Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167853.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_123, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 76928
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Found at i:89 original size:33 final size:33
Alignment explanation
Indices: 8--70 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
1 TGTAGGG
8 TTAGTTAGG-TCATTTTAGTTTGTTTATTGAGAA
1 TTAGTT-GGATCATTTTAGTTTGTTTATTGAGAA
*
41 TTAGTTGGAACATTTTAGTTT-TTTATTGAG
1 TTAGTTGGATCATTTTAGTTTGTTTATTGAG
71 GGCATATTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 11 0.39
33 17 0.61
ACGTcount: A:0.24, C:0.03, G:0.21, T:0.52
Consensus pattern (33 bp):
TTAGTTGGATCATTTTAGTTTGTTTATTGAGAA
Found at i:2266 original size:29 final size:29
Alignment explanation
Indices: 2232--2296 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
2222 AATTAGGTAA
*
2232 AAATTAAAAGTTAAA-AGTTATTTAGATAC
1 AAATTAAAAGATAAATA-TTATTTAGATAC
2261 AAATTAAAAGATAAATATTATTTAGATAC
1 AAATTAAAAGATAAATATTATTTAGATAC
2290 -AATTAAA
1 AAATTAAA
2297 GTTTAATGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 7 0.21
29 26 0.76
30 1 0.03
ACGTcount: A:0.55, C:0.03, G:0.08, T:0.34
Consensus pattern (29 bp):
AAATTAAAAGATAAATATTATTTAGATAC
Found at i:2338 original size:28 final size:29
Alignment explanation
Indices: 2249--2342 Score: 88
Period size: 28 Copynumber: 3.3 Consensus size: 29
2239 AAGTTAAAAG
* *
2249 TTATTTAGATACAAATTAAAAGATAA--AT
1 TTATTTAAATAC-AATTAAAATATAATGAT
* * *
2277 ATTATTTAGATACAATTAAAGTTTAATGAT
1 -TTATTTAAATACAATTAAAATATAATGAT
2307 TTATTTAAATACAA-TAAAATAT-ATGAGT
1 TTATTTAAATACAATTAAAATATAATGA-T
2335 TTATTTAA
1 TTATTTAA
2343 CTAAAAGAGT
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
27 4 0.07
28 25 0.45
29 25 0.45
30 2 0.04
ACGTcount: A:0.48, C:0.03, G:0.07, T:0.41
Consensus pattern (29 bp):
TTATTTAAATACAATTAAAATATAATGAT
Found at i:2744 original size:24 final size:26
Alignment explanation
Indices: 2699--2747 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
2689 ATAAAAAATT
*
2699 ATTATTAAAAAAATCATAAATTTTAAA
1 ATTAATAAAAAAAT-ATAAATTTTAAA
2726 ATTAATAAAAAAAT-T-AATTTTA
1 ATTAATAAAAAAATATAAATTTTA
2748 TCATTTTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 7 0.33
25 1 0.05
27 13 0.62
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (26 bp):
ATTAATAAAAAAATATAAATTTTAAA
Found at i:7991 original size:30 final size:30
Alignment explanation
Indices: 7955--8023 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
7945 GCAGGTGTTG
7955 CCCATAACTGGAACAAACTAAGCCTTATAT
1 CCCATAACTGGAACAAACTAAGCCTTATAT
*** *
7985 CCCATAACTGTTCCATACTAAGCCTTATAT
1 CCCATAACTGGAACAAACTAAGCCTTATAT
8015 CCCATAACT
1 CCCATAACT
8024 CTGGGGCAGG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.35, C:0.30, G:0.07, T:0.28
Consensus pattern (30 bp):
CCCATAACTGGAACAAACTAAGCCTTATAT
Found at i:14031 original size:17 final size:18
Alignment explanation
Indices: 13999--14032 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13989 GATTTATCAA
*
13999 TTTTTAAATTTGTTTTAG
1 TTTTTAAATTTATTTTAG
14017 TTTTTAAA-TTATTTTA
1 TTTTTAAATTTATTTTA
14033 ATATAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (18 bp):
TTTTTAAATTTATTTTAG
Found at i:14042 original size:21 final size:21
Alignment explanation
Indices: 14018--14062 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
14008 TTGTTTTAGT
*
14018 TTTTAAAT-TATTTTAATATAA
1 TTTTAAATATATTTAAATA-AA
*
14039 TTTTTAATATATTTAAATAAA
1 TTTTAAATATATTTAAATAAA
14060 TTT
1 TTT
14063 AGATATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TTTTAAATATATTTAAATAAA
Found at i:14045 original size:22 final size:21
