Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168108.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_353, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 31986
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:414 original size:26 final size:26
Alignment explanation
Indices: 385--437 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
375 TTGGTCTGAT
*
385 CTTACACTAGGAATGAACTCTGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
411 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
437 C
1 C
438 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:3636 original size:26 final size:26
Alignment explanation
Indices: 3607--3659 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3597 CCGGTCCGAT
*
3607 CTTACACTGGTAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
3633 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
3659 C
1 C
3660 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:4442 original size:26 final size:26
Alignment explanation
Indices: 4401--4460 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
4391 CGTCGGTTCG
4401 ATCCA-AT-CTTAAACTGAGAATGAA
1 ATCCATATGCTTAAACTGAGAATGAA
* *
4425 ATCCATATGCTTAGACTGGGAATGAA
1 ATCCATATGCTTAAACTGAGAATGAA
* *
4451 CTCCGTATGC
1 ATCCATATGC
4461 CTAAGTCAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 5 0.17
25 2 0.07
26 23 0.77
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (26 bp):
ATCCATATGCTTAAACTGAGAATGAA
Found at i:6227 original size:26 final size:26
Alignment explanation
Indices: 6198--6250 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
6188 CCGATCCGAT
* *
6198 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAACGAACTCCATATG
*
6224 CTTAGACTGGGAACGAACTCCATATG
1 CTTACACTGGGAACGAACTCCATATG
6250 C
1 C
6251 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAACGAACTCCATATG
Found at i:6418 original size:26 final size:26
Alignment explanation
Indices: 6382--6434 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6372 CTGGTCTGAT
*
6382 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
6408 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
6434 C
1 C
6435 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:8441 original size:894 final size:895
Alignment explanation
Indices: 4379--8967 Score: 5805
Period size: 897 Copynumber: 5.1 Consensus size: 895
4369 CAAAAAAAAA
* * * * * * * * * * *
4379 TGCACCCCTAACCGTCGGTTCGATCCAATCTTAAACTGAGAATGAAATCCATATGCTTAGACTGG
1 TGCACCCGTAACCCTCGATCCGGTCCGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGG
* * * *
4444 GAATGAACTCCGTATGCCTAAGTCAACCCAGGAAATGAACGTGT--GGGCGCTCAACCGGCCAGA
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG-A-GTGTACGGGCGCTCAGCTGGCCAGA
* * * * * ** ** * * *
4507 GGGGTAAGATGCACAAGTCGGGGATTGGTCGGGTCCCCCCTATGTGCTGCCAATCCTGCTTCCTC
129 GGGGTAGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCCTGCGTGCTGCTGATCCTACTACCAC
* ** *
4572 AACCCTCGGTCCGAT-TCAATCTTAGACTGGGAATGAACTCCACATGCCTAAGCCAACCAATGAA
194 AACCCTCGGTCCGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* * * * * * *
4636 ATGAGCGGACGGACGGGCACTACGTCAGCCAGAGAGGTGGGATGCGCAAGCCGTGGACCAATAGA
258 ATGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
* * *
4701 GTGGTAGGTGAGTTTATGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTA
323 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
*
4766 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
388 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* *
4831 TTTCATGATTTTTGAAACTTTTTACGATTCAGGATTTTTTTCAAAATTTTTTCAGAAGGAGTTCT
453 TTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTT-AAAATTTTTTCAGAAGGAGTTTT
* * * * *
4896 AGCCCCAAACTTGGTAGACGTGATCCTTGAATTTTTTCTGGCATGCAAAAAAAAATTCAGCTAAA
517 GGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
* *
4961 AACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACAGTTTAATG
582 AACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATG
* * * *
5026 GCTATTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
647 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTG
* *
5091 ATGAGGGATAAGGGGCCAATA-AAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACA
712 ATGAGGGATAAGGGGCCAATATAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC-
* ** * ** *
5155 CCCCCGCCCCCCCAATCGCCAAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGTG
776 CCCCCCCCCCCCCAATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGATGATGCTCCGGCG
* * * * *
5220 ATGGTGCCCCGGGTGAAAACAAAATGCGGTACCAGCACATGCCCAAGCCCAGCATG
841 ATGGTGGCCCGGGCGAAAA-AAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * * *
5276 TACACCCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTTTGTGTGCTTAGACTGG
1 TGCACCCGTAACCCTCGATCCGGTCCGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGG
* * * * * * *
5341 GAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGTGTGCGAGCACTCAGCCGACCAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTCAGCTGGCCAGAGG
* * * *
5406 GGTAGGATGCGCAAGCCAAGGATCGGTCGTGTCCCCCCCGCGTGTTG-TCGATCCTACTACCACA
131 GGTAGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCCTGCGTGCTGCT-GATCCTACTACCACA
* * * * * ** *
5470 ACCGTTGGTCTGGTCTGATCTTAGATTGGGAATGAACTTTGTATGCCCAAGCCAACCGATGAAAT
195 ACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAT
* * * *
5535 GAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGAGGGATGCGCAAGCCATGGATC-AGTAGGG
260 GAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA-TAGGG
* * **
5599 TGGTCGGTGGGTTTAGGCGCATCTTCATATTTCTGCTGTGCCAATGCCATTTTTATGGCTTGTAA
324 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
* * *
5664 ATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTTTAATT
389 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
5729 TTCACGATTTTTGAAACTCTTTACGGTTCAAGATTTTTTTAAAACTTTTTCAGAAGGAGTTCTGG
454 TTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
*
5794 CCCCAAACTTGGTAGATGTGATCCTTGTA-TTTTTTTGGCATACACAAAAAAATTCAGCTAAAAA
519 CCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
** *
5858 CTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTTAGACACTTTAATGGC
584 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGC
*
5923 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTATCGAGGTTTGAT
649 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGAT
* * *
5987 GAGGGATAAAGGGCCAACA-AGGGCAAAGTACCAGCACCCATCACACATCATGTGCGCACACCCC
714 GAGGGATAAGGGGCCAATATAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCC
* * * * * *
6051 CCCGCCCCCCAATCGCTGGAACCCCAATGCCGCC-AGTCAGGTTCTACGGTGATGCTCTGACGAT
779 CCCCCCCCCCAATCGCCGGAACCCCAATGCCGCCGA-TCAGGTTCTCCGATGATGCTCCGGCGAT
* * * *
6115 GGTGCCCCAGGCGAAAAAAAA-ATGTAGCACCAGCACATGCCCGAGCCCAGCATT
843 GGTGGCCCGGGCGAAAAAAAATACG--GCACCAGCACATGCCCGAGCCCAGCATG
* *
6169 TGCACCCGTAACCCTCGATCCGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCACCCGTAACCCTCGATCCGGTCCGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGG
* * * * * * *
6234 GAACGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGTTGGCCAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTCAGCTGGCCAGAGG
* * * * ** * **
6299 GGTAGGATGCGTAAGCCGAGGATTGGTC-AGCCCCCTCCTGCGTGCTGCCAATCCTGCTGTCACA
131 GGTAGGATGCGCAAGCCGAGGATCGGTCGGGTCCCC-CCTGCGTGCTGCTGATCCTACTACCACA
6363 ACCTTCGATCTGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
195 ACC--C--TC--G---G----T-C-C---G-AT---CT--G-AT-CTTAGACTGGGAATGAACTC
* * * * * *
6428 CATATGCCTAAGCCAACCAACGAAAGGAGCGGACGGGCGGGCACTATGCCGGCCAGAGAGGCGAG
234 CGTATGCCTAAGCCAACCGATGAAATGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGG
* * * * * **
6493 ATGTGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGCATATCTTCATATTTTTACTGTG
299 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
* *
6558 CCAATGCCATTTTTATGGCTTCTAAATTCATACAACGGTCCCTTAAGCCTTCATGTGAAGTTTCA
364 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* * * * * * *
6623 TGGCAAGGCGACTCATTTTTTATTTTTCATGATTTTTGACACATTTTATGGTTCAAGATTTTTTT
429 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTT
* * * *
6688 AAAATTTTTTCAGATGGAGTTTTAGCCCAAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGC
494 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGC
* *
6753 ATGCACAAAAAAATTCAGCTAAAAACT-AGAAGTGTATAAGATTTTGTGACCATTTGAAAAATGT
559 ATGCACAAAAAAATTCAGCTAAAAACTCA-AAGTGTACAAGATTTTGTGACCATTTGAAAAAGGT
* *
6817 GTCCCCATTTCAGACACTCTAATGGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAA
623 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * * * **
6882 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGTGC
688 AGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATAT-AGGGCCAAGTACCAGCAC
* * * * *
6947 CCATCACACATCATGTGCGCCCAACCCCCCCCGCCCCCCAATCGTCGGAAACCTAATGCCACCGA
752 CCATCACACATCATGTGCGCAC-ACCCCCCCC-CCCCCCAATCGCCGGAACCCCAATGCCGCCGA
* * * * *
7012 TCATGTTCTCCGACGATGCTGCGGCAATGGT-GCGCCGGGTGAAAAAACAATACGGCACCAGCAC
815 TCAGGTTCTCCGATGATGCTCCGGCGATGGTGGC-CCGGGCGAAAAAA-AATACGGCACCAGCAC
7076 ATGCCCGAGCCCAGCATG
878 ATGCCCGAGCCCAGCATG
* * * * * ** **
7094 GGCGCTCGTAATCCTCGTTCTTGTTTGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGG
1 TGCACCCGTAACCCTCGATCCGGTCCGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGG
* * * ** * *
7159 GAATGAACTCTGTACGCCTAAGTCAGCCCACGAAACGAGCATACGGGCTCTCAG-TCGGCCAGAA
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTCAGCT-GGCCAGAG
* * **
7223 GGGTAGGATGCGCAAGCC-AGGGATCGGTCGGGTCCCCCCTGTGTGATATTGATCCTACTACCAC
130 GGGTAGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCCTGCGTGCTGCTGATCCTACTACCAC
* * * * * *
7287 AACCCTCAGTCTGGTCTGATCTTAGACTAGGCATGAACTCTGTATGCCTAAGCCAACCGATGAAA
194 AACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
* ** * *
7352 TGAGCGGACGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGAACGATTGGG
259 TGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGG
7417 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
324 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
7482 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
389 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* *
7547 TTC-TCGATTTTTGAAGCTTTTTACGGTTCAGGATTTTTTTAACA-TTTTTCAGAAAGG-GTTTT
454 TTCAT-GATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAG-AAGGAGTTTT
* * * *
7609 GGCCCCACACTTGCTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTATCTAAA
517 GGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
* *
7674 AACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATG
582 AACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATG
* * *
7739 GCTACTGGCAGTAAACCTGTAAAATCTTAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGATTTG
647 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTG
* *
7804 ATGAGGGATAGGGGGCCAATATATGGGCCAAGTACTAGCACCCATCACACATCATGTGCGCACAC
712 ATGAGGGATAAGGGGCCAATATA-GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC
** * * * * * * *
7869 CCCCCAACCCCCCAATCGCCGGAACCCCAATGTCGTCGATCAGATTCTCTGATGATTCTCCAGTG
776 CCCCCCCCCCCCCAATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGATGATGCTCCGGCG
* *
7934 ATGGTGGCCCGGGCGAAAAAAAATATGGCACCAGCACATGCCCGAACCCAGCATG
841 ATGGTGGCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
** * * * * *
7989 TGCACCCACAACTCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTTCGTATGCTTGGACTAG
1 TGCACCCGTAACCCTCGATCCGGTCCGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGG
* * ** *
8054 GAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGTGTACGGGCGCTCAGCTGATCAGAAG
66 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTCAGCTGGCCAGAGG
* * * **
8119 GGTAGGATGCCCAAGCCGAGGATCGGT-GGGTCCCCCCTACGTGCTGCTGATCTTACGGCCACAA
131 GGTAGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCCTGCGTGCTGCTGATCCTACTACCACAA
* * * *
8183 CCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACTGACGAAACG
196 CCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATG
* * *
8248 AGCAGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCTGTGGATTGATAGGGTG
261 AGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
8313 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
326 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
8378 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTT
391 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* *
8443 CATGATTTTTGAAACTTTTTACGGTT-TGAGATTTTTTTAAAGTTTTTTCAGAAGGAGTTTTGGC
456 CATGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
* * *
