Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168126.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_37, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 424845
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.38
Warning! 4000 characters in sequence are not A, C, G, or T
File 2 of 8
Found at i:55760 original size:352 final size:352
Alignment explanation
Indices: 54826--55820 Score: 928
Period size: 352 Copynumber: 2.8 Consensus size: 352
54816 ATATTTGTTT
* * * ** * * *
54826 AAATAGTCATAACTATTTGAACTGGTTTGA-AAATAGCTTTA-GTTTCTAAATAT-CTTACTTAT
1 AAATAGACATAACTATTTGAACTGGTTCGACAAACATATTTATTTTTTTAAAT-TCCTTACCTAT
* * * * * * *
54888 TAATTTTTGAAATATTAGTAAAATAGTATTATTTTATTTTGTATAAGTTTTTATGAACTGAAACA
65 TAATTTTAG-AATATTAATAAATTAGTATTATTTTA-TTCGAATAAGCTTGTATGAA-TGAAACA
* *
54953 ATTGTTTTATTACAAAATAAAA-AGTCATAATGACTTT-AAATAAAAAATTGTTCAAATAGTCA-
127 ATTGTTTTATGACAAAA-AAAAGA-TCATAATGA-TTTAAAATAAATAATTGTTCAAATAGTCAT
* *
55015 AATCTATTTGAAATTGTTTAGTAAACATATTTATATTTTTAAATCTCTTACTCATTAATTTCTCA
189 AA-CTATTTGAACTTGTTTAGTAAACAGATTTA-ATTTTTAAATCT-TT--T-ATTAATTTCTCA
* * *
55080 AATGTTAATAAATTAGTATTATTTTATTTTAAATAAGCTTATATGAATTGAAATAATTGTTTATG
248 AATATTAATAAATCAGTATTATTTTATTTTAAACAA-CTTATATGAATTGAAATAATTGTTTATG
* * *
55145 ACTAAATAAAGGTTAGAATGATTTAAAATAGATAACTATTC
312 ACTAAAAAAAGGTCAGAACGATTTAAAATAGATAACTATTC
* * * * *
55186 TAATAGTCTTAACTATTTGAACTGGTTCGGCAAACATATTTATTTTTTTAAATTCCTTACTTATT
1 AAATAGACATAACTATTTGAACTGGTTCGACAAACATATTTATTTTTTTAAATTCCTTACCTATT
* * * *
55251 AATTTTTGGAATATTATTAAATTAGTATTATTTTAATTCGAATAAGCATGTATGGAAAGAAACAA
66 AA-TTTTAGAATATTAATAAATTAGTATTATTTT-ATTCGAATAAGCTTGTAT-GAATGAAACAA
* * * * *
55316 TTTTTTTATGACAAAATAAAGATCATAATGATTTAAGACAGATAATTGTTCAAATAGTCATAACT
128 TTGTTTTATGACAAAAAAAAGATCATAATGATTTAAAATAAATAATTGTTCAAATAGTCATAACT
* * * *
55381 AATTGAACTAT-TTTTGTAAAGAGATTTAGTTTTTAAATCTTTTATTAATTT-TCAAAATATTAA
193 ATTTGAACT-TGTTTAGTAAACAGATTTAATTTTTAAATCTTTTATTAATTTCTC-AAATATTAA
* ** * *
55444 TAGATCAGTATTATTTTATTTT-GCCAA-TT-T-TGCA-TGAAGA-GATTGTTTTATGACTAAAC
256 TAAATCAGTATTATTTTATTTTAAACAACTTATATGAATTGAA-ATAATTG-TTTATGACTAAA-
* * * *
55503 AAAAGGTCATAACGATTTCAAATAGATAATTGTTC
318 AAAAGGTCAGAACGATTTAAAATAGATAACTATTC
* * * * *
55538 AAATGGACATGATTATTTGAACTTGTTCGATAAACATATTTATTTTTTT-AATCTCC-TACCTAT
1 AAATAGACATAACTATTTGAACTGGTTCGACAAACATATTTATTTTTTTAAAT-TCCTTACCTAT
*
55601 TAATTTTCAGAATATTAATAAATTAGTATTATTTTATTCCGAATAAACTTGTATGAATTGAAACA
65 TAATTTT-AGAATATTAATAAATTAGTATTATTTTATT-CGAATAAGCTTGTATGAA-TGAAACA
* * * *
55666 ATTGTTTTATGATAAAACAAAAGATCATAACT-ATTTAAAATAAATAATTGCTCAAACATTCATA
127 ATTGTTTTATGACAAAA-AAAAGATCATAA-TGATTTAAAATAAATAATTGTTCAAATAGTCATA
** * * * * **
55730 ACTATTTGAACTTGCATGGTAAACAGATTTATTTTTTAACTCTTTTACTTATCAATTTTTGGAAT
190 ACTATTTGAACTTGTTTAGTAAACAGATTTAATTTTTAAATCTTTTA--T-T-AATTTCTCAAAT
*
55795 ATTAATAAA-CTAGTAATATTTTATTT
251 ATTAATAAATC-AGTATTATTTTATTT
55821 CAAATATGCT
Statistics
Matches: 527, Mismatches: 81, Indels: 58
0.79 0.12 0.09
Matches are distributed among these distances:
350 18 0.03
351 88 0.17
352 147 0.28
353 3 0.01
354 1 0.00
355 6 0.01
356 66 0.13
357 2 0.00
359 2 0.00
360 40 0.08
361 65 0.12
362 80 0.15
363 9 0.02
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.43
Consensus pattern (352 bp):
AAATAGACATAACTATTTGAACTGGTTCGACAAACATATTTATTTTTTTAAATTCCTTACCTATT
AATTTTAGAATATTAATAAATTAGTATTATTTTATTCGAATAAGCTTGTATGAATGAAACAATTG
TTTTATGACAAAAAAAAGATCATAATGATTTAAAATAAATAATTGTTCAAATAGTCATAACTATT
TGAACTTGTTTAGTAAACAGATTTAATTTTTAAATCTTTTATTAATTTCTCAAATATTAATAAAT
CAGTATTATTTTATTTTAAACAACTTATATGAATTGAAATAATTGTTTATGACTAAAAAAAGGTC
AGAACGATTTAAAATAGATAACTATTC
Found at i:55877 original size:181 final size:181
Alignment explanation
Indices: 55499--55882 Score: 430
Period size: 181 Copynumber: 2.1 Consensus size: 181
55489 TTTTATGACT
* * * * ** * * *
55499 AAACAAAAGGTCATAACGATTTCAAATAGATAATTGTTCAAATGGACATGATTATTTGAACTTGT
1 AAACAAAAGGTCATAACTATTTAAAATAAATAATTGCTCAAACAGACATAACTATTTGAACTTGA
* * *
55564 TCGATAAACATATTTATTTTTTTAATCTCCTACCTATTAATTTTCAGAATATTAATAAATTAGTA
66 TCGATAAACAGATTTATTTTTTTAATCTCCTACCTATCAATTTTCAGAATATTAATAAACTAGTA
* * * ** * *
55629 TTATTTTATTCCGAATAAACTTGTATGAATTGAAACAATTGTTTTATGATA
131 ATATTTTATTCCAAATAAACTTGCATGAACAGAAACAATTGGTTTATAATA
* **
55680 AAACAAAAGATCATAACTATTTAAAATAAATAATTGCTCAAACATTCATAACTATTTGAACTTGC
1 AAACAAAAGGTCATAACTATTTAAAATAAATAATTGCTCAAACAGACATAACTATTTGAACTTG-
* ** * **
55745 AT-GGTAAACAGATTTA-TTTTTTAACTCTTTTACTTATCAATTTTTGGAATATTAATAAACTAG
65 ATCGATAAACAGATTTATTTTTTTAA-TCTCCTACCTATCAATTTTCAGAATATTAATAAACTAG
* ** * *
55808 TAATATTTTATTTCAAATATGCTTGCATGAACAGAAACATTTGGTTTATAATG
129 TAATATTTTATTCCAAATAAACTTGCATGAACAGAAACAATTGGTTTATAATA
*
55861 AAACTAAAGGTCATAACTATTT
1 AAACAAAAGGTCATAACTATTT
55883 GAACATGTTC
Statistics
Matches: 166, Mismatches: 35, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
180 8 0.05
181 157 0.95
182 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40
Consensus pattern (181 bp):
AAACAAAAGGTCATAACTATTTAAAATAAATAATTGCTCAAACAGACATAACTATTTGAACTTGA
TCGATAAACAGATTTATTTTTTTAATCTCCTACCTATCAATTTTCAGAATATTAATAAACTAGTA
ATATTTTATTCCAAATAAACTTGCATGAACAGAAACAATTGGTTTATAATA
Found at i:55983 original size:145 final size:145
Alignment explanation
Indices: 55750--56029 Score: 343
Period size: 145 Copynumber: 1.9 Consensus size: 145
55740 CTTGCATGGT
* * * *
55750 AAACAGATTTATTTTTTAACTCTTTTACTTATCAATTTTTGGAATATTAATAAACTAGTAATATT
1 AAACAAATTAATTTTTTAAATCTTTTACTTATCAATTTTTGAAATATTAATAAACTAGTAATATT
** * ** *
55815 TTATTTCAAATATGCTTGCATGAACAGAAAC-ATTTGGTTTATAATGAAACTAAAGGTCATAACT
66 TTATTTCAAATAAACTTGCATGAACAGAAACGA-TTGGTTTATAA-CAAAAAAAAGGTCATAACA
55879 ATTTGAACATGTTCAAA
129 ATTTGAACATGTTCAAA
* * *
55896 AAACAAATTAATTTTTTAAAT-TTTTACTTATTAATTTTTGAAATATTAATAAATTTA-TATTAT
1 AAACAAATTAATTTTTTAAATCTTTTACTTATCAATTTTTGAAATATTAATAAA-CTAGTAATAT
* * * *
55959 TTTA-TTCAAAATAAACTTGTATGAACAGGAACGATTGTTTTATGACAAAAAAAAGGTCATAACA
65 TTTATTTC-AAATAAACTTGCATGAACAGAAACGATTGGTTTATAACAAAAAAAAGGTCATAACA
56023 ATTTGAA
129 ATTTGAA
56030 AACAGATAAT
Statistics
Matches: 114, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
144 25 0.22
145 68 0.60
146 21 0.18
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (145 bp):
AAACAAATTAATTTTTTAAATCTTTTACTTATCAATTTTTGAAATATTAATAAACTAGTAATATT
TTATTTCAAATAAACTTGCATGAACAGAAACGATTGGTTTATAACAAAAAAAAGGTCATAACAAT
TTGAACATGTTCAAA
Found at i:56179 original size:181 final size:179
Alignment explanation
Indices: 55870--57234 Score: 1072
Period size: 181 Copynumber: 7.6 Consensus size: 179
55860 GAAACTAAAG
* * * * *
55870 GTCATAACTATTTGAACATGTTCAAAAAACAAATTAATTTTTTAAAT-TTTTACTTATTAATTTT
1 GTCATAACTATTTGAACTTGTTCAGAAAAC-AGTTTATTTTTTAAATCTCTTACTTATTAATTTT
* * ** *
55934 TGAAATATTAATAAATTTA-TATTATTTTATTCAAAATAAACTTGTATGAACAGGAACGATTGTT
65 T-AAATATTAATAAA-TTAGTATTATTTTATTCCAAATAAGCTTGTATGAACAAAAACAATTGTT
*
55998 TTATGACAAAA-AAAAGGTCATAACAATTTGAAAACAGATAATTGTTCAAATA
128 TTATGACAAAACAAAAGGTCATAACGATTTGAAAA-AGATAATTGTTCAAATA
* * *
56050 GTCATAACTATTTGAACTTGTTCAGAAAATAGTTTCATTTTTTAAATCTCTTACTCATTATTTTT
1 GTCATAACTATTTGAACTTGTTCAGAAAACAGTTT-ATTTTTTAAATCTCTTACTTATTAATTTT
* ** * * *** *
56115 TGGAATATTAATAAATTAGTATTATTTTATTTTAAATAAGCCTATATGAATTTATACAATTGTTT
65 T-AAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAACAAAAACAATTGTTT
* * * * **
56180 TAGGACAAAA-AAAAGGTCAAAATGATTTTAAATAA-ATAATTACTCAAATA
129 TATGACAAAACAAAAGGTCATAACGATTTGAAA-AAGATAATTGTTCAAATA
* * * * * *
56230 GTTATGACTATTTGAACTTGTTCGGTAAATATA-TTTATTTTTAAAATCTTTTACTTATTAATTA
1 GTCATAACTATTTGAACTTGTTCAG-AAA-ACAGTTTATTTTTTAAATCTCTTACTTATTAATT-
* * * * * * *
56294 TTGAAATATTAA-AATTTTAATATTATTTTAATCCAAATAAGCTTGTAAGGAGAAAAACAATTGT
63 TTTAAATATTAATAA-ATTAGTATTATTTTATTCCAAATAAGCTTGTATGAACAAAAACAATTGT
* * *
56358 TTTATGATAAAACAAAATGTCATAAC-AGTTTGAAATAA-ATAATTGTTCAAACA
127 TTTATGACAAAACAAAAGGTCATAACGA-TTTGAAA-AAGATAATTGTTCAAATA
* * * ** * * * *
56411 GTTATGACTATTTGAACTTATTTGGTAAACAAATTTATTTTTTAAATCTTTTACTTATTAAATGT
1 GTCATAACTATTTGAACTTGTTCAGAAAAC-AGTTTATTTTTTAAATCTCTTACTTATT-AATTT
* * * ** * ***
56476 CTAAATATTAATAAATTTGTATAATTTTATTTGAAATAAGTTTGTATGTGTAGAAAA-AATTGTT
64 TTAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAACA-AAAACAATTGTT
* * * * *
56540 TTATGACAAAATAAAAAAGGTCATAATGATTTGAAATAGATAATTATTTAAATA
128 TTATGAC-AAA-ACAAAAGGTCATAACGATTTGAAAAAGATAATTGTTCAAATA
* * * * *
56594 GTCATAACTATTTGAACTTGTTC-GAAAAATAGTTTCATTTTTTAAATCTCGTGCTCATT-GTTT
1 GTCATAACTATTTGAACTTGTTCAG-AAAACAGTTT-ATTTTTTAAATCTCTTACTTATTAATTT
* * ** * * *
56657 TAATAATATTAATAAATTAG-ATTTATGTTATTTTAAATAAGCTTTTACGAACAAAAACAATTGC
64 TTA-AATATTAATAAATTAGTA-TTATTTTATTCCAAATAAGCTTGTATGAACAAAAACAATTGT
* * * * *
56721 TTTATGATAAAACAAAAGGTCATAACTATTTGAAATAGATAATTGCTCAAACA
127 TTTATGACAAAACAAAAGGTCATAACGATTTGAAAAAGATAATTGTTCAAATA
* * ** * * *
56774 GTCATAACTATTTGCAC-TGGTCAGGTCAGCAGATTCATTTTTTAAATC-CATTACTTATAAATT
1 GTCATAACTATTTGAACTTGTTCA-GAAAACAG-TTTATTTTTTAAATCTC-TTACTTATTAATT
* * * * * *
56837 TTCAAAATATTAATACATTAGCATTACTTTATTCCGAATAAGAC-TGTATGAACAAAAACAATTA
63 TT-TAAATATTAATAAATTAGTATTATTTTATTCCAAATAAG-CTTGTATGAACAAAAACAATTG
* * *
56901 TTTTATGACAAAACAAATGGTCATAATGATTTGGAATAAAG--AATTGTT-TAA-A
126 TTTTATGACAAAACAAAAGGTCATAACGATTT-GAA-AAAGATAATTGTTCAAATA
** * * *
56953 -T-A-AACTAACTGAACTGGTTTA-ATAAACAGATTTATTTTTTAAATCTCTTA-TTCTTAATTT
1 GTCATAACTATTTGAACTTGTTCAGA-AAACAG-TTTATTTTTTAAATCTCTTACTTATTAATTT
* * ** * * * * *
57013 TTAAAATATGAATAGATTAACATTATTTTATTCCAAACAAACTTATATGAACAAAAACATTTATT
64 TT-AAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAACAAAAACAATTGTT
* * * *
57078 TTATGACAAAAGAAAAGGTCATAACGATTTGAAATAGATAATTATTTAAATA
128 TTATGACAAAACAAAAGGTCATAACGATTTGAAAAAGATAATTGTTCAAATA
* * * * ** * *
57130 ATCATAATTATTTGAACTGGTT-TGACAAACAAAATTATTTTTTAAATCCCATACTTATTAATTT
1 GTCATAACTATTTGAACTTGTTCAGA-AAAC-AGTTTATTTTTTAAATCTCTTACTTATTAA-TT
