Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168104.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_35, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 465013
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Warning! 7000 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:861 original size:26 final size:26
Alignment explanation
Indices: 825--882 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
815 TTCGGTCCGA
*
825 GCTTAGACTGGGAATGAACTCCATAT
1 GCTTAAACTGGGAATGAACTCCATAT
*
851 GCTTAAACTGGGAATGAACTCCGTAT
1 GCTTAAACTGGGAATGAACTCCATAT
877 GCTTAA
1 GCTTAA
883 GTCAACCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (26 bp):
GCTTAAACTGGGAATGAACTCCATAT
Found at i:1215 original size:26 final size:26
Alignment explanation
Indices: 1167--1217 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
1157 GGTCTAAGCA
*
1167 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTACGTATGCT
* *
1193 TAGACTGGGAATGAATTATGTATGC
1 TAGACTGGGAATGAACTACGTATGC
1218 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTACGTATGCT
Found at i:2004 original size:44 final size:44
Alignment explanation
Indices: 1920--2004 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
1910 ACAACATCGA
** ** *
1920 CACATGCTGGGCCTTGGTGTGGGCGGTTACCTTTAGCACCACCG
1 CACATGCTGGGCCTTGGTGTGGGCACTTACCTCGACCACCACCG
* *
1964 CACATGTTGGGTCTTGGTGTGGGCACTTACCTCGACCACCA
1 CACATGCTGGGCCTTGGTGTGGGCACTTACCTCGACCACCA
2005 TCAGTAGATG
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.15, C:0.29, G:0.29, T:0.26
Consensus pattern (44 bp):
CACATGCTGGGCCTTGGTGTGGGCACTTACCTCGACCACCACCG
Found at i:3297 original size:19 final size:19
Alignment explanation
Indices: 3273--3309 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
3263 TTGTGAGTAG
*
3273 GAAGCTATGGTTGTGGGCA
1 GAAGCTATGGTTGCGGGCA
*
3292 GAAGCTGTGGTTGCGGGC
1 GAAGCTATGGTTGCGGGC
3310 TTGGCCCAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.14, G:0.46, T:0.24
Consensus pattern (19 bp):
GAAGCTATGGTTGCGGGCA
Found at i:10922 original size:171 final size:170
Alignment explanation
Indices: 10552--11092 Score: 509
Period size: 171 Copynumber: 3.2 Consensus size: 170
10542 TCCAGCTAGG
* * * * * *
10552 GCTTAGACTGGGAATGAACACCATATGCCTAAGTCAACCCACGAAATAAGAATACGGGTATTGAG
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTACGAAATAAGCATGCGGGCACTGAG
* * * * * * * *
10617 CTGGCTAAAGAGGTAGGACGC-GAAGCCGACGATTGATCCGGTCCCCTTCTGCGTGCTGTCGATC
66 CCGACTAAAGAGGTAGGATGCACAAGCCGAGGATCGA-CCAGTCCCCCTCTGCGTGCTGTCGATC
* * * * * * * * *
10681 CTGCTGCAAGTCTTACTGCCCCAACCCTCAGTTGGGTCTGA
130 CTACTGCAGGTCCTGCTACCACAACCCTCAATTCGATCTGA
* ** * *
10722 GCTTTGACTGGGAATGAACTCTGTATGCCTAAGTTAACCTACGAAATGAGCATGCGGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTACGAAATAAGCATGCGGGCACTGAG
*
10787 CCGACCAAAGAGGTAGGATGCACAAGCCGAGGATCGACCTAGTCCCCCTCTGCGTGCTGTCGATC
66 CCGACTAAAGAGGTAGGATGCACAAGCCGAGGATCGACC-AGTCCCCCTCTGCGTGCTGTCGATC
**
10852 CTACTGTGGGTCCTGCTACCACAACCCTCAATTCGATCTGA
130 CTACTGCAGGTCCTGCTACCACAACCCTCAATTCGATCTGA
* * * * ** *
10893 TCTTAGACTAGGAATGGACTCCATATGCCTAAGTCAACCTACGAAACAAGCGGGCAGGCACT-A-
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTACGAAATAAGCATGCGGGCACTGAG
* * * ** * * *
10956 CACCAGCTAAAGAGGCAGGATGCACAAGCTGAGGATCGGTCAGGTTCCCCTCTACGTGTTG-CGG
66 C-CGA-CTAAAGAGGTAGGATGCACAAGCCGAGGATCGACCA-GTCCCCCTCTGCGTGCTGTC-G
* * * *
11020 ATCCTATTGCAGGTCCTGCTACCATAACCCTCGA-TCTGGT-TGAA
127 ATCCTACTGCAGGTCCTGCTACCACAACCCTCAATTC-GATCTG-A
*
11064 GCTTAGACTGGGAATGAACTCTATATGCC
1 GCTTAGACTGGGAATGAACTCCATATGCC
11093 AAACAATTTT
Statistics
Matches: 301, Mismatches: 62, Indels: 15
0.80 0.16 0.04
Matches are distributed among these distances:
169 1 0.00
170 82 0.27
171 218 0.72
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (170 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTACGAAATAAGCATGCGGGCACTGAG
CCGACTAAAGAGGTAGGATGCACAAGCCGAGGATCGACCAGTCCCCCTCTGCGTGCTGTCGATCC
TACTGCAGGTCCTGCTACCACAACCCTCAATTCGATCTGA
Found at i:17702 original size:45 final size:45
Alignment explanation
Indices: 17611--17704 Score: 118
Period size: 45 Copynumber: 2.1 Consensus size: 45
17601 TGCCTCAAGC
* * ** *
17611 TGGTGCTGGCAGTTGCCTCAACCACCATCAGCACATGTTGGGCCT
1 TGGTGCTGGCAGTTGCCTCAACCAACATCAGCACAAGCCGGCCCT
*
17656 TGGTGCTGGCA-TATGCCTCAACCAACATCGGCACAAGCCGGCCCT
1 TGGTGCTGGCAGT-TGCCTCAACCAACATCAGCACAAGCCGGCCCT
17701 TGGT
1 TGGT
17705 ACGGGCACTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 1 0.02
45 41 0.98
ACGTcount: A:0.19, C:0.32, G:0.27, T:0.22
Consensus pattern (45 bp):
TGGTGCTGGCAGTTGCCTCAACCAACATCAGCACAAGCCGGCCCT
Found at i:24957 original size:45 final size:46
Alignment explanation
Indices: 24862--24968 Score: 121
Period size: 45 Copynumber: 2.4 Consensus size: 46
24852 TGGCACGTAC
* * * **
24862 CGATGGTGGTCCAGGCAAGTGCCTGTACCAATGGCCAGCTTGTGAT
1 CGATGGTGGTCGAGGCAAGTGCCTGCACCAATGGCCAACACGTGAT
*
24908 -GATGGTGGTCGAGGCATGTGCCTGCACCAA-GGCCCAACACGTG-T
1 CGATGGTGGTCGAGGCAAGTGCCTGCACCAATGG-CCAACACGTGAT
*
24952 CGATGGTGCTCGAGGCA
1 CGATGGTGGTCGAGGCA
24969 GCCACCCATA
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
44 3 0.06
45 49 0.94
ACGTcount: A:0.20, C:0.25, G:0.35, T:0.21
Consensus pattern (46 bp):
CGATGGTGGTCGAGGCAAGTGCCTGCACCAATGGCCAACACGTGAT
Found at i:24998 original size:45 final size:46
Alignment explanation
Indices: 24949--25049 Score: 109
Period size: 45 Copynumber: 2.2 Consensus size: 46
24939 GCCCAACACG
* * *
24949 TGTCGATGGTGC-TCGAGG-CAGCCACCCATACCAAAGGCCATCTTT
1 TGTCGATGGTGCATCGAGGTAAG-CACCCATACCAAAGGCCAACTTA
* * *
24994 TGTCGATGCT-CATCGAGGTAAGCGCCTATACCAAAGGCCAACTTA
1 TGTCGATGGTGCATCGAGGTAAGCACCCATACCAAAGGCCAACTTA
*
25039 TGCCGATGGTG
1 TGTCGATGGTG
25050 GTCGCGGTAA
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
44 1 0.02
45 42 0.93
46 2 0.04
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.23
Consensus pattern (46 bp):
TGTCGATGGTGCATCGAGGTAAGCACCCATACCAAAGGCCAACTTA
Found at i:25906 original size:148 final size:147
Alignment explanation
Indices: 25631--25906 Score: 369
Period size: 148 Copynumber: 1.9 Consensus size: 147
25621 GACTATTGTA
*
25631 TGAATTTAAAAGCCATAAAAATGGCATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCCACC
1 TGAATTTAAAAGCCATAAAAATGGCATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCCACA
* * *
25696 TACCACCCGATCGTGGCACGTATGGTGCTCGGCTGGGCTTAGGACACCTGCGCATGGTGTGCGGG
66 TACCACCCGATCGTGGCACGTATGGTGCTCGGCTGAGCTCAGGACA-CTGCGCATCGTGTGCGGG
25761 TGCTGGGGAGTGCTCATG
130 TGCTGGGGAGTGCTCATG
* * * * *
25779 TGAATTTACAGGCCATAAAAATGGTATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACA
1 TGAATTTAAAAGCCATAAAAATGGCATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCCACA
* * * *
25844 TACCACCTGGTCGTGGCGCGTATTGGTGCTCGACGC-GAGCTCAGGATA-TGCGC-TCGTGGTGC
66 TACCACCCGATCGTGGCACGTA-TGGTGCTCG--GCTGAGCTCAGGACACTGCGCATCGT-GTGC
25906 G
127 G
25907 TGAGCATTAG
Statistics
Matches: 111, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
147 3 0.03
148 88 0.79
149 9 0.08
150 9 0.08
151 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (147 bp):
TGAATTTAAAAGCCATAAAAATGGCATTGGCATAGCAGAAATATGAAGATGTGCCTAAACCCACA
TACCACCCGATCGTGGCACGTATGGTGCTCGGCTGAGCTCAGGACACTGCGCATCGTGTGCGGGT
GCTGGGGAGTGCTCATG
Found at i:26346 original size:171 final size:171
Alignment explanation
Indices: 26111--26498 Score: 395
Period size: 171 Copynumber: 2.3 Consensus size: 171
26101 CGTCCACTTG
* * * * * *
26111 TTTCGTAGGTTGACTTAGCCATACGGAGTTCATTCCTAGTTTAAGATCAGATTGAATTGAGGGTT
1 TTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTCAGATAGAATCGAGGGTT
* ** * * * * ** *
26176 GTGGCAACAGGGCCTGTAGCAAGATCCATAGCACGTAGAAG-GGGATCGGGCTGATCCTC-GACT
66 GAGGCAACAGAACCCGTAGCAAGATCCACAGCACGCA-AAGAGGCATCGAACCGATCCTCAG-CT
* * *
26239 TACGCATCTTGCCTCTCTAGCCAGCTCAATGCCTGCACGCTCA
129 TACGCATCCTACCTCTCTAGCCAACTCAATGCCTGCACGCTCA
* **
26282 TTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCTTGGATCAG-ATCGAGGGT
1 TTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTCAGAT-AGAATCGAGGGT
* * * * *
26346 TGAGGTAGCAGAACCCGTAGTAGGATCGACAGCACGCAAAGAGGCATCGAACCGATCCTCAGCTT
65 TGAGGCAACAGAACCCGTAGCAAGATCCACAGCACGCAAAGAGGCATCGAACCGATCCTCAGCTT
* * * * **
26411 ACGCATCCTACCTCTTTAGCCAACTCAGTGCCTGTATGCTTG
130 ACGCATCCTACCTCTCTAGCCAACTCAATGCCTGCACGCTCA
* * * *
26453 TTTCATGGGTTAACTTAGGCATATGGAGTTCATTCCCAGTCTAAGC
1 TTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
26499 CCCAGCTGGA
Statistics
Matches: 176, Mismatches: 38, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
170 3 0.02
171 171 0.97
172 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.25, T:0.27
Consensus pattern (171 bp):
TTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTCAGATAGAATCGAGGGTT
GAGGCAACAGAACCCGTAGCAAGATCCACAGCACGCAAAGAGGCATCGAACCGATCCTCAGCTTA
CGCATCCTACCTCTCTAGCCAACTCAATGCCTGCACGCTCA
Found at i:26804 original size:158 final size:159
Alignment explanation
Indices: 26434--26804 Score: 374
Period size: 158 Copynumber: 2.3 Consensus size: 159
26424 CTTTAGCCAA
* * * * * *
26434 CTCAGTGCCTGTATGCTTGTTTCATGGGTTAACTTAGGCATATGGAGTTCATTCCCAGTCTAAGC
1 CTCAGTGCCCGTATGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGACTAAGC
* *
26499 CCCAGCTGGATCGAGGGACTCGTAACAAGATCCGACAACACATAGAGAGGGATCAGGCTGATCCT
66 CCCAGCTGGATCGAGGGACCCGTAACAAGATCCGACAACACATAGAGAGGGATCAGGATGATCCT
* * *
26564 CAGCTTGCGTATTCTGCCTCTCTGGCTGG
131 CAGCTTACGTATTCTGCCTCTCTCGATGG
* ** * * * * * *
26593 CTCAGCGCCCGTACACTCGTTTCGTAGGTTGAGTTAGGCATACAAAGTTCATTCCTAGACTAAGG
1 CTCAGTGCCCGTATGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGACTAAGC
* * * * ** * *
26658 CCCAG-TCGGATCGAGGGACCCGTAGCAGGATCTG-TAGTACATCGAGAGGGA-CTGGATCGATC
66 CCCAGCT-GGATCGAGGGACCCGTAACAAGATCCGACAACACATAGAGAGGGATCAGGAT-GATC
* *
26720 C-CTAGCTTACGTATTTTGGCTCT-TCGATCGG
129 CTC-AGCTTACGTATTCTGCCTCTCTCGAT-GG
* * *
26751 CTCAGTGCCCGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGTAGTGCATTC
1 CTCAGTGCCCGTATGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTC
26805 TTAATCTTGA
Statistics
Matches: 168, Mismatches: 40, Indels: 9
0.77 0.18 0.04
Matches are distributed among these distances:
157 8 0.05
158 82 0.49
159 78 0.46
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.27
Consensus pattern (159 bp):
CTCAGTGCCCGTATGCTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGACTAAGC
CCCAGCTGGATCGAGGGACCCGTAACAAGATCCGACAACACATAGAGAGGGATCAGGATGATCCT
CAGCTTACGTATTCTGCCTCTCTCGATGG
Found at i:32469 original size:45 final size:45
Alignment explanation
Indices: 32394--32509 Score: 144
Period size: 45 Copynumber: 2.6 Consensus size: 45
32384 TCAAGGCATG
* * * * *
32394 GCATGTGTCAATGGTGATCGAGGAAAGTGCCCGCACCAA-GCGTCA
1 GCATGTGCCAATGGTGGTCGAGGCAAGTGCCCGCAACAAGGC-CCA
* * *
32439 GCTTGTGCTAATGGTGGTCGAGGCATGTGCCCGCAACAAGGCCCA
1 GCATGTGCCAATGGTGGTCGAGGCAAGTGCCCGCAACAAGGCCCA
32484 GCATGTGCCAATGGTGGTCGAGGCAA
1 GCATGTGCCAATGGTGGTCGAGGCAA
32510 CCACCCACAC
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 57 0.97
46 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.34, T:0.19
Consensus pattern (45 bp):
GCATGTGCCAATGGTGGTCGAGGCAAGTGCCCGCAACAAGGCCCA
Found at i:32788 original size:45 final size:44
Alignment explanation
Indices: 32738--32858 Score: 125
Period size: 45 Copynumber: 2.7 Consensus size: 44
32728 CCATCTTCTA
* * * * **
32738 TCGATGGTGGTCGAGGTAAGTGCCCGCACTAAGGGCCGACTTGTG
1 TCGATGGTGGTCGAGGTAA-TGCCAGCACCAAGGCCCAACACGTG
* *
32783 TCGATGTTGGTCGAGGCATATGCCAGCACCAAGGCCCAACACGTG
1 TCGATGGTGGTCGAGGTA-ATGCCAGCACCAAGGCCCAACACGTG
* *
32828 TCGATGGTGGTTGAGGTAACCGCCAGCACCA
1 TCGATGGTGGTCGAGGTAA-TGCCAGCACCA
32859 GCTCGAGGCA
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
44 1 0.02
45 60 0.97
46 1 0.02
ACGTcount: A:0.21, C:0.26, G:0.33, T:0.20
Consensus pattern (44 bp):
TCGATGGTGGTCGAGGTAATGCCAGCACCAAGGCCCAACACGTG
Found at i:37970 original size:20 final size:21
Alignment explanation
Indices: 37935--37977 Score: 79
Period size: 20 Copynumber: 2.1 Consensus size: 21
37925 ACTAAGGCCC
37935 AGCATGTGCTGATGGTGTTCG
1 AGCATGTGCTGATGGTGTTCG
37956 AGCATGTGC-GATGGTGTTCG
1 AGCATGTGCTGATGGTGTTCG
37976 AG
1 AG
37978 GTAACCTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 13 0.59
21 9 0.41
ACGTcount: A:0.16, C:0.14, G:0.40, T:0.30
Consensus pattern (21 bp):
AGCATGTGCTGATGGTGTTCG
Found at i:39340 original size:149 final size:149
Alignment explanation
Indices: 39050--39341 Score: 347
Period size: 150 Copynumber: 2.0 Consensus size: 149
39040 GGCATAGCAG
*
39050 AAATATGAAGATGTGCCTAAACCCACCTACCACCTGATCGTGGCACGCATGGTGCTCGGCCCGAG
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGTGGCACGCATGGTGCTCGGCCCGAG
* * * * * * * * * *
39115 CTTAGGACACCTGTGCCTGGTGTGCGGGCACTAGGGAGTGCTCACGTGACTTCACTAGCCATAAA
66 CTCAGGACACCCGCGACTGCTGCGCGGGCACTAGGGAGGGCTCACATGAATTCACTAGCCACAAA
39180 AATGGTATTGGCACGGTAA
131 AATGGTATTGGCACGGTAA
* * * * *
39199 AAATATGAAGATGTTCCTAAACCCACCTACCACCCGATCGTGGCGCGTATTGGTGTTTGGCCC-A
1 AAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGTGGCACGCA-TGGTGCTCGGCCCGA
* * * * *
39263 GGCTCAGGACACCCGCGAGTGCTGCGCGGGCATTGGGGAGGGCTCATATGAATTCA-TGGGCCAC
65 -GCTCAGGACACCCGCGACTGCTGCGCGGGCACTAGGGAGGGCTCACATGAATTCACT-AGCCAC
39327 AAAAATGGT-TTGGCA
128 AAAAATGGTATTGGCA
39342 TATGGAGTTC
Statistics
Matches: 119, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
149 53 0.45
150 66 0.55
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (149 bp):
AAATATGAAGATGTGCCTAAACCCACCTACCACCCGATCGTGGCACGCATGGTGCTCGGCCCGAG
CTCAGGACACCCGCGACTGCTGCGCGGGCACTAGGGAGGGCTCACATGAATTCACTAGCCACAAA
AATGGTATTGGCACGGTAA
Found at i:39628 original size:170 final size:171
Alignment explanation
Indices: 39439--39807 Score: 400
Period size: 171 Copynumber: 2.2 Consensus size: 171
39429 AACCTGACCT
* * * **
39439 ATCCTCAGCTTGCGCATCCTACCTCTTTGGCTGG-TGTAGTGCCTGC-CGCTTGTTTCGTAGGTT
1 ATCCTCGGCTTGCGCATCCTACCTCTTTGGCTGGCT-CAGTGCCCGCACGCTCATTTCGTAGGTT
* * ** * * * * ** * *
39502 GACTTAGGTATATGGAGTCCATTCCTAGTCTAAGATCGGACCGGATTGAGGGTTGTGGTAGCAGG
65 AACTTAGGCATACAGAGTCCATTCCCAGTCAAAGATCAGACCGAACCGAGGGTTGGGGTAGCAAG
* * * * * *
39567 ACCCACAGCAGGATCGATAGCACACAGAAAGGGACTGGGTCG
130 ACCCACAGCAGGATCAACAACACACAGAAAGGGACCGGATCA
* * *
39609 ATCCTCGGCTTGTGCATCCTACCTCTTTGGTTGGCTCAGTGCCCGCATGCTCATTTCGTAGGTTA
1 ATCCTCGGCTTGCGCATCCTACCTCTTTGGCTGGCTCAGTGCCCGCACGCTCATTTCGTAGGTTA
* *
39674 ACTTAGGCATACAGAGTTCATTCCCAGTCAAAGCTCAGACCGAACCGAGGGTTGGGGTAGCAAGA
66 ACTTAGGCATACAGAGTCCATTCCCAGTCAAAGATCAGACCGAACCGAGGGTTGGGGTAGCAAGA
** * * *
39739 CTTACAGTAGGATCAACAACACGCAGAAGGGGACCGGATCA
131 CCCACAGCAGGATCAACAACACACAGAAAGGGACCGGATCA
* *
39780 ATCGTCGGCTTACGCATCCTACCTCTTT
1 ATCCTCGGCTTGCGCATCCTACCTCTTT
39808 AGCCAGCTTA
Statistics
Matches: 161, Mismatches: 36, Indels: 3
0.81 0.18 0.01
Matches are distributed among these distances:
170 39 0.24
171 122 0.76
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (171 bp):
ATCCTCGGCTTGCGCATCCTACCTCTTTGGCTGGCTCAGTGCCCGCACGCTCATTTCGTAGGTTA
ACTTAGGCATACAGAGTCCATTCCCAGTCAAAGATCAGACCGAACCGAGGGTTGGGGTAGCAAGA
CCCACAGCAGGATCAACAACACACAGAAAGGGACCGGATCA
Found at i:39835 original size:171 final size:171
Alignment explanation
Indices: 39491--39878 Score: 416
Period size: 171 Copynumber: 2.3 Consensus size: 171
39481 CTGCCGCTTG
* * * * * * **
39491 TTTCGTAGGTTGACTTAGGTATATGGAGTCCATTCCTAGTCTAAGATCGGACCGGATTGAGGGTT
1 TTTCGTAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCTCAGACCGAACCGAGGGTT
* * * * * * * * *
39556 GTGGTAGCAGGACCCACAGCAGGATCGATAGCACACAGAAAGGGACTGGGTCGATCCTCGGCTTG
66 GGGGTAGCAAGACCCACAGCAGGATCAACAACACACAGAAAGGGACCGGATCAATCCTCGGCTTA
* * *** * *
39621 TGCATCCTACCTCTTTGGTTGGCTCAGTGCCCGCATGCTCA
131 CGCATCCTACCTCTTTAGCCAGCTCAATACCCGCATGCTCA
* ** *
39662 TTTCGTAGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCAAAGCTCAGACCGAACCGAGGGTT
1 TTTCGTAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCTCAGACCGAACCGAGGGTT
** * * * *
39727 GGGGTAGCAAGACTTACAGTAGGATCAACAACACGCAGAAGGGGACCGGATCAATCGTCGGCTTA
66 GGGGTAGCAAGACCCACAGCAGGATCAACAACACACAGAAAGGGACCGGATCAATCCTCGGCTTA
* * *
39792 CGCATCCTACCTCTTTAGCCAGCTTAATACCCGTATTCTCA
131 CGCATCCTACCTCTTTAGCCAGCTCAATACCCGCATGCTCA
* * *
39833 TTTCATGGGTTGACTTAGGCATATGGTGTTCATTCCCAGTCTAAGC
1 TTTCGTAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGC
39879 CCTAGCTGGA
Statistics
Matches: 173, Mismatches: 44, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
171 173 1.00
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (171 bp):
TTTCGTAGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCTCAGACCGAACCGAGGGTT
GGGGTAGCAAGACCCACAGCAGGATCAACAACACACAGAAAGGGACCGGATCAATCCTCGGCTTA
CGCATCCTACCTCTTTAGCCAGCTCAATACCCGCATGCTCA
Found at i:40076 original size:158 final size:158
Alignment explanation
Indices: 39833--40190 Score: 366
Period size: 158 Copynumber: 2.3 Consensus size: 158
39823 CGTATTCTCA
* ** * * *
39833 TTTCATGGGTTGACTTAGGCATATGGTGTTCATTCCCAGTCTAAGCCCTAGCTGGATCGAGGTAC
1 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCCCGACCTGGATCGAGGGAC
* ** * * * * * *
39898 CCACAGTACGATTGGTAGCAT-GC-AAAAGGGGATCGG-GCTGAACCTTGGCTTATGCATTTTGC
66 CCACAGCAAAATTGGCAGCATACCGAAAA--GGATCGGATC-GAACCCTAGCTTATGCATTCTGC
* * *
39960 CTCTCTGGTTGGCTCAGCGCCCGTACACTTG
128 CTCTCCGATCGGCTCAGCGCCCGTACACTTG
* *
39991 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTGCCAGTCTAAGCCCGCCCTGGATCGAGGGAC
1 TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCCCGACCTGGATCGAGGGAC
* * * * *
40056 CTACAGCAAAATCT-GCAGCATACCGATAAGGATCGGATCGATCCCTAGCTTGTGCATTCTGGCT
66 CCACAGCAAAAT-TGGCAGCATACCGAAAAGGATCGGATCGAACCCTAGCTTATGCATTCTGCCT
* * *
40120 CTCCGATCGGCTCAGTGCCTGTACTCTTG
130 CTCCGATCGGCTCAGCGCCCGTACACTTG
* *
40149 TTTCATGGGTTGACTTAGGCATAC-ATAGTGCATTCCAAGTCT
1 TTTCATGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCT
40191 TGACCAACCA
Statistics
Matches: 164, Mismatches: 31, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.01
158 157 0.96
159 3 0.02
160 3 0.02
ACGTcount: A:0.21, C:0.25, G:0.25, T:0.29
Consensus pattern (158 bp):
TTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCCCGACCTGGATCGAGGGAC
CCACAGCAAAATTGGCAGCATACCGAAAAGGATCGGATCGAACCCTAGCTTATGCATTCTGCCTC
TCCGATCGGCTCAGCGCCCGTACACTTG
Found at i:47976 original size:68 final size:68
Alignment explanation
Indices: 47859--47989 Score: 199
Period size: 68 Copynumber: 1.9 Consensus size: 68
47849 ATGGTGGTTG
* * *
47859 AGGCACGTGCCTGCACCAAGGCCCAGCACGTGTCGATGGTGGTCGAGGCAACCACCCGCACCAAC
1 AGGCACGTGCCCGCACCAAGGCCCAGCACGTGCCGATGGTGGTCAAGGCAACCACCCGCACCAAC
47924 TCA
66 TCA
* * * *
47927 AGGCATGTGCCCGCACCAAGGCCCAGCACGTGCCGATGGTGTTCAAGGCAATCGCCCGCACCA
1 AGGCACGTGCCCGCACCAAGGCCCAGCACGTGCCGATGGTGGTCAAGGCAACCACCCGCACCA
47990 GAGGCCATCT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
68 56 1.00
ACGTcount: A:0.23, C:0.37, G:0.28, T:0.12
Consensus pattern (68 bp):
AGGCACGTGCCCGCACCAAGGCCCAGCACGTGCCGATGGTGGTCAAGGCAACCACCCGCACCAAC
TCA
Found at i:48043 original size:90 final size:90
Alignment explanation
Indices: 47939--48127 Score: 245
Period size: 90 Copynumber: 2.1 Consensus size: 90
47929 GCATGTGCCC
* *
47939 GCACCAAGGCCCAGCACGTGCCGATGGTGTTCAAGGCAATCGCCCGCACCAGAGGCCATCTTCTA
1 GCACCAAGGCCCAGCACGTGCCAATGGTGTTCAAGGCAACCGCCCGCACCAGAGGCCATCTTCTA
* * *
48004 TCGATGGTTATCGAGGCAACTGCCTA
66 CCAATGGTGATCGAGGCAACTG-CTA
* * * * * *
48030 -CACCAAGGCCCAGCATGTGCTAATGGTGTTTAATGCAACCGCCCGCACCAGTGGCCATCTTCTG
1 GCACCAAGGCCCAGCACGTGCCAATGGTGTTCAAGGCAACCGCCCGCACCAGAGGCCATCTTCTA
* *
48094 CCAATGGTGGTCGAGGCAAGTGCTA
66 CCAATGGTGATCGAGGCAACTGCTA
48119 GCACCAAGG