8507 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAAC
520 CCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
8572 TCGAAGTGTACATA-ATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGC
585 TCAAAGTGTACA-AGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGC
* *
8636 TACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTT-AAGGAAGTGTGAGTTCTCGAGGTTTGA
649 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGG-GGTGTGAGTTCTCGAGGTTTGA
*
8700 TGAGGGAT-AGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCACACATCATGTGCGCACACC
713 TGAGGGATAAGGGGCCAATAT-AGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
* * * *
8764 ACACCCTCGCCCCCCCAATCGCCGGAACCCTAATGTCGCCGGTCAGGTTCTCCGATGATGCTTCG
777 -C-CCC-C-CCCCCCCAATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGATGATGCTCCG
* * * *
8829 ACGATGGT-GCCTCAGGCG-AAAAAAATGA-GGCACTAGCACATGCCCGAGCCTAGCATG
838 GCGATGGTGGCC-CGGGCGAAAAAAAAT-ACGGCACCAGCACATGCCCGAGCCCAGCATG
* *
8886 TGCACCCGTAACCCTCGATCCGATCCGATCTTACACTGGGAATGAAC-TCTGTATGCTTAGACTA
1 TGCACCCGTAACCCTCGATCCGGTCCGATCTTACACTGGGAATGAACTTC-GTATGCTTAGACTG
8950 GGAATGAACTCCGTATGC
65 GGAATGAACTCCGTATGC
8968 TTAGACTGGG
Statistics
Matches: 3190, Mismatches: 430, Indels: 144
0.85 0.11 0.04
Matches are distributed among these distances:
891 1 0.00
892 9 0.00
893 255 0.08
894 443 0.14
895 492 0.15
896 120 0.04
897 526 0.16
898 308 0.10
899 255 0.08
900 2 0.00
901 1 0.00
902 1 0.00
903 2 0.00
906 2 0.00
907 2 0.00
911 2 0.00
912 2 0.00
915 2 0.00
916 1 0.00
917 1 0.00
918 2 0.00
919 295 0.09
920 129 0.04
921 42 0.01
923 36 0.01
924 11 0.00
925 238 0.07
926 8 0.00
927 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
TGCACCCGTAACCCTCGATCCGGTCCGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTCAGCTGGCCAGAGG
GGTAGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCCTGCGTGCTGCTGATCCTACTACCACAA
CCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATG
AGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
CATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
CCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAAGGGGCCAATATAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
CCCCCCCCAATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGATGATGCTCCGGCGATGGT
GGCCCGGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
Found at i:8953 original size:26 final size:26
Alignment explanation
Indices: 8915--8993 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
8905 CCGATCCGAT
* *
8915 CTTACACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
8941 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
8967 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
8993 C
1 C
8994 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:12888 original size:895 final size:887
Alignment explanation
Indices: 11167--14093 Score: 3943
Period size: 895 Copynumber: 3.3 Consensus size: 887
11157 GCTCAATGCT
* * * * *
11167 CCAAACTTGGTAGACATGATCCTTGTATTTTTGCTGGCATGGAAAAAAAAATTCAGCTAAAAAAT
1 CCAAACTTGGTAGACATGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
11232 CGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTA
66 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
11297 TTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAATTCTTGAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * * **
11361 GGGATAGGGGGCCAATATAAGGGCCGAGTACCAGCACCCACCCCACATCATGTGCGTACACCTGC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC
* *
11426 CTGCCCCCCAATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCT-C-TGA---T--GATGGTGCC
261 CTGCCCCCCAATCGTCGAAACCCCAATGTCGTCGGTCAGGTTCTCCGTGATGCTCGGATGGTGCC
** * *
11484 CCGGGTGAAAAAAAATGCAACACCAGGACATGCACGAGCCCAGCATGTGCACCCGCAGCCCTCGA
326 CCGGGTGAAAAAAAATGTGACACCAGCACATGCACGAGCCCAGCATGTGCACCCGCAACCCTCGA
*
11549 TCT-AGTCCAGTAT-TACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATG
391 TCTGA-TCC-G-ATCTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * **
11612 CCTAAGTCAACACATGAAACGAGCGCGCGGGCGCTCAACCAGACCAGAGGGGCAGGATGCGCAAG
453 CCTAAGTCAAC-CACGAAACGAGCGTGCGGGCGCTC-AGTAGACCAGAGGGGCAGGATGCGCAAG
* * * * *
11677 TCGGGGATCGA-CTGGGT-CCCCCTACATGCTGCCGAACCTACT-ACTGTAACCCTCGGTCTGGT
516 CCGGGGATCGATC-GGGTCCCCCCTACGTGCTGCCGATCCTGCTGAC-GCAACCCTCGGTCTGGT
*
11739 GCGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGTGAGCGGGCGG
579 -CGATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGTGGGCGGGCGG
* * **
11804 GCACTATGTCGGCTAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGATTGGTAGGTGGGTTTA
642 GCACTACGTCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
11869 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
707 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
11934 CCTTAAGCCTTCATCTGAAGTTTCATGGCAAGACGTCTCGTTTTCTATTTTTAATGATTTTTGAA
772 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT-AA
*
11999 ACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCC
836 ACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
* * *
12051 CCAAACTTTGTAGACATGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAACACT
1 CCAAACTTGGTAGACATGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * * *
12116 CAAATTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTCCAGACACTTTAATGGCTA
66 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
12181 CTGGCAGCAAACCTGTAAGATCTCAATTGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
12246 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCACACATCATGCGCGCACACCCCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCC
* * *
12311 CCCGCCCCCCAATCGTAGAAACTCCAATGTCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATG
260 CCTGCCCCCCAATCGTCGAAACCCCAATGTCGTCGGTCAGGTTCTCC-GTGATGCT-C-G-GATG
* * * * *
12376 GTGCCCCGAGTGAAAAAAAATGTGGC-CTTAGCACATGCTCGAGCCCAACA-GTGCACCCGCAAC
321 GTGCCCCGGGTGAAAAAAAATGTGACAC-CAGCACATGCACGAGCCCAGCATGTGCACCCGCAAC
* * * *
12439 CCTCGGTCTGATCCGATCTAAGACTGGGAATGATCTCCGTACGCTTAGACTGGGAATGAACTCCG
385 CCTCGATCTGATCCGATCT-ACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * ***
12504 TATGCCTAAGTTAACCTACGAAACGAGCGTGCGGGCACTCAGTTGACCAGAGGGGCAGGAT-AAT
449 TATGCCTAAGTCAACC-ACGAAACGAGCGTGCGGGCGCTCAGTAGACCAGAGGGGCAGGATGCGC
* * * *