* *
57194 TTTAAATATTAATAAATTTGTTTTATTTTATTCCAAATAAG
63 TTTAAATATTAATAAATTAGTATTATTTTATTCCAAATAAG
57235 TTACTAAGAA
Statistics
Matches: 940, Mismatches: 195, Indels: 99
0.76 0.16 0.08
Matches are distributed among these distances:
173 3 0.00
174 4 0.00
175 93 0.10
176 33 0.04
177 6 0.01
178 2 0.00
179 13 0.01
180 266 0.28
181 361 0.38
182 83 0.09
183 75 0.08
184 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (179 bp):
GTCATAACTATTTGAACTTGTTCAGAAAACAGTTTATTTTTTAAATCTCTTACTTATTAATTTTT
AAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAACAAAAACAATTGTTTTA
TGACAAAACAAAAGGTCATAACGATTTGAAAAAGATAATTGTTCAAATA
Found at i:56588 original size:17 final size:18
Alignment explanation
Indices: 56561--56609 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
56551 TAAAAAAGGT
*
56561 CATAATGATTTGAAATAG
1 CATAATTATTTGAAATAG
56579 -ATAATTATTT-AAATAG
1 CATAATTATTTGAAATAG
*
56595 TCATAACTATTTGAA
1 -CATAATTATTTGAA
56610 CTTGTTCGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 6 0.23
17 9 0.35
18 9 0.35
19 2 0.08
ACGTcount: A:0.45, C:0.06, G:0.10, T:0.39
Consensus pattern (18 bp):
CATAATTATTTGAAATAG
Found at i:56605 original size:18 final size:18
Alignment explanation
Indices: 56559--56609 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
56549 AATAAAAAAG
56559 GTCATAATGATTTGAAATA
1 GTCATAAT-ATTTGAAATA
56578 G--ATAATTATTT-AAATA
1 GTCATAA-TATTTGAAATA
56594 GTCATAACTATTTGAA
1 GTCATAA-TATTTGAA
56610 CTTGTTCGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
16 6 0.22
17 8 0.30
18 10 0.37
19 3 0.11
ACGTcount: A:0.43, C:0.06, G:0.12, T:0.39
Consensus pattern (18 bp):
GTCATAATATTTGAAATA
Found at i:56948 original size:544 final size:535
Alignment explanation
Indices: 55896--57147 Score: 1337
Period size: 544 Copynumber: 2.3 Consensus size: 535
55886 CATGTTCAAA
* *
55896 AAACAAATTAATTTTTTAAAT-TTTTACTTATTAATTTTTGAAATATTAATAAATTTATATTATT
1 AAACAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTAAAATATTAATAAATTTATATTATT
* * ** *
55960 TTATTCAAAATAAACTTGTATG-AACAGGAACGATTGTTTTATGAC-AAAAAAAAGGTCATAACA
66 TTATTCAAAATAAA-TTGTATGTGA-AGAAAAAATTGTTTTATGACAAAAAAAAAGGTCATAACG
* * *
56023 ATTTGAAAACAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAGAAAATAGTTTCAT
129 ATTTG-AAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCAGAAAATAGTTTCAT
* * *
56088 TTTTTAAATCTCTTACTCATTATTTTTTGGAATATTAATAAATTAGTATTATTTTATTTTAAATA
193 TTTTTAAATCTCGTACTCATTATTTTAT-GAATATTAATAAATTAGTATTATGTTATTTTAAATA
* *** * * *
56153 AGCCTATATGAATTTATACAATTGTTTTAGGACAAAAAAAAGGTCAAAATGATTTTAAATAAATA
257 AGCCTATACGAACAAAAACAATTGCTTTAGGACAAAAAAAAGGTCAAAATGATTTGAAATAAATA
* * * * * * * **
56218 ATTACTCAAATAGTTATGACTATTTGAACTTGTTCGGTAAATATATTTATTTTTAAAATCTTTTA
322 ATTACTCAAACAGTCATAACTATTTGAACTTGGTCGGTAAACAGATTCATTTTTAAAATCCATTA
* * ** * * * *
56283 CTTATTAATTATTGAAATATTAAAATTTTAATATTATTTTAATCCAAATAAGCTTGTAAGGAGAA
387 CTTATAAATTATTAAAATATTAAAACATTAACATTACTTTAATCCAAATAAGCTTGTAAGAACAA
* * *
56348 AAACAATTGTTTTATGATAAAACAAAATGTCATAACAGTTTGAAATAAATAATTGTTCAAACAGT
452 AAACAATTATTTTATGACAAAACAAAATGTCATAACAGTTTGAAATAAAGAATTGTT-AAA-A--
* ** * **
56413 TATGACTATTTGAACTTATTTGGT
513 TA-AACTAACTGAACTGATTTAAT
* * * *
56437 AAACAAATTTATTTTTTAAATCTTTTACTTATTAAATGTCT-AAATATTAATAAATTTGTATAAT
1 AAACAAATTTATTTTTTAAATCTTTTACTTATT-AATTTTTAAAATATTAATAAATTTATATTAT
** * *
56501 TTTATTTGAAATAAGTTTGTATGTGTAGAAAAAATTGTTTTATGACAAAATAAAAAAGGTCATAA
65 TTTATTCAAAATAA-ATTGTATGTGAAGAAAAAATTGTTTTATGAC-AAA-AAAAAAGGTCATAA
*
56566 TGATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTC-GAAAAATAGTTTC
127 CGATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCAG-AAAATAGTTTC
* *
56630 ATTTTTTAAATCTCGTGCTCATTGTTTTAAT-AATATTAATAAATTAG-ATTTATGTTATTTTAA
191 ATTTTTTAAATCTCGTACTCATTATTTT-ATGAATATTAATAAATTAGTA-TTATGTTATTTTAA
* * * * *
56693 ATAAGCTTTTACGAACAAAAACAATTGCTTTATGATAAAACAAAAGGTCATAACT-ATTTGAAAT
254 ATAAGCCTATACGAACAAAAACAATTGCTTTAGGACAAAA-AAAAGGTCA-AAATGATTTGAAAT
* * * * * *
56757 AGATAATTGCTCAAACAGTCATAACTATTTGCAC-TGGTCAGGTCAGCAGATTCATTTTTTAAAT
317 AAATAATTACTCAAACAGTCATAACTATTTGAACTTGGTC-GGTAAACAGATTCATTTTTAAAAT
* * * *
56821 CCATTACTTATAAATT-TTCAAAATATTAATACATTAGCATTACTTTATTCCGAATAAGAC-TGT
381 CCATTACTTATAAATTATT-AAAATATTAAAACATTAACATTACTTTAATCCAAATAAG-CTTGT
* * *
56884 ATGAACAAAAACAATTATTTTATGACAAAAC-AAATGGTCATAA-TGATTTGGAATAAAGAATTG
444 AAGAACAAAAACAATTATTTTATGACAAAACAAAAT-GTCATAACAG-TTTGAAATAAAGAATTG
* *
56947 TTTAAATAAACTAACTGAACTGGTTTAAT
507 TTAAAATAAACTAACTGAACTGATTTAAT
* * * * * * *
56976 AAACAGATTTATTTTTTAAATCTCTTA-TTCTTAATTTTTAAAATATGAATAGATTAACATTATT
1 AAACAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTAAAATATTAATAAATTTATATTATT
* * * * * * *
57040 TTATTCCAAACAAACT-TATATGAACAAAAACATTTATTTTATGACAAAAGAAAAGGTCATAACG
66 TTATTCAAAATAAATTGTATGTGAAGAAAAA-A-TTGTTTTATGACAAAAAAAAAGGTCATAACG
* *
57104 ATTTGAAATAGATAATTATTTAAATAATCATAATTATTTGAACT
129 ATTTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACT
57148 GGTTTGACAA
Statistics
Matches: 591, Mismatches: 100, Indels: 45
0.80 0.14 0.06
Matches are distributed among these distances:
536 67 0.11
537 10 0.02
538 43 0.07
539 39 0.07
540 2 0.00
541 20 0.03
542 70 0.12
543 78 0.13
544 238 0.40
545 24 0.04
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (535 bp):
AAACAAATTTATTTTTTAAATCTTTTACTTATTAATTTTTAAAATATTAATAAATTTATATTATT
TTATTCAAAATAAATTGTATGTGAAGAAAAAATTGTTTTATGACAAAAAAAAAGGTCATAACGAT
TTGAAATAGATAATTATTTAAATAGTCATAACTATTTGAACTTGTTCAGAAAATAGTTTCATTTT
TTAAATCTCGTACTCATTATTTTATGAATATTAATAAATTAGTATTATGTTATTTTAAATAAGCC
TATACGAACAAAAACAATTGCTTTAGGACAAAAAAAAGGTCAAAATGATTTGAAATAAATAATTA
CTCAAACAGTCATAACTATTTGAACTTGGTCGGTAAACAGATTCATTTTTAAAATCCATTACTTA
TAAATTATTAAAATATTAAAACATTAACATTACTTTAATCCAAATAAGCTTGTAAGAACAAAAAC
AATTATTTTATGACAAAACAAAATGTCATAACAGTTTGAAATAAAGAATTGTTAAAATAAACTAA
CTGAACTGATTTAAT
Found at i:61097 original size:22 final size:21
Alignment explanation
Indices: 61009--61101 Score: 68
Period size: 22 Copynumber: 4.3 Consensus size: 21
60999 AGAATTTTAT
61009 TTATATTAAATTATAATTATAA
1 TTATA-TAAATTATAATTATAA
*
61031 -TAGT-T-AATTAT-TTTAATAA
1 TTA-TATAAATTATAATT-ATAA
* **
61050 TTAATACAAATTATTTTTATAAA
1 TT-ATATAAATTATAATTAT-AA
61073 TTATATAAATTATAATTATACA
1 TTATATAAATTATAATTATA-A
61095 TTATATA
1 TTATATA
61102 TTATATAATT
Statistics
Matches: 57, Mismatches: 5, Indels: 18
0.71 0.06 0.22
Matches are distributed among these distances:
18 2 0.04
19 10 0.18
20 3 0.05
21 4 0.07
22 31 0.54
23 7 0.12
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.49
Consensus pattern (21 bp):
TTATATAAATTATAATTATAA
Found at i:61192 original size:24 final size:23
Alignment explanation
Indices: 61165--61210 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
61155 AACTAATATT
* *
61165 TAATTACAAATATTTGATTATTTG
1 TAATAACAAATAATT-ATTATTTG
*
61189 TAATAATAAATAATTATTATTT
1 TAATAACAAATAATTATTATTT
61211 AAATTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.50
Consensus pattern (23 bp):
TAATAACAAATAATTATTATTTG
Found at i:62064 original size:21 final size:21
Alignment explanation
Indices: 62021--62077 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
62011 TTTAACCTTT
* *
62021 TAATATAAAATTATTATTAAA
1 TAATATATAATTATTAATAAA
62042 TAATATATAATTATTAAATAATA
1 TAATATATAATTATT-AATAA-A
62065 TAAT-TATAATTAT
1 TAATATATAATTAT
62078 AATTATATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
21 14 0.44
22 13 0.41
23 5 0.16
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
TAATATATAATTATTAATAAA
Found at i:62074 original size:6 final size:6
Alignment explanation
Indices: 62041--62197 Score: 50
Period size: 6 Copynumber: 26.7 Consensus size: 6
62031 TTATTATTAA
*
62041 ATAATAT ATAATT ATTAA-- ATAA-T ATAATT ATAATT ATAATT ATATTT
1 ATAAT-T ATAATT A-TAATT ATAATT ATAATT ATAATT ATAATT ATAATT
* * * * *
62088 TTGAA-C ACT-CTT ACTAATA ATATTT AT-A-T AT-ATT ATAATT ATAA-T
1 AT-AATT A-TAATT A-TAATT ATAATT ATAATT ATAATT ATAATT ATAATT
* * * * *
62133 ATAATT ATTAACT AT--TA ATAATT ATAATT ATTATA ATAATT CATTATCT
1 ATAATT A-TAATT ATAATT ATAATT ATAATT ATAATT ATAATT -ATAAT-T
62182 ATAAATT ATAA-T ATAA
1 AT-AATT ATAATT ATAA
62198 GAATATATAT
Statistics
Matches: 112, Mismatches: 22, Indels: 34
0.67 0.13 0.20
Matches are distributed among these distances:
4 9 0.08
5 18 0.16
6 56 0.50
7 26 0.23
8 3 0.03
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (6 bp):
ATAATT
Found at i:62383 original size:22 final size:21
Alignment explanation
Indices: 62358--62402 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
62348 ATACAAATAA
* *
62358 TTTAATTAAATAATATCATTAG
1 TTTAATTAAACAA-ATAATTAG
62380 TTTAATTAAACAAATAATTAG
1 TTTAATTAAACAAATAATTAG
62401 TT
1 TT
62403 CAAATAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.44
Consensus pattern (21 bp):
TTTAATTAAACAAATAATTAG
Found at i:63000 original size:13 final size:14
Alignment explanation
Indices: 62954--63002 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
62944 ATAAATTCTT
62954 ATTAATT-AT-TTA
1 ATTAATTAATATTA
*
62966 ATATAATAGAATATTA
1 AT-TAAT-TAATATTA
62982 ATTAATTAATATT-
1 ATTAATTAATATTA
62995 ATTAATTA
1 ATTAATTA
63003 TCTAAATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
12 2 0.06
13 12 0.39
14 6 0.19
15 6 0.19
16 5 0.16
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (14 bp):
ATTAATTAATATTA
Found at i:63160 original size:17 final size:17
Alignment explanation
Indices: 63066--63160 Score: 75
Period size: 17 Copynumber: 5.2 Consensus size: 17
63056 AATTAGTATT
*
63066 ATTATATAATTAAATTA
1 ATTATATAATTAAATAA
* *
63083 ATAATATAATTATATAA
1 ATTATATAATTAAATAA
63100 CATT-TATTATATTATAATAA
1 -ATTATA-TA-ATTA-AATAA
* *
63120 AATATTTAATTTATAATAA
1 ATTATATAA-TTA-AATAA
63139 TATTATATAATTAAATAA
1 -ATTATATAATTAAATAA
63157 ATTA
1 ATTA
63161 AATATATTAT
Statistics
Matches: 62, Mismatches: 9, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