Alignment explanation
Indices: 14017--14062 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
14007 TTTGTTTTAG
*
14017 TTTTTAA-ATTATTTTAATATAA
1 TTTTTAATA-TATTTAAATA-AA
14039 TTTTTAATATATTTAAATAAA
1 TTTTTAATATATTTAAATAAA
14060 TTT
1 TTT
14063 AGATATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 5 0.23
22 16 0.73
23 1 0.05
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTTTAATATATTTAAATAAA
Found at i:14121 original size:11 final size:9
Alignment explanation
Indices: 14088--14130 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
14078 ATTTTTATTT
14088 TATAAAAAA
1 TATAAAAAA
*
14097 TTTAAAAAA
1 TATAAAAAA
14106 TATAAAAAA
1 TATAAAAAA
*
14115 CTAATAAAATA
1 -T-ATAAAAAA
14126 TATAA
1 TATAA
14131 TAAAGTTAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
9 20 0.69
10 2 0.07
11 7 0.24
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (9 bp):
TATAAAAAA
Found at i:14225 original size:22 final size:22
Alignment explanation
Indices: 14199--14250 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
14189 TTATCTAATT
14199 TTAAATTAAATCAAATAAAAAA
1 TTAAATTAAATCAAATAAAAAA
* * * *
14221 TTAAATTGATTCGAATAAAATA
1 TTAAATTAAATCAAATAAAAAA
14243 TTATAATT
1 TTA-AATT
14251 TTTAATTAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 21 0.84
23 4 0.16
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.37
Consensus pattern (22 bp):
TTAAATTAAATCAAATAAAAAA
Found at i:19431 original size:2 final size:2
Alignment explanation
Indices: 19426--19454 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
19416 ACACACATAA
19426 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
19455 CAAGGGGCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24909 original size:29 final size:31
Alignment explanation
Indices: 24849--24912 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
24839 TATTTATCGT
* * *
24849 TTTTTATATAAAAATTATATATTATAATTTA
1 TTTTGATATAAAAAATATAAATTATAATTTA
24880 TTTTGATATAAAAAATATAAATTA-AA-TTA
1 TTTTGATATAAAAAATATAAATTATAATTTA
24909 TTTT
1 TTTT
24913 TTATCGTACT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 7 0.23
30 2 0.07
31 21 0.70
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (31 bp):
TTTTGATATAAAAAATATAAATTATAATTTA
Found at i:34941 original size:15 final size:15
Alignment explanation
Indices: 34917--34955 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
34907 ATACGTAATA
34917 AAAAATAAAAATT-T
1 AAAAATAAAAATTAT
*
34931 AAAACTAAAAATTAT
1 AAAAATAAAAATTAT
34946 AAAAATAAAA
1 AAAAATAAAA
34956 GAAAACTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAAATAAAAATTAT
Found at i:35036 original size:20 final size:20
Alignment explanation
Indices: 34994--35038 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
34984 AATCTCATTG
* * **
34994 AATTTAAAATATTAATTTTT
1 AATTTAAAATATCAAATAAT
35014 AATTTAAAATATCAAATAAT
1 AATTTAAAATATCAAATAAT
35034 AATTT
1 AATTT
35039 TATTAAAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
AATTTAAAATATCAAATAAT
Found at i:35314 original size:28 final size:27
Alignment explanation
Indices: 35264--35316 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
35254 TATAAGTAAA
* **
35264 ATTTTATAACTTTTAATGTAATTTTTG
1 ATTTTATAACATTTAATAAAATTTTTG
35291 ATTTTCATAACATTTAATAAAATTTT
1 ATTTT-ATAACATTTAATAAAATTTT
35317 GGTAACCTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 5 0.23
28 17 0.77
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.55
Consensus pattern (27 bp):
ATTTTATAACATTTAATAAAATTTTTG
Found at i:35380 original size:21 final size:22
Alignment explanation
Indices: 35291--35405 Score: 73
