Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168126.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_37, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 424845
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.38
Warning! 4000 characters in sequence are not A, C, G, or T
File 4 of 8
Found at i:156430 original size:354 final size:353
Alignment explanation
Indices: 155688--156529 Score: 978
Period size: 354 Copynumber: 2.4 Consensus size: 353
155678 AGCTTATTTC
* * ** *
155688 AAATCTATTTACCAAATAATTTTGAATAGTTATGATTA-TTGGAACAATTATTTATTTCAAATCG
1 AAATCTATTTACCAAACAAGTTCAAATAGTTATGACTATTTGG-ACAATTATTTATTTCAAATCG
* * ** *
155752 TTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTTTTCATATTAGCTTATTTGGATTAAAAT
65 TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTA--T---TTCAAAT
* * *
155817 AATATTAATTTATTAATATTTCAACAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACC
125 -ATA--AATTTACTAATATTCCAACAATTAATAAGTAAAAGATGTAAAAAATAAATATGTTTACC
* * *
155882 GAACAAGTTCAAATAGTAATAACTATCTAAATAATTATCTATTTCAATTCGTTATGACCTTTTGT
187 GAACAAGTTCAAATAATAATAACCATCTAAACAATTATCTATTTCAATTCGTTATGACCTTTTGT
* *
155947 TTCACCATAAACAATTATATCAATTCATATAGGCTTATTTGAAATAAAATAATACTAACTTATTA
252 TTCACCATAAACAATTATATCAATTCATAAAAGCTTATTTGAAATAAAATAATACTAACTTATTA
** * *
156012 CTATTCCAATAATTAATGAGTAAGAAATTTAAAAAAT
317 AAATTCCAAAAATTAATAAGTAAGAAATTTAAAAAAT
* * *
156049 GAATCTATTTACCAAACAAGTTCAAATAGTTATGACTATTTGGACAATTATCTATTTCAAATTGT
1 AAATCTATTTACCAAACAAGTTCAAATAGTTATGACTATTTGGACAATTATTTATTTCAAATCGT
* *
156114 TATGACCTTTTGTTTTGCCATAAAACAATTGTTTTTGTTCATACAAGCTTATTTCAAATATAAAT
66 TATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTTCAAATATAAAT
* * * *** *
156179 TTACTAATATTCCAA-AGATTGATAAGTAAAA-ATGTATAAAATAAATTTGTTTTTTGAACACGT
131 TTACTAATATTCCAACA-ATTAATAAGTAAAAGATGTAAAAAATAAATATGTTTACCGAACAAGT
* * ***
156242 TCAAAATAATAATAACCATTTGAACAATTATCTATTTCAAATT-GTTATGACCTTTTGTTTTGTC
195 TC-AAATAATAATAACCATCTAAACAATTATCTATTTC-AATTCGTTATGACCTTTTGTTTCACC
* * * *
156306 ATAAACCAATTGTTTCTATTCATAAAAGCTTATTTGAAATAAAATAATACTAATTTATTAAAATT
258 ATAAA-CAATTATATCAATTCATAAAAGCTTATTTGAAATAAAATAATACTAACTTATTAAAATT
*
156371 TCAAAAATTAATAAGTAA-AATATTTAAAAAAT
322 CCAAAAATTAATAAGTAAGAA-ATTTAAAAAAT
* * *** * ** *
156403 AAATTTGTTTACCAAGTGAGTTCAAATAATTATGACTATTTAAATAATTATTTATTTCAAATCGT
1 AAATCTATTTACCAAACAAGTTCAAATAGTTATGACTATTTGGACAATTATTTATTTCAAATCGT
* * * * **
156468 TATGATCATTTGTTTTGTAATAAAACAATTGTTTCTATTCATACAAAATTA-TTCAAA-ATAAA
66 TATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTTCAAATATAAA
156530 ATAATACTAA
Statistics
Matches: 412, Mismatches: 63, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
352 33 0.08
353 90 0.22
354 177 0.43
355 3 0.01
356 6 0.01
359 1 0.00
361 98 0.24
362 4 0.01
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (353 bp):
AAATCTATTTACCAAACAAGTTCAAATAGTTATGACTATTTGGACAATTATTTATTTCAAATCGT
TATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTATTTCAAATATAAAT
TTACTAATATTCCAACAATTAATAAGTAAAAGATGTAAAAAATAAATATGTTTACCGAACAAGTT
CAAATAATAATAACCATCTAAACAATTATCTATTTCAATTCGTTATGACCTTTTGTTTCACCATA
AACAATTATATCAATTCATAAAAGCTTATTTGAAATAAAATAATACTAACTTATTAAAATTCCAA
AAATTAATAAGTAAGAAATTTAAAAAAT
Found at i:156540 original size:354 final size:353
Alignment explanation
Indices: 155688--157068 Score: 942
Period size: 354 Copynumber: 3.9 Consensus size: 353
155678 AGCTTATTTC
* * ** * * **
155688 AAATCTATTTACCAAATAATTTTGAATAGTTATGATTATTGGAACAATTATTTATTTCAAATCGT
1 AAATCTATTTACCAAACAAGTTCAAATAATTATGACTATTTAAACAATTATTTATTTCAAATCGT
* * ** *
155753 TATGACCTTTTGTTTTGTCATAAAACAATTATTTTTTTTCATATTAGCTTATTTGGATT-AAAAT
66 TATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTATTC--A-TA-CAAAATT--ATTCAAAAT
* * * *
155817 AATATTAATTTATTAATATTTCAACAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACC
125 AA-AATAA--TACTAATATTCCAACAATTAATAAGTAAAAGATGTAAAAAATAAATATGTTTACC
* * *
155882 GAACAAGTTCAAATAGTAATAACTATCTAAATAATTATCTATTTCAATTCGTTATGACCTTTTGT
187 GAACAAGTTCAAATAATAATAACCATCTAAACAATTATCTATTTCAATTCGTTATGACCTTTTGT
* *
155947 TTCACCATAAACAATTATATCAATTCATATAGGCTTATTTGAAATAAAATAATACTAACTTATTA
252 TTCACCATAAACAATTATATCAATTCATAAAAGCTTATTTGAAATAAAATAATACTAACTTATTA
** * *
156012 CTATTCCAATAATTAATGAGTAAGAAATTTAAAAAAT
317 AAATTCCAAAAATTAATAAGTAAGAAATTTAAAAAAT
* * ** * *
156049 GAATCTATTTACCAAACAAGTTCAAATAGTTATGACTATTTGGACAATTATCTATTTCAAATTGT
1 AAATCTATTTACCAAACAAGTTCAAATAATTATGACTATTTAAACAATTATTTATTTCAAATCGT
* * **
156114 TATGACCTTTTGTTTTGCCATAAAACAATTGTTTTTGTTCATACAAGCTTATTTC-AAATATAAA
66 TATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAAATTA-TTCAAAATA-AAA
* * * * *** *
156178 T-TTACTAATATTCCAA-AGATTGATAAGTAAAA-ATGTATAAAATAAATTTGTTTTTTGAACAC
129 TAATACTAATATTCCAACA-ATTAATAAGTAAAAGATGTAAAAAATAAATATGTTTACCGAACAA
* * **
156240 GTTCAAAATAATAATAACCATTTGAACAATTATCTATTTCAAATT-GTTATGACCTTTTGTTTTG
193 GTTC-AAATAATAATAACCATCTAAACAATTATCTATTTC-AATTCGTTATGACCTTTTGTTTCA
* * * * *
156304 TCATAAACCAATTGTTTCTATTCATAAAAGCTTATTTGAAATAAAATAATACTAATTTATTAAAA
256 CCATAAA-CAATTATATCAATTCATAAAAGCTTATTTGAAATAAAATAATACTAACTTATTAAAA
*
156369 TTTCAAAAATTAATAAGTAA-AATATTTAAAAAAT
320 TTCCAAAAATTAATAAGTAAGAA-ATTTAAAAAAT
* * *** *
156403 AAATTTGTTTACCAAGTGAGTTCAAATAATTATGACTATTTAAATAATTATTTATTTCAAATCGT
1 AAATCTATTTACCAAACAAGTTCAAATAATTATGACTATTTAAACAATTATTTATTTCAAATCGT
* * * *
156468 TATGATCATTTGTTTTGTAATAAAACAATTGTTTCTATTCATACAAAATTATTCAAAATAAAATA
66 TATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAAATTATTCAAAATAAAATA
* * * * * * * * * *
156533 ATACTAATTTATT--AATATTTTGAAAATAAATAAGAGATTTAAAAATTATATTTGTTTATCGGA
131 ATACTAA--TATTCCAACA-ATT---AATAAGTAAAAGATGTAAAAAATAAATATGTTTACCGAA
* * * * * * *
156596 CTAA-TTCAAATAGTTATGACTAT-TAGAATAATTATCTATCTT-AAATCGGTATGA--TATTTG
190 C-AAGTTCAAATAATAATAACCATCTA-AACAATTATCTAT-TTCAATTCGTTATGACCT-TTTG