12568 AAGCCGAGGATCGATCGGGTCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCTGA
513 AAGCCGGGGATCGATCGGGTCCCCCCTACGTGCTGCCGATCCTGCTGACGCAACCCTCGGTCTGG
* *
12633 TCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
578 TC-GATCTTAGACTG-GAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGTGGGCGGGCG
* * * * * * *
12698 GGCACTACGCCAGCCAAAGAGGCGGGATGCGAAAACCGCGGATCGATAGGGTGGTAGGTGGGTTT
641 GGCACTACGTCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
12763 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
706 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
12828 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAA
771 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT-A
* * * *
12893 AACTTTTTATGATTCGGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGTCC
835 AACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
* * * * *
12946 CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCGTGCACAAGAAAATTCTGCAAAAAACT
1 CCAAACTTGGTAGACATGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
13011 CGAAGTGTACAGGATTTTGTGAACATTTG-AAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA
66 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
** *
13075 CTGGCAGCAAA-CTGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGACATTTGGTG
131 CTGGCAGCAAACCT-GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * **
13139 AGGGATAGGGGGCCAACATAAGGGCCAAGTACCAACACCCATTGCACATCATGTGCGCACACCCC
195 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCC
* * * * *
13204 CTTGCCCCCCCAACCGTCGAAACCCCAATGCCGTCGGTCAGGCTCTCCGACGATGCTCAAGTGAT
260 CCTG-CCCCCCAATCGTCGAAACCCCAATGTCGTCGGTCAGGTTCTCCG-TGATGCTC--G-GAT
* * * * * *
13269 GGTGCCCCGGGCGAAAAAAACTATGACACCAGCACATGCCCGAGCCCAGCATGTGCACCTGTAAC
320 GGTGCCCCGGGTGAAAAAAAATGTGACACCAGCACATGCACGAGCCCAGCATGTGCACCCGCAAC
* *
13334 TCTAC-ATCTGATCCGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCC
385 CCT-CGATCTGATCCGATC-TACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
** * * *
13398 GTATGCCTAAGTCAACCCACGAAACCTGCGTGCGGACGCTCAGTCGGCCAGAGGGGCAGGATGCG
448 GTATGCCTAAGTCAA-CCACGAAACGAGCGTGCGGGCGCTCAGTAGACCAGAGGGGCAGGATGCG
* * * * * * ** * *
13463 CAAGCTGGGGATCGGTCGGGTCCCCCCTACGTGCTACCGATCTTGCTGCCACAACTTTTGGTTTG
512 CAAGCCGGGGATCGATCGGGTCCCCCCTACGTGCTGCCGATCCTGCTGACGCAACCCTCGGTCT-
* * * * * *
13528 GGCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACAAGTAGGCGAGC
576 GGTCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGTGGGCGGGC
* * * *
13593 GGGCACTACATCGGCCAGAGAGGTGGGATGTGCGAGCTGTGGATCGATAGGGTGGTAGGTGGGTT
640 GGGCACTACGTCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
13658 TAGGCACATCTTCATATTTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
705 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
13723 TCCCTTAAGCCTTCATGTGAATTTTCGTGGCAAGATGACTCGTTTTCTATTTTCCATGATTTTTA
770 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTA
* * ** *
13788 AAATGTTTTACGGTTCGGGA-TTTTTTAAAATTCTTTCAGAAATAGTTTTGGTC
835 AACT-TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
* *
13841 CCAAACTTGGTAGACATGATCCTTATAATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAACCT
1 CCAAACTTGGTAGACATGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
13906 CGAAGTGTACAGGATTTTGTGACCA-TTCAAAATAAGTGTCCCTATTTCATACACTTTAATGGCT
66 CGAAGTGTACAGGATTTTGTGACCATTTGAAAA-AAGTGTCCCCATTTCAGACACTTTAATGGCT
*
13970 ACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
130 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* ** *
14035 AGGGATAGGGGGCCAAAATTGGGGCCAAGTACCAGCACCCATCACACATCATATGCGCA
195 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
14094 TGCCCGAGCC
Statistics
Matches: 1783, Mismatches: 221, Indels: 66
0.86 0.11 0.03
Matches are distributed among these distances:
884 149 0.08
885 78 0.04
886 42 0.02
887 1 0.00
889 3 0.00
892 1 0.00
893 10 0.01
894 254 0.14
895 660 0.37
896 535 0.30
897 50 0.03
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (887 bp):
CCAAACTTGGTAGACATGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCC
CTGCCCCCCAATCGTCGAAACCCCAATGTCGTCGGTCAGGTTCTCCGTGATGCTCGGATGGTGCC
CCGGGTGAAAAAAAATGTGACACCAGCACATGCACGAGCCCAGCATGTGCACCCGCAACCCTCGA
TCTGATCCGATCTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCACGAAACGAGCGTGCGGGCGCTCAGTAGACCAGAGGGGCAGGATGCGCAAGCCGGG
GATCGATCGGGTCCCCCCTACGTGCTGCCGATCCTGCTGACGCAACCCTCGGTCTGGTCGATCTT
AGACTGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGTGGGCGGGCGGGCACTACGT
CGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAACTTTTTACG
GTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
Found at i:13380 original size:26 final size:26
Alignment explanation
Indices: 13351--13403 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13341 CTGATCCGAT
*
13351 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
13377 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
13403 C
1 C
13404 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:16351 original size:885 final size:885
Alignment explanation
Indices: 14092--16679 Score: 3707
Period size: 894 Copynumber: 2.9 Consensus size: 885
14082 ATCATATGCG
* * * *
14092 CATGCCCGAGCCCATTATGTGCTCCCGCAACCCTCAGTCCGGTCCGATCTGACACTGGGAATGAA
1 CATGCCCGAGCCCAGTATGTGCACCCGCAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAA
*
14157 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAG
66 CTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAG
* * *
14222 GCGCTCGGTCGGCCAGAGGGATAGGATGCGTAAGCCGGGGATCGACCGGGTCCCCCCTATGTGCT
131 GCGCTCAGTCGGCCAGAGGGCTAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCCTATGTGCT
* ** * * **
14287 GCCGATCCTGCTGCTGCAACCCTCAGCCCGATCCAATCTTAGATTGGGAATGAACTCTATATGCC
196 GCTGATCCTGCTGCCACAACCCTCAG-TCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * *
14352 TAAGCCAACCGACAAAATGAGCGGGTGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAACCG
260 TAAGCCAACCGACAAAACGAGCGGGCGGGCACTAAGACGGCCAGAGAGGCGGGATGCGCAAGCCG
* * * *
14417 TGGGTCGATAGGGTGGTAGGTGGGTTTAGGAAGATCTTCATATTTCTGCCATGCCAATGCCATTT
325 TGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
* *
14482 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGACGTTTCATGGCAAGATGAC
