genome.fa.s278.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168103.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_349, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32276

Tables:   1   

This is table  1  of  1  ( 111 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104--148	18	2.5	18	82	10	56	51	0	2	46	1.13
372--441	20	3.4	19	71	13	59	42	2	5	48	1.41
449--490	17	2.4	18	84	8	59	35	0	2	61	1.09
1257--1314	16	3.4	17	74	9	55	74	8	8	8	1.23
1625--1722	45	2.2	43	80	15	110	68	1	11	19	1.26
1651--1702	19	2.7	19	80	14	54	73	0	5	21	1.04
2092--2160	18	3.8	18	75	14	70	76	4	11	7	1.12
2423--2477	28	1.9	29	82	10	69	76	5	12	5	1.13
2814--2960	42	3.4	43	73	12	129	70	2	10	17	1.24
2914--3000	18	4.3	18	68	22	57	75	2	9	12	1.12
4012--4109	45	2.2	43	80	15	110	68	1	11	19	1.26
4038--4089	19	2.7	19	80	14	54	73	0	5	21	1.04
4169--4226	15	3.8	15	80	15	57	81	1	12	5	0.94
4170--4225	10	5.6	10	76	14	53	83	1	10	3	0.83
4157--4236	31	2.6	31	75	16	78	76	1	10	12	1.08
4422--4461	21	1.9	21	90	10	64	85	0	7	7	0.76
4808--4868	16	3.6	16	72	10	50	75	6	9	8	1.19
5205--5302	45	2.2	43	80	15	110	68	1	11	19	1.26
5231--5282	19	2.7	19	80	14	54	73	0	5	21	1.04
5346--5398	18	2.8	19	76	21	58	73	0	13	13	1.10
5629--5724	13	7.2	12	69	22	50	77	3	10	9	1.11
6127--6154	12	2.3	12	100	0	56	92	0	0	7	0.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6432--6483	19	2.7	19	80	14	54	73	0	5	21	1.04
6560--6627	12	5.6	13	70	26	60	79	1	13	5	0.98
6839--6882	20	2.1	21	83	4	54	11	6	0	81	0.86
7114--7168	29	1.9	28	81	3	65	45	1	5	47	1.36
7287--7327	19	2.2	19	86	0	55	46	0	4	48	1.23
7416--7455	19	2.1	19	86	9	55	55	0	2	42	1.13
10051--10197	73	2.0	73	87	7	210	45	7	9	37	1.65
10274--10329	28	2.0	28	82	6	69	42	0	1	55	1.10
10708--10759	27	1.9	27	84	7	70	46	0	0	53	1.00
10706--10752	23	2.0	23	83	0	58	48	0	0	51	1.00
10895--10984	23	4.3	22	76	14	75	47	0	1	51	1.08
10917--10967	16	3.1	16	75	24	52	41	0	1	56	1.10
10866--10968	19	5.5	19	71	24	76	44	0	1	52	1.18
11029--11078	9	5.3	10	79	11	61	46	0	0	54	1.00
11035--11102	3	22.0	3	71	16	50	39	0	2	57	1.14
11034--11101	28	2.3	30	87	12	97	41	0	2	55	1.15
11029--11086	21	3.0	21	74	23	56	43	0	1	55	1.10
11142--11180	17	2.3	16	86	8	51	48	2	2	46	1.29
11456--11524	18	4.2	16	71	28	56	49	0	0	50	1.00
11455--11519	30	2.1	32	91	8	107	47	0	0	52	1.00
11455--11519	32	2.1	30	86	13	87	47	0	0	52	1.00
11460--11536	14	5.2	14	70	25	52	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11492--11530	20	2.0	20	90	10	62	51	0	0	48	1.00
12128--12156	14	2.0	15	93	6	51	44	6	0	48	1.29
12968--13011	21	2.1	21	91	8	72	59	0	0	40	0.98
12966--13036	25	2.8	25	80	12	83	57	1	1	39	1.16
12966--13046	25	3.1	28	81	13	75	56	1	2	39	1.20
13123--13170	22	2.2	23	81	7	55	52	6	0	41	1.27
13341--13379	21	1.9	20	89	5	60	48	0	2	48	1.15
13363--13432	25	2.7	25	82	10	70	45	2	2	48	1.32
13454--13492	20	2.0	20	85	10	53	33	0	7	58	1.26
14924--15050	52	2.4	54	88	4	195	27	17	10	44	1.81