** * *** * * * * *
156656 TTTCGTCATAAAACAATTATTTTTGTCCATACAAA-CTTATTCGGAGTAAAATATTACTAAAC-T
251 TTTCACCAT-AAACAATTATATCAATTCATA-AAAGCTTATTTGAAATAAAATAATACT-AACTT
* * **
156719 AATAATATTTTAAAAATTAATAAG--AG--ATTTAAAAAAT
313 ATTAAAATTCCAAAAATTAATAAGTAAGAAATTTAAAAAAT
* **** * * * * * *
156756 AAATGTATTTGTTGAACCAGTTCAAATAGTTAAGACTA-TTATAATAATTATCTATTTCAAATCA
1 AAATCTATTTACCAAACAAGTTCAAATAATTATGACTATTTA-AACAATTATTTATTTCAAATCG
* * * * * * ***
156820 TTCTGACATTTTTTTTTAGTCATAAAATAATTG--TTCAGTTCATATATGCTTATTCAAAATAAA
65 TTATGACCTTTTGTTTT-GTCATAAAACAATTGTTTTTA-TTCATACAAAATTATTCAAAATAAA
* * * * * *
156883 ATAATATTATTTTATTAAAATTCAAAAAATTAATAAG-CAAGGAAT-TAAAAAATAAATTTGTTT
128 ATAATACTA----A-T---ATTCCAACAATTAATAAGTAAAAG-ATGTAAAAAATAAATATGTTT
* * * * * * * * *
156946 ACCGAATAAGTTTAAATAGTTATGACTATTTAAACAATTATC-ATTTTAAAATCGTTATGACCTT
184 ACCGAACAAGTTCAAATAATAATAACCATCTAAACAATTATCTA-TTTCAATTCGTTATGACCTT
* * * * * ***
157010 TTGTTTTATCATAAAACAATTGTTTCATTTCATAAAAGCTTATCCAAAATAAAATAATA
248 TTGTTTCACCAT-AAACAATTATATCAATTCATAAAAGCTTATTTGAAATAAAATAATA
157069 TTACTTTATC
Statistics
Matches: 818, Mismatches: 156, Indels: 96
0.76 0.15 0.09
Matches are distributed among these distances:
352 33 0.04
353 186 0.23
354 203 0.25
355 10 0.01
356 80 0.10
357 129 0.16
358 49 0.06
359 30 0.04
360 3 0.00
361 95 0.12
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.41
Consensus pattern (353 bp):
AAATCTATTTACCAAACAAGTTCAAATAATTATGACTATTTAAACAATTATTTATTTCAAATCGT
TATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAAATTATTCAAAATAAAATA
ATACTAATATTCCAACAATTAATAAGTAAAAGATGTAAAAAATAAATATGTTTACCGAACAAGTT
CAAATAATAATAACCATCTAAACAATTATCTATTTCAATTCGTTATGACCTTTTGTTTCACCATA
AACAATTATATCAATTCATAAAAGCTTATTTGAAATAAAATAATACTAACTTATTAAAATTCCAA
AAATTAATAAGTAAGAAATTTAAAAAAT
Found at i:156743 original size:176 final size:176
Alignment explanation
Indices: 156267--156818 Score: 500
Period size: 176 Copynumber: 3.1 Consensus size: 176
156257 CCATTTGAAC
* * * * * * * * *
156267 AATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAACCAATTGTTTCTATTCATA-A
1 AATTATCTATTTCAAATCGGTATGATCATTTGTTTCGTAATAAAACAATTATTTCTATCCATACA
* ** ** * * * * *
156331 AAGCTTATTTGAAATAAAATAATACTAATTTATTAAAATTTCAAAAATTAATAAGTAAAATATTT
66 AA-ATTATTCAAAATAAAATAATACTAAACTAATAATATTTTAAAAA-T-A-AA-TAAGAGATTT
* * * ** * *
156396 AAAAAATAAATTTGTTTA-CCAAGTGAGTTCAAATAATTATGACTATTTAAAT
126 AAAAAATAAATGTATTTATCGAA-CCAATTCAAATAGTTATGACTA-TTAAAT
* * * * *
156448 AATTATTTATTTCAAATCGTTATGATCATTTGTTTTGTAATAAAACAATTGTTTCTATTCATACA
1 AATTATCTATTTCAAATCGGTATGATCATTTGTTTCGTAATAAAACAATTATTTCTATCCATACA
** * *
156513 AAATTATTCAAAATAAAATAATACTAATTTATTAATATTTTGAAAATAAATAAGAGATTTAAAAA
66 AAATTATTCAAAATAAAATAATACTAAACTAATAATATTTTAAAAATAAATAAGAGATTTAAAAA
* * * * * *
156578 TTATATTTGTTTATCGGACTAATTCAAATAGTTATGACTATTAGAAT
131 ATAAATGTATTTATCGAACCAATTCAAATAGTTATGACTATTA-AAT
* * *
156625 AATTATCTATCTT-AAATCGGTATGAT-ATTTGTTTCGTCATAAAACAATTATTTTTGTCCATAC
1 AATTATCTAT-TTCAAATCGGTATGATCATTTGTTTCGTAATAAAACAATTATTTCTATCCATAC
* ** * * *
156688 AAACTTATTCGGAGTAAAATATTACTAAACTAATAATATTTTAAAAATTAATAAGAGATTTAAAA
65 AAAATTATTCAAAATAAAATAATACTAAACTAATAATATTTTAAAAATAAATAAGAGATTTAAAA
* * * *
156753 AATAAATGTATTTGTTGAACCAGTTCAAATAGTTAAGACTATTATAAT
130 AATAAATGTATTTATCGAACCAATTCAAATAGTTATGACTATTA-AAT
156801 AATTATCTATTTCAAATC
1 AATTATCTATTTCAAATC
156819 ATTCTGACAT
Statistics
Matches: 315, Mismatches: 51, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
175 2 0.01
176 141 0.45
177 66 0.21
178 6 0.02
179 1 0.00
180 1 0.00
181 95 0.30
182 3 0.01
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (176 bp):
AATTATCTATTTCAAATCGGTATGATCATTTGTTTCGTAATAAAACAATTATTTCTATCCATACA
AAATTATTCAAAATAAAATAATACTAAACTAATAATATTTTAAAAATAAATAAGAGATTTAAAAA
ATAAATGTATTTATCGAACCAATTCAAATAGTTATGACTATTAAAT
Found at i:156807 original size:534 final size:529
Alignment explanation
Indices: 155729--157086 Score: 1435
Period size: 534 Copynumber: 2.5 Consensus size: 529
155719 ATGATTATTG
* * * *
155729 GAACAATTATTTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTTTTCA
1 GAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCA
* * * * *
155794 TATTAGCTTATTTGGATTAAAATAATATTAATTTATTAATATTTCAACAATTAATAAGTAAAAGA
66 TATAAGCTTATTTGAAATAAAATAATATTAATTTATTAAAATTTCAAAAATTAATAAGTAAAA-A
* * * * * *
155859 TTTAAAAAATAAATATGTTTACCGAACAAGTTCAAATAGTAATAACTATCTAAATAATTATCTAT
130 TTTAAAAAATAAATTTGTTTACCGAATAAGTTCAAATAGTTATGACTATTTAAATAATTATTTAT
* * * * * ** **
155924 TTCAATTCGTTATGACCTTTTGTTTCACCAT-AAACAATTATATCAATTCATATAGGCTTATTTG
195 TTCAAATCGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTC-ATTCATA-AAACTTATTCA
* *
155988 AAATAAAATAATACTAACTTATTACTA-TTCCAATAATTAATGAGTAAGAAATTTAAAAAATGAA
258 AAATAAAATAATACTAATTTATTAATATTTCCAATAATTAA-GAGTAAGAAATTTAAAAAATGAA
* * * *
156052 TCTATTTACCAAACAAGTTCAAATAGTTATGACTATTTGGACAATTATCTATTTCAAATTGTTAT
322 TCTATTTACCAAACAAGTTCAAATAGTTATGACTATTAGAACAATTATCTATTTCAAATCGGTAT
* * * * * **
156117 GACCTTTTGTTTTGCCATAAAACAATTGTTTTTGTTCATACAAGCTTATTTCAAATATAAATTTA
387 GA-CTTTTGTTTCGCCATAAAACAATTATTTTTGTCCATACAAACTTATTTAAAATATAAAACTA
* * * * * * *
156182 CTAATATTCCAAAGATTGATAAGTAAAAATGTATAAAATAAATTTGTTTTTTGAACACGTTCAAA
451 ATAATATTCCAAAAATTAATAAG--AAAATGTAAAAAATAAATGTATTTGTTGAACACGTTCAAA
156247 ATAATAATAACCATTT
514 ATAATAATAACCATTT
* *
156263 GAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAACCAATTGTTTCTATTCA
1 GAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCA
* *
156328 TAAAAGCTTATTTGAAATAAAATAATACTAATTTATTAAAATTTCAAAAATTAATAAGTAAAATA
66 TATAAGCTTATTTGAAATAAAATAATATTAATTTATTAAAATTTCAAAAATTAATAAGTAAAA-A
* *
156393 TTTAAAAAATAAATTTGTTTACC-AAGTGAGTTCAAATAATTATGACTATTTAAATAATTATTTA
130 TTTAAAAAATAAATTTGTTTACCGAA-TAAGTTCAAATAGTTATGACTATTTAAATAATTATTTA
* * * * *
