Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167854.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_124, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 76388
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Found at i:4129 original size:900 final size:894
Alignment explanation
Indices: 1919--19923 Score: 21578
Period size: 900 Copynumber: 20.4 Consensus size: 894
1909 CAGCATGTGT
* * * *
1919 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATAAGGGATAAGGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* * *
1984 GCCAATATAAGGGCCAAGTACCAGCACCAATCACACATCATGTGCGTACACCCCCCCGCACCCCC
66 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGC-CCCCC
* * * * * *
2049 AATTG-CTGGAACCACAATGCCGCCGGTCAGGTACTCCGACGATGCTCTGACGATGGTGCCCCAG
130 AATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGG
* * * * * * *
2113 GCAAAAAAAAAATATGACACCAGCACGTGCCCGAGCCAAGCATGTGC-CCCTGCAACCCCCGATC
194 GC-GAAAAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCC-GCAACCCTCGGTC
* ** * * *
2177 TGGTCCGATCAGACACTGGGAATGAACTCTGTATGGTTAAACTGGGAATGAACTCCGTATGCCTA
256 TGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * ** *
2242 AGTCAACCCATGAAACGAGCGTGCGGGTGCTGAACCGGCCAGAGGGGCAGGATGCGTAAGCCGGG
321 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGG
* ** * ** *
2307 GATTGGTCGGGTCCCCCCTACGTGCTGCCAATCCTACTACTGCAACCCTTGATCCAGTCTGATCT
386 GATCGGTCGGGTCCCCCCTACGTGCTGCTGATCCTGCTACTGCAACCC-TGATCTGGTCCGATCT
* * * * * * *
2372 TAGATTAGGAATGAA-TCACATATGCCTAAGCCAACCAACGAAACGAGTGGGCGGCCGGGCACTA
450 TAGACTGGGAATGAACTC-CGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTA
* * * *
2436 CGCCGACCAAAGATGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACT
514 CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
2501 TCTTAATATTTCTGCCATGCCAATGCCTTTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAA
579 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
2566 GCCTTCATGTGAATTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACGTTT
644 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * *
2631 TAGGGTTCGAGATTTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTAT-GTAGATGT
709 TACGGTTCGGGATTTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT-TGGTAGACGT
* *
2695 GATCCCTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTTC-AAGTGTACAGGATT
772 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC-TCGAAGTGTACAGGATT
* *
2759 TTGTGACCATTTGAAAAAAATGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAA
836 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
**
2818 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* ** *
2883 GCCAATATAAGGGCAAAGTAGAAGAACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCTCC
66 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-CCC-CC
* * * * * *
2948 CAATCGCCGGAACCCCAATGCCACCGGTCATGTTCTCCGATGATGCTTCGGCGATGGTGCCCTGG
129 CAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGG
* * * *
3013 GCGAAAAAAAAATGTGGCACCAACACATGCCCGAG-CCAGCATGTGCACCTGCAACCCTCAGTCC
194 GCG-AAAAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCT
* * * *
3077 GGTCCGATCTTACACTGGGAATGAACTCCATACGCTTAGACTGGGAATGAACTCCCTATGCCTAA
257 GATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
** * * * * * * *
3142 GTCAACCCATAAAACGAACGTGCGGGCGTTCAGCTGGCCAGAGAGGCAGGATGAACATGCCGGGG
322 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGG
* * * **
3207 ATC-GACTGGGTCCCCTCCTACGTGCTGCTTATCCTGTTACCACAACCCATGATCTGGTCCGATC
387 ATCGGTC-GGGTCCCC-CCTACGTGCTGCTGATCCTGCTACTGCAACCC-TGATCTGGTCCGATC
* * * * * * * *
3271 TTAGACTGGGAATGAACTCTGTCTGCCTAAGCCAATCGATGAAATGAGCGGACAGGCGAGCACAA
449 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTA
* *
3336 CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTGAGGCACA
514 CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
3401 TGTTCATATTTCTACCATGCCAATGCCATTTTAATGGCTTGTAAATTCATATAATGGTCCCTTAA
579 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
3466 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTCAAACTTTT
644 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * * * *
3531 GACGGTTCGGGATTTTTTAAAAATTTTTTTAGAAGGATTTTTAGCCCCAAACTTGGTAGACATGA
709 TACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
3596 TGCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGCGTACAGGATTTTG
774 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
*
3661 TGATCATTTGAAAAAAGTGTCCCCAGTTT-AGACACTTTAATGGCTACTGGCAGCAA
839 TGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAA
* **
3717 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTCGATGAGGGATATAGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
3782 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCGCCCCC
66 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCCGCCCCC
* * * * * ** * * *
3847 TCATTCGTCGAAACCTCAATGCCACCGGTCAGGTTTTTTGATGATGCTCCGGTGATAGTGCCCCG
129 -CAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
* * * * *
3912 GACGAAAAAAATATGCGGCACCAGCACATGCCAGAGCCTAGCATGTGCACCCGCAACCCACGATC
193 GGCGAAAAAAA-ATGTGGCACCAGCACATGCC-GAGCCCAGCATGTGCACCCGCAACCCTCGGTC
**
3977 TGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTATAT-CGCT
256 TGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC-CT
* **
4041 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGGAAGCTGG
320 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGG
* * * ** * *
4106 GGATCGGTCGGGTCCCCCCTACGTGCTACCGATCCTGCTGCCACAACCCTTGGT-TCGGTCTGAT
385 GGATCGGTCGGGTCCCCCCTACGTGCTGCTGATCCTGCTACTGCAACCC-TGATCT-GGTCCGAT
* * * *
4170 CTTAGACTAGGAATGAACTCCGTATGGCTAAGCCAACTGACGAAATGAGC-GAGCGGGCGGGCAC
448 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGA-CGGGCGGGCAC
* * ** *
4234 TACGGCGACCAGAGAGGCGGGATGCGCAAGCCGTGGAAAGATAGGGTGGCAGGTGGGTTTAGGCA
512 TACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
4299 CATCCTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCCTT
577 CATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* ** * *
4364 AAGCCTGCACATGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTTACGATTTTTGAAACTT
642 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * *
4429 TTTACAGTTTGGGATTATTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
707 TTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
4494 GATCCTTGTATTTTTGTTGGCATGCACAAAATAATTCAGGTAAAAACTCAAAGTGTACAGGATTT
772 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
* *
4559 TGTGACCATTTGAAAAAAGTGTCTCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
837 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
4617 ACCTGTAAAATCTCAAATGCTCTTTAAAGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGAG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* *
4682 GCCAATATAAGGGCCAAGTACCAGCACCAATCTCACATCATGT-CTGCACA-CCCCCCGCCTCAC
66 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GCACACCCCCCCGCC-C-C
** *
4745 CCAATCGTCGGAACCCCAATGCCGTTGGTCAGGTTCTCC-AGCGATGCTCCGACGATGGTGCCCC
128 CCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGCCCC
* ** * * * *
4809 GGGCAAAAAAAAATACGGCCCCAGCACATGCCCAAGCCCAGCTTGTGC-CCTCGCAACCCTCGAT
192 GGGCGAAAAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCACC-CGCAACCCTCGGT
* * * * * ** *
4873 TTGGTCTGATCTTACAGTGAGAATGAACTATGTATGCTTAGACTAGGAATGAACTCCGTATGCCT
255 CTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* *
4938 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGTGGCAGGATGCGCAAGCCG
320 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG-GGCAGGATGCACAAGCTG
* * * * **
5003 GGGATCGGTCGGGTCCCCCCTATGTGCTGCCGATCCTACTACTGCAACCCTCAGTCTGGTCTAAT
384 GGGATCGGTCGGGTCCCCCCTACGTGCTGCTGATCCTGCTACTGCAACCCTGA-TCTGGTCCGAT
5068 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----ACGGGCGGGCACT
448 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACT
*
5129 ATGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
513 ACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
5194 ATCTTCATATTTCTACCATGCCAGTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
578 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
*
5259 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTT
643 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * *
5324 TTACGGTTCGGGATTTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTAGACGTG
708 TTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * * *
5389 ATCCTTTTATTTTGGTTGGCAAGCAC-AAAAAATTCAGCTAAAAACTCCAAGTGTACAAGATTTT
773 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
5453 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
838 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
5510 ACCTGTAAAATCTCAAAATGC-CTCTTAAGGGGGTGTGAGTTCCTTAAGGTTTGATGAGGGATAC
1 ACCTGTAAAATCTC-AAATGCTCT-TTAAGGGGGTGTGAGTT-CTCAAGGTTTGATGAGGGATA-
**
5574 TGGGGGGCCAATATAAAGGGCCAAGTACCAGCACCCATCGCACATTCATGTGCGCACA-TGCCCC
62 --GGGGGCCAATAT-AAGGGCCAAGTACCAGCACCCATCGCACA-TCATGTGCGCACACCCCCCC
* * * * *
5638 GCTCCCCAATCGTCGGAACCCCAATGCCATCCGGTCATGTTTCTCCGACGATGCCTACGGTGAT-
123 GCCCCCCAATCGTCGGAACCCCAATGCC-GCCGGTCA-GGTTCTCCGACGATG-CTCCGGCGATG
* * *
5702 GTGCCCCGGGC-AAAGAAAAATGTGGCACCAACACCATGGCGAGCCCAGCCATGTGCACCTGCAA
185 GTGCCCCGGGCGAAA-AAAAATGTGGCACCAGCA-CATGCCGAGCCCAG-CATGTGCACCCGCAA
* *
5766 CCCGCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
247 CCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * * * *
5831 GTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGCACTCAACGGGCCAGAGAGGTAGGATGCG
312 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCA
5896 CAAGCTGGGGA---------T-----C-A-GT--TG--G----T-C--C-G-------G-T-T--
377 CAAGCTGGGGATCGGTCGGGTCCCCCCTACGTGCTGCTGATCCTGCTACTGCAACCCTGATCTGG
* * * * * * * *
5922 T--GATCTTAGACTAGGAATGAACTCCGTATGGCTAAGCCAACTGACAAAAAGAGCGGGCAGGCA
442 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCG
* * * * * **
5985 GGCACTACACCGACCAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGTGACAGGTGGGTTT
507 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
6050 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTGATGGCTTGTAAATTCATACAATGGT
572 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
6115 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
637 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
6180 AACTTTTTACAGGTTCGGGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
702 AACTTTTTAC-GGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
*
6244 AGACATGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
766 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
6308 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
831 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
6372 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
**
6437 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTACCCCCCA
66 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCA
* * * * * * ** * *
6501 ATCGCCAGAATCCCAATGTCGCCGGTCAGGTTCTCCGATGATGCTCTGATGATGGTGCCCTGGGT
131 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGC
* * * * ** * *
6566 G-AAAAAAATGCGGCACCAGCACATGCTCGGGCCTAACATGTGCACCCAAAACCCTCGGTCCGGT
196 GAAAAAAAATGTGGCACCAGCACATGC-CGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGAT
* * * *
6630 CCGATCTTACACTGAGAATAAACTCCATATGCTTAGACTGGCAATGAACTCCGTATGCCTAAGTC
260 CCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
6695 AACCCACGAAACGAGCGTGCGGGCACTTAACCGACCAGAAGAGCAGGATGCATAAG-TCGGGGAT
325 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCT-GGGGAT
* *
6759 CGG-CTGGGTGCCCCCC-A---GC-G-TG---CTGC--C-ACAACCCTCGATCTAGTCCGATCTT
389 CGGTC-GGGT-CCCCCCTACGTGCTGCTGATCCTGCTACTGCAACCCT-GATCTGGTCCGATCTT
* * * *
6811 AGAGTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGG-TGAGCGGCCACTAC
451 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGACGGGCGGGCACTAC
** * * *
6875 ATCGGCCAGAGAGGCGGGATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGCTTAGGCACAT
515 GCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* ** *
6940 CTTCATATTTTTGCTGTGCCAATGGCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
580 CTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
7005 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATATTTCATGATTTTTGAAACTTTTT
645 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * ** *
7070 ACGGTTCGAGA-TTTTGTAAAATTTTTTCAGCGGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
710 ACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * *
7134 CCTTGTATTTTTGTTGCCATGCATAAAACAATTCAGCTAAAAACTCTAAGTGTACAGGATTTTGT
775 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
*
7199 GACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
840 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
7254 ACCTGTAAAATCTCAAATGCTCTTTAA-AGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* *** *
7318 GCCAATATAAGGGCCAAGCACCAGCACCCATCATGCATCATGGGCGCACACCCCCCCGCCCCGCC
66 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-CCC-CC
* * * *
7383 CAATCG-CAGGAACCCCAATGCCGCCGGCCATGTTCTCCGACGATGCTCTGGAGATGGTGCCCCG
129 CAATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
* * * * **
7447 GGCAAAAAAAAATGTGGTACCAACACATGCTCGAGCCCAGCATGTACACCTACAACCCTCGGTCC
193 GGCGAAAAAAAATGTGGCACCAGCACATGC-CGAGCCCAGCATGTGCACCCGCAACCCTCGGT-C
*
7512 TG-TCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG-ACTCCGTATGCCTA
256 TGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* ** * * * * * **
7575 AGTTAACCCATAAAACGAGCGTGGGGGCGCTCAACCGGCTAGAGGGGTAGGATGCACATG-TCAA
321 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCT-GG
* * * * *
7639 GGATCGATTGGGTCCCCCACTGCGTGCTGCTGATCCTGCTACTGCAACCCACGATTCT-GTCTGA
385 GGATCGGTCGGGTCCCCC-CTACGTGCTGCTGATCCTGCTACTGCAACCC-TGA-TCTGGTCCGA
* * * *
7703 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGACGGGAGAGCAC
447 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCAC
* * * * ** * ***
7768 AATGTCGGCCAGAGAGGCGGGATGTGCAAGTTGTAGATCGATAGGGTGGTAGGTGGG-GCGGGCA
512 TACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
7832 CATGTTCATATTTCTACCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTT
577 CATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
7897 AAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTATCTATTTTTCACGATTTTTCAAACTT
642 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * *
7962 TTTACGGTTCGGGATTTTTTTAAAATTTTTTTAGAAGGATTTTTAGCCCCAAACTTGGTAGAAGT
707 TTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
** *
8027 GATCCTTGTATTTTTGTTCACATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTT
772 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
* *
8092 TGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAA
837 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
**
8150 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* * * * *
8215 ACGAATATAAGGGCTAAGTACCAGCACCCATTGCACATCATGTGCGCACA-CCCCCCACCCCCCA
66 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCA
** * * * *
8279 ATCACCGAAACCCCAAT---GCCGGTCA-GAT-T----C--T--T-CGGCGATGGTGCCCTGAGC
131 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGC
* * * * *
8330 GAAAAAAAATGTGGCA-CAACACATGCCCGAGCCCA-AATATGCACCCACAACCCTCGGTC-CAG
196 GAAAAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGA-
** * *
8392 TCTAATCTTACACTGGGAATGAACTCTGAATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
259 TCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
8457 CAACCCATGAAACGAGCGCGTGGGCACTCAGCCGACCAGAGGGGCATGATGCACAAGCTAGGGAT
324 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGAT
** * * ** * * *
8522 CGGTCGGGTCCCCCCTGTGTGCTGCCT-ATCCTACTGCCACAACCCTCAATCCGGTCCAATCTTA
389 CGGTCGGGTCCCCCCTACGTGCTG-CTGATCCTGCTACTGCAACCCT-GATCTGGTCCGATCTTA
* * * * *
8586 GACTGGGAATGAACGCCGTATGCCTAAGCTAATCGACGAAACGAGCGGGCAGGCGGGCACTACGC
452 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTACGC
** * *
8651 CGGCCAGAGAGGTAGGATGCGCAAGCCATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCT
517 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
** * *
8716 TCATATTTCTAACATGCCAATGCCATTTTTATGGCTTGTAAATTCAGACAATGGTCCCTTAAGCT
582 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* *
8781 TTCATGTGAAGTTTCCTGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
647 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * * *
8846 TGTTCGGGAGTTCTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCACACTTGGTAGACGTGATCC
712 GGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
8911 TTGTATTTTTGTTGGCATTCACAGAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
777 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
* * *
8976 CCATTTGGAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGCAGCAA
842 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
**
9029 ACCTGTAAAATCTCAAATGCTCTTT-AGGGGGATGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-TGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
* * * **
9093 GCCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCATGCCCCCC
65 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-CCCCC
* * * * *
9157 CAATCGTCGGAACCCAAATGACGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGA
129 CAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGG
* * * *
9222 GCGAAAAAAAATGTGGTACCAGCTCGTGCCCGAGCCCAGCATGTGCACCCACAA-CC-C--TC-G
194 GCGAAAAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTG
* *
9282 ----G----T-C-C-----A-G---TCCG-AT-CTTATATTGGGAATGAACTCCGTATGCCTAAG
258 ATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
9326 TCAAACCAC-AGAACGAGCGTGCGGGTGCTCAGTCGGCCAAAAGGGCAGGATGCACAAG-TCGGG
323 TCAACCCACGA-AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCT-GGG
** * * * * * ** * * * *
9389 GATCGACCGAGTCCCCCCCTGCGTGCTACCGATCCTGCTGCCACAACCCTCAGCCTGATCCAATC
386 GATCGGTCGGGT-CCCCCCTACGTGCTGCTGATCCTGCTACTGCAACCCTGA-TCTGGTCCGATC
* ** *
9454 TTAGACTGGGAAT-TACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGTGGGCACTA
449 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTA
* *
9518 CGCCGGCCAGAGAGGCGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
514 CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
9583 TCTTCATATTTCTGCCATGCCAATGCC-TCTTTTATGACTTGTAAATTCATACAATGGTCCTTTA
579 TCTTCATATTTCTGCCATGCCAATGCCAT-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * ** **
9647 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTTTATTTTTCATAATTTTCAAAACTTT
643 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * *
9712 TTATGGTTCGGGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTG
708 TTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