390 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * *
14547 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTA-TGATTCGGGATTTTTTAAAAAATTTTTC
455 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACCG-TTCGGGATTTTTTAAAAATTTTTTC
* *
14611 ACG-AGGAGTTTTGGCCCCACACTTAGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
519 A-GAAGGAGTTTTGGCCCCACACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
14675 AAATTCAGCTAAAAACTCAAAGTG-T-ATAGGATTTTGTGACCATTTGAAAAAACTATCCCCATT
583 AAATTCAGCTAAAAACTCAAAGTGTTCATA-GATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
14738 TCAAACACTTTAATTGCTACTGGCAACAAAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTG
647 TCAGACACTTTAATGGCTACTGGC-A-GAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
14803 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGC
710 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
** * *
14868 ACATCATGTGCGCACACCCCTTCACC-CCCCCAATCGTCGGAACCCTAATGCCGTCGGTAGGTTC
775 ACATCATGTGCGCACACCCC--C-CCGCCCCCAATCACCGGAACCCCAATG-CATC-GTAGG-T-
** * * *
14932 TCTGGCGATGCTCCGACGATGGTGCCCCGGTTGAAAAAAAATGTGGCATCAGCA
833 TC-GAAGATGCTCCGACGATGGTGCCCCGGTCGAAAAAAAATGCGGCACCAGCA
** * *
14986 CATGCTTGAGCCCAGTATGTGCACCCGTAACCCTCAGCCCGATCCGATCTTACACTGGGAATGAA
1 CATGCCCGAGCCCAGTATGTGCACCCGCAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAA
* *
15051 CTCCGTATGCTTCGA-TTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCA
66 CTCCGTATGCTTAGACTT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCA
** * * **
15115 GGCTTTCAGCCGGCCAGAGGGGC-AGGATGCGCAAGCCAGGGATCGATTGGGTCCCCCCTATGTG
130 GGCGCTCAGTCGGCCAGA-GGGCTAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCCTATGTG
* * *
15179 CT-ATCGATCCTGCTGCCATAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
194 CTGCT-GATCCTGCTGCCACAACCCTCAGTC-GATCCAATCTTAGACTGGGAATGAACTCCGTAT
* *
15243 GCCTAAGCCAACCGACAAAACGAGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAG
257 GCCTAAGCCAACCGACAAAACGAGCGGGCGGGCACTAAGACGGCCAGAGAGGCGGGATGCGCAAG
* * *
15308 TCATAGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
322 CCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
*
15373 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTTATGGCAAGAC
387 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
*
15438 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACCGTTCGGGATTTTTTAAAAATTTTT
452 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACCGTTCGGGATTTTTTAAAAATTTTT
*
15503 TCAGAAGGAGTTTTGGCCCCACACTTGGTAGACGTGATCCTTGTATTTTTGTTGTCATGCACAAA
517 TCAGAAGGAGTTTTGGCCCCACACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
15568 AAAATTCAGCTAAAAACTCGAAGTGTTCATA-ATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
582 AAAATTCAGCTAAAAACTCAAAGTGTTCATAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
15632 TCAGACACTTTAGTGGCTACTGGCAGTAAACCTATAAAATCTCAAATCCTCTTTAAGGGGGTGTG
647 TCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
15697 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCAC
712 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
15762 ATCATGTGTGCACACCCCCCCGCCCCCAATCACCGGAACCCCAATG-AT-GTAGG-TC-AAG-TT
777 ATCATGTGCGCACACCCCCCCGCCCCCAATCACCGGAACCCCAATGCATCGTAGGTTCGAAGATG
*
15822 CTCCGGCGATGGTGCCCCAGG-CGAAAAAAAATGCGGCACCAGCA
842 CTCCGACGATGGTGCCCC-GGTCGAAAAAAAATGCGGCACCAGCA
* ** * * *
15866 CATGCCCGAGCCCAGTATGTGCACCTGCAACCCTCCA-TTTGATCCAATTTTACATTGGGAATGA
1 CATGCCCGAGCCCAGTATGTGCACCCGCAACCCT-CAGTCCGATCCGATCTTACACTGGGAATGA
* * *
15930 ACTCCGTATGCTTAGACTTGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCG
65 ACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCA
* * * *
15995 GGAGCTCAGTCAGCCAGAGGGCTAGGATGCACAAGCTGGGGATCGACCGGGTCCCCCTCTATGTG
130 GGCGCTCAGTCGGCCAGAGGGCTAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCC-CTATGTG
* * * *
16060 CTGCTGACCCTGCTGCCACAACCCTCAGTTCGACCCCATCTTAGACTGGGAATGAACTCCGTATA
194 CTGCTGATCCTGCTGCCACAACCCTCAG-TCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
* * ** * *
16125 CCTAAGTCAATCGATGAAACGAGCGGGCGGGCGGGTACTAAGACAGCCAGAGAGGCGGCATGCGC
258 CCTAAGCCAACCGACAAAACGAGCGGGCGGGC----ACTAAGACGGCCAGAGAGGCGGGATGCGC
16190 AAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATG
319 AAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATG
*
16255 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCATGTGAAGTTTCATGGCAA
384 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
* *
16320 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATT
449 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACCGTTCGGGATTTTTTAAAAATT
* * * * * * * *
16385 TTTTTAGAAGGAGTGTTGGACCCAAATTTGATAGACGTGATCCTTTTATTTTTTTTGGCATGCAC
514 TTTTCAGAAGGAGTTTTGGCCCCACACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
16450 AAAAAAATTCAGCTAAAAATTCAAAGTGTACA-AGATTTTGTGACCATTTGAAAAAAGTGTCCCC
579 AAAAAAATTCAGCTAAAAACTCAAAGTGTTCATAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
16514 ATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
644 ATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
16579 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
709 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* *
16644 CACATCATGTGCGTACACCCCTCCGTCCCCCCAATC
774 CACATCATGTGCGCACACCCCCCCG--CCCCCAATC
16680 GTTGAAACCC
Statistics
Matches: 1522, Mismatches: 149, Indels: 53
0.88 0.09 0.03
Matches are distributed among these distances:
879 4 0.00
880 188 0.12
881 96 0.06
882 3 0.00
883 2 0.00
884 1 0.00
885 471 0.31
886 5 0.00
887 9 0.01
888 1 0.00
889 2 0.00
890 22 0.01
892 114 0.07
893 4 0.00
894 592 0.39
895 5 0.00
896 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (885 bp):
CATGCCCGAGCCCAGTATGTGCACCCGCAACCCTCAGTCCGATCCGATCTTACACTGGGAATGAA
CTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAG
GCGCTCAGTCGGCCAGAGGGCTAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCCTATGTGCT
GCTGATCCTGCTGCCACAACCCTCAGTCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
AAGCCAACCGACAAAACGAGCGGGCGGGCACTAAGACGGCCAGAGAGGCGGGATGCGCAAGCCGT
GGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACCGTTCGGGATTTTTTAAAAATTTTTTCAG
AAGGAGTTTTGGCCCCACACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCAAAGTGTTCATAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCCGCCCCCAATCACCGGAACCCCAATGCATCGTAGGTTCGAAGATGCTCC