156457 TTTCAAATCGTTATGATCATTTGTTTTGTAATAAAACAATTGTTTCTATTCATACAAAATTATTC
194 TTTCAAATCGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTC-ATTCATA-AAACTTATTC
** * *
156522 AAAATAAAATAATACTAATTTATTAATATTTTGAA-AA-TAA-A-TAAGAGATTT-AAAAATTAT
257 AAAATAAAATAATACTAATTTATTAATATTTCCAATAATTAAGAGTAAGAAATTTAAAAAATGA-
* * * ** *
156582 ATTTGTTTATCGGACTAA-TTCAAATAGTTATGACTATTAGAATAATTATCTATCTT-AAATCGG
321 ATCTATTTACCAAAC-AAGTTCAAATAGTTATGACTATTAGAACAATTATCTAT-TTCAAATCGG
*
156645 TATGA-TATTTGTTTCGTCATAAAACAATTATTTTTGTCCATACAAACTTATTCGGAGTAAAATA
384 TATGACT-TTTGTTTCGCCATAAAACAATTATTTTTGTCCATACAAACTTATT-----TAAAATA
** * *
156709 TTACTAAACTAATAATATTTTAAAAATTAATAAG-AGATTTAAAAAATAAATGTATTTGTTGAAC
443 -TA--AAACTAATAATATTCCAAAAATTAATAAGAAAATGTAAAAAATAAATGTATTTGTTGAAC
* * *
156773 -CAGTTC-AAATAGTTAA-GACTATTAT
505 AC-GTTCAAAATA-ATAATAACCATT-T
* * * * * *
156798 -AATAATTATCTATTTCAAATCATTCTGACATTTTTTTTTAGTCATAAAATAATTG-TTC-AGTT
1 GAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTT-GTCATAAAACAATTGTTTCTA-TT
* ** * *
156860 CATATATGCTTATTCAAAATAAAATAATATTATTTTATTAAAA-TTCAAAAAATTAATAAGCAAG
64 CATATAAGCTTATTTGAAATAAAATAATATTAATTTATTAAAATTTC-AAAAATTAATAAGTAA-
* * *
156924 GAA-TTAAAAAATAAATTTGTTTACCGAATAAGTTTAAATAGTTATGACTATTTAAACAATTA-T
127 AAATTTAAAAAATAAATTTGTTTACCGAATAAGTTCAAATAGTTATGACTATTTAAATAATTATT
* *
156987 CATTTTAAAATCGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCATTTCATAAAAGCTTA
192 TA-TTTCAAATCGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCA-TTCATAAAA-CTTA
* * * *
157052 TCCAAAATAAAATAATATTACTTTATCAATATTTC
254 TTCAAAATAAAATAATACTAATTTATTAATATTTC
157087 AAAAATTGAG
Statistics
Matches: 690, Mismatches: 108, Indels: 53
0.81 0.13 0.06
Matches are distributed among these distances:
529 1 0.00
530 47 0.07
531 61 0.09
532 11 0.02
533 138 0.20
534 301 0.44
535 103 0.15
536 6 0.01
538 22 0.03
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (529 bp):
GAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCA
TATAAGCTTATTTGAAATAAAATAATATTAATTTATTAAAATTTCAAAAATTAATAAGTAAAAAT
TTAAAAAATAAATTTGTTTACCGAATAAGTTCAAATAGTTATGACTATTTAAATAATTATTTATT
TCAAATCGTTATGACCTTTTGTTTTATCATAAAACAATTGTTTCATTCATAAAACTTATTCAAAA
TAAAATAATACTAATTTATTAATATTTCCAATAATTAAGAGTAAGAAATTTAAAAAATGAATCTA
TTTACCAAACAAGTTCAAATAGTTATGACTATTAGAACAATTATCTATTTCAAATCGGTATGACT
TTTGTTTCGCCATAAAACAATTATTTTTGTCCATACAAACTTATTTAAAATATAAAACTAATAAT
ATTCCAAAAATTAATAAGAAAATGTAAAAAATAAATGTATTTGTTGAACACGTTCAAAATAATAA
TAACCATTT
Found at i:157101 original size:36 final size:36
Alignment explanation
Indices: 157061--157134 Score: 121
Period size: 36 Copynumber: 2.1 Consensus size: 36
157051 ATCCAAAATA
*
157061 AAATAATATTACTTTATCAATATTTCAAAAATTGAG
1 AAATAATATTACTTTATCAATATTTCAAAAATTAAG
* *
157097 AAATAATATTACTTTATTATTATTTCAAAAATTAAG
1 AAATAATATTACTTTATCAATATTTCAAAAATTAAG
157133 AA
1 AA
157135 GTTGTAGATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.41
Consensus pattern (36 bp):
AAATAATATTACTTTATCAATATTTCAAAAATTAAG
Found at i:157482 original size:171 final size:171
Alignment explanation
Indices: 157171--157486 Score: 386
Period size: 171 Copynumber: 1.8 Consensus size: 171
157161 TTATCGAATC
* * * * * *
157171 AGTTTAAATACTTATGGCCATTTGAACAATTATCTATTTCAAATCATTTTGAACTTTTGTTTTGT
1 AGTTCAAATAATTATGACCATTTAAACAATTATATATTTCAAATCATTATGAACTTTTGTTTTGT
* * * * * * *
157236 CATAAAACAATTGTTTTTCATCACACAAGCCTAATTAGAATAAAATAATACTAGTTTATTAATAT
66 CATAAAACAATTATTTATCATCACACAAGCCTAATTAAAAGAAAATAATACTAATCTAATAATAT
157301 TTCAAAAATTAATAAGTAGGAGATTATCTATTTACTGAACT
131 TTCAAAAATTAATAAGTAGGAGATTATCTATTTACTGAACT
* *
157342 AGTTCAAATAATTATGACTATTTAAACAATTATATATTTCAAGTCATTAT-AACTTTTTGTTTTG
1 AGTTCAAATAATTATGACCATTTAAACAATTATATATTTCAAATCATTATGAAC-TTTTGTTTTG
** * * * *
157406 TCATAAAACAATTATTTATGTTCATA-TAGGCTTATTCAAAAGAAAATAATACTAATCTAATAAT
65 TCATAAAACAATTATTTATCATCACACAAGCCTAATT-AAAAGAAAATAATACTAATCTAATAAT
*
157470 ATTAT-GAAAATTAATAA
129 ATT-TCAAAAATTAATAA
157487 TTAATAGATT
Statistics
Matches: 120, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
170 10 0.08
171 109 0.91
172 1 0.01
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.41
Consensus pattern (171 bp):
AGTTCAAATAATTATGACCATTTAAACAATTATATATTTCAAATCATTATGAACTTTTGTTTTGT
CATAAAACAATTATTTATCATCACACAAGCCTAATTAAAAGAAAATAATACTAATCTAATAATAT
TTCAAAAATTAATAAGTAGGAGATTATCTATTTACTGAACT
Found at i:158247 original size:13 final size:13
Alignment explanation
Indices: 158224--158273 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
158214 AATTTATTAA
*
158224 AATATAATAAATT
1 AATATATTAAATT
*
158237 CATATATTAAATT
1 AATATATTAAATT
158250 AATA-ATT-AATT
1 AATATATTAAATT
*
158261 AATTTTATTAAAT
1 AA-TATATTAAAT
158274 ATTAACTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
11 6 0.20
12 4 0.13
13 17 0.57
14 3 0.10
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (13 bp):
AATATATTAAATT
Found at i:158469 original size:17 final size:18
Alignment explanation
Indices: 158444--158477 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
158434 ATTAAATATT
158444 ATTTAATATATAATAAAA
1 ATTTAATATATAATAAAA
*
158462 ATTT-ATATTTAATAAA
1 ATTTAATATATAATAAA
158478 TTAATAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTTAATATATAATAAAA
Found at i:158601 original size:22 final size:20
Alignment explanation
Indices: 158567--158608 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
158557 TTATTTAATT
158567 TTAATAATCAATTTAAAATATA
1 TTAATAATCAA-TT-AAATATA
158589 TTAATAGAT-AATTAAATATA
1 TTAATA-ATCAATTAAATATA
158609 ATACAAGCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 7 0.37
21 2 0.11
22 8 0.42
23 2 0.11
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
TTAATAATCAATTAAATATA
Found at i:158692 original size:23 final size:23
Alignment explanation
Indices: 158666--158745 Score: 81
Period size: 23 Copynumber: 3.4 Consensus size: 23
