genome.fa.s286.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168111.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_356, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31917

Tables:   1   

This is table  1  of  1  ( 87 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258--300	21	2.0	21	82	8	52	39	4	0	55	1.20
668--712	16	2.7	17	80	12	58	60	0	0	40	0.97
679--709	11	2.7	12	95	5	55	58	0	0	41	0.98
1759--1796	15	2.4	16	86	4	51	44	7	5	42	1.56
1890--1965	18	4.3	17	76	15	66	53	1	0	44	1.08
1920--1958	14	3.0	14	85	14	57	51	0	0	48	1.00
1890--1965	35	2.1	36	83	11	95	53	1	0	44	1.08
1909--1961	24	2.5	19	71	25	52	52	1	0	45	1.11
2272--2315	14	3.1	14	81	12	54	52	0	0	47	1.00
2909--2964	15	3.7	14	75	20	51	46	0	3	50	1.19
2899--2979	28	2.7	31	79	11	80	45	0	3	50	1.19
2909--2978	22	3.1	22	72	17	63	47	0	2	50	1.16
3032--3078	16	3.0	16	79	14	62	42	4	0	53	1.20
3397--3446	21	2.4	21	96	0	91	40	4	8	48	1.51
3629--3680	23	2.3	22	86	6	68	48	0	1	50	1.12
4302--4351	22	2.3	22	86	6	66	50	4	4	42	1.40
4320--4373	22	2.5	21	81	6	54	50	1	1	46	1.23
4803--4858	9	6.4	9	73	6	53	44	1	0	53	1.11
4792--4842	18	2.9	18	91	5	79	41	0	0	58	0.98
4807--4840	3	11.3	3	87	0	50	41	0	0	58	0.98
4821--4873	26	2.2	25	80	16	58	45	3	1	49	1.31
5045--5106	16	3.6	16	70	21	54	50	1	1	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5047--5133	39	2.2	38	79	18	90	48	1	1	49	1.16
5088--5146	19	3.1	19	78	4	64	52	0	0	47	1.00
5063--5145	39	2.1	40	80	10	91	49	1	0	49	1.08
5438--5468	16	1.9	16	100	0	62	58	6	6	29	1.48
6133--6190	29	2.0	28	83	3	71	53	1	0	44	1.10
6275--7240	181	5.3	179	74	10	753	42	10	7	40	1.67
6601--6968	194	1.9	190	81	6	438	42	10	8	39	1.69
7097--7147	18	2.8	18	73	8	59	41	7	5	45	1.57
7457--7515	15	4.1	15	70	22	54	52	0	1	45	1.10
7502--7539	19	2.0	19	85	10	51	47	2	0	50	1.15
7701--7735	16	2.2	16	89	0	52	42	0	2	54	1.15
7858--8936	181	6.0	179	73	8	632	41	7	8	42	1.65
9057--9094	20	2.0	19	85	10	51	47	0	7	44	1.32
9151--9212	27	2.3	27	83	8	72	46	4	3	45	1.40
9590--9639	25	2.0	24	84	3	64	40	2	2	56	1.22
10031--10078	16	3.2	16	80	13	59	43	0	0	56	0.99
10664--11040	182	2.1	180	80	5	420	40	9	9	40	1.70
12463--12500	11	3.7	11	83	16	55	55	0	0	44	0.99
12985--13017	18	1.9	17	88	11	50	39	6	6	48	1.53
13759--13809	18	2.7	20	81	9	61	49	0	1	49	1.12
13765--14003	10	24.6	10	69	22	88	47	1	3	47	1.30
13786--13909	55	2.3	53	76	14	135	50	0	4	45	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13814--13951	17	7.8	16	65	23	55	48	1	4	45	1.31
13840--13947	12	8.5	13	69	19	50	46	0	4	48	1.29
13840--14000	9	17.4	9	66	26	56	45	1	4	47	1.33
13860--13980	37	3.4	35	78	16	122	47	2	4	46	1.35
13966--14002	19	1.9	19	100	0	74	48	0	2	48	1.15
14185--14531	194	1.8	191	82	6	450	42	9	8	38	1.69
14853--14901	18	2.8	18	72	25	50	59	4	0	36	1.17
14838--14904	26	2.6	27	72	13	68	59	5	0	34	1.22
15344--15385	17	2.4	18	84	8	59	35	0	2	61	1.09
15794--18506	181	15.1	180	73	8	1759	41	8	9	40	1.68
17079--17111	18	1.9	17	88	11	50	48	9	6	36	1.60
15794--18510	542	5.0	534	75	7	2099	41	8	9	40	1.68
18534--19138	181	3.4	177	78	7	567	37	10	9	42	1.72
19190--20564	181	7.6	179	78	5	1210	41	10	7	40	1.68
20532--20605	36	2.1	36	94	0	130	50	5	5	39	1.48
20642--20967	171	1.9	171	82	2	413	41	10	8	40	1.69
21635--21689	18	3.1	18	75	15	60	47	0	3	49	1.19
24070--24165	18	5.1	19	67	21	60	46	7	2	43	1.43
24287--24328	22	2.0	20	82	17	50	54	2	2	40	1.26
24454--24483	14	2.1	14	93	0	51	46	0	0	53	1.00
24596--24644	18	2.5	20	77	19	57	40	4	0	55	1.19
24908--24960	17	3.2	17	82	17	67	50	1	0	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24964--25002	19	2.1	19	85	9	53	46	2	2	48	1.29
25264--26095	181	4.6	180	79	6	821	41	8	10	40	1.69
25260--26090	180	4.6	180	79	6	831	41	8	10	40	1.69
25264--26095	360	2.3	359	81	4	960	41	8	10	40	1.69
26166--27357	176	6.7	174	73	10	712	40	7	10	41	1.68
27430--28819	178	7.8	174	72	9	604	38	7	10	42	1.69
27539--28544	356	2.8	351	74	9	876	38	7	10	43	1.68
28081--28628	179	3.1	174	76	6	417	38	7	10	43	1.67
29093--29189	47	2.2	47	83	10	125	44	3	2	50	1.29
29211--29351	56	2.4	59	79	11	139	47	2	2	47	1.28
29334--29492	29	5.3	28	70	22	69	52	1	0	45	1.13
29403--29490	15	5.6	16	68	20	53	53	0	0	46	1.00
29403--29490	20	4.5	19	71	20	67	53	0	0	46	1.00
29405--29496	9	9.6	9	70	22	55	53	0	0	46	1.00
29333--29614	26	10.1	27	67	23	90	50	1	0	47	1.15
29412--29603	37	5.2	39	70	22	114	51	1	0	47	1.07
30005--30034	14	2.1	15	93	6	53	40	0	0	60	0.97
30483--30537	26	2.2	24	81	15	58	49	3	1	45	1.30
30493--30554	26	2.3	27	84	15	76	48	1	0	50	1.10
31124--31176	19	2.8	20	73	23	60	43	1	0	54	1.11
31844--31886	22	2.0	20	86	8	59	51	0	0	48	1.00

Tables:   1

The End!