9777 ATCCTTGTATTTTTGTTGGCGTGCATAAAAAAATTCAGCTGAAACCTCGAAGTGTACAGGATTTT
773 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA-TTT
* *
9842 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTGCTGGCAGCAA
837 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
9900 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAGGAGGGATAGGGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* * * *
9965 GCCAATATAAGGGCCAAGTGCCAGCGCCCATCGCACATCATGTGCACACA-CCCCCCG-CCCCCT
66 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCA
* * * * * *
10028 ATCGTCGGAACCACAATGCCGCTGGTCAGGTTCTTCGACGATGCTCCGTCGATGGTGGCCCGAGC
131 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGC
** * * * * *
10093 GAAAAAAAATACGGCACCAGCACATGTTCGAGCCTAGTATGTGCACTCGCAACCCTCAGTCT-A-
196 GAAAAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGAT
*
10156 --G---TT---C-------G-A-T-C-T-TGC----ACTGGGAATGAACTTCGTATGCCTAAGTC
260 CCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* ** * ** * * *
10197 AACCCACGAAATGAGCACGTGGGCATTCAGCCGGCCAGAGGGGCAGGATACGCAAGCCGGGGATC
325 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGATC
* * * * ** * **
10262 GATCGAGTCCCCCCCTACGTGCTGCCGATCCTACTACCCCAACCCTCAGT-TCGGTCTAATCTTA
390 GGTCGGGT-CCCCCCTACGTGCTGCTGATCCTGCTACTGCAACCCTGA-TCT-GGTCCGATCTTA
* * * * * *
10326 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACAAAATGAGCGAACGGGCAGGCACTACGT
452 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTACGC
* *
10391 CGGCCAGAGAGGTGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
517 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * * *
10456 TCATATTT-T----TGTC-GTGCCATTTTTATGGCTTGCAAATTCATACAATGGTCCCTTATGCC
582 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
10515 CTCATGTGATGTTTCATGGCAAGAC-ACTCGTTTTCTTTTTTTCATGATTTTTGAAACTTTTTAC
647 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * *
10579 GGTTCGGGATTTTTTT-AAATTTTGTCAAAAGTAGTTTT-GCCCCAAACTTGGTAGACGTGATCC
712 GGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
10642 TTATATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGA
777 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
* *
10707 CCATTTGAAAAAAGTGTCACCATTTCAGACACTTTAATGGCTACTGGCAGTAA
842 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * ** ** *
10760 ACCTGTAAAATCTTACATGCTCATTAAGGGGGACTGAGTTCTTGAGGTTTGATTAGGGATAGGGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* * *** *
10825 GCCAATATATGGGCCAAGTACCAGCACCCATCACACATCATGCATGCACACCCCCTCGCCCGCCC
66 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCC-CCC
* *
10890 TAATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-ATCGATGCTCCGGTGATGGTGCCCCG
130 -AATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGCCCCG
* ** * * * *
10954 GGTGAAAAAAAATACGGCACCAGCACAGGCCTGAGCCTAACAAGTGCACCCGCAACCCTCGGTCT
193 GGCGAAAAAAAATGTGGCACCAGCACATGCC-GAGCCCAGCATGTGCACCCGCAACCCTCGGTCT
* * *
11019 GGTCCGATCTTACACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAA
257 GATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
11084 GTCAACCCACGAAATGAGTGTACGGGCGCTCAACCGGCCAGAGGGGTAGGATGCGCAAGCCGGGG
322 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGG
** * * * * * *
11149 ATCGGTCGGGTCCCCCCTTGTGTGCTACTGATCCTACTGCAGCAACCCTCAGTCCGGTCCGATCT
387 ATCGGTCGGGTCCCCCC-TACGTGCTGCTGATCCTGCTACTGCAACCCTGA-TCTGGTCCGATCT
* * *
11214 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCACTAC
450 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTAC
* * * * ***
11279 GTCGGCCAGAGAGACGGAATGCGCAAGCCGTGGATCGATACGGTGGTAGGTTTCTTTAGGCACAT
515 GCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
11344 CTTCATATTTATGCCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
580 CTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
**
11409 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT
645 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * *
11474 ATGGTT-GGAGATTTTTTTAAAATTTTTTCACAAGGAG-TTTGGCCCCAAACTTGGTAGATGTGA
710 ACGGTTCGG-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* *
11537 TCCTTGTATTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
774 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
* * *
11602 TGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTAGCAACAA
839 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
11658 ACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
** * *
11723 GCCAATATAA-AACCAAGTACCAGCACCCATCACGCATCATGTGCGCACA--------CCCCCCA
66 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCA
* * * *
11779 ATCGTCGGAACCCCAAT-CCGTCGGTCAGGTTCTCC-AGCGATGCTCTGGCAATGGTGCCCAGGG
131 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGGCGATGGTGCCCCGGG
* * ** * * *
11842 CG-AAAAAAATGTGGCTCCAGCACATGCTTGAGCCTTGCATGTGTACCCGTAACCCTCGATCT-A
195 CGAAAAAAAATGTGGCACCAGCACATGC-CGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGA
* * *
11905 GTCCGATCTTACACTGGGAATGAACTTCGTATGCTTAGAGTAGGAATGAACTCCGTATGCCTAAG
259 -TCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
11970 TCAACCCACGAAACAAGCGTGCAGGCACTCAGTCGGCCAGAGAGCCAGGATGCACAAG-TCGGGG
323 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCT-GGGG
* * *
12034 ATCGGTCGGGTCCCCCCTTACGTGCTGGTGATCCTGCTACTGCAACCCTCGAT-TCGATCTGATC
387 ATCGGTCGGGTCCCCCC-TACGTGCTGCTGATCCTGCTACTGCAACCCT-GATCT-GGTCCGATC
* * *
12098 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGTGGGCACTA
449 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTA
* * * * * ** * *
12163 CGTCGGCTAGAGAGACGAGATGCGCAAGCTGTGGATTAATAGGGTGGTAGGTCGGTTTAGGTACA
514 CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
12228 TCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
579 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
12293 GCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTCTCACGATTTTTGAAACTTTG
644 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* ** *
12358 TACGGTTCGGGATTTTTTTAAACTTTTTTTTGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGA
709 TACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * *
12423 ACCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTG
774 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
* *
12488 TGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAA
839 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
12544 ACCTGTAAAATCTTAAATGCTATTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAGGGATAGGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAGGGATAGGG
* * * *
12608 GGCCAATATGAGGGCCAAGTACTAGCACCCATCGCACATGATGTGTGCACACCGGCCCCCGGGCC
65 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC--CCCCC--G-C
* * *
12673 CCCCCAATCG-CTGGAACCCCAATG-CGCCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGC
125 CCCCCAATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
* * * * *
12736 CCCGGGCGAAAAAAAATATGGCACCAGCACATGCCTGAGCCTAGCATGTGTACCTGTAACCCTCG
189 CCCGGGCGAAAAAAAATGTGGCACCAGCACATGCC-GAGCCCAGCATGTGCACCCGCAACCCTCG
* * * * * * *
12801 ATCCGATCCGATCTTACACTGGGAATGAACTTCGTATGATTAGACTGGGAACGAACTTCATATGC
253 GTCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * **
12866 CTAAGTCAACCCATGAAACGAGCATGCAGGG-GCTCAACCGGCCAGAGAGGCAGGATAAACAAG-
318 CTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGC
* ** * * * * * * * *
12929 TCGGGGATCGGCCATGTCCCCCCTATGTGCTG-TCGATCCTACTGCCGTAACCCTCGGTCCGATC
382 T-GGGGATCGGTCGGGTCCCCCCTACGTGCTGCT-GATCCTGCTACTGCAACCCT-GATCTGGTC
* * * *
12993 TGATCTTAGACT-GGAATGACCTCCGTATGCCTAAGCCAACCGATGAAA--A--TGA-------G
444 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGG
*
13046 ---T--G--GG-CAGAGAGGCGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
509 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
13103 GCACATCTTAATAATTCTGCTATGCCAATGCCATTTTTATGGCTTGTAAAATCATACAATGGTCC
574 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
13168 CTTAAGCCTTCATGTGAAGCTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTTAAA
639 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* *
13233 CTTTTTACGGTTTGGGATTTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCCCACACTTGGTAGA
704 CTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
13297 CATGATCCTTGTAGTTTTT-TTGGCAAGCACAAAAAAATTCAGCTAAGAACTCGAGGTGTACAGG
769 CGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
* *
13361 ATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGAAA
833 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
13423 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* * * *
13488 GCCAATATATGGGCCAAGTACCAGCACCCATTGTACATCATGTACGCACACCCCTCCCCCGCCCC
66 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CC-CCCCCGCCCC
* * ** * * * *
13553 CCAATCGTTGGAACCTCAATGCCATCGGTCAGGTTCTTCGACGATGCTTCGACGATAGTGCCCCG
128 CCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
* * * *
13618 GGCGAAAAAAAAATGT-GCACAAACACATGCCCAAGCCCAGCATGTGCACCCGTAACCCTC-G--
193 GGCG-AAAAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCGCAACCCTCGGTC
*
13679 -G-TCCGA---T-C-C---G-AT---CT---TA--C----ACTGGGAATGAACTCTGTATGCCTA
256 TGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
13721 AGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCAGCTAGAGGGGCAGGATGCACAAG-TCGG
321 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCT-GG
** * * * * * *
13785 GGATCGACCGAGTCCCCCCTGCATGCTGCTGATCCTGCTACTGCAACCCTTGGTCCGGTCCGATA
385 GGATCGGTCGGGTCCCCCCTACGTGCTGCTGATCCTGCTACTGCAACCC-TGATCTGGTCCGATC
* * *
13850 TTAGACTGGGAAATGAACTTCGTATGCCTAAGCCAACTGACGAAACGAGCTGG-CGAGCGGGCAC
449 TTAGACTGGG-AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGACGGGCGGGCAC
** * *
13914 TACGCCTACCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGTTGGGTTTAGGCA
512 TACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
13979 CATCTTCATATTTTTGCCACGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTT
577 CATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
14044 AAGCCTTCGTGTGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTT
642 AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * * *
14109 TTCACTGTTCAGGATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCACACTTGGTAGACGC
707 TTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG-
14174 T-ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
771 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
14238 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
836 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* ** *
14297 ACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAAGGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* *
14362 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCACCCCCCA
66 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCA
* * * * *
14427 ATCG-CTAGAACCGCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGG
131 ATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGG
* * **
14491 CG---AAAAA---GGAACCAGCACAT-CTCGAGCCCAGCCTGTGCACCCATAA-CC-C--TC-GA
195 CGAAAAAAAATGTGGCACCAGCACATGC-CGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGA
* *
14544 TCCG---GT-C-C----AAT---CT---TA--C----ACTGGGAATGAACTCCGTTTGCCTAAGT
259 TCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
14588 CAACCCATGAAATGAGCATGTGAGCGCTCAGCGGGCCAGAGGGGCAGGATGCGCAAG-TCGGGGA
324 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCT-GGGGA
* * * * * * * *
14652 TCGATCAGGTCCCCCTTACGTGCTACTAAACCTGCTACTGCAACCCTTGGTCCGGTCCGATCTTA
388 TCGGTCGGGTCCCCCCTACGTGCTGCTGATCCTGCTACTGCAACCC-TGATCTGGTCCGATCTTA
* * * * * *
14717 GACTAGGAAT-AACTCCGTATGCCTAAGCTAACCAACGAAACGAGCGGGTC-GACGGGCACTATG
452 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGACGGGCGGGCACTACG
* * *
14780 CTGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATA-GGTGGTATGTGGGTTTAGGCACATC
516 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * * *
14844 TTCATATTTATGCCATGCCAATGCCATTTTTATGGCTTGTAAGTTCATACAGTGGTCCTTTAAGC
581 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
14909 CTTCATGTGAAGTTTCATGGAAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
646 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-
** * *
14974 ACGGTTCAAGATTTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCACACTTGGTAGACGTGA
710 ACGGTTCGGGA-TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
15039 TCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTGAGCTAAAAACTGGAAGTGTACTGGATTTTG
774 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
* *
15104 TGACCATTTGAAAAAAGTGTCCCCATTTTAGGCACTTTAATGGCTACTGGCAGCAA
839 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * **
15160 ACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGACTTCTCAAGGTTTGATGAGATATAGGGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
15225 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGCCCCCCA
66 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCA
* * * * * * *
15289 ATCGTCGGAACCACAATGGCACCGGTCAAGTTCTCTGACGATGCTCTGGCGATGGTGCCCCAGGC
131 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGC
* *
15354 GAAAAAAGAATGTGGCACCAGCACATGCTCGAGACCAACATGTGCACCCGCAA-CC-C--TC--A
196 GAAAAAA-AATGTGGCACCAGCACATGC-CGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGA
* * *
15413 ---G---TT---C-----A-G---TCCG-AT-CTTACACTGGGAATGAACTCCATATGCGTAAGT
259 TCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
15458 CAACCCACGAAACGAGCGTGTGGGCGCTCTGTCAGCCAGAGAGGCAGGATGCGCAAGCCGGGGAT
324 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGAT
* * * * * ** *
15523 TGGTCGGGTCCCGCCTATGTACTGTTGATCCTGCTACTGCAACCCTCGATCCAGTCCAATCTTAG
389 CGGTCGGGTCCCCCCTACGTGCTGCTGATCCTGCTACTGCAACCCT-GATCTGGTCCGATCTTAG
* * * *
15588 ACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGTGGGCACTACGCC
453 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTACGCC
* * *
15653 GGCCAGAGAGGCGAGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTT
518 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * * * *
15718 CATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTCAATTCATATAACGATCCCTTAAGCCT
583 CATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
*
15783 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGATTTTTGAAACTTTTTACG
648 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
* * * * *
15848 GTTTGGGACTTTTTTAAAATTTTTTCAGAGGGATTTTTGGCCCCAAACTTGGTAGACGTAATCCT
713 GTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* *
15913 TGTATTTTTGTTGGCATGCACAAAAACAATTCAGCTAAAAACTTGAAGTGTGCAGGATTTTGTGA
778 TGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
* * *
15978 CCATTTCAAAAAAGTGTCCCCATTTCAGGCACTTTAATGGCTGCTGGCAGCAA
842 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
16031 ACCTGTAAAATCTCAACTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
** * *
16096 GCCAATATAAGGGCCAAGTAAAAGCATCCATCACACATCATGTGCGCACA-CCCCCCGCCCCCCA
66 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCA
* * * * * * * *
16160 ATCGCCGGAACCCCAATGCCACCGGTCAGGATCTCCTATGATGCTCAGGAGATGGTGCCCCAGGC
131 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGC
*
16225 GAAAAAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAA-CC-C--TC--A
196 G-AAAAAAAATGTGGCACCAGCACATGC-CGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGA
* *
16284 ---G----T-C-C-------G-A-TCCG-AT-CTTACACTGGGAATGAACTCCGTATGCCTAAAT
259 TCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
16329 CAACCCACGAAACGAGCGTACAGGCGCTCAGCCAGCCAAAGGGGAAGGATGCGA-AAGCCGGGGA
324 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC-ACAAGCTGGGGA
* * ** ** * * **
16393 TCGGTCTGGTCTCCCCCTGCGTGCTGCCAATCCTG-TGGTCACAACCCTCAGTCCAGTCC-ATTC
388 TCGGTCGGGTC-CCCCCTACGTGCTGCTGATCCTGCTACT-GCAACCCTGA-TCTGGTCCGA-TC
* * * * **
16456 TTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCGATGAAATGAACGGGTGGGCGGGCACTA
449 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTA
* * * * **
16521 CACTGGCCAAAGAGACGGGATGCGCAAATCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
514 CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
16586 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
579 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
16651 GCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTT
644 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * ** * *
16716 TACAGTTTGGGA-TTTTTTAAAAAATTTTCTGAAGGAGTTTTGACCCC-AACTTGGTAGACGTGA
709 TACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
16779 TCCTTGAATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTG
774 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG
*
16844 TGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAA
839 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* **
16900 ACCTGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* * *
16965 GCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACA-CCCCCTGCCCCTTC
66 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCC-CC
* * * ** * * * *
17029 AATCGTGGGAACCCCAATGCCACCGGCCAGGTTCTCCGGTGATACTTCGGCAATGGTGCCCCTGG
130 AATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGG
* * * * ** * *
17094 CAAAAAAAAAAGTGGCACTAGCACATGCTCGAGCCTAGCATGTGCACCCATAACCCTCGATCTGG
195 CGAAAAAAAATGTGGCACCAGCACATGC-CGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGA
** * *
17159 TCCGATCTTATGCTGGGAATGAACTCC--ACGGCTTAGATTGGGAATGAACTCCGTATGCCTAAG
259 TCCGATCTTACACTGGGAATGAACTCCGTA-TGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
17222 TCAACCCACGAAACGAGCATGCAGGCGCTTAGCCAGCCAGAGGGGCAGGATGCACAAGCTGGGGA
323 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGA
* * * * * * * *
17287 TCAGTCGGGTCCCCCCCTACGTGGTGC-CATCCTACTACTGCAACCCTTGGTCTAGACCAATCTT
388 TCGGTCGGGT-CCCCCCTACGTGCTGCTGATCCTGCTACTGCAACCC-TGATCTGGTCCGATCTT
* * * * *
17351 AGATTGGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGAGGCCACTATG
451 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTACG
* * * *
17416 TCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGTTAGGTGGGTTTAGGAACATC
516 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
17481 TTCATATTTCTGCCCTGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGC
581 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *** *
17546 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTATGATTTCCAAAATTTTTTA
646 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * * * * *
17611 CAGTGCGAGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCACCAAACTTGGTCGATGTGATC
711 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
17676 CTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTG
776 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
* * *
17741 CCCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCGGCAA
841 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
17795 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
17860 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCGC
66 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCC-C
* * * * * *
17925 AATCATCGGAACCCCAATGCCGTCGGTTAGGTTCTCTGGCGATGCTCCAGG-GATGGTGCCCCGT
130 AATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-GGCGATGGTGCCCCGG
* * * ** * *
17989 GCGAAAAAGAATGTGGCAACAGCACATGCCCAAGAACAGCATGTGCACCCACAACCCTCGGTCCG
194 GCGAAAAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTG
* * *
18054 ATCCAATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCATAAG
258 ATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * * *
18119 TCATCCCACAAAATGAGCGTACGGGCGCTCAACCGACCAGAGAGGCAGGATGCACAAGCCGGGGA
323 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGA
* * * * * *
18184 TCGATCGGGTCCCCCCCTACGTGCTGCTGATCCTACTGCTGCAACCCTCAATGTGGTTCGATCTT
388 TCGGTCGGGT-CCCCCCTACGTGCTGCTGATCCTGCTACTGCAACCCT-GATCTGGTCCGATCTT
* * * * *
18249 AGACTGGGAATGAAGTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGATGGGCGAGCACTATG
451 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTACG
* * *
18314 CCGACCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATC
516 CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* * *
18379 TTTATATTTTTGCTATG---A-GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
581 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
18440 CTTCATGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
646 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* ** * *
18505 AGGTTCAAGATTTTTTTAAAATTTTTCCAGAAGGAGTTTT-GCCCCAAACTTGGTAGACATGATC
711 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * * *
18569 CTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGACTTTGTG
776 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
*
18634 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAA
841 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
18688 ACCTGTAAAATCTTAAATGCTCTTTCAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* * *
18753 GCCAATATAAGGGCCCAGTACCAGCACCCATCACACATCATATGCGCACACCCCCCCGCCCCCCA
66 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCA
* * * * * *
18818 ATCGTCGGAACCCTAATGCCACCGGTCAGGTTCTCTTG-CGATGCTCCGACTATGGTGCCCCGAG
131 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC-CGACGATGCTCCGGCGATGGTGCCCCGGG
* *
18882 CGAAAAAAAATGCGGCACCAGCACATGCCCGAG-CCATGCATGTGCACCCGTAACCCTCGGTCTG
195 CGAAAAAAAATGTGGCACCAGCACATG-CCGAGCCCA-GCATGTGCACCCGCAACCCTCGGTCTG
* * *
18946 ATCTGATGTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
258 ATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
19011 TCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGGGGA
323 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGA
* * * * * * * *
19076 TC-GACTGGGTCCCCCCTTGCATGCTGCCGATCTTGCTGCTGCAACCCTTGGTCCGGTCCGATCT
388 TCGGTC-GGGTCCCCCC-TACGTGCTGCTGATCCTGCTACTGCAACCC-TGATCTGGTCCGATCT
* ** * *
19140 TAGACTGGGAACGAACTCCGTATGCCTAAATCAACTGACGAAACGAGCAGG-CGGGCGGGCATTA
450 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGACGGGCGGGCACTA
* * * *
19204 CACCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACA
514 CGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
19269 TCTTCATATTTCTGCCATGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
579 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
19334 GCCTTCATGTGAAGTTTCATGGCTAGACGACTTGTTTTCTATTTTTCATGATTTTT-AAATTTTT
644 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTT
* * * *
19398 TTACAGTTCGAGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTG
708 TTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
19463 ATCCTTGTATTTTTTTTGGCATGTATAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTT
773 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* * *
19528 GAGACCATTTGAAAAAAGTGTCCCCATTTTAGACATTTTAATGGCTACTGGCAGCAA
838 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * * *
19585 ACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGACAGGGC
1 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* *
19650 GCCAATATAAAGGG-CAAGTACCAGCACCAATCGCACATCATGTGTGCACACCCCCCCCCGTCCC
66 GCCAATAT-AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCCG-CCC
* * * * *
19714 CCCAATCGTCGAAACCCCAACGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGGTGGTGCCCC
127 CCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
* * * * * * *
19779 GGG-GGAAAAAAATGCGACACCAGCATATGCCCAAGCCCAGCATGTGCACTCGTAACCCTCGGTC
192 GGGCGAAAAAAAATGTGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCGCAACCCTCGGTC
* * * *
19843 TGATCCGATCTTACGCTAGGAATGAACTCCGTATGCTTAGACTGGGACTAAACTCCGTATGCCTA
256 TGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
19908 AGCCAACCGACGAAAC
321 AGTCAACCCACGAAAC
19924 AAACTGGCGG
Statistics
Matches: 14877, Mismatches: 1841, Indels: 776
0.85 0.11 0.04
Matches are distributed among these distances:
850 1 0.00
851 139 0.01
852 155 0.01
853 28 0.00
854 37 0.00
855 38 0.00
856 30 0.00
857 12 0.00
858 47 0.00
859 1 0.00
860 176 0.01
861 260 0.02
862 542 0.04
863 343 0.02
864 349 0.02
865 21 0.00
866 8 0.00
867 6 0.00
868 6 0.00
869 504 0.03
870 885 0.06
871 813 0.05
872 442 0.03
873 204 0.01
874 262 0.02
875 4 0.00
876 3 0.00
877 26 0.00
878 277 0.02
879 759 0.05
880 249 0.02
881 157 0.01
882 376 0.03
883 22 0.00
884 136 0.01
885 572 0.04
886 254 0.02
887 49 0.00
888 6 0.00
889 12 0.00
890 254 0.02
891 21 0.00
892 392 0.03
893 633 0.04
894 621 0.04
895 427 0.03
896 658 0.04
897 651 0.04
898 588 0.04
899 729 0.05
900 1228 0.08
901 457 0.03
902 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCA
ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGC
GAAAAAAAATGTGGCACCAGCACATGCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGATC
CGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGATCG
GTCGGGTCCCCCCTACGTGCTGCTGATCCTGCTACTGCAACCCTGATCTGGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTACGCCGGC
CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
CGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
Found at i:5813 original size:26 final size:26
Alignment explanation
Indices: 5784--5836 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
5774 CTGATCCGAT
5784 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5810 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
5836 C
1 C
5837 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:7570 original size:25 final size:26
Alignment explanation
Indices: 7520--7571 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
7510 CCTGTCTGAT
7520 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
7546 CTTAGACTGGGAATG-ACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
7571 C
1 C
7572 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:8450 original size:26 final size:26
Alignment explanation
Indices: 8398--8450 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
8388 CCAGTCTAAT
*
8398 CTTACACTGGGAATGAACTCTGAATG
1 CTTACACTGGGAATGAACTCCGAATG
* *
8424 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGAATG
8450 C
1 C
8451 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGAATG
Found at i:11056 original size:26 final size:26
Alignment explanation
Indices: 11027--11079 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
11017 CTGGTCCGAT
*
11027 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
11053 CTTAGATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
11079 C
1 C
11080 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18097 original size:26 final size:26
Alignment explanation
Indices: 18061--18113 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
18051 CCGATCCAAT
*
18061 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
18087 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
18113 C
1 C
18114 ATAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18990 original size:26 final size:26
Alignment explanation
Indices: 18954--19005 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
18944 TGATCTGATG
18954 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
18980 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
19006 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:20608 original size:739 final size:719
Alignment explanation
Indices: 19138--20621 Score: 1897
Period size: 739 Copynumber: 2.0 Consensus size: 719
19128 CCGGTCCGAT
* * * * * * *
19138 CTTAGACTGGGAACGAACTCCGTATGCCTAAATCAACTGACGAAACGAGCAGGCGGGCGGGCATT
1 CTTAGACTGGGAACAAACTCCGTATGCCTAAACCAACCGACGAAACAAACAGGCGGGCAGGCACT
* *
19203 ACACCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAAC
66 ACACCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGACAGGGTGGTAGGTGGGTTTAGGAAC
* * *
19268 ATCTTCATATTTCTGCCATGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
131 ATCTTCATATTTCTACCATGCCAATGCCAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * * * *
19333 AGCCTTCATGTGAAGTTTCATGGCTAGACGACTTGTTTTCTATTTTTCATGATTTTTAAATTTTT
196 AGCCTTCATGTGAACTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAATCTTT
*
19398 TTACAGTTCGAGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTG
261 TTACAGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTG
* * * *
19463 ATCCTTGTATTTTTTTTGGCATGTATAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTT
326 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* * *
19528 GAGACCATTTGAAAAAAGTGTCCCCATTTTAGACATTTTAATGGCTACTGGCAGCAAACCTGTAA
391 GAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAA
19593 AATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGACAGGGCGCCAATAT
456 AATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGACAGGGCGCCAATAT
* *
19658 AAAGGGCAAGTACCAGCACCAATCGCACATCATGTGTGCACACCCCCCCCCGTCCCCCCAATCGT
521 AAAGGGCAAGTACCAGCACCAATCACACATCATGTGCGCACA------------CCCCCAA-C-T
* ** * **
19723 CGAAACCCCAACGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGGTGGTGCCCCGGGGGAAAA
572 CG--A---C-ACGCCG-CGGTCAGGTTATCCGACGATGCTCCGACGATGGTGCCCCGGGAAAAAA
* *
19788 AAATGCGACACCAGCATATGCCCAAGCCCAGCATGTGCACTCGTAACCCTCGGTCTGATCCGATC
630 AAATGCGACACCAGCACATGCCCAAGCCCAGCATGTGCACTCGCAACCCTCGGTCTGATCCGATC
19853 TTACGCTAGGAATGAACTCCGTATG
695 TTACGCTAGGAATGAACTCCGTATG
* *
19878 CTTAGACTGGG-ACTAAACTCCGTATGCCTAAGCCAACCGACGAAACAAACTGGCGGGCAGGCAC
1 CTTAGACTGGGAAC-AAACTCCGTATGCCTAAACCAACCGACGAAACAAACAGGCGGGCAGGCAC
* * * *
19942 TACGCTGGCCAGAGAGGCGGGATGTGCAAGCCATGGATCGACAGGGTGGTAGGTGGGTTTAGGCA
65 TACACCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGACAGGGTGGTAGGTGGGTTTAGGAA
* * **
20007 CATGTTCATATTTTTACTGTGCCAATG-CAATTTTATGGCTTGTAAATTCATACAATGGTCCCTT
130 CATCTTCATATTTCTACCATGCCAATGCCAATTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
20071 AAGCCTTCCA-GTGAACTTTAATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTTGAAA-C
195 AAGCCTT-CATGTGAACTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT-AAATC
* * *
20134 TTTTTACGGTTCG-GAATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTCA-
258 TTTTTACAGTTCGAG-ATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACCTGGT-AG
*
20197 CCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
321 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
*
20262 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACC
386 ATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACC
* * * *
20327 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG-GCC
451 TGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGACAGGGCGCC
* *
20391 AATA-AAAGGGCCAATTACCAGCACCCATCACACATCATGTGCGCACA-CCCCAA-T-G-C-CG-
516 AATATAAAGGG-CAAGTACCAGCACCAATCACACATCATGTGCGCACACCCCCAACTCGACACGC
* *
20449 C-CGGTCAGGTTATCCGGCTATGCTCAC-ACGATGGTGCCCCGAGCGAAAAAAAAATGCTG-CAC
580 CGCGGTCAGGTTATCCGACGATGCTC-CGACGATGGTGCCCCG-G-GAAAAAAAAATGC-GACAC
* * * * * *
20511 CAGCACATGCCCGAGCCTAGCATGTGCACTCGCAACCCTCGGGT-TCGGTGCGATCTTACACTGG
641 CAGCACATGCCCAAGCCCAGCATGTGCACTCGCAACCCTC-GGTCT-GATCCGATCTTACGCTAG
20575 GAATGAACTCCGTATG
704 GAATGAACTCCGTATG
* * ** *
20591 CTTAGACTAGTAATGAACTCTGTATGCCTAA
1 CTTAGACTGGGAACAAACTCCGTATGCCTAA
20622 GTCAACCCAT
Statistics
Matches: 659, Mismatches: 72, Indels: 53
0.84 0.09 0.07
Matches are distributed among these distances:
710 32 0.05
711 2 0.00
712 52 0.08
713 60 0.09
714 1 0.00
715 1 0.00
721 1 0.00
722 1 0.00
725 6 0.01
737 6 0.01
738 40 0.06
739 319 0.48
740 138 0.21
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Consensus pattern (719 bp):
CTTAGACTGGGAACAAACTCCGTATGCCTAAACCAACCGACGAAACAAACAGGCGGGCAGGCACT
ACACCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGACAGGGTGGTAGGTGGGTTTAGGAAC
ATCTTCATATTTCTACCATGCCAATGCCAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCATGTGAACTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAATCTTT
TTACAGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
GAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAA
AATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGGTTGATGAGGGACAGGGCGCCAATAT
AAAGGGCAAGTACCAGCACCAATCACACATCATGTGCGCACACCCCCAACTCGACACGCCGCGGT
CAGGTTATCCGACGATGCTCCGACGATGGTGCCCCGGGAAAAAAAAATGCGACACCAGCACATGC
CCAAGCCCAGCATGTGCACTCGCAACCCTCGGTCTGATCCGATCTTACGCTAGGAATGAACTCCG
TATG
Found at i:21782 original size:846 final size:850
Alignment explanation
Indices: 19878--23237 Score: 3274
Period size: 846 Copynumber: 3.8 Consensus size: 850
19868 ACTCCGTATG
* * * **** * *
19878 CTTAGACTGGGACTAAACTCCGTATGCCTAAGCCAACCGACGAAACAAACTGG-CGGGCAGGCAC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGTGC-GGACAGGCGGGCAC
* * * * *
19942 TACGCTGGCCAGAGAGGCGGGATGTGCAAGCCATGGATCGACAGGGTGGTAGGTGGGTTTAGGCA
65 TACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * *
20007 CATGTTCATATTTTTACTG-TGCCAATG-CAATTTTATGGCTTGTAAATTCATACAATGGTCCCT
130 CATTTTCATATTTTTGC-GATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * ** * *
20070 TAAGCCTTCCA-GTGAACTTTAATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTTGAAAC
194 TAAGCCTT-CATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTT-AAAA
* * *
20134 TTTTTACGGTTCGGAATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTCA-C
257 TTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT-AGA
* * *
20198 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
321 CGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
20263 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCT
386 TTTTGTGACCATTTG--AAAA--GT--CCA--T-----AC--T-A-AG--ACT----G-------
* * *
20328 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG-GGGCCA
421 G----A---C---T-CTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCGAGCCA
* * *
20392 ATAAAAGGGCCAATTACCAGCACCCATCACACATCATGT--G---------CG-----C-A-C--
475 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCGCCCCCCAATCAT
* * * * *
20437 ----ACCCCAATGCCGCCGGTCAGGTTATCCGGCTATGCTCACACGATGGTGCCCCGAGCGAAAA
540 GGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCCACGATGGTGCCCTGAGCGAAAA
* * * *
20498 AAAAATGCTGCACCAGCACATGCCCGAGCCTAGCATGTGCACTCGCAACCCTCGGGTTCGGTGCG
605 AAAAGTG--GCACCAGCACATGCCCGAGCCCAGCATGTGCACTCGCAACCCTC-GGTCCGGTCCG
* * *
20563 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTAGTAATGAAC-TCTGTATGCCTAAGTCAA
667 ATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAA
* * * *
20627 CCCATGAAACAAGCGTGCGGGCGCTCAGCAAGCCAAAGGGGCAGGATGCATTAGCCGGGGATCGA
731 CCCATGAAACGAGCGTGCGGGCGCTCAGC-GGCCAAAGGGGCAGGATGCGTAAGCCGGGGATCGA
* * * * ** ** * * *
20692 CCGGGTCCCCCCCTGCATGCTGCTGGTCCTACTGCCACAACCCTCAGTTCGGTCAAAA
795 CCGGGT-CCCCCCTGCGTGCTGCCGATCCTGCTATCGTAACCCTCGGTCCGGT-AAAT
* * * *
20750 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAACCGACGGAATGTGCGGGCAGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGTGCGGACAGGCGGGCACT
* *
20815 ACACCGGCCAGATAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
66 ACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
20880 ATTTTCATATTTCTGCTG-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
131 ATTTTCATATTTTTGC-GATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
20944 AAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCATTTTCTA-TTTTCTACGATTTTTTAAATT
195 AAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTC-ACGATTTTTAAAATT
21008 TTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
259 TTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
21073 CATCCTTTTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTATAAACTCGAAGTGTACAGGATT
324 GATCCTTTTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
21138 TTGTGACTATTTGAAAA-T-C-T-C-AA-A-T-G-CT-T-TTTAAGGGAGTGTGAGTTCTCGAGG
388 TTGTGACCATTTGAAAAGTCCATACTAAGACTGGACTCTCTTTAAGGGAGTGTGAGTTCTCGAGG
* * * * *
21192 TTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACTAGCACCCATCGTACATCATGTGCGC
453 TTTGATGAGGGATAGCGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
21257 ACACCCTCCCCCGCCCCCCCAATCATGGGAACCCCAATCCCGTCGGTCAGGTTCTCCAACAATGC
518 ACA---ACCCCCG-CCCCCCAATCATGGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGC
* ** * * **
21322 TCCCTCGATGGTGCCCTGTTCGAAAAAAACGTGGCACTAGCACATGATCGAGCCCAGCATGTGCA
579 TCCCACGATGGTGCCCTGAGCGAAAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCA
* * *
21387 CTCGCAACCCTCAGTCCGATCCGATCTTACATTGGGAATGAACTCTGTATGCTT-GACTGGGAAT
644 CTCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
* * ** *
21451 AAACTTCGTATGCCTAAGTCAACCCATGAAACGAGAGTGCGGGCGCTCAGTCGGTTAGAGGGGCA
709 GAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG-CGGCCAAAGGGGCA
* ** * *
21516 GGATGCGTAAGCCGAGGATCGACCATGTCCCCCACTGCGTGCTACCGATCCTGCTATCGTAAACC
773 GGATGCGTAAGCCGGGGATCGACCGGGTCCCCC-CTGCGTGCTGCCGATCCTGCTATCGTAACCC
* *
21581 TTGGTCCGGTATGAT
837 TCGGTCCGGTA-AAT
* * * * * *
21596 CTTAGACTGGGAATGAACTCCATATGCCTAGGCCAACCGACAAAATGTGCAGACGGGTGAGCACT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGTGCGGACAGGCGGGCACT
* * *
21661 ATACCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGAAAGGGTGGTAGGTGGGTTTAGGCAC
66 ACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
21726 ATCTTCATATTTTTGCGATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
131 ATTTTCATATTTTTGCGATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
21791 A-CCTTCATGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAAATTT
196 AGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTT-AAAATTT
*
21855 TTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC-AA-TTGGTAGACGTG
260 TTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