158656 AAACTATTGC
*
158666 AATTATTTAAATTAAAAATAATT
1 AATTAATTAAATTAAAAATAATT
* *
158689 AATTAAGTAAA-TAGATAATAATT
1 AATTAATTAAATTA-AAAATAATT
* *
158712 AATTAATTAAATATAAAACTAAAT
1 AATTAATTAAAT-TAAAAATAATT
158736 AATTATATTA
1 AATTA-ATTA
158746 TTATAAATAT
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
22 2 0.04
23 27 0.59
24 11 0.24
25 6 0.13
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (23 bp):
AATTAATTAAATTAAAAATAATT
Found at i:158888 original size:21 final size:20
Alignment explanation
Indices: 158841--158889 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 20
158831 TATTAGGATA
*
158841 ATTTTAATCTATTATAATTT
1 ATTTTAATCAATTATAATTT
158861 A-TTTAAT-AATTATAATTAAT
1 ATTTTAATCAATTATAATT--T
158881 ATTTTAATC
1 ATTTTAATC
158890 TTTATTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 9 0.38
19 6 0.25
20 3 0.12
21 6 0.25
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTTTAATCAATTATAATTT
Found at i:159217 original size:19 final size:19
Alignment explanation
Indices: 159195--159233 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
159185 TTCAATAGCC
*
159195 ATTAATA-ATATTGTTAATT
1 ATTAATACA-ATTATTAATT
159214 ATTAATACAATTATTAATT
1 ATTAATACAATTATTAATT
159233 A
1 A
159234 ATGATTCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (19 bp):
ATTAATACAATTATTAATT
Found at i:160070 original size:181 final size:177
Alignment explanation
Indices: 159489--161750 Score: 1528
Period size: 181 Copynumber: 12.6 Consensus size: 177
159479 TTACTATCTC
* * * **
159489 GAATAGAAAAAATTATTTTATGACAAAACAAAAGATCATAACAATTTGAAATAAATAATTATTCA
1 GAAT-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTCA
* * * *
159554 AATAGTCATAACTATTTGAACTTGCTCGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAG
65 AATAGTCATAACTATTTGAACTTGTTCGGTAAACATATTTATTTTTT-AAT-TCTTACTTATTAA
* * * *
159619 TTTTTGGAATTTTAATAAATTAGTACTATTTTATTTCAAAAAAGCTTTTAT
128 TTTTTGGAATATTAATAAATTAGTATTATTTTA-TTCAAATAAGCTTATAT
* * * * * *
159670 GACTAGAAACAATTGGTTCATGACAAAATAAAAGGTCATAACGATTTGAAATAAATAATTCTTCA
1 GAAT-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTCA
* * * *
159735 AATAGTCATAACTATTTGAACGTGTCCAGAAAACATATTTATTTTTTAAAATT-TTACTTATTAA
65 AATAGTCATAACTATTTGAACTTGTTCGGTAAACATATTTATTTTTT--AATTCTTACTTATTAA
* **
159799 TTTTTGGAATATTAATAAATTTA-AATTATTTTATTCGAAATAAGCTTGCAT
128 TTTTTGGAATATTAATAAA-TTAGTATTATTTTATTC-AAATAAGCTTATAT
* * * *
159850 GAA-CAAAGCCAATTGTTTTATGACAAAACAAAAGGTCATAATGTTTTGAAATAGATAATTGTTC
1 GAATGAAA--CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTC
* * * * * * *
159914 AGATAATCACAACTATTTGAATTTATTTGGTAAACATATTCT-TTTTTTAATTCTCTCACTCATT
64 AAATAGTCATAACTATTTGAACTTGTTCGGTAAACATATT-TATTTTTTAATTCT-T-ACTTATT
* * *
159978 AATTTTTGGACTATTAATAAATTAGTATTGTCTTACTTCAAATAAGCTTATAT
126 AATTTTTGGAATATTAATAAATTAGTATTATTTTA-TTCAAATAAGCTTATAT
* * * * * * *
160031 GAATTGAAACAAGTGTTTTATTAGAAAAGAAATGGTCATAATGATTTGAAATAGATAATTATTGA
1 GAA-TGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTCA
* * * * * * * *
160096 AATATTAATGACTATTTTAACTGGTTTGGTAAATATATTTATTTTTTAAATCTTTTACTTATTAA
65 AATAGTCATAACTATTTGAACTTGTTCGGTAAACATATTTATTTTTT-AAT-TCTTACTTATTAA
* *** * * * * * * *
160161 TTGTCAAAATATTAATTAGTTAATATTATTTTAATTCGAATAAACATGTAT
128 TTTTTGGAATATTAATAAATTAGTATTATTTT-ATTCAAATAAGCTTATAT
* * * ** * *
160212 GAATAGAAATAATTATTTTATGACAAAATAAAAAATCATAA-CATGTTGAAATAAATAATTACTC
1 GAAT-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGAT-TTGAAATAAATAATTATTC
* * * * * * *
160276 AAATAGCCATAA-TGATTAGAACGTGTTCGATAAACAGATTTATTTTTAAATCTTTTACTTATTA
64 AAATAGTCATAACT-ATTTGAACTTGTTCGGTAAACATATTTATTTTTTAAT-TCTTACTTATTA
* *
160340 ATTGTCTT--AATATTAATAAATTTGTATTATTTTATTCAAAATAAGCTTAGAT
127 ATT-T-TTGGAATATTAATAAATTAGTATTATTTTATTC-AAATAAGCTTATAT
* * * * * * * *
160392 GAATAGAAAAAATTCTTTTATTACAAAACAAAAAGTTAT-AGGTATTTCAAATAGATAATTATTC
1 GAAT-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAATG-ATTTGAAATAAATAATTATTC
* * * * ** * * *
160456 AAATAGTCCTAATTATTTAAATTTGTTTAGTAAACAAAGTCATTTTTTAAATCTCTTTA-TTATT
64 AAATAGTCATAACTATTTGAACTTGTTCGGTAAACATATTTATTTTTT-AAT-TC-TTACTTATT
* ** *
160520 AATTTTTGGATTATTAATAAATTAGTATTATTTTATTTTGAATAAGGTTATAT
126 AATTTTTGGAATATTAATAAATTAGTATTATTTTA-TTCAAATAAGCTTATAT
* * * * * *
160573 GAACTAAAACAACTCTTTTATGACAAATCAAAAGGTCATAACGATTTGAAATAGATAATTATTCA
1 GAA-TGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTCA
* * * * * ** * *
160638 AATTGTCATGATTATTTGATCTAGTGT-GGT-AACATA--T-TTTTAAAATTTTTTACTTACTAA
65 AATAGTCATAACTATTTGAACTTGT-TCGGTAAACATATTTATTTTTTAA-TTCTTACTTATTAA
* *** * * * *
160698 TTGTCAAAATATTAATAAATTAGTGTTATTTTAATACAAATAAGATTGTAT
128 TTTTTGGAATATTAATAAATTAGTATTATTTT-ATTCAAATAAGCTTATAT
** * **
160749 GAATAGAAACAATTGTTTTACAACAAAACAAAAAGTCATAATGATTTGAAATAAATAATTGCTCA
1 GAAT-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTCA
* * * * * * * * * * *
160814 AATAGTCATAACTATTTAAACTAGTTTGATACATAGATTTATTGTCTAAATC--ATTTATTAATT
65 AATAGTCATAACTATTTGAACTTGTTCGGTAAACATATTTATTTTTTAATTCTTACTTATTAATT
* * * *
160877 TTTGAAATATTAATAGATTAGTATTACTTTATTTCAAATAAACTTATAT
130 TTTGGAATATTAATAAATTAGTATTATTTTA-TTCAAATAAGCTTATAT
* * * * * * * * *
160926 GAATAAAAACATTTGTTGTATGACAAAACAAAAAGTAATAAGGATTTGAAATATACAATTGTTCA
1 GAAT-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTCA
* * * * * * * * *
160991 AATAGT-ATAATTTTTTGAGCTGGTTAGGTAAATAAAATTATTTTTTAAATCTCTTACTTATTAT
65 AATAGTCATAACTATTTGAACTTGTTCGGTAAACATATTTATTTTTT-AAT-TCTTACTTATTAA
* * **
161055 TTTTTGAAATATTAATAAATTCA-TTTTATTTTATTTTGAATAAGC-TAGTAT
128 TTTTTGGAATATTAATAAATT-AGTATTATTTTA-TTCAAATAAGCTTA-TAT
* **
161106 GAATTGAGAA-AATTGTTTTATGACAAGACAAAAGGTCATAATGATTTGAAATAGAA-AATCGTT
1 GAA-TGA-AACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATA-AATAATTATT
* * * * * * * *
161169 CATATAGTCTTAACTATTTGAAATGGTTCGGCAAACAAATTTATTTTTTAAATCCCTTAATTATT