17 20 0.32
18 10 0.16
19 20 0.32
20 12 0.19
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (17 bp):
ATTATATAATTAAATAA
Found at i:63171 original size:37 final size:36
Alignment explanation
Indices: 63065--63173 Score: 91
Period size: 37 Copynumber: 2.9 Consensus size: 36
63055 AAATTAGTAT
*
63065 TATTATATAATTAAATTAAT-AATATAATTAT-ATAA
1 TATTATATAATTAAATAAATAAATAT-ATTATAATAA
* * *
63100 CATT-TATTATATTATAATAAA-ATATTTAATTTATAATAA
1 TATTATA-TA-ATTA-AATAAATAAATAT-A-TTATAATAA
63139 TATTATATAATTAAATAAATTAAATATATTATAAT
1 TATTATATAATTAAATAAA-TAAATATATTATAAT
63174 GATAAACATT
Statistics
Matches: 58, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
34 2 0.03
35 5 0.09
36 4 0.07
37 23 0.40
38 9 0.16
39 13 0.22
40 2 0.03
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (36 bp):
TATTATATAATTAAATAAATAAATATATTATAATAA
Found at i:64190 original size:26 final size:25
Alignment explanation
Indices: 64148--64198 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
64138 ATAAAATGTT
64148 ATTAATTATTATATAATATATAATA
1 ATTAATTATTATATAATATATAATA
*
64173 ATTATATTA-TATATTAATTTATAATA
1 ATTA-ATTATTATA-TAATATATAATA
64199 TTTCAAAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (25 bp):
ATTAATTATTATATAATATATAATA
Found at i:64298 original size:27 final size:28
Alignment explanation
Indices: 64268--64326 Score: 70
Period size: 27 Copynumber: 2.1 Consensus size: 28
64258 ATTGATAAAT
64268 AATATGATT-ATTATTATA-ATAA-ATTAA
1 AATATGATTCA-TATTATATA-AATATTAA
*
64295 AATATTATTCATATTATATAAATATTAA
1 AATATGATTCATATTATATAAATATTAA
64323 AATA
1 AATA
64327 ATTGTTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
27 17 0.61
28 11 0.39
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (28 bp):
AATATGATTCATATTATATAAATATTAA
Found at i:64343 original size:28 final size:28
Alignment explanation
Indices: 64290--64343 Score: 65
Period size: 28 Copynumber: 1.9 Consensus size: 28
64280 ATTATAATAA
*
64290 ATTAAAATATTATTCATATTATATAAAT
1 ATTAAAATATTATTCAAATTATATAAAT
* *
64318 ATTAAAATAATTGTTTAAATTA-ATAA
1 ATTAAAAT-ATTATTCAAATTATATAA
64344 TTCACAAACC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
28 12 0.55
29 10 0.45
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (28 bp):
ATTAAAATATTATTCAAATTATATAAAT
Found at i:65106 original size:14 final size:16
Alignment explanation
Indices: 65087--65118 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
65077 ATCTTTTACT
65087 TAATA-TTA-TATAAA
1 TAATATTTATTATAAA
65101 TAATATTTATTATAAA
1 TAATATTTATTATAAA
65117 TA
1 TA
65119 GTAAACATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.31
15 3 0.19
16 8 0.50
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TAATATTTATTATAAA
Found at i:65667 original size:24 final size:24
Alignment explanation
Indices: 65602--65678 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
65592 TAATACTATA
*
65602 TAAATTA-AAATAAATT-ATATTT
1 TAAATTATAAATAATTTAATATTT
* * *
65624 T-AATTATTAAATTATCTAATCTTT
1 TAAATTA-TAAATAATTTAATATTT
65648 TAAATTATAAATAATTTAATATAATT
1 TAAATTATAAATAATTTAATAT--TT
65674 TAAAT
1 TAAAT
65679 AAAAATTAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
21 5 0.12
22 1 0.02
23 6 0.14
24 18 0.43
25 5 0.12
26 7 0.17
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (24 bp):
TAAATTATAAATAATTTAATATTT
Found at i:65693 original size:22 final size:23
Alignment explanation
Indices: 65654--65719 Score: 73
Period size: 23 Copynumber: 2.8 Consensus size: 23
65644 CTTTTAAATT
65654 ATAAATAATTTAAT-ATAATTTAA
1 ATAAATAA-TTAATAATAATTTAA
65677 ATAAA-AATTAATAATAATTTTAA
1 ATAAATAATTAATAATAA-TTTAA
* *
65700 ACAAATAAATAATTAATAAT
1 ATAAATAATTAA-TAATAAT
65720 AGATATTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
21 5 0.14
22 6 0.16
23 14 0.38
24 6 0.16
25 6 0.16
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (23 bp):
ATAAATAATTAATAATAATTTAA
Found at i:65733 original size:28 final size:26
Alignment explanation
Indices: 65674--65733 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 26
65664 TAATATAATT
65674 TAAATAAAAATTAATAATAATTTTAAA
1 TAAATAAAAATTAATAATAATTTT-AA
*
65701 CAAATAAATAATTAATAATAGATATTT-A
1 TAAATAAA-AATTAATAATA-AT-TTTAA
65729 TAAAT
1 TAAAT
65734 TTATAAGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
27 7 0.25
28 16 0.57
29 2 0.07
30 3 0.11
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (26 bp):
TAAATAAAAATTAATAATAATTTTAA
Found at i:65859 original size:26 final size:28
Alignment explanation
Indices: 65792--65859 Score: 69
Period size: 26 Copynumber: 2.6 Consensus size: 28
65782 AAATATAATC
65792 CAAATAATATT-TAATTATATAAATATT
1 CAAATAATATTATAATTATATAAATATT
65819 -AAAT-ATAATTA-AATTAT-T-AAT-TT
1 CAAATAAT-ATTATAATTATATAAATATT
65842 CAAATAATATTTATAATT
1 CAAATAATA-TTATAATT
65860 TAAACTTATA
Statistics
Matches: 35, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
23 2 0.06
24 8 0.23
25 8 0.23
26 17 0.49
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
CAAATAATATTATAATTATATAAATATT
Found at i:66475 original size:13 final size:13
Alignment explanation
Indices: 66411--66481 Score: 60
Period size: 13 Copynumber: 5.5 Consensus size: 13
66401 AATATTTATG
66411 TATTGTAATTATAA
1 TATT-TAATTATAA
66425 T-TTTAAATTAT-A
1 TATTT-AATTATAA
* *
66437 TAATTAA-TATAC
1 TATTTAATTATAA
*
66449 TATTATTATT-TAA
1 TATT-TAATTATAA
66462 TATTTAATTATAA
1 TATTTAATTATAA
66475 TATTTAA
1 TATTTAA
66482 ATATTAGAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 13
0.70 0.09 0.20
Matches are distributed among these distances:
11 3 0.07
12 12 0.27
13 28 0.62
14 2 0.04
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (13 bp):
TATTTAATTATAA
Found at i:66710 original size:13 final size:14
Alignment explanation
Indices: 66680--66712 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
66670 GAAATATTAT
66680 TAATATTATCTAATA
1 TAAT-TTATCTAATA
66695 TAATTTATCT-ATA
1 TAATTTATCTAATA
66708 TAATT
1 TAATT
66713 ATAAATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.44
14 6 0.33
15 4 0.22
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (14 bp):
TAATTTATCTAATA
Found at i:67209 original size:19 final size:19
Alignment explanation
Indices: 67163--67215 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
67153 TTAGATATTA
*
67163 AATATTATTAATAAGAAATT
1 AATATTATT-ATAATAAATT
67183 AATA-TATTATAATAAATT
1 AATATTATTATAATAAATT
**
67201 GTTATTATTATAATA
1 AATATTATTATAATA
67216 TTATTAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 11 0.38
19 14 0.48
20 4 0.14
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (19 bp):
AATATTATTATAATAAATT
Found at i:67966 original size:9 final size:9
Alignment explanation
Indices: 67952--68052 Score: 52
Period size: 9 Copynumber: 10.8 Consensus size: 9
67942 TTTAAAAATC
67952 TTATATTAA
1 TTATATTAA
67961 TTATATTATAA
1 TTATA-T-TAA
*
67972 ATATAATT-A
1 TTAT-ATTAA
*
67981 TTATTTTAA
1 TTATATTAA
67990 TTATATT-A
1 TTATATTAA
67998 -TATATTTAATA
1 TTATA-TT-A-A
68009 TTATATTAA
1 TTATATTAA
68018 TTGA-ATT-A
1 TT-ATATTAA
68026 TTA-ATATAA
1 TTATAT-TAA
68035 TTATAATTAA
1 TTAT-ATTAA
68045 TTTATATT
1 -TTATATT
68053 GTAAGCAATA
Statistics
Matches: 73, Mismatches: 4, Indels: 29
0.69 0.04 0.27
Matches are distributed among these distances:
7 7 0.10
8 9 0.12
9 26 0.36
10 10 0.14
11 16 0.22
12 5 0.07
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (9 bp):
TTATATTAA
Found at i:67970 original size:5 final size:5
Alignment explanation
Indices: 67952--68016 Score: 50
Period size: 5 Copynumber: 13.6 Consensus size: 5
67942 TTTAAAAATC
* * *
67952 TTATA TTA-A TTATA TTATA -AATA TAATTA TTATT TTA-A TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTA-TA TTATA TTATA TTATA TTATA
68000 -TAT- TTAATA TTATA TTA
1 TTATA TT-ATA TTATA TTA
68017 ATTGAATTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
4 14 0.29
5 29 0.59
6 6 0.12
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
TTATA
Found at i:67980 original size:17 final size:17
Alignment explanation
Indices: 67958--68000 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
67948 AATCTTATAT
67958 TAATTATATTATAAATA
1 TAATTATATTATAAATA
* *
67975 TAATTATTATTTTAATTA
1 TAATTA-TATTATAAATA
67993 T-ATTATAT
1 TAATTATAT
68001 ATTTAATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 3 0.13
17 10 0.43
18 10 0.43
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TAATTATATTATAAATA
Found at i:68005 original size:17 final size:17
Alignment explanation
Indices: 67952--68007 Score: 51
Period size: 17 Copynumber: 3.1 Consensus size: 17
67942 TTTAAAAATC
67952 TTATATTAATTATATTATAA
1 TTATATT-A-TATATT-TAA
*
67972 ATATAATTAT-TATTTTAA
1 TTAT-ATTATATA-TTTAA
67990 TTATATTATATATTTAA
1 TTATATTATATATTTAA
68007 T
1 T
68008 ATTATATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
17 11 0.35
18 10 0.32
19 3 0.10
20 4 0.13
21 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTATATTATATATTTAA
Found at i:68027 original size:12 final size:11
Alignment explanation
Indices: 67955--68046 Score: 50
Period size: 12 Copynumber: 8.1 Consensus size: 11
67945 AAAAATCTTA
67955 TATTAATTATAT
1 TATTAATTA-AT
*
67967 TATAAATATAAT
1 TATTAAT-TAAT
*
67979 TATTATTTTAAT
1 TATTA-ATTAAT
67991 TA-T-ATT-AT
1 TATTAATTAAT
*
67999 ATATTTAA-TATT
1 -TA-TTAATTAAT
68011 ATATTAATTGAAT
1 -TATTAATT-AAT
68024 TATTAATATAAT
1 TATTAAT-TAAT
68036 TA-TAATTAAT
1 TATTAATTAAT
68046 T
1 T
68047 TATATTGTAA
Statistics
Matches: 64, Mismatches: 6, Indels: 22
0.70 0.07 0.24
Matches are distributed among these distances:
8 2 0.03
9 4 0.06
10 5 0.08
11 11 0.17
12 36 0.56
13 6 0.09
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (11 bp):
TATTAATTAAT
Found at i:68082 original size:57 final size:58
Alignment explanation
Indices: 67952--68086 Score: 147
Period size: 57 Copynumber: 2.4 Consensus size: 58
67942 TTTAAAAATC
* * **
67952 TTATATTAATTAT-ATTATAAATATAATTATTATTTTAATTATATTATATATTTAATA