Period size: 21 Copynumber: 5.5 Consensus size: 22
35281 GTAATTTTTG
* * *
35291 ATTTTCATAACATT-TAATAAA
1 ATTTTGATAACATTATGATATA
* * *
35312 ATTTTGGTAAC-CTATGATACA
1 ATTTTGATAACATTATGATATA
* *
35333 ATTTTGATAACATT-CGACATTA
1 ATTTTGATAACATTATGATA-TA
35355 A-TTTGATAAC-TTATGATATA
1 ATTTTGATAACATTATGATATA
* *
35375 ATTTTGGTGATCATTA--ATATA
1 ATTTTGAT-AACATTATGATATA
35396 ATTTTGATAA
1 ATTTTGATAA
35406 TTGTTTATAA
Statistics
Matches: 71, Mismatches: 16, Indels: 15
0.70 0.16 0.15
Matches are distributed among these distances:
20 7 0.10
21 56 0.79
22 5 0.07
23 3 0.04
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (22 bp):
ATTTTGATAACATTATGATATA
Found at i:35402 original size:42 final size:41
Alignment explanation
Indices: 35291--35405 Score: 108
Period size: 42 Copynumber: 2.7 Consensus size: 41
35281 GTAATTTTTG
* * *
35291 ATTTTCATAACATTTAATAAAATTTTGGTAACCTATGATACA
1 ATTTTGATAACA-TTAATATAATTTTGATAACCTATGATACA
* *
35333 ATTTTGATAACATTCGACAT-TAA-TTTGATAACTTATGATATA
1 ATTTTGATAACATT--A-ATATAATTTTGATAACCTATGATACA
* *
35375 ATTTTGGTGATCATTAATATAATTTTGATAA
1 ATTTTGAT-AACATTAATATAATTTTGATAA
35406 TTGTTTATAA
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
40 2 0.03
41 6 0.10
42 42 0.70
43 8 0.13
44 2 0.03
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (41 bp):
ATTTTGATAACATTAATATAATTTTGATAACCTATGATACA
Found at i:35848 original size:22 final size:22
Alignment explanation
Indices: 35823--35981 Score: 97
Period size: 22 Copynumber: 7.2 Consensus size: 22
35813 AGCATTGAAG
* *
35823 TACTACTAATTTATAAATAATT
1 TACTACTAAATTATTAATAATT
* * * *
35845 TACTATTAAGTTATGAATTATT
1 TACTACTAAATTATTAATAATT
* * *
35867 TACCAATAAATTATTAATGATT
1 TACTACTAAATTATTAATAATT
* *
35889 TACTATTAAATTATTGATAATT
1 TACTACTAAATTATTAATAATT
* *
35911 TATTA-TAAAGTTA-CAACTAATT
1 TACTACTAAA-TTATTAA-TAATT
** * * *
35933 TTTTATTAATTTGTTAATAATT
1 TACTACTAAATTATTAATAATT
* *
35955 TACTACAAAATTATCAATAATT
1 TACTACTAAATTATTAATAATT
*
35977 AACTA
1 TACTA
35982 ATTTATTACA
Statistics
Matches: 105, Mismatches: 28, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
21 5 0.05
22 95 0.90
23 5 0.05
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.46
Consensus pattern (22 bp):
TACTACTAAATTATTAATAATT
Found at i:36315 original size:16 final size:17
Alignment explanation
Indices: 36282--36322 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
36272 TTTTAAAAAC
* *
36282 TAAAAAAATTATGGATT
1 TAAAAAAAATATGAATT
36299 TAAAAAAAAT-TGAATT
1 TAAAAAAAATATGAATT
36315 TAAAAAAA
1 TAAAAAAA
36323 TTTAAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 13 0.59
17 9 0.41
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.29
Consensus pattern (17 bp):
TAAAAAAAATATGAATT
Found at i:36319 original size:15 final size:15
Alignment explanation
Indices: 36282--36324 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
36272 TTTTAAAAAC
*
36282 TAAAAAAATTATGGATT
1 TAAAAAAA-T-TGAATT
36299 TAAAAAAAATTGAATT
1 T-AAAAAAATTGAATT
36315 TAAAAAAATT
1 TAAAAAAATT
36325 TAAAAAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 9 0.38
16 6 0.25
17 2 0.08
18 7 0.29
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (15 bp):
TAAAAAAATTGAATT
Found at i:36756 original size:10 final size:9
Alignment explanation
Indices: 36695--36790 Score: 50
Period size: 10 Copynumber: 9.8 Consensus size: 9
36685 ATAAACTTGT
36695 AATTTTTGTA
1 AATTTTT-TA
*
36705 AATTTTTAA
1 AATTTTTTA
*
36714 AGATTTTTCA
1 A-ATTTTTTA
*
36724 GATTTTTTGA
1 AATTTTTT-A
36734 AATTTTATT-
1 AATTTT-TTA
36743 AATTTTTCTA
1 AATTTTT-TA
**
36753 AATTTTAAAA
1 AATTTT-TTA
*
36763 AAGTATTCTTAA
1 AA-T-TT-TTTA
36775 AATTTTTTA
1 AATTTTTTA