1 GCACCAAGG
48128 GTTGGCTTGT
Statistics
Matches: 84, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
89 3 0.04
90 81 0.96
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (90 bp):
GCACCAAGGCCCAGCACGTGCCAATGGTGTTCAAGGCAACCGCCCGCACCAGAGGCCATCTTCTA
CCAATGGTGATCGAGGCAACTGCTA
Found at i:49376 original size:158 final size:158
Alignment explanation
Indices: 49151--49443 Score: 415
Period size: 158 Copynumber: 1.9 Consensus size: 158
49141 GGGTTGGGGC
* * * ** * * *
49151 AGCAGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCTTGGCTTACACATCTTGCTTCTCTG
1 AGCAGGATCGACAGCACACAGAGGGAGATCGAGCCGATCCTCAGCTTACACATCCTACCTCTCTG
* *
49216 GCCGGCTCAGAGCCCGCATGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
66 GCCAGCTCAGAGCCCGCATGCTCATTTCATAGGTTGACTTAGGCATACGAAGTTCATTCCTAGTC
49281 TAAGCCCCAGTCAGATCGAGGGACCCGT
131 TAAGCCCCAGTCAGATCGAGGGACCCGT
* * ** *
49309 AGCAGGATCGACAGCATACAGAGGGAGATCGAGTCGATCCTCAGCTTGTACATCCTACCTCTTTG
1 AGCAGGATCGACAGCACACAGAGGGAGATCGAGCCGATCCTCAGCTTACACATCCTACCTCTCTG
* ** *
49374 GCCAGCTCAGTGCCCTTATGCTCATTTCGTAGGTTGACTTAGGCATACGAAGTTCATTCCTAGTC
66 GCCAGCTCAGAGCCCGCATGCTCATTTCATAGGTTGACTTAGGCATACGAAGTTCATTCCTAGTC
49439 TAAGC
131 TAAGC
49444 ATATGGAGTT
Statistics
Matches: 116, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
158 116 1.00
ACGTcount: A:0.22, C:0.27, G:0.26, T:0.25
Consensus pattern (158 bp):
AGCAGGATCGACAGCACACAGAGGGAGATCGAGCCGATCCTCAGCTTACACATCCTACCTCTCTG
GCCAGCTCAGAGCCCGCATGCTCATTTCATAGGTTGACTTAGGCATACGAAGTTCATTCCTAGTC
TAAGCCCCAGTCAGATCGAGGGACCCGT
Found at i:49731 original size:353 final size:342
Alignment explanation
Indices: 48958--49796 Score: 904
Period size: 343 Copynumber: 2.4 Consensus size: 342
48948 TGTAGCAGCA
* * *
48958 GGACCCGTAGCAAGATTGGCAGCACATAGAGAAGGATC-AGGTCGATCCTCAACTTGCACATCCT
1 GGACCCGTAGCAGGATCGACAGCACATAGAGAAGGATCGA-GTCGATCCTCAACTTGCACATCCT
* * * * *
49022 GCCTCTCTGGCCGGCTCAGTGCCCGCACGCTCGTTTTGTAGGTTGACTTAGGCATAC-ATAATTC
65 GCCTCTCTGGCCAGCTCAGTGCCCTCACGCTCATTTCGTAGGTTGACTTAGGCATACGA-AGTTC
*
49086 ATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTATGCTCAGACCAGATCGAGGGTTGGGGC
129 ATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGCTCAGACCAGATCGAGGGTTGGGGC
* * * * * *
49151 AGCAGGATCGACAGCACGCAGAGGGGGATCGGGCCGATCCTTGGCTTACACATCTTGCTTCTCTG
194 AACAGGATCGACAGCACGCAGAGAGGGATCGGGCCGATCCTCGACTTACACATCCTAC-TCTCTG
* *
49216 GCCGGCTCAGAGCCCGCATGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
258 GCCGACTCAGAGCCCGCACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
49281 TAAGCCCCAGTCAGATCGAG
323 TAAGCCCCAGTCAGATCGAG
* * * * *
49301 GGACCCGTAGCAGGATCGACAGCATACAGAG-GGAGATCGAGTCGATCCTCAGCTTGTACATCCT
1 GGACCCGTAGCAGGATCGACAGCACATAGAGAAG-GATCGAGTCGATCCTCAACTTGCACATCCT
* * * *
49365 ACCTCTTTGGCCAGCTCAGTGCCCTTATGCTCATTTCGTAGGTTGACTTAGGCATACGAAGTTCA
65 GCCTCTCTGGCCAGCTCAGTGCCCTCACGCTCATTTCGTAGGTTGACTTAGGCATACGAAGTTCA
* * * * * * * *
49430 TTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGCTCGGATCGGATTGAGGGTTGAGGCA
130 TTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGCTCAGACCAGATCGAGGGTT---G--
* * * * ** *
49495 GTAGGACCCATAACAGGATCGATAGCATGTAGAGAGGGATTGGGTTGATCCTCGACTTACGCATC
190 G--GG---C--AACAGGATCGACAGCACGCAGAGAGGGATCGGGCCGATCCTCGACTTACACATC
* ** * * * *
49560 CTAC-CATCTGGCTGACTCAGTTCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA-TGTGTT
248 CTACTC-TCTGGCCGACTCAGAGCCCGCACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTT
* *
49623 CATTCCTAGTCTGAA-CCCTA-TCCGGA-CTGAG
312 CATTCCTAGTCT-AAGCCCCAGT-CAGATC-GAG
** * * *
49654 GGACTTGTAGCAGGATCGACAGCACATAGAGAAGGATCGAGTTGATCCTCAACTTACACATTCTG
1 GGACCCGTAGCAGGATCGACAGCACATAGAGAAGGATCGAGTCGATCCTCAACTTGCACATCCTG
* * *
49719 CCTCTCTGGCCAGCTCAGTG-CCTGCACGCTCATTTCATGGGTTGACTTAGGCATATGAAGTTCA
66 CCTCTCTGGCCAGCTCAGTGCCCT-CACGCTCATTTCGTAGGTTGACTTAGGCATACGAAGTTCA
49783 TTCCCAGTCTAAGC
130 TTCCCAGTCTAAGC
49797 CCCAGCCAGA
Statistics
Matches: 407, Mismatches: 68, Indels: 32
0.80 0.13 0.06
Matches are distributed among these distances:
342 1 0.00
343 156 0.38
344 2 0.00
346 1 0.00
348 1 0.00
350 2 0.00
352 5 0.01
353 147 0.36
354 47 0.12
355 45 0.11
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (342 bp):
GGACCCGTAGCAGGATCGACAGCACATAGAGAAGGATCGAGTCGATCCTCAACTTGCACATCCTG
CCTCTCTGGCCAGCTCAGTGCCCTCACGCTCATTTCGTAGGTTGACTTAGGCATACGAAGTTCAT
TCCCAGTCTAAGCATACGAAGTTCATTCCCAATCTAAGCTCAGACCAGATCGAGGGTTGGGGCAA
CAGGATCGACAGCACGCAGAGAGGGATCGGGCCGATCCTCGACTTACACATCCTACTCTCTGGCC
GACTCAGAGCCCGCACGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
GCCCCAGTCAGATCGAG
Found at i:49821 original size:157 final size:156
Alignment explanation
Indices: 49508--49859 Score: 395
Period size: 157 Copynumber: 2.2 Consensus size: 156
49498 GGACCCATAA
* ** * * * *
49508 CAGGATCGATAGCATGTAGAGAGGGATTGGGTTGATCCTCGACTTACGCATCCTACCATCTGGCT
1 CAGGATCGACAGCACATAGAGAGGGATCGGGTTGATCCTCAACTTACACATCCTACCATCTGGCA
* * * *
49573 GACTCAGTTCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGTGTTCATTCCTAGTCTGAA
66 GACTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGAGTTCATTCCCAGTCTGAA
* * * ** * *
49638 CCCTATCCGGACTGAGGGACTTGTAG
131 CCCCAGCCAGACCAAGAGACTCGTAG
* * * * *
49664 CAGGATCGACAGCACATAGAGAAGGATCGAGTTGATCCTCAACTTACACATTCTGCCTCTCTGGC
1 CAGGATCGACAGCACATAGAGAGGGATCGGGTTGATCCTCAACTTACACATCCTACC-ATCTGG-
*
49729 CAG-CTCAGTGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCT
64 CAGACTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATATG-AGTTCATTCCCAGTCT
49793 -AAGCCCCAGCCAGACCAAGAGAC-CGTAG
128 GAA-CCCCAGCCAGACCAAGAGACTCGTAG
* ** *
49821 CAGGATCCACAGCACACCGAGAGGGATCGGGTCGATCCT
1 CAGGATCGACAGCACATAGAGAGGGATCGGGTTGATCCT
49860 TGGCTTATGC
Statistics
Matches: 162, Mismatches: 30, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
156 47 0.29
157 85 0.52
158 30 0.19
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (156 bp):
CAGGATCGACAGCACATAGAGAGGGATCGGGTTGATCCTCAACTTACACATCCTACCATCTGGCA
GACTCAGTGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGAGTTCATTCCCAGTCTGAA
CCCCAGCCAGACCAAGAGACTCGTAG
Found at i:49873 original size:157 final size:157
Alignment explanation
Indices: 49573--49949 Score: 379
Period size: 157 Copynumber: 2.4 Consensus size: 157
49563 CCATCTGGCT
* * * * *
49573 GACTCAGTTCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGTGTTCATTCCTAGTCTGAA
1 GACTCAGTGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATATGAGTTCATTCCCAGTCTGAA
* * * ** * * * * *
49638 CCCTATCCGGACTGAGGGACTTGTAGCAGGATCGACAGCACATAGAGAAGGATCGAGTTGATCCT
66 CCCCAGCCAGACCAAGAGACTCGTAGCAGGATCCACAGCACACAGAGAAGGATCGAGTCGATCCT
*
49703 CAACTTACACATTCTGCCTC-TCTGGCC
131 CAACTTACACATTCTGCCTCTTC-GACC
49730 -AGCTCAGTGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCT-
1 GA-CTCAGTGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATATG-AGTTCATTCCCAGTCTG
* * *
49793 AAGCCCCAGCCAGACCAAGAGAC-CGTAGCAGGATCCACAGCACACCGAGAGGGATCGGGTCGAT
64 AA-CCCCAGCCAGACCAAGAGACTCGTAGCAGGATCCACAGCACACAGAGAAGGATCGAGTCGAT
*** ** **
49857 CCTTGGCTTATGCATTCTGGTTCTTCGACC
128 CCTCAACTTACACATTCTGCCTCTTCGACC
* * **
49887 GACTCAGTG-CT-CACGTGCTTATTTCATGGGTTGACTTAGGCATACGTAGTGAATTCCCAGTCT
1 GACTCAGTGCCTGCAC--GCTCATTTCATGGGTTGACTTAGGCATATG-AGTTCATTCCCAGTCT
49950 TGACCAACCA
Statistics
Matches: 182, Mismatches: 31, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
155 3 0.02
156 3 0.02
157 145 0.80
158 31 0.17
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (157 bp):
GACTCAGTGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATATGAGTTCATTCCCAGTCTGAA
CCCCAGCCAGACCAAGAGACTCGTAGCAGGATCCACAGCACACAGAGAAGGATCGAGTCGATCCT
CAACTTACACATTCTGCCTCTTCGACC
Found at i:54951 original size:370 final size:370
Alignment explanation
Indices: 54251--54993 Score: 981
Period size: 370 Copynumber: 2.0 Consensus size: 370
54241 GCATCATCGG
* * * *
54251 CACGGGTCGAGACTTAAGCTCTGAACCTGCATGGCTCTGGGACCCAAGCATACACTCATTCGACA
1 CACGGATCAAGACTTAAGCTCTGAACCCGCATGGCTCTGAGACCCAAGCATACACTCATTCGACA
* * * *
54316 TCCTAGATCAGTTTTCCTACCACGGTTCACACCCTTGTGAGATATTGTCTGCTCTGGCCCCCTGG
66 TCCTAGATCAATCTTACTACCACGGTTCACACCCTTGTGAGATATTGTCTGCTCTAGCCCCCTGG
* * **
54381 CCTCACGGTTTTATCCTACAAAAGGTACCTCACAAGGTTGAGGTGGTGTGAACCCTTTTATACCC
131 CCTCACGATTTTATCCTACAAAAGGTACCTCACAAAGAAGAGGTGGTGTGAACCCTTTTATACCC
* * **
54446 CGGTGACCTTTTTATTATGTTCGATGTGGGATTCAGGACTCTTTCTTAGGTCAGTGACATTCTCC
196 CAGTGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTTCTTAGGTCAGTGACATTCTCC
** *
54511 CCCACCTAACCTCATGACATTCTCGTCACAGAGGCTGGCCACCCTGCATACCTCCCTCGAGGCAC
261 CCCACCTAACCTCATGACACCCTCATCACAGAGGCTGGCCACCCTGCATACCTCCCTCGAGGCAC
*
54576 TTGGCGTGGATCGAGCGATTTAGAGCTAGCTCTGATACCACTTGT
326 TTGGCGTGGATCGAACGATTTAGAGCTAGCTCTGATACCACTTGT
** * *
54621 CACGGATCAAGACTTAAGCTCTGAACCCGCATGGCTCTGAGA-CCTGGACATCCATTCA-TCGAC
1 CACGGATCAAGACTTAAGCTCTGAACCCGCATGGCTCTGAGACCCAAG-CATACACTCATTCGAC
* * * * * *
54684 AT-CTCAGATCAATCTTATTGCCATGGTTCACACCCTTGTGAGGTATTGTCTGCTCTAGCCTTCT
65 ATCCT-AGATCAATCTTACTACCACGGTTCACACCCTTGTGAGATATTGTCTGCTCTAGCC-CCC
* * *
54748 TGGCCTTACGATTTTATCTTACAAAAGGTGCCTCACAAAGAAGAGGTGGTGTGAACCCTTTTATA
128 TGGCCTCACGATTTTATCCTACAAAAGGTACCTCACAAAGAAGAGGTGGTGTGAACCCTTTTATA
* *
54813 CCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTTAGGACTCTTTCTTAGGTTCA-TGATATT
193 CCCCAGTGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTTCTTAGG-TCAGTGACATT
* * * ** * * *
54877 CTCTCTCACCTAACCTCGTGATGCCCTCATCACAGAGGTTGGCCACCCTGCTTACCTCCTTCGAG
257 CTCCCCCACCTAACCTCATGACACCCTCATCACAGAGGCTGGCCACCCTGCATACCTCCCTCGAG
** * * * *
54942 GTGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACTACTTGT
322 GCACTTGGCGTGGATCGAACGATTTAGAGCTAGCTCTGATACCACTTGT
54991 CAC
1 CAC
54994 AAGCCTATGA
Statistics
Matches: 320, Mismatches: 49, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
368 2 0.01
369 57 0.18
370 258 0.81
371 3 0.01
ACGTcount: A:0.21, C:0.28, G:0.21, T:0.30
Consensus pattern (370 bp):
CACGGATCAAGACTTAAGCTCTGAACCCGCATGGCTCTGAGACCCAAGCATACACTCATTCGACA
TCCTAGATCAATCTTACTACCACGGTTCACACCCTTGTGAGATATTGTCTGCTCTAGCCCCCTGG
CCTCACGATTTTATCCTACAAAAGGTACCTCACAAAGAAGAGGTGGTGTGAACCCTTTTATACCC
CAGTGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTTCTTAGGTCAGTGACATTCTCC
CCCACCTAACCTCATGACACCCTCATCACAGAGGCTGGCCACCCTGCATACCTCCCTCGAGGCAC
TTGGCGTGGATCGAACGATTTAGAGCTAGCTCTGATACCACTTGT
Found at i:55782 original size:45 final size:44
Alignment explanation
Indices: 55731--55833 Score: 125
Period size: 45 Copynumber: 2.3 Consensus size: 44
55721 TAGAAGATGG
* *
55731 CCCTTGGTGTGGGATGTTACCTTGAACACCATCGGTACATGCTGA
1 CCCTTGGTGTGGGA-CTTACCTTGAACACCATCGATACATGCTGA
* * * *
55776 CCCTTGGTATAGGCACTTGCCTTGAACACCATCGATACATGTTGA
1 CCCTTGGTGT-GGGACTTACCTTGAACACCATCGATACATGCTGA
*
55821 GCCTTGGTGTGGG
1 CCCTTGGTGTGGG
55834 CAAATACCTC
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
44 2 0.04
45 43 0.90
46 3 0.06
ACGTcount: A:0.19, C:0.24, G:0.27, T:0.29
Consensus pattern (44 bp):
CCCTTGGTGTGGGACTTACCTTGAACACCATCGATACATGCTGA
Found at i:55851 original size:45 final size:45
Alignment explanation
Indices: 55748--55852 Score: 120
Period size: 45 Copynumber: 2.3 Consensus size: 45
55738 TGTGGGATGT
* **
55748 TACCTTGAACACCATCGGTACATGCTGACCCTTGGTATAGGCACT
1 TACCTTGAACACCATCGATACATGCTGACCCTTGGTATAGGCAAA
* * * * *
55793 TGCCTTGAACACCATCGATACATGTTGAGCCTTGGTGTGGGCAAA
1 TACCTTGAACACCATCGATACATGCTGACCCTTGGTATAGGCAAA
* *
55838 TACCTCGACCACCAT
1 TACCTTGAACACCAT
55853 TAGCACTTAC
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (45 bp):
TACCTTGAACACCATCGATACATGCTGACCCTTGGTATAGGCAAA
Found at i:65469 original size:9 final size:9
Alignment explanation
Indices: 65455--65480 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
65445 TAAAAATTGG
65455 AGATTACAA
1 AGATTACAA
65464 AGATTACAA
1 AGATTACAA
65473 AGATTACA
1 AGATTACA
65481 TGAGGCTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.54, C:0.12, G:0.12, T:0.23
Consensus pattern (9 bp):
AGATTACAA
Found at i:68725 original size:18 final size:19
Alignment explanation
Indices: 68686--68732 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
68676 ATTTTACCAG
*
68686 TAATAA-TATAAAATAACAA
1 TAATAATTA-AAAAAAACAA
68705 TAATAATTAAAAAAAAC-A
1 TAATAATTAAAAAAAACAA
*
68723 TAAAAATTAA
1 TAATAATTAA
68733 CATAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 10 0.40
19 13 0.52
20 2 0.08
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (19 bp):
TAATAATTAAAAAAAACAA
Found at i:68734 original size:12 final size:12
Alignment explanation
Indices: 68719--68757 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
68709 AATTAAAAAA
*
68719 AACATAAAAATT
1 AACATAAAAATC
68731 AACATAAAAAATC
1 AACAT-AAAAATC
68744 AACATAAAAATC
1 AACATAAAAATC
68756 AA
1 AA
68758 AATGGAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 14 0.56
13 11 0.44
ACGTcount: A:0.69, C:0.13, G:0.00, T:0.18
Consensus pattern (12 bp):
AACATAAAAATC
Found at i:68767 original size:25 final size:25
Alignment explanation
Indices: 68712--68760 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
68702 CAATAATAAT
* *
68712 TAAAAAA--AACATAAAAATTAACA
1 TAAAAAATCAACATAAAAATCAAAA
68735 TAAAAAATCAACATAAAAATCAAAA
1 TAAAAAATCAACATAAAAATCAAAA
68760 T
1 T
68761 GGAAAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 7 0.32
25 15 0.68
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.18
Consensus pattern (25 bp):
TAAAAAATCAACATAAAAATCAAAA
Found at i:69593 original size:29 final size:29
Alignment explanation
Indices: 69552--69612 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 29
69542 TGTTTTAAAG
*
69552 ATTAATAATAATAAT-AATAAAGAACAAA
1 ATTAATAATAATAATAAAAAAAGAACAAA
69580 ATTATATAATAATAATAAAAAAAGAACAAA
1 ATTA-ATAATAATAATAAAAAAAGAACAAA
69610 ATT
1 ATT
69613 GGTGCCTACA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 4 0.13
29 11 0.37
30 15 0.50
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.26
Consensus pattern (29 bp):
ATTAATAATAATAATAAAAAAAGAACAAA
Found at i:69899 original size:39 final size:39
Alignment explanation
Indices: 69753--70098 Score: 335
Period size: 39 Copynumber: 8.9 Consensus size: 39
69743 AGAAAATTTG
* *
69753 AAAGGCTCTTCTAAACAGAGGCTATA-AAACTTTAAATTCA
1 AAAGGCTCCTCTAACCAGAGGC-A-ACAAACTTTAAATTCA
* * *
69793 AAAAGCTCTTCTCACCAGAGGCAACAAACTTTAAATT-A
1 AAAGGCTCCTCTAACCAGAGGCAACAAACTTTAAATTCA
** * * * *
69831 AAAATCT-CTATTACCAAAGGCAACGAACTTTAAATTCA
1 AAAGGCTCCTCTAACCAGAGGCAACAAACTTTAAATTCA
* *
69869 AAAGGCTCCTCTCATCAGAGGCAACAAACTTTAAATTCA
1 AAAGGCTCCTCTAACCAGAGGCAACAAACTTTAAATTCA
* * * *
69908 AAAGGCTCCTCTCACCAGAGGCAGCGAACTTT-AATCCA
1 AAAGGCTCCTCTAACCAGAGGCAACAAACTTTAAATTCA
* * * * *
69946 AAA-GCTCATTTAACCAAAGGCAGCGAACTTTAAATTCA
1 AAAGGCTCCTCTAACCAGAGGCAACAAACTTTAAATTCA
* * * * * *
69984 AAAAGCTCCTTTAACCAAAGGCAGCAAACTTCAAATGTTA
1 AAAGGCTCCTCTAACCAGAGGCAACAAACTTTAAAT-TCA
* *
70024 AAAGGCTCCTCTCATCAGAGGCAACAAACTTTAAATTCA
1 AAAGGCTCCTCTAACCAGAGGCAACAAACTTTAAATTCA
* *
70063 AAA-GCTCCTTTAACCAAAGGCAACAAACTTTAAATT
1 AAAGGCTCCTCTAACCAGAGGCAACAAACTTTAAATT
70099 AAAGATCTGA
Statistics
Matches: 259, Mismatches: 41, Indels: 14
0.82 0.13 0.04
Matches are distributed among these distances:
37 48 0.19
38 59 0.23
39 102 0.39
40 50 0.19
ACGTcount: A:0.41, C:0.23, G:0.12, T:0.24
Consensus pattern (39 bp):
AAAGGCTCCTCTAACCAGAGGCAACAAACTTTAAATTCA
Found at i:69962 original size:115 final size:115
Alignment explanation
Indices: 69753--70098 Score: 437
Period size: 115 Copynumber: 3.0 Consensus size: 115
69743 AGAAAATTTG
* * *
69753 AAAGGCTCTTCTAAACAGAGGCTATA-AAACTTTAAATTCAAAAAGCTCTTCTCACCAGAGGCAA
1 AAAGGCTCCTCTAAACAGAGGC-A-ACAAACTTTAAATTCAAAAGGCTCCTCTCACCAGAGGCAA
* *
69817 CAAACTTTAAATTAAAAATCTCTATT-ACCAAAGGCAACGAACTTTAAATTCA
64 CAAACTTTAAATTCAAAAGCTCT-TTAACCAAAGGCAACGAACTTTAAATTCA
* * * *
69869 AAAGGCTCCTCTCATCAGAGGCAACAAACTTTAAATTCAAAAGGCTCCTCTCACCAGAGGCAGCG
1 AAAGGCTCCTCTAAACAGAGGCAACAAACTTTAAATTCAAAAGGCTCCTCTCACCAGAGGCAACA
* *
69934 AACTTT-AATCCAAAAGCTCATTTAACCAAAGGCAGCGAACTTTAAATTCA
66 AACTTTAAATTCAAAAGCTC-TTTAACCAAAGGCAACGAACTTTAAATTCA
* * * * * * * *
69984 AAAAGCTCCTTTAACCAAAGGCAGCAAACTTCAAATGTTAAAAGGCTCCTCTCATCAGAGGCAAC
1 AAAGGCTCCTCTAAACAGAGGCAACAAACTTTAAAT-TCAAAAGGCTCCTCTCACCAGAGGCAAC
*
70049 AAACTTTAAATTCAAAAGCTCCTTTAACCAAAGGCAACAAACTTTAAATT
65 AAACTTTAAATTCAAAAGCT-CTTTAACCAAAGGCAACGAACTTTAAATT
70099 AAAGATCTGA
Statistics
Matches: 199, Mismatches: 25, Indels: 11
0.85 0.11 0.05
Matches are distributed among these distances:
114 13 0.07
115 98 0.49
116 50 0.25
117 37 0.19
118 1 0.01
ACGTcount: A:0.41, C:0.23, G:0.12, T:0.24
Consensus pattern (115 bp):
AAAGGCTCCTCTAAACAGAGGCAACAAACTTTAAATTCAAAAGGCTCCTCTCACCAGAGGCAACA
AACTTTAAATTCAAAAGCTCTTTAACCAAAGGCAACGAACTTTAAATTCA
Found at i:69967 original size:76 final size:77
Alignment explanation
Indices: 69779--70095 Score: 356
Period size: 76 Copynumber: 4.1 Consensus size: 77
69769 AGAGGCTATA
* * *
69779 AAACTTTAAATTCAAAAAGCTCTTCTCACCAGAGGCAACAAACTTTAAATT-AAAAATCT-CTAT
1 AAACTTT-AATTCAAAAGGCTCCTCTCACCAGAGGCAACAAACTTTAAATTCAAAAAGCTCCT-T
69842 T-ACCAAAGGCAAC
64 TAACCAAAGGCAAC
* * * *
69855 GAACTTTAAATTCAAAAGGCTCCTCTCATCAGAGGCAACAAACTTTAAATTCAAAAGGCTCCTCT
1 AAACTTT-AATTCAAAAGGCTCCTCTCACCAGAGGCAACAAACTTTAAATTCAAAAAGCTCCTTT
* * *
69920 CACCAGAGGCAGC
65 AACCAAAGGCAAC
* * * * * * * *
69933 GAACTTTAATCCAAAA-GCTCATTTAACCAAAGGCAGCGAACTTTAAATTCAAAAAGCTCCTTTA
1 AAACTTTAATTCAAAAGGCTCCTCTCACCAGAGGCAACAAACTTTAAATTCAAAAAGCTCCTTTA
*
69997 ACCAAAGGCAGC
66 ACCAAAGGCAAC
* * *
70009 AAACTTCAAATGTTAAAAGGCTCCTCTCATCAGAGGCAACAAACTTTAAATTC-AAAAGCTCCTT
1 AAACTT-TAAT-TCAAAAGGCTCCTCTCACCAGAGGCAACAAACTTTAAATTCAAAAAGCTCCTT
70073 TAACCAAAGGCAAC
64 TAACCAAAGGCAAC
70087 AAACTTTAA
1 AAACTTTAA
70096 ATTAAAGATC
Statistics
Matches: 201, Mismatches: 34, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
76 101 0.50
77 20 0.10
78 53 0.26
79 27 0.13
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.23
Consensus pattern (77 bp):
AAACTTTAATTCAAAAGGCTCCTCTCACCAGAGGCAACAAACTTTAAATTCAAAAAGCTCCTTTA
ACCAAAGGCAAC
Found at i:76301 original size:158 final size:157
Alignment explanation
Indices: 75993--76378 Score: 409
Period size: 158 Copynumber: 2.4 Consensus size: 157
75983 TGGTTGGTCA
* * * * * *
75993 AGACTGGGAATGCACTACATATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTACTGAGCCA-
1 AGACTGGGAATGAACTCCATATACCTAAGTCAACCCATGAAACGAGCATGC-GGCACTGAG-CAG
* ** * * * * * * *
76057 GCCAAAGAGCTAGAATTCGTAAGCTAGGGATTGACCCGGTCCCCCTCGGTGGGCTACAAATCCTG
64 GCCAAAGAGCTAAAATGAGCAAGCCAAGGATCGACCCAGTCCCCCTCGGCGGGCTACAAATCCTA
* *
76122 CTGCAGGTCTCTCGATCCGACTGGGGCTT
129 CTGCAGGTCCCTCGATCCGACTAGGGCTT
* *
76151 AGACTGGGAATGAACTCCATATCCCTAAGTCAACCCATGAAACGAGCATGCGGACACTGAGCTGG
1 AGACTGGGAATGAACTCCATATACCTAAGTCAACCCATGAAACGAGCATGCGG-CACTGAGCAGG
* * * * **
76216 CCAGAGAGGC-AAAATGAGCAAGCCAAGGATCGACCCAGTCCCCCTCTGCGTGCTGCCGATCCTA
65 CCAAAGA-GCTAAAATGAGCAAGCCAAGGATCGACCCAGTCCCCCTCGGCGGGCTACAAATCCTA
* * *
76280 CTGCGGGTCCCTCGGTTCGACTAGGGCTT
129 CTGCAGGTCCCTCGATCCGACTAGGGCTT
* * *
76309 AGATTGGGAATGAACTCCATATACCTAAGTCAACACACGAAACGAGCGTATG-GGCACTGAGCAG
1 AGACTGGGAATGAACTCCATATACCTAAGTCAACCCATGAAACGAGC--ATGCGGCACTGAGCAG
76373 GCCAAA
64 GCCAAA
76379 AAGGTAGACG
Statistics
Matches: 189, Mismatches: 34, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
157 3 0.02
158 179 0.95
159 4 0.02
160 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.26, T:0.18
Consensus pattern (157 bp):
AGACTGGGAATGAACTCCATATACCTAAGTCAACCCATGAAACGAGCATGCGGCACTGAGCAGGC
CAAAGAGCTAAAATGAGCAAGCCAAGGATCGACCCAGTCCCCCTCGGCGGGCTACAAATCCTACT
GCAGGTCCCTCGATCCGACTAGGGCTT