63 CAAATAGTCATAACTATTTGAACTTGTTCGGTAAACATATTTATTTTTT-AAT-TCTTACTTATT
* * * ** * *
161234 AATTTTTGGAATATTATTAGATTAGTATTGTTTTATTTTGATTAAGCTTGTAT
126 AATTTTTGGAATATTAATAAATTAGTATTATTTTA-TTCAAATAAGCTTATAT
* ** * * * * * * * * *
161287 AAACAAAAATAATTGTTTTGTGACATAACAAAAGATTATAATGATTTGAAGTATAGAATTGTTCA
1 GAA-TGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTCA
* * * *
161352 AATAGCCATAACTATTTGAACTGGTTCGGTAAACATATTCATTTTTTAAATC-T-CTTATTAATT
65 AATAGTCATAACTATTTGAACTTGTTCGGTAAACATATTTATTTTTTAATTCTTACTTATTAATT
* * * * *
161415 TTT-GACAGATTAATAAATTATTATTATTTTATTTCAAATAATCATGTAT
130 TTTGGA-ATATTAATAAATTAGTATTATTTTA-TTCAAATAAGCTTATAT
** * * * ** * * ** *
161464 GATAAAAAACAATTGTTATATGACCAAACAAAAGGTGATAGCGATTTGAAATAGATAGTTGCTGA
1 GA-ATGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTCA
* * ** ** * * * * * *
161529 AAT-GATCATAATTATTTAAACTAATTTTGCAAATAGATTCACTTTTTAAATCACTTACTTATTA
65 AATAG-TCATAACTATTTGAACTTGTTCGGTAAACATATTTA-TTTTTTAAT-TCTTACTTATTA
* ** *
161593 ATTTTTGGAATATTAATAAATTAGAATTATTTTATTTTGAATAAGCTTGTAT
127 ATTTTTGGAATATTAATAAATTAGTATTATTTTA-TTCAAATAAGCTTATAT
* * * * * * *
161645 GAACTAAAACAATTATTTTATGAC--AA-AAAA--TCATAATGATTTTAAATAGA-CATTGTTTA
1 GAA-TGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTCA
* * * * * * *
161704 AATAGTCGTAACTATCTAAATTTGCTCGATAAACAAATTTATTTTTT
65 AATAGTCATAACTATTTGAACTTGTTCGGTAAACATATTTATTTTTT
161751 TAAACTCCTG
Statistics
Matches: 1638, Mismatches: 375, Indels: 143
0.76 0.17 0.07
Matches are distributed among these distances:
174 5 0.00
175 35 0.02
176 170 0.10
177 239 0.15
178 22 0.01
179 19 0.01
180 393 0.24
181 725 0.44
182 25 0.02
183 5 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (177 bp):
GAATGAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTATTCAA
ATAGTCATAACTATTTGAACTTGTTCGGTAAACATATTTATTTTTTAATTCTTACTTATTAATTT
TTGGAATATTAATAAATTAGTATTATTTTATTCAAATAAGCTTATAT
Found at i:160324 original size:361 final size:358
Alignment explanation
Indices: 159489--161520 Score: 1263
Period size: 361 Copynumber: 5.7 Consensus size: 358
159479 TTACTATCTC
159489 GAATAGAAAAAATTATTTTATGACAAAACAAAAGATCATAACAATTTGAAATAAATAATTATTCA
1 GAATAGAAAAAATTATTTTATGACAAAACAAAAGATCATAAC-ATTTGAAATAAATAATTATTCA
* *
159554 AATAGTCATAACTATTTGAACTTGCTCGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAG
65 AATAGTCATAACTATTTGAACTTGTTCGGTAAACAGATTTA-TTTTTAAATCTTTTACTTATTAA
* * * * *
159619 TTTTTGGAATTTTAATAAATTAGTACTATTTTATTTCAAAAAAGCTTTTATGACTAGAAACAATT
129 TTTTTGGAATATTAATAAATTAGTATTATTTTA-TTCAAATAAGCTTATATGAATAGAAACAATT
* * * * * * *
159684 GGTTCATGACAAAATAAAAGGTCATAACGATTTGAAATAAATAATTCTTCAAATAGTCATAACTA
193 GTTTTATTACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTAATAACTA
* ***
159749 TTTGAACGTGTCCAGAAAACATATTTATTTTTTAAAATTTTACTTATTAATTTTTGGAATATTAA
258 TTTGAACGTGTCCAGAAAACATATTTATTTTTTAAAATTTTACTTATTAATTGTCAAAATATTAA
* * *
159814 TAAATTTAAATTATTTTATTCGAAATAAGCTTGCAT
323 TAAAGTTAAATTATTTTATTCGAAATAAACATGCAT
* ** * * ** * *
159850 GAACA-AAGCCAATTGTTTTATGACAAAACAAAAGGTCATAATGTTTTGAAATAGATAATTGTTC
1 GAATAGAA-AAAATTATTTTATGACAAAACAAAAGATCATAA-CATTTGAAATAAATAATTATTC
* * * * * * * * * * * *
159914 AGATAATCACAACTATTTGAATTTATTTGGTAAACATATTCTTTTTTTAATTCTCTCACTCATTA
64 AAATAGTCATAACTATTTGAACTTGTTCGGTAAACAGATT-TATTTTTAAATCTTTTACTTATTA
* * * * *
159979 ATTTTTGGACTATTAATAAATTAGTATTGTCTTACTTCAAATAAGCTTATATGAATTGAAACAAG
128 ATTTTTGGAATATTAATAAATTAGTATTATTTTA-TTCAAATAAGCTTATATGAATAGAAACAAT
* * * * * * *
160044 TGTTTTATTAGAAAAGAAATGGTCATAATGATTTGAAATAGATAATTATTGAAATATTAATGACT
192 TGTTTTATTACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTAATAACT
* *** * * *
160109 ATTTTAAC-TGGTTTGGTAAATATATTTATTTTTTAAATCTTTTACTTATTAATTGTCAAAATAT
257 ATTTGAACGT-GTCCAGAAAACATATTTATTTTTTAAA-ATTTTACTTATTAATTGTCAAAATAT
* *
160173 TAAT-TAGTTAATATTATTTTAATTCG-AATAAACATGTAT
320 TAATAAAGTTAA-ATTATTTT-ATTCGAAATAAACATGCAT
* * * *
160212 GAATAGAAATAATTATTTTATGACAAAATAAAAAATCATAACATGTTGAAATAAATAATTACTCA
1 GAATAGAAAAAATTATTTTATGACAAAACAAAAGATCATAACAT-TTGAAATAAATAATTATTCA
* * * *
160277 AATAGCCATAA-TGATTAGAACGTGTTCGATAAACAGATTTATTTTTAAATCTTTTACTTATTAA
65 AATAGTCATAACT-ATTTGAACTTGTTCGGTAAACAGATTTATTTTTAAATCTTTTACTTATTAA
* * *
160341 TTGTCTT--AATATTAATAAATTTGTATTATTTTATTCAAAATAAGCTTAGATGAATAGAAAAAA
129 TT-T-TTGGAATATTAATAAATTAGTATTATTTTATTC-AAATAAGCTTATATGAATAGAAACAA
* * * * * **
160404 TTCTTTTATTACAAAACAAAAAGTTAT-AGGTATTTCAAATAGATAATTATTCAAATAGTCCTAA
191 TTGTTTTATTACAAAACAAAAGGTCATAACG-ATTTGAAATAGATAATTATTCAAATAGTAATAA
* * ** ** * * * * * * *** *
160468 TTATTTAAATTTGTTTAGTAAACAAAGTCATTTTTTAAATCTCTTTA-TTATTAATTTTTGGATT
255 CTATTTGAACGTGTCCAGAAAACATATTTATTTTTTAAA-AT-TTTACTTATTAATTGTCAAAAT
* * *** **
160532 ATTAATAAA-TTAGTATTATTTTATTTTG-AATAAGGTTATAT
318 ATTAATAAAGTTA-AATTATTTTA-TTCGAAATAAACATGCAT
* * * * * *
160573 GAACTA-AAACAACTCTTTTATGACAAATCAAAAGGTCATAACGATTTGAAATAGATAATTATTC
1 GAA-TAGAAAAAATTATTTTATGACAAAACAAAAGATCATAAC-ATTTGAAATAAATAATTATTC
* * * * * * *
160637 AAATTGTCATGATTATTTGATCTAGTGT-GGT-AAC--A--TATTTTTAAAATTTTTTACTTACT
64 AAATAGTCATAACTATTTGAACTTGT-TCGGTAAACAGATTTATTTTT-AAATCTTTTACTTATT
* *** * * * *
160696 AATTGTCAAAATATTAATAAATTAGTGTTATTTTAATACAAATAAGATTGTATGAATAGAAACAA
127 AATTTTTGGAATATTAATAAATTAGTATTATTTT-ATTCAAATAAGCTTATATGAATAGAAACAA
** * * * ** *
160761 TTGTTTTACAACAAAACAAAAAGTCATAATGATTTGAAATAAATAATTGCTCAAATAGTCATAAC
191 TTGTTTTATTACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTAATAAC
* ** * * * * * * **
160826 TATTTAAAC-TAGT-TTG-ATACATAGATTTATTGTCT-AAA--TCATTTATTAATTTTTGAAAT
256 TATTTGAACGT-GTCCAGAAAACAT--ATTTATTTTTTAAAATTTTACTTATTAATTGTCAAAAT
* * * * **
160885 ATTAATAGA-TTAGTATTACTTTATTTC-AAATAAACTTATAT
318 ATTAATAAAGTTA-AATTATTTTA-TTCGAAATAAACATGCAT
* * * * * *
160926 GAATA-AAAACATT-TGTTGTATGACAAAACAAAA-AGTAATAAGGATTTGAAATATACAATTGT