36784 AATTTTT
1 AATTTTT
36791 AATGTAATTT
Statistics
Matches: 68, Mismatches: 9, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
8 1 0.01
9 25 0.37
10 31 0.46
11 4 0.06
12 6 0.09
13 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.56
Consensus pattern (9 bp):
AATTTTTTA
Found at i:36816 original size:26 final size:26
Alignment explanation
Indices: 36777--36842 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 26
36767 ATTCTTAAAA
36777 TTTTTTAAATTTTTAATGTA-ATTTAAT
1 TTTTTTAAA-TTTTAA-GTATATTTAAT
* * *
36804 TTTTTTTAATTTTCAGTATTTTTAAT
1 TTTTTTAAATTTTAAGTATATTTAAT
* *
36830 TTTTGTGAATTTT
1 TTTTTTAAATTTT
36843 TTTTGTTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
25 3 0.09
26 22 0.67
27 8 0.24
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.67
Consensus pattern (26 bp):
TTTTTTAAATTTTAAGTATATTTAAT
Found at i:37204 original size:17 final size:17
Alignment explanation
Indices: 37184--37293 Score: 85
Period size: 17 Copynumber: 6.2 Consensus size: 17
37174 AAATTCCCAT
37184 TTTTTAATTTTTTTTAA
1 TTTTTAATTTTTTTTAA
* *
37201 TTTTGAGTTTTTTTTAA
1 TTTTTAATTTTTTTTAA
*
37218 TTTTAAAATTTTTTTATAA
1 TTTT-TAATTTTTTT-TAA
** * **
37237 TTTTTAAAATATTTTGG
1 TTTTTAATTTTTTTTAA
**
37254 TTTTCATAATTTTTTGAAA
1 TTTT--TAATTTTTTTTAA
*
37273 TATTTAATTTTTTTTAA
1 TTTTTAATTTTTTTTAA
37290 TTTT
1 TTTT
37294 AAAAAAATTA
Statistics
Matches: 68, Mismatches: 21, Indels: 8
0.70 0.22 0.08
Matches are distributed among these distances:
17 38 0.56
18 14 0.21
19 16 0.24
ACGTcount: A:0.27, C:0.01, G:0.05, T:0.67
Consensus pattern (17 bp):
TTTTTAATTTTTTTTAA
Found at i:37231 original size:20 final size:21
Alignment explanation
Indices: 37208--37251 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 21
37198 TAATTTTGAG
37208 TTTTTTT-TAA-TTTT-AAAA
1 TTTTTTTATAATTTTTAAAAA
37226 TTTTTTTATAATTTTTAAAATA
1 TTTTTTTATAATTTTTAAAA-A
37248 TTTT
1 TTTT
37252 GGTTTTCATA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 7 0.32
19 3 0.14
20 4 0.18
21 3 0.14
22 5 0.23
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTTTTTATAATTTTTAAAAA
Found at i:37283 original size:26 final size:26
Alignment explanation
Indices: 37228--37283 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
37218 TTTTAAAATT
* **
37228 TTTTTATAATTTTTAAAATATTTTGG
1 TTTTCATAATTTTTAAAATATTTTAA
*
37254 TTTTCATAATTTTTTGAAATA-TTTAA
1 TTTTCATAA-TTTTTAAAATATTTTAA
37280 TTTT
1 TTTT
37284 TTTTAATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.62
Consensus pattern (26 bp):
TTTTCATAATTTTTAAAATATTTTAA
Found at i:37284 original size:27 final size:27
Alignment explanation
Indices: 37227--37293 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
37217 ATTTTAAAAT
**
37227 TTTTTTATAA-TTTTTAAAATATTTTG
1 TTTTTTATAATTTTTTAAAATATTTAA
* * *
37253 GTTTTCATAATTTTTTGAAATATTTAA
1 TTTTTTATAATTTTTTAAAATATTTAA
*
37280 TTTTTTTTAATTTT
1 TTTTTTATAATTTT
37294 AAAAAAATTA
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
26 8 0.25
27 24 0.75
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.66
Consensus pattern (27 bp):
TTTTTTATAATTTTTTAAAATATTTAA
Found at i:37293 original size:26 final size:26
Alignment explanation
Indices: 37224--37298 Score: 69
Period size: 27 Copynumber: 2.8 Consensus size: 26
37214 TTAATTTTAA
37224 AATTTTTTTATAATTTTTAAAATATTT
1 AATTTTTTT-TAATTTTTAAAATATTT
*** ** *
37251 TGGTTTTCATAATTTTTTGAAATATTT
1 AATTTTTTTTAA-TTTTTAAAATATTT
*
37278 AATTTTTTTTAATTTTAAAAA
1 AATTTTTTTTAATTTTTAAAA
37299 AATTAGAAAA
Statistics
Matches: 34, Mismatches: 13, Indels: 3
0.68 0.26 0.06
Matches are distributed among these distances:
26 10 0.29
27 24 0.71