Found at i:77168 original size:149 final size:152
Alignment explanation
Indices: 76907--77178 Score: 406
Period size: 149 Copynumber: 1.8 Consensus size: 152
76897 GCCCACGCAC
* * * *
76907 CACGTGCGAGTGTCCTGAGCCTGGGCCGAGCACCAATACGTGCCACGATAGAGTGGTAGGTGGGT
1 CACGTGCGAGTGTCCTGAGCCCGAGCCGAGCACCAATACATGCCACAATAGAGTGGTAGGTGGGT
* * * *
76972 TTAGGCACATCTTCATATTTTTGCCATGCCAATACCATTTTTATGGCTTGTGAATTCACATGAGC
66 TTAGGCACATCTTCATATATCTGCCATGCCAATACAATTTTTATGGCTTGTAAATTCACATGAGC
77037 ACTCTCTAGTGCCCGCACACCA
131 ACTCTCTAGTGCCCGCACACCA
* * *
77059 CACGTG-G-GTGTCCTGAGCCCGAGCCGAGCACC-ATGCATGCCACAATCGGGTGGTAGGTGGGT
1 CACGTGCGAGTGTCCTGAGCCCGAGCCGAGCACCAATACATGCCACAATAGAGTGGTAGGTGGGT
**
77121 TTAGGCACATCTTCATATATCTGCCATGCCAATGTAATTTTTATGGCTTGTAAATTCA
66 TTAGGCACATCTTCATATATCTGCCATGCCAATACAATTTTTATGGCTTGTAAATTCA
77179 TACAATGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
149 77 0.72
150 23 0.21
151 1 0.01
152 6 0.06
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.28
Consensus pattern (152 bp):
CACGTGCGAGTGTCCTGAGCCCGAGCCGAGCACCAATACATGCCACAATAGAGTGGTAGGTGGGT
TTAGGCACATCTTCATATATCTGCCATGCCAATACAATTTTTATGGCTTGTAAATTCACATGAGC
ACTCTCTAGTGCCCGCACACCA
Found at i:78090 original size:45 final size:45
Alignment explanation
Indices: 78049--78590 Score: 193
Period size: 45 Copynumber: 12.0 Consensus size: 45
78039 CCTGGTGCAT
*
78049 GCGATTGCCTCGAACACCATTGGTACATGCTGGGCCTTGGTGCGG
1 GCGATTGCCTCGAACACCATTGGCACATGCTGGGCCTTGGTGCGG
* * * * * *
78094 GCGATTGCCTCGAGCACCATCGGCATAAG-TCGGCCCTTGGTGTGG
1 GCGATTGCCTCGAACACCATTGGCACATGCT-GGGCCTTGGTGCGG
* * * * * *
78139 GC-ATTTGCCTC-AACCACCATCGGCAGAAGATGGCCCCTGGTGCGG
1 GCGA-TTGCCTCGAA-CACCATTGGCACATGCTGGGCCTTGGTGCGG
** * *
78184 GCGATTGCCTAAAACACCATTGGGACATGCTAGGCCTTGGTGCGG
1 GCGATTGCCTCGAACACCATTGGCACATGCTGGGCCTTGGTGCGG
* * * * ** **
78229 GCGGTTGCCTCGAATAGCATTGGTATGTGCTGGGCCTTGGTGCAA
1 GCGATTGCCTCGAACACCATTGGCACATGCTGGGCCTTGGTGCGG
* * * *** * *
78274 GC-AGTTACCTCGACCATCATCAACACGTGCTGGGCCTTGGTGCTG
1 GCGA-TTGCCTCGAACACCATTGGCACATGCTGGGCCTTGGTGCGG
* * * * * * * * * * *
78319 AC-ACATGCCCCGACCACTATCGACACAAG-TCGGCCCTTGGTACGA
1 GCGA-TTGCCTCGAACACCATTGGCACATGCT-GGGCCTTGGTGCGG
* * * * * * * * * * *
78364 GC-ACTTGCCTTGACCACCATCGGTAAAAGATAGCCCCTGGTGTGG
1 GCGA-TTGCCTCGAACACCATTGGCACATGCTGGGCCTTGGTGCGG
* * * * * * *
78409 GCAATTACGTTGAACACAATCGACACATGCTGGGCCTTGGTGCGG
1 GCGATTGCCTCGAACACCATTGGCACATGCTGGGCCTTGGTGCGG
* * * ** * * * * * * *
78454 GCGGTTGCCTC-AATCACTATCGATAGAAGATGGCCCCTGGTACAG
1 GCGATTGCCTCGAA-CACCATTGGCACATGCTGGGCCTTGGTGCGG
* * *
78499 GCGGTTGCCTTGAACACCATTGGCACATGCTGGGCCTTGGTGTGG
1 GCGATTGCCTCGAACACCATTGGCACATGCTGGGCCTTGGTGCGG
* * * * * *
78544 GC-AGTTACCTTGAACACCATCGGCACGTGCTAGGCCTTGGTGTGG
1 GCGA-TTGCCTCGAACACCATTGGCACATGCTGGGCCTTGGTGCGG
78589 GC
1 GC
78591 ACATGCCTCG
Statistics
Matches: 369, Mismatches: 115, Indels: 26
0.72 0.23 0.05
Matches are distributed among these distances:
44 6 0.02
45 355 0.96
46 8 0.02
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (45 bp):
GCGATTGCCTCGAACACCATTGGCACATGCTGGGCCTTGGTGCGG
Found at i:78462 original size:90 final size:90
Alignment explanation
Indices: 78353--78566 Score: 214
Period size: 90 Copynumber: 2.4 Consensus size: 90
78343 ACAAGTCGGC
* * * * *** *
78353 CCTTGGTACGAGCACTTGCCTTGACCACCATCGGTAAAAGATAGCCCCTGGTGTGGGCAATTACG
1 CCTTGGTGCGGGCAGTTGCCTTGAACACCATCGGTAAAAGATAGCCCCTGGTACAGGCAATTACC
78418 TTGAACACAATCGACACATGCTGGG
66 TTGAACACAATCGACACATGCTGGG
* * * * * * ** *
78443 CCTTGGTGCGGGCGGTTGCC-TCAATCACTATCGATAGAAGATGGCCCCTGGTACAGGCGGTTGC
1 CCTTGGTGCGGGCAGTTGCCTTGAA-CACCATCGGTAAAAGATAGCCCCTGGTACAGGCAATTAC
* * *
78507 CTTGAACACCATTGGCACATGCTGGG
65 CTTGAACACAATCGACACATGCTGGG
* *
78533 CCTTGGTGTGGGCAGTTACCTTGAACACCATCGG
1 CCTTGGTGCGGGCAGTTGCCTTGAACACCATCGG
78567 CACGTGCTAG
Statistics
Matches: 96, Mismatches: 26, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
89 2 0.02
90 91 0.95
91 3 0.03
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (90 bp):
CCTTGGTGCGGGCAGTTGCCTTGAACACCATCGGTAAAAGATAGCCCCTGGTACAGGCAATTACC
TTGAACACAATCGACACATGCTGGG
Found at i:78598 original size:135 final size:134
Alignment explanation
Indices: 78228--78599 Score: 334
Period size: 135 Copynumber: 2.8 Consensus size: 134
78218 CCTTGGTGCG
* * * ** *** * * *
78228 GGCGGTTGCCTCGAATAGCATTGGTATGTGCTGGGCCTTGGTGCAAGCAGTTACCTCGACCATCA
1 GGCGGTTGCCTTGAACACCATTGGTAAATGCTGGGCCTTGGTGTGGGCAGTTACCTTGAACACCA
* * * * *
78293 TCAACACGTGCTGGGCCTTGGTGCT-GACACATGCCCCGACCACTATCGACACAAGTCGGCCCTT
66 TCGACACGTGCTGGGCCTTGGTG-TGGGCACATGCCTCAACCACTATCGACACAAGTCGGCCCCT
78357 GGTAC
130 GGTAC
** * * * * * * * * * *
78362 GAGCACTTGCCTTGACCACCATCGGTAAAAGATAGCCCCTGGTGTGGGCAATTACGTTGAACACA
1 G-GCGGTTGCCTTGAACACCATTGGTAAATGCTGGGCCTTGGTGTGGGCAGTTACCTTGAACACC
* * *** * * *
78427 ATCGACACATGCTGGGCCTTGGTGCGGGCGGTTGCCTCAATCACTATCGATAGAAGAT-GGCCCC
65 ATCGACACGTGCTGGGCCTTGGTGTGGGCACATGCCTCAACCACTATCGACACAAG-TCGGCCCC
78491 TGGTAC
129 TGGTAC
* *
78497 AGGCGGTTGCCTTGAACACCATTGGCACATGCTGGGCCTTGGTGTGGGCAGTTACCTTGAACACC
1 -GGCGGTTGCCTTGAACACCATTGGTAAATGCTGGGCCTTGGTGTGGGCAGTTACCTTGAACACC
* *
78562 ATCGGCACGTGCTAGGCCTTGGTGTGGGCACATGCCTC
65 ATCGACACGTGCTGGGCCTTGGTGTGGGCACATGCCTC
78600 GAGCTGGTGT
Statistics
Matches: 177, Mismatches: 57, Indels: 7
0.73 0.24 0.03
Matches are distributed among these distances:
134 1 0.01
135 174 0.98
136 2 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (134 bp):
GGCGGTTGCCTTGAACACCATTGGTAAATGCTGGGCCTTGGTGTGGGCAGTTACCTTGAACACCA
TCGACACGTGCTGGGCCTTGGTGTGGGCACATGCCTCAACCACTATCGACACAAGTCGGCCCCTG
GTAC
Found at i:78635 original size:67 final size:68
Alignment explanation
Indices: 78536--78668 Score: 214
Period size: 67 Copynumber: 2.0 Consensus size: 68
78526 TGCTGGGCCT
* *
78536 TGGTGTGGGCAGTTACCTTGAACACCATCGGCACGTGCTAGGCCTTGGTGTGGGCACATGCCTCG
1 TGGTGTGGGCAGTTACCTTGAACACCATCGGCACGAGCTAGGCCTTGGTGCGGGCACATGCCTCG
78601 AGC
66 AGC
* * *
78604 TGGTGT-GGCGGTTGCCTTGACCACCATCGGCACGAGCTAGGCCTTGGTGCGGGCACATGCCTCG
1 TGGTGTGGGCAGTTACCTTGAACACCATCGGCACGAGCTAGGCCTTGGTGCGGGCACATGCCTCG
78668 A
66 A
78669 CCACCATCGG
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
67 54 0.90
68 6 0.10
ACGTcount: A:0.15, C:0.28, G:0.35, T:0.23
Consensus pattern (68 bp):
TGGTGTGGGCAGTTACCTTGAACACCATCGGCACGAGCTAGGCCTTGGTGCGGGCACATGCCTCG
AGC
Found at i:79203 original size:22 final size:22
Alignment explanation
Indices: 79178--79220 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
79168 GCCTCACAGG
79178 CTGGCCTGCAAGCTGGGTGGGA
1 CTGGCCTGCAAGCTGGGTGGGA
79200 CTGGCCTGCAAGCTGGGTGGG
1 CTGGCCTGCAAGCTGGGTGGG
79221 TGTTCTGACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.12, C:0.23, G:0.47, T:0.19
Consensus pattern (22 bp):
CTGGCCTGCAAGCTGGGTGGGA
Found at i:92571 original size:26 final size:26
Alignment explanation
Indices: 92526--92579 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
92516 TCCGGTCTGA
92526 GCTTAGACTAAGAATAAACTCCATAT
1 GCTTAGACTAAGAATAAACTCCATAT
* *
92552 GCTTAGACT-AGAAATGAACTCTATAT
1 GCTTAGACTAAG-AATAAACTCCATAT
92578 GC
1 GC
92580 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.28
Consensus pattern (26 bp):
GCTTAGACTAAGAATAAACTCCATAT
Found at i:105977 original size:45 final size:45
Alignment explanation
Indices: 105928--106014 Score: 120
Period size: 45 Copynumber: 1.9 Consensus size: 45
105918 CGAGCGGTTA
* *
105928 CCTCGACCACCATCAACACATGCTGGGCCTTGGTGCGGGCACAAG
1 CCTCGACCACCATCAACACAAGCTGGCCCTTGGTGCGGGCACAAG
* * **
105973 CCTCGACCTCTATCGGCACAAGCTGGCCCTTGGTGCGGGCAC
1 CCTCGACCACCATCAACACAAGCTGGCCCTTGGTGCGGGCAC
106015 TTACCTTGTT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.18, C:0.37, G:0.28, T:0.17
Consensus pattern (45 bp):
CCTCGACCACCATCAACACAAGCTGGCCCTTGGTGCGGGCACAAG
Found at i:129014 original size:24 final size:24
Alignment explanation
Indices: 128964--129015 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
128954 GTGGATGCAT
* *
128964 ACCTAGGTATGACCATGCACCCCC
1 ACCTAGGCATGACCATGCACCCAC
* *
128988 ACCTAGGCCTGACCATGCACTCAC
1 ACCTAGGCATGACCATGCACCCAC
129012 ACCT
1 ACCT
129016 CGGTCATCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.42, G:0.15, T:0.17
Consensus pattern (24 bp):
ACCTAGGCATGACCATGCACCCAC
Found at i:131986 original size:45 final size:45
Alignment explanation
Indices: 131882--131993 Score: 138
Period size: 45 Copynumber: 2.5 Consensus size: 45
131872 AACCATCACC
* * *
131882 AGCACAAGTTGGCCATT-GCTACGGGCACTTGCCTTGATCACCATT
1 AGCACAAGCTGGCCCTTAG-TATGGGCACTTGCCTTGATCACCATT
* *
131927 AGCATAAGCTGGCCCTTGGTATGGGCACTTGCCTTGATCACCATT
1 AGCACAAGCTGGCCCTTAGTATGGGCACTTGCCTTGATCACCATT
*
131972 -GACACATGCTGGCCCTTAGTAT
1 AG-CACAAGCTGGCCCTTAGTAT
131994 AGGTACATGC
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
44 1 0.02
45 56 0.97
46 1 0.02
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (45 bp):
AGCACAAGCTGGCCCTTAGTATGGGCACTTGCCTTGATCACCATT
Found at i:140119 original size:26 final size:26
Alignment explanation
Indices: 140083--140136 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
140073 TCCGATCTGA
140083 GCTTAGACTGGGAATGAACTACATAT
1 GCTTAGACTGGGAATGAACTACATAT
*
140109 GCTTAGACTGGGAATGAACTCCATAT
1 GCTTAGACTGGGAATGAACTACATAT
140135 GC
1 GC
140137 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAACTACATAT
Found at i:140397 original size:158 final size:158
Alignment explanation
Indices: 140109--140401 Score: 399
Period size: 158 Copynumber: 1.9 Consensus size: 158
140099 AACTACATAT
* * *
140109 GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCTACGAAATGAGCATAAGGGCACTGAG
1 GCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCATAAGAGCACTGAG
* * * ** * *
140174 CCGGCCAAAGAGGTAGGATGTACAAGCTGAGGATCGACCCGATCTCCCTTTGCATGCTGTCGATC
66 CCGGCCAAAGAAGCAAGATGTACAAGCCAAGGATCGACCCGATCCCCCTCTGCATGCTGTCGATC
140239 CTGCTACGGGTCCCTCGATCTGACTGGG
131 CTGCTACGGGTCCCTCGATCTGACTGGG
* * * ** *
140267 GCTTAGACTAGGAATGAACTCCATGTGCCTAAGTGAACCCATGAAATGAGCATGCGAGCTCTGAG
1 GCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCATAAGAGCACTGAG
* **
140332 CCGGCCAGAGAAGCAAGATGTGTAAGCCAAGGATC-AGCCCGATCCCCCTCTGCATGCTGTCGAT
66 CCGGCCAAAGAAGCAAGATGTACAAGCCAAGGATCGA-CCCGATCCCCCTCTGCATGCTGTCGAT
140396 CCTGCT
130 CCTGCT
140402 GCCCCAACCC
Statistics
Matches: 115, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
157 1 0.01
158 114 0.99
ACGTcount: A:0.26, C:0.27, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCATAAGAGCACTGAG
CCGGCCAAAGAAGCAAGATGTACAAGCCAAGGATCGACCCGATCCCCCTCTGCATGCTGTCGATC
CTGCTACGGGTCCCTCGATCTGACTGGG
Found at i:141206 original size:45 final size:45
Alignment explanation
Indices: 141157--141436 Score: 213
Period size: 45 Copynumber: 6.2 Consensus size: 45
141147 AGATGGTCCC
* *
141157 TGGTG-GGTGCGGTTGCCTCGAACACCATCGACACATGCTGGGCCT
1 TGGTGTGG-GCGGTTACCTCGAACACCATCGGCACATGCTGGGCCT
* * * * *
141202 TGGTGTGGGCGGTTACCTCTAGCACCACCGGCACATGTTAGGCCT
1 TGGTGTGGGCGGTTACCTCGAACACCATCGGCACATGCTGGGCCT
** * * * * * *
141247 TGGTGTGGGCACTTACCTCGACCACCATCGGTAGATGATGGCCCC
1 TGGTGTGGGCGGTTACCTCGAACACCATCGGCACATGCTGGGCCT
** ** * * * * * * * *
141292 TAATGCAGGAGGTTGCCTCGATCACCATTGGTAGAAGAT-GGCCTT
1 TGGTGTGGGCGGTTACCTCGAACACCATCGGCACATGCTGGGCC-T
* * * * *
141337 TGGTGCGAGCGGTTACCTCGAACACCATCGACATATGCTGGGCCA
1 TGGTGTGGGCGGTTACCTCGAACACCATCGGCACATGCTGGGCCT
* * *
141382 TGGTGTGGACGGTTACCTCGAAGACCATCGGCACGTGCTGGGCCT
1 TGGTGTGGGCGGTTACCTCGAACACCATCGGCACATGCTGGGCCT
141427 TGGTGTGGGC
1 TGGTGTGGGC
141437 ACATGCCTCG
Statistics
Matches: 178, Mismatches: 54, Indels: 6
0.75 0.23 0.03
Matches are distributed among these distances:
44 3 0.02
45 169 0.95
46 6 0.03
ACGTcount: A:0.18, C:0.27, G:0.32, T:0.23
Consensus pattern (45 bp):
TGGTGTGGGCGGTTACCTCGAACACCATCGGCACATGCTGGGCCT
Found at i:141446 original size:45 final size:45
Alignment explanation
Indices: 141350--141447 Score: 106
Period size: 45 Copynumber: 2.2 Consensus size: 45
141340 TGCGAGCGGT
* ***
141350 TACCTCGAACACCATCGACATATGCTGGGCCATGGTGTGGACGGT
1 TACCTCGAACACCATCGACACATGCTGGGCCATGGTGTGGACACA
* * * * *
141395 TACCTCGAAGACCATCGGCACGTGCTGGGCCTTGGTGTGGGCACA
1 TACCTCGAACACCATCGACACATGCTGGGCCATGGTGTGGACACA
*
141440 TGCCTCGA
1 TACCTCGA
141448 GTTGGTACAG
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.21
Consensus pattern (45 bp):
TACCTCGAACACCATCGACACATGCTGGGCCATGGTGTGGACACA
Found at i:141631 original size:90 final size:90
Alignment explanation
Indices: 141537--141740 Score: 239
Period size: 90 Copynumber: 2.3 Consensus size: 90
141527 ACAAGCCAGC
* * * * * *
141537 CCTTGGTGCGAGCACTTGCCTCGACCACCATTGGCAGAAGATGGCCACTGGTGCGGGTGGTTGCA
1 CCTTGGTGCGAGCACTTGCCTCGACAACCATCGACAGAAGATGGCCACTGGTACGGGCGATTGCA
*
141602 TTGAACACCATCAGCACATGCTGGG
66 TCGAACACCATCAGCACATGCTGGG
* * * * *
141627 CCTTGGTG-TAGGCAGTTGCCTCGATAACCATCGATAGAAGATGGCCCCTGGTACGGGCGATTGC
1 CCTTGGTGCGA-GCACTTGCCTCGACAACCATCGACAGAAGATGGCCACTGGTACGGGCGATTGC
* * *
141691 CTCGAACACCATCGGCACGTGCTGGG
65 ATCGAACACCATCAGCACATGCTGGG
* *
141717 CCTTGGTGCGGGCACATGCCTCGA
1 CCTTGGTGCGAGCACTTGCCTCGA
141741 GTTGGTGAGA
Statistics
Matches: 93, Mismatches: 19, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
89 1 0.01
90 92 0.99
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.21
Consensus pattern (90 bp):
CCTTGGTGCGAGCACTTGCCTCGACAACCATCGACAGAAGATGGCCACTGGTACGGGCGATTGCA
TCGAACACCATCAGCACATGCTGGG
Found at i:141729 original size:45 final size:45
Alignment explanation
Indices: 141585--141729 Score: 107
Period size: 45 Copynumber: 3.2 Consensus size: 45
141575 AGATGGCCAC
* * * * * *
141585 TGGTGCGGGTGGTTGCATTGAACACCATCAGCACATGCTGGGCCT
1 TGGTGCGGGCGATTGCCTCGAACACCATCGGCACGTGCTGGGCCT
** ** * * * *
141630 TGGTGTAGGC-AGTTGCCTCGATA-ACCATCGATA-GAAGATGGCCCC
1 TGGTGCGGGCGA-TTGCCTCGA-ACACCATCGGCACG-TGCTGGGCCT
*
141675 TGGTACGGGCGATTGCCTCGAACACCATCGGCACGTGCTGGGCCT
1 TGGTGCGGGCGATTGCCTCGAACACCATCGGCACGTGCTGGGCCT
141720 TGGTGCGGGC
1 TGGTGCGGGC
141730 ACATGCCTCG
Statistics
Matches: 70, Mismatches: 24, Indels: 12
0.66 0.23 0.11
Matches are distributed among these distances:
44 1 0.01
45 66 0.94
46 3 0.04
ACGTcount: A:0.18, C:0.26, G:0.34, T:0.22
Consensus pattern (45 bp):
TGGTGCGGGCGATTGCCTCGAACACCATCGGCACGTGCTGGGCCT
Found at i:141806 original size:45 final size:45
Alignment explanation
Indices: 141756--141853 Score: 108
Period size: 45 Copynumber: 2.2 Consensus size: 45
141746 TGAGAGTGGT
** * *
141756 TGCCTCGACCACCATC-AGCACGTGCTGGGCCTTGGTGCAGGCACG
1 TGCCTCGACCACCATCGA-CACAAGCTAGCCCTTGGTGCAGGCACG
* * * *
141801 TGCCTCAACCGCCATCGACACAAGCTAGCCCTTGGTGCGGGCACT
1 TGCCTCGACCACCATCGACACAAGCTAGCCCTTGGTGCAGGCACG
141846 TGCCTCGA
1 TGCCTCGA
141854 TCACTGTCAG
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
45 42 0.98
46 1 0.02
ACGTcount: A:0.17, C:0.37, G:0.28, T:0.18
Consensus pattern (45 bp):
TGCCTCGACCACCATCGACACAAGCTAGCCCTTGGTGCAGGCACG
Found at i:142384 original size:22 final size:22
Alignment explanation
Indices: 142356--142410 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
142346 CAAAATACAG
142356 GGTGTGCATGCCTTTTGACCAT
1 GGTGTGCATGCCTTTTGACCAT
142378 GGTGTGCATGCCTTTTGACCAT
1 GGTGTGCATGCCTTTTGACCAT
* *
142400 CGCGTGCATGC
1 GGTGTGCATGC
142411 TTCAGTGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.13, C:0.25, G:0.29, T:0.33
Consensus pattern (22 bp):
GGTGTGCATGCCTTTTGACCAT
Found at i:142586 original size:19 final size:19
Alignment explanation
Indices: 142562--142599 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
142552 TGGTGCGAGT
*
142562 AGAAGCTATGGTTGTGGGC
1 AGAAGCTATGGTTGCGGGC
*
142581 AGAAGCTGTGGTTGCGGGC
1 AGAAGCTATGGTTGCGGGC
142600 TTGGCCCAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.18, C:0.13, G:0.45, T:0.24
Consensus pattern (19 bp):
AGAAGCTATGGTTGCGGGC
Found at i:150172 original size:130 final size:130
Alignment explanation
Indices: 149947--150182 Score: 328
Period size: 130 Copynumber: 1.8 Consensus size: 130
149937 GGTCCCTTTT
* * * * *
149947 TGCGTGCTGTCGATCCTGCTGCAAGTCTTGTTGCCCCAACCCTCAATTCGATCTGAGCTTTGATT
1 TGCGTGCTGTCGATCCTGCTGCAAGTCTTGCTACCACAACCCTCAATTCGATCTGAGCTTAGACT
* * *
150012 GGGAATGAACTCTGTATGCCTAAGTTAACCTACGAAACAAGTCGAGGATCGACCTAGTCCCCCTC
66 AGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACAAGTCGAGGATCGACCTAGTCCCCCTC
* *** * * *
150077 TGCGTGCTGTCGATCTTGCTGTGGGTCTTGCTACCACAACCCTCGATTTGATCTGATCTTAGACT
1 TGCGTGCTGTCGATCCTGCTGCAAGTCTTGCTACCACAACCCTCAATTCGATCTGAGCTTAGACT
*
150142 AGGAATGGACTCCGTATGCCTAAGTCAACCTACGAAACAAG
66 AGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACAAG
150183 CGGGCAGGCA
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
130 90 1.00
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (130 bp):
TGCGTGCTGTCGATCCTGCTGCAAGTCTTGCTACCACAACCCTCAATTCGATCTGAGCTTAGACT
AGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACAAGTCGAGGATCGACCTAGTCCCCCTC
Found at i:151623 original size:45 final size:45
Alignment explanation
Indices: 151544--151640 Score: 115
Period size: 45 Copynumber: 2.2 Consensus size: 45
151534 ATATGGTCCC
** * * * **
151544 TGGTGCGTGCGGTTGCCTCGATTACTATCGGCACATGCTGGGCCT
1 TGGTGCGTGCGGTTGCCTCGAGCACCATCAGCACAAGCTGACCCT
151589 TGGTGCAG-GCGGTTGCCTCGAGCACCATCAGCACAAGCTGACCCT
1 TGGTGC-GTGCGGTTGCCTCGAGCACCATCAGCACAAGCTGACCCT
151634 TGGTGCG
1 TGGTGCG
151641 AGCACTTGCC
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
44 1 0.02
45 42 0.95
46 1 0.02
ACGTcount: A:0.14, C:0.29, G:0.33, T:0.24
Consensus pattern (45 bp):
TGGTGCGTGCGGTTGCCTCGAGCACCATCAGCACAAGCTGACCCT
Found at i:151683 original size:45 final size:45
Alignment explanation
Indices: 151601--151721 Score: 118
Period size: 45 Copynumber: 2.7 Consensus size: 45
151591 GTGCAGGCGG
* * * * * *
151601 TTGCCTCGAGCACCATCAGCACAAGCTGACCCTTGGTGCGAG-CA
1 TTGCCTCGACCACCATCGGCAGAAGATGGCCCCTGGTGCGAGTCA
* * * *
151645 CTTGCCTTGACCACCATCGGCAGAAGATGGCCCCTGGTGTGGGTGA
1 -TTGCCTCGACCACCATCGGCAGAAGATGGCCCCTGGTGCGAGTCA
* *
151691 TTGCCTCGATCACCATCGGTAGAAGATGGCC
1 TTGCCTCGACCACCATCGGCAGAAGATGGCC
151722 TTTGGTATGA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
45 61 0.98
46 1 0.02
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.21
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCAGAAGATGGCCCCTGGTGCGAGTCA
Found at i:151750 original size:45 final size:45
Alignment explanation
Indices: 151656--151752 Score: 104
Period size: 45 Copynumber: 2.2 Consensus size: 45
151646 TTGCCTTGAC
* * * * * *
151656 CACCATCGGCAGAAGATGGCCCCTGGTGTGGGTGATTGCCTCGAT
1 CACCATCGGCAGAAGATGGCCCCTGGTATGAGAGATTACCTCAAA
* ** *
151701 CACCATCGGTAGAAGATGGCCTTTGGTATGAGAGGTTACCTCAAA
1 CACCATCGGCAGAAGATGGCCCCTGGTATGAGAGATTACCTCAAA
151746 CACCATC
1 CACCATC
151753 AACACATGCT
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.23
Consensus pattern (45 bp):
CACCATCGGCAGAAGATGGCCCCTGGTATGAGAGATTACCTCAAA
Found at i:151766 original size:21 final size:21
Alignment explanation
Indices: 151740--151783 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
151730 GAGAGGTTAC
151740 CTCAAACACCATCAACACATG
1 CTCAAACACCATCAACACATG
*
151761 CTCAAACACCATCAGCACATG
1 CTCAAACACCATCAACACATG
151782 CT
1 CT
151784 GGGCCTTGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.39, G:0.07, T:0.16
Consensus pattern (21 bp):
CTCAAACACCATCAACACATG
Found at i:156967 original size:89 final size:90
Alignment explanation
Indices: 156839--157051 Score: 214
Period size: 89 Copynumber: 2.4 Consensus size: 90
156829 CTGGCATATG
* * * * * * *
156839 CCTCGACCAACATCGACACAAGCCGGCCCTTGGTGCGGGC-ACTTACCTCGACCACCATCAATAG
1 CCTCGAACACCATCAACACATGCTGGGCCTTGGTACGGGCGA-TTACCTCGACCACCATCAATAG