GACGATGGTGCCCCGGTCGAAAAAAAATGCGGCACCAGCA
Found at i:16781 original size:26 final size:26
Alignment explanation
Indices: 16752--16802 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16742 CTGGTTTGCT
*
16752 CTTACACCGGGAATGAACTCTGTATG
1 CTTACACCGGGAATGAACTCCGTATG
* *
16778 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACCGGGAATGAACTCCGTAT
16803 CCCAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTACACCGGGAATGAACTCCGTATG
Found at i:22032 original size:26 final size:26
Alignment explanation
Indices: 22009--22078 Score: 113
Period size: 26 Copynumber: 2.7 Consensus size: 26
21999 TGATCTTACG
22009 CTGGGAATGAACTCCGTATGCTTAGA
1 CTGGGAATGAACTCCGTATGCTTAGA
* *
22035 CTGGGAATGAACTCTGTGTGCTTAGA
1 CTGGGAATGAACTCCGTATGCTTAGA
*
22061 CTGAGAATGAACTCCGTA
1 CTGGGAATGAACTCCGTA
22079 CGCCTAAGTC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTGGGAATGAACTCCGTATGCTTAGA
Found at i:22960 original size:26 final size:26
Alignment explanation
Indices: 22922--22974 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22912 ATGGTCCGAT
*
22922 CTTACACTAGGAATGAACTCTGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
22948 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
22974 C
1 C
22975 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:24068 original size:26 final size:26
Alignment explanation
Indices: 24039--24090 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
24029 TCTGGTCTGA
*
24039 TCTTACACTGGGAATGAACTCTGTAT
1 TCTTACACTGGGAATGAACTCCGTAT
*
24065 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTACACTGGGAATGAACTCCGTAT
24091 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTACACTGGGAATGAACTCCGTAT
Found at i:24936 original size:26 final size:26
Alignment explanation
Indices: 24900--24952 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24890 CCGATCCGAT
24900 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTTCGTATG
*
24926 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTTCGTATG
24952 C
1 C
24953 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTTCGTATG
Found at i:25832 original size:26 final size:26
Alignment explanation
Indices: 25796--25848 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
25786 CTGGTCCAAT
25796 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
25822 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
25848 C
1 C
25849 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:26151 original size:895 final size:893
Alignment explanation
Indices: 24255--27169 Score: 4278
Period size: 900 Copynumber: 3.2 Consensus size: 893
24245 GTATGCCTAA
* * *
24255 GCCAGAGAGGCGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTTGGTTTAGGTACATCTTC
1 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
24320 ATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTT
**
24385 CATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGG
131 CATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
** * * * * * *
24450 TTCGGGATCTTTTGAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTC
196 TTCAAGATTTTTTAAAAATTTTTT---TAGGAGTTTTGGCCCCAAACATGGTAGTCATGATCCTT
24515 GTAGTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACC
258 GTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACC
* * *
24580 ATTTGAAAAAAGTGACCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTC
322 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTC
* * * *
24645 AAATGCTCTTTAAGGGGGTGTGAGTTCTCAACGTTTGATGAGGGATAGTGGGCCAATATAAGGGC
387 AAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGC
* * *
24710 CAAGCACCAGCACCCATCGCACATCATGTGAGCACACCCCCCCCCCGCCCC-CCCAATCGTCAGA
451 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA--ACCCCCCCGCCCCTCCCAATC-TCAGA
* * * **
24774 ACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGAGCAAAAAAAAA
513 ACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCAG-GTGAAAAAAAA
* * * * *
24839 TGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCATAACCTTCGGTCCGATCCGATCTTA
577 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTA
*
24904 CACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGA
642 CACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGA
* ** * * *
24969 AACGAGCGTGCGGGCGCTCAACCAGCCAAAGGCACAGGATGCGCAAGCTAGGGATC-AGTCGGGT
707 AACGAGCGTGCGGGCACTCAACTGGCCAGAGGCGCAGGATGCGCAAGCTGGGGATCGA-TCGGGT
* * ** ** *
25033 CCCCCCCTGTGTGTTGCCGATCCTGCTACCACAACCCTCGGTTCAATCCAATCTTAGACTGGGAA
771 CCCCCCCTGCGTGTTGCCGATCCTGCTACCGCAACCCTTAGTTTGATCTAATCTTAGACTGGGAA
* * *
25098 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-AGGACGGGCGGGCACTATGTCG
836 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGG-CTGGCAGGCACTACGTCG
* *
25156 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAGATCTTC
1 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
25221 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTT
66 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTT
* * *
25286 CATGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGG
131 CATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
** * *
25351 TTCAAGATTTTTTTTAAATTTTTTTAGGAGTTTTGGTCCCAAACATGGTAGTCGTGATCCTTGTA
196 TTCAAGATTTTTTAAAAATTTTTTTAGGAGTTTTGGCCCCAAACATGGTAGTCATGATCCTTGTA
* *
25416 TTTTTATTGGCATGCACAAAAGAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATT
261 TTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATT
25481 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAA
325 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAA
25546 TGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAG
390 TGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAG
* * *
25611 TACCAGCACCCATCGCACATCATGTGCGCAGAACCCCCCTGCCCCTCGCAATCTCTAGAACCCCA
455 TACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCCGCCCCTCCCAATCTC-AGAACCCCA
* * * * **
25676 ATGCTACCAGTTAGGTTCTTCGGCAATGCTCCGGCGATGGTGCCCTAGGTGAAAAAAAATGCGGC
519 ATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCC-AGGTGAAAAAAAATGCGGC
* * * * * * *
25741 ACCAGCATATACCCGAGCCTAGCATGTGCACCCGCAACCCTCAGTCTGGTCCAATCTTACACTGG