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.60
Consensus pattern (26 bp):
AATTTTTTTTAATTTTTAAAATATTT
Found at i:39998 original size:30 final size:30
Alignment explanation
Indices: 39945--40035 Score: 123
Period size: 30 Copynumber: 3.1 Consensus size: 30
39935 AATTAGGTAA
*
39945 AAATTAAAAGTTAAA-AGTTATTTAGATAC
1 AAATTAAAAGTTAAATATTTATTTAGATAC
*
39974 AAATTAAAAGATAAATATTTATTTAGATAC
1 AAATTAAAAGTTAAATATTTATTTAGATAC
* *
40004 AAATT-AAAGTTTAATGATTTATTTAAATAC
1 AAATTAAAAGTTAAAT-ATTTATTTAGATAC
40034 AA
1 AA
40036 TAAAAATATA
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
29 22 0.40
30 33 0.60
ACGTcount: A:0.52, C:0.03, G:0.08, T:0.37
Consensus pattern (30 bp):
AAATTAAAAGTTAAATATTTATTTAGATAC
Found at i:45711 original size:29 final size:31
Alignment explanation
Indices: 45650--45713 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
45640 TATTTATCGT
* * *
45650 TTTTTATATAAAAATTATATATTATAATATA
1 TTTTGATATAAAAAATATAAATTATAATATA
45681 TTTTGATATAAAAAATATAAATTA-AAT-TA
1 TTTTGATATAAAAAATATAAATTATAATATA
45710 TTTT
1 TTTT
45714 TTATCGTACT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 6 0.20
30 3 0.10
31 21 0.70
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (31 bp):
TTTTGATATAAAAAATATAAATTATAATATA
Found at i:45850 original size:7 final size:7
Alignment explanation
Indices: 45838--45869 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
45828 TATCTATTTT
45838 TATTTAC
1 TATTTAC
45845 TATTTAC
1 TATTTAC
45852 TATTTAC
1 TATTTAC
45859 TATTTA-
1 TATTTAC
45865 TATTT
1 TATTT
45870 TATATAGCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.20
7 20 0.80
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.62
Consensus pattern (7 bp):
TATTTAC
Found at i:45871 original size:14 final size:13
Alignment explanation
Indices: 45831--45869 Score: 60
Period size: 14 Copynumber: 2.9 Consensus size: 13
45821 CAGCTCCTAT
*
45831 CTATTTTTATTTA
1 CTATTTATATTTA
45844 CTATTTACTATTTA
1 CTATTTA-TATTTA
45858 CTATTTATATTT
1 CTATTTATATTT
45870 TATATAGCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.64
Consensus pattern (13 bp):
CTATTTATATTTA
Found at i:55754 original size:14 final size:15
Alignment explanation
Indices: 55737--55775 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
55727 ATACGTAATA
55737 AAAAATAAAAATT-T
1 AAAAATAAAAATTAT
55751 AAAACA-AAAAATTAT
1 AAAA-ATAAAAATTAT
55766 AAAAATAAAA
1 AAAAATAAAA
55776 GAAAACTCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.21
Consensus pattern (15 bp):
AAAAATAAAAATTAT
Found at i:56121 original size:27 final size:26
Alignment explanation
Indices: 56085--56137 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
56075 TATAAGTAAA
* **
56085 ATTTTATAACTTTTAATGTAATTTTG
1 ATTTTATAACATTTAATAAAATTTTG
56111 ATTTTCATAACATTTAATAAAATTTTG
1 ATTTT-ATAACATTTAATAAAATTTTG
56138 GTAACCTATG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.53
Consensus pattern (26 bp):
ATTTTATAACATTTAATAAAATTTTG
Found at i:56200 original size:21 final size:22
Alignment explanation
Indices: 56111--56225 Score: 73
Period size: 21 Copynumber: 5.5 Consensus size: 22
56101 TGTAATTTTG
* * *
56111 ATTTTCATAACATT-TAATAAA
1 ATTTTGATAACATTATGATATA
* * *
56132 ATTTTGGTAAC-CTATGATACA
1 ATTTTGATAACATTATGATATA
* *
56153 ATTTTGATAACATT-CGACATTA
1 ATTTTGATAACATTATGATA-TA
56175 A-TTTGATAAC-TTATGATATA
1 ATTTTGATAACATTATGATATA
* *
56195 ATTTTGGTGATCATTA--ATATA
1 ATTTTGAT-AACATTATGATATA
56216 ATTTTGATAA
1 ATTTTGATAA
56226 TTGTTTATAA
Statistics
Matches: 71, Mismatches: 16, Indels: 15
0.70 0.16 0.15
Matches are distributed among these distances:
20 7 0.10
21 56 0.79
22 5 0.07
23 3 0.04