1 TTATATTAATTATAATTATTAATATAATTATTATATTAATTATATTATATATGCAATA
* *
68009 TTATATTAATT-GAATTATTAATATAATTA-TA-ATTAATTTATATTGTA-A-GCAATA
1 TTATATTAATTATAATTATTAATATAATTATTATATTAA-TTATATTATATATGCAATA
68063 GTTATATTAATTATAAATTATTAA
1 -TTATATTAATTAT-AATTATTAA
68087 CTTTATTCTA
Statistics
Matches: 66, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
54 4 0.06
55 16 0.24
56 11 0.17
57 35 0.53
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (58 bp):
TTATATTAATTATAATTATTAATATAATTATTATATTAATTATATTATATATGCAATA
Found at i:68558 original size:22 final size:22
Alignment explanation
Indices: 68533--68574 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
68523 ATTAATCAAT
*
68533 ATATTAATT-AATAATTTAAATA
1 ATATT-ATTAAATAAATTAAATA
68555 ATATTATTAAATAAATTAAA
1 ATATTATTAAATAAATTAAA
68575 ACTAATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
ATATTATTAAATAAATTAAATA
Found at i:68975 original size:13 final size:12
Alignment explanation
Indices: 68947--69015 Score: 56
Period size: 11 Copynumber: 5.7 Consensus size: 12
68937 AATTAATTAG
68947 AAATTAT-ATTT
1 AAATTATAATTT
*
68958 GAATTAATAATTT
1 AAATT-ATAATTT
68971 AAATTATAATTTTT
1 AAATTATAA--TTT
68985 ATAATTATAAATTT
1 A-AATTAT-AATTT
68999 -AA-TATAATTT
1 AAATTATAATTT
69009 -AATTATA
1 AAATTATA
69016 TTACTATTAA
Statistics
Matches: 49, Mismatches: 2, Indels: 14
0.75 0.03 0.22
Matches are distributed among these distances:
10 7 0.14
11 11 0.22
12 8 0.16
13 8 0.16
14 7 0.14
15 6 0.12
16 2 0.04
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (12 bp):
AAATTATAATTT
Found at i:68981 original size:6 final size:6
Alignment explanation
Indices: 68959--69059 Score: 58
Period size: 6 Copynumber: 17.5 Consensus size: 6
68949 ATTATATTTG
68959 AATTAAT AATT-T AAATTAT AATT-T --TTAT AATTAT AAATT-T AA-TAT
1 AATT-AT AATTAT -AATTAT AATTAT AATTAT AATTAT -AATTAT AATTAT
* * * *
69004 AATT-T AATTAT -ATTACT -ATTAAT AACTAT AAATAA AAATAT AATTAT
1 AATTAT AATTAT AATTA-T AATT-AT AATTAT AATTAT AATTAT AATTAT
69051 AATTAT AAT
1 AATTAT AAT
69060 ATTGTCATGA
Statistics
Matches: 77, Mismatches: 5, Indels: 25
0.72 0.05 0.23
Matches are distributed among these distances:
3 2 0.03
4 2 0.03
5 16 0.21
6 45 0.58
7 12 0.16
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (6 bp):
AATTAT
Found at i:69716 original size:44 final size:40
Alignment explanation
Indices: 69617--69717 Score: 105
Period size: 40 Copynumber: 2.4 Consensus size: 40
69607 ATATTATAAT
* * * *
69617 AAATTATTTACTATTTTAAATAATATATTGATAAACTATA
1 AAATTACTTATTATTATAAATAATATATTAATAAACTATA
*
69657 ATATTACTTATTATTATAAATTAATATATTAATATTAACATATA
1 AAATTACTTATTATTATAAA-TAATATATTAATA--AAC-TATA
69701 ACAATTA-TTATTATTAT
1 A-AATTACTTATTATTAT
69718 TATTATTATT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
40 16 0.32
41 12 0.24
43 3 0.06
44 15 0.30
45 4 0.08
ACGTcount: A:0.47, C:0.05, G:0.01, T:0.48
Consensus pattern (40 bp):
AAATTACTTATTATTATAAATAATATATTAATAAACTATA
Found at i:69740 original size:41 final size:44
Alignment explanation
Indices: 69618--69740 Score: 98
Period size: 41 Copynumber: 2.9 Consensus size: 44
69608 TATTATAATA
* * * * *
69618 AATTATTTACTATTTTAAA-TAATATATTGATA-AAC-TATAA-
1 AATTACTTATTATTATAAATTAATATATTAATAGTACATATAAC
* *
69658 TATTACTTATTATTATAAATTAATATATTAATATTAACATATAAC
1 AATTACTTATTATTATAAATTAATATATTAATAGT-ACATATAAC
* * *
69703 AATTA-TTATTATTAT-TATTATTATTTTAATAGT-CATAT
1 AATTACTTATTATTATAAATTAATATATTAATAGTACATAT
69741 CTATAAATAA
Statistics
Matches: 67, Mismatches: 11, Indels: 9
0.77 0.13 0.10
Matches are distributed among these distances:
40 15 0.22
41 17 0.25
43 16 0.24
44 15 0.22
45 4 0.06
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.50
Consensus pattern (44 bp):
AATTACTTATTATTATAAATTAATATATTAATAGTACATATAAC
Found at i:70320 original size:34 final size:36
Alignment explanation
Indices: 70282--70350 Score: 90
Period size: 34 Copynumber: 2.0 Consensus size: 36
70272 ACTTATTTCA
*
70282 ATTATACT-AATTGATTATTTAT-ATAA-TTATATTT
1 ATTATACTAAATTG-TTATTGATAATAATTTATATTT
*
70316 ATTATATTAAATTGTTATTGATAATAATTTATATT
1 ATTATACTAAATTGTTATTGATAATAATTTATATT
70351 AAATTATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 14 0.47
35 9 0.30
36 7 0.23
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.55
Consensus pattern (36 bp):
ATTATACTAAATTGTTATTGATAATAATTTATATTT
Found at i:70481 original size:40 final size:40
Alignment explanation
Indices: 70400--70482 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
70390 ACATGTCAGT
* *
70400 TAAATTTATAAATATAATTTAATTATTTTGTTAATATTTA
1 TAAATTTATAAATATAATTTAATAATTTTATTAATATTTA
* *
70440 TAAATTT-TATATATAATATTAATAATTTATATTTATA-TTA
1 TAAATTTATAAATATAAT-TTAATAATTT-TATTAATATTTA
70480 TAA
1 TAA
70483 TTAATATAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
39 9 0.24
40 22 0.59
41 6 0.16
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (40 bp):
TAAATTTATAAATATAATTTAATAATTTTATTAATATTTA
Found at i:70482 original size:18 final size:20
Alignment explanation
Indices: 70411--70503 Score: 65
Period size: 17 Copynumber: 4.8 Consensus size: 20
70401 AAATTTATAA
*
70411 ATATAAT-TTAATTATTT-T
1 ATATAATATTAATAATTTAT
* *
70429 GT-TAATATTTATAAATTTTAT
1 ATATAATATTAAT-AA-TTTAT
70450 ATATAATATTAATAATTTAT
1 ATATAATATTAATAATTTAT
*
70470 AT-TTATATT-ATAA-TTA-
1 ATATAATATTAATAATTTAT
*
70486 ATATAACATTAGATAATT
1 ATATAATATTA-ATAATT
70504 AAATATATAT
Statistics
Matches: 58, Mismatches: 8, Indels: 16
0.71 0.10 0.20
Matches are distributed among these distances:
16 2 0.03
17 12 0.21
18 9 0.16
19 11 0.19
20 11 0.19
21 4 0.07
22 9 0.16
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (20 bp):
ATATAATATTAATAATTTAT
Found at i:70948 original size:9 final size:9
Alignment explanation
Indices: 70934--70959 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
70924 ATGAAATATC
70934 AATATAATT
1 AATATAATT
70943 AATATAATT
1 AATATAATT
70952 AATATAAT
1 AATATAAT
70960 ATTATTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
AATATAATT
Found at i:71421 original size:27 final size:28
Alignment explanation
Indices: 71386--71440 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
71376 TAAATTAATA
71386 ATATAAT-AATATTAATTTATAT-ATATT
1 ATATAATAAATA-TAATTTATATAATATT
*
71413 ATATAATAAATATGATTTATATAATATT
1 ATATAATAAATATAATTTATATAATATT
71441 TAAGAACTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
27 16 0.64
28 9 0.36
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (28 bp):
ATATAATAAATATAATTTATATAATATT
Found at i:71599 original size:26 final size:25
Alignment explanation
Indices: 71545--71601 Score: 62
Period size: 26 Copynumber: 2.3 Consensus size: 25
71535 TATATACTAC
*
71545 TTATA-ATTTTTATTATAAATTAAT
1 TTATATATTATTATTATAAATTAAT
* * *
71569 ATATATATTATTATTAATATATTAGT
1 TTATATATTATTATT-ATAAATTAAT
71595 TTATATA
1 TTATATA
71602 AGTAAGTAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 4 0.15
25 8 0.31
26 14 0.54
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (25 bp):
TTATATATTATTATTATAAATTAAT
Found at i:71718 original size:9 final size:9
Alignment explanation
Indices: 71632--71746 Score: 53
Period size: 9 Copynumber: 12.4 Consensus size: 9
71622 TACTTTTTTG
*
71632 AATATTAGT
1 AATATTATT
71641 AATATTAATT
1 AATATT-ATT
*
71651 ATTATCTATT
1 AATAT-TATT
*
71661 TATATTATT
1 AATATTATT
71670 -ATAATTA-T
1 AAT-ATTATT
*
71678 AATTATT-TAC
1 AA-TATTAT-T
71688 AGATATTAATT
1 A-ATATT-ATT
*
71699 -ATATTAAT
1 AATATTATT
71707 AATATTATT
1 AATATTATT
71716 AAT-TTA-T
1 AATATTATT
*
71723 ATATAATATT
1 A-ATATTATT
71733 ATATATTATT
1 A-ATATTATT
71743 AATA
1 AATA
71747 ATTGTTATAT
Statistics
Matches: 82, Mismatches: 10, Indels: 28
0.68 0.08 0.23
Matches are distributed among these distances:
7 2 0.02
8 10 0.12
9 38 0.46
10 29 0.35
11 2 0.02
12 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (9 bp):
AATATTATT
Found at i:71730 original size:20 final size:21
Alignment explanation
Indices: 71691--71734 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
71681 TATTTACAGA
71691 TATTAATTATATTAATAATAT
1 TATTAATTATATTAATAATAT
71712 TATTAATT-TA-TATATAATAT
1 TATTAATTATATTA-ATAATAT
71732 TAT
1 TAT
71735 ATATTATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 2 0.09
20 12 0.55
21 8 0.36
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
TATTAATTATATTAATAATAT
Found at i:71749 original size:30 final size:31
Alignment explanation
Indices: 71699--71762 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 31
71689 GATATTAATT
*
71699 ATATTAATAATATTATTAA-T-TTATATATA
1 ATATTAATAATATTAATAATTGTTATATATA
*
71728 ATATTATATATTATTAATAATTGTTATATATA
1 ATATTA-ATAATATTAATAATTGTTATATATA
71760 ATA
1 ATA
71763 AAATATATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 6 0.20
30 11 0.37
31 1 0.03
32 12 0.40
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (31 bp):
ATATTAATAATATTAATAATTGTTATATATA
Found at i:71823 original size:18 final size:17
Alignment explanation
Indices: 71793--71826 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
71783 TATATCAGAT
*
71793 TATTAATTTGATTATAC
1 TATTAATTAGATTATAC
71810 TATTAAATTAGATTATA
1 TATT-AATTAGATTATA
71827 TTAATAAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (17 bp):
TATTAATTAGATTATAC
Found at i:71834 original size:18 final size:18
Alignment explanation
Indices: 71797--71835 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
71787 TCAGATTATT
* *
71797 AATTTGATTATACTATTA
1 AATTAGATTATACTAATA
*
71815 AATTAGATTATATTAATA
1 AATTAGATTATACTAATA
71833 AAT
1 AAT
71836 GGTTATTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (18 bp):
AATTAGATTATACTAATA
Found at i:72468 original size:29 final size:29
Alignment explanation
Indices: 72423--72478 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
72413 TAAATTATAG
72423 TATAATAATATTAATTTAT-TATATATTAT
1 TATAATAATATTAATTTATATA-ATATTAT
*
72452 TATAATAAGTA-TGATTTATATAATATT
1 TATAATAA-TATTAATTTATATAATATT