21918 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTT
325 ATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
21983 GTGACCATTTGAAAAAAGTGTCCCCATTCCAAACACTTTAATGGCTACTGGCAGCAAACCTACCT
390 GTGACCATTTG--AAAA--GT--CCA-T------AC--TAA--G--ACT-G--G---A-CT--CT
*
22048 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCGAGCCAATATAAGGGCCAAGTAC
427 CTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCGAGCCAATATAAGGGCCAAGTAC
* *
22113 CAGCACCCATCGCACATCATGTGCGCACAACCCCCGCCCCCCAATCGTTGGAACCCCAATGCCGC
492 CAGCACCCATCGCACATCATGTGCGCACAACCCCCGCCCCCCAATCATGGGAACCCCAATGCCGC
* * * * *
22178 CTGTCAAGTTCTCCGACGATGCTCCGACGATGGTG-CCTCGGGCGAAAAAAAATGTGGCACCAGC
557 CGGTCAGGTTCTCCGACAATGCTCCCACGATGGTGCCCT-GAGCGAAAAAAAA-GTGGCACCAGC
* * *
22242 ACATGCCCGAGCCCAGCATGTG--CTCCCACACCCTCGGTCTGGTCCGATCTTGCACTGGGAATG
620 ACATGCCCGAGCCCAGCATGTGCACTCGCA-ACCCTCGGTCCGGTCCGATCTTACACTGGGAATG
* * * *
22305 AACT-TCGTATGGTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
684 AACTCT-GTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
* * * *
22369 CGGGTGCTCAGCCGGCCAAAGGGGTAGGATGTGTAAGCCGGGGATCGGCCGGGTCCCCCCTGCGT
748 CGGGCGCTCAG-CGGCCAAAGGGGCAGGATGCGTAAGCCGGGGATCGACCGGGTCCCCCCTGCGT
* * * * *
22434 GCTGCCAATCCTGCTATCGTAACCCTCGATCTGATCCAAT
812 GCTGCCGATCCTGCTATCGTAACCCTCGGTCCGGT-AAAT
* * *
22474 CTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGACAGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGTGCGGACAGGCGGGCACT
* * * * **
22539 ACGCCGGTCGGAGAGGCGGGATGCGCAAGCTGTGGATCGATACAGTGGTAGGTGGGTTTAGGCAC
66 ACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
22604 ATTTTCATATTTTTGCCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
131 ATTTTCATATTTTTGCGATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
22669 AGCCTTCATGTGAAGTTTCATGGCAAGATGAA-TTGTTTTCTATTTTTCACGATTTTTGAAACTT
196 AGCCTTCATGTGAAGTTTCATGGCAAGA-CAACTCGTTTTCTATTTTTCACGATTTTT-AAAATT
* * * * *
22733 TTTACGGTTTGGGATTTTTTTAAAATTTTTTCAGAGGGATTTTTGGCCCCAAACTTGATAGACGA
259 TTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
*
22798 GAT-CTTTGTATTTTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATT
324 GATCCTTT-TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
22861 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGT
388 TTGTGACCATTTG--AAAA--GT--CCA--T-----AC--TAA--G--ACT----G-------G-
* * * *
22926 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAC
422 ---A---C---T-CTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCGAGCCAAT
* * ** * *
22991 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCAC-CCACCCCTTACCCCCCAATCGTC
477 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCC-CGCCCCCCAATCATG
* * * * * * * *
23055 GAAACCCTAATACCGCCGGTCAGGTTCTCCGACGATGCT-CCAGTGATGGTGCCCCGGGTGAAAA
541 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCCA-CGATGGTGCCCTGAGCG-AAA
* * *
23119 AAAAATGTGGCACCAGCACATGCCTGAGCCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCG
604 AAAAA-GTGGCACCAGCACATGCCCGAG-CCCAGCATGTGCACTCGCAACCCTCGGTCCGGTCCG
*
23184 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAAC-TCTGTATGC
667 ATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTC-GTATGC
23238 TTAGACTGGG
Statistics
Matches: 2123, Mismatches: 249, Indels: 209
0.82 0.10 0.08
Matches are distributed among these distances:
821 38 0.02
822 40 0.02
824 2 0.00
827 1 0.00
835 1 0.00
836 2 0.00
842 1 0.00
843 63 0.03
844 20 0.01
845 58 0.03
846 349 0.16
847 40 0.02
848 42 0.02
850 55 0.03
851 2 0.00
852 1 0.00
853 1 0.00
856 1 0.00
860 1 0.00
862 1 0.00
863 2 0.00
865 1 0.00
868 2 0.00
869 1 0.00
871 7 0.00
872 212 0.10
873 144 0.07
877 9 0.00
878 317 0.15
879 228 0.11
880 88 0.04
881 33 0.02
882 87 0.04
883 1 0.00
888 2 0.00
889 3 0.00
891 1 0.00
892 8 0.00
893 146 0.07
894 34 0.02
895 26 0.01
896 48 0.02
897 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (850 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGTGCGGACAGGCGGGCACT
ACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATTTTCATATTTTTGCGATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTAAAATTTT
TACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAGTCCATACTAAGACTGGACTCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGCGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
ACCCCCGCCCCCCAATCATGGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCCACG
ATGGTGCCCTGAGCGAAAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTCGCAA
CCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTC
GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCGGCCAAAGGGGCAGGATGCGT
AAGCCGGGGATCGACCGGGTCCCCCCTGCGTGCTGCCGATCCTGCTATCGTAACCCTCGGTCCGG
TAAAT
Found at i:23050 original size:878 final size:877
Alignment explanation
Indices: 21151--23237 Score: 2546
Period size: 878 Copynumber: 2.3 Consensus size: 877
21141 TGACTATTTG
* *
21151 AAAATCTCAAATGCTTTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * ***
21216 ATAATGGCCAAGTACTAGCACCCATCGTACATCATGTGCGCACACCCTCCCCCGCCCCCCCAATC
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-CG-ACACCCACCCCTTACCCCCC-A--
* * * * **
21281 ATGGGAACCCCAATCCCGTCGGTCAGGTTCTCCAACAATGCTCCCTCGATGGTGCCCTGTTCG-A
126 AT-GG-A--CC---GCC-T--GTCAGGTTCTCCGACGATGCT-CCACGATGGTGCCC-GGGCGAA
* * ** * * * *
21345 AAAAAACGTGGCACTAGCACATGATCGAGCCCAGCATGTGCACTCGCA-ACCCTCAGTCCGATCC
179 AAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTG--CTCCCACACCCTCGGTCTGGTCC
* * *
21409 GATCTTACATTGGGAATGAAC-TCTGTATGCTT-GACTGGGAATAAACTTCGTATGCCTAAGTCA
242 GATCTTACACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * ** *
21472 ACCCATGAAACGAGAGTGCGGGCGCTCAGTCGGTTAGAGGGGCAGGATGCGTAAGCCGAGGATCG
306 ACCCACGAAACGAGAGTGCGGGCGCTCAGCCGGCCAAAGGGGCAGGATGCGTAAGCCGAGGATCG
* * * * * **
21537 ACCATGTCCCCCACTGCGTGCTACCGATCCTGCTATCGTAAACCTTGGTCCGGTATGATCTTAGA
371 ACCAGGTCCCCCACTGCGTGCTACCAATCCTGCTATCGTAAACCTCGATCCGATACAATCTTAGA
* * * * * *
21602 CTGGGAATGAACTCCATATGCCTAGGCCAACCGACAAAATGTGCAGACGGGTGAGCACTATACCG
436 CTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCAGACAGGCGAGCACTACACCG
**
21667 GCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGAAAGGGTGGTAGGTGGGTTTAGGCACATCTTC
501 GCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGAAACAGTGGTAGGTGGGTTTAGGCACATCTTC
*
21732 ATATTTTTGCGATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCTTC
566 ATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCTTC
* *
21797 ATGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAAATTTTTACGGT
631 ATGTGAAGTTTCATGGCAAGACGAACCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGT
* *
21862 TCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAATTGGTAGACGTGATCCTTGTA
696 TCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAATTGATAGACGAGATCCTTGTA
21927 TTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
761 TTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
21992 TGAAAAAAGTGTCCCCATTCCAAACACTTTAATGGCTACTGGCAGCAAACCT
826 TGAAAAAAGTGTCCCCATTCCAAACACTTTAATGGCTACTGGCAGCAAACCT
* *
22044 ---A---C-----CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCGAGCCAAT
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
22098 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCGCCCCCCAATCGTTG
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-CG-AC-A----C-CCACCC---C-TT-
* *
22163 GA-ACCCCAAT-G-CCGCCTGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCTCGGGCGAAA
118 -ACCCCCCAATGGACCGCCTGTCAGGTTCTCCGACGATGCTCC-ACGATGGTGCC-CGGGCGAAA
22225 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTCCCACACCCTCGGTCTGGTCCGAT
180 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTCCCACACCCTCGGTCTGGTCCGAT
* * *
22290 CTTGCACTGGGAATGAACTTCGTATGGTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
245 CTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
22355 ACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGTAGGATGTGTAAGCCGGGGATCGGCCG
310 ACGAAACGAGAGTGCGGGCGCTCAGCCGGCCAAAGGGGCAGGATGCGTAAGCCGAGGATCGACCA
* * * * *
22420 GGTCCCCC-CTGCGTGCTGCCAATCCTGCTATCGTAACCCTCGATCTGATCCAATCTTAGATTGG
375 GGTCCCCCACTGCGTGCTACCAATCCTGCTATCGTAAACCTCGATCCGATACAATCTTAGACTGG
* * * * * *
22484 GAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGACAGGCGGGCACTACGCCGGTCG
440 GAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCAGACAGGCGAGCACTACACCGGCCA
* * * *
22549 GAGAGGCGGGATGCGCAAGCTGTGGATCGATACAGTGGTAGGTGGGTTTAGGCACATTTTCATAT
505 GAGAGGCGAGATGCGCAAGCCGTGGATCGAAACAGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
22614 TTTTGCCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
570 TTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA-CCTTCATG
* ** * *
22679 TGAAGTTTCATGGCAAGATGAATTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTG
634 TGAAGTTTCATGGCAAGACGAACCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCG
* * * *
22744 GGATTTTTTTAAAATTTTTTCAGAGGGATTTTTGGCCCCAAACTTGATAGACGAGATCTTTGTAT
699 AGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC-AA-TTGATAGACGAGATCCTTGTAT
* * *
22809 TTTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTT
762 TTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
*
22873 GAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGT
827 GAAAAAAGTGTCCCCATTCCAAACACTTTAATGGCTACTGGCAGCAAACC--T
*
22926 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAC
1 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
22991 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-G-CACCCACCCCTTACCCCCCAATCGT
66 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCGACACCCACCCCTTACCCCCCAAT-G-
* * *
23054 CGAAACCCTAATACCGCCGGTCAGGTTCTCCGACGATGCTCCAGTGATGGTGCCCCGGGTGAAAA
129 -G----------ACCGCCTGTCAGGTTCTCCGACGATGCTCCA-CGATGGTG-CCCGGGCG-AAA
* * *
23119 AAAAATGTGGCACCAGCACATGCCTGAGCCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCG
180 AAAAATGTGGCACCAGCACATGCCCGAG-CCCAGCATGTGCTCCCAC-ACCCTCGGTCTGGTCCG
* *
23184 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCTGTATGC
243 ATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGC
23238 TTAGACTGGG
Statistics
Matches: 1028, Mismatches: 111, Indels: 108
0.82 0.09 0.09
Matches are distributed among these distances:
877 8 0.01
878 288 0.28
879 236 0.23
880 99 0.10
881 36 0.04
882 90 0.09
883 6 0.01
884 3 0.00
885 1 0.00
887 2 0.00
888 8 0.01
889 1 0.00
890 3 0.00
891 2 0.00
892 2 0.00
893 129 0.13
894 32 0.03
895 33 0.03
896 49 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (877 bp):
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCGACACCCACCCCTTACCCCCCAATGGA
CCGCCTGTCAGGTTCTCCGACGATGCTCCACGATGGTGCCCGGGCGAAAAAAAATGTGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTCCCACACCCTCGGTCTGGTCCGATCTTACACTGGGAATGA
ACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCG
GGCGCTCAGCCGGCCAAAGGGGCAGGATGCGTAAGCCGAGGATCGACCAGGTCCCCCACTGCGTG
CTACCAATCCTGCTATCGTAAACCTCGATCCGATACAATCTTAGACTGGGAATGAACTCCATATG
CCTAAGCCAACCGACAAAACGAGCAGACAGGCGAGCACTACACCGGCCAGAGAGGCGAGATGCGC
AAGCCGTGGATCGAAACAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATG
CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCTTCATGTGAAGTTTCATGGCAAG
ACGAACCGTTTTCTATTTTTCACGATTTTTGAAAATTTTTACGGTTCGAGATTTTTTTAAAATTT
TTTCAGAAGGAGTTTTGGCCCCAATTGATAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTC
CAAACACTTTAATGGCTACTGGCAGCAAACCT
Found at i:23228 original size:25 final size:26
Alignment explanation
Indices: 23186--23263 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
23176 CTGGTCCGAT
* *
23186 CTTACACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
23212 CTTAGACT-GGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
23237 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
23263 C
1 C
23264 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
25 24 0.49
26 25 0.51
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:30015 original size:26 final size:26
Alignment explanation
Indices: 29986--30038 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
29976 CCGGTCCGAT
29986 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
30012 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
30038 C
1 C
30039 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:30913 original size:26 final size:26
Alignment explanation
Indices: 30884--30936 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
30874 CCGGTCCGAT
30884 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
30910 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
30936 C
1 C
30937 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:31171 original size:898 final size:898
Alignment explanation
Indices: 29275--35675 Score: 10826
Period size: 887 Copynumber: 7.2 Consensus size: 898
29265 GATCTGGTCT
* * * ** * * *
29275 GATCTTAAATTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGGGTGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGAGGGC
* * *
29340 ACTACGCCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGG
66 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGG
* * * *
29405 CACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATGGTCCC
131 CACAGCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCC
* * *
29470 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCATGTCAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTTGAAAC
** * * *
29535 TTTTTACGGTTCGGGATTTTTTTAAAAATTTTTCAGAAGGACTTTTGGCCCCAAACTTGGTAAAC
261 TTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGAC
* * * * * *
29600 ATGATCCTTGTAATTTTGTTGGCATGCATAAAACAATTTAGCTAAAAACTCGAAGTGTACAGGAT
326 ATGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGAT
* *
29665 TTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTA
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
29730 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
29795 TATAAGGGCCAAGTACCAACACCAATCGCACATCATGTGCGTGCA---CCCC-C-CCCCAATCGT
521 TATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCGCACCCCCCCGCTCCCCAATCGT
* *
29855 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCTGCGATGGTGCCCCGGGCGAAAA
586 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGCGAAAA
29920 AAAAATGTGGCACCAGCACATGCCTGATCCCAGCATGTGCACCCACAACCCTTGGTCCGGTCCGA
651 AAAAATGTGGCACCAGCACATGCCTGATCCCAGCATGTGCACCCACAACCCTTGGTCCGGTCCGA
29985 TCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACC
716 TCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACC
* *
30050 CATGAAACGAGTGTACGGGCGCCCAGCCGACCAGGGGGGCAGCATGGGCAACTAGGGGATCAGTC
781 CACGAAACGAGTGTACGGGCGCCCAGCCGACCAGAGGGGCAGCATGGGCAACTAGGGGATCAGTC
* * * *
30115 GAGTCCCCCCCTATGTGTTACTGATCCTGCTATCGCAACCCTCAGTCCGGTTT
846 GAGTCCCCCCCTGTGTGCTACTGATCCTGCTACCGCAACCCTCAGTCCGGTTC
**
30168 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAACAAGCGGGCGGGAGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGAGGGC
* *
30233 ACTACGCCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTCGGCGGGTTTAGG
66 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGG
30298 CACAGCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCC
131 CACAGCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCC
*
30363 TTAAGCCTTCATGTCAAGTTTCATGGCAAGACGATTCGTTTTTTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCATGTCAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTTGAAAC
* *
30428 TTTTTACGGTTCAAAATTTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAGAC
261 TTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGAC
*
30493 ATGATCCTTGTATTTTTGTTGGTATTCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGAT
326 ATGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGAT
*
30558 TTTGTGACCATTTGAAAAAAGTGTCCCCATCTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
30623 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAAGGGCCCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
30688 TATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCTCGCACCCCCCCACTCCCCAATCGC
521 TATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCGCACCCCCCCGCTCCCCAATCGT
* *
30753 CAGAAACCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGCGAAAA
586 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGCGAAAA
30818 AAAAATGTGGCACCAGCACATGCCTGATCCCAGCATGTGCACCCACAACCCTTGGTCCGGTCCGA
651 AAAAATGTGGCACCAGCACATGCCTGATCCCAGCATGTGCACCCACAACCCTTGGTCCGGTCCGA
30883 TCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACC
716 TCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACC
* *
30948 CACGAAACGAGTGTACGGGTGCCCAGCCGACTAGAGGGGCAGCATGGGCAACTAGGGGATCAGTC
781 CACGAAACGAGTGTACGGGCGCCCAGCCGACCAGAGGGGCAGCATGGGCAACTAGGGGATCAGTC
* *
31013 GAGTCCCCCCCTGTGTGCTACTGATCCTGCTACCACAACCCTCAGTCCGGTTT
846 GAGTCCCCCCCTGTGTGCTACTGATCCTGCTACCGCAACCCTCAGTCCGGTTC
*
31066 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGAGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGAGGGC
* *
31131 ACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTCAGTGGGTTTAGG
66 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGG
*
31196 CACAGCTTCATATTTCTGCCATGCCAATGCCAGTTTTATGGCTTGTAAATTCATACAGTGGTCCC
131 CACAGCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCC
*
31261 CTAAGCCTTCATGTCAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCATGTCAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTTGAAAC
*
31326 TTTTTATGGTT-AAGGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGA
261 TTTTTACGGTTCAA-GATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGA
* *
31390 CATGATCCTTGTATTTTTTTTGGTATGCA-AAACAAAATTCAGCTAAAAACTCGAAGTGTATACG
325 CATGATCCTTGTATTTTTGTTGGTATGCACAAA-AAAATTCAGCTAAAAACTCGAAGTGTATAGG
*
31454 ATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
389 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
31519 TGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCC
454 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
31584 AATATAAGGGCCAAGTACCAACACCAATCGCACATCATGTGCGTGCACCCCCCCCGGC-CCCCAA
519 AATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCGCA-CCCCCCC-GCTCCCCAA
** *
31648 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAACGATGCTCCTGCGATGGTGCCCCGGGCG
582 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGCG
31713 AAAAAAAAATGTGGCACCAGCACATGCCTGATCCCAGCATGTGCACCCACAACCCTTGGTCCGGT
647 AAAAAAAAATGTGGCACCAGCACATGCCTGATCCCAGCATGTGCACCCACAACCCTTGGTCCGGT
31778 CCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTC
712 CCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTC
*
31843 AACCCACGAAACGAGTGTACGGGCGCCCAGCCGACCAGGGGGGCAGCATGGGCAACTAGGGGATC