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (22 bp):
ATTTTGATAACATTATGATATA
Found at i:56222 original size:42 final size:41
Alignment explanation
Indices: 56111--56225 Score: 108
Period size: 42 Copynumber: 2.7 Consensus size: 41
56101 TGTAATTTTG
* * *
56111 ATTTTCATAACATTTAATAAAATTTTGGTAACCTATGATACA
1 ATTTTGATAACA-TTAATATAATTTTGATAACCTATGATACA
* *
56153 ATTTTGATAACATTCGACAT-TAA-TTTGATAACTTATGATATA
1 ATTTTGATAACATT--A-ATATAATTTTGATAACCTATGATACA
* *
56195 ATTTTGGTGATCATTAATATAATTTTGATAA
1 ATTTTGAT-AACATTAATATAATTTTGATAA
56226 TTGTTTATAA
Statistics
Matches: 60, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
40 2 0.03
41 6 0.10
42 42 0.70
43 8 0.13
44 2 0.03
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (41 bp):
ATTTTGATAACATTAATATAATTTTGATAACCTATGATACA
Found at i:56670 original size:22 final size:22
Alignment explanation
Indices: 56645--56803 Score: 97
Period size: 22 Copynumber: 7.2 Consensus size: 22
56635 AGCATTGAAG
* *
56645 TACTACTAATTTATAAATAATT
1 TACTACTAAATTATTAATAATT
* * * *
56667 TACTATTAAGTTATGAATTATT
1 TACTACTAAATTATTAATAATT
* * *
56689 TACCAATAAATTATTAATGATT
1 TACTACTAAATTATTAATAATT
* *
56711 TACTATTAAATTATTGATAATT
1 TACTACTAAATTATTAATAATT
* *
56733 TATTA-TAAAGTTA-CAACTAATT
1 TACTACTAAA-TTATTAA-TAATT
** * * *
56755 TTTTATTAATTTGTTAATAATT
1 TACTACTAAATTATTAATAATT
* *
56777 TACTACAAAATTATCAATAATT
1 TACTACTAAATTATTAATAATT
*
56799 AACTA
1 TACTA
56804 ATTTATTACA
Statistics
Matches: 105, Mismatches: 28, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
21 5 0.05
22 95 0.90
23 5 0.05
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.46
Consensus pattern (22 bp):
TACTACTAAATTATTAATAATT
Found at i:56840 original size:22 final size:22
Alignment explanation
Indices: 56813--56873 Score: 77
Period size: 22 Copynumber: 2.8 Consensus size: 22
56803 AATTTATTAC
* * *
56813 AAATTATCATTGATTTATAAGT
1 AAATTATCACTGATTTAGAACT
*
56835 AAATTAGCACTGATTTAGAACT
1 AAATTATCACTGATTTAGAACT
*
56857 AAGTTATCACTGATTTA
1 AAATTATCACTGATTTA
56874 ATATTATATT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.39
Consensus pattern (22 bp):
AAATTATCACTGATTTAGAACT
Found at i:57124 original size:17 final size:18
Alignment explanation
Indices: 57104--57147 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
57094 TTTTAAAAAC
*
57104 TAAAAAAATTA-TGGATT
1 TAAAAAAATTATTGAATT
*
57121 TAAAAAAA-AATTGAATT
1 TAAAAAAATTATTGAATT
57138 TAAAAAAATT
1 TAAAAAAATT
57148 TAAAAAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 1 0.05
17 21 0.95
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (18 bp):
TAAAAAAATTATTGAATT
Found at i:57574 original size:10 final size:9
Alignment explanation
Indices: 57513--57616 Score: 59
Period size: 10 Copynumber: 10.8 Consensus size: 9
57503 ATAAACTTGT
57513 AATTTTTGTA
1 AATTTTT-TA
*
57523 AATTTTTAA
1 AATTTTTTA
*
57532 AGATTTTTCA
1 A-ATTTTTTA
*
57542 GATTTTTTGA
1 AATTTTTT-A
57552 AATTTTATT-
1 AATTTT-TTA
57561 AATTTTTCTA
1 AATTTTT-TA
**
57571 AATTTTAAAA
1 AATTTT-TTA
*
57581 AAGTATTCTTAA
1 AA-T-TT-TTTA
57593 AATTTTTTA
1 AATTTTTTA
57602 AA-TTTTTA
1 AATTTTTTA
57610 AATTTTT
1 AATTTTT
57617 AATGTAATTT
Statistics
Matches: 75, Mismatches: 9, Indels: 21
0.71 0.09 0.20
Matches are distributed among these distances:
8 9 0.12
9 24 0.32
10 31 0.41
11 4 0.05
12 6 0.08
13 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.57
Consensus pattern (9 bp):
AATTTTTTA
Found at i:57642 original size:26 final size:26
Alignment explanation
Indices: 57604--57668 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 26
57594 ATTTTTTAAA
57604 TTTTTAAATTTTTAATGTA-ATTTAATT