72479 TAAGACTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 20 0.83
30 4 0.17
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.52
Consensus pattern (29 bp):
TATAATAATATTAATTTATATAATATTAT
Found at i:72613 original size:17 final size:19
Alignment explanation
Indices: 72592--72629 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
72582 TTTATAATTT
72592 TTATTATAAATTAATATATA
1 TTATTAT-AATTAATATATA
*
72612 TTATTATTATTAATATAT
1 TTATTATAATTAATATAT
72630 TAGTTTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTATTATAATTAATATATA
Found at i:72733 original size:9 final size:9
Alignment explanation
Indices: 72718--72777 Score: 57
Period size: 9 Copynumber: 6.3 Consensus size: 9
72708 ATATCAATCA
72718 AATATTAAT
1 AATATTAAT
*
72727 TATATTAAT
1 AATATTAAT
*
72736 AATATTATT
1 AATATTAAT
*
72745 AATTTATATAT
1 AATAT-TA-AT
72756 AATATTATAT
1 AATATTA-AT
*
72766 ATTATTAAT
1 AATATTAAT
72775 AAT
1 AAT
72778 TGTTATATAT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
9 23 0.56
10 13 0.32
11 5 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
AATATTAAT
Found at i:72759 original size:20 final size:21
Alignment explanation
Indices: 72720--72763 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 21
72710 ATCAATCAAA
72720 TATTAATTATATTAATAATAT
1 TATTAATTATATTAATAATAT
72741 TATTAATT-TA-TATATAATAT
1 TATTAATTATATTA-ATAATAT
72761 TAT
1 TAT
72764 ATATTATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 2 0.09
20 12 0.55
21 8 0.36
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
TATTAATTATATTAATAATAT
Found at i:72778 original size:30 final size:31
Alignment explanation
Indices: 72728--72788 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
72718 AATATTAATT
*
72728 ATATTAATAATATTATTAA-T-TTATATATA
1 ATATTAATAATATTAATAATTGTTATATATA
*
72757 ATATTATATATTATTAATAATTGTTATATATA
1 ATATTA-ATAATATTAATAATTGTTATATATA
72789 TAACAAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 6 0.22
30 11 0.41
31 1 0.04
32 9 0.33
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (31 bp):
ATATTAATAATATTAATAATTGTTATATATA
Found at i:72789 original size:36 final size:38
Alignment explanation
Indices: 72718--72790 Score: 89
Period size: 36 Copynumber: 2.0 Consensus size: 38
72708 ATATCAATCA
*
72718 AATATTAATTATATTAATAATATTATTAATTTATATAT
1 AATATTAATTATATTAATAATATTATTAATATATATAT
* *
72756 AATATT-A-TATATTATTAATAATTGTT-ATATATATA
1 AATATTAATTATATTAATAAT-ATTATTAATATATATA
72791 ACAAATATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
36 19 0.61
37 6 0.19
38 6 0.19
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (38 bp):
AATATTAATTATATTAATAATATTATTAATATATATAT
Found at i:72948 original size:11 final size:11
Alignment explanation
Indices: 72932--72962 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
72922 TTATAAATTA
72932 TAATTAATATT
1 TAATTAATATT
*
72943 TAATTATTATT
1 TAATTAATATT
72954 TAATTAATA
1 TAATTAATA
72963 GTATATTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TAATTAATATT
Found at i:73612 original size:15 final size:15
Alignment explanation
Indices: 73592--73629 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
73582 TCACACACAG
*
73592 ATATAATTGTTAAGT
1 ATATAATTGTTAAAT
73607 ATATAATATGTTAAAT
1 ATATAAT-TGTTAAAT
73623 AT-TAATT
1 ATATAATT
73630 ATTTAATTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 11 0.52
16 9 0.43
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (15 bp):
ATATAATTGTTAAAT
Found at i:73819 original size:19 final size:19
Alignment explanation
Indices: 73795--73833 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
73785 TAATAATCAT
*
73795 TAATTAATAAT-TGTATTAA
1 TAATTAACAATAT-TATTAA
73814 TAATTAACAATATTATTAA
1 TAATTAACAATATTATTAA
73833 T
1 T
73834 GGCTATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TAATTAACAATATTATTAA
Found at i:74615 original size:21 final size:22
Alignment explanation
Indices: 74573--74635 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 22
74563 TTTATCATAA
*
74573 TATTAATA-ATAGTTAAATTATT
1 TATTAATATATAATTAAA-TATT
74595 TA-TAATATATAATTAAATATT
1 TATTAATATATAATTAAATATT
74616 TATTAAT-TATAATT-AATATT
1 TATTAATATATAATTAAATATT
74636 ACTAAATTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
20 6 0.16
21 18 0.47
22 14 0.37
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
TATTAATATATAATTAAATATT
Found at i:74625 original size:28 final size:31
Alignment explanation
Indices: 74589--74653 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
74579 TAATAGTTAA
* *
74589 ATTATTTATAA-T-ATATAATTAAA-TATTT
1 ATTAATTATAATTAATATAACTAAATTATTT
*
74617 ATTAATTATAATTAATATTACTAAATTATTT
1 ATTAATTATAATTAATATAACTAAATTATTT
74648 ATTAAT
1 ATTAAT
74654 AGTTATTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 10 0.32
29 1 0.03
30 9 0.29
31 11 0.35
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (31 bp):
ATTAATTATAATTAATATAACTAAATTATTT
Found at i:74643 original size:20 final size:21
Alignment explanation
Indices: 74585--74645 Score: 65
Period size: 21 Copynumber: 2.9 Consensus size: 21
74575 TTAATAATAG
74585 TTAAATTATTTAT-AATATATAA
1 TTAAA-TATTTATAAAT-TATAA
*
74607 TTAAATATTTATTAATTATAA
1 TTAAATATTTATAAATTATAA
74628 TT-AATA-TTACTAAATTAT
1 TTAAATATTTA-TAAATTAT
74646 TTATTAATAG
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
19 3 0.08
20 11 0.31
21 14 0.39
22 8 0.22
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
TTAAATATTTATAAATTATAA
Found at i:74691 original size:16 final size:15
Alignment explanation
Indices: 74616--74700 Score: 61
Period size: 15 Copynumber: 5.5 Consensus size: 15
74606 ATTAAATATT
*
74616 TATTAATTATAATTAA
1 TATTAA-TATTATTAA
*
74632 TATTACTAAATTATT--
1 TATTA--ATATTATTAA
74647 TATTAATAGTTATT-A
1 TATTAATA-TTATTAA
*
74662 TAGT-ATAGTTATTAA
1 TATTAATA-TTATTAA
74677 TATTTAATATTATTAA
1 TA-TTAATATTATTAA
74693 TATTAATA
1 TATTAATA
74701 ATTTATGATA
Statistics
Matches: 57, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
13 2 0.04
14 14 0.25
15 17 0.30
16 15 0.26
17 8 0.14
18 1 0.02
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.52
Consensus pattern (15 bp):
TATTAATATTATTAA
Found at i:74825 original size:28 final size:28
Alignment explanation
Indices: 74789--74852 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 28
74779 ATATATATAA
* *
74789 TATAATAATTATATAT-TATTATTTTATT
1 TATAATAATTATAAATAT-TTAATTTATT
*
74817 TATAGTAATTATAAATATTTAATTTATT
1 TATAATAATTATAAATATTTAATTTATT
74845 TATTAATA
1 TA-TAATA
74853 TTTGGTATAG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 25 0.83
29 5 0.17
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (28 bp):
TATAATAATTATAAATATTTAATTTATT
Found at i:75007 original size:23 final size:23
Alignment explanation
Indices: 74967--75012 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
74957 TAATTAGTAT
*
74967 TATTTTAATTAATAATAACTAAA
1 TATTTTAATTAATAATAAATAAA
*
74990 TATTTATAATTACT-ATAAATAAA
1 TATTT-TAATTAATAATAAATAAA
75013 ATAATAATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
TATTTTAATTAATAATAAATAAA
Found at i:75132 original size:6 final size:6
Alignment explanation
Indices: 75121--75193 Score: 60
Period size: 6 Copynumber: 12.2 Consensus size: 6
75111 TATCATAAAT
* * * * *
75121 TATTAA TATTAA TAATAT TAATAA TATTAA TA-TAT TAATAA CTATTAA
1 TATTAA TATTAA TATTAA TATTAA TATTAA TATTAA TATTAA -TATTAA
*
75169 TAACTAA T-TTAA TATTAA TATTAA T
1 T-ATTAA TATTAA TATTAA TATTAA T
75194 TAATTATGTA
Statistics
Matches: 54, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
5 8 0.15
6 36 0.67
7 10 0.19
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.47
Consensus pattern (6 bp):
TATTAA
Found at i:75136 original size:9 final size:9
Alignment explanation
Indices: 75115--75188 Score: 84
Period size: 9 Copynumber: 8.3 Consensus size: 9
75105 AAACAATATC
75115 ATAA-ATTA
1 ATAATATTA
*
75123 TTAATATTA
1 ATAATATTA
75132 ATAATATTA
1 ATAATATTA
75141 ATAATATTA
1 ATAATATTA
75150 AT-ATATTA
1 ATAATATTA
75158 ATAACTATTA
1 ATAA-TATTA
75168 ATAACTAATT-
1 ATAA-T-ATTA
75178 -TAATATTA
1 ATAATATTA
75186 ATA
1 ATA
75189 TTAATTAATT
Statistics
Matches: 58, Mismatches: 2, Indels: 11
0.82 0.03 0.15
Matches are distributed among these distances:
7 3 0.05
8 12 0.21
9 29 0.50
10 11 0.19
11 3 0.05
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (9 bp):
ATAATATTA
Found at i:76156 original size:16 final size:16
Alignment explanation
Indices: 76135--76189 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
76125 TATTATTAAA
76135 TATTATAATAAATATT
1 TATTATAATAAATATT
76151 TATTAT--TCAAATTATT
1 TATTATAAT-AAA-TATT
*
76167 TATTAAAAT-AATATTT
1 TATTATAATAAATA-TT
76183 TATTATA
1 TATTATA
76190 TAATAATTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
14 1 0.03
15 5 0.16
16 25 0.78
18 1 0.03
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTATAATAAATATT
Found at i:76269 original size:20 final size:18
Alignment explanation
Indices: 76236--76273 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
76226 AATTATTTCA
76236 ATTAATATTAATTTAAAT
1 ATTAATATTAATTTAAAT
76254 ATTAATTATATAATTTAAAT
1 ATTAA-TAT-TAATTTAAAT
76274 TAGGTTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 3 0.17
20 10 0.56
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
ATTAATATTAATTTAAAT
Found at i:76540 original size:14 final size:14
Alignment explanation
Indices: 76521--76547 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
76511 TAATATACAT
76521 TATATTTATTAAAA
1 TATATTTATTAAAA
76535 TATATTTATTAAA
1 TATATTTATTAAA
76548 TAAGACTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TATATTTATTAAAA
Found at i:77433 original size:24 final size:23
Alignment explanation
Indices: 77341--77441 Score: 56
Period size: 23 Copynumber: 4.6 Consensus size: 23
77331 ATTTAAAATT
* *
77341 ATTAATTTTAAATA-AATT-ATA
1 ATTAAATTTAAATATTATTAATA
77362 TATT-AATTATAAATA-TA-TAA-A
1 -ATTAAATT-TAAATATTATTAATA