* * **** *
156903 AAGATGGCCCTTGGTGTGGGCGGTTA
65 AAGATGGCCCCTAGTACACGCAGTTA
* ** * *
156929 CGTCGAACACCATC-ACACATGCTGGGCCTTGGTACGGGCGATTGTCTCGATCACCATCAGTAGA
1 CCTCGAACACCATCAACACATGCTGGGCCTTGGTACGGGCGATTACCTCGACCACCATCAATAGA
* *
156993 AGATGGCCCCTAGTACACGTAGTTG
66 AGATGGCCCCTAGTACACGCAGTTA
157018 CCTCGAACACCATCAACACATGCTGGGCCTTGGT
1 CCTCGAACACCATCAACACATGCTGGGCCTTGGT
157052 GCGAGCAGTT
Statistics
Matches: 100, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
89 69 0.69
90 31 0.31
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.21
Consensus pattern (90 bp):
CCTCGAACACCATCAACACATGCTGGGCCTTGGTACGGGCGATTACCTCGACCACCATCAATAGA
AGATGGCCCCTAGTACACGCAGTTA
Found at i:157062 original size:45 final size:45
Alignment explanation
Indices: 156790--157113 Score: 170
Period size: 45 Copynumber: 7.2 Consensus size: 45
156780 GGTGCTGACG
* * * *
156790 GTTGCCTC-AACCACCATCGACACGTGTTGGGCCTTGGTGCTGGCA
1 GTTGCCTCGAA-CACCATCAACACATGCTGGGCCTTGGTGCGGGCA
* * * * * *
156835 -TATGCCTCGACCAACATCGACACAAGCCGGCCCTTGGTGCGGGCA
1 GT-TGCCTCGAACACCATCAACACATGCTGGGCCTTGGTGCGGGCA
* * * * * * * * * *
156880 CTTACCTCGACCACCATCAATAGAAGATGGCCCTTGGTGTGGGCG
1 GTTGCCTCGAACACCATCAACACATGCTGGGCCTTGGTGCGGGCA
* * *
156925 GTTACGTCGAACACCATC-ACACATGCTGGGCCTTGGTACGGGC-
1 GTTGCCTCGAACACCATCAACACATGCTGGGCCTTGGTGCGGGCA
* * ** * * * * * * * ** *
156968 GATTGTCTCGATCACCATCAGTAGAAGATGGCCCCTAGTACACGTA
1 G-TTGCCTCGAACACCATCAACACATGCTGGGCCTTGGTGCGGGCA
*
157014 GTTGCCTCGAACACCATCAACACATGCTGGGCCTTGGTGCGAGCA
1 GTTGCCTCGAACACCATCAACACATGCTGGGCCTTGGTGCGGGCA
* * * ** * *
157059 GTTGCCTCAAAAACCATCAGCATGTTCTAGGCCTTGGTGCGGGCA
1 GTTGCCTCGAACACCATCAACACATGCTGGGCCTTGGTGCGGGCA
**
157104 CATGCCTCGA
1 GTTGCCTCGA
157114 GCTGGTGGGG
Statistics
Matches: 206, Mismatches: 67, Indels: 12
0.72 0.24 0.04
Matches are distributed among these distances:
43 1 0.00
44 32 0.16
45 170 0.83
46 3 0.01
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (45 bp):
GTTGCCTCGAACACCATCAACACATGCTGGGCCTTGGTGCGGGCA
Found at i:165050 original size:45 final size:45
Alignment explanation
Indices: 164828--165052 Score: 159
Period size: 45 Copynumber: 5.0 Consensus size: 45
164818 AACCACCAAT
* * * *
164828 GGTAGAAGATGGCCCCTAGTGT-GGCCAGTTGCATGGAACACCATC
1 GGTAGAAGATGGCCTCTGGTGTAGG-CGGTTGCATCGAACACCATC
* * * * * * * * * *
164873 GGCACATGCTGGGCCT-TAGTGTAAGCGGCTGCCTCGATCACTATC
1 GGTAGAAGAT-GGCCTCTGGTGTAGGCGGTTGCATCGAACACCATC
* *
164918 GGTAGAAGATGGCCCCTGGTGTAGACGGTTGCATCGAACACCATC
1 GGTAGAAGATGGCCTCTGGTGTAGGCGGTTGCATCGAACACCATC
* * * * * * * * * *
164963 GGCACATGCTGGGCCT-TGGCGTAAGCGGCTGCCTCGATCACCATT
1 GGTAGAAGAT-GGCCTCTGGTGTAGGCGGTTGCATCGAACACCATC
*
165008 GGTAGAAGATGGCCTCTGGTGCAGGCGGTTGCATCGAACACCATC
1 GGTAGAAGATGGCCTCTGGTGTAGGCGGTTGCATCGAACACCATC
165053 AGCACATGCT
Statistics
Matches: 128, Mismatches: 47, Indels: 10
0.69 0.25 0.05
Matches are distributed among these distances:
44 9 0.07
45 110 0.86
46 9 0.07
ACGTcount: A:0.21, C:0.27, G:0.31, T:0.21
Consensus pattern (45 bp):
GGTAGAAGATGGCCTCTGGTGTAGGCGGTTGCATCGAACACCATC
Found at i:165073 original size:45 final size:45
Alignment explanation
Indices: 164855--165122 Score: 223
Period size: 45 Copynumber: 6.0 Consensus size: 45
164845 AGTGTGGCCA
* * * *
164855 GTTGCATGGAACACCATCGGCACATGCTGGGCCTTAGTGTAAGCG
1 GTTGCATCGAACACCATCGGCACATGCTGGGCCTTGGTGCAGGCG
* * * * * * * * * * * *
164900 GCTGCCTCGATCACTATCGGTAGAAGATGGCCCCTGGTGTAGACG
1 GTTGCATCGAACACCATCGGCACATGCTGGGCCTTGGTGCAGGCG
* * *
164945 GTTGCATCGAACACCATCGGCACATGCTGGGCCTTGGCGTAAGCG
1 GTTGCATCGAACACCATCGGCACATGCTGGGCCTTGGTGCAGGCG
* * * * * * * *
164990 GCTGCCTCGATCACCATTGGTAGAAGAT-GGCCTCTGGTGCAGGCG
1 GTTGCATCGAACACCATCGGCACATGCTGGGCCT-TGGTGCAGGCG
* *
165035 GTTGCATCGAACACCATCAGCACATGCTGGGCCTTGGTGCAGGCA
1 GTTGCATCGAACACCATCGGCACATGCTGGGCCTTGGTGCAGGCG
* * * *
165080 GTTGCCTTGAACACCATCGGCACGTGCTAGGCCTTGGTGCAGG
1 GTTGCATCGAACACCATCGGCACATGCTGGGCCTTGGTGCAGG
165123 TGTCACGGGC
Statistics
Matches: 168, Mismatches: 53, Indels: 4
0.75 0.24 0.02
Matches are distributed among these distances:
44 5 0.03
45 158 0.94
46 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (45 bp):
GTTGCATCGAACACCATCGGCACATGCTGGGCCTTGGTGCAGGCG
Found at i:165086 original size:90 final size:90
Alignment explanation
Indices: 164598--165099 Score: 443
Period size: 90 Copynumber: 5.6 Consensus size: 90
164588 GCCTCAAACT
* * * * * **
164598 CCATCGGCACATGTTGGGCCTTGGTGCAGGTGGTT-CTCTCGAGCACCATCGGCACAAGCCGGCC
1 CCATCGGCACATGCTGGGCCTTGGTGCAGGCGGTTGC-CTCGATCACCATCGGTAGAAGATGGCC
* ** * * * * *
164662 CATGGTGTGGGCACTTGCCTTGACCA
65 CCTGGTGCAGACAGTTGCATCGAACA
* * * * * * *
164688 CCATCAGCAGAAGAT-GGCCTCTAGTGCAGGTGGTTGCCTCGATCACCATCGATAGAAGATGGCC
1 CCATCGGCACATGCTGGGCCT-TGGTGCAGGCGGTTGCCTCGATCACCATCGGTAGAAGATGGCC
* * * *
164752 CCTGGTGCCGACAGTTGCCTTGAACT
65 CCTGGTGCAGACAGTTGCATCGAACA
* * ** * * *
164778 CCATCGGCACATTCTGGGCCTTGGTGCGGGCACTTACCTCAACCACCAAT-GGTAGAAGATGGCC
1 CCATCGGCACATGCTGGGCCTTGGTGCAGGCGGTTGCCTCGATCACC-ATCGGTAGAAGATGGCC
* ** * *
164842 CCTAGTGTGGCCAGTTGCATGGAACA
65 CCTGGTGCAGACAGTTGCATCGAACA
* * * * *
164868 CCATCGGCACATGCTGGGCCTTAGTGTAAGCGGCTGCCTCGATCACTATCGGTAGAAGATGGCCC
1 CCATCGGCACATGCTGGGCCTTGGTGCAGGCGGTTGCCTCGATCACCATCGGTAGAAGATGGCCC
* *
164933 CTGGTGTAGACGGTTGCATCGAACA
66 CTGGTGCAGACAGTTGCATCGAACA
* * * * * *
164958 CCATCGGCACATGCTGGGCCTTGGCGTAAGCGGCTGCCTCGATCACCATTGGTAGAAGATGGCCT
1 CCATCGGCACATGCTGGGCCTTGGTGCAGGCGGTTGCCTCGATCACCATCGGTAGAAGATGGCCC
* *
165023 CTGGTGCAGGCGGTTGCATCGAACA
66 CTGGTGCAGACAGTTGCATCGAACA
* * * *
165048 CCATCAGCACATGCTGGGCCTTGGTGCAGGCAGTTGCCTTGAACACCATCGG
1 CCATCGGCACATGCTGGGCCTTGGTGCAGGCGGTTGCCTCGATCACCATCGG
165100 CACGTGCTAG
Statistics
Matches: 335, Mismatches: 72, Indels: 10
0.80 0.17 0.02
Matches are distributed among these distances:
89 7 0.02
90 320 0.96
91 8 0.02
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.22
Consensus pattern (90 bp):
CCATCGGCACATGCTGGGCCTTGGTGCAGGCGGTTGCCTCGATCACCATCGGTAGAAGATGGCCC
CTGGTGCAGACAGTTGCATCGAACA
Found at i:175456 original size:158 final size:156
Alignment explanation
Indices: 175063--175448 Score: 434
Period size: 158 Copynumber: 2.4 Consensus size: 156
175053 GAATGCACTA
* *
175063 TGTATGCCTAAGTCAACCCACAAAACAAGTGTGCGGGCACTGAGCTGGCCAGAGAGCCAGAATGC
1 TGTATGCCTAAGTCAACCCACAAAACAAGTGTGCGGGCACTGAGCCGGCCAGAGAGGCAGAATGC
* * * * * *
175128 GCAAGCTAGGGATCGACCTAGTCCCCCTCGATGTGCTACGGATCCTGCTGTAAATCCCTCAGTCT
66 GCAAGC-AAGGATCGACCCAGTCCCCCTCGAGGTGATACCGATCCTGCTGCAAATCCCTCAGTCT
* *
175193 GGCTGGGGCTTAGACTAGGAATAAACT
130 GACTGGGGCTTAGACTAGGAACAAACT
** *** *
175220 TCGTATGCCTAAGTCAACCCACAAAACAAACGTGCGGGTGTTGAGCCGACCAGAGAGGCAGAATG
1 T-GTATGCCTAAGTCAACCCACAAAACAAGTGTGCGGGCACTGAGCCGGCCAGAGAGGCAGAATG
* * * * ** *
175285 CGCAAGCCAAGGATC-AGCCCGGTCCCTCTTTG-GGTGATGCCGATCCTGCTGCAGGTCCCTCGG
65 CGCAAG-CAAGGATCGA-CCCAGTCCC-CCTCGAGGTGATACCGATCCTGCTGCAAATCCCTCAG
*
175348 TCTGACTGGGGCTTAGACTAGGAACGAACT
127 TCTGACTGGGGCTTAGACTAGGAACAAACT
** * * *
175378 CTGTATGCCTAAGTCAACCCATGAAACAAGTGTGCGGGCACTAAGCCGGCCATAGAGGCAGGATG
1 -TGTATGCCTAAGTCAACCCACAAAACAAGTGTGCGGGCACTGAGCCGGCCAGAGAGGCAGAATG
*
175443 TGCAAG
65 CGCAAG
175449 TCGAGGATTG
Statistics
Matches: 188, Mismatches: 36, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
157 2 0.01
158 181 0.96
159 5 0.03
ACGTcount: A:0.26, C:0.27, G:0.28, T:0.19
Consensus pattern (156 bp):
TGTATGCCTAAGTCAACCCACAAAACAAGTGTGCGGGCACTGAGCCGGCCAGAGAGGCAGAATGC
GCAAGCAAGGATCGACCCAGTCCCCCTCGAGGTGATACCGATCCTGCTGCAAATCCCTCAGTCTG
ACTGGGGCTTAGACTAGGAACAAACT
Found at i:175500 original size:158 final size:158
Alignment explanation
Indices: 175064--175500 Score: 392
Period size: 158 Copynumber: 2.8 Consensus size: 158
175054 AATGCACTAT
** * * * *
175064 GTATGCCTAAGTCAACCCACAAAACAAGTGTGCGGGCACTGAGCTGGCCAGAGAGCCAGAATGCG
1 GTATGCCTAAGTCAACCCACAAAACAAACGTGCGGGCACTAAGCCGACCAGAGAGGCAGAATGCG
* * * * * ** * * * * **
175129 CAAGCTAGGGATC-GACCTAGTCCCCCTCGATGTGCTACGGATCCTGCTGTAAATCCCTCAGTCT
66 CAAGCCAAGGATCAGCCCGA-TCCCTCTTTACGTGATGCCGATCCTGCTGTAGGTCCCTCAGTCT
* *
175193 GGCTGGGGCTTAGACTAGGAATAAACTTC
130 GACTGGGGCTTAGACTAGGAACAAACTTC
*** *
175222 GTATGCCTAAGTCAACCCACAAAACAAACGTGCGGGTGTTGAGCCGACCAGAGAGGCAGAATGCG
1 GTATGCCTAAGTCAACCCACAAAACAAACGTGCGGGCACTAAGCCGACCAGAGAGGCAGAATGCG
* ** * *
175287 CAAGCCAAGGATCAGCCCGGTCCCTCTTTGGGTGATGCCGATCCTGCTGCAGGTCCCTCGGTCTG
66 CAAGCCAAGGATCAGCCCGATCCCTCTTTACGTGATGCCGATCCTGCTGTAGGTCCCTCAGTCTG
*
175352 ACTGGGGCTTAGACTAGGAACGAAC-TC
131 ACTGGGGCTTAGACTAGGAACAAACTTC
** ** * * * *
175379 TGTATGCCTAAGTCAACCCATGAAACAAGTGTGCGGGCACTAAGCCGGCCATAGAGGCAGGATGT
1 -GTATGCCTAAGTCAACCCACAAAACAAACGTGCGGGCACTAAGCCGACCAGAGAGGCAGAATGC
* * ** * * * * * * *
175444 GCAAGTCGAGGATTGGCTCGATTCTTTTTTACGTGCTGTCGATCCTGCTGTGGGTCC
65 GCAAGCCAAGGATCAGCCCGATCCCTCTTTACGTGATGCCGATCCTGCTGTAGGTCC
175501 TGCTGTCTTA
Statistics
Matches: 222, Mismatches: 55, Indels: 4
0.79 0.20 0.01
Matches are distributed among these distances:
157 2 0.01
158 217 0.98
159 3 0.01
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.21
Consensus pattern (158 bp):
GTATGCCTAAGTCAACCCACAAAACAAACGTGCGGGCACTAAGCCGACCAGAGAGGCAGAATGCG
CAAGCCAAGGATCAGCCCGATCCCTCTTTACGTGATGCCGATCCTGCTGTAGGTCCCTCAGTCTG
ACTGGGGCTTAGACTAGGAACAAACTTC
Found at i:178610 original size:19 final size:19
Alignment explanation
Indices: 178586--178622 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
178576 TCTGATCCGA
178586 GCTTAGACT-GAGAATGAAT
1 GCTTAGACTAG-GAATGAAT
178605 GCTTAGACTAGGAATGAA
1 GCTTAGACTAGGAATGAA
178623 CTCCGTATGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.38, C:0.11, G:0.27, T:0.24
Consensus pattern (19 bp):
GCTTAGACTAGGAATGAAT
Found at i:180250 original size:45 final size:45
Alignment explanation
Indices: 180186--180719 Score: 228
Period size: 45 Copynumber: 11.9 Consensus size: 45
180176 CCTGGTGCAT
* * *
180186 GCGGTTACCTCGAACACCATCGGCACATGCTGGGCCTTGCTGAGG
1 GCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCTTGATGCGG
* * * * *
180231 GCGGTTGCCTCGAGCACCATCGGAACAAG-TCGGTCCTTGGTGCGG
1 GCGGTTGCCTCGAACACCATCGGCACATGCT-GGGCCTTGATGCGG
** * * * * * * * *
180276 GCACTTGCCTC-AACCACCATTGACAGAAGATGGCCCCTAATGCGG
1 GCGGTTGCCTCGAA-CACCATCGGCACATGCTGGGCCTTGATGCGG
* * * *
180321 GCGGTTGCCTCAAACACCATTGGGACATGCTAGGCCTTGATGCGG
1 GCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCTTGATGCGG
* * * * * *
180366 GCGATTGCCTCGAATAGCATCGGCACGTGCTGGGCCTTGGTGCGA
1 GCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCTTGATGCGG
* * * * * * * * * *
180411 GCAGTTACTTCGACCATCATCGACACGTGCTGGGCCTTGGTACTG
1 GCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCTTGATGCGG
* *** * * * * * *
180456 ACACATGCCTCGACCACCATCGGCACAAG-TCGGCCCTTGGTACGA
1 GCGGTTGCCTCGAACACCATCGGCACATGCT-GGGCCTTGATGCGG
** * * ** * * * * * * * *
180501 GCACTTGCCTTGACCACCATCGATAAAAGATAGCCCCTGGTGTGG
1 GCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCTTGATGCGG
* * * * * * *
180546 ACAGTTACGTTGAACACCATCGACACATGCTGGGCCTTGGTGCGG
1 GCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCTTGATGCGG
* * * ** * * * * * * * *
180591 GTGGTTGCCTCGATCACTATCGATAGAAGATGGTCCCTGGTACAG
1 GCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCTTGATGCGG
* *
180636 GTGGTTGCCTCGAACACCATCGGCACATGCTGGGCCTTGGTGCGG
1 GCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCTTGATGCGG
** * *
180681 GTAGTTGCCTTGAACACCATCGGCACGTGCTGGGCCTTG
1 GCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCTTG
180720 GTAAGAGCAC
Statistics
Matches: 367, Mismatches: 116, Indels: 12
0.74 0.23 0.02
Matches are distributed among these distances:
44 3 0.01
45 360 0.98
46 4 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (45 bp):
GCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCTTGATGCGG
Found at i:180735 original size:45 final size:45
Alignment explanation
Indices: 180641--180738 Score: 124
Period size: 45 Copynumber: 2.2 Consensus size: 45
180631 TACAGGTGGT
* ** * * **
180641 TGCCTCGAACACCATCGGCACATGCTGGGCCTTGGTGCGGGTAGT
1 TGCCTTGAACACCATCGGCACATGCTGGGCCTTGGTAAGAGCACA
*
180686 TGCCTTGAACACCATCGGCACGTGCTGGGCCTTGGTAAGAGCACA
1 TGCCTTGAACACCATCGGCACATGCTGGGCCTTGGTAAGAGCACA
180731 TGCCTTGA
1 TGCCTTGA
180739 GCTGGTGCGG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (45 bp):
TGCCTTGAACACCATCGGCACATGCTGGGCCTTGGTAAGAGCACA
Found at i:194649 original size:825 final size:825
Alignment explanation
Indices: 193064--194681 Score: 2445
Period size: 825 Copynumber: 2.0 Consensus size: 825
193054 ACTATCTAGA
* * * *
193064 GAAACCACAGCTAAAGGAACGGGCTTGGTGGAATTAGCAGGGAAAGAAGACCCTGTTGAGCTTGA
1 GAAACCACAGCCAAAGGAACGGGCTTGATGGAATCAGCAGGGAAAGAAGACCCTGTTGAGCTTAA
*
193129 CTCTAGTCCGACTTTGTGAAATGACTTGAAAAGTGTAGGATAAGTGGGAACCCCCTGGTGAAATT
66 CTCTAGTCCGACTTTGTGAAATGACTTGAAAAGTGTAAGATAAGTGGGAACCCCCTGGTGAAATT
* * * *
193194 GAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAATTGAGGGCGGGGCACGACCCTTT
131 GAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAATCGAAGGCAGGGCACGACCCATT
* * * *
193259 CTTTTGGACCCAAGCTCGACCTTAGCCAGTCGATCTGGGTGGAAGACATTGTTAGGTAGGGAGTT
196 CTTTTGGACCCAAGCTAGACCTGAGCCAGTCGATCTGGGTAGAAGACATTGTCAGGTAGGGAGTT
* *** *
193324 TGGCTAGGGCGGCACATCTATTAAAAGATAATGTAGGTGTCCTACAATGAGCTCAACGAGAACAA
261 TGGCTAGGACGGCACATCTATTAAAAGATAACACAGATGTCCTACAATGAGCTCAACGAGAACAA
* * * *
193389 AAATCTCGTGTGGAACAAAAGGGTAAAAGCTCATTCGATTCTGATTTTTGGTACGAATACAAACC
326 AAATCTCATGTGGAACAAAAAGGTAAAAGCTCATTCGATTCTGATTTCTAGTACGAATACAAACC
* ** *
193454 GTGAAAGCGTGGCGTATCGATCCTTTAGACCTTTGGGATTTGAAGCTAGAGGTGTCAAAAAAGTT
391 GTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCAGGATTTGAAACTAGAGGTGTCAAAAAAGTT
*
193519 ACCATAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAATGACGTTGCTTTTTGATCCTTCGA
456 ACCATAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAACGACGTTGCTTTTTGATCCTTCGA
* * *
193584 TGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAATATTGGATTGTTCACCCACCAATAG
521 AGTCGGCTCTTCCTATCATTGTGAAGCAAAATTCACCAAATATTGGATTGTTCACCCACCAACAG
* * * * *
193649 GGAACATGAGTTGGGTTTGGACCATCGTGAGAAAGGTTAGTTTTACCCTACTGATGGTAGCATCG
586 GGAACATGAGCTGGGTTTAGACCATCATGAGAAAGGTTAGTTTTACCCTACTGATGGCAACATCG
* *
193714 TGATAGTAATTCAACCTAGTACGAGAGGAACCATTGATTTGCACAATTGGTCATCGCGCTTAGTT
651 CGATAGTAATTCAACCTAGTACGAGAGGAACCATTGATTCGCACAATTGGTCATCGCGCTTAGTT
* * ** *
193779 GAAAAGCCAGTGACGTGAAGCTACCATGTGCTGGATTATGACTGAACACCTCTAAGTCAAAATTC
716 AAAAAGCCAGTGACATGAAGCTACCATGCACTGGATTAGGACTGAACACCTCTAAGTCAAAA-TC
*
193844 T-GGTTAGAAGCGACGCATGTGCCTGCCGCTTCATTACTATCAAAT
780 TGGGCTAGAAGCGACGCATGTGCCTGCCGCTTCATTACTATCAAAT
*
193889 GAAACCACAGCCAAGGGAACGGGCTTGATGGAATCAGCAGGGAAAGAAGACCCTGTTGAGCTTAA
1 GAAACCACAGCCAAAGGAACGGGCTTGATGGAATCAGCAGGGAAAGAAGACCCTGTTGAGCTTAA
* * *
193954 CTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAAGATAAGTGGGAGCCCCC-GAGTGAAAT
66 CTCTAGTCCGACTTTGTGAAATGACTTGAAAAGTGTAAGATAAGTGGGAACCCCCTG-GTGAAAT
* * *
194018 TGAAATACCACTACTTTTAATGTTATTTTACTTATTTCGTGAATCGAAGGCAGGGCATGACCCAT
130 TGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAATCGAAGGCAGGGCACGACCCAT
* * * * *
194083 TCTTTTGGGCCCAAGGTTAG-CCTCGA-TCGGTCGATCTGGGTAGAAGACATTGTCAGGTGGGGA
195 TCTTTTGGACCCAA-GCTAGACCT-GAGCCAGTCGATCTGGGTAGAAGACATTGTCAGGTAGGGA
* * *
194146 GTTTGGCTAGGATGGCACATCTATTAAAAGATAACACCGATGTCCTA-AGATGAGCTTAACGAGA
258 GTTTGGCTAGGACGGCACATCTATTAAAAGATAACACAGATGTCCTACA-ATGAGCTCAACGAGA
* * * *
194210 ATAAAAATCTCATGTGGAACAAAAAGGTAAAAGCTCGTTTGATTCTGATTTCTAGTATGAATACA
322 ACAAAAATCTCATGTGGAACAAAAAGGTAAAAGCTCATTCGATTCTGATTTCTAGTACGAATACA
* *
194275 AATCGTGAAAGTGTGGCCTATCGATCCTTTAGACCTTCAGGATTTGAAACTAGAGGTGTCAAAAA
387 AACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCAGGATTTGAAACTAGAGGTGTCAAAAA
*
194340 AGTTACCATAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCT
452 AGTTACCATAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAACGACGTTGCTTTTTGATCCT
* * *
194405 TCGAAGTTGGCTCTTCCTATCATTGTGAAGCAAAATTCACCAAGTGTTGGATTGTTCACCCACCA
517 TCGAAGTCGGCTCTTCCTATCATTGTGAAGCAAAATTCACCAAATATTGGATTGTTCACCCACCA
* * *
194470 ACAGGGAACGTGAGCTGGGTTTAGACCATCATGAGATAGGTTAGTTTTACCCTACTGATGGCAAT
582 ACAGGGAACATGAGCTGGGTTTAGACCATCATGAGAAAGGTTAGTTTTACCCTACTGATGGCAAC
* * *
194535 GTCGCGATAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCGCACAATTGGTCATCGTGCTT
647 ATCGCGATAGTAATTCAACCTAGTACGAGAGGAACCATTGATTCGCACAATTGGTCATCGCGCTT
* * * * *
194600 GGTTAAAAAGCTAGTGGCATGAAGCTATCATGCACTGGATTAGGACTGAACACCTCTAAGTCAGA
712 AGTTAAAAAGCCAGTGACATGAAGCTACCATGCACTGGATTAGGACTGAACACCTCTAAGTCAAA
194665 ATCTGGGCTAGAAGCGA
777 ATCTGGGCTAGAAGCGA
194682 TGCGTACGCC
Statistics
Matches: 709, Mismatches: 79, Indels: 10
0.89 0.10 0.01
Matches are distributed among these distances:
824 5 0.01
825 700 0.99
826 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (825 bp):
GAAACCACAGCCAAAGGAACGGGCTTGATGGAATCAGCAGGGAAAGAAGACCCTGTTGAGCTTAA
CTCTAGTCCGACTTTGTGAAATGACTTGAAAAGTGTAAGATAAGTGGGAACCCCCTGGTGAAATT
GAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAATCGAAGGCAGGGCACGACCCATT
CTTTTGGACCCAAGCTAGACCTGAGCCAGTCGATCTGGGTAGAAGACATTGTCAGGTAGGGAGTT
TGGCTAGGACGGCACATCTATTAAAAGATAACACAGATGTCCTACAATGAGCTCAACGAGAACAA
AAATCTCATGTGGAACAAAAAGGTAAAAGCTCATTCGATTCTGATTTCTAGTACGAATACAAACC
GTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCAGGATTTGAAACTAGAGGTGTCAAAAAAGTT
ACCATAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAACGACGTTGCTTTTTGATCCTTCGA
AGTCGGCTCTTCCTATCATTGTGAAGCAAAATTCACCAAATATTGGATTGTTCACCCACCAACAG
GGAACATGAGCTGGGTTTAGACCATCATGAGAAAGGTTAGTTTTACCCTACTGATGGCAACATCG
CGATAGTAATTCAACCTAGTACGAGAGGAACCATTGATTCGCACAATTGGTCATCGCGCTTAGTT
AAAAAGCCAGTGACATGAAGCTACCATGCACTGGATTAGGACTGAACACCTCTAAGTCAAAATCT
GGGCTAGAAGCGACGCATGTGCCTGCCGCTTCATTACTATCAAAT
Found at i:195617 original size:158 final size:158
Alignment explanation
Indices: 195337--195623 Score: 337
Period size: 158 Copynumber: 1.8 Consensus size: 158
195327 CCGATTGGGA
* * **
195337 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCCACCCATGAAATGAGCATCCAGACACTGGGC
1 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCATCCAGACACTGGGC
* * * *
195402 TGACCAGAGAGGTAAAATGCATTAGTCAAGGATCAACCCAATCCCCCTCTGCGTACTATCGATCC
66 TGACCAGAGAGGTAAAATGCATAAGCCAAGGATCAACCCAATCCCCCTCTGCATACTACCGATCC
195467 TACTGTAGGTCTTTTTGTCCGACTGGAG
131 TACTGTAGGTCTTTTTGTCCGACTGGAG
* ** * *
195495 CTTAGACTAGGAATGAAC-TCTGTATGCCTAAGTTAACCCATGAAACAAGTGTGCAGACACTGAG
1 CTTAGACTAGGAATGAACTTC-GTATGCCTAAGTCAACCCATGAAACAAGCATCCAGACACTGGG
* ** * * * * *
195559 -TCGGCCAGAGAGGTAGGATGC-TCAAGCCGAGGATCGACCCGATCCCCTTCTGTATACTACCGA
65 CT-GACCAGAGAGGTAAAATGCAT-AAGCCAAGGATCAACCCAATCCCCCTCTGCATACTACCGA
195622 TC
128 TC
195624 TTGCTACGGG
Statistics
Matches: 105, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
157 4 0.04
158 101 0.96
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAGCATCCAGACACTGGGC
TGACCAGAGAGGTAAAATGCATAAGCCAAGGATCAACCCAATCCCCCTCTGCATACTACCGATCC
TACTGTAGGTCTTTTTGTCCGACTGGAG
Found at i:195709 original size:26 final size:26
Alignment explanation
Indices: 195666--195716 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
195656 CTGATCTGAA
195666 CTTAGACTGGAAATGAACTCCGTATT
1 CTTAGACTGGAAATGAACTCCGTATT
195692 CTTAGACTAGGAAA-GAACTCCGTAT
1 CTTAGACT-GGAAATGAACTCCGTAT
195717 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATT
Found at i:196327 original size:149 final size:150
Alignment explanation
Indices: 196044--196364 Score: 392
Period size: 149 Copynumber: 2.1 Consensus size: 150
196034 TGCCAAAGCT
** * * * * * *
196044 ATTTTTATGGCCCATGAATTCATATGAGCCCTCCCTAACGCTCGCGCACCACGCGTGGGTATCTT
