genome.fa.s299.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168124.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_368, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30656

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255--518	143	1.9	142	80	4	316	38	7	10	43	1.66
1310--1361	13	4.0	13	78	7	52	42	0	1	55	1.10
1600--1661	32	1.9	32	83	6	81	48	0	1	50	1.10
1756--1794	21	1.9	20	89	5	60	51	5	2	41	1.38
1778--1856	35	2.3	35	85	10	103	51	2	0	45	1.14
2414--2453	21	1.9	21	85	10	55	47	0	0	52	1.00
2596--2665	31	2.2	30	79	18	72	42	0	4	52	1.20
3157--3208	15	3.4	16	84	12	65	46	1	1	50	1.23
3551--3590	20	2.1	19	90	4	62	47	0	0	52	1.00
4108--4155	19	2.8	16	80	20	60	52	4	0	43	1.20
4232--4310	27	2.7	29	75	11	72	48	2	1	48	1.23
4402--4451	21	2.4	21	82	0	55	46	4	0	50	1.20
4436--4494	24	2.4	25	83	8	68	45	0	3	50	1.18
4717--4761	17	2.7	17	83	16	51	46	2	2	48	1.26
4941--4984	20	2.3	20	84	7	56	36	6	2	54	1.40
5825--6138	171	1.8	171	82	4	409	40	7	10	41	1.68
6243--6328	33	2.6	32	77	18	88	48	2	2	46	1.27
6385--6434	8	6.5	8	75	25	54	50	2	0	48	1.12
6512--6569	26	2.2	25	84	6	71	50	0	1	48	1.11
6549--6623	12	6.1	12	81	9	89	45	0	6	48	1.29
6528--6620	37	2.5	39	80	16	101	46	0	5	48	1.25
6569--6606	16	2.4	16	86	4	51	44	0	7	47	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6549--6610	25	2.4	27	86	10	94	45	0	6	48	1.28
6629--6758	28	4.7	27	69	16	81	48	0	0	50	1.11
6724--6768	17	2.9	16	75	25	51	55	0	0	44	0.99
7152--7194	14	2.9	15	81	18	54	44	0	0	55	0.99
7152--7194	11	4.2	10	82	14	52	44	0	0	55	0.99
7181--7262	31	2.7	32	74	11	82	48	1	1	48	1.17
7349--7580	117	2.0	118	97	0	439	39	4	8	47	1.55
7648--7682	6	5.7	6	86	6	52	48	0	0	51	1.00
7644--7686	19	2.3	20	80	15	56	51	0	0	48	1.00
7789--7829	22	1.9	21	90	5	64	56	2	2	39	1.26
7786--7838	22	2.4	21	82	14	63	56	1	1	39	1.21
8105--8545	164	2.7	165	78	9	407	38	10	7	43	1.68
8230--8556	167	2.0	168	81	5	394	40	11	6	42	1.65
8475--8733	139	1.9	137	82	9	330	44	10	8	37	1.69
8612--9808	181	6.6	179	77	8	999	40	9	8	40	1.70
8633--9808	537	2.2	542	79	5	1242	40	9	8	40	1.69
11190--11256	27	2.5	25	76	9	62	46	1	2	49	1.26
11321--11358	18	2.1	18	85	9	51	57	2	2	36	1.26
12284--12339	17	3.2	19	78	19	59	50	1	0	48	1.11
12459--12518	20	2.9	20	80	16	61	43	3	0	53	1.17
12472--12521	27	1.9	25	88	8	73	48	2	0	50	1.12
12471--12544	4	17.5	4	74	22	55	48	2	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12470--12546	22	3.6	21	81	16	72	48	2	0	49	1.15
12549--12589	21	2.0	21	90	0	64	63	0	2	34	1.08
14111--14167	19	3.2	19	74	16	59	49	0	3	47	1.18
15513--15594	17	4.6	17	71	24	53	48	2	1	47	1.22
15986--16052	23	2.8	24	77	8	57	52	0	4	43	1.21
16066--16117	27	1.9	27	84	7	70	46	0	0	53	1.00
16064--16110	23	2.0	23	83	0	58	48	0	0	51	1.00
16261--16351	23	4.0	23	77	15	91	46	0	2	51	1.13
16277--16327	16	3.1	16	75	24	52	41	0	1	56	1.10
16226--16328	19	5.5	19	71	24	76	45	0	0	52	1.13
16439--16924	180	2.7	180	78	2	474	42	10	7	39	1.68
16946--17033	24	3.6	24	72	16	65	48	3	2	45	1.31
16970--17103	59	2.3	58	79	13	127	46	4	2	47	1.35
17727--17852	20	5.8	21	74	15	98	43	0	2	53	1.13
17727--17851	11	10.8	12	67	23	63	44	0	2	53	1.13
17753--17858	51	2.1	51	84	8	135	43	0	2	53	1.15
17758--17887	51	2.6	48	79	15	124	43	0	2	53	1.18
18545--18575	15	2.0	16	93	6	55	45	3	6	45	1.45
18587--18621	16	2.3	15	90	5	52	37	5	2	54	1.39
19257--19303	21	2.2	21	84	0	58	36	0	4	59	1.17
19556--19595	21	1.9	21	85	10	55	42	2	5	50	1.37
20817--20869	25	2.0	28	85	10	76	49	0	5	45	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21572--21603	10	3.1	11	86	13	50	50	0	0	50	1.00
21919--21951	13	2.4	14	90	10	50	42	6	0	51	1.26
22133--22244	52	2.1	56	79	17	132	49	2	0	47	1.22
22207--22277	21	3.5	21	70	30	57	50	2	2	43	1.31
22276--22313	17	2.2	18	85	4	51	47	0	5	47	1.24
22294--22359	27	2.5	28	73	11	68	48	3	4	43	1.38
23036--23077	20	2.1	20	86	0	57	54	2	2	40	1.26
23118--23167	25	2.0	25	84	7	66	54	6	2	38	1.37
23312--23354	15	2.8	16	86	6	54	55	0	0	44	0.99
23380--23443	23	2.9	22	77	11	69	46	1	0	51	1.10
23445--23491	24	2.0	24	87	8	69	48	6	0	44	1.28
23983--24021	21	1.9	20	89	5	60	56	0	2	41	1.13
25671--26168	180	2.8	179	80	2	514	41	9	8	39	1.69
27540--27600	32	1.9	32	83	12	81	50	4	0	44	1.23
27549--27634	29	3.1	29	75	20	85	51	4	0	44	1.22
27841--27876	18	1.9	19	88	5	56	55	2	2	38	1.29
28583--28625	22	2.0	21	86	4	59	55	2	2	39	1.25
28613--28658	21	2.2	21	84	0	56	58	2	2	36	1.22
28588--28658	18	3.7	18	75	12	61	56	1	2	39	1.23
29307--29374	16	4.1	16	71	17	57	45	1	1	51	1.19
29377--29418	22	2.0	20	82	17	50	54	0	4	40	1.21
29483--29550	23	2.9	23	72	10	57	58	4	2	33	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30458--30491	16	2.1	16	88	0	50	52	2	0	44	1.16

Tables:   1

The End!