*
77383 A-TAAATTTAAATCTTATTAATA
1 ATTAAATTTAAATATTATTAATA
* * *
77405 TTTAAATTTTAATATTTTTGAATA
1 ATTAAATTTAAATATTATT-AATA
77429 ATT-AATATTAAAT
1 ATTAAAT-TTAAAT
77442 TAATTATTTA
Statistics
Matches: 61, Mismatches: 9, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
19 6 0.10
20 7 0.11
21 8 0.13
22 12 0.20
23 17 0.28
24 11 0.18
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.49
Consensus pattern (23 bp):
ATTAAATTTAAATATTATTAATA
Found at i:77479 original size:23 final size:23
Alignment explanation
Indices: 77426--77479 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
77416 ATATTTTTGA
*
77426 ATAATTAATATTAAATTAATTAT
1 ATAATTAAAATTAAATTAATTAT
* * ** *
77449 TTATTTAAAATTATTTTGATTAT
1 ATAATTAAAATTAAATTAATTAT
77472 ATAATTAA
1 ATAATTAA
77480 CTAGGTTATA
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (23 bp):
ATAATTAAAATTAAATTAATTAT
Found at i:77871 original size:15 final size:15
Alignment explanation
Indices: 77837--77878 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
77827 TAATAAATTA
*
77837 TAATAATTAT-AATT
1 TAATAATTATAAATC
77851 TAAATAATTATAAATC
1 T-AATAATTATAAATC
77867 TAATAATATATA
1 TAATAAT-TATA
77879 TATAATTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 1 0.04
15 15 0.62
16 8 0.33
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (15 bp):
TAATAATTATAAATC
Found at i:77926 original size:31 final size:34
Alignment explanation
Indices: 77891--77972 Score: 81
Period size: 31 Copynumber: 2.6 Consensus size: 34
77881 TAATTTGTTT
*
77891 TATTAATTATTATA-AT-TATTATAATAT-TTAA
1 TATTAATTATTATATATGTATTAGAATATATTAA
*
77922 TATTAA-GA-TATATATGTATTAGAATATATTAA
1 TATTAATTATTATATATGTATTAGAATATATTAA
77954 TGATT-ATTATTA-A-ATGTAT
1 T-ATTAATTATTATATATGTAT
77973 AACCCATTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
29 4 0.10
30 3 0.07
31 16 0.38
32 12 0.29
33 5 0.12
34 2 0.05
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (34 bp):
TATTAATTATTATATATGTATTAGAATATATTAA
Found at i:78011 original size:22 final size:20
Alignment explanation
Indices: 77985--78025 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
77975 CCCATTTAAA
77985 TTTAATTATTATAAAAAATTAT
1 TTTAA-TATT-TAAAAAATTAT
*
78007 TTTAATATTTAAAATATTA
1 TTTAATATTTAAAAAATTA
78026 AATAAGTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 4 0.22
22 5 0.28
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTAATATTTAAAAAATTAT
Found at i:79114 original size:17 final size:17
Alignment explanation
Indices: 79043--79115 Score: 50
Period size: 17 Copynumber: 4.5 Consensus size: 17
79033 TTAACATATA
*
79043 TTAATTAAT-ATTTTAT
1 TTAATTATTAATTTTAT
*
79059 TTAA--ATTAA-TCTAT
1 TTAATTATTAATTTTAT
*
79073 TT-ATTATATAATAATTA-
1 TTAATTAT-TAAT-TTTAT
79090 TTATATTATTAATTTTAT
1 TTA-ATTATTAATTTTAT
79108 TTAATTAT
1 TTAATTAT
79116 AATAAAATAA
Statistics
Matches: 43, Mismatches: 5, Indels: 17
0.66 0.08 0.26
Matches are distributed among these distances:
13 1 0.02
14 8 0.19
15 3 0.07
16 7 0.16
17 10 0.23
18 9 0.21
19 5 0.12
ACGTcount: A:0.40, C:0.01, G:0.00, T:0.59
Consensus pattern (17 bp):
TTAATTATTAATTTTAT
Found at i:80689 original size:26 final size:27
Alignment explanation
Indices: 80657--80715 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 27
80647 TACATGTTTT
* *
80657 AATATATT-AATTTGTTTAAATTAAAA
1 AATATATTAAATTTATTTAAAGTAAAA
*
80683 AATATATTAAAATTTATTTTAAGTAAAA
1 AATATATT-AAATTTATTTAAAGTAAAA
80711 AATAT
1 AATAT
80716 TGCAATAGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 8 0.29
28 20 0.71
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (27 bp):
AATATATTAAATTTATTTAAAGTAAAA
Found at i:82073 original size:13 final size:13
Alignment explanation
Indices: 82055--82280 Score: 76
Period size: 13 Copynumber: 17.6 Consensus size: 13
82045 TCGATTGTAT
*
82055 TTATTAATTATAC
1 TTATTAATTATAA
82068 TTATTAATTATAA
1 TTATTAATTATAA
82081 TTA-TAATTATTAA
1 TTATTAATTA-TAA
82094 -T-TTAA--A-AA
1 TTATTAATTATAA
*
82102 TTA-TCATT-TAA
1 TTATTAATTATAA
82113 -TATTAATTA-AA
1 TTATTAATTATAA
*
82124 TTA-TAATCA-AA
1 TTATTAATTATAA
* *
82135 TTATAATATTATGA
1 TTATTA-ATTATAA
82149 TTATT--TTATAA
1 TTATTAATTATAA
*
82160 TTCATTTTAATAATATTA
1 TT-A--TTAAT--TATAA
* *
82178 TTATTTATAATAA
1 TTATTAATTATAA
82191 TTATTAATTTATAA
1 TTATTAA-TTATAA
82205 -TATTAA-TATAAA
1 TTATTAATTAT-AA
82217 TGTTATTAA-TATAA
1 --TTATTAATTATAA
82231 CTTA--AATTAATAAA
1 -TTATTAATT-AT-AA
*
82245 TTATATAATAATAA
1 TTAT-TAATTATAA
*
82259 TTATTATATTAAAA
1 TTATTA-ATTATAA
*
82273 TAATTAAT
1 TTATTAAT
82281 ATTTAATAAT
Statistics
Matches: 161, Mismatches: 20, Indels: 64
0.66 0.08 0.26
Matches are distributed among these distances:
8 2 0.01
9 3 0.02
10 3 0.02
11 30 0.19
12 17 0.11
13 48 0.30
14 32 0.20
15 15 0.09
16 4 0.02
17 1 0.01
18 6 0.04
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (13 bp):
TTATTAATTATAA
Found at i:82081 original size:6 final size:6
Alignment explanation
Indices: 82059--82141 Score: 57
Period size: 6 Copynumber: 13.7 Consensus size: 6
82049 TTGTATTTAT
* * *
82059 TAATTA TACTTA TTAATTA TAATTA TAATTA TTAATTTAA AAATTA TCATT-
1 TAATTA TAATTA -TAATTA TAATTA TAATTA -TAA-TT-A TAATTA TAATTA
*
82110 TAA-TA TTAATTA -AATTA TAATCA -AATTA TAAT
1 TAATTA -TAATTA TAATTA TAATTA TAATTA TAAT
82142 ATTATGATTA
Statistics
Matches: 60, Mismatches: 8, Indels: 18
0.70 0.09 0.21
Matches are distributed among these distances:
4 1 0.02
5 11 0.18
6 31 0.52
7 12 0.20
8 4 0.07
9 1 0.02
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (6 bp):
TAATTA
Found at i:82081 original size:19 final size:19
Alignment explanation
Indices: 82059--82095 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
82049 TTGTATTTAT
*
82059 TAATTATACTTATTAATTA
1 TAATTATAATTATTAATTA
82078 TAATTATAATTATTAATT
1 TAATTATAATTATTAATT
82096 TAAAAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (19 bp):
TAATTATAATTATTAATTA
Found at i:82200 original size:17 final size:16
Alignment explanation
Indices: 82148--82206 Score: 63
Period size: 15 Copynumber: 3.8 Consensus size: 16
82138 TAATATTATG
82148 ATTATTT-T-ATAATT
1 ATTATTTATAATAATT
*
82162 CATT-TTAATAAT-ATT
1 -ATTATTTATAATAATT
82177 ATTATTTATAATAATT
1 ATTATTTATAATAATT
82193 ATTAATTTATAATA
1 ATT-ATTTATAATA
82207 TTAATATAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 5 0.14
15 14 0.38
16 8 0.22
17 10 0.27
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTATTTATAATAATT
Found at i:82205 original size:32 final size:32
Alignment explanation
Indices: 82135--82209 Score: 82
Period size: 32 Copynumber: 2.3 Consensus size: 32
82125 TATAATCAAA
* *
82135 TTATAATATTATGATTATTTTATAATTCATTT
1 TTATAATATTATGATTATATAATAATTCATTT
* *
82167 TAATAATATTATTATT-TATAATAATT-ATTAAT
1 TTATAATATTATGATTATATAATAATTCATT--T
82199 TTATAATATTA
1 TTATAATATTA
82210 ATATAAATGT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
30 3 0.08
31 8 0.22
32 25 0.69
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (32 bp):
TTATAATATTATGATTATATAATAATTCATTT
Found at i:82266 original size:17 final size:17
Alignment explanation
Indices: 82244--82290 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
82234 AAATTAATAA
82244 ATTATATAATAATAATT
1 ATTATATAATAATAATT
82261 ATTATATTAA-AATAATT
1 ATTATA-TAATAATAATT
* *
82278 AATATTTAATAAT
1 ATTATATAATAAT
82291 TGTATATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 3 0.12
17 20 0.77
18 3 0.12
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTATATAATAATAATT
Found at i:82421 original size:23 final size:24
Alignment explanation
Indices: 82390--82437 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
82380 GAACTAAAAC
*
82390 AATTGTTTT-ATGATAAAAAAATA
1 AATTATTTTAATGATAAAAAAATA
* *
82413 AATTATTTTAATTATAATAAAATA
1 AATTATTTTAATGATAAAAAAATA
82437 A
1 A
82438 TTTTATTACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (24 bp):
AATTATTTTAATGATAAAAAAATA
Found at i:82439 original size:23 final size:22
Alignment explanation
Indices: 82374--82439 Score: 62
Period size: 23 Copynumber: 3.0 Consensus size: 22
82364 TTGGATAAGC
* * *
82374 TTTTATGA-ACTAAAACAATTG
1 TTTTATGATAATAAAATAATTA
*
82395 TTTTATGATAAAAAAATAAATTA
1 TTTTATGATAATAAAAT-AATTA
*
82418 TTTTAATTATAATAAAATAATT
1 TTTT-ATGATAATAAAATAATT
82440 TTATTACAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 8 0.22
22 5 0.14
23 12 0.33
24 11 0.31
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (22 bp):
TTTTATGATAATAAAATAATTA
Found at i:83089 original size:25 final size:24
Alignment explanation
Indices: 83051--83111 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
83041 TTATTATATA
* *
83051 TTATTATAAT-AATATATAATAATCT
1 TTATT-TAATAAATAAACAATAAT-T
*
83076 TTATTTAATAAATAAACAATTATT
1 TTATTTAATAAATAAACAATAATT
83100 TATATTTAATAA
1 T-TATTTAATAA
83112 TAGATATTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 6 0.19
25 25 0.81
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (24 bp):
TTATTTAATAAATAAACAATAATT
Found at i:84254 original size:156 final size:158
Alignment explanation
Indices: 84014--84298 Score: 333
Period size: 156 Copynumber: 1.8 Consensus size: 158
84004 ATGAATAGAA
* * *
84014 AAATAATAATTTTATAACAAAACAAAAGGTCATAATAATTTTAAATAAACAAATGTTCAAACAAT
1 AAATAATAATTTTATAACAAAACAAAAGGTCAGAACAATTTTAAATAAACAAATGATCAAACAAT
* * * * *
84079 CGTAACTATCTGAATTTGTTCAATATACAAATTTATTTTTT-AAA-CTTCTACTTATTAATTTTT
66 CATAACTATCTAAACTTGTTCAACAAACAAATTTATTTTTTCAAATCTTCTACTTATTAATTTTT
84142 TTTGTTTTGGATAAGCTTTTATGAATTG
131 TTTGTTTTGGATAAGCTTTTATGAATTG
* ** * * * * * *
84170 AAATAATTATTTTATGTCCAAACAAAAGGTCAGAACGATTTTATAA-AAATAATTGATCAAATAG
1 AAATAATAATTTTATAACAAAACAAAAGGTCAGAACAATTTTA-AATAAACAAATGATCAAACAA
* *** * *
84234 TCATAACTATTTAAACTTGTTTGGCAAACAAATTTATTTTTTCAAATCTTTTGCTTATTAATTTT
65 TCATAACTATCTAAACTTGTTCAACAAACAAATTTATTTTTTCAAATCTTCTACTTATTAATTTT
84299 CCAAATGTTC
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
156 82 0.80
157 5 0.05
