genome.fa.s277.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168102.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_348, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32450

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2824--2883	30	2.0	30	96	0	111	40	8	10	41	1.69
9590--9849	129	2.0	129	94	4	461	8	18	17	55	1.67
10057--11053	180	5.5	179	75	7	818	42	6	8	42	1.60
10090--11053	361	2.7	356	79	7	1025	42	6	8	42	1.60
10811--11352	301	1.8	301	81	4	680	42	7	10	40	1.67
11643--12262	324	1.9	325	80	6	713	40	8	8	42	1.64
12530--13537	181	5.6	181	76	7	756	39	8	9	41	1.69
12500--13400	361	2.5	360	77	7	809	39	8	9	41	1.68
13731--13756	8	3.2	8	100	0	52	50	0	0	50	1.00
13675--13758	31	2.8	30	78	18	95	51	1	0	47	1.08
14336--14981	358	1.8	355	80	6	786	43	8	8	39	1.66
13936--14988	176	5.9	176	75	9	835	42	9	8	39	1.69
15010--15048	16	2.4	16	82	4	51	48	2	0	48	1.15
15253--15296	18	2.3	18	88	7	61	54	0	0	45	0.99
15969--15998	14	2.1	14	93	0	51	53	0	0	46	1.00
16156--16224	16	4.1	16	72	17	59	50	1	1	46	1.19
16455--16502	23	2.0	24	88	4	71	43	0	2	54	1.12
17581--17731	18	8.1	18	65	20	53	44	3	2	49	1.35
17754--17811	13	4.5	13	75	14	50	43	0	1	55	1.10
17748--17813	25	2.6	25	79	15	73	43	0	1	54	1.09
17781--17815	18	1.9	18	94	0	61	45	0	0	54	0.99
17868--17919	13	4.2	12	77	18	54	55	3	0	40	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19069--19156	27	3.1	27	71	15	70	45	1	3	50	1.26
19584--19631	22	2.0	22	84	11	60	54	0	2	43	1.12
20098--20153	21	2.8	20	73	10	51	42	3	0	53	1.18
20322--20378	21	2.7	22	74	15	57	49	3	3	43	1.36
20702--20749	25	1.9	25	83	8	62	50	4	0	45	1.21
20821--21259	182	2.5	174	79	8	447	40	10	8	40	1.71
20956--21349	182	2.2	179	81	5	454	41	10	7	40	1.68
21315--21353	21	1.9	20	84	5	51	48	7	10	33	1.66
21405--22460	181	5.9	180	74	7	711	41	9	8	40	1.68
22587--22660	26	2.9	25	76	11	71	48	2	0	48	1.15
22645--22737	38	2.3	39	81	17	95	47	5	2	45	1.37
23021--23053	12	2.6	13	85	9	50	57	0	0	42	0.98
23464--23494	14	2.3	13	94	5	53	54	0	0	45	0.99
23626--23680	17	3.1	17	75	14	58	49	0	1	49	1.11
24132--24177	22	2.1	22	84	8	58	50	0	2	47	1.13
24258--24701	179	2.5	181	81	6	533	41	9	7	41	1.66
25098--25128	16	1.9	16	93	0	53	48	0	3	48	1.17
25562--25624	16	4.0	16	72	12	58	50	3	0	46	1.17
25596--25674	34	2.4	34	83	12	101	48	0	2	49	1.14
25785--25835	24	2.2	22	86	6	66	50	0	0	49	1.00
25958--25998	21	2.0	21	90	0	64	56	0	0	43	0.99
27088--27134	18	2.5	19	82	6	60	53	0	2	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27033--27181	18	8.0	18	65	22	58	48	1	4	45	1.29
27471--27519	22	2.1	24	82	17	59	51	2	0	46	1.12
27527--27555	10	2.7	11	89	10	51	55	6	0	37	1.27
27775--27808	16	2.1	17	94	5	61	47	0	0	52	1.00
27885--27922	19	2.0	20	89	5	60	47	2	5	44	1.39
28229--28271	17	2.6	16	73	20	52	48	0	0	51	1.00
28234--28268	17	2.0	18	88	5	54	45	0	0	54	0.99
28237--28417	42	4.4	40	66	14	93	50	1	1	45	1.21
28303--28353	26	2.0	26	84	0	66	54	1	0	43	1.11
28456--28541	14	6.1	14	74	22	74	50	0	1	48	1.08
28455--28535	27	2.9	27	80	17	94	50	0	1	48	1.08
28486--28535	18	2.9	17	76	23	59	52	0	0	48	1.00
28486--28556	18	3.8	18	75	18	58	47	0	1	50	1.09
28458--28579	5	29.0	4	71	19	56	47	0	1	50	1.16
28501--28625	45	2.7	45	74	20	109	45	2	3	48	1.31
28868--28904	14	2.5	15	87	12	51	45	2	5	45	1.40
29153--29186	16	2.0	16	88	11	50	44	0	0	55	0.99
29159--29198	21	1.9	21	85	10	55	45	2	0	52	1.14
29156--29203	21	2.3	20	80	16	53	45	2	0	52	1.12
29208--29257	15	3.3	15	74	23	50	44	2	0	54	1.11
29271--29308	20	1.9	20	94	0	67	55	2	0	42	1.14
29500--29580	33	2.5	33	79	16	91	43	2	0	54	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29600--29632	14	2.2	16	89	10	52	48	0	0	51	1.00
29740--29774	17	2.1	16	89	5	52	45	0	2	51	1.16
29964--30034	23	3.0	23	70	24	58	46	1	1	50	1.18
30603--30634	16	1.9	17	93	6	57	40	0	0	59	0.97
30757--30788	17	1.9	16	93	6	55	43	0	3	53	1.16
30925--30974	23	2.1	25	85	7	68	46	2	0	52	1.12
31066--31110	14	3.3	14	74	25	51	51	0	0	48	1.00
31160--31202	20	2.3	18	88	8	59	44	0	2	53	1.13
31213--31270	22	2.4	25	80	11	68	50	3	0	46	1.18
31410--31477	34	2.0	35	82	8	86	47	5	1	45	1.36
31859--31904	26	1.9	24	83	16	60	52	0	4	43	1.21
31925--32189	10	27.4	10	68	25	85	48	0	1	49	1.13
31960--32100	41	3.3	42	72	19	105	51	0	0	48	1.05
31884--32090	44	4.6	44	71	22	128	49	0	0	49	1.07
31989--32111	15	8.2	15	71	21	64	53	0	0	45	1.06
31986--32138	57	2.7	56	79	13	152	51	0	0	47	1.10

Tables:   1

The End!