583 ACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTACACTGG
25806 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAG
648 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAG
25871 CGTGCGGGCACTCAACTGGCCAGAGGCGCAGGATGCGCAAGCTGGGGATCGATCGGGT-CCCCCC
713 CGTGCGGGCACTCAACTGGCCAGAGGCGCAGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCCC
* * **
25935 TGCATGTTGCCGATCCTGCTACCGCAACCCTTAGTTTGATCTTATCTTAGACTGTTAATGAACTC
778 TGCGTGTTGCCGATCCTGCTACCGCAACCCTTAGTTTGATCTAATCTTAGACTGGGAATGAACTC
*
26000 CATATGCCTAAGCCAACCGACGAAACGAGCAGGCTGGCAGGCACTACGTCG
843 CGTATGCCTAAGCCAACCGACGAAACGAGCAGGCTGGCAGGCACTACGTCG
* * * * *
26051 GCCAGAGATGCGAGATGCGCAAGCCATGGATCGATAAGGTGGTAGATGGGTTTAGGCACATCTTC
1 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
26116 ATATTTCTTCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATAAAATCGTCCCTTAAGCCTT
66 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTT
26181 CATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
131 CATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* * * *
26246 CTCAAGATTTTTTAAAAATTTTTTTAGAAGTTGTTTTCGCCCCAAACAAGGTAGTCATGATCCTT
196 TTCAAGATTTTTTAAAAATTTTTTTAG--G-AGTTTTGGCCCCAAACATGGTAGTCATGATCCTT
* *
26311 GTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACC
258 GTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACC
* * * *
26376 ATTGGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGTAGCAAACTTGTAAAATTTC
322 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTC
*
26441 AAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATATGGGGCCAATATAAGGGC
387 AAATGCTCTTT-AAGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGC
* * * *
26506 CAATTACCAGCACCCATTGCACATCATGTGCGCACAACCCCGCCCGCCCCTCTCAATCACCAGAA
451 CAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCC-CCCGCCCCTCCCAATC-TCAGAA
* * *
26571 CCCCAATGCCACCGGTCATGTTCTCCGGTGATGCTCTGACGATGGTGCCCCAGGTGAAAAAAAAT
514 CCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTG-CCCAGGTGAAAAAAAAT
*
26636 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATTTTAC
578 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTAC
* * *
26701 ACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAGGTCAACCCACGAA
643 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAA
* * * * * * ** *
26766 ACGAGCGTAC-GGCTCTC-AGTCGGCCAGAGGGGCAGGATGCACAAGCCGACGATCGATCGAGTC
708 ACGAGCGTGCGGGCACTCAACT-GGCCAGAGGCGCAGGATGCGCAAGCTGGGGATCGATCGGGTC
* * * * * * * * *
26829 CCCCCCTACGTGCTGTCGATCTTGGTACTGCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAAT
772 CCCCCCTGCGTGTTGCCGATCCTGCTACCGCAACCCTTAGTTTGATCTAATCTTAGACTGGGAAT
* ** *
26894 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGGTGGGCAGGCACTACACCA
837 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCT-GGCAGGCACTACGTCG
* *
26951 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATTGATAGGGTGGAAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
27016 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
66 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTT
* * *
27081 CATGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGG
131 CATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
*
27146 TTCGAGATTTTTTAAAAATTTTTT
196 TTCAAGATTTTTTAAAAATTTTTT
27170 CAGACACTTT
Statistics
Matches: 1816, Mismatches: 182, Indels: 33
0.89 0.09 0.02
Matches are distributed among these distances:
895 322 0.18
896 237 0.13
897 88 0.05
898 327 0.18
899 134 0.07
900 502 0.28
901 206 0.11
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (893 bp):
GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTT
CATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
TTCAAGATTTTTTAAAAATTTTTTTAGGAGTTTTGGCCCCAAACATGGTAGTCATGATCCTTGTA
TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCCGCCCCTCCCAATCTCAGAACCCCAAT
GCCACCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCAGGTGAAAAAAAATGCGGCACC
AGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTACACTGGGAA
TGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGT
GCGGGCACTCAACTGGCCAGAGGCGCAGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCCCTGC
GTGTTGCCGATCCTGCTACCGCAACCCTTAGTTTGATCTAATCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGCCAACCGACGAAACGAGCAGGCTGGCAGGCACTACGTCG
Found at i:28271 original size:16 final size:16
Alignment explanation
Indices: 28245--28309 Score: 51
Period size: 15 Copynumber: 3.9 Consensus size: 16
28235 TCACACTTGT
28245 CTTTAGGATTTTTAGGA
1 CTTT-GGATTTTTAGGA
*
28262 CTTTGGA-TTTTAAGA
1 CTTTGGATTTTTAGGA
* * *
28277 GTTTTGAATTTTAGGGGA
1 CTTTGGATTTTTA--GGA
*
28295 TTTTGGATTTTTAGG
1 CTTTGGATTTTTAGG
28310 GGTTTTAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
15 12 0.32
16 10 0.26
17 4 0.11
18 12 0.32
ACGTcount: A:0.22, C:0.03, G:0.26, T:0.49
Consensus pattern (16 bp):
CTTTGGATTTTTAGGA
Found at i:28304 original size:17 final size:16
Alignment explanation
Indices: 28263--28315 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
28253 TTTTTAGGAC
* *
28263 TTTGGATTTTAAGAGT
1 TTTGGATTTTAGGGGT
*
28279 TTTGAATTTTAGGGGAT
1 TTTGGATTTTAGGGG-T
28296 TTTGGATTTTTAGGGGT
1 TTTGGA-TTTTAGGGGT
28313 TTT
1 TTT
28316 AAAAACTTAG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
16 12 0.39
17 10 0.32
18 9 0.29
ACGTcount: A:0.19, C:0.00, G:0.28, T:0.53
Consensus pattern (16 bp):
TTTGGATTTTAGGGGT
Found at i:30866 original size:26 final size:26
Alignment explanation
Indices: 30837--30889 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30827 CCGGTCCGAT
30837 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
30863 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
30889 C
1 C
30890 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:31770 original size:26 final size:26
Alignment explanation
Indices: 31734--31786 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
31724 CCGGTCTGAT
31734 CTTACACTGGGAATAAACTCCATATG
1 CTTACACTGGGAATAAACTCCATATG
* * *
31760 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATAAACTCCATATG
31786 C
1 C
31787 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCCATATG
Found at i:31890 original size:896 final size:894
Alignment explanation
Indices: 29974--31983 Score: 2836