777 AACCCACGAAACGAGTGTACGGGCGCCCAGCCGACCAGAGGGGCAGCATGGGCAACTAGGGGATC
* *
31908 AGTCGAGTCCCCCCCTGTGTGTTACTGATCCTGCTATCGCAACCCTCAGTCCGGTTC
842 AGTCGAGTCCCCCCCTGTGTGCTACTGATCCTGCTACCGCAACCCTCAGTCCGGTTC
**
31965 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAACAAGCGGGCGGGAGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGAGGGC
* * *
32030 ACTACGTCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTCGGCGGGTTTAGG
66 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGG
32095 CACAGCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCC
131 CACAGCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCC
32160 TTAAGCCTTCATGTCAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCATGTCAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTTGAAAC
* *
32225 TTTTTACGGTTCAAAATTTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAGAC
261 TTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGAC
*
32290 ATGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGAT
326 ATGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGAT
32355 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
32420 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
32485 TATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCGCACCCCCCCCGCTCCCCAATCG
521 TATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCGCA-CCCCCCCGCTCCCCAATCG
* * *
32550 CCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGC-A----------ATGGTGCCCCGGGCG-AA
585 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGCGAAA
*
32603 AAAAAATGTGGCACCAGCACATGCCTGATCCCAGCATGTGCACCCACAACCCGTGGTCCGGTCCG
650 AAAAAATGTGGCACCAGCACATGCCTGATCCCAGCATGTGCACCCACAACCCTTGGTCCGGTCCG
* *
32668 ATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTGAAC
715 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAAC
*
32733 CCACGAAACGAGTGTACGGGCGCCTAGCCGACCAGAGGGGCAGCATGGGCAACTAGGGGATCAGT
780 CCACGAAACGAGTGTACGGGCGCCCAGCCGACCAGAGGGGCAGCATGGGCAACTAGGGGATCAGT
*
32798 CGAGTCCCCCCCTGTGTGCTACTGATCCTGCTA-CGTCAACCCTCAGCCCGGTTC
845 CGAGTCCCCCCCTGTGTGCTACTGATCCTGCTACCG-CAACCCTCAGTCCGGTTC
*
32852 GATCTTAGACTGGGAATGAACTCCGTATGCCGAAGCCAACCGACGAAACAAGCGGGCGGGAGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGAGGGC
32917 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGG
66 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGG
32982 CACAGCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCC
131 CACAGCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCC
*
33047 CTAAGCCTTCATGTCAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCATGTCAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTTGAAAC
*
33112 TTTTTACGGTTCAAAATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGAC
261 TTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGAC
*
33177 ATGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGAT
326 ATGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGAT
33242 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
**
33307 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGATGGCCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
33372 TATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCGCACCCCCCCCGCTCCCCAATCA
521 TATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCGCA-CCCCCCCGCTCCCCAATCG
* *
33437 CCGGAACCCCAATGCCGCCGATCAGG---T-------T-CTCCGGCGATGGTGCCCCGGGCGAAA
585 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGCGAAA
33491 AAAAAATGTGGCACCAGCACATGCCTGATCCCAGCATGTGCACCCACAACCCTTGGTCCGGTCCG
650 AAAAAATGTGGCACCAGCACATGCCTGATCCCAGCATGTGCACCCACAACCCTTGGTCCGGTCCG
*
33556 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCACC
715 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAAC
* *
33621 CCACGGAACGAGTGTACGGGCGCCCAACCGACCAGAGGGGCAGCATGGGCAACTAGGGGATCAGT
780 CCACGAAACGAGTGTACGGGCGCCCAGCCGACCAGAGGGGCAGCATGGGCAACTAGGGGATCAGT
* * *
33686 CGAGT-CCCCCCTGTCTGCTACTGATCCTGCTACCTCAACCCTCAGCCCGGTTC
845 CGAGTCCCCCCCTGTGTGCTACTGATCCTGCTACCGCAACCCTCAGTCCGGTTC
33739 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGAGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGAGGGC
33804 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGG
66 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGG
* *
33869 CACAGCTTCATATTTCTGCCATGCCAATGCCAGTTTTATGGCTTGTAAATTCATATAGTGGTCCC
131 CACAGCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCC
*
33934 TTAAGCCTTCATGTCAAGTTTTATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCATGTCAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTTGAAAC
33999 TTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCC-AACTTGGTAGAC
261 TTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGAC
* *
34063 ATGATCCTTGTATTTTTGTTGGTATGCACAACACAATTCAGCTAAAAACTCGAAGTGTATAGGAT
326 ATGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGAT
34128 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
34193 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
34258 TATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCGCACCCCCCCGCTCCCCAATCGT
521 TATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCGCACCCCCCCGCTCCCCAATCGT
* *
34323 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGCTGCCCCGGGCGAAAA
586 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGCGAAAA
* *
34388 AAAAATGTGGCACCAGCACATGCCTGATCCCAGCATGTCCACCCACAACCCTTGGTCCGGTCTGA
651 AAAAATGTGGCACCAGCACATGCCTGATCCCAGCATGTGCACCCACAACCCTTGGTCCGGTCCGA
*
34453 TCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACC
716 TCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACC
*
34518 CACGAAACGAGTGTACAGGCGCCCAGCCGACCAGAGGGGCAGCATGGGCAACTAGGGGATCA-TC
781 CACGAAACGAGTGTACGGGCGCCCAGCCGACCAGAGGGGCAGCATGGGCAACTAGGGGATCAGTC
* *
34582 GAGTCCCCCCCTGTGTGCTACTGATCCTGCTACCACAACCCTCAGTCTGGTTC
846 GAGTCCCCCCCTGTGTGCTACTGATCCTGCTACCGCAACCCTCAGTCCGGTTC
34635 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGAGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGAGGGC
*
34700 ACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGG
66 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGG
34765 CACAGCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCC
131 CACAGCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCC
* * *
34830 TTAAGCCTTCCTGTCGAGTTTCATGGCAAGACGATTCATTTTCTATTTTTCACGATTTTTGAAAC
196 TTAAGCCTTCATGTCAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTTGAAAC
* *
34895 CTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGAC
261 TTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGAC
34960 ATGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGAT
326 ATGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGAT
*
35025 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTG
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
35090 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * * * *
35155 TATAAGGGCCACGTACCAGCACCCATCGCACATCATGTGCCCACACCCCCCTGCCCCCCAATCGT
521 TATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCGCACCCCCCCGCTCCCCAATCGT
* * ** * ** * *
35220 CGAAACCCCAATGTCGTTGGTTAGGTTCTCCGATGATGCTCCGGCGATGGTGCCTCAGGCG-AAA
586 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGCGAAAA
** * * * * * * *
35284 AAAAATGCAGCACAAGCACATGCCCGAACCCAACATGTGCACCCGCAACCCTTGGTCTGGACCGA
651 AAAAATGTGGCACCAGCACATGCCTGATCCCAGCATGTGCACCCACAACCCTTGGTCCGGTCCGA
* * *
35349 TCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
716 TCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACC
* * * * * * * * * *
35414 CATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGC-CGAGGATCAGT
781 CACGAAACGAGTGTACGGGCGCCCAGCCGACCAGAGGGGCAGCATGGGCAA-CTAGGGGATCAGT
* * * * * *
35478 CGGGT-CCCCCCTCTGTGCTACTGATCCTGCTACTGCAACCCTCGGTTCGGTCC
845 CGAGTCCCCCCCTGTGTGCTACTGATCCTGCTACCGCAACCCTCAGTCCGGTTC
* * **
35531 AATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCAAGAGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGAGGGC
* * *
35596 ACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGG
66 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGG
35661 CACAGCTTCATATTT
131 CACAGCTTCATATTT
35676 TTAGCTGAAT
Statistics
Matches: 5224, Mismatches: 245, Indels: 75
0.94 0.04 0.01
Matches are distributed among these distances:
884 1 0.00
885 41 0.01
886 249 0.05
887 1205 0.23
888 212 0.04
893 519 0.10
895 7 0.00
896 909 0.17
897 327 0.06
898 845 0.16
899 903 0.17
900 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGAGGGC
ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGG
CACAGCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCC
TTAAGCCTTCATGTCAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGAC
ATGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCGCACCCCCCCGCTCCCCAATCGT
CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGGCGAAAA
AAAAATGTGGCACCAGCACATGCCTGATCCCAGCATGTGCACCCACAACCCTTGGTCCGGTCCGA
TCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCAACC
CACGAAACGAGTGTACGGGCGCCCAGCCGACCAGAGGGGCAGCATGGGCAACTAGGGGATCAGTC
GAGTCCCCCCCTGTGTGCTACTGATCCTGCTACCGCAACCCTCAGTCCGGTTC
Found at i:31812 original size:26 final size:26
Alignment explanation
Indices: 31783--31835 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
31773 CCGGTCCGAT
31783 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
31809 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
31835 C
1 C
31836 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:32706 original size:26 final size:26
Alignment explanation
Indices: 32670--32722 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32660 CCGGTCCGAT
32670 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
32696 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
32722 C
1 C
32723 CTGAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:33587 original size:26 final size:26
Alignment explanation
Indices: 33558--33610 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
33548 CCGGTCCGAT
33558 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
33584 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
33610 C
1 C
33611 CTGAGTCACC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:34483 original size:26 final size:26
Alignment explanation
Indices: 34454--34506 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
34444 CCGGTCTGAT
*
34454 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
34480 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
34506 C
1 C
34507 CTGAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:38519 original size:26 final size:26
Alignment explanation
Indices: 38467--38519 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
38457 CTTGAGTTAG
* *
38467 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
38493 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
38519 G
1 G
38520 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:40257 original size:26 final size:26
Alignment explanation
Indices: 40227--40279 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
40217 GTTGACTTAG
*
40227 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCACTGTAA
40253 GCATACGGAGTTCATTCCCACTGTAA
1 GCATACGGAGTTCATTCCCACTGTAA
40279 G
1 G
40280 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTGTAA
Found at i:41151 original size:26 final size:26
Alignment explanation
Indices: 41121--41173 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
41111 GTTGACTTAG
41121 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
41147 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
41173 G
1 G
41174 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:42474 original size:904 final size:895
Alignment explanation
Indices: 39410--43135 Score: 4924
Period size: 894 Copynumber: 4.1 Consensus size: 895
39400 TTATGGGCGT
* * * *
39410 ACATTCTGGGCTCGGGCATGTGCTGGTGC--CATATTTTTTTCACCCGGGGCA-CAACGCC-GAA
1 ACATGCTGGGCTCGAGCATGTGCTGGTGCTACAT-TTTTTTTCGCCCGGGGCACCATCGCCAG-A
* * * * **
39471 GCATCGCCAGG-GAACCAGGCCGGCGACATTGTGGGTTCCGGTGATTGGGTGGGCGGGGGGGTGT
64 GCATCACC-GGAGAACCTGACCGGCGGCATTG-GGGTTCCGACGATTGGG-GGG-GGGGGGGTGT
* * *
39535 GTGCACATGATGTGCGATGGGTGCTGGTAATTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAA
125 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*** *
39600 CCTTGGGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCAATT
190 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATT
* *
39665 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTA
255 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* *
39730 GCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
320 GCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* *
39795 ATCCTTCTGAAAAAATTTTAAAAAAAATCCCGAACCGTAAAAAGTTT-TAAAAATTGTGAAAAAT
385 CTCCTTCTGAAAAAATTTT-AAAAAAATCCCGAACCGTAAAAAGTTTCT-AAAATCGTGAAAAAT
*
39859 AGAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
448 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
39924 AAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAGGATGTGCCTAAACTCACCTACCACCCT
513 AAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* ** *
39989 ATCGATCCACGGCTTGCGCATCCCTCCTCTCTGGCCGACGTAGTGCCCGCCCGATCGATCGTTTC
578 ATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTC
* * * * **
40054 GTCGGTTGGCTTAAGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCAGATAGAGGGTTGTGG
643 GTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGG
** * ** * *
40119 CAGCAGGATTGGCAGCACACAGAGGAAGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCA
708 CAGCAGGATCAGCAGCACACAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTACCCCTCT
40184 AGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
773 AGCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * ** *
40249 GTAAGCATACGGAGTTCATTCCCACTGTAAGATCAGACCGGACCG-AGGCTTAC-GAGTGC
838 CTAAGCATACGAAGTTCATTCCGGC-ATAAGATCAGACCGGACCGAAGG-TTACAG-GTGC
* * * * *
40308 ACATGCTAGGCTCGGGCATTTGCTGGTGCTGCA-TTTTTTTCGCCCGGGGCACCATCGCCGGAGC
1 ACATGCTGGGCTCGAGCATGTGCTGGTGCTACATTTTTTTTCGCCCGGGGCACCATCGCCAGAGC
* * * * *
40372 ATCACCGGAGAACCTAATCGACGGCATTGGGGGTTCCGACGATT-GGGGGTGGGGGGTGTGTGCA
66 ATCACCGGAGAACCTGACCGGCGGCATT-GGGGTTCCGACGATTGGGGGGGGGGGGGTGTGCGCA
* *
40436 CATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATA-CACCTCATCAAACCTC
130 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CCTCATCAAACCTC
* *
40500 AAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCCAGTAGCAATTAAAG
194 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAG
* * * * * *
40565 TATATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCATGTACGCTTTGAGTTTTTAGCTG
259 TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * * *
40630 AATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTA--AAATGTTGGGGCCAAAACTC
324 AATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT-TTGGGGCCAAAACTC
* *
40693 CTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
388 CTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAGAAA
*
40758 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGACTTTACAAGCC
453 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
40823 ATAAAAATGGCATTGGCATGGAAAAAATATGAAGATGTACCTAAACCCACCTACCACCTTATCGA
518 ATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
40888 TCCACGGCTTGCGCATCCTGCCTCTCTAGTCGGCGTAGTGTCCGCCCGCCCGCTCGTTTCGTCGG
583 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * *
40953 TTGGCTTAGGCATGCGAAGTTCATTCCCAGTATAAGA-TCGAACCAGACCGAGGGTTGTGGCAAC
648 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAG-ACCAGACCGAGGGTTGTGGCAGC
* * * ** *
41017 AAGATCGGTAGCACACAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
712 AGGATCAGCAGCACACAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTACCCCTCTAGCC
* * *
41082 AGCTGAGCGCCCACACGCTGGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
777 AGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
41147 GCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCAGGTGC
842 GCATACGAAGTTCATT-CCGGCATAAGATCAGACCGGACCGAAGGTTACAGGTGC
* * * * * * * *
41202 ATATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCACCTGGGGTAACATCACC-GAAG
1 ACATGCTGGGCTCGAGCATGTGCTGGTGCTACATTTTTTTTCGCCCGGGGCACCATCGCCAG-AG
* * * * * *
41266 CATCATCGGAGAACCTAACCAGCGGCATTGGGGGTTCTGACGATTGGGGGGTGGAGGGTGTGCGC
65 CATCACCGGAGAACCTGACCGGCGGCATT-GGGGTTCCGACGATTGGGGGGGGGGGGGTGTGCGC
* *
41331 ACATGATGTGCAATGGGTGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTC
129 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* *
41396 AAGAACTCACACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
194 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAG
41461 TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
259 TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
* * *
41526 AATTGTTTTGTGCATGCTAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC
324 AATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
* * *
41591 TTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCTAAAATTGTGAAAAATAGAAGA
389 TTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAGAAAA
* * * * *
41656 CGAGTCATCCTGCCATGAAACTTCTCATGAAGGCTTAAGGGACCATTGTATGAATTTCCATGCCA
454 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
41721 TAAAAATGGCATTGGTAGGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
519 TAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
*
41786 CCAAGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGT
584 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCTCGTTTCGT
* * * * * * *
41851 CGGTTGGCTTAGGCTTACGGAGTTCATTCCCTGTCTAAGATTAGATCGGACTGAGAGTTGTGGCA
645 CGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCA
* * ** * * * ** * *
41916 GCAGGATTAGTAGCACGTAGAA-GGGGACCCGATTGATCCTCAGCTTGCATAACCTACCCCTCTG
710 GCAGGATCAGCAGCACACA-AAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTACCCCTCTA
* * * * *
41980 GCCGGCTGACCGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
774 GCCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* ***
42045 TAAGCATACGAAGTTCATTCCTGGCATAAGATCAGATCGGACCGAAGGTTGTGGGTGC
839 TAAGCATACGAAGTTCATTCC-GGCATAAGATCAGACCGGACCGAAGGTTACAGGTGC
* * * **
42103 ACATGTTGGGCTCGAGCATGTGGC-GATGCTACATTTTTTTTTTGCCCAAGGCACCATCGCCAGA
1 ACATGCTGGGCTCGAGCATGT-GCTGGTGCTACA-TTTTTTTTCGCCCGGGGCACCATCGCCAGA
* * *
42167 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGTGTTCTGCCGATTGGGGGGGCGGGGGGGTGTG
64 GCATCACCGGAGAACCTGACCGGCGGCATTGGG-GTTCCGACGATT-GGGGGG-GGGGGGGTGTG
* *
42232 CGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAAC
126 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