1 GAATAGAAAAAATTAT-TT-TATGACAAAACAAAAGA-TCATAA-CATTTGAAATAAATAATTAT
* * * * * * * * *
160988 TCAAATAGT-ATAATTTTTTGAGCTGGTTAGGTAAATAAAATTATTTTTTAAATCTCTTACTTAT
62 TCAAATAGTCATAACTATTTGAACTTGTTCGGTAAACAGATTTA-TTTTTAAATCTTTTACTTAT
* * * ** *
161052 TATTTTTTGAAATATTAATAAATTCA-TTTTATTTTATTTTGAATAAGC-TAGTATGAATTGAGA
126 TAATTTTTGGAATATTAATAAATT-AGTATTATTTTA-TTCAAATAAGCTTA-TATGAATAGA-A
* * * * ** * **
161115 A-AATTGTTTTATGACAAGACAAAAGGTCATAATGATTTGAAATAGAAAATCGTTCATATAGTCT
187 ACAATTGTTTTATTACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTAA
* * * * * * * * **
161179 TAACTATTTGAA-ATGGTTCGGCAAACAAATTTATTTTTT-AAATCCCTTAATTATTAATTTTTG
252 TAACTATTTGAACGT-GTCCAGAAAACATATTTATTTTTTAAAAT--TTTACTTATTAATTGTCA
* * * * * * * * * *
161242 GAATATTATTAGA-TTAGTATTGTTTTATTTTG-ATTAAGCTTGTAT
314 AAATATTAATAAAGTTA-AATTATTTTA-TTCGAAATAAACATGCAT
* * * * * * * * * * *
161287 AAACA-AAAATAATTGTTTTGTGACATAACAAAAGATTATAATGATTTGAAGTATAGAATTGTTC
1 GAATAGAAAA-AATTATTTTATGACAAAACAAAAGATCATAA-CATTTGAAATAAATAATTATTC
* * * *
161351 AAATAGCCATAACTATTTGAACTGGTTCGGTAAACATATTCATTTTTTAAATC---T-CTTATTA
64 AAATAGTCATAACTATTTGAACTTGTTCGGTAAACAGATTTA-TTTTTAAATCTTTTACTTATTA
* * * * * *
161412 ATTTTT-GACAGATTAATAAATTATTATTATTTTATTTCAAATAATCATGTATG-ATAAAAAACA
128 ATTTTTGGA-ATATTAATAAATTAGTATTATTTTA-TTCAAATAAGCTTATATGAAT-AGAAACA
* * * * *
161475 ATTGTTATATGACCAAACAAAAGGTGATAGCGATTTGAAATAGATA
190 ATTGTTTTATTACAAAACAAAAGGTCATAACGATTTGAAATAGATA
161521 GTTGCTGAAA
Statistics
Matches: 1325, Mismatches: 281, Indels: 133
0.76 0.16 0.08
Matches are distributed among these distances:
351 2 0.00
352 28 0.02
353 98 0.07
355 6 0.00
356 14 0.01
357 274 0.21
358 102 0.08
359 6 0.00
360 12 0.01
361 599 0.45
362 174 0.13
363 10 0.01
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (358 bp):
GAATAGAAAAAATTATTTTATGACAAAACAAAAGATCATAACATTTGAAATAAATAATTATTCAA
ATAGTCATAACTATTTGAACTTGTTCGGTAAACAGATTTATTTTTAAATCTTTTACTTATTAATT
TTTGGAATATTAATAAATTAGTATTATTTTATTCAAATAAGCTTATATGAATAGAAACAATTGTT
TTATTACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTAATAACTATTT
GAACGTGTCCAGAAAACATATTTATTTTTTAAAATTTTACTTATTAATTGTCAAAATATTAATAA
AGTTAAATTATTTTATTCGAAATAAACATGCAT
Found at i:160573 original size:542 final size:538
Alignment explanation
Indices: 159532--162791 Score: 2054
Period size: 542 Copynumber: 6.1 Consensus size: 538
159522 GATCATAACA
* * * *
159532 ATTTGAAATAAATAATTATTCAAATAGTCATAACTATTTGAACTTGCTCGGTAAACAGATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTGGTTCGGTAAACAAATTTATT
* * *** * * * *
159597 TTTTAAATCTTTTACTTATTAGTTTTTGGAATTTTAATAAATTAGTACTATTTTATTTC-AAAAA
66 TTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCGAATAA
* * * * * **
159661 AGCTTTTATGACTAGAAACAATTGGTTCATGACAAAATAAAAGGTCATAA-CGATTTGAAATAAA
131 A-CTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAAATCATAATC-ATTTGAAATAAA
* * * *
159725 TAATT-CTTCAAATAGTCATAACTATTTGAACGT-GTCCAGA-AAACATATTTATTTTTTAAAAT
194 TAATTGC-TCAAATAGCCATAACTATTAGAAC-TAGTTC-GATAAACAGATTTATTTTTT-AAA-
* **
159787 TTTACTTATTAATTTTTGGAATATTAATAAATTTAAATTATTTTA-TTCGAAATAAGCTTGCATG
254 TCTACTTATTAATTTTT-GAATATTAATAAATTTGTATTATTTTATTTC-AAATAAGCTTGCATG
* ** * * * * *
159851 AACAAAGCCAATTGTTTTATGACAAAACAAAAGGTCATAATGTTTTGAAATAGATAATTGTTCAG
317 AATAAA-AAAATTGTTTTATGACAAAACAAAAAGTAATAAGGATTTGAAATAGATAATTGTTCAA
* * * * * * * * * *
159916 ATAATCACAACTATTTGAATTTATTTGGTAAACATATTCTTTTTTTAATTCTCTCACTCATTAAT
381 ATAGTCATAATTATTTAAATTTATTTAGTAAACAAATTCATTTTTTAAATCTCTTACTTATTAAT
* * * * ** * * *
159981 TTTTGGACTATTAATAAATTAGTATTGTCTTACTTCAAATAAGCTTATATGAATTGAAACAAGTG
446 TTTTGGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAACTAAAACAATTG
* * * *
160046 TTTTATTAGAAAAGAAATGGTCATAATG
511 TTTTATGACAAAACAAAAGGTCATAATG
* * * * * * * *
160074 ATTTGAAATAGATAATTATTGAAATATTAATGACTATTTTAACTGGTTTGGTAAATATATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTGGTTCGGTAAACAAATTTATT
* * *
160139 TTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATTAGTTAATATTATTTTAATTCGAATAA
66 TTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCGAATAA
* * * *
160204 ACATGTATGAATAGAAATAATTATTTTATGACAAAATAAAAAATCATAA-CATGTTGAAATAAAT
131 ACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAAATCATAATCAT-TTGAAATAAAT
*
160268 AATTACTCAAATAGCCATAA-TGATTAGAACGT-GTTCGATAAACAGATTTA-TTTTTAAATCTT
195 AATTGCTCAAATAGCCATAACT-ATTAGAAC-TAGTTCGATAAACAGATTTATTTTTTAAATC--
160330 TTACTTATTAATTGTCTT-AATATTAATAAATTTGTATTATTTTA-TTCAAAATAAGCTTAG-AT
256 -TACTTATTAATT-T-TTGAATATTAATAAATTTGTATTATTTTATTTC-AAATAAGCTT-GCAT
* * * * *
160392 GAATAGAAAAAATTCTTTTATTACAAAACAAAAAGTTAT-AGGTATTTCAAATAGATAATTATTC
316 GAATA-AAAAAATTGTTTTATGACAAAACAAAAAGTAATAAGG-ATTTGAAATAGATAATTGTTC
* * *
160456 AAATAGTCCTAATTATTTAAATTTGTTTAGTAAACAAAGTCATTTTTTAAATCTCTTTA-TTATT
379 AAATAGTCATAATTATTTAAATTTATTTAGTAAACAAATTCATTTTTTAAATCTC-TTACTTATT
* *
160520 AATTTTTGGATTATTAATAAATTAGTATTATTTTATTTTGAATAAGGTTATATGAACTAAAACAA
443 AATTTTTGGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAACTAAAACAA
* * * *
160585 CTCTTTTATGACAAATCAAAAGGTCATAACG
508 TTGTTTTATGACAAAACAAAAGGTCATAATG
* * * * *
160616 ATTTGAAATAGATAATTATTCAAATTGTCATGATTATTTGATCTAGTGT-GGT-AAC--A--TAT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTGGT-TCGGTAAACAAATTTAT
* * * * * *
160675 TTTTAAAATTTTTTACTTACTAATTGTCAAAATATTAATAAATTAGTGTTATTTTAATACAAATA
65 TTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCGAATA
** * *
160740 AGA-TTGTATGAATAGAAACAATTGTTTTACAACAAAACAAAAAGTCATAATGATTTGAAATAAA
130 A-ACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAAATCATAATCATTTGAAATAAA
* * * * * *
160804 TAATTGCTCAAATAGTCATAACTATTTA-AACTAGTTTGATACATAGATTTATTGTCTAAATC-A
194 TAATTGCTCAAATAGCCATAACTA-TTAGAACTAGTTCGATAAACAGATTTATTTTTTAAATCTA
* * * * * **
160867 TTTATTAATTTTTGAAATATTAATAGATTAGTATTACTTTATTTCAAATAAACTTATATGAATAA
