAATATCACATGT
21804 TAACTTCTTA
Statistics
Matches: 151, Mismatches: 24, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
126 46 0.30
127 14 0.09
128 13 0.09
129 77 0.51
130 1 0.01
ACGTcount: A:0.41, C:0.06, G:0.11, T:0.42
Consensus pattern (126 bp):
TTAATATATAATTTAATAGATGTATTATAGTAATTTTAAAACAAAATATCACATGTCAAATTTTT
ATAAACCAACGGCCAAGATATTTTAATAATTTAATATGTGATTAATTTTATGATATTAAAA
Found at i:22247 original size:58 final size:59
Alignment explanation
Indices: 22178--22308 Score: 144
Period size: 58 Copynumber: 2.2 Consensus size: 59
22168 TCATAAAAAC
*
22178 ATTTTTGTAATTACGGT-GAAAGAGTATTATAGTAATTTTGA-TCAAT-TATGAGAAAT-GT
1 ATTTTTGTAATTA-GGTAGAAAG-GTATTATAGTAA-TTTGAGTCAATATAAGAGAAATGGT
* * * *
22236 ATTTTTATAATTATGTCAGGAAGGTATTATAGTAATTTGAGTCAATAATAAGAGAATTGGT
1 ATTTTTGTAATTAGGT-AGAAAGGTATTATAGTAATTTGAGTCAAT-ATAAGAGAAATGGT
22297 ATTTTTGTAATT
1 ATTTTTGTAATT
22309 TAATAATAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
57 7 0.11
58 29 0.48
59 4 0.07
60 8 0.13
61 13 0.21
ACGTcount: A:0.36, C:0.03, G:0.18, T:0.43
Consensus pattern (59 bp):
ATTTTTGTAATTAGGTAGAAAGGTATTATAGTAATTTGAGTCAATATAAGAGAAATGGT
Found at i:22393 original size:55 final size:51
Alignment explanation
Indices: 22325--22500 Score: 128
Period size: 55 Copynumber: 3.4 Consensus size: 51
22315 TAAAAAGAAC
*
22325 ATTTTTATAATTATGGTACGAGGATATTATAATAAATAATTATAAGAGAATATGT
1 ATTTTTATAATTATGGTACGA-G--AGTATAATAAATAATT-TAAGAGAATATGT
* * * * *
22380 ATTTTTTTTATTATGGTATGAGAGTATAATAATTAATTTAAGAG-A-A-GA
1 ATTTTTATAATTATGGTACGAGAGTATAATAAATAATTTAAGAGAATATGT
* * * * *
22428 ATTTTCTATAATTATGATATG-GAGTATTATAGTAAATAATTATAAAAGAAAAAGAT
1 ATTTT-TATAATTATGGTACGAGAGTA-TA-A-TAAATAATT-TAAGAGAATATG-T
22484 ATTTTT-TAATTATGGTA
1 ATTTTTATAATTATGGTA
22501 TGAAGGCAAA
Statistics
Matches: 99, Mismatches: 13, Indels: 19
0.76 0.10 0.15
Matches are distributed among these distances:
48 11 0.11
49 15 0.15
50 2 0.02
51 14 0.14
52 19 0.19
53 1 0.01
54 12 0.12
55 20 0.20
56 5 0.05
ACGTcount: A:0.43, C:0.01, G:0.14, T:0.42
Consensus pattern (51 bp):
ATTTTTATAATTATGGTACGAGAGTATAATAAATAATTTAAGAGAATATGT
Found at i:22432 original size:48 final size:52
Alignment explanation
Indices: 22352--22502 Score: 127
Period size: 52 Copynumber: 2.9 Consensus size: 52
22342 ACGAGGATAT
* * * *
22352 TATAATAAATAATTATAAGAGAATATGTATTTT-TTTTATTATGGTATGAGAG
1 TATAATAAATAATTATAAGAGAATATGAATTTTCTATAATTATGATATG-GAG
*
22404 TATAATAATTAATT-TAAGAG-A-A-GAATTTTCTATAATTATGATATGGAG
1 TATAATAAATAATTATAAGAGAATATGAATTTTCTATAATTATGATATGGAG
* * * *
22452 TATTATAGTAAATAATTATAAAAGAAAAAGATATTTT-T-TAATTATGGTATG
1 TA-TA-A-TAAATAATTATAAGAGAATATGA-ATTTTCTATAATTATGATATG
22503 AAGGCAAAAT
Statistics
Matches: 82, Mismatches: 8, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
48 11 0.13
49 15 0.18
50 2 0.02
51 14 0.17
52 18 0.22
53 1 0.01
54 13 0.16
55 3 0.04
56 5 0.06
ACGTcount: A:0.44, C:0.01, G:0.14, T:0.42
Consensus pattern (52 bp):
TATAATAAATAATTATAAGAGAATATGAATTTTCTATAATTATGATATGGAG
Found at i:26928 original size:30 final size:29
Alignment explanation
Indices: 26894--26952 Score: 68
Period size: 29 Copynumber: 2.0 Consensus size: 29
26884 TAAAAAATGC
26894 AATTACCTAATGCAAA-TAT-ATGTCATTTCT
1 AATTA-CTAAT-CAAATTATAATGT-ATTTCT
*
26924 AATTAGTAATCAAATTATAATGTATTTCT
1 AATTACTAATCAAATTATAATGTATTTCT
26953 TCCTTTAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
28 4 0.15
29 13 0.50
30 9 0.35
ACGTcount: A:0.39, C:0.12, G:0.07, T:0.42
Consensus pattern (29 bp):
AATTACTAATCAAATTATAATGTATTTCT
Found at i:30147 original size:2 final size:2
Alignment explanation
Indices: 30140--30169 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
30130 TTGTTCATGC
*
30140 TA TA TA TA GA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
30170 AGGTTTTGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Done.