Period size: 896 Copynumber: 2.2 Consensus size: 894
29964 GATCTTACAT
* * ** * * *
29974 TGGGAATGAACTCTGTATGCCAAAGTCAACCCACGGAACGAA-CGTAC-GATCGTTCAGTCGGCC
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAAC-AAGCGTGCGGGT-GCTCAGTCGGCC
* * * ** * *
30037 AGAGGGACAGGATGCACAAGCCGAGGATCGGTCGGGTTCCCCCCTGCGTGCTACCGATCCTGTTA
64 AGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGG-TCCCCCCTGCGTGCT-GTGATCTTGCTA
* * * *
30102 CTGCAACCCTCAGTATGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
127 CCGCAACACTCAGTACGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC
* * * *
30167 GAAATGAGCGGGTGGGCGGGCACTACGCCGGCTAGAGAGGCGGGATGCGCAAGCCGTCGATCGAT
192 AAAATGAGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTCGATCGAT
30232 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
257 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
30297 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAATTTCATGGCAGGACCTCGTTTTCTAT
322 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAATTTCATGGCAGGACCTCGTTTTCTAT
* **
30362 TTTTCACGATTTTTGAATCCTTTTACGCTTCGAGATTTTTTTAAAATTTTTTCGAAAGGAGTTTT
387 TTTTCACGATTTTTCAAAACTTTTACGCTTCGAGATTTTTTTAAAATTTTTTCGAAAGGAGTTTT
* **
30427 GGCCCAAAACTTGGTAGACATGATCTTTGTATTTTTGTTGGCATGTGCAAAAAAATTCAGCTAAA
452 GGCCCAAAACTTGGCAGACATGATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* *
30492 AACCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGG
517 AACCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGG
* * * *
30557 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGCTCTCAAGGTTTGA
582 CTACTGGCAACAAACCTGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGCTCTCAAGGTTCGA
*
30622 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACAAC
647 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACAAC
* * * *
30687 CCCCCCGACCCCCAATCGCCGTAACACCAATGTCGCTGGTCAGGTTCTCCGACGATTCTCCGACG
712 CCCCCCGACCCCCAATCGCAGTAACACCAATGCCGCTAGTCAGGTTCTCCGACGATGCTCCGACG
* * * ** *
30752 ATGGTGCCCCGGGCGAAAAAAAAATGTGGCACCAGCACATGCTCGTGGTCAGCATGTGTACCCAC
777 ATGGTGCCCCGGGCGAAAAAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCAC
* * * *
30817 AATCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGAC
842 AACCCTCGGCCCGGTCCGATCTTACACTGGGAATAAACTCCATATGCTTAGAC
* * *
30870 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGGGCAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGTGCTCAGTCGGCCAG
* * *
30935 AGGGGCAGGATGCGCAAGCTGGGGATCGATCGGGTGCCCCCTTGCGTGCTGCTGATCTTGCTACC
66 AGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCCCTGCGTGCTG-TGATCTTGCTACC
* * * * * * *
31000 GTAACGCTCAGTCCGATCCGATCTTTGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACAA
129 GCAACACTCAGTACGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAA
** * * * * *
31065 AATGTTCAGGCGGGCGGGCACTACGTCGGCCAGTGAGGTGGGATGCGTAAGCCGTGGATCGATAG
194 AATGAGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTCGATCGATAG
* * *
31130 GGTGGTTGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCATTGCCATTTTTATGGCTTGT
259 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
*
31195 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGA-CTCGTTTTCTA
324 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAATTTCATGGC-AG--GACCTCGTTTTCTA
* *
31259 TTTTTCACGA-TTTTCAAAACTTTGTACGGTTCGAGATTTTTTTAAAATTTTTTC-AGAATGAGT
386 TTTTTCACGATTTTTCAAAACTTT-TACGCTTCGAGATTTTTTTAAAATTTTTTCGA-AAGGAGT
* * *
31322 TTTGTCCCCAAACTTGGCAGACGTGATCCTTT-TATTTTTGTTGGCATGCACAAAAAAATTCAGC
449 TTTGGCCCAAAACTTGGCAGACATGAT-CTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
31386 TAAAAACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAAACACTTT
513 TAAAAAC-CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTT
* * *
31451 AATTGCTACTGGCAACAAACCTGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTCATGG
577 AATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGCTCTCAAGG
31516 TTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGC
642 TTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGC
* *
31581 AC-ACCCCCCCGCCCCCTCAATCGTCAG-AAC-CCAATGCCG-TCAGTCAGGTTCTCCGATGATG
707 ACAACCCCCCCGACCCC-CAATCG-CAGTAACACCAATGCCGCT-AGTCAGGTTCTCCGACGATG
* * *
31642 CTCTGGCGATGGTGCCCCGGGTG-AAAAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGT
769 CTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGT
** *
31706 GCACCCGTAACCCTCGGCCCGGTCTGATCTTACACTGGGAATAAACTCCATATGCTTAGAC
834 GCACCCACAACCCTCGGCCCGGTCCGATCTTACACTGGGAATAAACTCCATATGCTTAGAC
*
31767 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGTGCTCAGTCGACCAG
1 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGTGCTCAGTCGGCCAG
* * * * *
31832 AGGGGCAGGATGCGCAAGCCGGGGTTCGGCCGGGTCCCCCCTGAGTGCTGTAGATCTTGCTGCCA
66 AGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTGT-GATCTTGCTACCG
* * * * **
31897 CAACACTCCGTTCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTAATGAA
130 CAACACTCAGTACGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAAA
* * *
31962 ACGAGCGGGCAGGCGGGCACTA
195 ATGAGCAGGCGGGCGGGCACTA
31984 GAA
Statistics
Matches: 980, Mismatches: 119, Indels: 30
0.87 0.11 0.03
Matches are distributed among these distances:
895 3 0.00
896 413 0.42
897 196 0.20
898 174 0.18
899 192 0.20
900 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACAAGCGTGCGGGTGCTCAGTCGGCCAG
AGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCCTGCGTGCTGTGATCTTGCTACCGC
AACACTCAGTACGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAAAA
TGAGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTCGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAATTTCATGGCAGGACCTCGTTTTCTATTTTT
CACGATTTTTCAAAACTTTTACGCTTCGAGATTTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCC
CAAAACTTGGCAGACATGATCTTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACC
GAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTAC
TGGCAACAAACCTGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGCTCTCAAGGTTCGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACAACCCCC
CCGACCCCCAATCGCAGTAACACCAATGCCGCTAGTCAGGTTCTCCGACGATGCTCCGACGATGG
TGCCCCGGGCGAAAAAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACC
CTCGGCCCGGTCCGATCTTACACTGGGAATAAACTCCATATGCTTAGAC
Done.