158 16 0.16
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (158 bp):
AAATAATAATTTTATAACAAAACAAAAGGTCAGAACAATTTTAAATAAACAAATGATCAAACAAT
CATAACTATCTAAACTTGTTCAACAAACAAATTTATTTTTTCAAATCTTCTACTTATTAATTTTT
TTTGTTTTGGATAAGCTTTTATGAATTG
Found at i:84561 original size:17 final size:17
Alignment explanation
Indices: 84527--84564 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
84517 ATATAGTATT
*
84527 ATTATATTATTATTTAA
1 ATTATATTATTATATAA
84544 ATTATATTATT-TGATAA
1 ATTATATTATTAT-ATAA
84561 ATTA
1 ATTA
84565 AATAAGATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 1 0.05
17 18 0.95
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (17 bp):
ATTATATTATTATATAA
Found at i:85200 original size:18 final size:18
Alignment explanation
Indices: 85179--85223 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
85169 TGTATAAATA
*
85179 TTAATTTATTTATACAAC
1 TTAATTTATTAATACAAC
* * *
85197 TTAATTAATTAATACTAT
1 TTAATTTATTAATACAAC
85215 TTAATTTAT
1 TTAATTTAT
85224 AAAATCAAAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (18 bp):
TTAATTTATTAATACAAC
Found at i:85504 original size:25 final size:24
Alignment explanation
Indices: 85468--85522 Score: 69
Period size: 23 Copynumber: 2.3 Consensus size: 24
85458 TATTTAACAT
85468 TAAAT-TTAATTTTTGAATTATCAAA
1 TAAATATTAATTTTT-AATT-TCAAA
*
85493 TAAATATT-ATTTTTAATTTGAAA
1 TAAATATTAATTTTTAATTTCAAA
85516 TAAATAT
1 TAAATAT
85523 AAGTTAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 11 0.39
24 4 0.14
25 11 0.39
26 2 0.07
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (24 bp):
TAAATATTAATTTTTAATTTCAAA
Found at i:85691 original size:10 final size:10
Alignment explanation
Indices: 85664--85729 Score: 53
Period size: 10 Copynumber: 6.2 Consensus size: 10
85654 AATCAAACAA
85664 TATATAAATAT
1 TATATAAAT-T
85675 TAT-TAAATT
1 TATATAAATT
85684 TATATAAATT
1 TATATAAATT
* *
85694 TAAATCAATT
1 TATATAAATT
*
85704 TGTATAATTCTATT
1 TATATAA----ATT
85718 TATATAAATT
1 TATATAAATT
85728 TA
1 TA
85730 ATTTAAAATT
Statistics
Matches: 44, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
9 4 0.09
10 28 0.64
11 3 0.07
14 9 0.20
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (10 bp):
TATATAAATT
Found at i:85882 original size:18 final size:18
Alignment explanation
Indices: 85856--85894 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
85846 TAATATTTAA
*
85856 TAATAATAATATCATTAT
1 TAATAATAAAATCATTAT
* *
85874 TAATGATAAAATGATTAT
1 TAATAATAAAATCATTAT
85892 TAA
1 TAA
85895 ATTATGAAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (18 bp):
TAATAATAAAATCATTAT
Found at i:87101 original size:23 final size:22
Alignment explanation
Indices: 86997--87167 Score: 64
Period size: 20 Copynumber: 7.9 Consensus size: 22
86987 TTACAATATA
*
86997 AATTAATTATAATTAT-ATTAAT
1 AATTAA-TATAATTATAAATAAT
87019 AATTCAA-ATAA-TAT-AATAAT
1 AATT-AATATAATTATAAATAAT
* * *
87039 AAAT-ATATAA-TGTAATTAAT
1 AATTAATATAATTATAAATAAT
* **
87059 ACTATAA-AT-ATTAT-TCTAAT
1 AAT-TAATATAATTATAAATAAT
87079 AATCTAATATAATTATAAATAAT
1 AAT-TAATATAATTATAAATAAT
87102 AATTTATTTATATTAATTATAAAATAA-
1 AA-TTA---ATA-TAATTAT-AAATAAT
87129 AATTAATAT--TTAT-AAT-AT
1 AATTAATATAATTATAAATAAT
*
87147 AATGTAATATTATTAATAAAT
1 AAT-TAATATAATT-ATAAAT
87168 TATTAGTATT
Statistics
Matches: 115, Mismatches: 13, Indels: 41
0.68 0.08 0.24
Matches are distributed among these distances:
17 1 0.01
18 7 0.06
19 12 0.10
20 31 0.27
21 13 0.11
22 13 0.11
23 16 0.14
24 1 0.01
26 6 0.05
27 9 0.08
28 6 0.05
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (22 bp):
AATTAATATAATTATAAATAAT
Found at i:87122 original size:27 final size:28
Alignment explanation
Indices: 87088--87142 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
87078 TAATCTAATA
87088 TAATTAT-AAATAATAATT-TATTTATAT
1 TAATTATAAAATAA-AATTATATTTATAT
87115 TAATTATAAAATAAAATTAATATTTATA
1 TAATTATAAAATAAAATT-ATATTTATA
87143 ATATAATGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
27 11 0.44
28 6 0.24
29 8 0.32
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (28 bp):
TAATTATAAAATAAAATTATATTTATAT
Found at i:87246 original size:12 final size:12
Alignment explanation
Indices: 87229--87254 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
87219 ATAAGCAATA
87229 AAATATAATATT
1 AAATATAATATT
87241 AAATATAATATT
1 AAATATAATATT
87253 AA
1 AA
87255 GAATATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (12 bp):
AAATATAATATT
Found at i:87310 original size:22 final size:22
Alignment explanation
Indices: 87282--87324 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
87272 TTATATTTAT
*
87282 AAATATTAAAATTATTATAATA
1 AAATATTAAAATTATAATAATA
**
87304 AAATATTGTAATTATAATAAT
1 AAATATTAAAATTATAATAAT
87325 TGTTCATATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
AAATATTAAAATTATAATAATA
Found at i:87552 original size:18 final size:17
Alignment explanation
Indices: 87497--87561 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 17
87487 TATATGTTAA
87497 TTATAT-ATAATATTA-
1 TTATATAATAATATTAT
* *
87512 ATAAAT-ATAATATTAT
1 TTATATAATAATATTAT
87528 TTATATAATAA-ATTAT
1 TTATATAATAATATTAT
*
87544 ATTACTATAATGATATTA
1 -TTA-TATAATAATATTA
87562 AACTATTTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
15 13 0.32
16 9 0.22
17 7 0.17
18 7 0.17
19 4 0.10
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (17 bp):
TTATATAATAATATTAT
Found at i:87611 original size:23 final size:25
Alignment explanation
Indices: 87571--87616 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
87561 AAACTATTTT
87571 AATATATAAAAATATATA-TTTACG
1 AATATATAAAAATATATAGTTTACG
* *
87595 AATA-ATAAATATTTATAGTTTA
1 AATATATAAAAATATATAGTTTA
87617 TTAATTTAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.41
Consensus pattern (25 bp):
AATATATAAAAATATATAGTTTACG
Found at i:87738 original size:21 final size:20
Alignment explanation
Indices: 87692--87730 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
87682 ATCTCAATTT
*
87692 ATAATTATAATATAGTTACA
1 ATAATTATAATATAATTACA
87712 ACTAATTATAATATAATTA
1 A-TAATTATAATATAATTA
87731 TTAATAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (20 bp):
ATAATTATAATATAATTACA
Found at i:87740 original size:18 final size:17
Alignment explanation
Indices: 87714--87772 Score: 66
Period size: 18 Copynumber: 3.4 Consensus size: 17
87704 TAGTTACAAC
87714 TAATTATAATATAATTAT
1 TAATTATAATATAA-TAT
*
87732 TAATAATAACTATAA-AT
1 TAATTATAA-TATAATAT
*
87749 TAATTATATTATAATAAT
1 TAATTATAATATAAT-AT
87767 TAATTA
1 TAATTA
87773 ACTATATAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
16 5 0.14
17 9 0.26
18 16 0.46
19 5 0.14
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
TAATTATAATATAATAT
Found at i:87762 original size:35 final size:33
Alignment explanation
Indices: 87714--87800 Score: 99
Period size: 35 Copynumber: 2.6 Consensus size: 33
87704 TAGTTACAAC
*
87714 TAATTATAATATAATTATTAATAATAACTATA-AA
1 TAATTATATTATAATTATTAAT--TAACTATATAA
*
87748 TTAATTATATTATAATAATTAATTAACTATATAA
1 -TAATTATATTATAATTATTAATTAACTATATAA
*
87782 TAATT-TATTATTA-TATTAA
1 TAATTATATTATAATTATTAA
87801 AAAAATCTAT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
31 5 0.11
32 7 0.15
33 13 0.28
34 2 0.04
35 20 0.43
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (33 bp):
TAATTATATTATAATTATTAATTAACTATATAA
Found at i:87765 original size:19 final size:19
Alignment explanation
Indices: 87743--87799 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 19
87733 AATAATAACT
87743 ATAAATTAATTATATTATA
1 ATAAATTAATTATATTATA
87762 AT-AATTAATTA-ACTATATA
1 ATAAATTAATTATA-T-TATA
*
87781 ATAATTTATTATTATATTA
1 ATAAATTA--ATTATATTA
87800 AAAAAATCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 10
0.74 0.02 0.24
Matches are distributed among these distances:
17 1 0.03
18 10 0.32
19 8 0.26
20 4 0.13
21 2 0.06
22 5 0.16
23 1 0.03
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
ATAAATTAATTATATTATA
Found at i:87771 original size:22 final size:22
Alignment explanation
Indices: 87720--87799 Score: 62
Period size: 19 Copynumber: 3.7 Consensus size: 22
87710 CAACTAATTA
*
87720 TAATATAATTAT-TAATAATAACT
1 TAAT-TAATTATATTATAATAA-T
87743 ATAAATTAATTATATTATAATAAT
1 -T-AATTAATTATATTATAATAAT
*
87767 TAATTAA--CTA-TATAATAAT
1 TAATTAATTATATTATAATAAT
*
87786 TTATT-ATTATATTA
1 TAATTAATTATATTA
87800 AAAAAATCTA
Statistics
Matches: 47, Mismatches: 4, Indels: 13
0.73 0.06 0.20
Matches are distributed among these distances:
18 1 0.02
19 13 0.28
20 4 0.09
21 2 0.04
22 6 0.13
23 1 0.02
24 9 0.19
25 11 0.23
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (22 bp):
TAATTAATTATATTATAATAAT
Found at i:88524 original size:25 final size:26
Alignment explanation
Indices: 88481--88543 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 26
88471 TTTCAATTAT
88481 TAATAATATTAATAATTTAA-GCATA
1 TAATAATATTAATAATTTAACGCATA
*
88506 TAATAATATT-ATAATTTTAACGCTTA
1 TAATAATATTAATAA-TTTAACGCATA
*
88532 TAA-AATTTTAAT
1 TAATAATATTAAT
88544 TGTCAAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
24 4 0.12
25 20 0.61
26 9 0.27
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (26 bp):
TAATAATATTAATAATTTAACGCATA
Found at i:88915 original size:21 final size:22
Alignment explanation
Indices: 88875--88935 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 22
88865 TTAAATAATT
88875 ATTAATATAATTAATATTAATT
1 ATTAATATAATTAATATTAATT
* **
88897 ATTATTAT-ATTTGTATTAATT
1 ATTAATATAATTAATATTAATT
*
88918 ATTAAAATAATT-ATATTA
1 ATTAATATAATTAATATTA
88936 TAGATTATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
21 22 0.69
22 10 0.31
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
ATTAATATAATTAATATTAATT
Found at i:89239 original size:175 final size:173
Alignment explanation
Indices: 89001--89333 Score: 382
Period size: 175 Copynumber: 1.9 Consensus size: 173
88991 GACATTTTAT
* * *