** *
42297 CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
191 CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTA
* * * * * *
42362 AAGTGTTTAAAATAGGGACACTTTTTCCAAATGGTCACACAATCCTGTACACTTCGAGTTTTTTG
256 AAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * *
42427 TTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAAC
321 CTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * *
42492 TCCTTCTGAAAAAATTTTAAAAAAATCCCAAATCGTAAAAAGTTTTTAAAATCGTGAAAAATAGA
386 TCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAGA
* * *
42557 AAACGAGTCGTGTTGCCATGAAACTTCACATGAAGGCCTAAGGGACCATTGTATGAATTTAGAAG
451 AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
42622 CCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGTCTAACCCCACCTACCACCCTATC
516 CCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * * * * *
42687 GATCCACGGCTTGCGCATCCCGCTTCTCTGGCTGGCATGGTGCCTGCCCGTCCGGTCGTTTCGTC
581 GATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTC
* *
42752 GGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGAGACAG
646 GGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAG
* * * *
42817 CAGGATCAGCAGGACGCAAAGGGGGA-CCAAGTCGATCCTCGGCTTGCGCATCCTACCCCTCTAG
711 CAGGATCAGCAGCACACAAAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCTACCCCTCTAG
** ** * *
42881 CCTA-CTGAATGCTTGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTTATTCCCAGTC
775 CC-AGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * ** *
42945 TAAGCATACAAAGTTCA-TCC-CCAGTGAAAGATCAGATTGGACCGAGGGTTACAGGTGC
839 TAAGCATACGAAGTTCATTCCGGCA-T--AAGATCAGACCGGACCGAAGGTTACAGGTGC
* * ** *
43003 ACATGCTGGGCTCGACCATATGCTGGTG-T-CGTATTTCCTTTCGCCCGGGGCACCATCGCCAAA
1 ACATGCTGGGCTCGAGCATGTGCTGGTGCTAC--ATTTTTTTTCGCCCGGGGCACCATCGCCAGA
* * *
43066 GCATCATCGGAGAACCTGACCGGCGGCATTGAGGGTTCCGACAATTGGGGGGGAGGGGGTGTGCG
64 GCATCACCGGAGAACCTGACCGGCGGCATTG-GGGTTCCGACGATTGGGGGGGGGGGGGTGTGCG
43131 CACAT
128 CACAT
43136 CACCTGTAAC
Statistics
Matches: 2487, Mismatches: 299, Indels: 85
0.87 0.10 0.03
Matches are distributed among these distances:
893 2 0.00
894 466 0.19
895 99 0.04
896 464 0.19
897 250 0.10
898 58 0.02
899 112 0.05
900 250 0.10
901 253 0.10
902 63 0.03
903 7 0.00
904 463 0.19
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (895 bp):
ACATGCTGGGCTCGAGCATGTGCTGGTGCTACATTTTTTTTCGCCCGGGGCACCATCGCCAGAGC
ATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGGGGGGGTGTGCGCAC
ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTG
TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
CTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCTAAAATCGTGAAAAATAGAAAACG
AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAGGA
TCAGCAGCACACAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTACCCCTCTAGCCAGCT
GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
ACGAAGTTCATTCCGGCATAAGATCAGACCGGACCGAAGGTTACAGGTGC
Found at i:43192 original size:26 final size:26
Alignment explanation
Indices: 43163--43215 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
43153 CCGATCCGAT
*
43163 CTTACATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
43189 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
43215 C
1 C
43216 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:44052 original size:26 final size:26
Alignment explanation
Indices: 44023--44075 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
44013 CTGATCCGAT
* **
44023 CTTACATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAACAAACTCCGTATG
*
44049 CTTAGACTGGGAACAAACTCCGTATG
1 CTTACACTGGGAACAAACTCCGTATG
44075 C
1 C
44076 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAACAAACTCCGTATG
Found at i:44453 original size:12 final size:11
Alignment explanation
Indices: 44428--44452 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
44418 TTACGGTTCC
44428 AAATTTTTTTA
1 AAATTTTTTTA
44439 AAATTTTTTTA
1 AAATTTTTTTA
44450 AAA
1 AAA
44453 AGATTTTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
AAATTTTTTTA
Found at i:46677 original size:26 final size:26
Alignment explanation
Indices: 46648--46700 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
46638 CTGGTCCGAT
46648 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
46674 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
46700 C
1 C
46701 CTCAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:48014 original size:902 final size:896
Alignment explanation
Indices: 44255--48383 Score: 5371
Period size: 882 Copynumber: 4.6 Consensus size: 896
44245 ACGTTAGTCA
* * * * *
44255 TGGATCGGTAGGGTGGTAGGTGTGTTTAGGCATATCTTCATATTTCTGCCATGCCGATACCATTT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
* * * *
44320 TTATGGCTTGTAAATTCATACAGTGGACCCTTAAGCCTTCATGTGAAGTTTCAGGGCAAGACAAC
66 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
*
44385 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCCAA-ATTTTTTTAAAATTTTTTT
131 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT-CAAGATTTTTTTAAAATTTTTTC
* * * *
44449 AAAAAGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
195 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* *
44514 AATTCAGCTAAAAAATGGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
260 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
44579 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCCAATGCTCTTTAAGGGGATGTGAGT
325 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
** * * * *
44644 TCTC-ATGGTTTGATGAGAAATAGGAGGCCAATATAAGAGCCTAGTACCAGCACCCATCGCAGAT
390 TCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * **
44708 TATGTACGAACACCCCCCGGCCCCCCAATCGCCGTAA-CCCAATGTTGCCGGTCAGGTTCTCCGA
454 CATGTGCGCACACCCCCC-GCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * * * * * *
44772 CGCTTCTTTGGTGATGGTGCCTC-GGGCAAAAAAAAAATGGCACCAGCACATGCTCGAGCCCAGC
518 CGATGCTCTGGCGATGGTGCC-CAGGGCGAAAAAAATATAGCACCAGCACATGCCCGAGCCCAGC
* * ** * * *
44836 ATGTGCACCCGCAAACCTCGGTCCAGTCCGATCCTACACTGGGAATAAACTTCGTATGCTTAGAC
582 ATGTGCACCCGTAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
44901 TGGGAATTAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAGCCGGCCAT
647 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * *** *
44966 AGGGGCAGGATGCACAAGCCGGGGATCGA-TCGGGTCCCCCCGTACGGGCTGCCGATCCTACTAT
712 AGGGGCAGGATGCACAAGCCGGGGATCGACTCGGGTCCCCCCTTACGTGCTATTGATCCTACTAC
* * * * ** *
45030 CACAACTCTCGATACGGTCTGATCTTAGATTGGAAATGAACTCCGTATGCCTATGCCAACAGACG
777 CACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACG
* * *
45095 AAACGAGCGGACGGGCCGGCACTACGTCGGCCAAAGAGGTGGGATGCGCAAGCCG
842 AAACGAGCGGACGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCGCAAGCCG
* *
45150 TGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTT-TCGCCATGCCAATGCTATT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCCATGCCAATGCCATT
*
45214 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGATTCATGGCAAGACGA
65 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * *
45279 CTCGTTTTCTTTTTTTCATGATTTTTAAAACTTTTTATGGTTCGAGATTTTTTTAAAATTTTTTC
130 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTC
* *
45344 AGAAGGAGTTTTGG-------CTTGGTAGACGTGATCCTTGTATTTTTTTTGCCATGCATAAAAA
195 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* * * *
45402 AATTCAGCTAAAAACTCTAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTATCCCCATTTCA
260 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
45467 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGT
325 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
45532 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAGCGCACATC
390 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * **
45597 ATGTGTGCACA-------CCCCCCAATTACCGGAACCCCAATGCAGCTGGTCAGGTTCTCCGGTG
455 ATGTGCGCACACCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
* * * * * * * * * * *
45655 ATGGTCCGGTGATGGTGCCCAAGGTGAAAAAAAATGTGGCACCAGCACATTCCTGCGCCTAGCAT
520 ATGCTCTGGCGATGGTGCCCAGGGCG-AAAAAAATATAGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
45720 GTGCACCCGTAACCCTCGGTCTGGTCCGATCTTACATTGGGAATGAACTCTGTATGTTTAGACTA
584 GTGCACCCGTAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * * *
45785 CGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCATGTGGGCGCTCAACCGGCCAGAG
649 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
** * * * * * *
45850 GGGCAGGATGGGCAAGCCGGCGATCGGC-CGTGTACCCCCTTACGTGCTGCTT-ATCCTGCTACC
714 GGGCAGGATGCACAAGCCGGGGATCGACTCGGGTCCCCCCTTACGTGCT-ATTGATCCTACTACC
* * *
45913 ACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACTGACGA
778 ACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGA
* * * * * * * * *
45978 AACAAGCGGGCGGGTGGGCTCTATGCCGGCTAGAGAGACGGGATGCGCAAGCTG
843 AACGAGCGGACGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCGCAAGCCG
* * *
46032 TGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCTTGCCAATGCCATTT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
46097 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
66 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * * **
46162 TCGTTTTCTATTATTCACGATTTTTGAAACTTTTTACAGTT-TGGTATTTTTTTAAAATTTTTTC
131 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAG-ATTTTTTTAAAATTTTTTC
* *
46226 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGGGATCCTTGTATTTTTTTTGGCATGCAAAAAAA
195 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* * * *
46291 AATTTATCTAAAAACTCGATGTGTACAGGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCA
260 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * *
46356 GACACTTTAGTGGCTATTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAAT
325 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
46421 TCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
390 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
46486 ATGTGGGCACACTCCCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGTCGGTTAGGTTCTCCG
455 ATGTGCGCACA---CCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * * * *
46551 ACGAAGCTCCGACGATGGT-CCCCGAGCGAAAAAAA-ATACGGCACCAGCACATTCTCGAGCCCA
517 ACGATGCTCTGGCGATGGTGCCCAGGGCGAAAAAAATATA--GCACCAGCACATGCCCGAGCCCA
* * *
46614 ACATGTGCACCCGTAATCCTCGATCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAG
580 GCATGTGCACCCGTAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAG
* * * * * *
46679 ACTGGGAATGAACTCCGTATGCCTCAGTCAACCCACCAAACGAGTGTACGGGCACTCAGTCGGCC
645 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * *
46744 AGAGGGGTAGCATGCACAAGCCGGGGATCG-GTCGGGTCCCCTCC-TGCATGCTATTGATCCTGC
710 AGAGGGGCAGGATGCACAAGCCGGGGATCGACTCGGGTCCCC-CCTTACGTGCTATTGATCCTAC
* * * * * *
46807 TGCTGA-AACCCTTCG-TTCGGTATGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAAC
774 TAC-CACAACCC-TCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAAC
** * * * *
46870 CGATTAAACGAGC-GAGCGGGCGGGCATTATGCCGACCAGAGAGGCGGGATGCGCAAGCCG
837 CGACGAAACGAGCGGA-CGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCGCAAGCCG
* * *
46930 TGGATCGACAGGGTGGAAGGT-GGTTTAGGCACATCTTCATATTTATGCCATGCCAATGCCATTT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
* *
46994 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTAAAGTTTCATGGCAAGATGAC
66 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * * **
47059 TCGTTTTCTTTTTTTCACGATTTTTAAAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTCA
131 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCA
* * *
47124 GAAGGATTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
196 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* * * * *
47189 ATTCACCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTCAAAAAAGTGGCCACCATTTAA
261 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC-CCATTTCA
* * *
47254 AACACTTTACTGGGCTACTAGCCAGCAACCACCTGTAAAAATCTCAAATGCTCTTTAAGGGGGTG
325 GACACTTTAAT-GGCTACT-GGCAGCAA--ACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTG
* *
47319 TGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAAATATAATGGCCAACGTACCAGCA-CCATC
385 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC-AATATAAGGGCCAA-GTACCAGCACCCAT-
* * * *
47383 CGCACATCATGTGCGCACACACCCCGCCCCCCAATCACCTGAACCCCAATGTCGCCTGTCAGGTT
447 CGCACATCATGTGCGCACACCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
47448 CTCCGACGATGCTCTGACGATGGTGCCCAGGGTGAAAAAAATGTAGCACCAGTACATGCCCGAGC
512 CTCCGACGATGCTCTGGCGATGGTGCCCAGGGCGAAAAAAATATAGCACCAGCACATGCCCGAGC
* * *
47513 CCAGCATGTGCACCCGTAACCCTCGGTCTGGTCTGATCTTACTA-TGGGAATGAACTCCGCATGT
577 CCAGCATGTGCACCCGTAACCCTCGGTCTGGTCCGATCTTAC-ACTGGGAATGAACTCCGTATGC
* * * * *
47577 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAATCCACGAAATGAGCGTGCGAGCGCTTAGCC
641 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
47642 GACCGGAGGGTCAGGATGCACAAGCAGGGGATCGACT-GGGTCCCCCCTTACGTGCT-TTCGATC
706 GGCCAGAGGGGCAGGATGCACAAGCCGGGGATCGACTCGGGTCCCCCCTTACGTGCTATT-GATC
* ** *
47705 CTACTACCACAACCCTCGATCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAACCA
770 CTACTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCA
* * * * *
47770 ACCGACGAAACGAGCGGACGGGCGAGCACTACGTCGGCCAAAGAGCCGGGATGCACAAGCCC
835 ACCGACGAAACGAGCGGACGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCGCAAGCCG
* * *
47832 TGGATCGATACGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCAATGCCAATGCCATTT
1 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
*
47897 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGAC
66 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* *
47962 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCAAGATTTTTTAAAAATTTTTTCA
131 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCA
* * * * * *
48027 AAAAGAG-TTTAGCCCAAAACCTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
196 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* *
48091 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAG
261 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
48156 ACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTCTGAGTT
326 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
48220 CTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
391 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * ** *
48285 AGTGCACACACCCGCCCGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
456 TGTGCGCACACCC-CCCG-CCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* *
48350 GATGCTCTGGCGATGATGCCCCGGGCGAAAAAAA
519 GATGCTCTGGCGATGGTGCCCAGGGCGAAAAAAA
48384 ATGCGACAGT
Statistics
Matches: 2802, Mismatches: 374, Indels: 116
0.85 0.11 0.04
Matches are distributed among these distances:
880 15 0.01
881 41 0.01
882 476 0.17
883 1 0.00
888 225 0.08
889 231 0.08
893 28 0.01
894 24 0.01
895 291 0.10
896 22 0.01
897 286 0.10
898 312 0.11
899 71 0.03
900 12 0.00
901 24 0.01
902 457 0.16
903 240 0.09
904 19 0.01
905 27 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (896 bp):
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCA
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
TGCTCTGGCGATGGTGCCCAGGGCGAAAAAAATATAGCACCAGCACATGCCCGAGCCCAGCATGT
GCACCCGTAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
GCAGGATGCACAAGCCGGGGATCGACTCGGGTCCCCCCTTACGTGCTATTGATCCTACTACCACA
ACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAAC
GAGCGGACGGGCGGGCACTACGCCGGCCAAAGAGGCGGGATGCGCAAGCCG
Found at i:60435 original size:899 final size:883
Alignment explanation
Indices: 56632--61385 Score: 5014
Period size: 893 Copynumber: 5.3 Consensus size: 883
56622 TGCACATGCT
* *
56632 CATGTGCTGCTGTCGCA-TTTTTTTTCCCCCGGGGCACCATCGCCAGAGCATC-TCCGGAGAACC
1 CATGTGCTGGTG-C-CATTTTTTTTTCGCCCGGGGCACCATCGCCAGAGCATCGT-CGGAGAACC
* * * * * *
56695 TGACCGGCGGCATTAGGGTTCCGATGATTGGGGGGGCGGGCGGGTGTGTGCACTTGATGTGCGAT
63 TGACAGGCGGCATTGGGGTTCCGACGATTGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGAT
* *
56760 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CT
127 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
*
56824 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAAATGGGG
192 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
56889 ACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGTGCA
257 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
56954 TGCCAAAAAAAATACAAGGATCACATCTACCAGGTTTTGGGCTAAACTCCTTTTGAAAAAATTTT
322 TGCCAACAAAAATACAAGGATCACGTCTACCA------AGGCAAAACTCC-TCTGAAAAAATTTT
* * * *
57019 TAAAAAATCCTGAACCATAAAAAGTTTAGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
380 AAAAAAATTC-GAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
57084 TTAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGG
444 -TGAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * *
57149 CATTGCAGATATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCAGGGCTTGTGCAT
508 CATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC--GCCTTGCGCAT
** * * * *
57214 CCCGACTCTTTGGCCGAAGTAGTGCCCGCTCGCCCGCTCGTTTCATCGGTTGGTTTAGGCATATG
571 CCCGACTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * *
57279 GAGTTCATTCCCAGTCTAAGATTAGACCGGA-CTGAG-GGTTATGGTAGTAGGATCGGTAGCACG
636 GAGTTCATTCCCAGTCTAAGATCAGACC-GATC-GAGAGGTTATGGTAGCAGGATCGGCAGCACG
* * * * * *
57342 CAAGGGGGGACCCAGTCGATCCCCTGCTTGTGCATCCTGACCCTCTGGCCGGTTAAGCGCTCGCA
699 C-AGGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
57407 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATGCGGAGTTCAT
763 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATACGGAGTTCAT
* *
57472 TCCCAGTGTAAGATCGGACCGGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGGG
828 TCCCAGTGTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGG
* * ** * * *
57528 CATGTACTGGTGCTACATTTTTTTCACCCTGGGCACCATCGTCAGAGCATCG-CTGGAGAACCTG
1 CATGTGCTGGTGCCATTTTTTTTTCGCCCGGGGCACCATCGCCAGAGCATCGTC-GGAGAACCTG
* * **
57592 ACAGCCGGCATTGGGGTTTCGGTGATT-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
65 ACAGGCGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * *
57656 TGCT-GTATTTGG-CGTTATTAAATTTGG--CCCTAAT-CCTCATGAAACCTTCCA-AA-TCACT
130 TGCTGGTACTTGGCCCTTA-T--A-TTGGCCCCCT-ATCCCTCATCAAACCTT-GAGAACTCAC-
* *
57714 A--CCCTT-TAGAGC--TTGAGATTTTATCAGGTTTGGCTG-CAATAGCCATTAAAGTGTCTGAA
188 ACCCCCTTAAAGAGCATTTGAGATTTTA-CAGGTTT-GCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
57773 AT-GGGACAAC-TTTTTC-AAT-GT--CAAAATCCCTGTA-ACTTCGAGTTTTAAGGTGAATATT
251 ATGGGGAC-ACTTTTTTCAAATGGTCACAAAAT-CCTGTACACTTCGAGTTTTTAGCTGAAT-TT
* *
57831 TTTTGTGCAGTGCCAAC--AAATACAAGGATCA--TCTACCAAGTTTAGGGCAAAAGTCCT-TTA
313 TTTTGTGCA-TGCCAACAAAAATACAAGGATCACGTCTACC-A----A-GGCAAAACTCCTCTGA
* * * *