1 ATTTTTATGGCCTGTGAATTCACATGAGCACTCCCTAACACCCGCACACCACGCGCGGGTATCTT
*** * * *
196109 AAGCCCAGGCCAAGCACCAATGCGTGCCATGATCGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
66 AAGCCCAGGCCAAGCACCAATGCACACCATGATCAGGCGATAGGTGGGTTTAGGCACATCTTCAT
196174 ATTTCTACCATGCCAATACC
131 ATTTCTACCATGCCAATACC
* * * *
196194 ATTTTTATGGCCTGTGAATTCACATGAGCACTCCTTAGCACCCGCACACCATGCGCGGGTGTCTT
1 ATTTTTATGGCCTGTGAATTCACATGAGCACTCCCTAACACCCGCACACCACGCGCGGGTATCTT
* ** * *
196259 GAGCCTGGGCCGAGCA-CAATGCACACCATGATCAGGCGATAGGTGGTTTTAGGCACATCTTCAT
66 AAGCCCAGGCCAAGCACCAATGCACACCATGATCAGGCGATAGGTGGGTTTAGGCACATCTTCAT
* *
196323 ATTTCTGCCATGCCAATGCC
131 ATTTCTACCATGCCAATACC
* *
196343 ATTTTTATGGCTTGTAAATTCA
1 ATTTTTATGGCCTGTGAATTCA
196365 TACAATGGTC
Statistics
Matches: 144, Mismatches: 27, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
149 79 0.55
150 65 0.45
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (150 bp):
ATTTTTATGGCCTGTGAATTCACATGAGCACTCCCTAACACCCGCACACCACGCGCGGGTATCTT
AAGCCCAGGCCAAGCACCAATGCACACCATGATCAGGCGATAGGTGGGTTTAGGCACATCTTCAT
ATTTCTACCATGCCAATACC
Found at i:196982 original size:45 final size:45
Alignment explanation
Indices: 196933--197024 Score: 114
Period size: 45 Copynumber: 2.0 Consensus size: 45
196923 GTATAGTGAT
** *
196933 GGCACATGCATCGACCATGATCGGCACGGGCT-GCCCTTTGGTACA
1 GGCACATGCATCGACCACCATCGGCACGAGCTGGCCC-TTGGTACA
* * *
196978 GGCACTTGCCTCGACCACCATCGGCACTAGCTGGCCCTTGGTACA
1 GGCACATGCATCGACCACCATCGGCACGAGCTGGCCCTTGGTACA
197023 GG
1 GG
197025 TGTCACACCC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
45 36 0.90
46 4 0.10
ACGTcount: A:0.18, C:0.34, G:0.28, T:0.20
Consensus pattern (45 bp):
GGCACATGCATCGACCACCATCGGCACGAGCTGGCCCTTGGTACA
Found at i:203073 original size:90 final size:90
Alignment explanation
Indices: 202977--203326 Score: 341
Period size: 90 Copynumber: 3.9 Consensus size: 90
202967 TGCAGGTGGT
* * *
202977 TGCCTCGATCACCATCGATAGAAGATGGCCCCTGGTGCT-GACAGTTGCCTTGAACTCCATCGGC
1 TGCCTCGATCACCATCGATAGAAGATGGCCCCTGGTG-TAGACAGTTGCATTGAACACCATCAGC
* **
203041 ACATTCTGGGCCTTGGTGCGGGC-AC
65 ACATTCTGGGCCTTGGCGCAAGCGAC
* * * * ** * * *
203066 TTACCTCGACCACCAAT-GATAAAAGATGGCCCCTGGTGTGGGTAGTTACGTGGAACACCATCAG
1 -TGCCTCGATCACC-ATCGATAGAAGATGGCCCCTGGTGTAGACAGTTGCATTGAACACCATCAG
* * *
203130 CACATGCTGGGCCTTGGCGTAAGCGGC
64 CACATTCTGGGCCTTGGCGCAAGCGAC
* * * * * *
203157 TGCCTCGATCACTATCGGTAGAAAATGGCCCCTGGTGCAGACGGTTGCATTGAACACCATCGGCA
1 TGCCTCGATCACCATCGATAGAAGATGGCCCCTGGTGTAGACAGTTGCATTGAACACCATCAGCA
* *
203222 CATGT-TGGGCCTTGGCGTAAGCGGC
66 CAT-TCTGGGCCTTGGCGCAAGCGAC
* * * *
203247 TGCCTCAATCACCATCTG-TAGAAGATGGCCTCTGGTGTAGCCGGTTGCATTGAACACCATCAGC
1 TGCCTCGATCACCATC-GATAGAAGATGGCCCCTGGTGTAGACAGTTGCATTGAACACCATCAGC
*
203311 ACATACTGGGCCTTGG
65 ACATTCTGGGCCTTGG
203327 TGCAGGCAAT
Statistics
Matches: 213, Mismatches: 40, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
89 3 0.01
90 206 0.97
91 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (90 bp):
TGCCTCGATCACCATCGATAGAAGATGGCCCCTGGTGTAGACAGTTGCATTGAACACCATCAGCA
CATTCTGGGCCTTGGCGCAAGCGAC
Found at i:203262 original size:45 final size:45
Alignment explanation
Indices: 203121--203262 Score: 108
Period size: 45 Copynumber: 3.2 Consensus size: 45
203111 TTACGTGGAA
* * *
203121 CACCATCAGCACATGCTGGGCCTTGGCGTAAGCGGCTGCCTCGAT
1 CACCATCGGCACATGATGGGCCTTGGCGTAAGCGGCTGCCTCAAT
* * * ** * * * * * * *
203166 CACTATCGGTAGAAAATGGCCCCTGGTG-CAGACGGTTGCATTGAA-
1 CACCATCGGCACATGATGGGCCTTGGCGTAAG-CGGCTGC-CTCAAT
*
203211 CACCATCGGCACATGTTGGGCCTTGGCGTAAGCGGCTGCCTCAAT
1 CACCATCGGCACATGATGGGCCTTGGCGTAAGCGGCTGCCTCAAT
203256 CACCATC
1 CACCATC
203263 TGTAGAAGAT
Statistics
Matches: 65, Mismatches: 28, Indels: 8
0.64 0.28 0.08
Matches are distributed among these distances:
44 5 0.08
45 56 0.86
46 4 0.06
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.21
Consensus pattern (45 bp):
CACCATCGGCACATGATGGGCCTTGGCGTAAGCGGCTGCCTCAAT
Found at i:203274 original size:180 final size:180
Alignment explanation
Indices: 202977--203326 Score: 418
Period size: 180 Copynumber: 1.9 Consensus size: 180
202967 TGCAGGTGGT
* * * *
202977 TGCCTCGATCACCATCGATAGAAGATGGCCCCTGGTGCTGACAGTTGCCTTGAACTCCATCGGCA
1 TGCCTCGATCACCATCGATAGAAAATGGCCCCTGGTGCAGACAGTTGCATTGAACACCATCGGCA
* ** * *
203042 CATTCTGGGCCTTGGTGCGGGCACTTACCTCGACCACCAATGATAAAAGATGGCCCCTGGTGTGG
66 CATTCTGGGCCTTGGCGCAAGCACTTACCTCAACCACCAATGATAAAAGATGGCCCCTGGTGTAG
** * *
203107 GTAGTTACGTGGAACACCATCAGCACATGCTGGGCCTTGGCGTAAGCGGC
131 CCAGTTACATGGAACACCATCAGCACATACTGGGCCTTGGCGTAAGCGGC
* * *
203157 TGCCTCGATCACTATCGGTAGAAAATGGCCCCTGGTGCAGACGGTTGCATTGAACACCATCGGCA
1 TGCCTCGATCACCATCGATAGAAAATGGCCCCTGGTGCAGACAGTTGCATTGAACACCATCGGCA
* * * * * * *
203222 CATGT-TGGGCCTTGGCGTAAGCGGC-TGCCTCAATCACCATCTG-TAGAAGATGGCCTCTGGTG
66 CAT-TCTGGGCCTTGGCGCAAGC-ACTTACCTCAACCACCA-ATGATAAAAGATGGCCCCTGGTG
* * *
203284 TAGCCGGTTGCATTGAACACCATCAGCACATACTGGGCCTTGG
128 TAGCCAGTTACATGGAACACCATCAGCACATACTGGGCCTTGG
203327 TGCAGGCAAT
Statistics
Matches: 141, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
180 137 0.97
181 4 0.03
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (180 bp):
TGCCTCGATCACCATCGATAGAAAATGGCCCCTGGTGCAGACAGTTGCATTGAACACCATCGGCA
CATTCTGGGCCTTGGCGCAAGCACTTACCTCAACCACCAATGATAAAAGATGGCCCCTGGTGTAG
CCAGTTACATGGAACACCATCAGCACATACTGGGCCTTGGCGTAAGCGGC
Found at i:213768 original size:158 final size:158
Alignment explanation
Indices: 213450--213757 Score: 368
Period size: 158 Copynumber: 1.9 Consensus size: 158
213440 CTGCTAGAAA
* * *
213450 TCCCTCGGTCTGGCTGGGGCTTAGACTAGGAATAAACTTTGTATGCCTAAGTCAACCCACAAAAC
1 TCCCTCGGTCTGACTGGGGCTTAGACTAGGAATAAACTCTATATGCCTAAGTCAACCCACAAAAC
* *
213515 AAACGTGCAGGTGTTGAACCGACCAGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCT
66 AAACGTGCAGGGGCTGAACCGACCAGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCT
*
213580 CTTTGGGTGATGTCGATCCTACTGCAGG
131 CTTTAGGTGATGTCGATCCTACTGCAGG
* * * **
213608 TCCCTCGGTCTGACTGGGGCTTCGACTGGGAATGAACTCTATATGCCTAAGTCAACCCATGAAAC
1 TCCCTCGGTCTGACTGGGGCTTAGACTAGGAATAAACTCTATATGCCTAAGTCAACCCACAAAAC
* * * * * * * * * * *
213673 AAATGTGC-GGGGACTGAGCCGACCATAGAGGTAGGATGTGCAAGTCGAGGATCGGCTCGAT-TC
66 AAACGTGCAGGGG-CTGAACCGACCAGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCC
* *
213736 TCTTTTATGTGCTGTCGATCCT
130 TC-TTTAGGTGATGTCGATCCT
213758 GCTGTGGGTC
Statistics
Matches: 124, Mismatches: 24, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
157 6 0.05
158 118 0.95
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (158 bp):
TCCCTCGGTCTGACTGGGGCTTAGACTAGGAATAAACTCTATATGCCTAAGTCAACCCACAAAAC
AAACGTGCAGGGGCTGAACCGACCAGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCT
CTTTAGGTGATGTCGATCCTACTGCAGG
Found at i:216729 original size:157 final size:156
Alignment explanation
Indices: 216437--216778 Score: 384
Period size: 156 Copynumber: 2.2 Consensus size: 156
216427 CGTAAGCTAG
* * *
216437 GGATCGACCCGGTCCCC-CTCGGGTGGGCTACAGATCCTGCTGTAGGTCTCTCGATCCGACTGGG
1 GGATCGACCCGATCCCCTCT-GCGT--GCTACAGATCCTACTGTAGGTCTCTCGATCCGACTGGG
* *
216501 GCTTAGACTAAGAATGAACTCCATATCCCTAAGTCAACCCATGAAATGAGCATGCGGACACTGAA
63 GCTTAGACTAAGAATGAACTCCATATCCCTAAGTCAACCCACGAAACGAGCATGCGGACACTGAA
* * *
216566 CTGGCCAGAGAGGCAAAATGAGCAAGCCAA
128 CAGGCCAAAGAGG-AAAACGAGCAAGCCAA
* * * * *
216596 GGATCGACCCGATCCCCTCTGCGTGCTACCGATCCTACTGTGGGTC-CTCGGTCTGACTGGTGCT
1 GGATCGACCCGATCCCCTCTGCGTGCTACAGATCCTACTGTAGGTCTCTCGATCCGACTGGGGCT
* * * * * * *
216660 TAGATTGAGAAT-AACTCCATATGCCTAAGTTAACACACACGAAACGAGCGTGTGGACACTGAGC
66 TAGACTAAGAATGAACTCCATATCCCTAAGTCAAC-C-CACGAAACGAGCATGCGGACACTGAAC
* * * * *
216724 AGGCCAAAGAGGTAGACGCGTAAGCCGA
129 AGGCCAAAGAGGAAAACGAGCAAGCCAA
216752 GGATCGACCCGATCCCCTCTGCGTGCT
1 GGATCGACCCGATCCCCTCTGCGTGCT
216779 GTAGGTCTTG
Statistics
Matches: 155, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
155 20 0.13
156 63 0.41
157 51 0.33
159 19 0.12
160 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (156 bp):
GGATCGACCCGATCCCCTCTGCGTGCTACAGATCCTACTGTAGGTCTCTCGATCCGACTGGGGCT
TAGACTAAGAATGAACTCCATATCCCTAAGTCAACCCACGAAACGAGCATGCGGACACTGAACAG
GCCAAAGAGGAAAACGAGCAAGCCAA
Found at i:216757 original size:156 final size:156
Alignment explanation
Indices: 216353--216778 Score: 417
Period size: 159 Copynumber: 2.7 Consensus size: 156
216343 TCAAGACTGG
* * * * * * * ** *
216353 GAATGCACTACATATGCCTAAGTCAACCTATGAAACAAGCGTGCGGGTACTGAGCCGGCCAAAGA
1 GAATGAACTCCATATCCCTAAGTCAACCCACGAAACGAGCATGCGGACACTGAGCAGGCCAAAGA
* * * * * * *
216418 GCTAGAATTCGTAAGCTAGGGATCGACCCGGTCCCC-CTCGGGTGGGCTACAGATCCTGCTGTAG
66 GGTAG-ATGCGTAAGCCAAGGATCGACCCGATCCCCTCT-GCGT--GCTACAGATCCTACTGTAG
216482 GTCTCTCGATCCGACTGGGGCTTAGACTAA
127 GTCTCTCGATCCGACTGGGGCTTAGACTAA
* * * * *
216512 GAATGAACTCCATATCCCTAAGTCAACCCATGAAATGAGCATGCGGACACTGAACTGGCCAGAGA
1 GAATGAACTCCATATCCCTAAGTCAACCCACGAAACGAGCATGCGGACACTGAGCAGGCCAAAGA
* * * * * *
216577 GGCAAAATGAGCAAGCCAAGGATCGACCCGATCCCCTCTGCGTGCTACCGATCCTACTGTGGGTC
66 GG-TAGATGCGTAAGCCAAGGATCGACCCGATCCCCTCTGCGTGCTACAGATCCTACTGTAGGTC
* * * * *
216642 -CTCGGTCTGACTGGTGCTTAGATTGA
130 TCTCGATCCGACTGGGGCTTAGACTAA
* * * *
216668 GAAT-AACTCCATATGCCTAAGTTAACACACACGAAACGAGCGTGTGGACACTGAGCAGGCCAAA
1 GAATGAACTCCATATCCCTAAGTCAAC-C-CACGAAACGAGCATGCGGACACTGAGCAGGCCAAA
* *
216732 GAGGTAGACGCGTAAGCCGAGGATCGACCCGATCCCCTCTGCGTGCT
64 GAGGTAGATGCGTAAGCCAAGGATCGACCCGATCCCCTCTGCGTGCT
216779 GTAGGTCTTG
Statistics
Matches: 218, Mismatches: 45, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
155 20 0.09
156 63 0.29
157 51 0.23
159 81 0.37
160 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.26, T:0.19
Consensus pattern (156 bp):
GAATGAACTCCATATCCCTAAGTCAACCCACGAAACGAGCATGCGGACACTGAGCAGGCCAAAGA
GGTAGATGCGTAAGCCAAGGATCGACCCGATCCCCTCTGCGTGCTACAGATCCTACTGTAGGTCT
CTCGATCCGACTGGGGCTTAGACTAA
Found at i:216840 original size:19 final size:19
Alignment explanation
Indices: 216816--216852 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
216806 TCTGATCCGA
*
216816 GCTTAGACTGGGAATGAAT
1 GCTTAGACTAGGAATGAAT
216835 GCTTAGACTAGGAATGAA
1 GCTTAGACTAGGAATGAA
216853 CTCCGTATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.11, G:0.30, T:0.24
Consensus pattern (19 bp):
GCTTAGACTAGGAATGAAT
Found at i:217533 original size:149 final size:150
Alignment explanation
Indices: 217214--217534 Score: 383
Period size: 149 Copynumber: 2.1 Consensus size: 150
217204 TGCCAAAGCC
** * * * * ** *
217214 ATTTTTATGGCCCATGAATTCATATGAGCCCTCCCCAATGCCCACGCACCACGTGCGGGTGTCTT
1 ATTTTTATGGCCTGTAAATTCACATGAGCACTCCCCAATGCCCACACACCACACGCGGGTGTCCT
* * * * *
217279 GAGCCTGGGCCGAGCACCAATACGCGCCACGATTGAGTGGTAGGTGGGTTTAGGCACATCTTCAT
66 GAGCCCGAGCCGAGCACCAATACACGCCACAATCGAGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * *
217344 ATTTTTGCCATGCCAATACC
131 ATATCTACCATGCCAATACA
* * * *
217364 ATTTTTATGGCCTGTGAATTCACATGAGCACTCCCCAGTGCCCGCACACCACACGTGGGTGTCCT
1 ATTTTTATGGCCTGTAAATTCACATGAGCACTCCCCAATGCCCACACACCACACGCGGGTGTCCT
* * *
217429 GAGCCCGAGCCGAGCACC-ATGCATGCCACAATCGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
66 GAGCCCGAGCCGAGCACCAATACACGCCACAATCGAGTGGTAGGTGGGTTTAGGCACATCTTCAT
**
217493 ATATCTACCATGCCAATGTA
131 ATATCTACCATGCCAATACA
*
217513 ATTTTTATGGCTTGTAAATTCA
1 ATTTTTATGGCCTGTAAATTCA
217535 TACAATGGTT
Statistics
Matches: 144, Mismatches: 27, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
149 74 0.51
150 70 0.49
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.27
Consensus pattern (150 bp):
ATTTTTATGGCCTGTAAATTCACATGAGCACTCCCCAATGCCCACACACCACACGCGGGTGTCCT
GAGCCCGAGCCGAGCACCAATACACGCCACAATCGAGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATATCTACCATGCCAATACA
Found at i:218593 original size:45 final size:45
Alignment explanation
Indices: 218418--218607 Score: 161
Period size: 45 Copynumber: 4.2 Consensus size: 45
218408 CTGGTCCATG
*
218418 CGGTTGCCTCAAACACCATCGGCACATGCTAGGCCTTGGTGCGAGA
1 CGGTTGCCTCAAACACCATCGGCACAAGCTAGGCCTTGGTGCG-GA
* * * * * * *
218464 -GGTTACCTCGAGCACCATCGGTACAAG-TTGACCCTTGGTGCGGG
1 CGGTTGCCTCAAACACCATCGGCACAAGCTAG-GCCTTGGTGCGGA
** * * * *
218508 CACTTGCCTCAACCACCATCGGCAGAAGAT-GGCCCCTGGTGCGGA
1 CGGTTGCCTCAAACACCATCGGCACAAGCTAGG-CCTTGGTGCGGA
* * * *
218553 CGGTTGCCTCAAACACCATTGGGACATGCTAGGCCTTGGTGCGGG
1 CGGTTGCCTCAAACACCATCGGCACAAGCTAGGCCTTGGTGCGGA
*
218598 TGGTTGCCTC
1 CGGTTGCCTC
218608 GAATAGCATC
Statistics
Matches: 110, Mismatches: 29, Indels: 11
0.73 0.19 0.07
Matches are distributed among these distances:
44 3 0.03
45 104 0.95
46 3 0.03
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (45 bp):
CGGTTGCCTCAAACACCATCGGCACAAGCTAGGCCTTGGTGCGGA
Found at i:218795 original size:45 final size:45
Alignment explanation
Indices: 218741--218910 Score: 162
Period size: 45 Copynumber: 3.8 Consensus size: 45
218731 GACAGTTATG
*
218741 TTGAACACCATCGACACGTGCTGGGCGTTGGTGCGGGCGGTTGCC
1 TTGAACACCATCGACACGTGCTGGGCCTTGGTGCGGGCGGTTGCC
* * * * * * * ***
218786 TCGATCACCATCGATA-GAAGATGGCCCCTGGTATAGGCGGTTGCC
1 TTGAACACCATCGACACG-TGCTGGGCCTTGGTGCGGGCGGTTGCC
** * ** *
218831 TTGAACACCATCGGTACATGCTGGGCCTTGGTGCGGGTAGTTACC
1 TTGAACACCATCGACACGTGCTGGGCCTTGGTGCGGGCGGTTGCC
*
218876 TTGAACACCATCGGCACGTGCTGGGCCTTGGTGCG
1 TTGAACACCATCGACACGTGCTGGGCCTTGGTGCG
218911 AGCACATGCC
Statistics
Matches: 96, Mismatches: 27, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
44 1 0.01
45 95 0.99
ACGTcount: A:0.17, C:0.26, G:0.33, T:0.24
Consensus pattern (45 bp):
TTGAACACCATCGACACGTGCTGGGCCTTGGTGCGGGCGGTTGCC
Found at i:218813 original size:90 final size:90
Alignment explanation
Indices: 218701--218867 Score: 210
Period size: 90 Copynumber: 1.9 Consensus size: 90
218691 TTTCCTTGAC
* * ** *
218701 CACCATCGGTAAAAGATAGCCCCTGGTGT-GGACAGTTATGTTGAACACCATCGACACGTGCTGG
1 CACCATCGATAAAAGATAGCCCCTGGTATAGG-CAGTTACCTTGAACACCATCGACACATGCTGG
*
218765 GCGTTGGTGCGGGCGGTTGCCTCGAT
65 GCCTTGGTGCGGGCGGTTGCCTCGAT
* * * * **
218791 CACCATCGATAGAAGATGGCCCCTGGTATAGGCGGTTGCCTTGAACACCATCGGTACATGCTGGG
1 CACCATCGATAAAAGATAGCCCCTGGTATAGGCAGTTACCTTGAACACCATCGACACATGCTGGG
218856 CCTTGGTGCGGG
66 CCTTGGTGCGGG
218868 TAGTTACCTT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
90 62 0.97
91 2 0.03
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (90 bp):
CACCATCGATAAAAGATAGCCCCTGGTATAGGCAGTTACCTTGAACACCATCGACACATGCTGGG
CCTTGGTGCGGGCGGTTGCCTCGAT
Found at i:218921 original size:135 final size:134
Alignment explanation
Indices: 218417--218924 Score: 428
Period size: 135 Copynumber: 3.8 Consensus size: 134
218407 CCTGGTCCAT
* * *
218417 GCGGTTGCCTCAAACACCATCGGCACATGCTAGGCCTTGGTGCGAG-AGGTTACCTCGAGCACCA
1 GCGGTTGCCTCAAACACCATCGGTACATGCTAGGCCTTGGTGCGGGTA-GTTACCTCGAACACCA
* ** * ** * * * *
218481 TCGGTACAAGTTGACCCTTGGTGCGGGCACTTGCCTCAACCACCATCGGCAGAAGATGGCCCCTG
65 TCGGCACGTGCTGGGCCTTGGTGCGAGCACATGCCTCGACCACCATCGACAGAAGATGGCCCCTG
**
218546 GTGCG
130 GTAAG
* * * * * *
218551 GACGGTTGCCTCAAACACCATTGGGACATGCTAGGCCTTGGTGCGGGTGGTTGCCTCGAATAGCA
1 G-CGGTTGCCTCAAACACCATCGGTACATGCTAGGCCTTGGTGCGGGTAGTTACCTCGAACACCA
** * * * *
218616 TCGGTGCGTGCTGGGCCTTGGTGCTGA-CACATGCCCCGACCACCATCGGCACAAG-TCGGCCCT
65 TCGGCACGTGCTGGGCCTTGGTGC-GAGCACATGCCTCGACCACCATCGACAGAAGAT-GGCCCC
*
218679 TGGTACG
128 TGGTAAG
** * ** * * * * * * * ** ** *
218686 AGCACTTTCCTTGACCACCATCGGTAAAAGATAGCCCCTGGTGTGGACAGTTATGTTGAACACCA
1 -GCGGTTGCCTCAAACACCATCGGTACATGCTAGGCCTTGGTGCGGGTAGTTACCTCGAACACCA
* * * *** * *
218751 TCGACACGTGCTGGGCGTTGGTGCGGGCGGTTGCCTCGATCACCATCGATAGAAGATGGCCCCTG
65 TCGGCACGTGCTGGGCCTTGGTGCGAGCACATGCCTCGACCACCATCGACAGAAGATGGCCCCTG
218816 GTATAG
130 GTA-AG
** * *
218822 GCGGTTGCCTTGAACACCATCGGTACATGCTGGGCCTTGGTGCGGGTAGTTACCTTGAACACCAT
1 GCGGTTGCCTCAAACACCATCGGTACATGCTAGGCCTTGGTGCGGGTAGTTACCTCGAACACCAT
218887 CGGCACGTGCTGGGCCTTGGTGCGAGCACATGCCTCGA
66 CGGCACGTGCTGGGCCTTGGTGCGAGCACATGCCTCGA
218925 GCTGGTGTGG
Statistics
Matches: 286, Mismatches: 80, Indels: 15
0.75 0.21 0.04
Matches are distributed among these distances:
134 3 0.01
135 279 0.98
136 4 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (134 bp):
GCGGTTGCCTCAAACACCATCGGTACATGCTAGGCCTTGGTGCGGGTAGTTACCTCGAACACCAT
CGGCACGTGCTGGGCCTTGGTGCGAGCACATGCCTCGACCACCATCGACAGAAGATGGCCCCTGG
TAAG
Found at i:232587 original size:26 final size:26
Alignment explanation
Indices: 232558--232611 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
232548 TCCAGTCCGA
**
232558 GCTTAGACTAGGAATAAACTCCATAT
1 GCTTAGACTAAAAATAAACTCCATAT
* *
232584 GCTTAGACTAAAAATGAACTCTATAT
1 GCTTAGACTAAAAATAAACTCCATAT
232610 GC
1 GC
232612 CTAGGTCAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.28
Consensus pattern (26 bp):
GCTTAGACTAAAAATAAACTCCATAT
Found at i:234783 original size:45 final size:45
Alignment explanation
Indices: 234734--234885 Score: 146
Period size: 45 Copynumber: 3.4 Consensus size: 45
234724 TGCATACAGA
* * * *
234734 TGCCTCGAACACCATCGACACATGCTGGGCCTTGGTGCGAGC-ACT
1 TGCCTCGAACACCATCGACACAAGATGGGCCCTGGTACGAGCGA-T
* * *
234779 TGCCTTGATCACCATCGACAGAAGAT-GGCACCTGGTACGAGCGAT
1 TGCCTCGAACACCATCGACACAAGATGGGC-CCTGGTACGAGCGAT
* * * * * *
234824 TACCTCGATCACCATCGATAGAAGATGGTCCCTGGTACGGGCGAT
1 TGCCTCGAACACCATCGACACAAGATGGGCCCTGGTACGAGCGAT
*
234869 TACCTCGAACACCATCG
1 TGCCTCGAACACCATCG
234886 GCATGTGCTG
Statistics
Matches: 91, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
44 3 0.03
45 85 0.93
46 3 0.03
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.20
Consensus pattern (45 bp):
TGCCTCGAACACCATCGACACAAGATGGGCCCTGGTACGAGCGAT
Found at i:242412 original size:45 final size:45
Alignment explanation
Indices: 242332--242436 Score: 113
Period size: 45 Copynumber: 2.3 Consensus size: 45
242322 TGCAGGCGGT
* ** * * *
242332 TGCCTCGAGCACCATCGACACGTGTTAGGCCTTGGTGCGGGCACA
1 TGCCTCGACCACCATCGACACAAGCTAGGCCTTGGTACAGGCACA
* *
242377 TGCCTCGACCACCATCGTCACAAGCT-GGCCATTGGTACAGGCACT
1 TGCCTCGACCACCATCGACACAAGCTAGGCC-TTGGTACAGGCACA
*
242422 TGCCTGGACCACCAT
1 TGCCTCGACCACCAT
242437 TGGAATATGC
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 4 0.08
45 46 0.92
ACGTcount: A:0.20, C:0.34, G:0.26, T:0.20
Consensus pattern (45 bp):
TGCCTCGACCACCATCGACACAAGCTAGGCCTTGGTACAGGCACA
Found at i:242495 original size:162 final size:161
Alignment explanation
Indices: 242258--242555 Score: 395
Period size: 162 Copynumber: 1.8 Consensus size: 161
242248 AGTCGGAGGT
* * * *
242258 ACTTGCCTCGAGCACCATCGACATATGCATGCCTCGATGAGCATCGGTAGAAGATGGCCCTTGGT
1 ACTTGCCTCGACCACCATCGACATATGCATGCCTCGATAAGCATCGATAGAAGATGGCCCTTGCT
* * * * * *
242323 GCAGGCGGTTGCCTCGAGCACCATCGACACGTGTTAGGCCTTGGTGCGGGCACATGCCTCGACCA
66 ACAGGCGGTTGCCTCGAACACCATCGACACATGCTAGGCCTTAGTACGGGCACATGCCTCGACCA
242388 CCATCGTCACAAGCTGGCCATTGGTACAGGC
131 CCATCGTCACAAGCTGGCCATTGGTACAGGC
* * *
242419 ACTTGCCTGGACCACCATTGGA-ATATGCCATGCCTTGATAAGCATCGATAGAAGATGGTCCC-T
1 ACTTGCCTCGACCACCA-TCGACATATG-CATGCCTCGATAAGCATCGATAGAAGATGG-CCCTT
* * *
242482 GCTAC-GTGCGGTTGCCTCGAACACCATCGACACATGCTGGGCCTTAGTACGGGCAGATGCCTTG
63 GCTACAG-GCGGTTGCCTCGAACACCATCGACACATGCTAGGCCTTAGTACGGGCACATGCCTCG
242546 ACCACCATCG
127 ACCACCATCG
242556 ATGCATGCAT
Statistics
Matches: 117, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
161 21 0.18
162 93 0.79
163 3 0.03
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (161 bp):
ACTTGCCTCGACCACCATCGACATATGCATGCCTCGATAAGCATCGATAGAAGATGGCCCTTGCT
ACAGGCGGTTGCCTCGAACACCATCGACACATGCTAGGCCTTAGTACGGGCACATGCCTCGACCA
CCATCGTCACAAGCTGGCCATTGGTACAGGC
Found at i:251220 original size:149 final size:150
Alignment explanation
Indices: 250914--251226 Score: 403
