genome.fa.s288.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168113.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_358, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31741

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--352	40	8.7	42	91	8	563	22	18	23	36	1.95
10--352	82	4.2	82	94	3	581	22	18	22	37	1.95
359--408	6	8.5	6	80	8	50	84	16	0	0	0.63
359--409	18	2.9	18	88	2	68	84	15	0	0	0.63
368--409	17	2.4	17	88	4	57	85	14	0	0	0.59
363--409	8	6.1	8	80	16	55	85	14	0	0	0.61
600--648	16	2.7	19	78	15	59	32	0	6	61	1.21
604--798	69	2.9	63	75	19	166	27	2	4	66	1.22
591--694	16	6.6	16	67	20	51	25	0	7	66	1.18
722--763	17	2.4	18	84	8	59	16	7	2	73	1.15
1256--1297	20	2.2	20	86	4	59	23	23	23	28	2.00
1642--1688	12	4.1	11	82	12	51	12	2	4	80	0.94
1756--2106	59	5.9	58	85	10	442	44	7	13	34	1.72
1756--2106	122	2.9	117	86	9	469	44	7	13	34	1.72
1747--2122	181	2.1	180	86	8	539	47	7	12	32	1.69
3125--3174	21	2.3	23	77	19	63	28	0	6	66	1.15
3356--3396	21	2.0	21	90	0	64	36	2	0	60	1.10
3677--3732	21	2.7	21	78	10	53	66	3	1	28	1.19
4672--4723	16	3.4	15	80	12	61	73	0	1	25	0.94
4880--5081	50	4.1	50	78	9	191	43	20	9	26	1.82
4903--5081	99	1.8	99	85	7	256	44	19	7	28	1.77
5059--5094	14	2.6	14	91	4	56	47	11	0	41	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5073--5391	97	3.2	96	83	6	356	42	18	10	29	1.82
5073--5434	49	7.4	50	80	6	346	41	17	9	30	1.82
5073--5428	196	1.8	194	81	7	450	41	17	10	30	1.82
9574--9607	13	2.7	12	86	13	50	88	2	2	5	0.70
10585--10703	43	2.8	42	81	8	109	23	11	16	47	1.80
10626--10742	42	2.7	43	78	5	128	23	12	14	49	1.77
10705--10775	29	2.4	29	78	0	79	26	15	9	47	1.76
11048--11106	5	12.4	5	82	13	56	20	0	1	77	0.85
11041--11074	4	8.5	4	87	12	52	23	0	0	76	0.79
11041--11105	20	3.1	20	79	14	69	21	0	1	76	0.86
12113--12139	8	3.4	8	100	0	54	88	0	0	11	0.50
15889--16042	55	2.9	50	77	11	164	37	16	3	42	1.65
15863--16113	106	2.4	104	83	9	296	36	16	2	44	1.61
15853--16018	55	3.1	54	78	9	198	38	15	1	43	1.57
21152--21190	20	1.9	20	84	5	51	79	2	2	15	0.95
22035--22063	14	2.1	14	93	6	51	79	0	0	20	0.74
24258--24302	2	22.5	2	95	0	81	48	0	2	48	1.13
24450--24484	8	4.4	8	96	0	61	57	0	0	42	0.99
25051--25194	52	2.8	51	80	12	152	26	22	8	42	1.82
25231--25263	11	3.0	11	90	0	57	48	27	0	24	1.51
25508--25555	25	1.9	25	86	0	69	18	41	12	27	1.86
28922--28976	21	2.7	21	88	2	76	29	0	1	69	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29499--29555	21	2.7	21	78	8	53	66	3	1	28	1.18
30302--30346	23	2.0	23	86	8	65	31	13	11	44	1.78
30303--30352	23	2.3	22	83	13	59	26	12	10	52	1.70
30472--30511	22	1.9	22	90	10	66	80	0	20	0	0.72
30725--31266	48	11.0	49	73	13	224	41	19	10	28	1.85
30728--30926	49	4.1	49	80	7	210	41	20	10	27	1.85
30745--30926	97	1.9	97	88	4	278	42	19	9	28	1.82
30855--30976	62	2.0	63	91	1	201	42	20	8	28	1.81
30918--31266	48	7.3	49	81	9	339	41	18	10	28	1.84
30918--31233	139	2.2	144	81	8	362	42	19	10	27	1.84

Tables:   1

The End!