1 TTTTTAAA-TTTTAA-GTATATTTAATT
* * *
57631 TTTTTTAATTTTCAGTATTTTTAATT
1 TTTTTAAATTTTAAGTATATTTAATT
* *
57657 TTTGTGAATTTT
1 TTTTTAAATTTT
57669 TTTTGTTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
25 3 0.09
26 22 0.69
27 7 0.22
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (26 bp):
TTTTTAAATTTTAAGTATATTTAATT
Found at i:57793 original size:18 final size:18
Alignment explanation
Indices: 57770--57821 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 18
57760 AAGATTTTAG
57770 TTTTTTATTTTTTAAGAT
1 TTTTTTATTTTTTAAGAT
* *
57788 TTTTTTAATTTTGTAGGAT
1 TTTTTT-ATTTTTTAAGAT
57807 TTTTCTTATTATTTT
1 TTTT-TTATT-TTTT
57822 CAAAAATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
18 6 0.21
19 17 0.61
20 5 0.18
ACGTcount: A:0.19, C:0.02, G:0.08, T:0.71
Consensus pattern (18 bp):
TTTTTTATTTTTTAAGAT
Found at i:58031 original size:17 final size:17
Alignment explanation
Indices: 58011--58120 Score: 85
Period size: 17 Copynumber: 6.2 Consensus size: 17
58001 AAATTCCCAT
58011 TTTTTAATTTTTTTTAA
1 TTTTTAATTTTTTTTAA
* *
58028 TTTTGAGTTTTTTTTAA
1 TTTTTAATTTTTTTTAA
*
58045 TTTTAAATTTTTTTTATAA
1 TTTTTAA-TTTTTTT-TAA
** * **
58064 TTTTTAAAATATTTTGG
1 TTTTTAATTTTTTTTAA
**
58081 TTTTCATAATTTTTTGAAA
1 TTTT--TAATTTTTTTTAA
*
58100 TATTTAATTTTTTTTAA
1 TTTTTAATTTTTTTTAA
58117 TTTT
1 TTTT
58121 AAAAAAATTA
Statistics
Matches: 68, Mismatches: 21, Indels: 8
0.70 0.22 0.08
Matches are distributed among these distances:
17 39 0.57
18 11 0.16
19 18 0.26
ACGTcount: A:0.26, C:0.01, G:0.05, T:0.68
Consensus pattern (17 bp):
TTTTTAATTTTTTTTAA
Found at i:58110 original size:26 final size:26
Alignment explanation
Indices: 58055--58110 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
58045 TTTTAAATTT
* **
58055 TTTTTATAATTTTTAAAATATTTTGG
1 TTTTCATAATTTTTAAAATATTTTAA
*
58081 TTTTCATAATTTTTTGAAATA-TTTAA
1 TTTTCATAA-TTTTTAAAATATTTTAA
58107 TTTT
1 TTTT
58111 TTTTAATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.62
Consensus pattern (26 bp):
TTTTCATAATTTTTAAAATATTTTAA
Found at i:58111 original size:27 final size:27
Alignment explanation
Indices: 58054--58120 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
58044 ATTTTAAATT
**
58054 TTTTTTATAA-TTTTTAAAATATTTTG
1 TTTTTTATAATTTTTTAAAATATTTAA
* * *
58080 GTTTTCATAATTTTTTGAAATATTTAA
1 TTTTTTATAATTTTTTAAAATATTTAA
*
58107 TTTTTTTTAATTTT
1 TTTTTTATAATTTT
58121 AAAAAAATTA
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
26 8 0.25
27 24 0.75
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.66
Consensus pattern (27 bp):
TTTTTTATAATTTTTTAAAATATTTAA
Found at i:60808 original size:30 final size:30
Alignment explanation
Indices: 60772--60867 Score: 108
Period size: 30 Copynumber: 3.2 Consensus size: 30
60762 AAATTAAAAG
60772 TTATTTAGATACAAATTAAAAGATAAAT-AT
1 TTATTTAGATACAAATT-AAAGATAAATGAT
* *
60802 TTATTTAGATACAAATTAAAGTTTAATGAT
1 TTATTTAGATACAAATTAAAGATAAATGAT
* * *
60832 TTATTTAAATAC-AA-TAAAAATATATGAGT
1 TTATTTAGATACAAATTAAAGATAAATGA-T
60861 TTATTTA
1 TTATTTA
60868 ACTAAAAGAG
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
28 9 0.16
29 18 0.32
30 30 0.53
ACGTcount: A:0.48, C:0.03, G:0.07, T:0.42
Consensus pattern (30 bp):
TTATTTAGATACAAATTAAAGATAAATGAT
Found at i:61270 original size:24 final size:26
Alignment explanation
Indices: 61225--61273 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
61215 ATAAAAAATT
*
61225 ATTATTAAAAAAATCATAAATTTTAAA
1 ATTAATAAAAAAAT-ATAAATTTTAAA
61252 ATTAATAAAAAAAT-T-AATTTTA
1 ATTAATAAAAAAATATAAATTTTA
61274 TCATTTTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 7 0.33
25 1 0.05
27 13 0.62