Period size: 150 Copynumber: 2.1 Consensus size: 150
250904 GTATGCTGAA
* * ** * *
250914 GCCATTTTTATGGCCCATGAATTCATATGAGCCCTCCCCAATGCTCGCACACCACGCGCAGGTGT
1 GCCATTTTTATGGCCCATGAATTCACATGAGCACTCCCCAACACCCGCACACCACGCACAGGTGT
* * *
250979 CTTAAGCCCAGACCGAGCACCAATGCACGCCATGACCGGGTGGTAGGTGGGTTTAGGCACATCTT
66 CTTAAGCCCAGACCGAGCACCAATGCACGCCATGACCAGGCGATAGGTGGGTTTAGGCACATCTT
251044 CATATTTCTACCATGCCAAT
131 CATATTTCTACCATGCCAAT
* ** * * * *
251064 ACCATTTTTATGGCCTGTGAATTCACATGAGCACTCCCTAGCACCCGCACACCATGCACGGGTGT
1 GCCATTTTTATGGCCCATGAATTCACATGAGCACTCCCCAACACCCGCACACCACGCACAGGTGT
* * * * * * *
251129 CTTGAGCCTAGACCGAGTACC-ATGCATGCCATGATCAGGCGATAGGTGGTTTTAGGTACATCTT
66 CTTAAGCCCAGACCGAGCACCAATGCACGCCATGACCAGGCGATAGGTGGGTTTAGGCACATCTT
*
251193 CATATTTCTGCCATGCCAAT
131 CATATTTCTACCATGCCAAT
251213 GCCATTTTTATGGC
1 GCCATTTTTATGGC
251227 TTGTAAAGTC
Statistics
Matches: 138, Mismatches: 25, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
149 68 0.49
150 70 0.51
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.27
Consensus pattern (150 bp):
GCCATTTTTATGGCCCATGAATTCACATGAGCACTCCCCAACACCCGCACACCACGCACAGGTGT
CTTAAGCCCAGACCGAGCACCAATGCACGCCATGACCAGGCGATAGGTGGGTTTAGGCACATCTT
CATATTTCTACCATGCCAAT
Found at i:251252 original size:149 final size:150
Alignment explanation
Indices: 250959--251233 Score: 390
Period size: 149 Copynumber: 1.8 Consensus size: 150
250949 CCCCAATGCT
* * * *
250959 CGCACACCACGCGCAGGTGTCTTAAGCCCAGACCGAGCACCAATGCACGCCATGACCGGGTGGTA
1 CGCACACCACGCACAGGTGTCTTAAGCCCAGACCGAGCACCAATGCACGCCATGACCAGGCGATA
*
251024 GGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATACCATTTTTATGGCCTGTGAATTCA
66 GGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATACCATTTTTATGGCCTGTAAATTCA
251089 CATGAGCACTCCCTAGCACC
131 CATGAGCACTCCCTAGCACC
* * * * * * *
251109 CGCACACCATGCACGGGTGTCTTGAGCCTAGACCGAGTACC-ATGCATGCCATGATCAGGCGATA
1 CGCACACCACGCACAGGTGTCTTAAGCCCAGACCGAGCACCAATGCACGCCATGACCAGGCGATA
* * * * *
251173 GGTGGTTTTAGGTACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAA
66 GGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATACCATTTTTATGGCCTGTAAA
251234 GTCTTACAAT
Statistics
Matches: 108, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
149 73 0.68
150 35 0.32
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (150 bp):
CGCACACCACGCACAGGTGTCTTAAGCCCAGACCGAGCACCAATGCACGCCATGACCAGGCGATA
GGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATACCATTTTTATGGCCTGTAAATTCA
CATGAGCACTCCCTAGCACC
Found at i:251896 original size:46 final size:45
Alignment explanation
Indices: 251809--251901 Score: 107
Period size: 46 Copynumber: 2.0 Consensus size: 45
251799 GTATGGTGAT
** *
251809 GGCACATGCATCGACCATGATCGGCACGGGCTGCCCTTTGGTAACA
1 GGCACATGCATCGACCACCATCGGCACGAGCTGCCCTTTGGT-ACA
* * *
251855 GGCACTTGCCTCGACCACCATCGGCACTAGCTGGCCC-TTGGTACA
1 GGCACATGCATCGACCACCATCGGCACGAGCT-GCCCTTTGGTACA
251900 GG
1 GG
251902 TGTCACACCC
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
45 5 0.12
46 31 0.77
47 4 0.10
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.19
Consensus pattern (45 bp):
GGCACATGCATCGACCACCATCGGCACGAGCTGCCCTTTGGTACA
Found at i:257966 original size:14 final size:14
Alignment explanation
Indices: 257947--257979 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
257937 CCGGTCAGAG
*
257947 AGCTAAGATGTGCA
1 AGCTAAGATATGCA
257961 AGCTAAGATATGCA
1 AGCTAAGATATGCA
257975 AGCTA
1 AGCTA
257980 TGGATCGACC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.21
Consensus pattern (14 bp):
AGCTAAGATATGCA
Found at i:258250 original size:26 final size:26
Alignment explanation
Indices: 258214--258267 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
258204 TCCGGTCTGA
*
258214 GCTTAGACTGGGAATGAACT-TCATAT
1 GCTTAAACTGGGAATGAACTCT-ATAT
258240 GCTTAAACTGGGAATGAACTCTATAT
1 GCTTAAACTGGGAATGAACTCTATAT
258266 GC
1 GC
258268 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (26 bp):
GCTTAAACTGGGAATGAACTCTATAT
Found at i:259591 original size:45 final size:45
Alignment explanation
Indices: 259507--259616 Score: 123
Period size: 45 Copynumber: 2.4 Consensus size: 45
259497 GGCACATGCA
* * * * *
259507 TCGACCATCATCGGCACAGGTTGCCCTTTGGTACGGGCACTTACC
1 TCGACCACCATCGGCACATGTTGACCTTTAGTACAGGCACTTACC
* *
259552 TCGACCGCCATCGGCACATGTTGGACC-TTAGTACAGGCACTTGCC
1 TCGACCACCATCGGCACATGTT-GACCTTTAGTACAGGCACTTACC
* *
259597 TTGACCACCATCGACACATG
1 TCGACCACCATCGGCACATG
259617 CATGCCCTGA
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
45 51 0.94
46 3 0.06
ACGTcount: A:0.21, C:0.34, G:0.23, T:0.23
Consensus pattern (45 bp):
TCGACCACCATCGGCACATGTTGACCTTTAGTACAGGCACTTACC
Found at i:261310 original size:16 final size:16
Alignment explanation
Indices: 261289--261320 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
261279 GCACTCCTTG
*
261289 GTTGTTGGGATGAAGA
1 GTTGTTGGAATGAAGA
261305 GTTGTTGGAATGAAGA
1 GTTGTTGGAATGAAGA
261321 TTCCATACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.41, T:0.31
Consensus pattern (16 bp):
GTTGTTGGAATGAAGA
Found at i:280303 original size:19 final size:19
Alignment explanation
Indices: 280279--280322 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
280269 AAGGTAGCCA
*
280279 AATGACTCGTCATCTAATT
1 AATGACTCATCATCTAATT
280298 AATGACTCATCATCTAATT
1 AATGACTCATCATCTAATT
*
280317 AGTGAC
1 AATGAC
280323 GCGCATGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (19 bp):
AATGACTCATCATCTAATT
Found at i:282085 original size:158 final size:158
Alignment explanation
Indices: 281795--282094 Score: 361
Period size: 158 Copynumber: 1.9 Consensus size: 158
281785 ATCCTACTGC
* * * * * * * *
281795 GGGTCTCTCGGTCTGACTGGGGGTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
1 GGGTCCCTCGATCCGACTGGGGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGA
** * * ** *
281860 AACGAGCGTACGGGCACTGAGCTGGCTAGAGAGGTAAGATGCGTAAGCCGAGGATCAGCTTAGTC
66 AACGAGCGTACGGGCACTGAGCCAGCCAGAGAGGTAAGATGCGCAAGCCGAGGATCAGCCCAATC
281925 CCCCTCTGTGTGTTGCGGATCCTTCTAG
131 CCCCTCTGTGTGTTGCGGATCCTTCTAG
*
281953 GGGTCCCTCGATCCGACTGGGGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAATCCACGA
1 GGGTCCCTCGATCCGACTGGGGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGA
** * * * *
282018 AACGAGCGTGGGGGCACTGAGCCAGCCAGAGAGGT-AGAATGTGCAAGCTGAGTAT-TGACCCAA
66 AACGAGCGTACGGGCACTGAGCCAGCCAGAGAGGTAAG-ATGCGCAAGCCGAGGATCAG-CCCAA
*
282081 TCCCCTTCTGTGTG
129 TCCCCCTCTGTGTG
282095 CTGTCGATCT
Statistics
Matches: 117, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
157 3 0.03
158 114 0.97
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.22
Consensus pattern (158 bp):
GGGTCCCTCGATCCGACTGGGGCTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGA
AACGAGCGTACGGGCACTGAGCCAGCCAGAGAGGTAAGATGCGCAAGCCGAGGATCAGCCCAATC
CCCCTCTGTGTGTTGCGGATCCTTCTAG
Found at i:282814 original size:149 final size:150
Alignment explanation
Indices: 282523--282816 Score: 387
Period size: 149 Copynumber: 2.0 Consensus size: 150
282513 TTGTGGCCCA
* * * **
282523 TGAATTCATATGAGCCCTCCCCAACGCCCATGCACCACGCGCAGGTGTCTTGAGCCCGGACCGAG
1 TGAATTCACATGAGCACTCCCCAACACCCACACACCACGCGCAGGTGTCTTGAGCCCGGACCGAG
*
282588 CACCAATGCTCGCCACGATCGAGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCC
66 CACCAATGCTCGCCACGATCGACTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCC
282653 AATACCATTTTTATGACCTG
131 AATACCATTTTTATGACCTG
* * * * **
282673 TGAATTCACATGAGCACTCCCCAGCACCCGCACACCACTCGCGGGTGTCTTGAGCCCGGGTCGAG
1 TGAATTCACATGAGCACTCCCCAACACCCACACACCACGCGCAGGTGTCTTGAGCCCGGACCGAG
* * * **
282738 CACC-ATGCGT-GCCACGATCTG-CTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTGCTTTG
66 CACCAATGC-TCGCCACGATC-GACTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATG
*
282800 CCACTACCATTTTTATG
129 CCAATACCATTTTTATG
282817 GCTTTTAAAT
Statistics
Matches: 124, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
149 64 0.52
150 60 0.48
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (150 bp):
TGAATTCACATGAGCACTCCCCAACACCCACACACCACGCGCAGGTGTCTTGAGCCCGGACCGAG
CACCAATGCTCGCCACGATCGACTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCC
AATACCATTTTTATGACCTG
Found at i:284002 original size:91 final size:90
Alignment explanation
Indices: 283841--284013 Score: 213
Period size: 91 Copynumber: 1.9 Consensus size: 90
283831 GCATCGATAG
* * * * *
283841 AAGATGGCCCCTGGTGAGGGCAATTGCATCGAACACCATCGGTACATGCTGGGCCTTGGTATAGG
1 AAGATGGCCCCTGGTGAGAGCAATTGCATAGAACACCATCGGCACATGCTGGACCTTGGTACAGG
* *
283906 TGGTTGCCTCGATCACCGTCGGTAA
66 CGGTTGCCTCGAACACCGTCGGTAA
* * * *
283931 AAGATGGCCCTTGGT-ACGAGCAAATTGCCTAGAACACCATCGGCACATGCTGGACCTTGGTGCG
1 AAGATGGCCCCTGGTGA-GAGC-AATTGCATAGAACACCATCGGCACATGCTGGACCTTGGTACA
*
283995 GGCGGTTGCTTCGAACACC
64 GGCGGTTGCCTCGAACACC
284014 ATTGACATGT
Statistics
Matches: 69, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
89 1 0.01
90 17 0.25
91 51 0.74
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (90 bp):
AAGATGGCCCCTGGTGAGAGCAATTGCATAGAACACCATCGGCACATGCTGGACCTTGGTACAGG
CGGTTGCCTCGAACACCGTCGGTAA
Found at i:284292 original size:90 final size:90
Alignment explanation
Indices: 284182--284377 Score: 230
Period size: 90 Copynumber: 2.2 Consensus size: 90
284172 TAGGCCGTTA
* * **
284182 CCTCGATCACTATCGGTAGAAGATAGCCCCTGGTACGGGCGATTGCCTTGAACACCATCAGCACA
1 CCTCGATCACTATCGATAGAAAATAGCCCCTGGTACGAACGATTGCCTTGAACACCATCAGCACA
** *
284247 TGTTGGGCCTCGGTGCAGGTGATTG
66 TACTGGGCCTCGGTGCAGGCGATTG
* * ** * *
284272 CCTCGATCACTATCGATAGAAAATGGCCCCTGTTGTGAACGATTGCCTTGAACACCATCGGTACA
1 CCTCGATCACTATCGATAGAAAATAGCCCCTGGTACGAACGATTGCCTTGAACACCATCAGCACA
* * *
284337 TACTGGGCCTTGGTGCGGGCGGTTG
66 TACTGGGCCTCGGTGCAGGCGATTG
* *
284362 CCTCGAACACCATCGA
1 CCTCGATCACTATCGA
284378 CACGTGCTGG
Statistics
Matches: 88, Mismatches: 18, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
90 88 1.00
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (90 bp):
CCTCGATCACTATCGATAGAAAATAGCCCCTGGTACGAACGATTGCCTTGAACACCATCAGCACA
TACTGGGCCTCGGTGCAGGCGATTG
Found at i:284363 original size:45 final size:45
Alignment explanation
Indices: 284314--284401 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 45
284304 TTGTGAACGA
* **
284314 TTGCCTTGAACACCATCGGTACATACTGGGCCTTGGTGCGGGCGG
1 TTGCCTCGAACACCATCGACACATACTGGGCCTTGGTGCGGGCGG
* *
284359 TTGCCTCGAACACCATCGACACGTGCTGGGCCTTGGTGCGGGC
1 TTGCCTCGAACACCATCGACACATACTGGGCCTTGGTGCGGGC
284402 ACATGCCTCG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.23
Consensus pattern (45 bp):
TTGCCTCGAACACCATCGACACATACTGGGCCTTGGTGCGGGCGG
Found at i:284409 original size:45 final size:45
Alignment explanation
Indices: 284315--284411 Score: 122
Period size: 45 Copynumber: 2.2 Consensus size: 45
284305 TGTGAACGAT
* ** ***
284315 TGCCTTGAACACCATCGGTACATACTGGGCCTTGGTGCGGGCGGT
1 TGCCTCGAACACCATCGACACATACTGGGCCTTGGTGCGGGCACA
* *
284360 TGCCTCGAACACCATCGACACGTGCTGGGCCTTGGTGCGGGCACA
1 TGCCTCGAACACCATCGACACATACTGGGCCTTGGTGCGGGCACA
284405 TGCCTCG
1 TGCCTCG
284412 GGCTGGTGTG
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.15, C:0.31, G:0.32, T:0.22
Consensus pattern (45 bp):
TGCCTCGAACACCATCGACACATACTGGGCCTTGGTGCGGGCACA
Found at i:284441 original size:68 final size:68
Alignment explanation
Indices: 284347--284479 Score: 196
Period size: 68 Copynumber: 2.0 Consensus size: 68
284337 TACTGGGCCT
* *
284347 TGGTGCGGGCGGTTGCCTCGAACACCATCGACACGTGCTGGGCCTTGGTGCGGGCACATGCCTCG
1 TGGTGCGGGCGGTTACCTCGAACACCATCGACACGTGCTGGGCCTTGGTACGGGCACATGCCTCG
284412 GGC
66 GGC
* * * *
284415 TGGTGTGGGCGGTTACCTC-AACCACCATCGGCACGTGCTGGGCCTTGGTATGGGCACATTCCTC
1 TGGTGCGGGCGGTTACCTCGAA-CACCATCGACACGTGCTGGGCCTTGGTACGGGCACATGCCTC
284479 G
65 G
284480 ACCACCATCG
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
67 2 0.03
68 56 0.97
ACGTcount: A:0.13, C:0.30, G:0.35, T:0.22
Consensus pattern (68 bp):
TGGTGCGGGCGGTTACCTCGAACACCATCGACACGTGCTGGGCCTTGGTACGGGCACATGCCTCG
GGC
Found at i:284738 original size:44 final size:44
Alignment explanation
Indices: 284685--284770 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 44
284675 CGATAGAAGA
*
284685 TGGCCCTTGGTGCAGGCA-ATCGCATCAAACACCATCGGCACCAC
1 TGGCCCTTGGTACAGGCACAT-GCATCAAACACCATCGGCACCAC
* * * *
284729 TGGCCCTTGGTACAGGTACATGCCTCGACCACCATCGGCACC
1 TGGCCCTTGGTACAGGCACATGCATCAAACACCATCGGCACC
284771 TATTCACCCT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
44 34 0.94
45 2 0.06
ACGTcount: A:0.22, C:0.37, G:0.23, T:0.17
Consensus pattern (44 bp):
TGGCCCTTGGTACAGGCACATGCATCAAACACCATCGGCACCAC
Found at i:323857 original size:26 final size:27
Alignment explanation
Indices: 323799--323857 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
323789 AAAACTTCTA
* **
323799 AAAAAATTTTCAAAAAATCTTGAATTAT
1 AAAAAATTTT-AAAAAATCATGAAAAAT
*
323827 GAAAAATTTT-AAAAATCATGAAAAAT
1 AAAAAATTTTAAAAAATCATGAAAAAT
323853 AAAAA
1 AAAAA
323858 GCAAGTCATC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 17 0.65
28 9 0.35
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCATGAAAAAT
Found at i:324132 original size:22 final size:22
Alignment explanation
Indices: 324084--324135 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
324074 ACTAGGGGCT
* *
324084 AGCATGTGCCGATGGTAGTCGA
1 AGCATGTGACGATGGTAGTCAA
*
324106 CGCATGTGACGATGGT-GTTCAA
1 AGCATGTGACGATGGTAG-TCAA
324128 AGCATGTG
1 AGCATGTG
324136 TCGAGACCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.23, C:0.17, G:0.35, T:0.25
Consensus pattern (22 bp):
AGCATGTGACGATGGTAGTCAA
Found at i:326653 original size:123 final size:122
Alignment explanation
Indices: 326430--326673 Score: 434
Period size: 123 Copynumber: 2.0 Consensus size: 122
326420 CATTGGCAAA
*
326430 GTAGAAATATAAAGATGTGCCTGAACCTACCTATTACCTGATCATGGTACGCATAGTGCATGGTT
1 GTAGAAATATAAAGATGTACCTGAACCTACCTATTACCTGATCATGGTACGCATAGTGCATGGTT
326495 CGAGCCTAGGATGCCTATGCTTGATGCACATTCTAGCATGTGCCAATGGTGTTCAAG
66 CGAGCCTAGGATGCCTATGCTTGATGCACATTCTAGCATGTGCCAATGGTGTTCAAG
* **
326552 GTAGCAAATATGAAGATGTACCTGAACCTACCTATTACCTGATCATGGTGTGCATAGTGCATGGT
1 GTAG-AAATATAAAGATGTACCTGAACCTACCTATTACCTGATCATGGTACGCATAGTGCATGGT
*
326617 TCGAGCCTATGATGCCTATGCTTGATGCACATTCTAGCATGTGCCAATGGTGTTCAA
65 TCGAGCCTAGGATGCCTATGCTTGATGCACATTCTAGCATGTGCCAATGGTGTTCAA
326674 AGGAGCTACC
Statistics
Matches: 116, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
122 4 0.03
123 112 0.97
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (122 bp):
GTAGAAATATAAAGATGTACCTGAACCTACCTATTACCTGATCATGGTACGCATAGTGCATGGTT
CGAGCCTAGGATGCCTATGCTTGATGCACATTCTAGCATGTGCCAATGGTGTTCAAG
Found at i:326757 original size:45 final size:45
Alignment explanation
Indices: 326652--326764 Score: 172
Period size: 45 Copynumber: 2.5 Consensus size: 45
326642 TGCACATTCT
326652 AGCATGTGCCAATGGTGTTCAAAGGAGCTACCCACACAAAGGGCC
1 AGCATGTGCCAATGGTGTTCAAAGGAGCTACCCACACAAAGGGCC
* * *
326697 AACATATGCCAATGGTGTTCAAGGGAGCTACCCACACAAAGGGCC
1 AGCATGTGCCAATGGTGTTCAAAGGAGCTACCCACACAAAGGGCC
** *
326742 AGCATGTGCTGATGGTGGTCAAA
1 AGCATGTGCCAATGGTGTTCAAA
326765 TCATGTATGA
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 59 1.00
ACGTcount: A:0.31, C:0.24, G:0.27, T:0.18
Consensus pattern (45 bp):
AGCATGTGCCAATGGTGTTCAAAGGAGCTACCCACACAAAGGGCC
Found at i:346704 original size:45 final size:44
Alignment explanation
Indices: 346599--346711 Score: 113
Period size: 45 Copynumber: 2.5 Consensus size: 44
346589 ATACCAATGG
*
346599 TGGTCAAGGCAAT-TGCCCATACCAAAGCCAACTAGTGCCAGTGG
1 TGGTCAAGGC-ATGTGCCCATACCAAAGCCAACTAGTGCCAGTGA
* * * * * *
346643 TGGTCAAGGTAGGTGCCCTTACCAAAGGCCAGCTCGTG-CTGATGA
1 TGGTCAAGGCATGTGCCCATACCAAA-GCCAACTAGTGCCAG-TGA
*
346688 TGGTCAAGGCATGTGCCCGTACCA
1 TGGTCAAGGCATGTGCCCATACCA
346712 TATTCGGTAT
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
43 1 0.02
44 23 0.41
45 32 0.57
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.20
Consensus pattern (44 bp):
TGGTCAAGGCATGTGCCCATACCAAAGCCAACTAGTGCCAGTGA
Found at i:353768 original size:181 final size:183
Alignment explanation
Indices: 353482--355007 Score: 721
Period size: 181 Copynumber: 8.5 Consensus size: 183
353472 ATTAGTTATA
* * * *
353482 ACCTTTTGTTTTGTGAT-AAACAAATTGTTTCTGTCCATACAAGCTTATT-TGAAATATAATAAT
1 ACCTTTTGTTTTGTGATAAAAC-AATTGTTTCTGTTCATACAAGTTTATTCAG-AATAAAATAAT
* * ** *
353545 ACTAGTTTATTAATATTTCAAAAATTAATAAATAAAAGATTTATAAAAT-GA-ATATGTTTATTG
64 ACAAATTTATTAATATTTTGAAAATTAATAAATAAAAGATTTAAAAAATAGATATATGTTTATTG
* * * * *
353608 AGTAAGCTCAAATTA-TTATGACTATTTGAGCAATTTTTTATTTCAAA-AAGTTAGG
129 AATAAGCTCAAA-TAGTTATGACCATTTGAACAATTATCTATTTCAAATAA-TTAGG
* * *
353663 ATCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGTTTATTCAGAATAAAATAATAC
1 ACCTTTTGTTTTGTGATAAAACAATTGTTTCTGTTCATACAAGTTTATTCAGAATAAAATAATAC
* * * * ** * *
353728 CACTTTATTAATATTTTGTAAGTTAATACGTAAGAGATTTAAAAAATATATATATGTTTATTGAA
66 AAATTTATTAATATTTTGAAAATTAATAAATAAAAGATTTAAAAAATAGATATATGTTTATTGAA
* * * * * *
353793 TAAGTTTAAATAGTTATGTCCATTTGAACAATTATCTATTTTAAATTATTATG
131 TAAGCTCAAATAGTTATGACCATTTGAACAATTATCTATTTCAAATAATTAGG
* * *
353846 ACCTTTTGTTTTGTGGTAAAACAATTGTTTCTGTTCATACATAATTTATTCAAAATAAAATAATA
1 ACCTTTTGTTTTGTGATAAAACAATTGTTTCTGTTCATACA-AGTTTATTCAGAATAAAATAATA
* * * * * *
353911 CAAATTTATTAATATTTTGAAAA-T--T-AATAAGAGATTTAAAAACTA-A-ATCTATTTACTAA
65 CAAATTTATTAATATTTTGAAAATTAATAAATAAAAGATTTAAAAAATAGATATATGTTTATTGA
* ** * * * ** * *
353970 ACAATTTCAAATAGTTATAACTATTTGAACAATTATCTATCTCAAATTGTAATG
130 ATAAGCTCAAATAGTTATGACCATTTGAACAATTATCTATTTCAAATAATTAGG
* * * * * * * * * *
354024 ATC-TTT-ATTTGTCATACAACAATTGTTTCTTTTCACATAAG-CTATTC-GATTAAAATTATAC
1 ACCTTTTGTTTTGTGATAAAACAATTGTTTCTGTTCATACAAGTTTATTCAGAATAAAATAATAC
* * * * * *
354085 TAATTTAATAATATTCTGAAAATTAATAAGTAAAGAGATTTAAAAAATA-A-ATATGTTTGTCGA
66 AAATTTATTAATATTTTGAAAATTAATAAATAAA-AGATTTAAAAAATAGATATATGTTTATTGA
* * * * ** ***
354148 ACCAA--T-TAATAGTTAAGACTATTTGAACAATTATCTATTTCAAATCGTTCTA
130 A-TAAGCTCAAATAGTTATGACCATTTGAACAATTATCTATTTCAAATAATTAGG
* * * * * **
354200 ACC-TTTCTTTAGTCAT-AAACTATTATTT-TAGTTCATACAAACTTATTC-GAAATAAAATAAT
1 ACCTTTTGTTTTGTGATAAAACAATTGTTTCT-GTTCATACAAGTTTATTCAG-AATAAAATAAT
* * * *** ** * * * **
354261 ACTAATGTATTAACATTCAAAAAATTAATAAGCAAGAGATTTAAAAAAATA-A-ATCTATTTGCT
64 ACAAATTTATTAATATTTTGAAAATTAATAAATAAAAGATTT-AAAAAATAGATATATGTTTATT
* ** * * * * * * ** ***
354324 GAACAATTTTAATTAGATATGACTACTTGAACAATTATCTATTTAAAATTGTTTTA
128 GAATAAGCTCAAATAGTTATGACCATTTGAACAATTATCTATTTCAAATAATTAGG
* * * ** * * *
354380 ACTTTTTGTGTTGTCATAAAACAATTGTTTCAATTAATA-ACG--TA-TCTGGAATAAAATAATA
1 ACCTTTTGTTTTGTGATAAAACAATTGTTTCTGTTCATACAAGTTTATTC-AGAATAAAATAATA
* * * * ** * **
354441 CTACTTTATTAATATTTTAAAAATTATTAAGCAAGAGA-TTAAAAAACTA-A-AGCTGTTT-TCT
65 CAAATTTATTAATATTTTGAAAATTAATAAATAAAAGATTTAAAAAA-TAGATATATGTTTAT-T
* * * * * * * * * * *
354502 AAAGTAA-TTCTAATAGTTACGACTATTTGGACAAATATCAATCTCAAATCATTATG
128 GAA-TAAGCTCAAATAGTTATGACCATTTGAACAATTATCTATTTCAAATAATTAGG
* * * * *
354558 ATC-TTTATTTTGTCATAAAACAATTGTTTCTGATCATACAAGTTAATTCAG-ATAAAAATAATA
1 ACCTTTTGTTTTGTGATAAAACAATTGTTTCTGTTCATACAAGTTTATTCAGAAT-AAAATAATA
* * * * **
354621 CTAATTTAATAATATTTTCAAAATTAATAAAT---A-ATTAAAAAAATA-A-ATATGTTTGCTGA
65 CAAATTTATTAATATTTTGAAAATTAATAAATAAAAGATTTAAAAAATAGATATATGTTTATTGA
* * * ** * * * **
354680 ATCAA-TTTAAATAGTTAAGATTATTAGAATAATTATCTATTTCAAATCATTTTG
130 AT-AAGCTCAAATAGTTATGACCATTTGAACAATTATCTATTTCAAATAATTAGG
* * * * * * * * *
354734 ACCTTTTGTTTAGTCATAAAATAATT-TTT-TAGTTCAAAAAAGCTTATTCAAAAGAAAATAATT
1 ACCTTTTGTTTTGTGATAAAACAATTGTTTCT-GTTCATACAAGTTTATTCAGAATAAAATAATA
* *** ** *