57891 AAAATCTTTTAAAAAAATTCAAACCGT-AAAAGTTT-CAAAATCGTGAAAAATAGAAAACGAGTT
371 AAAA-ATTTTAAAAAAATTCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAG--
*
57954 TCCGTCTTGCCATGAACTTCACATGAA-G-TTAAGGGACCATTGTATGGATTTTA-AAG-CATAA
433 T-CGTCTTGCCATGAACTTCACATGAAGGCTTAAGGGACCATTGTAT-GAATTTACAAGCCATAA
* * * * *
58015 AAATGGCAATGGCATGGCATAAATATGAAGATGTGCCT-AA--CA-CTTCCAAGCCTGTCGATCA
496 AAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACC-ACCCTATCGATC-
* * *
58076 ACG-CTTGCGCAT-CC-ACTCTATGG--GGCATA-TGCCCGCCC-CCCTG-T-GTTTCATCGGGT
559 -CGCCTTGCGCATCCCGACTCTTTGGCCGGCGTAGTGCCCGCCCGCCC-GCTCGTTTCGTC-GGT
* * * * * *
58132 TGGCTTAGGCATACGAAGTTCAATT-CCAGTCTAACGATCACTA-CGAACGA-AGGGTATTCAGC
621 TGGCTTAGGCATACGGAGTTC-ATTCCCAGTCTAA-GATCA-GACCGATCGAGAGGTTA-T-GGT
*** * ** * *
58194 AGCAGGATCAATAGCATGCAGGAGGGGACCCGACCGATTCCCC-GCTTTGTGCCATGCTAACCCC
681 AGCAGGATCGGCAGCACGCAGG-GGGGACCCGGTCGA-TCCCCGGC-TTGTG-CATCCT-GCCCC
* * *
58258 TCTGGCCGGCTGAAGTGCCCGTAC-CTCGTTTACGTGGGGTTGACTGAGGCATACGGAGTTCATT
741 TCTGGCCGGCTG-AGCGCCCGCACGCTCGTTT-CGT-GGGTTGACTTAGGCATACGGAGTTCATT
* * *
58322 CCCAGGTCT-AACAATATGGAGTTCATTCCCAGTGT-AGATCGGACACAGACCGAAGGATTACGG
803 CCCA-GTCTAAAC-ATACGGAGTTCATTCCCAGTGTAAGATCGGAC-CGGACCG-AGGGTTACGG
* *
58385 GTGCACATGTTGGGGCTCGAG
864 GTGCACATGCT-GGGCTCGGG
* * * * * *
58406 AATGTTGCTGGTGCCATATTTTTTTCGCATCGGGGCAACCATTCGTCGGAAGCTATCGTCGAAGA
1 CATG-TGCTGGTGCCATTTTTTTTTCGC-CCGGGGC-ACCA-TCGCCAG-AGC-ATCGTCGGAGA
* * * * *
58471 ACCTAACCGGCGGCATTGGGGTTTCCGGCGATTGGGGGGGCGGGGGGGAGTGTGCCCACATGATG
60 ACCTGACAGGCGGCATTGGGG-TTCCGACGATT-GGGGGGC-CGGGGG-GTGTGCGCACATGATG
* * * *
58536 TCCGATGGGATGCTGGTACATGGCCCTTATAATTGG-CCACTA--CCTTATCAAACCTTCGAGAA
121 TGCGATGGG-TGCTGGTACTTGGCCCTTAT-ATTGGCCCCCTATCCCTCATCAAACCTT-GAGAA
* * * * *
58598 CTCAACGCCCCCTT-AA-AGCAAATTGAAGA-TTTACAGGTTTGCAGCGCAATAGCCCACT-AAG
183 CTC-ACACCCCCTTAAAGAGC-ATTTG-AGATTTTACAGGTTTGCTGC-CAGTAG-CCATTAAAG
* *
58659 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAAATCCTGTACACATCGAG-TTTTAGCT
243 TGTCTGAAATGGGGACACTTTTTTCAAATGGTC-ACAAAATCCTGTACACTTCGAGTTTTTAGCT
58723 GAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATC-CTGTCTACCAAGTTTGGGGGCAAAAAC
307 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAA-------GGC-AAAAC
* ** * * * * *
58786 TCTTCTGAAAAAATTTTAAAAAATACCCAAACTGTAAAAAGTTTCAAAAATCGTGAATAATAGAA
363 TCCTCTGAAAAAATTTTAAAAAA-ATTCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAA
*
58851 AACGAGTCATCTTG-CATGAAACTTCACATGAAGGCTT-AGGGACCATTGTATGAATTTACAAGC
427 AACGAGTCGTCTTGCCATG-AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
58914 CATAAAAATGGCATTGGCA-GGCAAAAATATGAAGATGTG-CTAAACCCACCTACCACCTTATCG
491 CATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
58977 ATCCACAGCTTGCGCATCCCG--TCTTCTAGCCGGCGTAGTGCCCACCCGCCCGCTCGTTTCGTC
556 ATCCGC--CTTGCGCATCCCGACTCTT-TGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTC
* * *
59040 GGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG-GGTTGTGGTA
618 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GATCGAGAGGTTATGGTA
** * * * * **
59104 GCAGGATCAACAACACGTAGGGGGGACACGGCCGATCCCCGGCTTGCCCATCCTGCCCCTCTGGC
682 GCAGGATCGGCAGCACGCAGGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGC
* * * * * ** **
59169 AGGTTGAGCACCCACATGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCGTAGTCTA
747 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
59234 AACATACAGAGTTCATTCCCAATGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTAG
812 AACATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGG
*
59299 GCTCAGG
877 GCTCGGG
* * * * * * **
59306 AATGTGCTGGTGCCACATTTTTTTTCGCCCAGGGCACCATCACCGGACCATCACCGGAGAACCTG
1 CATGTGCTGGTGCCA-TTTTTTTTTCGCCCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTG
* * * * *
59371 ACCA-GCGGCATTGGGGTTCCGGCAATT--------GGGGGGTATGCACACATGATGTGCGCTGG
65 A-CAGGCGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
59427 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
129 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
*
59492 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAT
194 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
59557 ACTTTTTTCAAATGGTCACGAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTATGCATG
259 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* *
59622 GCAACAAAAATACAAGGATCACGTCTACCAA-GCAACACTCCTCTGACAAAAATTTTAAAAAAAT
324 CCAACAAAAATACAAGGATCACGTCTACCAAGGCAAAACTCCTCTGA-AAAAATTTTAAAAAAAT
* *
59686 TCGAACCATAAAAAGGTTTTTAAAAAATCATGAAAAAAAGAAAACGAGTCGTCTTGCCATGAACT
388 TCGAACCGTAAAAA-G--TTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAACT
* *
59751 TCCCATGAAGGCTTAAGGGACACATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGGC
450 TCACATGAAGGCTTAAGGGAC-CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
59816 AAAAATTATGAAGATGTGCCTAAACCCACCTACCACCCTAATCGATCCTGCCTTGCGCAATCCCG
514 AAAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCT-ATCGATCC-GCCTTGCGC-ATCCCG
* * * * *
59881 CCTCTTTGGCCGACGTAGTGCCC-CCCGCCCGCTCGTTTCGGTCTGTTGGCATAGGCCTAACAGA
575 ACTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTC-GTCGGTTGGCTTAGGCAT-AC-G-
* * * * * * *
59945 GGGTTCATTCCCAATCTAAGATCAGTACCTGTATCGAGAAGTTGGTGATAGTAGGATCGGGCATC
636 GAGTTCATTCCCAGTCTAAGATCAG-ACC-G-ATCGAGAGGTT-ATGGTAGCAGGATC-GGCAGC
* * *
60010 CCGTACGGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCCTATGGCCGGCTGAGCGCCC
696 ACGCA-GGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
60075 GCACACTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
760 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATACGGAGTT
* * * **
60140 TATTCCCAGTGTAGGATCGGACTGGACCGAGGGTTACGGGTGCACATGCTGGGCTCAAG
825 CATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGG
* *
60199 CATGTGCTAGTGCCATTTTTTTTTCGCCCGAGGCACCATCGCCAGAGCATCGTCGGAGAACCTGA
1 CATGTGCTGGTGCCATTTTTTTTTCGCCCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGA
* * *
60264 CAGGCGGCATT-GGGTTACGACGATTGGGGGGCCGGGGGGTGTGCGTACATGATCTGCGATGGGT
66 CAGGCGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* **
60328 GCTGGTACTTGGCTCTTATATTGGCCCCCTATTTCTCATCAAACCTTGAGAACTCACACCCCCTT
131 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
*
60393 AAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
196 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
60458 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCC
261 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
60523 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAGCT-TTTTAAAAAAATTTT-A
326 AACAAAAATACAAGGATCACGTCTACCAA------GG-C-AAAA-CTCCTCTGAAAAAATTTTAA
* * * *
60586 AAAAATCTGGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCCTG
382 AAAAAT-TCGAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
60651 AAACTTCACATGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATCGGCA
446 -AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * * *
60716 TGGCAAAAATATGAAGATATGCCTAAACACACCTACCACCCTACCGATCCACGACTTACGCATCT
510 TGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT-C-CGCCTTGCGCATCC
* * * * *
60781 CGCCTCTCTAGCCGGCGTAGTGCCCGCCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGT
573 CGACTCTTTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * *
60846 GTTGATTCCCAGTCTAAGATCAGACCAAATAGA-AGGTCACGGTAACAGGATCGACAGCATGCAA
638 GTTCATTCCCAGTCTAAGATCAGACC-GATCGAGAGGTTATGGTAGCAGGATCGGCAGCACGC-A
** * * * * * *
60910 GGGGAAACCCGGTCGATCCTCGACTTGTGCATCCTGCCCTTCTGG-CGACTGAGCTCTCGCACGC
701 GGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
*
60974 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
766 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATACGGAGTTCATTCC
* * * *
61039 CAATGTAAGATCGGATCGGATCGAGGGTTACAGGTGCACATGCTGGGCTCGGG
831 CAGTGTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGG
* * * **
61092 CATGTTCTGGTGTCGCA-TTTTTTTTCGCCCGGGGCACTATCGCCAGAGCATTGTCTAAGAACCT
1 CATGTGCTGGTG-C-CATTTTTTTTTCGCCCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCT
* * * * * * * *
61156 GATC-GGCGGCAATGGGGTTCCGACTACTGGAAGGGCAGGGGGGTGTGAGAACATGATGTGAGAT
64 GA-CAGGCGGCATTGGGGTTCCGACGATTGG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * *
61220 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACATCGAGAACTCACACCC
127 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCC
* **
61285 CCTTAAAAAGCATTTGAGATTTTACAGGTTTATTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
192 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
**
61350 ACACTTTTTTCAAATGACCACAAAATCCTGTACACT
257 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
61386 GGGAGTTCAT
Statistics
Matches: 3260, Mismatches: 402, Indels: 392
0.80 0.10 0.10
Matches are distributed among these distances:
867 8 0.00
868 42 0.01
869 22 0.01
870 33 0.01
871 10 0.00
872 13 0.00
873 21 0.01
874 45 0.01
875 73 0.02
876 29 0.01
877 71 0.02
878 60 0.02
879 101 0.03
880 28 0.01
881 68 0.02
882 161 0.05
883 122 0.04
884 79 0.02
885 53 0.02
886 17 0.01
887 37 0.01
888 26 0.01
889 57 0.02
890 46 0.01
891 50 0.02
892 86 0.03
893 356 0.11
894 150 0.05
895 138 0.04
896 200 0.06
897 17 0.01
898 31 0.01
899 294 0.09
900 39 0.01
901 28 0.01
902 119 0.04
903 148 0.05
904 122 0.04
905 80 0.02
906 30 0.01
907 34 0.01
908 20 0.01
909 27 0.01
910 19 0.01
911 43 0.01
912 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
CATGTGCTGGTGCCATTTTTTTTTCGCCCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGA
CAGGCGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAATACAAGGATCACGTCTACCAAGGCAAAACTCCTCTGAAAAAATTTTAAAAAAATTCG
AACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAACTTCACAT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCCTTGCGCATCCCGACTCTTTGGCC
GGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
CTAAGATCAGACCGATCGAGAGGTTATGGTAGCAGGATCGGCAGCACGCAGGGGGGACCCGGTCG
ATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
ACTTAGGCATACGGAGTTCATTCCCAGTCTAAACATACGGAGTTCATTCCCAGTGTAAGATCGGA
CCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGG
Found at i:61047 original size:26 final size:26
Alignment explanation
Indices: 60995--61047 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
60985 GTTGACTTAG
*
60995 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
61021 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
61047 G
1 G
61048 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:70944 original size:26 final size:26
Alignment explanation
Indices: 70915--70967 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
70905 CTTCACTTAG
70915 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
70941 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
70967 G
1 G
70968 ATTAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:72497 original size:897 final size:894
Alignment explanation
Indices: 68150--74186 Score: 7774
Period size: 896 Copynumber: 6.7 Consensus size: 894
68140 GGGTGTGACA
* *
68150 CAGGAGGGGACCCGGAT-GATCCCCGGCTTGTGCATCTTGCCCCTCTGGCCGGTTGAGTGCCCGC
1 CAGG-GGGGACCCGG-TCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGC
* * * *
68214 ATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCTTTCCTAGTCTAAGCATATGAAGTTCA
64 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCA
* * * * *
68279 TTCCCAGTGTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGTTGGGCTCGGGCATGTGCT
129 TTCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCT
* * *
68344 AGTGTCACATTTTTTTT-CGTCCGGGG---CA-C-T------ATCGCCGGAGAACCTGACCGACG
194 -GTGTCGCATTTTTTTTGC-CCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACG
* * * *
68397 GCATTGGGGTTCTGGCGATTG-GGGGGTGTGGGTGGTGTGCGCACATGATGTGCAATGGGTGCTG
257 GCATTGGGGTTCCGACGATTGAGGGGG-G-GGG-GGGGTGCGCACATGATGTGCGATGGGTGCTG
** *
68461 GTACTTGGCCCTTATATTCACCCCCTAAACCCTCATCAAACCTC-AG-ACTCACA-CCCCTTAAA
319 GTACTTGGCCCTTATATTGGCCCCCT-ATCCCTCATCAAACCTCAAGAACTCACACCCCCTT-AA
* *
68523 AGAGCCATTTGAGA-TTTA-TGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAAATGGGGACAC
382 AGAG-CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACAC
* * *
68586 TTGTTTTCAAAAGGGCCACAAAAT-CTGTACACTTCGAGTATTTAGCCTGGAATTTTTTTGTTGC
445 TT-TTTTC-AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG-CT-GAATTTTTTTG-TGC
* ** * *
68650 ATGCCAA-AAAAATACAAGGATCACGTTCTAACAAGTTTGGGGTTAAAAATACCTTCTG-AAAAA
505 ATGCCAACAAAAATACAAGGATCACG-TCTACCAAGTTTGGGGCCAAAACT-CCTTTTGAAAAAA
*
68713 TTTTAAAAAAACCT-GAACCGT-AAAAGTTTCAAAAATCGTG-AAAATAAGAAAACGGAGTCGTC
568 TTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT-AGAAAAC-GAGTCGTC
*
68775 TTGCCATGAAACTTCAC-CG-AGGCTTAA-GGACCATTGTATGAATTTACAAGCCAT-AAAATGG
631 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
68836 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACATACCAACCTATCGATCCACGGTTT
696 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** *
68901 GCG-AGTCCTGCCTCTCTGGCCGGCGTAGTGCCCGTTCGCCCGCTCGTTTCATCGGTTGGCTTAG
761 GCGCA-TCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAG
* * * * **
68965 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGTAGGATTGGTA
825 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
*
69030 GTATG
890 GCATG
* * * * * * **
69035 CAGGGGGGACCCAGTCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGTCGGTTAAGCACCCGCAC
1 CAGGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCAC
* * * *
69100 GCTCGTTTCGT-TGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCAAACGGAGTTCATT
66 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATT
*
69164 CCCAGTGTAAGATC-GAACCAGACCGAGGGTTGCAGGTACACATGCTGGGCTCGGGCATGTGCTG
131 CCCAGTGTAAGATCAG-ACCAGACCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTG
* * ** *
69228 TTGCCGTATTGTTTTTTG-CCTAGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGG
195 -TGTCGCATT-TTTTTTGCCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGG
* * * * * * *
69292 CACTGGGGTTTCGGCGTTTGAGGGGGGCGGGGGGGTGTGGCACAAGATGTACGATGGGTGCTGGT
258 CATTGGGGTTCCGACGATTGAGGGGGG-GGGGGGGTG-CGCACATGATGTGCGATGGGTGCTGGT
* *
69357 ACTTGCCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAATAG
321 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
69422 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
386 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* **
69487 CAAATGGTCACAAAATCCTGTACACTTCGATTTTTTAGCAAAATTTTTTTGTGCATGCCAACAAA
451 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
*
69552 AATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTTTGAAAAAATTTTAAACAAATC
516 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAAATC
* * * *
69616 CCGAACCATAAAAAGTTTCAAAAATCGTGAAAAACAGAAAACGAGTCATCTTGCCATGAAACTTC
581 TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * * * * * ***
69681 ACGTGAAGGCTTAATGGATCGTTGTATGAATTTAGAGGCCATAAAAATGGCATTGGCACAACAGA
646 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
* * *
69746 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTACGCATCCCGTCTCT
711 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCT
* * *
69811 CTAGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
776 CTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* * * ** * * *
69876 CCCAGTATAAGATCAGACCGAACCGAGGGTTACTATAGCAAGATCGATAGGATG
841 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCATG
* * *
69930 CAGGGGGGGACCCGATCGATCCCCGACTTTTGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCA
1 CA-GGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCA
* * *
69995 CGGTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGACTAAGCATACGGAGTTCAT
65 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCAT
* ** * * * *
70060 TCCCAGTGTCAGATCAGACC-GAACTAAAGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCT
130 TCCCAGTGTAAGATCAGACCAG-ACCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCT
* * * * ** * * *
70124 GGTGCCGTATTTTTTTTTG-TCAGGGGCACCATCGTTAGAGCATCGTAGGAGAACCTGACAGACA
194 -GTGTCGCA-TTTTTTTTGCCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACG
* * *
70188 GCATTGGGGTTCCAACGATTGGAGGGGTGGGGTGGGGGTGTGTGCACATGATGTGCGATGGGTGT
257 GCATTGGGGTTCCGACGATT-GA-GGG-GGGG-GGGGG-GTGCGCACATGATGTGCGATGGGTGC
* * *
70253 TGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCAAGAAGTTACACCCCCTTAA
317 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
* *
70318 AGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAATGGGGACACTT
382 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * * * *
70383 TTTTCAATTGGTCACAAAAT-TTGTACGCTTCGAGTTTTTTGCTGAATTTTTTTGAGCATCCCAA
447 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * ***
70447 AAAAAATAAAAGGATCACGTATACCAAGTTTGGTTTCAAAACT-CTTTCTG-AAAAATTTTAAAA
512 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT-TGAAAAAATTTTAAAA
* *
70510 AAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
576 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
70575 ACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCATG
641 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
70640 GCAAAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATTGATCCATGGCTTGCGCATCCCG
706 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *** *
70705 CTTCTCTGGCCGGCGTAGTGCCCGCTTGCCCGCTCATTTCATCGGTT-GCTTAGGCATACGGAGT
771 CCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
** * * *
70769 TCATT-CCAGTCTAAGATTGGACCGGACCGAGGATTGTGGTAGCAGGATCAACAGCATG
836 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCATG
* * * * * *
70827 CTGGGGTGGACTCGGTCGATCCCCAGCTTGTGCATGCTG-CCCTCTGGCCGGCTGAGAGCCCGTA
1 CAGGGG-GGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCA
* * * *
70891 CGCTCATTTCGTGGCTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
65 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCAT
* * * * * * * *
70956 TCCTAGTGTAAGATTAGATCAGACCGAGGGTTGTAGGTGCATAGGCTAGGCTCGAGCATGTGCTG
130 TCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTG
* * *
71021 -GTAC-CGATTTTTTTTTG-CTCGGGGCACCATCGTTGGAGCATCGTCGGAGAATCTGACCGACG
195 TGT-CGC-A-TTTTTTTTGCCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACG
* *
71083 GCATTGGGGTTCCGACGATTG-GGGTGCGGGGGGGGATGTGCACACATGATCTGCGATGGGTGCT
257 GCATTGGGGTTCCGACGATTGAGGG-G-GGGGGGGG--GTGCGCACATGATGTGCGATGGGTGCT
*
71147 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
318 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
* *
71212 GAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACAC-TT
383 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
71276 TTTCAAATGGTCACAAAATCCTGTACACGTCGAGTTTTTAGCTGAAGTTTTTTGTGCATGCCAAC
448 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
71341 AAAAATACAAGGATTATGTCAACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAA
513 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAA
* *
71406 ATCTCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
578 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
71471 TTCACATGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCATTGGCATGGT
643 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
* *
71536 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCGTCCCGCC
708 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* ** * * * * * *
71601 TCTTTGGCTAGCATAATGCCCGCCCATCCACTCGTTTCGTCGGTTGGCTTAGGCGTACGGAGTTC
773 TCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
** * ** * * * *
71666 ATTCCCAGTCTAAGATTGGATCGGATTGAGGGTTGCGGTAGTAGGATTGGCAGTATG
838 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCATG
* * * * * * *
71723 CAGGGGGGACCCGGTCGATCCCCGGTTTACT-CATCCTGCCCCTCTGGCCGGATAAGCGGCTGCA
1 CAGGGGGGACCCGGTCGATCCCCGGCTT-GTGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCA
* *
71787 CGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCAAACGGAGTTCAT
65 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCAT
* * *
71852 TCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCAGGAGCACATGCTGGGCTCAGGCATGTGCTG
130 TCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTG
* * ** * **
71917 ATGTCACATTTTTTTTGCCCCGGGCCACCATCGTCGGAGCATCACCGGAGAACTTGACCGACAAC
195 -TGTCGCATTTTTTTTGCCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGC
* * *
71982 ATTGGGGTTTCGACGATTGAGGGGGGCGGGGGGCTGCGCACATGATGTGCGATGGATGCTGGTAC
259 ATTGGGGTTCCGACGATTGAGGGGGG-GGGGGGGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
72047 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAATAGCA
323 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
*
72112 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCA
388 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * **
72177 AATGGTCACAAAATCCTGTATACTTCGATTTTTTAGCAAAATTTTTTTGTGCATGCCAACAAAAA
453 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* ** *
72242 TACAAGGATCACGTCTACCGAGTTTGTTGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAATCT
518 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTT-AAAAAAATCT
* *
72307 CGAACCGTAAAAAATTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
582 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
***
72372 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAACAGAA
647 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
* * *
72437 ATATGAAGATGTGGCTAAACCCACCTACCACCCTATCGATCCACGACTAGCGCATCCCGCCTCTC
712 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
* * *
72502 TAGCCGGCGTAGTGCCCGCCCACCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
777 TGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
* ** * ** * * * *
72567 CCAGTCTAAGATCGGACCAAACTGAGGGTTGCTATAGTAGGATCGATAGGACG
842 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCATG
* ** * * *
72620 TAGGGGGGGACCCGACCGATCCCCGGCTTATGCATCCTACCCCTCTGGCCAGCTGAGTGCCCGCA
1 CA-GGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCA
*
72685 CGGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCAT
65 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCAT
* * ** * * * *
72750 TCCTAGTGTCAGATCAGACTGGACTGAAGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGTTG
130 TCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCT-
* * * * ** *
72815 GTGCCGTATTTTTTTT-CGCCAGGGGCACCATCGTCAGAGCATCGTAAGAGAACCTGACAGACGG
194 GTGTCGCATTTTTTTTGC-CCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGG
*
72879 CATTGGGGTTCCGACGATTGGAGGGGTGGGGTGGGGGTGTGTGCACATGATGTGCGATGGGTGCT
258 CATTGGGGTTCCGACGATT-GA-GGG-GGGG-GGGGG-GTGCGCACATGATGTGCGATGGGTGCT
** * *
72944 GGTACTTGGCCCTTATATTTTCCCCCTATCCCTCATCAAACCTCAAGAACTCCCACCCCCTTTAA
318 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
* *
73009 GAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTT
383 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
73074 TTTCAAATGGTCACAAAATCCTGTACACTTCCAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAG
448 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
73139 AAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAAATCTTTTTGAAAAAATTTTAAAAAA
513 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAA
* * * *
73204 ATCTGGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCCATGAAAC
578 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
73269 TTCACATTAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGT
643 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
* ** * *
73334 AGAAATATGAAAATGTGCCTAAACCCATATACCACCCTATTGATCCACGGCTTGCGCATCCCGCT
708 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* *** * *
73399 TCTCTGGTCGGCGTAGTGCCCGTTTACCCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTC
773 TCTCTGGCCGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC
* * * * * *
73464 ATTCCCAGTCTAAGATCAAACCGGACTGAGGGTTGTGGTA-CAGGATCGGCAACACG
838 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCATG
** * * * * * * * *
73520 TTGGGGTGGACTCGGCCGATCCCCAGCTTGTGCATCCT-ACCCTCTGGTCAGCTGAGAGCCCGTA
1 CAGGGG-GGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCA
* * *
73584 CGCTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
65 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCAT
* * * *
73649 TCCCAGTGTAAGATCAGATCAGATCGAGGGTTGTAGGTGCACATGCTAGGCTCGGGCATGTGCTG
130 TCCCAGTGTAAGATCAGACCAGACCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTG
* *
73714 -GTACTGCATTTTTTTTG-CTCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGACCGACGG
195 TGT-C-GCATTTTTTTTGCCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGG
* * *
73777 CATTGGGGTTCCGACGATT-AGGGGGAGGGGGGGATGAGTGCACATGATGTGCGATGGGTGCCGG
258 CATTGGGGTTCCGACGATTGAGGGGG-GGGGGGG--GTGCGCACATGATGTGCGATGGGTGCTGG
* * *
73841 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAAA
320 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGA
* * * * **
73906 ACATTTGAGATTTTACAGATTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATTTGGACACTTTTT
385 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
73971 TCAAATGGTCACAAAATCCTGTACACGTT-GAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAAC
450 TCAAATGGTCACAAAATCCTGTACAC-TTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAAC
* ** * * *
74035 AAAAATACGAGGATTGCGTCAATCAAGTTTGGGGCCAAAACTCTTTTTGAAAAAATTTTAAAAAA
513 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAA
* *
74100 ATCTCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
578 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
74165 TTCACATGAAGGCTTAAGGGAC
643 TTCACATGAAGGCTTAAGGGAC
74187 AACTATCGAA
Statistics
Matches: 4492, Mismatches: 575, Indels: 159
0.86 0.11 0.03
Matches are distributed among these distances:
882 2 0.00
883 113 0.03
884 67 0.01
885 4 0.00
886 2 0.00
887 1 0.00
888 1 0.00
889 6 0.00
890 24 0.01
891 51 0.01
892 85 0.02
893 266 0.06
894 387 0.09
895 666 0.15
896 695 0.15
897 587 0.13
898 325 0.07
899 449 0.10
900 222 0.05
901 284 0.06
902 255 0.06
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (894 bp):
CAGGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATT
CCCAGTGTAAGATCAGACCAGACCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGT
GTCGCATTTTTTTTGCCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCAT
TGGGGTTCCGACGATTGAGGGGGGGGGGGGGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAAATCTCGAA
CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGC
CGGCGTAGTGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
TCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGACAGCATG
Found at i:73637 original size:26 final size:26
Alignment explanation
Indices: 73608--73660 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
73598 GTTCACTTAG
73608 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
73634 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
73660 G
1 G
73661 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:74993 original size:810 final size:812
Alignment explanation
Indices: 73433--74996 Score: 2225
Period size: 819 Copynumber: 1.9 Consensus size: 812
73423 TACCCGCTCG
73433 TTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTT
1 TTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTT
* * * * *
73498 GTGGTACAGGATCGGCAACACGTTGGGGTGGACTCGGCCGATCCCCAGCTTGTGCATCCTACCCT
66 GTGGCACAGGATCGGCAACACGTAGGGGTGGACCCGACCGATACCCAGCTTGTGCATCCTACCCT
* * *
73563 CTGGTCAGCTGAGAGCCCGTACGCTCATTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCCA
131 CTGGTCAGCTGAGAGCCCGCACGCTCATTTCATGGGTACACTTAGGCATACGGAGTTCATTCCCA
* * * * * *
73628 GTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAGATCAGATCGAGGGTTGTAGGTGCACAT
196 GTCTAAGCACACAGAGCTCATTCCCAGTGTAAGATCAGATCAGACCGAGGATCGTAGGTGCACAT
** * * * * *
73693 GCTAGGCTCGGGCATGTGCTGGTACTGCATTTTTTTTGCTCGGGGCACCATCGTCGGAGCATCGT
261 GCTAGGCTCAAGCATGTGCTGGTACCGCATTTTTTTTGCCCGGGGCACCATCGCCGGAACATCGC
** * *
73758 CAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTAGGGGGAGGGGGGGATGAGTGCACATG
326 CAGAGAACCTGACCGACGGCATTGGAATTCCGACGATT-----G-GGGCGGGATGAGCGCACATG
*
73823 ATGTGCGATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
385 ATGTGCAATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
73888 CTCACACCCCTTTAAAAAACATTTGAGATTTTACAGATTTGTTGCCAGTAGCCATTAAAGTGTCT
450 CTCACACCCCTTTAAAAAACATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCT
** *
73953 AAAATTTGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACGTTGAGTTTTTAGCTGAATTT
515 AAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACATTGAGTTTTTAGCTGAATTT
* * ** * * *
74018 TTTTTGTGCATGCCAACAAAAATACGAGGATTGCGTCAATCAAGTTTGGGGCCAAAACTCTTTTT
580 GTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCTGTCT
* *
74083 GAAAAAATTTTAAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAG
645 GAAAAAATTTTAAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAG
74148 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACAACTATCGAACCACGGCTTGCGTATC
710 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACAACTATCGAACCACGGCTTGCGTATC
74213 CCGCCTCTCTACCGGCGTAGTGCCCACCCGCCCACTTA
775 CCGCCTCTCTACCGGCGTAGTGCCCACCCGCCCACTTA
* * * * *
74251 TTTCGTCGGTTGGCTTAGGTATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGGGGGT
1 TTTCATCGATTGGCTTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGT
* * *
74315 TGTGGCAGCAGGATTGGCAACACGTAGGGG-GGACCCGATCGATACCCAGCTTGTGCATCCTGCC
65 TGTGGCA-CAGGATCGGCAACACGTAGGGGTGGACCCGACCGATACCCAGCTTGTGCATCCT-AC
* * * ** *
74379 CCTCTGGTCGGTTGAGCGCCCGCACGCTTGTTTCATGGGTAGACTTAGGCATACGGAGTTCATTC
128 CCTCTGGTCAGCTGAGAGCCCGCACGCTCATTTCATGGGTACACTTAGGCATACGGAGTTCATTC
* *
74444 CCAGTCTAAGCACACAGAGCTCATTCCCAGTGTAAGATCGGA-CTGGACCGAAGGATACG-AGG-
193 CCAGTCTAAGCACACAGAGCTCATTCCCAGTGTAAGATCAGATC-AGACCG-AGGAT-CGTAGGT
* *
74506 GCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGCCGGA
255 GCACATGCTAGGCTCAAGCATGTGCTGGTACCGCATTTTTTTT-GCCCGGGGCACCATCGCCGGA
* ** *
74571 ACATCGCCAGAGAACCTGACCGACGGCATTGGAATTCTGGTGATT-GGGCGGG-TGTGCGCACAT
319 ACATCGCCAGAGAACCTGACCGACGGCATTGGAATTCCGACGATTGGGGCGGGATGAGCGCACAT
* * *
74634 GATGTGCAATGGGTGCTGGTAAC-TGGCCCTTATATTGGCCCCTTATCCCTCATCAAAGCTCGAG
384 GATGTGCAATGGGTGCCGGT-ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
74698 AACTCACA-CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
448 AACTCACACCCCTTTAAAAAACATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGT
*
74762 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA-ATTCGAGTTTTTAGCTGAA
513 CTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACATT-GAGTTTTTAGCTGAA
* * **
74826 -TTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCGAGTTTGTTGCCAAAACTCTG
577 TTTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCTG
* *
74890 TCTGAAAAAATTTTTAAAAAATCCCGAA-CTGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAA
642 TCTGAAAAAATTTTAAAAAAATCCCGAACCT-TAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
*
74954 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAC
706 CAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAC
74997 CATTGTATGA
Statistics
Matches: 661, Mismatches: 75, Indels: 28
0.87 0.10 0.04
Matches are distributed among these distances:
809 2 0.00
810 154 0.23
811 109 0.16
812 74 0.11
813 8 0.01
817 1 0.00
818 91 0.14
819 157 0.24
820 64 0.10
821 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (812 bp):
TTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGGACTGAGGGTT
GTGGCACAGGATCGGCAACACGTAGGGGTGGACCCGACCGATACCCAGCTTGTGCATCCTACCCT
CTGGTCAGCTGAGAGCCCGCACGCTCATTTCATGGGTACACTTAGGCATACGGAGTTCATTCCCA
GTCTAAGCACACAGAGCTCATTCCCAGTGTAAGATCAGATCAGACCGAGGATCGTAGGTGCACAT
GCTAGGCTCAAGCATGTGCTGGTACCGCATTTTTTTTGCCCGGGGCACCATCGCCGGAACATCGC
CAGAGAACCTGACCGACGGCATTGGAATTCCGACGATTGGGGCGGGATGAGCGCACATGATGTGC
AATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCTTTAAAAAACATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACATTGAGTTTTTAGCTGAATTTGTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACTCTGTCTGAAAAA
ATTTTAAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCT
TGCCATGAAACTTCACATGAAGGCTTAAGGGACAACTATCGAACCACGGCTTGCGTATCCCGCCT
CTCTACCGGCGTAGTGCCCACCCGCCCACTTA
Found at i:75743 original size:859 final size:860
Alignment explanation
Indices: 74620--76195 Score: 2376
Period size: 859 Copynumber: 1.8 Consensus size: 860
74610 GTGATTGGGC
* *
74620 GGGTGTGCGCACATGATGTGCAATGGGTGCTGGTAACTGGCCCTTATATTGGCCCCTTATCCCTC
1 GGGTGTGCGCACATGATGTGCAATGGGTGCTGGTAACTGGCCCTTATATCGGCCCCCTATCCCTC
* * *
74685 ATCAAAGCTCGAGAACTCACACCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
66 ATCAAACCTCGAGAACTCACACCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAG
* *
74750 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAATTCGAGT
131 CCATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAATTCGAGT
* * **
74815 TTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCGAGTTTGTTGC
196 TTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * *
74880 CAAAAC-TCTGTCTGAAAAAATTTTT-AAAAAATCCCGAACTGTAAAAAGTTTCAAAAAT-TATG
261 CAAAACGCCT-TCTG-AAAAATTTTTAAAAAAATCCCAAACCGTAAAAAGTTACAAAAATCT-TG
* *
74942 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
323 AAAAATAAAAAACGACTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
* * *
75007 ATTTACAAGCCAT-AAAAATGGCATTGGCAGGGCAGAAATATGAAGATGTGCCTAAACCCACCTA
388 ATTAACAAGCCATAAAAAAGGGCATTGGCAGGGCAAAAATATGAAGATGTGCCTAAACCCACCTA
* ** *
75071 CCACCCTATCGATCCACGGCTTGCGCATCCCTTCTCTCTGTCCAGCGTAGTGCCCGCCCGCCCGC
453 ACACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGC
* * ** * *
75136 TCGTTTCGCCAGTTGGCTTAGGCATAC-AGATTTCATTCCCAGTCTAAGATCGGACCAGA-TCGA
518 TCGTTCCACCAGTTGGCTTAGAAATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACT-GA
* * * ** * *
75199 GGGTTGCGGCAGGAGGATCGGCAGCACGTA-GGGCAGACCCGGCCGATCCTTGACTTGTGAATCT
581 GGGTTGCGGCAGCAGGATCGGCAGCACGCAGGGGCAGACCCAGCCGATCCCCGACTTGCGAATCC
* * *
75263 TGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCACGTGTTGACTTAGGCATACGGAGTTC
646 TGCCCCTCTGGTAGGCTGAGCGCCCGCACGCTCGTTTCACGGGTTGAATTAGGCATACGGAGTTC
75328 ATTCCCAGTGTAAGATTAGACCGGACCGAGGGTTACGAATGCACATGCTGGGCTTGGGCATGTGC
711 ATTCCCAGTGTAAGATTAGACCGGACCGAGGGTTACGAATGCACATGCTGGGCTTGGGCATGTGC
75393 TGGTGCCGTATTTTTTTTCACCTGGGGTACCATCACCGGAGAACCTGACCGACGGCATTGGGGTT
776 TGGTGCCGTATTTTTTTTCACCTGGGGTACCATCACCGGAGAACCTGACCGACGGCATTGGGGTT
75458 TCGATGATTGGGGGGCGGGG
841 TCGATGATTGGGGGGCGGGG
* *
75478 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGT-ACTTGGCCCTTATGTCGGCCCCCTATCCCT
1 GGGTGTGCGCACATGATGTGCAATGGGTGCTGGTAAC-TGGCCCTTATATCGGCCCCCTATCCCT
*
75542 CATCAAACCTCGAGAACTCACACCCCATTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAAT
65 CATCAAACCTCGAGAACTCACA-CCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAT
* *
75607 AGCCATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
129 AGCCATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAATTCGA
* * * *
75672 GTTTTTAGCTAAATTGTTTTGTGCATGCTAGCAAAAATCCAAGGATGACGTCTACCAAGTTTGGG
194 GTTTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* *
75737 GCCAAAACGCCTTCTGATAAATTTTTAAAAAAATCTCAAACCGTAAAAAGTTACAAAAATCTTGA
259 GCCAAAACGCCTTCTGAAAAATTTTTAAAAAAATCCCAAACCGTAAAAAGTTACAAAAATCTTGA
* *
75802 GAAATAAAAAATGACTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
324 AAAATAAAAAACGACTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
* *
75867 TTAACAAGCCATAAAAAAGGGCATTGTCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTAA
389 TTAACAAGCCATAAAAAAGGGCATTGGCAGGGCAAAAATATGAAGATGTGCCTAAACCCACCTAA
* * * *
75932 CACCCTGTCGATCCACGGGTTGTGCATCCCGCCTCTCTGGCCAGCGTAGTGCCCGCCCGCCTGCT
454 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCT
* * **
75997 CGTTCCATCGGTTGGCTTAGAAATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGG
519 CGTTCCACCAGTTGGCTTAGAAATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGG
* * * ** * * * *
76062 TTGTGGCTGCAGGATCGGTAGCACGCAGGGGTTGACCTAGCCGATCCCCGGCTTGCGCATCCTGT
584 TTGCGGCAGCAGGATCGGCAGCACGCAGGGGCAGACCCAGCCGATCCCCGACTTGCGAATCCTGC
*
76127 CCCTCTGGTAGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAATTAGGCATACGGAGTTCATT
649 CCCTCTGGTAGGCTGAGCGCCCGCACGCTCGTTTCACGGGTTGAATTAGGCATACGGAGTTCATT
76192 CCCA
714 CCCA
76196 ATCAAGCATA
Statistics
Matches: 636, Mismatches: 73, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
857 2 0.00
858 87 0.14
859 273 0.43
860 181 0.28
861 93 0.15
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (860 bp):
GGGTGTGCGCACATGATGTGCAATGGGTGCTGGTAACTGGCCCTTATATCGGCCCCCTATCCCTC
ATCAAACCTCGAGAACTCACACCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAG
CCATTAAAGTATCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAATTCGAGT
TTTTAGCTAAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACGCCTTCTGAAAAATTTTTAAAAAAATCCCAAACCGTAAAAAGTTACAAAAATCTTGAAA
AATAAAAAACGACTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
AACAAGCCATAAAAAAGGGCATTGGCAGGGCAAAAATATGAAGATGTGCCTAAACCCACCTAACA
CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCAGCGTAGTGCCCGCCCGCCCGCTCG
TTCCACCAGTTGGCTTAGAAATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
GCGGCAGCAGGATCGGCAGCACGCAGGGGCAGACCCAGCCGATCCCCGACTTGCGAATCCTGCCC
CTCTGGTAGGCTGAGCGCCCGCACGCTCGTTTCACGGGTTGAATTAGGCATACGGAGTTCATTCC
CAGTGTAAGATTAGACCGGACCGAGGGTTACGAATGCACATGCTGGGCTTGGGCATGTGCTGGTG
CCGTATTTTTTTTCACCTGGGGTACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCGAT
GATTGGGGGGCGGGG
Done.