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (26 bp):
ATTAATAAAAAAATATAAATTTTAAA
Found at i:61569 original size:15 final size:14
Alignment explanation
Indices: 61538--61579 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
61528 TAATAATTGA
61538 TAAAAAATATTTAT
1 TAAAAAATATTTAT
61552 TAAAAAATGATATT-T
1 TAAAAAAT-AT-TTAT
*
61567 TAAAAAAAATTTA
1 TAAAAAATATTTA
61580 GCATTCATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
13 2 0.08
14 10 0.42
15 10 0.42
16 2 0.08
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (14 bp):
TAAAAAATATTTAT
Found at i:68398 original size:85 final size:85
Alignment explanation
Indices: 68255--68414 Score: 293
Period size: 85 Copynumber: 1.9 Consensus size: 85
68245 GGAACAAAGC
*
68255 AAGCCTTATATCCCATAACTCTGGGGCAGGTGTTGCCCATAATATGGAACAAACTAAGCCTTATA
1 AAGCCTTATATCCCATAACTCTGGGGCAGGTGTTGCCCATAATATGGAACAAACTAAGCCCTATA
68320 TCCCATAACTGTTCCATACT
66 TCCCATAACTGTTCCATACT
**
68340 AAGCCTTATATCCCATAACTCTGGGGCAGGTGTTGCTTATAATATGGAACAAACTAAGCCCTATA
1 AAGCCTTATATCCCATAACTCTGGGGCAGGTGTTGCCCATAATATGGAACAAACTAAGCCCTATA
68405 TCCCATAACT
66 TCCCATAACT
68415 CTGGGGTCGG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 72 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (85 bp):
AAGCCTTATATCCCATAACTCTGGGGCAGGTGTTGCCCATAATATGGAACAAACTAAGCCCTATA
TCCCATAACTGTTCCATACT
Found at i:74286 original size:44 final size:44
Alignment explanation
Indices: 74217--74304 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
74207 GATGATGGTT
74217 TGGTTATTTAGATTAATACACAACATTAC-AGGTTTTGAAAAGTC
1 TGGTTATTTAGATTAATACACAACATT-CTAGGTTTTGAAAAGTC
** *
74261 TGGTTATTTAGATTAATGTATAACATTCTAGGTTTTGAAAAGTC
1 TGGTTATTTAGATTAATACACAACATTCTAGGTTTTGAAAAGTC
74305 AATCTAATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 1 0.03
44 39 0.98
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (44 bp):
TGGTTATTTAGATTAATACACAACATTCTAGGTTTTGAAAAGTC
Found at i:74439 original size:21 final size:21
Alignment explanation
Indices: 74396--74440 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
74386 TTTGTTTTAG
*
74396 TTTTAAATTATTTTAATATAA
1 TTTTAAATTATTTAAATATAA
*
74417 TTTTTAATATATTTAAATA-AA
1 TTTTAAAT-TATTTAAATATAA
74438 TTT
1 TTT
74441 AGATATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TTTTAAATTATTTAAATATAA
Found at i:74500 original size:18 final size:17
Alignment explanation
Indices: 74466--74504 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
74456 ATTTTTATTT
**
74466 TATAAAAATTTAAAAAA
1 TATAAAAAACTAAAAAA
74483 TATAAAAAACTAATAAAA
1 TATAAAAAACTAA-AAAA
74501 TATA
1 TATA
74505 TAATAAAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (17 bp):
TATAAAAAACTAAAAAA
Found at i:74599 original size:22 final size:22
Alignment explanation
Indices: 74573--74624 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
74563 ATATCCAAAT
74573 TTAAATTAAATCAAATAAAAAA
1 TTAAATTAAATCAAATAAAAAA
* * * *
74595 TTAAATTGATTCCAATAAAATA
1 TTAAATTAAATCAAATAAAAAA
74617 TTATAATT
1 TTA-AATT
74625 TTTAATTAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 21 0.84
23 4 0.16
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.37
Consensus pattern (22 bp):
TTAAATTAAATCAAATAAAAAA
Found at i:74665 original size:16 final size:16
Alignment explanation
Indices: 74622--74664 Score: 61
Period size: 15 Copynumber: 2.6 Consensus size: 16
74612 AAATATTATA
74622 ATTTTTAATTAATTTTTT
1 ATTTTTAA--AATTTTTT
74640 ATTTTTAAAATTTTTT
1 ATTTTTAAAATTTTTT
74656 -TTTTTAAAA
1 ATTTTTAAAA
74665 AAATCTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.36
16 8 0.32
18 8 0.32
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
ATTTTTAAAATTTTTT
Done.