354797 CTAATTTATTAACT-TTCCAAAAATTAATAAGGAAGAA-ATTTGAAAAAATA-A-ATATGTTTAC
65 CAAATTTATTAA-TATTTTGAAAATTAATAAATAA-AAGATTT-AAAAAATAGATATATGTTTAT
* * * * * * * * * *
354858 TGAACAAGTTCAAATAGCTATAACTATTTAAATAATTATCTATTTAAAATCGA-TATG
127 TGAATAAGCTCAAATAGTTATGACCATTTGAACAATTATCTATTTCAAAT-AATTAGG
* * * * * * *
354915 AACTTTTATTTTGTCATAAAACAATTGTTT-TAGTTCACAAAAGTTTATCCA-AAAAAAATAATA
1 ACCTTTTGTTTTGTGATAAAACAATTGTTTCT-GTTCATACAAGTTTATTCAGAATAAAATAATA
** * *
354978 TTAGTTTATTAATATTTTAAAAATTAATAA
65 CAAATTTATTAATATTTTGAAAATTAATAA
355008 GAGATTTAAA
Statistics
Matches: 1060, Mismatches: 235, Indels: 100
0.76 0.17 0.07
Matches are distributed among these distances:
173 30 0.03
174 6 0.01
175 4 0.00
176 190 0.18
177 94 0.09
178 187 0.18
179 55 0.05
180 102 0.10
181 217 0.20
182 45 0.04
183 89 0.08
184 41 0.04
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (183 bp):
ACCTTTTGTTTTGTGATAAAACAATTGTTTCTGTTCATACAAGTTTATTCAGAATAAAATAATAC
AAATTTATTAATATTTTGAAAATTAATAAATAAAAGATTTAAAAAATAGATATATGTTTATTGAA
TAAGCTCAAATAGTTATGACCATTTGAACAATTATCTATTTCAAATAATTAGG
Found at i:354123 original size:178 final size:177
Alignment explanation
Indices: 353491--355114 Score: 1066
Period size: 176 Copynumber: 9.1 Consensus size: 177
353481 AACCTTTTGT
* * * * *
353491 TTTGTGAT-AAACAAATTGTTTCTGTCCATACAAGCTTATT-TGAAATATAATAATACTAGTTTA
1 TTTGTCATAAAAC-AATTGTTTCTGTTCATACAAGC-TATTCAG-AATAAAATAATACTAATTTA
** * * * * * * * ** * *
353554 TTAATATTTCAAAAATTAATAAATAAAAGATTTATAAAATGAATATGTTTATTGAGTAAGCTCAA
63 TTAATATTTTGAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACTAAACAA-TTTAA
* * * ** * *
353619 ATTA-TTATGACTATTTGAGCAATTTTTTATTTCAAAAAGTTAGGATCTTTTGT
127 A-TAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGATC-TTT-A
* * * *
353672 TTTGTCATAAAACAATTGTTTCTATTCATACAAGTTTATTCAGAATAAAATAATACCACTTTATT
1 TTTGTCATAAAACAATTGTTTCTGTTCATACAAG-CTATTCAGAATAAAATAATACTAATTTATT
* * * * * * *
353737 AATATTTTGTAAGTTAATACGTAAGAGATTTAAAAAATATATATATGTTTATTGAATAAGTTTAA
65 AATATTTTGAAAATTAATAAGTAAGAGATTTAAAAAATA-A-ATCTGTTTACTAAACAA-TTTAA
* * * * * *
353802 ATAGTTATGTCCATTTGAACAATTATCTATTTTAAATTATTATGACCTTTTGT
127 ATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGATC-TTT-A
** ** * *
353855 TTTGTGGTAAAACAATTGTTTCTGTTCATACATAATTTATTCAAAATAAAATAATACAAATTTAT
1 TTTGTCATAAAACAATTGTTTCTGTTCATAC--AAGCTATTCAGAATAAAATAATACTAATTTAT
* *
353920 TAATATTTTGAAAA-T--TAA-TAAGAGATTTAAAAACTAAATCTATTTACTAAACAATTTCAAA
64 TAATATTTTGAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACTAAACAATTT-AAA
* * *
353981 TAGTTATAACTATTTGAACAATTATCTATCTCAAATTGTAATGATCTTTA
128 TAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGATCTTTA
* * * * * * *
354031 TTTGTCATACAACAATTGTTTCTTTTCACATAAGCTATTC-GATTAAAATTATACTAATTTAATA
1 TTTGTCATAAAACAATTGTTTCTGTTCATACAAGCTATTCAGAATAAAATAATACTAATTTATTA
* * * * *
354095 ATATTCTGAAAATTAATAAGTAAAGAGATTTAAAAAATAAATATGTTTGTCGAACCAA-TT-AAT
66 ATATTTTGAAAATTAATAAGT-AAGAGATTTAAAAAATAAATCTGTTT-ACTAAACAATTTAAAT
* * * * * *
354158 AGTTAAGACTATTTGAACAATTATCTATTTCAAATCGTTCTAACCTTTC
129 AGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGATCTTTA
* * * *
354207 TTTAGTCAT-AAACTATTATTT-TAGTTCATACAAACTTATTC-GAAATAAAATAATACTAATGT
1 TTT-GTCATAAAACAATTGTTTCT-GTTCATACAAGC-TATTCAG-AATAAAATAATACTAATTT
* *** * * * *
354269 ATTAACATTCAAAAAATTAATAAGCAAGAGATTTAAAAAAATAAATCTATTTGCTGAACAATTTT
62 ATTAATATTTTGAAAATTAATAAGTAAGAGATTT-AAAAAATAAATCTGTTTACTAAACAA-TTT
* * * * * * * *
354334 AATTAGATATGACTACTTGAACAATTATCTATTTAAAATTGTTTTAACTTTTTG
125 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGA-TCTTTA
** * * * *
354388 TGTTGTCATAAAACAATTGTTTCAATTAATA-ACG-TA-TCTGGAATAAAATAATACTACTTTAT
1 T-TTGTCATAAAACAATTGTTTCTGTTCATACAAGCTATTC-AGAATAAAATAATACTAATTTAT
* * * * * *
354450 TAATATTTTAAAAATTATTAAGCAAGAGA-TTAAAAAACTAAAGCTGTTTTCTAAAGTAATTCT-
64 TAATATTTTGAAAATTAATAAGTAAGAGATTTAAAAAA-TAAATCTGTTTACTAAA-CAATT-TA
* * * * * **
354513 AATAGTTACGACTATTTGGACAAATATCAATCTCAAATCATTATGATCTTTA
126 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGATCTTTA
* *
354565 TTTTGTCATAAAACAATTGTTTCTGATCATACAAGTTAATTCAG-ATAAAAATAATACTAATTTA
1 -TTTGTCATAAAACAATTGTTTCTGTTCATACAAGCT-ATTCAGAAT-AAAATAATACTAATTTA
* * * * * * *
354629 ATAATATTTTCAAAATTAAT-A--AATA-ATTAAAAAAATAAATATGTTTGCTGAATCAATTTAA
63 TTAATATTTTGAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACT-AAACAATTTAA
* * * * ** * * *
354690 ATAGTTAAGATTATTAGAATAATTATCTATTTCAAATCATTTTGACCTTTTG
127 ATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGATC-TTTA
* * * * * *
354742 TTTAGTCATAAAATAATT-TTT-TAGTTCAAAAAAGCTTATTCAAAAGAAAATAATTCTAATTTA
1 TTT-GTCATAAAACAATTGTTTCT-GTTCATACAAGC-TATTCAGAATAAAATAATACTAATTTA
*** * * * * *
354805 TTAACT-TTCCAAAAATTAATAAGGAAGAAATTTGAAAAAATAAATATGTTTACTGAACAAGTTC
63 TTAA-TATTTTGAAAATTAATAAGTAAGAGATTT-AAAAAATAAATCTGTTTACTAAACAA-TTT
* * * * * * * *
354869 AAATAGCTATAACTATTTAAATAATTATCTATTTAAAATCGATATGAACTTTTA
125 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGATC-TTTA
* * * * * * *
354923 TTTTGTCATAAAACAATTGTTT-TAGTTCACAAAAGTTTATCCA-AAAAAAATAATATTAGTTTA
1 -TTTGTCATAAAACAATTGTTTCT-GTTCATACAAG-CTATTCAGAATAAAATAATACTAATTTA
* * *
354986 TTAATATTTT-AAAA--ATTAA-TAAGAGATTTAAAAAATAAATCAGTTTACTGAATCAATTTTA
63 TTAATATTTTGAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACT-AAACAA-TTTA
* * * * * *
355047 AATAATTATGGA-TATTTAAATAATTATCTATTTCAAA-TCTTATTACCTTTCA
126 AATAGTTAT-GACTATTTGAACAATTATCTATTTCAAATTGTTATGATCTTT-A
355099 TTTTGTCATAAAACAA
1 -TTTGTCATAAAACAA
355115 GTTTTTCAAC
Statistics
Matches: 1148, Mismatches: 235, Indels: 125
0.76 0.16 0.08
Matches are distributed among these distances:
173 30 0.03
174 8 0.01
175 6 0.01
176 234 0.20
177 145 0.13
178 189 0.16
179 65 0.06
180 104 0.09
181 191 0.17
182 48 0.04
183 88 0.08
184 38 0.03
185 2 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (177 bp):
TTTGTCATAAAACAATTGTTTCTGTTCATACAAGCTATTCAGAATAAAATAATACTAATTTATTA
ATATTTTGAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTACTAAACAATTTAAATAG
TTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGATCTTTA
Found at i:354695 original size:534 final size:530
Alignment explanation
Indices: 353899--355050 Score: 1308
Period size: 535 Copynumber: 2.2 Consensus size: 530
353889 ATTTATTCAA
* * * *
353899 AATAAAATAATACAAATTTATTAATATTTTGAAAATTAATAAGAGATTTAAAAACTAAATCTATT
1 AATAAAATAATACAAATTTATTAATATTTTAAAAATTAACAAGAGATTAAAAAACTAAAGCTATT
* * * **
353964 TACTAAACAATTTCAAATAGTTATAACTATTTGAACAATTATCTATCTCAAATTGTAATGATCTT
66 TACTAAACAATTTCAAATAGTTACAACTATTTGAACAAATATCAATCTCAAATCATAATGATCTT
* ** * * *
354029 TATTTGTCATACAACAATTGTTTCTTTTCACATAAGCTATTCGATTAAAATTATACTAATTTAAT
131 TATTTGTCATAAAACAATTGTTTCTGATCACACAAGCTATTCGATAAAAATAATACTAATTTAAT
* *
354094 AATATTCTGAAAATTAATAAGTAAAGAGATTTAAAAAATAAATATGTTTGTCGAACCAATTAATA
196 AATATTCTCAAAATT-ATAAGTAAAGAGATTAAAAAAATAAATATGTTTGTCGAACCAATTAATA
* * *
354159 GTTAAGACTATTTGAACAATTATCTATTTCAAATCGTTCTAACC-TTTCTTTAGTCATAAACT-A
260 GTTAAGACTATTAGAACAATTATCTATTTCAAATCATTCTAACCTTTTCTTTAGTCATAAAATAA
* * *
354222 TTATTTTAGTTCATACAAA-CTTATTCGAAATAAAATAATACTAATGTATTAACATTCAAAAAAT
325 TT-TTTTAGTTCA-AAAAAGCTTATTCAAAAGAAAATAATACTAATGTATTAACATTCAAAAAAT
* * * * * * *
354286 TAATAAGCAAGAGATTTAAAAAAATAAATCTATTTGCTGAACAATTTTAATTAGATATGACTACT
388 TAATAAGCAAGAAATTTAAAAAAATAAATATATTTACTGAACAAGTTCAAATAGATATAACTACT
* * * *
354351 TGAACAATTATCTATTTAAAATTG-TTTTAACTTTT-TGTGTTGTCATAAAACAATTGTTTCAAT
453 TAAACAATTATCTATTTAAAATCGATATGAACTTTTAT-T-TTGTCATAAAACAATTGTTTCAAT
354414 TAATAACGTATCTGG
516 TAATAACGTATCTGG
* *
354429 AATAAAATAATACTACTTTATTAATATTTTAAAAATTATTAAGCAAGAGATTAAAAAACTAAAGC
1 AATAAAATAATACAAATTTATTAATATTTT-AAAA--ATTAA-CAAGAGATTAAAAAACTAAAGC
* * * * * * *
354494 TGTTTTCTAAAGTAA-TTCTAATAGTTACGACTATTTGGACAAATATCAATCTCAAATCATTATG
62 TATTTACTAAA-CAATTTCAAATAGTTACAACTATTTGAACAAATATCAATCTCAAATCATAATG
* *
354558 ATCTTTATTTTGTCATAAAACAATTGTTTCTGATCATACAAGTTAATTCAGATAAAAATAATACT
126 ATCTTTA-TTTGTCATAAAACAATTGTTTCTGATCACACAAGCT-ATTC-GATAAAAATAATACT
* * *
354623 AATTTAATAATATTTTCAAAA-T-TAA-TAAATA-ATTAAAAAAATAAATATGTTTG-CTGAATC
188 AATTTAATAATATTCTCAAAATTATAAGTAAAGAGATTAAAAAAATAAATATGTTTGTC-GAACC
* * * * *
354683 AATTTAAATAGTTAAGATTATTAGAATAATTATCTATTTCAAATCATTTTGACCTTTTGTTTAGT
252 AA-TT-AATAGTTAAGACTATTAGAACAATTATCTATTTCAAATCATTCTAACCTTTTCTTTAGT
* * *
354748 CATAAAATAATTTTTTAGTTCAAAAAAGCTTATTCAAAAGAAAATAATTCTAATTTATTAACTTT
315 CATAAAATAATTTTTTAGTTCAAAAAAGCTTATTCAAAAGAAAATAATACTAATGTATTAACATT
* * * * *
354813 CCAAAAATTAATAAGGAAGAAATTTGAAAAAATAAATATGTTTACTGAACAAGTTCAAATAGCTA
380 CAAAAAATTAATAAGCAAGAAATTTAAAAAAATAAATATATTTACTGAACAAGTTCAAATAGATA
* *
354878 TAACTATTTAAATAATTATCTATTTAAAATCGATATGAACTTTTATTTTGTCATAAAACAATTGT
445 TAACTACTTAAACAATTATCTATTTAAAATCGATATGAACTTTTATTTTGTCATAAAACAATTGT
* * * **
354943 TTTAGTTCACA-AAAGTTTATC-CA
510 TTCAATT-A-ATAACG--TATCTGG
* ** * * *
354966 AAAAAAATAATATTAGTTTATTAATATTTTAAAAATTAATAAGAGATTTAAAAAA-TAAATC-AG
1 AATAAAATAATACAAATTTATTAATATTTTAAAAATTAACAAGAGA-TTAAAAAACTAAAGCTA-
* *
355029 TTTACTGAATCAATTTTAAATA
64 TTTACT-AAACAATTTCAAATA
355051 ATTATGGATA
Statistics
Matches: 519, Mismatches: 79, Indels: 44
0.81 0.12 0.07
Matches are distributed among these distances:
530 28 0.05
531 4 0.01
532 27 0.05
533 30 0.06
534 145 0.28
535 194 0.37
536 26 0.05
537 61 0.12
538 4 0.01
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.39
Consensus pattern (530 bp):
AATAAAATAATACAAATTTATTAATATTTTAAAAATTAACAAGAGATTAAAAAACTAAAGCTATT
TACTAAACAATTTCAAATAGTTACAACTATTTGAACAAATATCAATCTCAAATCATAATGATCTT
TATTTGTCATAAAACAATTGTTTCTGATCACACAAGCTATTCGATAAAAATAATACTAATTTAAT
AATATTCTCAAAATTATAAGTAAAGAGATTAAAAAAATAAATATGTTTGTCGAACCAATTAATAG
TTAAGACTATTAGAACAATTATCTATTTCAAATCATTCTAACCTTTTCTTTAGTCATAAAATAAT
TTTTTAGTTCAAAAAAGCTTATTCAAAAGAAAATAATACTAATGTATTAACATTCAAAAAATTAA
TAAGCAAGAAATTTAAAAAAATAAATATATTTACTGAACAAGTTCAAATAGATATAACTACTTAA
ACAATTATCTATTTAAAATCGATATGAACTTTTATTTTGTCATAAAACAATTGTTTCAATTAATA
ACGTATCTGG
Found at i:355366 original size:20 final size:20
Alignment explanation
Indices: 355341--355395 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
355331 AACCTTTTTG
355341 TTCTGTCATAAAATAATTAT
1 TTCTGTCATAAAATAATTAT
355361 TTCTGTTCATATAAAT--TTAT
1 TTCTG-TCATA-AAATAATTAT
*
355381 TTC-G-AATAAAATAAT
1 TTCTGTCATAAAATAAT
355396 ACTAAATTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 10
0.73 0.02 0.24
Matches are distributed among these distances:
16 4 0.13
17 3 0.10
18 1 0.03
19 1 0.03
20 12 0.40
21 5 0.17
22 4 0.13
ACGTcount: A:0.40, C:0.09, G:0.05, T:0.45
Consensus pattern (20 bp):
TTCTGTCATAAAATAATTAT
Found at i:355756 original size:178 final size:179
Alignment explanation
Indices: 355145--355817 Score: 620
Period size: 178 Copynumber: 3.7 Consensus size: 179
355135 ATTTGAAATA
* * * * *
355145 AAATTGTTAGT-A-CTTTTCGTTTTGTCATAAAACAATAATTT-TGA-ACATACAAGTTTATT-T
1 AAATTGTTA-TAACCTTTTTGTTTTGTCATAAAATAATTATTTCT-ATTCATACAAGTTTATTCA
* * * *
355205 GAAATAAAATAATACTAATTTATTAATATTTCAAGAATTAGT-A-T--GAGATTCAAAAAATTAA
64 G-AATAAAATAATACTAATTTAATAATATTTTAACAATTA-TAACTAAGAGATTTAAAAAA-TAA
* * ** * * *
355266 TCTATTTATTGAATAAGTTCAAATAGTTATGACTATTTGAACAATTATTTATTTC
126 TTTATTTATCGAACCACTTCAAATAGTTAT-ACTATTTGAACAATTATATATTTT
* * * * *
355321 AAATTGTTACAACCTTTTTGTTCTGTCATAAAATAATTATTTCTGTTCATATAAATTTATTTC-G
1 AAATTGTTATAACCTTTTTGTTTTGTCATAAAATAATTATTTCTATTCATACAAGTTTA-TTCAG
* * * * *
355385 AATAAAATAATACTAAATTAATAATATTCTAAAAATTCATAACTAATAGGTTTAAAAAATAAATT
65 AATAAAATAATACTAATTTAATAATATTTTAACAATT-ATAACTAAGAGATTTAAAAAAT-AATT
* * * * *
355450 TATTTGTCAAACCACTTCAAATAGTTAAGACTATATGAATAATTATCTATTATTTT
128 TATTTATCGAACCACTTCAAATAGTT-ATACTATTTGAACAATTA--TA-TATTTT
** * * ** * *
355506 AAATCATTATAACC-TTTTGTTTTGTTATAAAACAATTATTTC-AACCTATCCAAGTTTATTCAT
1 AAATTGTTATAACCTTTTTGTTTTGTCATAAAATAATTATTTCTATTC-ATACAAGTTTATTCAG
* * *
355569 AATAAAATAAAACTAATTTATTAATATTTTAA-AATT-TTA-TAAGAGATTTAAAAAATAATGTT
65 AATAAAATAATACTAATTTAATAATATTTTAACAATTATAACTAAGAGATTTAAAAAATAAT-TT
* *
355631 ATTTATGGAACCACTTCAAATAATTATACTTATTTGAACAATTATATATTTT
129 ATTTATCGAACCACTTCAAATAGTTATAC-TATTTGAACAATTATATATTTT
* * * * *
355683 AATTTGTTATAGCCTTTTTGTTTTCTCATAAAATAATTATGTCTATTCATACAAGCTTATTCAGA
1 AAATTGTTATAACCTTTTTGTTTTGTCATAAAATAATTATTTCTATTCATACAAGTTTATTCAGA
*
355748 ATAAAATAATACTAATTTAATAATATTTTAACAATTAATAACTAAGAGATTTCAAAAATAAATTT
66 ATAAAATAATACTAATTTAATAATATTTTAACAATT-ATAACTAAGAGATTTAAAAAAT-AATTT
*
355813 GTTTA
129 ATTTA
355818 ACTATTTGTA
Statistics
Matches: 396, Mismatches: 74, Indels: 48
0.76 0.14 0.09
Matches are distributed among these distances:
176 10 0.03
177 41 0.10
178 113 0.29
179 17 0.04
180 51 0.13
181 5 0.01
182 69 0.17
183 12 0.03
184 62 0.16
185 16 0.04
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.42
Consensus pattern (179 bp):
AAATTGTTATAACCTTTTTGTTTTGTCATAAAATAATTATTTCTATTCATACAAGTTTATTCAGA
ATAAAATAATACTAATTTAATAATATTTTAACAATTATAACTAAGAGATTTAAAAAATAATTTAT
TTATCGAACCACTTCAAATAGTTATACTATTTGAACAATTATATATTTT
Found at i:356365 original size:160 final size:160
Alignment explanation
Indices: 356168--356487 Score: 349
Period size: 160 Copynumber: 2.0 Consensus size: 160
356158 AAGTTATAAC
* ** * * *
356168 GATTTGAAATAGATAATTATTCATATATCCTTAACTATTTGAATTAGTTCGACAAACAAATTTAT
1 GATTTGAAATAGATAATTATTCAAATATCAATAACTATTTAAACTAGTCCGACAAACAAATTTAT
* * * * **
356233 TTTTTAAATCTCTTAGTTATT-GATTTTCATAATATTATTAGA-TAAGTATTATTTTATTCTGAA
66 TTTTTAAATCTCCTACTTATTAGATTTTCA-AATATTAATAAATTAA-TATTATTTTATTCCAAA
* * *
356296 TAAGCTTGTGTGAACATAAATAATTATTTTAT
129 TAAACTTGTATGAACAAAAATAATTATTTTAT
* ** ** *
356328 GATTTGAAATATATAATTATTCAAATAGT-AATAACTATTTAAACTAGTCCGGTAAGTATATTTA
1 GATTTGAAATAGATAATTATTCAAATA-TCAATAACTATTTAAACTAGTCCGACAAACAAATTTA
* * *
356392 TTTTTTAATTCTCCTACTTATTAGTTTTTGAAATATTAATAAATTAATATTATTTTATTCCAAAT
65 TTTTTTAAATCTCCTACTTATTAGATTTTCAAATATTAATAAATTAATATTATTTTATTCCAAAT
** *
356457 AAACTTGTATGATTAAAAATAATTGTTTTAT
130 AAACTTGTATGAACAAAAATAATTATTTTAT
356488 AACAAAATAA
Statistics
Matches: 130, Mismatches: 27, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
160 120 0.92
161 10 0.08
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (160 bp):
GATTTGAAATAGATAATTATTCAAATATCAATAACTATTTAAACTAGTCCGACAAACAAATTTAT
TTTTTAAATCTCCTACTTATTAGATTTTCAAATATTAATAAATTAATATTATTTTATTCCAAATA
AACTTGTATGAACAAAAATAATTATTTTAT
Found at i:357329 original size:181 final size:178
Alignment explanation
Indices: 356347--357546 Score: 492
Period size: 182 Copynumber: 6.7 Consensus size: 178
356337 TATATAATTA
* * * ** * * * *
356347 TTCAAATAGTAATAACTATTTAAAC-TAGTCCGGTAAGTATATTTATTTTTTAATTCTCCTACTT
1 TTCAAATAGTCATAACTATTTAAACTTACT-CGGCAAACAAATTTATTTTTTAAATATCCAACTT
* * ** ** *
356411 ATTAGTTTTT-GAAATATTAATAAATTAATATTATTTTATTCCAAATAAACTTGTATGATTAAAA
65 ATTAATTTTTAG-AATATTAATAAATTAGTATTATTTTATTCTGAATAATTTTGTATGA--ATAA
* * * * * * * * *
356475 ATAATTGTTTTATAACAAAATAAAA-AGTTCATAACGATTTGAAATAGATAATTG
127 A-AATTGTTTTACAACAAAACAAAATA--CCATAATGATTTAAAACAAACAATAG
** * * * * * * ** ** * *
356529 TTTGAATGGCCATAATTATTTAAACTAATTTGATAAACTGATTTATTTTTTAAATCTCCAACTTC
1 TTCAAATAGTCATAACTATTTAAACTTACTCGGCAAACAAATTTATTTTTTAAATATCCAACTTA
* * * * * * *
356594 TCAATTTTT-GAAATATTAATAAAGTAATATTATTTTATTTTGGATAAGTTT-TATTAAACTAAA
66 TTAATTTTTAG-AATATTAATAAATTAGTATTATTTTATTCTGAATAATTTTGTA-TGAA-T-AA
* ** * ** ** * * * * *
356657 ATAATTTTTTTATGATAAAA-AAAAGT-TTATAACAATTTTAAATAGATAATTG
127 A-AATTGTTTTACAACAAAACAAAA-TACCATAATGATTTAAAACAAACAATAG
* * * * * * * ***
356709 TTCAAATAATCATAACTATTTGAACTTATTCAGTAAACAGATTTATTTTTTAAAATTTCTTGCTT
1 TTCAAATAGTCATAACTATTTAAACTTACTCGGCAAACAAATTTATTTTTT-AAATATCCAACTT
* * *
356774 ATTAATTTTCTA-AATATTAATAAAATTA-TATTATTTTATT-TCAAATTAGCTTTTATTAACTG
65 ATTAATTTT-TAGAATATTAAT-AAATTAGTATTATTTTATTCT-GAA-TA-ATTTT-GT-A-TG
* * * *** * * * *
356836 AAAAAAAAAAT-TTTT--GACAAAACAAAAGGTCAGAATGATTTGAAATAGACAATTA-
122 -AATAAAAATTGTTTTACAACAAAACAAAATACCATAATGATTTAAAACAAACAA-TAG
* * *** * * * * * **
356891 TTCTAATAGTCTTAACTA-TTATAACTGGTTTGACAAGCACATTTATTTTTTAAATCTCTTACTT
1 TTCAAATAGTCATAACTATTTA-AACTTACTCGGCAAACAAATTTATTTTTTAAATATCCAACTT
* ** * * ** *
356955 ATTAATTTTTAGAAT-TTATTAGTTTAGCATTATTTTATTCAGAATAAGCTTGCATGAATAGAAA
65 ATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTCTGAATAATTTTGTATGAAT--AAA
** * * * * * *** *
357019 CAATTTGTTTTATGACAAAACAAGAT--CATACT-ATTTGAGATAGGTAATTG
128 -AA-TTGTTTTACAACAAAACAAAATACCATAATGATTTAAAACAAACAATAG
* * * * * * **
357069 TTGAAATAGTCATAACTATTTAAACTGATTTGGTAAACAGATTTAGCTTTTAAATAT----CTTA
1 TTCAAATAGTCATAACTATTTAAACTTACTCGGCAAACAAATTTATTTTTTAAATATCCAACTTA
* * *
357130 TTAACTTTT-GAAATATTAATAAATTAGTATTACTTGATTCTGAATAATTTTGTATGAATAAAAC
66 TTAATTTTTAG-AATATTAATAAATTAGTATTATTTTATTCTGAATAATTTTGTATGAAT-AAA-
* * * *
357194 AATTGTTTTCCAACAAAACAAAATGCCATAATGATTTGAAACAGACAATAG
128 AATTGTTTTACAACAAAACAAAATACCATAATGATTTAAAACAAACAATAG
* * * * * * * *
357245 TTCAAATGGAT-ATGACTATTTGAATTTATTTGGCAAACATATTTATTTTTTTAAATCTCCAACT
1 TTCAAATAG-TCATAACTATTTAAACTTACTCGGCAAACAAATTTA-TTTTTTAAATATCCAACT
* ** *
357309 TATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATT-TCAAATAAACTTGTATGAATAGA
64 TATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTCT-GAATAATTTTGTATGAATAAA
* ** * * * *
357373 AATTTTTTTATGACAAAACAAAATATCATAATGATTTAAAATAAATAATTG
128 AATTGTTTTACAACAAAACAAAATACCATAATGATTTAAAACAAACAATAG
* ** ***
357424 TTCAAATAGTCATAACTATTTAAACTTGCTCGTTAAACAAATTTATTTTTTAAATATTTTACTTA
1 TTCAAATAGTCATAACTATTTAAACTTACTCGGCAAACAAATTTATTTTTTAAATATCCAACTTA
*
357489 TTAATTTTTAGAATTTTAATAAATTAGTATTATTTCTATTCTGAATAAGTTTT-TATGA
66 TTAATTTTTAGAATATTAATAAATTAGTATTATTT-TATTCTGAATAA-TTTTGTATGA
357547 GCAATAACAA
Statistics
Matches: 783, Mismatches: 185, Indels: 103
0.73 0.17 0.10
Matches are distributed among these distances:
173 19 0.02
174 23 0.03
175 41 0.05
176 52 0.07
177 13 0.02
178 108 0.14
179 104 0.13
180 89 0.11
181 139 0.18
182 174 0.22
183 10 0.01
184 3 0.00
185 4 0.01
186 2 0.00
187 2 0.00
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.43
Consensus pattern (178 bp):
TTCAAATAGTCATAACTATTTAAACTTACTCGGCAAACAAATTTATTTTTTAAATATCCAACTTA
TTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTCTGAATAATTTTGTATGAATAAAAAT
TGTTTTACAACAAAACAAAATACCATAATGATTTAAAACAAACAATAG
Found at i:357615 original size:181 final size:179
Alignment explanation
Indices: 356326--364289 Score: 4854
Period size: 181 Copynumber: 44.6 Consensus size: 179
356316 TAATTATTTT
* * * * * * ** *
356326 ATGATTTGAAATATATAATTATTCAAATAGTAATAACTATTTAAACTAGTCCGGTAAGTATATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
* ** * * *
356391 ATTTTTTAATTCTCCTACTTATTAGTTTTTGAAATATTAATAAATTAATATTATTTTATTCCAAA
66 ATTTTTTAAATCTTTTACTTATTAATTTTTG-AATATTAATAAATTAGTATTATTTTATTCTAAA
* * * * * *
356456 TAAACTTGTATGATTA-AAAATAATTGTTTTATAACAAAATAAAAAGTTCATA
130 TAAGCTTGTATGA--ACAAAACAATTATTTTATGACAAAA-CAAAAGGTCATA
* ** * * * * ** * * **
356508 ACGATTTGAAATAGATAATTGTTTGAATGGCCATAATTATTTAAACTAATTTGATAAACTGATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
*** * * * * * **
356573 ATTTTTTAAATCTCCAACTTCTCAATTTTTGAAATATTAATAAAGTAATATTATTTTATTTTGGA
66 ATTTTTTAAATCTTTTACTTATTAATTTTTG-AATATTAATAAATTAGTATTATTTTATTCTAAA
* * * * * * *
356638 TAAG-TTTTATTAAACTAAAATAATTTTTTTATGATAAAA-AAAAGTTTATA
130 TAAGCTTGTA-TGAAC-AAAACAATTATTTTATGACAAAACAAAAGGTCATA
** * * * * *
356688 ACAATTTTAAATAGATAATTGTTCAAATAATCATAACTATTTGAACTTATTCAGTAAACAGATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
* *
356753 ATTTTTTAAAAT-TTCTTGCTTATTAATTTTCTAAATATTAATAAAATTA-TATTATTTTATT-T