16974--17017	15	2.8	16	79	6	54	54	0	0	45	0.99
17035--17067	9	3.5	10	92	8	52	42	0	0	57	0.98
17194--17260	23	3.0	22	77	16	66	59	2	2	34	1.28
17462--17502	19	2.3	17	83	8	55	48	4	0	46	1.23
17615--17659	20	2.4	18	82	13	63	48	0	6	44	1.29
17619--17656	20	1.9	20	94	0	67	47	0	7	44	1.32
17767--17829	24	2.6	23	78	16	65	52	1	1	44	1.20
18218--18260	19	2.2	20	84	12	54	44	4	0	51	1.22
18670--18708	19	2.1	18	90	4	60	56	0	0	43	0.99
19026--19152	11	11.5	11	67	14	64	54	0	3	41	1.22
19026--19103	27	3.0	25	71	15	77	55	0	1	43	1.08
19053--19094	18	2.3	18	80	8	50	50	0	2	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19371--19411	20	2.0	21	86	13	59	43	2	0	53	1.13
20662--21017	180	2.0	179	83	1	442	41	10	7	40	1.68
21151--21216	21	2.9	24	74	19	68	50	3	0	46	1.16
21483--21701	120	1.8	121	82	3	280	45	9	11	33	1.73
21341--21881	300	1.8	300	84	1	753	42	8	10	37	1.71
21585--22337	180	4.2	180	84	5	844	41	9	10	37	1.72
22006--22038	18	1.9	17	88	11	50	42	6	12	39	1.67
22682--22732	23	2.2	23	82	6	59	39	3	1	54	1.30
23028--23078	18	2.7	19	79	11	52	50	3	3	41	1.39
23139--23199	29	2.0	30	87	6	88	47	3	0	49	1.18
23132--23231	16	7.1	14	68	22	50	49	2	1	48	1.19
23279--23370	14	6.9	13	74	8	51	52	0	0	47	1.00
23355--23413	21	2.7	21	84	5	73	45	5	3	45	1.42
23396--23441	17	2.8	16	78	15	58	52	0	4	43	1.21
23502--23565	20	3.3	19	76	20	60	50	4	1	43	1.32
23676--23714	16	2.3	18	86	8	55	46	5	0	48	1.24
23861--23934	30	2.5	31	81	16	77	47	0	0	52	1.00
23922--23975	19	3.0	19	79	15	62	37	3	0	59	1.15
23952--24025	27	2.6	28	75	10	71	41	4	0	54	1.19
24095--24191	46	2.1	45	81	12	110	50	2	0	47	1.12
24046--24212	46	4.0	41	68	21	105	48	1	0	49	1.16
24220--24288	36	1.9	36	82	11	88	55	1	2	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25178--25264	34	2.6	34	80	8	90	47	0	0	52	1.00
25490--25537	12	3.6	13	75	13	53	50	0	2	47	1.12
25568--25613	24	1.9	24	86	8	67	39	2	4	54	1.32
25913--25948	18	2.0	19	89	10	58	47	5	0	47	1.25
26459--26538	39	2.1	37	83	4	97	55	2	1	41	1.21
26475--26549	8	9.6	8	75	15	59	56	1	0	42	1.08
26466--26548	35	2.4	36	80	11	93	55	1	1	42	1.15
26467--26569	18	5.6	18	72	21	56	51	0	1	45	1.19
27853--27915	16	4.0	15	78	13	56	46	4	0	49	1.23
28640--28698	17	3.2	18	80	9	57	40	5	1	52	1.33
28938--28980	22	2.0	21	81	4	50	51	0	2	46	1.13
28973--29019	19	2.5	19	82	3	60	40	2	0	57	1.11
29825--29892	19	3.4	21	67	20	56	51	0	0	48	1.00
29836--29887	19	2.8	18	81	18	70	48	0	0	51	1.00
29928--29965	14	2.7	14	84	8	51	39	2	0	57	1.12
30408--30444	17	2.2	17	90	9	58	32	0	0	67	0.91
31548--31603	29	2.0	27	82	6	67	51	5	1	41	1.35
31668--31735	14	5.0	14	72	12	61	52	1	0	45	1.09
31668--31727	5	12.6	5	75	16	56	53	1	0	45	1.10
31671--31722	19	2.8	18	85	8	61	55	1	0	42	1.10
31668--31737	28	2.5	28	84	11	90	52	1	0	45	1.09
31783--31836	24	2.2	24	78	12	58	55	0	1	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31824--31884	25	2.5	24	76	7	59	52	1	3	42	1.27

Tables:   1

The End!