89001 TTTATTATAAAATAATTGTTTCTATTCATACAAAATTATTCAAAATAAAATAATACCAATTTATT
1 TTTATTAAAAAATAATTGTTTCCATTCATACAAAATCATTCAAAATAAAATAATACCAATTTATT
** * * * * *
89066 ACTATTTCAAAAATTAATAAG-GATTTAAAAATAAATGTGTTT-TTCGAAGCAGTTCAAATAGTT
66 AAAATTTCAAAAATTAATAAGAAATTT-AAAA-AAATCTATTTACT-GAAGAAGTTCAAATAGTT
*
89129 AAGACTATTAGAACAATTATCTATTTCAAATTATTCTGATCTTTTG
128 AAGACTATTAGAACAATTATCTATTTAAAATTATTCTGATCTTTTG
*** * * * *
89175 TTTAGTTAAAAAATAATTGTTTCCATTCATACATGCTCATTCGAAATATAGTAATACTAATTTAT
1 TTTA-TTAAAAAATAATTGTTTCCATTCATACAAAATCATTCAAAATAAAATAATACCAATTTAT
*** * * * *
89240 TAAAATTTGGCAAATTAATAAGAAATTTTAAAAAATCTATTTACTGAATAAGTTGAAATAGTTAT
65 TAAAATTTCAAAAATTAATAAGAAATTTAAAAAAATCTATTTACTGAAGAAGTTCAAATAGTTAA
*
89305 GACTATTTGAACAATTATCTATTTAAAAT
130 GACTATTAGAACAATTATCTATTTAAAAT
89334 CGTTATGGCT
Statistics
Matches: 130, Mismatches: 26, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
174 55 0.42
175 71 0.55
176 4 0.03
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.40
Consensus pattern (173 bp):
TTTATTAAAAAATAATTGTTTCCATTCATACAAAATCATTCAAAATAAAATAATACCAATTTATT
AAAATTTCAAAAATTAATAAGAAATTTAAAAAAATCTATTTACTGAAGAAGTTCAAATAGTTAAG
ACTATTAGAACAATTATCTATTTAAAATTATTCTGATCTTTTG
Found at i:90699 original size:16 final size:16
Alignment explanation
Indices: 90680--90721 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
90670 AAATATTATT
90680 TATAAATAATAATATA
1 TATAAATAATAATATA
*
90696 TATAAATAACT-ATTTA
1 TATAAATAA-TAATATA
90712 TA-AAATAATA
1 TATAAATAATA
90722 GCTATCTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 1 0.04
15 6 0.26
16 15 0.65
17 1 0.04
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (16 bp):
TATAAATAATAATATA
Found at i:90773 original size:13 final size:13
Alignment explanation
Indices: 90755--90809 Score: 58
Period size: 13 Copynumber: 4.1 Consensus size: 13
90745 GAATAAAATT
* *
90755 TATATATTTATTA
1 TATATAATTATAA
90768 TATATAATTATAA
1 TATATAATTATAA
90781 TATATAATAATATAA
1 TATATAAT--TATAA
90796 TAT-TAATTAATAA
1 TATATAATT-ATAA
90809 T
1 T
90810 TGTATAGATT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
12 1 0.03
13 24 0.65
14 4 0.11
15 8 0.22
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
TATATAATTATAA
Found at i:90784 original size:15 final size:15
Alignment explanation
Indices: 90766--90807 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
90756 ATATATTTAT
90766 TATAT-ATAATTATAA
1 TATATAATAA-TATAA
90781 TATATAATAATATAA
1 TATATAATAATATAA
90796 TAT-TAATTAATA
1 TATATAA-TAATA
90808 ATTGTATAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 3 0.12
15 18 0.72
16 4 0.16
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TATATAATAATATAA
Found at i:90806 original size:10 final size:11
Alignment explanation
Indices: 90763--90968 Score: 51
Period size: 10 Copynumber: 18.5 Consensus size: 11
90753 TTTATATATT
90763 TATTATATATAA
1 TATTA-ATATAA
90775 T-TATAATAT-A
1 TAT-TAATATAA
*
90785 TAATAATATAA
1 TATTAATATAA
90796 TATTAAT-TAA
1 TATTAATATAA
*
90806 TAATT-GTATAGA
1 T-ATTAATATA-A
*
90818 TTTAGTAATTAGTAA
1 --TATTAA-TA-TAA
90833 -ATATAATATAA
1 TAT-TAATATAA
90844 TATTAAT-TAA
1 TATTAATATAA
* *
90854 -ACTAATAAAA
1 TATTAATATAA
90864 TATT--TATAA
1 TATTAATATAA
*
90873 TAATT-ATTTAA
1 T-ATTAATATAA
*
90884 TATTAAT-TAC
1 TATTAATATAA
90894 TATTAATATTTAA
1 TATTAATA--TAA
* * *
90907 TTATCAATTTAT
1 -TATTAATATAA
*
90919 TA-AAATATAA
1 TATTAATATAA
*
90929 TATTATATAAAA
1 TATTA-ATATAA
*
90941 TAATTTAGTATAA
1 T-A-TTAATATAA
*
90954 TATTATTA-AA
1 TATTAATATAA
90964 TATTA
1 TATTA
90969 TAAGTTTTAA
Statistics
Matches: 144, Mismatches: 24, Indels: 54
0.65 0.11 0.24
Matches are distributed among these distances:
9 10 0.07
10 47 0.33
11 41 0.28
12 18 0.12
13 13 0.09
14 10 0.07
15 3 0.02
16 2 0.01
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.46
Consensus pattern (11 bp):
TATTAATATAA
Found at i:90850 original size:24 final size:24
Alignment explanation
Indices: 90778--90853 Score: 64
Period size: 24 Copynumber: 3.1 Consensus size: 24
90768 TATATAATTA
*
90778 TAATATATAATAATATAATATTAAT
1 TAATAAAT-ATAATATAATATTAAT
* * * * *
90803 TAATAATTGT-ATAGATTTAGTAAT
1 TAATAAATATAATATA-ATATTAAT
*
90827 TAGTAAATATAATATAATATTAAT
1 TAATAAATATAATATAATATTAAT
90851 TAA
1 TAA
90854 ACTAATAAAA
Statistics
Matches: 36, Mismatches: 13, Indels: 5
0.67 0.24 0.09
Matches are distributed among these distances:
23 4 0.11
24 22 0.61
25 10 0.28
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.43
Consensus pattern (24 bp):
TAATAAATATAATATAATATTAAT
Found at i:91485 original size:13 final size:14
Alignment explanation
Indices: 91467--91498 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
91457 AATTCTTATG
91467 ATTTAAA-TATATA
1 ATTTAAATTATATA
91480 ATTTAAATTATATA
1 ATTTAAATTATATA
91494 ATTTA
1 ATTTA
91499 TTAAGTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
ATTTAAATTATATA
Found at i:91523 original size:24 final size:24
Alignment explanation
Indices: 91488--91539 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
91478 TAATTTAAAT
91488 TATATAATTTATTAAGTTATTAA-C
1 TATATAATTTATTAAGTTA-TAATC
*
91512 TATA-AATATTATTCAGTTATAATC
1 TATATAAT-TTATTAAGTTATAATC
91536 TATA
1 TATA
91540 CAGTTAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 6 0.24
24 19 0.76
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.48
Consensus pattern (24 bp):
TATATAATTTATTAAGTTATAATC
Found at i:91680 original size:25 final size:25
Alignment explanation
Indices: 91615--91672 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
91605 TATATTATAG
* *
91615 TATTAAAT-ATAACTAGTAAAAATA
1 TATTAAATAATAATTATTAAAAATA
*
91639 TATTTAATAATAATTATTAAAAATA
1 TATTAAATAATAATTATTAAAAATA
91664 T-TTAAATAA
1 TATTAAATAA
91673 ATATTTATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 14 0.48
25 15 0.52
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (25 bp):
TATTAAATAATAATTATTAAAAATA
Found at i:91737 original size:39 final size:39
Alignment explanation
Indices: 91666--91759 Score: 106
Period size: 39 Copynumber: 2.4 Consensus size: 39
91656 TAAAAATATT
*
91666 TAAA-TAAATATTTA-TATTTTAATCAATTAATTAAATA
1 TAAATTAAATATTTATTATTTTAATCAATAAATTAAATA
*
91703 -AAAGTTAAATATTTATTATATTT-ATGAATAAATTAAATA
1 TAAA-TTAAATATTTATTAT-TTTAATCAATAAATTAAATA
91742 TAAATTAAACTAATTTAT
1 TAAATTAAA-T-ATTTAT
91760 CCTTAATAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
36 3 0.06
38 10 0.21
39 22 0.46
40 7 0.15
41 6 0.12
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (39 bp):
TAAATTAAATATTTATTATTTTAATCAATAAATTAAATA
Found at i:92162 original size:17 final size:18
Alignment explanation
Indices: 92130--92164 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
92120 CTAACTAATC
92130 TTATATAATATTAGTTAAA
1 TTATATAATA-TAGTTAAA
92149 TTATATAATA-AGTTAA
1 TTATATAATATAGTTAA
92165 TCCAAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
19 10 0.62
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (18 bp):
TTATATAATATAGTTAAA
Found at i:92438 original size:21 final size:20
Alignment explanation
Indices: 92414--92469 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
92404 TAATTGTTTT
92414 AAATTATTTATTTAAATAATA
1 AAATTATTTATTT-AATAATA
* *
92435 AAATTATTAATATTATTAATA
1 AAATTATTTAT-TTAATAATA
*
92456 ATATTATATTATTT
1 AAATTAT-TTATTT
92470 TAAACTATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 24 0.83
22 5 0.17
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
AAATTATTTATTTAATAATA
Found at i:92451 original size:9 final size:9
Alignment explanation
Indices: 92437--92514 Score: 51
Period size: 9 Copynumber: 8.7 Consensus size: 9
92427 AAATAATAAA
92437 ATTATTAAT
1 ATTATTAAT
92446 ATTATTAAT
1 ATTATTAAT
*
92455 AATATT-AT
1 ATTATTAAT
92463 ATTATTTTAAACT
1 ATTA--TT-AA-T
92476 ATT-TTAAT
1 ATTATTAAT
92484 A-T-TT-AT
1 ATTATTAAT
92490 ATTATTAATT
1 ATTATTAA-T
92500 ATTA-TAAT
1 ATTATTAAT
92508 AATTATT
1 -ATTATT
92515 TAAATAATTA
Statistics
Matches: 56, Mismatches: 2, Indels: 21
0.71 0.03 0.27
Matches are distributed among these distances:
6 3 0.05
7 4 0.07
8 10 0.18
9 24 0.43
10 10 0.18
12 1 0.02
13 4 0.07
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.56
Consensus pattern (9 bp):
ATTATTAAT
Found at i:92835 original size:22 final size:24
Alignment explanation
Indices: 92810--92858 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
92800 ATTATATAAC
*
92810 AAAATTAATCAAT-ATTTATTT-T
1 AAAATTAATCAATGATTAATTTAT
*
92832 AAAATTAATTAATGATTAATTTAT
1 AAAATTAATCAATGATTAATTTAT
92856 AAA
1 AAA
92859 TAATTTTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 12 0.52
23 7 0.30
24 4 0.17
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (24 bp):
AAAATTAATCAATGATTAATTTAT
Found at i:93865 original size:13 final size:13
Alignment explanation
Indices: 93843--93875 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
93833 ACAATAAATA
93843 TTAT-TAATTAAT
1 TTATATAATTAAT
93855 TTATATAATTAAT
1 TTATATAATTAAT
*
93868 TCATATAA
1 TTATATAA
93876 AGATATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (13 bp):
TTATATAATTAAT
Found at i:94050 original size:21 final size:21
Alignment explanation
Indices: 94021--94062 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
94011 TTAAATCTAA
*
94021 TTTATTTATATAA-TTAAAATT
1 TTTACTTAT-TAATTTAAAATT
94042 TTTACTTATTAATTTAAAATT
1 TTTACTTATTAATTTAAAATT
94063 AAAATAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTACTTATTAATTTAAAATT
Found at i:94116 original size:17 final size:17
Alignment explanation
Indices: 94074--94126 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
94064 AAATAATTGT
94074 TATAATTAA--ATAATAA
1 TATAATTAATTATAAT-A
*
94090 TCTAATTTAATTATAATA
1 TATAA-TTAATTATAATA
*
94108 TATAATTAATTAAAATA
1 TATAATTAATTATAATA
94125 TA
1 TA
94127 ATATAAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 4 0.13
17 17 0.55
18 5 0.16
19 5 0.16
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
TATAATTAATTATAATA
Done.