66 ATTTTTT-AAATCTT-TTACTTATTAATTTT-TGAATATTAAT-AAATTAGTATTATTTTATTCT
* * * * ** *
356815 CAAATTAGCTTTTATTAACTGAAAAAAAAAATTTT-TGACAAAACAAAAGGTCAGA
127 -AAATAAGCTTGTATGAAC--AAAACAATTATTTTATGACAAAACAAAAGGTCATA
* * * * * * ** * *
356870 ATGATTTGAAATAGACAATTATTCTAATAGTCTTAACTATTAT-AACTGGTTTGACAAGCACATT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATT-TGAACTTGTTCGGTAAACAAATT
* * ** *
356934 TATTTTTTAAATCTCTTACTTATTAATTTTTAGAAT-TTATTAGTTTAGCATTATTTTATTC-AG
65 TATTTTTTAAATCTTTTACTTATTAATTTTT-GAATATTAATAAATTAGTATTATTTTATTCTA-
* * * *
356997 AATAAGCTTGCATGAATAGAAACAATTTGTTTTATGACAAAAC--AAGATCATA
128 AATAAGCTTGTATGAACA-AAACAA-TTATTTTATGACAAAACAAAAGGTCATA
* * * * * * *
357049 CT-ATTTGAGATAGGTAATTGTTGAAATAGTCATAACTATTTAAAC-TGATTTGGTAAACAGATT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTG-TTCGGTAAACAAATT
** * * * * *
357112 TAGCTTTTAAA---TAT-CTTATTAACTTTTGAAATATTAATAAATTAGTATTACTTGATTCTGA
65 TATTTTTTAAATCTTTTACTTATTAATTTTTG-AATATTAATAAATTAGTATTATTTTATTCTAA
** * * *** * *
357173 ATAATTTTGTATGAATAAAACAATTGTTTTCCAACAAAACAAAATGCCATA
129 ATAAGCTTGTATGAACAAAACAATTATTTTATGACAAAACAAAAGGTCATA
* * * * * * * * * *
357224 ATGATTTGAAACAGACAATAGTTCAAATGGAT-ATGACTATTTGAATTTATTTGGCAAACATATT
1 ATGATTTGAAATAGATAATTGTTCAAATAG-TCATAACTATTTGAACTTGTTCGGTAAACAAATT
***
357288 TATTTTTTTAAATCTCCAACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATT-TC
65 TA-TTTTTTAAATCTTTTACTTATTAATTTTT-GAATATTAATAAATTAGTATTATTTTATTCT-
* * * * **
357352 AAATAAACTTGTATGAA-TAGA-AATTTTTTTATGACAAAACAAAATATCATA
127 AAATAAGCTTGTATGAACAAAACAATTATTTTATGACAAAACAAAAGGTCATA
* * * * *
357403 ATGATTTAAAATAAATAATTGTTCAAATAGTCATAACTATTTAAACTTGCTCGTTAAACAAATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
* * *
357468 ATTTTTTAAATATTTTACTTATTAATTTTTAGAATTTTAATAAATTAGTATTATTTCTATTCTGA
66 ATTTTTTAAATCTTTTACTTATTAATTTTT-GAATATTAATAAATTAGTATTATTT-TATTCTAA
* * * * ** * *
357533 ATAAGTTTTTATGAGCAATAACAATTAGTTTATGATGAAACACAAGATCAT-
129 ATAAGCTTGTATGAACAA-AACAATTATTTTATGACAAAACAAAAGGTCATA
*
357584 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAA-TGTGTTC---AGA-AAA--
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT-TGTTCGGTAAACAAATT
*
357642 TA---TTT---T-TTTT-CTTATTAATTTTTGGAATATTAATAAATTTA-AATTATTTTATTC-A
65 TATTTTTTAAATCTTTTACTTATTAATTTTT-GAATATTAATAAA-TTAGTATTATTTTATTCTA
* * *
357697 AAGTAAGCTTGCATGAACAAAACCAATTATTTTGTGGCAAAACAAAAGGTCATA
128 AA-TAAGCTTGTATGAACAAAA-CAATTATTTTATGACAAAACAAAAGGTCATA
* * * * * **
357751 ATGTTTTAAAATAGATAATTGTTCATATAGTCATAACTATTTGAACTTATTTGGT----AAATGG
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
** * * *
357812 ATTTTTT-TGTGTTCT-CTCATTAATTTTTGGAATATTAATAAATTAGTATTATTTTACTTC-AA
66 ATTTTTTAAATCTTTTACTTATTAATTTTT-GAATATTAATAAATTAGTATTATTTTA-TTCTAA
* * * * * *
357874 ATAAACTTATATGAACTGAAAA-AATTGTTTTATTACAAAAGAAAAAGTCATA
129 ATAAGCTTGTATGAAC--AAAACAATTATTTTATGACAAAACAAAAGGTCATA
* * * * * * *
357926 ATGATTTGAAATAGATAATTATTTAAATAGTCATGACTATTTGAACTTATTTGGCAAACATATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
*** * *
357991 ATTTTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAATATTATTTTAATCTAA
66 A-TTTTTTAAATCTTTTACTTATTAATT-TTTGAATATTAATAAATTAGTATTATTTTATTCTAA
* * * *
358056 ATAAACTTGTAT-AAGCATAAACAATTGTTTTATGATAAAACAAAAGGCCATA
129 ATAAGCTTGTATGAA-CA-AAACAATTATTTTATGACAAAACAAAAGGTCATA
** * * *** * * *
358108 ACAAGTTGAAATAAATAATTACACAAATTGTCATAACGATTTGAACTTGTTTGGTAAACAAATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
* * * * *
358173 ATTTTTTAAATCTTTTGCATTTTTAATTGTCTT-AATATTAATAAATTTGAATTATATTATT-TG
66 ATTTTTTAAATCTTTTAC-TTATTAATT-T-TTGAATATTAATAAATTAGTATTATTTTATTCT-
* * * * *
358236 AAATAAGATTGTATGAATAGATAA-AATTCTTTTGTGACAAAACAAAAGGTTATA
127 AAATAAGCTTGTATGAACA-A-AACAATTATTTTATGACAAAACAAAAGGTCATA
*** * * * * * * *
358290 GCAATTTTCAAATAGATAATTGTACAAACAGTCATAATTATTTAAACTTTTTCAGTAAACAAATT
1 ATGA-TTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATT
* * * * *
358355 CATCTTTTTAAATTTCTTTA-TTATGAATTTTTGAATTACTAATAAATTGGTATTATTTTATT-T
65 TAT-TTTTTAAATCT-TTTACTTATTAATTTTTGAA-TATTAATAAATTAGTATTATTTTATTCT
* * * * * * * *
358418 CAAATAAACTTATATGATCTGAAACATTTCTTTTATGA-AAAAAAAAATGTCATA
127 -AAATAAGCTTGTATGAAC-AAAACAATTATTTTATGACAAAACAAAAGGTCATA
* * * * * * * * * ** *
358472 ACGATTTGAAATAAATAATTATTCAAAAAATCATGATTATTTGATCTAGTTTAGTAAACATATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
* ** * *
358537 ATTTTTTAAA--TTTTACTTATCAATTGCTGAAATATTAATAAATTAGTATTATTTTAGTCCAAA
66 ATTTTTTAAATCTTTTACTTATTAATTTTTG-AATATTAATAAATTAGTATTATTTTATTCTAAA
* * *
358600 TAAGCATGTATGAATAGAAACAATTATTTTA-GA-ATAGAACAAAAAGTCATA
130 TAAGCTTGTATGAACA-AAACAATTATTTTATGACA-A-AACAAAAGGTCATA
* * * * * * * * *
358651 A-GATTTAAAATAAATAATTGCTCAAATAGTCAAAACTATTTGAACTAGTTTGATAAATAGATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
* * *
358715 -TATTTTTAAATC--TT--TTATTAATATTTGAAATATTAATAGATTAGTAGTATTTTATT-TCA
66 AT-TTTTTAAATCTTTTACTTATTAATTTTTG-AATATTAATAAATTAGTATTATTTTATTCT-A
* ** * * * *
358774 AACAAATTTATATGAACAAAAGCATTTGTTTTATGACAAAACAAAAGGTTATA
128 AATAAGCTTGTATGAACAAAA-CAATTATTTTATGACAAAACAAAAGGTCATA
* * * * * * * *
358827 ATGATTTGGAATAGATAATTGTTCAAATAATCATAATTATTTTAACTGGATAGGTAAATAGAA-T
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACA-AATT
* * * * * *
358891 TATTTTTTAAATCTCTTACTTATTCATTTTTGAAATATTAATAAATTCGTTTTCTTTTATTCCAA
65 TATTTTTTAAATCTTTTACTTATTAATTTTTG-AATATTAATAAATTAGTATTATTTTATTCTAA
* *
358956 GTAAGCTAT-TATGAATTCAAAAAAACTTATTTTATGACAAAACAAAAGGTCATA
129 ATAAGCT-TGTATGAA--CAAAACAA-TTATTTTATGACAAAACAAAAGGTCATA
* * * * * * *
359010 ACGATTTGAAATAGATAACTGTTCATATAGTCTTAAATATTGGAAC-TGATTCGGTAAATAAATT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTG-TTCGGTAAACAAATT
* * * *
359074 TATTTTTTAATTCTCTTAGCTT-TTAATTTTCAT-AATATTATTATATTAGTATTATTTTATT-T
65 TATTTTTTAAATCTTTTA-CTTATTAATTTT--TGAATATTAATAAATTAGTATTATTTTATTCT
* * * ** * *
359136 CGAATAAGCTTGTATGAACAAAAATAATTCTTTTATGATGAAATAAAAGGTTATA
127 -AAATAAGCTTGTATGAAC-AAAACAATTATTTTATGACAAAACAAAAGGTCATA
* * ** * * * * * *
359191 ATAATTTGAAGTTTATAATTGTTCAAATAGTCATTGA-TGTTTGAACTAGTTTGGTAAATAGATT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCA-TAACTATTTGAACTTGTTCGGTAAACAAATT
* * * * * *
359255 TATTTTTTAAGTCTCTTACTTATTAATTTTTAAAAGATTAATAAA-TAGTATTATTGTATTCTGA
65 TATTTTTTAAATCTTTTACTTATTAATTTTT-GAATATTAATAAATTAGTATTATTTTATTCTAA
** * ** * * * *
359319 ATAAAATTGAATGCTCAAATACAATTGTTATATGATAAAACAAATGGTCATA
129 ATAAGCTTGTATGAACAAA-ACAATTATTTTATGACAAAACAAAAGGTCATA
* * * * * ** * * *
359371 ATGATTTCAAATAAATAATTGTTCATATAGTCTTAACTGTTT-AAGCTACTTCAGCAAACAGATT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAA-CTTGTTCGGTAAACAAATT
* * * * * * * *
359435 TATTTTTTAAATCTCTTAGTTATTAATTTTGGGAATATTATTAAATTACTATCAGTTTATTCCAA
65 TATTTTTTAAATCTTTTACTTATTAATTTT-TGAATATTAATAAATTAGTATTATTTTATTCTAA
* ** * * * * *
359500 ATAAGCTTATATGAATTGAAACAATTATTTTACGATAGAACAAAAGGTTACA
129 ATAAGCTTGTATGAA-CAAAACAATTATTTTATGACAAAACAAAAGGTCATA
* * * * ** * * *
359552 ATAATTTAAAATAGATAATTGTTTAAATAG---GAAC----T-AA----TTCAATAAATAGATAT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
* * * * * *
359605 ATTTTTTAAATCTCCTT-CCTATTAATTTTTGAAATTTTAATAAATTAATACTATTTTATTCCAA
66 ATTTTTTAAATCT-TTTACTTATTAATTTTTG-AATATTAATAAATTAGTATTATTTTATTCTAA
* *
359669 ATAGGCTTGTATGATGA-AAAACAATTATTTTATGAAAAAACAAAA-GT-ATGTA
129 ATAAGCTTGTATGA--ACAAAACAATTATTTTATGACAAAACAAAAGGTCA--TA
* * * * *
359721 ATGATTTGAAATATATAATTGTTCAAATGGTCATAATTATTTGAACTAGTTC-G-------ATGT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
* * * * *
359778 ATTTTTTAAATC-TCTAATATATCAATTTTTGAAGTATTAATAAAGTAATATTATTTTATATC-A
66 ATTTTTTAAATCTTTTACT-TATTAATTTTTGAA-TATTAATAAATTAGTATTATTTTAT-TCTA
** * * * ** *
359841 GGTAAGCTTTTATAAATTGAAAA-AAAAATTTTATGATAAAACAAAAGGTCATA
128 AATAAGCTTGTATGAA--CAAAACAATTATTTTATGACAAAACAAAAGGTCATA
* * * * * * *
359894 TTTATTTTAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGATAAGCAAATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
** * ** * *
359959 ATTTTTTAAAAT-TTCTTGTTTATTAATTTTCTTAATGCTAATAAATTAGTATTATTTTATTTTG
66 ATTTTTT-AAATCTT-TTACTTATTAATTTT-TGAATATTAATAAATTAGTATTATTTTATTCTA
* * * * * *
360023 AATAAGCATGCATGAGCTAAAA-ATACTATTTTATGAC-AAGCAAAAGGTCAAA
128 AATAAGCTTGTATGAAC-AAAACA-ATTATTTTATGACAAAACAAAAGGTCATA
* * ** * * * * *
360075 ACGATTTGAAATAGATAATTGTTCTAATTTTCTTATCTATTTGAA-TTAGTTTGGCAAACACATT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT-GTTCGGTAAACAAATT
* * * * * *
360139 TATTTTTTAAATC--TT--TTATT-A-----GAATATTATTAATTTA-TCAATACTTTACTCCAA
65 TATTTTTTAAATCTTTTACTTATTAATTTTTGAATATTAATAAATTAGT-ATTATTTTATTCTAA
**
360193 ATAAGCTTGTATGAACAAAAACAATTGCTTTATGACAAAA-AAATA--TCATA
129 ATAAGCTTGTATGAAC-AAAACAATTATTTTATGACAAAACAAA-AGGTCATA
* * * * * ** * * *
360243 ACGATTTGAGATAGATAATTGTTCAAAAAATCATAATTATTTGAA-TTGGTTCAATATATAGATT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT-GTTCGGTAAACAAATT
* *
360307 TAGTTTTTAAATC--TT--TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTAA
65 TATTTTTTAAATCTTTTACTTATTAATTTTTG-AATATTAATAAATTAGTATTATTTTATTCTAA
** * * ** *
360368 ATAATTTTGTATGAATAGAAATAATTATTTTATGACAAAACAAAATATAATA
129 ATAAGCTTGTATGAACA-AAACAATTATTTTATGACAAAACAAAAGGTCATA
** * * * * * * *
360420 ACAATTTGATATAGATAATAGTTCAAATGGACATGACTATTT-AAGCTTGTTTGGTGAACAAATT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAA-CTTGTTCGGTAAACAAATT
* * * *
360484 TATTTTTTAAAT-TTTCAACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTATTTTG
65 TATTTTTTAAATCTTT-TACTTATTAATTTTT-GAATATTAATAAATTAGTATTATTTTATTCTA
* * * *
360548 AATAAACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGATCATA
128 AATAAGCTTGTATGAACA-AAACAATTATTTTATGACAAAACAAAAGGTCATA
* * *
360601 ATGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTTGCTCGATAAACAAATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
* * *
360666 ATTTTTTAAATCTTTTACTTATTAATTTTTGGAAT-TTAATAAGTTGGTATTATTTCATT-TAAA
66 ATTTTTTAAATCTTTTACTTATTAATTTTT-GAATATTAATAAATTAGTATTATTTTATTCT-AA
* * * ** *
360729 ATAAGCTTTTTATGAATAGAAACAGTTGGTTTATGACAAAACAAAATGTCATA
129 ATAAGC-TTGTATGAACA-AAACAATTATTTTATGACAAAACAAAAGGTCATA
** * * * ** ** * *
360782 ACAATTTTAAATAGATAACTGTTTAAATAGTCATAACTATTTGAAAATGTTTAG-AAATATATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
** * *
360846 A-TTTTTAAAT-TTTTACTTATTAATTTTTGAAATATTAATAAATTTTTTTTATTTTATTCAAAA
66 ATTTTTTAAATCTTTTACTTATTAATTTTTG-AATATTAATAAATTAGTATTATTTTATTCTAAA
* * * * * * *
360909 TATGCTTGTATGAATAGAACCAAATGTTTTATGAGAAAACAAAATGTCATA
130 TAAGCTTGTATGAACA-AAACAATTATTTTATGACAAAACAAAAGGTCATA
* * ** *
360960 AT-ATTTTAAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACATGTTTAGTAATA-AGAT
1 ATGA-TTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAA-ACAAAT
* * *
361023 TTATTTTTTAATTCTCTTT-CTCATTAATTTCTAGAAAATATTAATAAATTAGTATTATTTTATT
64 TTATTTTTTAAATCT-TTTACTTATTAATTT-TTG--AATATTAATAAATTAGTATTATTTTATT
* * * *
361087 -TCAAATAAGCTTATATGAACTAAAACAATTGTTTTATTACAAAACAAAAGGTCACA
125 CT-AAATAAGCTTGTATGAAC-AAAACAATTATTTTATGACAAAACAAAAGGTCATA
** * * **
361143 ATGATTTGAAATAGATAATAATTCAGATAGTCATAACTATTTGAACATGTTAAGT-AACAAGATT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAA-ATT
** * * *
361207 CCTTTTTTAATTCTCTTT-CTCATTAATTTTTGGAATATTAAAAAATTAGTATTATTTTATT-TC
65 TATTTTTTAAATCT-TTTACTTATTAATTTTT-GAATATTAATAAATTAGTATTATTTTATTCT-
* * * * * *
361270 AAATAAGCTTATATGAGCTAAAACAATTGTTTTATTACAAAACAAAATGTCACA
127 AAATAAGCTTGTATGAAC-AAAACAATTATTTTATGACAAAACAAAAGGTCATA
* * * ** * * *** *
361324 ATGATTTGAAACAGATAATTATTCAAATAATTTTGACTAGTTGAACTTGTTCAAAAAACATATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
* *** * * * *
361389 ATTTTTTAAATATTCTT-CTTATTAATTGTCAAAATATTAATAAATTAATATTTTTTTAATCGAA
66 ATTTTTTAAATCTT-TTACTTATTAATT-TTTGAATATTAATAAATTAGTATTATTTTATTCTAA
* * * *
361453 ATAAACATGTATG-ACAGAAACAATTATTTTATGATAAAACAAAAAGTCAT-
129 ATAAGCTTGTATGAACA-AAACAATTATTTTATGACAAAACAAAAGGTCATA
* * * * ** ** * *
361503 ATCAATTCGAAAGAAATAATT-TTGCAAATAGTCATAAAGATTTGATA-TTGTTCAATAAATAGA
1 AT-GATTTGAAATAGATAATTGTT-CAAATAGTCATAACTATTTGA-ACTTGTTCGGTAAACAAA
* * *
361566 TTTATTTTTTAAATCTTTTACTTATTAATTGCCTT-AATATTAATAAGTTTGTATTATTTTATTC
63 TTTATTTTTTAAATCTTTTACTTATTAATT--TTTGAATATTAATAAATTAGTATTATTTTATTC
* * * * *
361630 AAAATAAGCTTGTATGAATAGAAAAAATCATTTTATGACAAAACAAAAGGTTATA
126 TAAATAAGCTTGTATGAACA-AAACAATTATTTTATGACAAAACAAAAGGTCATA
* * * * * * * ** *
361685 GTGATTTCAAATA-ATAATT-ATCAAAATAGTCAAAATTATTTAAACTTTTTCGACAAACAGATT
1 ATGATTTGAAATAGATAATTGTTC-AAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATT
* * * * * *
361748 CATTTTTTTAATCTCTTAGTTATTAATTTTCAT-AATATTAATAACTTAGCATTATTTTATT-TC
65 TATTTTTTAAATCTTTTACTTATTAATTTT--TGAATATTAATAAATTAGTATTATTTTATTCT-
** * * ** *
361811 AAATAAGCTTGTATGAATTGAAATAATTTTTTTATGACAAAGGAAAATGTCATA
127 AAATAAGCTTGTATGAA-CAAAACAATTATTTTATGACAAAACAAAAGGTCATA
** * * * * * * ** * *
361865 ACCATTTGAAGTTGATAATTGGTCAAATAGTCATGACTATTTGATCTAGTTTAGTAAGCATATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
* * * **
361930 ATTTTTTAAATTTTTTACTTATTAATTGTTAGAATATTAATAAATTGGTATTATTTTCA-TCCGA
66 ATTTTTTAAATCTTTTACTTATTAATT-TTTGAATATTAATAAATTAGTATTATTTT-ATTCTAA
* * * * * *
361994 ATAAGCTTATATGAACAAAAACTATTGTCTTATAACAAAAAAAAAAGGTCATA
129 ATAAGCTTGTATGAAC-AAAACAATTATTTTATGAC-AAAACAAAAGGTCATA
** * ** *
362047 ACAATTTGAAATAAATAATTGCACAAATAGTCATAACGATTTGAACTTGTTCGGTAAACAAATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
* * * *
362112 ATTTTTTAAATTTTTTACTTGTTAA---TTG--TCTT-AT---TT-GTATTATTTTATTCGAAAT
66 ATTTTTTAAATCTTTTACTTATTAATTTTTGAATATTAATAAATTAGTATTATTTTATTCTAAAT
* * * * * *
362167 AAGTTTGTATGAATAGAAAAAAATCATTTTATGATAAAACAAAAAGGTTATA
131 AAGCTTGTATG-A-ACAAAACAATTATTTTATGACAAAAC-AAAAGGTCATA
*** * * * * * *
362219 GCAATTTCAAATAGATAACTGTTCAAATAG---TAAC---TTG----T-TTC-TTAAATAGATTC
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
* * * ** *
362272 ATTTTTTAAATCTCTTAATTATTAATTTTTAAAATATTAATAGCTTAGTATTA-TTCATT-TCAA
66 ATTTTTTAAATCTTTTACTTATTAATTTTT-GAATATTAATAAATTAGTATTATTTTATTCT-AA
* * ** * *
362335 ATAAGCTTATATGAACCGAAATGATTTTTTTATGACAAAACAAAAGGCCATA
129 ATAAGCTTGTATGAA-CAAAACAATTATTTTATGACAAAACAAAAGGTCATA
* * * * * ** * *
362387 ACGATTTGAAA-ATGATAATTATTCAAATAGTCATGACTATTTGATCTAGTTCAATAAGCATATT
1 ATGATTTGAAATA-GATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATT
* * * * * *
362451 TATTTTTTAAATTTTTTACCTATTAATTGTTGAAATATTAATAAATTGGTATTATTTTAATCCAA
65 TATTTTTTAAATCTTTTACTTATTAATTTTTG-AATATTAATAAATTAGTATTATTTTATTCTAA
* * * * * *
362516 ATAAGCTTGTATGAACAAAAACTATTGTTTTATAATAGAACAAAAAGTCATA
129 ATAAGCTTGTATGAAC-AAAACAATTATTTTATGACAAAACAAAAGGTCATA
** * * * * * *
362568 ACAATTTGAAATAAATAATTGCTCAAATAATCATAACTATTTGAACTAGTTTGATAAA-AAGATT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAA-ATT
* * *
362632 TATTTTTTAAATC-----CGTTATTAATTTTTGAAATATTAATAGATTAGTATTATTTTATTTTG
65 TATTTTTTAAATCTTTTAC-TTATTAATTTTTG-AATATTAATAAATTAGTATTATTTTATTCTA
** * ** * * * *
362692 AGCAAACTTACATGAATGAAAAACATTTGTTTTATGACATAACAAAAGGTCATA
128 AATAAGCTTGTATGAA--CAAAACAATTATTTTATGACAAAACAAAAGGTCATA
*** * * * ** * *
362746 GCCATTTGAAAAAGATAATTGTTCAAATAGTCATAATTATTTAAACCGGTTAGGTAAATAGAA-T
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACA-AATT
* * * * * * * * * *
362810 TACTTTTTAAATCTCTTGCATATTAATTTTTTAGTATGAATAAATGCA-TTTTATTTTATTCCAA
65 TATTTTTTAAATCTTTTACTTATTAATTTTTGAATATTAATAAAT-TAGTATTATTTTATTCTAA
* * * *
362874 CTAAG-TTAGTGTGAATTGAAAA-AATTGTTTTATGAC---A-AAAA----A-A
129 ATAAGCTT-GTATGAA--CAAAACAATTATTTTATGACAAAACAAAAGGTCATA
** * * * ** *
362917 ATGATTTGAAATAGATAAAGGTTCATATAGTCTTAACTATTTGAACTAGTTTAGCAAACAAATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
* * * ** * *
362982 ATTTTTTAAATCTCTCAGTTATTAATTTTTGGAATATTTTTATATTAGTATTATTTTATAT-TGA
66 ATTTTTTAAATCTTTTACTTATTAATTTTT-GAATATTAATAAATTAGTATTATTTTAT-TCTAA
* * * * * *
363046 ATAAGCTTGTATAAATAGAAATAATTTTTTTATGACAGAACAAAAGGTTATA
129 ATAAGCTTGTATGAACA-AAACAATTATTTTATGACAAAACAAAAGGTCATA
* * * * * ** *
363098 ACT-ATTTGAAGTATACAATTATTCAAATAGTCATAACTATTTAAACCGGTTCGGTAAATAAATT
1 A-TGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATT
* * * *
363162 TATTTTTTAAATC---T-CTTATTAATTTTTGAAAGATTAATAAATTACTATTATTTTATTTTGA
65 TATTTTTTAAATCTTTTACTTATTAATTTTTG-AATATTAATAAATTAGTATTATTTTATTCTAA
* * * ** * * * *
363223 ATAAACTTTGTATAATAAAAAACAATTGCTATAT-ATCCAAACAAAATGTTATA
129 ATAAGC-TTGTATGA-ACAAAACAATTATTTTATGA-CAAAACAAAAGGTCATA
* * * * * * * *
363276 ACGATTTAAAATAGATAATTGTTGAAATGGCCATAATTATTTGAAC-TGATTTGGTAAACCAATT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTG-TTCGGTAAACAAATT
* * * * *
363340 TACTTTTTAAAT-TGCTTACTTATTAATTTTTGAAATATTAGTAAATTAGTATTATTTTATTTTG
65 TATTTTTTAAATCT-TTTACTTATTAATTTTTG-AATATTAATAAATTAGTATTATTTTATTCTA
* ** *
363404 AATAAGCTTTTATGAATTGAAACAATTGTTTTATGACAAAACAAAAGGTCATA
128 AATAAGCTTGTATGAA-CAAAACAATTATTTTATGACAAAACAAAAGGTCATA
* * * * * * *
363457 ATGATTTTAAATAGACAATTGTTCAAATAAGT-ATAACTATTTAAATTTATTTGGTAAACTAATT
1 ATGATTTGAAATAGATAATTGTTCAAAT-AGTCATAACTATTTGAACTTGTTCGGTAAACAAATT
* * * * * *
363521 TATTTTTTTAAA-CTATTGCTTATTAATTTTTGAAATATTAAGAAATTAGTATTCTTTTATTTTG
65 TA-TTTTTTAAATCTTTTACTTATTAATTTTTG-AATATTAATAAATTAGTATTATTTTATTCTA
* * * * * *
363585 GATAAGCTTTTATAAACTGAAACAATTGTTTTAT-ATCAAAAGAAAAAGGTCATA
128 AATAAGCTTGTATGAAC-AAAACAATTATTTTATGA-CAAAA-CAAAAGGTCATA
* * * * * * *
363639 ATGATTTTAAATAAATAATTGTTCAAATAGTAATCACTATTTGAACTTGTTTGATAAACAGATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
* * * * * *
363704 ATTTTTTCAAA-CTTTTCCTTATTAATTTTTCAAATGTTAATAAATTTGGATTATTTTATT-TCG
66 ATTTTTT-AAATCTTTTACTTATTAATTTTT-GAATATTAATAAATTAGTATTATTTTATTCT-A
* * ** * * * * * *
363767 AATAAGATTGTAAGATATGAAACAAATATTTTCTAACTAAACAAAAGGTTAGA
128 AATAAGCTTGTATGA-ACAAAACAATTATTTTATGACAAAACAAAAGGTCATA
* * * * ** * * *
363820 ATGATTTAAAATATATAATTATTCTAATAGTTTTAACTATTTGAACTGGTTCGGCAAACACATTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
*
363885 ATTTTTTAAAT-TTCTTACTTATTAATTTTTGAAATGTTAATAAATTAGTATTATTTTATT-TCA
66 ATTTTTTAAATCTT-TTACTTATTAATTTTTG-AATATTAATAAATTAGTATTATTTTATTCT-A
* * *
363948 AATAAGCTTGTATGATAAAAAACAATTATGTTATGACAAAACAAAAGATCATA
128 AATAAGCTTGTATGA-ACAAAACAATTATTTTATGACAAAACAAAAGGTCATA
* ** * * * * ** ****
364001 ATGATTTGAAATAAATAATCATTCATATAGTC-TTACTATTTGAAATGGTT-TATCAATTTGATT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGT-AAACAAATT
* ** * * ** * * *
364064 TATTTTTT-AATTTTCTTGGTTATTAAGTGTCAAAGTATTATTAAATTAGTATTATTTTATTTTG
65 TATTTTTTAAATCTT-TTACTTATTAATTTTTGAA-TATTAATAAATTAGTATTATTTTATTCTA
** * * * * * *
364128 AATAAAATAGTATGAATAGAACCAATTGTTTGT-TGACAAAATAAAAGGTTATA
128 AATAAGCTTGTATGAACA-AAACAATTATTT-TATGACAAAACAAAAGGTCATA
* * * * *** * **
364181 ATGAATTGGAATAGATAATTATTCAAATAGTCAAAACTATTTGAAAGGGTTTGGTAAACAGTTTT
1 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
* * * **
364246 ACTTTTTAAATCTCTTACTGATTAATTTTCCAAGTATTAATAAA
66 ATTTTTTAAATCTTTTACTTATTAATTTTTGAA-TATTAATAAA
364290 AGGTTAGAAT
Statistics
Matches: 6109, Mismatches: 1321, Indels: 705
0.75 0.16 0.09
Matches are distributed among these distances:
160 29 0.00
161 3 0.00
162 1 0.00
163 2 0.00
165 4 0.00
166 47 0.01
167 84 0.01
168 116 0.02
169 199 0.03
170 31 0.01
171 116 0.02
172 101 0.02
173 143 0.02
174 41 0.01
175 230 0.04
176 148 0.02
177 241 0.04
178 528 0.09
179 203 0.03
180 793 0.13
181 1771 0.29
182 855 0.14
183 404 0.07
184 15 0.00
185 4 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (179 bp):
ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAAATTT
ATTTTTTAAATCTTTTACTTATTAATTTTTGAATATTAATAAATTAGTATTATTTTATTCTAAAT
AAGCTTGTATGAACAAAACAATTATTTTATGACAAAACAAAAGGTCATA
Done.