258 CTTATTAATTTTTG-AATATTAATAAATTTGTATTATTTTATTTCAAATAAGCTTGCATGAATAA
* * * *
160932 AAACATTTGTTGTATGACAAAACAAAAAGTAATAAGGATTTGAAATATACAATTGTTCAAATAGT
322 AAA-AATTGTTTTATGACAAAACAAAAAGTAATAAGGATTTGAAATAGATAATTGTTCAAATAGT
** ** ** * *
160997 -ATAATT-TTTTGAGCTGGTTAGGTAAATAAAATT-ATTTTTTAAATCTCTTACTTATTATTTTT
386 CATAATTATTTAAATTTATTTA-GTAAA-CAAATTCATTTTTTAAATCTCTTACTTATTAATTTT
* * * *
161059 TGAAATATTAATAAATTCA-TTTTATTTTATTTTGAATAAGC-TAGTATGAATTGAGAA-AATTG
449 TGGAATATTAATAAATT-AGTATTATTTTATTTTGAATAAGCTTA-TATGAACT-AAAACAATTG
*
161121 TTTTATGACAAGACAAAAGGTCATAATG
511 TTTTATGACAAAACAAAAGGTCATAATG
* ** * * * *
161149 ATTTGAAATAGAAAATCGTTCATATAGTCTTAACTATTTGAAATGGTTCGGCAAACAAATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTGGTTCGGTAAACAAATTTATT
** * * *** * * * * * *
161214 TTTTAAATCCCTTAATTATTAATTTTTGGAATATTATTAGATTAGTATTGTTTTATTTTGATTAA
66 TTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCGAATAA
* * * * * * * * * * * * *
161279 GCTTGTATAAACAAAAATAATTGTTTTGTGACATAACAAAAGATTATAATGATTTGAAGTATAGA
131 ACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAAATCATAATCATTTGAAATAAATA
* * * * * *
161344 ATTGTTCAAATAGCCATAACTATTTGAACTGGTTCGGTAAACATATTCATTTTTTAAATCT-CTT
196 ATTGCTCAAATAGCCATAACTATTAGAACTAGTTCGATAAACAGATTTATTTTTTAAATCTACTT
* * * *
161408 ATTAATTTTTGACAGATTAATAAATTAT-TATTATTTTATTTCAAATAATCATGTATG-ATAAAA
261 ATTAATTTTTGA-ATATTAATAAATT-TGTATTATTTTATTTCAAATAAGCTTGCATGAAT-AAA
* * * * * * *
161471 AACAATTGTTATATGACCAAACAAAAGGTGAT-AGCGATTTGAAATAGATAGTTGCTGAAAT-GA
323 AA-AATTGTTTTATGACAAAACAAAAAGTAATAAG-GATTTGAAATAGATAATTGTTCAAATAG-
* * * * * * * *
161534 TCATAATTATTTAAACTAATTTTGCAAATAGATTCACTTTTTAAATCACTTACTTATTAATTTTT
385 TCATAATTATTTAAATTTATTTAGTAAACAAATTCATTTTTTAAATCTCTTACTTATTAATTTTT
* * *
161599 GGAATATTAATAAATTAGAATTATTTTATTTTGAATAAGCTTGTATGAACTAAAACAATTATTTT
450 GGAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAACTAAAACAATTGTTTT
161664 ATGAC--AA-AAAA--TCATAATG
515 ATGACAAAACAAAAGGTCATAATG
* * * * * * * * * * *
161683 ATTTTAAATAGA-CATTGTTTAAATAGTCGTAACTATCTAAATTTGCTCGATAAACAAATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTGGTTCGGTAAACAAATTTA-T
* ** * *
161747 TTTTTAAA-C---TCCTGCTT-A-T-T---AA-A-T--T--CTT--T-TTA--TT--TT-GGATA
65 TTTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCGAATA
* * * * ** *
161788 AGCTTTTATGAATTGAAACAATTGTTTTATGTCAAAACAAAAGGTCATAA-CGATTTTATAA-AA
130 AACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAAATCATAATC-ATTTGA-AATAA
* * * * * ** *
161851 ATAATTGATCAAATAGTCATAACTTTGTA-AACTTGTTTGGCAAACAAATTTATTTTTTCAAATC
193 ATAATTGCTCAAATAGCCATAACTAT-TAGAACTAGTTCGATAAACAGATTTATTTTTT-AAATC
* ** * * *
161915 TTTTGCTTATTAATTTTCCAAATGTTCATAAATTTGGATTATTTTAATTTCCAAATAAGCTATAA
256 ---TACTTATTAATTTT-TGAATATTAATAAATTTGTATTATTTT-ATTT-CAAATAAGCT-T--
* * * * **
161980 GACATG-A-AACAAAA-TATTTTATGACTAAACAAAAAGGT-TTGAACTATTTGAAATAGATAAT
312 G-CATGAATAAAAAAATTGTTTTATGACAAAACAAAAA-GTAAT-AAGGATTTGAAATAGATAAT
* * * ** * * * *** * * * *
162041 TATTCTAATTGTTTTTACTATTTGAACCGATTTAGCAAACATATTTAATTTTTAAA--TC-T-CT
374 TGTTCAAATAGTCATAATTATTTAAATTTATTTAGTAAACAAATTCATTTTTTAAATCTCTTACT
* * * ** * * * *
162102 TATTAATTTTTGAAATATTATTAAATTAGTATTATTTT-TAATCAAATAGGTTTCTATG-ATTAG
439 TATTAATTTTTGGAATATTAATAAATTAGTATTATTTTAT-TTTGAATAAGCTTATATGAACTA-
* **
162165 AAACAAATGTTTTATGAC--AACAAATA--TTTTAATG
502 AAACAATTGTTTTATGACAAAACAAA-AGGTCATAATG
* * * * * * * *
162199 ATTTGAGATTGATAATTGTTC-AATAGTCGTAATTATTTGAACTGGTTTGGTAAATAGATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTGGTTCGGTAAACAAATTTATT
* * ** * ** * * *
162263 GTTTAAATCTGTTACCAATT-ATTTTTGAAATATTAATCAATTAGTATTATTTTATTTTGAATAA
66 TTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCGAATAA
* * * * * ** * **
162327 GCTTGTATGATAAAAAAACAATTGTATTATGACAAAATAAAAGGTCATAATGATTTGAAATTGAT
131 ACTTGTATGA-ATAGAAACAATTGTTTTATGACAAAACAAAAAATCATAATCATTTGAAATAAAT
* * * **
162392 AA-T--T---AT----TTTA--ATT-G-A-T--TT-GGTAAACAGATTTTATTTTTTAAAT-TTT
195 AATTGCTCAAATAGCCATAACTATTAGAACTAGTTCGATAAACAGA-TTTATTTTTTAAATCTAC
** * * ** * * *
162438 TTATTAATTTAGGAAATATTAATAAATTAGTATTATTTTATTCCATCTAAGCTTGTATTAACTGA
259 TTATTAATTTTTG-AATATTAATAAATTTGTATTATTTTATTTCAAATAAGCTTGCATGAA-TAA
** ** * * * * * * * *
162503 ATCAATTGTTTTATGACAAATTAAAATGTTATAATGTTTTTAAATAGACAATTGTTCAAATAATA
322 AAAAATTGTTTTATGACAAAACAAAAAGTAATAAGGATTTGAAATAGATAATTGTTCAAATAGTC
* * * * * * * * *
162568 ATAACTATTTGAACTTGTTT-GACAAACAGATTTATTTTTTAAATTTCTTTCTTATTAATTTTCT
387 ATAATTATTTAAATTTATTTAG-TAAACAAATTCATTTTTTAAATCTCTTACTTATTAATTTT-T
* * * * * * *
162632 --AAGTGTTAATAAATTAGTATTAATTTATTCTAAATAAGCTTGTATGAATTGAAACAATTGTTT
450 GGAA-TATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAACTAAAACAATTGTTT
* * *
162695 TATGACTAAA-AAATGGTCAAAATG
514 TATGACAAAACAAAAGGTCATAATG
* * * * * * * * * *
162719 ATTTGAAGTATATAATTATTCTAATAGTCTTAACCATTTGAAATGATTCGATAGATAAATTTATT
1 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTGGTTCGGTAAACAAATTTATT
162784 TTTTAAAT
66 TTTTAAAT
162792 ATTATGAAAT
Statistics
Matches: 2139, Mismatches: 452, Indels: 275
0.75 0.16 0.10
Matches are distributed among these distances:
510 94 0.04
511 11 0.01
512 2 0.00
513 7 0.00
514 132 0.06
515 69 0.03
516 60 0.03
517 67 0.03
518 121 0.06
519 19 0.01
520 26 0.01
521 58 0.03
522 13 0.01
523 1 0.00
524 5 0.00
525 2 0.00
526 2 0.00
527 2 0.00
528 2 0.00
529 3 0.00
530 6 0.00
532 18 0.01
533 191 0.09
534 136 0.06
535 8 0.00
536 7 0.00
537 159 0.07
538 285 0.13
539 136 0.06
540 10 0.00
541 14 0.01
542 458 0.21
543 13 0.01
544 2 0.00
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.42
Consensus pattern (538 bp):
ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTGGTTCGGTAAACAAATTTATT
TTTTAAATCTTTTACTTATTAATTGTCAAAATATTAATAAATTAGTATTATTTTAATTCGAATAA
ACTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAAATCATAATCATTTGAAATAAATA
ATTGCTCAAATAGCCATAACTATTAGAACTAGTTCGATAAACAGATTTATTTTTTAAATCTACTT
ATTAATTTTTGAATATTAATAAATTTGTATTATTTTATTTCAAATAAGCTTGCATGAATAAAAAA
ATTGTTTTATGACAAAACAAAAAGTAATAAGGATTTGAAATAGATAATTGTTCAAATAGTCATAA
TTATTTAAATTTATTTAGTAAACAAATTCATTTTTTAAATCTCTTACTTATTAATTTTTGGAATA
TTAATAAATTAGTATTATTTTATTTTGAATAAGCTTATATGAACTAAAACAATTGTTTTATGACA
AAACAAAAGGTCATAATG
Found at i:163205 original size:14 final size:13
Alignment explanation
Indices: 163185--163220 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
163175 TACAATAAAT
163185 TTATAAATAATAA
1 TTATAAATAATAA
*
163198 TTATTAAATAATTA
1 TTA-TAAATAATAA
163212 TTATAAATA
1 TTATAAATA
163221 TTTTATTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TTATAAATAATAA
Found at i:163296 original size:16 final size:16
Alignment explanation
Indices: 163277--163310 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
163267 AATCTATACA
*
163277 ATTATTTAAATATAAT
1 ATTAATTAAATATAAT
163293 ATTAATTAAATATAAT
1 ATTAATTAAATATAAT
163309 AT
1 AT
163311 CATGAATAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTAATTAAATATAAT
Found at i:163763 original size:36 final size:36
Alignment explanation
Indices: 163707--163797 Score: 98
Period size: 36 Copynumber: 2.5 Consensus size: 36
163697 ATATAATGTT
* **
163707 TTATAAATA-AATAATATAATACTAAATT-TTTATTTA
1 TTATAAATATTATAATATAATA-T-AATTACATATTTA
163743 TTATAAATATTATAAT-TAATATAATTACATATTTA
1 TTATAAATATTATAATATAATATAATTACATATTTA
*
163778 TTATATATAATTATAATATA
1 TTATAAAT-ATTATAATATA
163798 TAATAAACAT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
34 4 0.09
35 14 0.30
36 22 0.47
37 7 0.15
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.48
Consensus pattern (36 bp):
TTATAAATATTATAATATAATATAATTACATATTTA
Found at i:163808 original size:35 final size:35
Alignment explanation
Indices: 163737--163808 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
163727 ACTAAATTTT
*
163737 TATTTATTATAAATATTATAATTAATATAATTACA
1 TATTTATTATAAATATTATAATTAATATAATAACA
*
163772 TATTTATTATATATAATTATAA-T-ATATAATAAACA
1 TATTTATTATAAAT-ATTATAATTAATATAAT-AACA
163807 TA
1 TA
163809 ATATTAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
34 7 0.21
35 19 0.58
36 7 0.21
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (35 bp):
TATTTATTATAAATATTATAATTAATATAATAACA
Found at i:163906 original size:14 final size:14
Alignment explanation
Indices: 163880--164001 Score: 57
Period size: 14 Copynumber: 8.8 Consensus size: 14
163870 ACTAATAAAA
*
163880 TATTT-ATAATAAT
1 TATTTAATATTAAT
163893 TATTTAATATTAAT
1 TATTTAATATTAAT
163907 TATTTCAA-A-TAA-
1 TATTT-AATATTAAT
163919 TA-TTAACTATAATAAT
1 TATTTAA-TAT--TAAT
163935 TATTATAA-A-T-AT
1 TATT-TAATATTAAT
*
163947 TATTAAATATTTAA-
1 TATTTAATA-TTAAT
163961 TATTTAATATTCAAT
1 TATTTAATATT-AAT
* *
163976 ATATATAATAAT-AT
1 -TATTTAATATTAAT
163990 TATTATAATATT
1 TATT-TAATATT
164002 TATATAACTA
Statistics
Matches: 84, Mismatches: 7, Indels: 35
0.67 0.06 0.28
Matches are distributed among these distances:
10 2 0.02
11 4 0.05
12 10 0.12
13 14 0.17
14 32 0.38
15 6 0.07
16 12 0.14
17 1 0.01
18 3 0.04
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (14 bp):
TATTTAATATTAAT
Found at i:164032 original size:55 final size:56
Alignment explanation
Indices: 163927--164032 Score: 130
Period size: 55 Copynumber: 1.9 Consensus size: 56
163917 AATATTAACT
* *
163927 ATAATAATTATTATAAATATTATTAAATATTTAATATTTAATATTCAATATATATA
1 ATAATAATTATTATAAATATTATTAAATATTTAAGAATTAATATTCAATATATATA
*
163983 ATAAT-ATTATTAT-AATATTTATATAACTA-TTAAGAATTAAGTATT-AATAT
1 ATAATAATTATTATAAATA-TTAT-TAAATATTTAAGAATTAA-TATTCAATAT
164033 CCAATTTATA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
54 4 0.09
55 26 0.59
56 14 0.32
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (56 bp):
ATAATAATTATTATAAATATTATTAAATATTTAAGAATTAATATTCAATATATATA
Found at i:164356 original size:9 final size:9
Alignment explanation
Indices: 164311--164360 Score: 50
Period size: 9 Copynumber: 5.7 Consensus size: 9
164301 TTTATAATCT
164311 TATTATAAA
1 TATTATAAA
*
164320 TATTA-AGA
1 TATTATAAA
* *
164328 GATTATAAT
1 TATTATAAA
164337 TACTT-TAAA
1 TA-TTATAAA
164346 TATTATAAA
1 TATTATAAA
164355 TATTAT
1 TATTAT
164361 TATTATTTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
8 8 0.25
9 22 0.69
10 2 0.06
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (9 bp):
TATTATAAA
Found at i:164465 original size:17 final size:15
Alignment explanation
Indices: 164434--164463 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
164424 ATTTATTTAG
164434 TTTATATTTTAATAA
1 TTTATATTTTAATAA
164449 TTTATA-TTTAATAA
1 TTTATATTTTAATAA
164463 T
1 T
164464 AACTAATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TTTATATTTTAATAA
Found at i:164948 original size:25 final size:25
Alignment explanation
Indices: 164920--164975 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
164910 TGTAACTAGC
164920 TTATAATAAATTAATATACAA-TTAT-
1 TTATAAT-AATTAATATA-AATTTATA
164945 TTATTAATAATTAATATAAATTTATA
1 TTA-TAATAATTAATATAAATTTATA
164971 TTATA
1 TTATA
164976 CTATAATTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
24 2 0.07
25 19 0.68
26 7 0.25
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (25 bp):
TTATAATAATTAATATAAATTTATA
Found at i:165597 original size:18 final size:19
Alignment explanation
Indices: 165576--165625 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
165566 AATTTATTCA
165576 TAAT-TTATTATTATAAAT
1 TAATATTATTATTATAAAT
165594 TAATATTA-TATTTATAAA-
1 TAATATTATTA-TTATAAAT
165612 TAATAGTTATTATT
1 TAATA-TTATTATT
165626 TAATATTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
18 11 0.39
19 15 0.54
20 2 0.07
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
TAATATTATTATTATAAAT
Found at i:167899 original size:19 final size:20
Alignment explanation
Indices: 167863--167901 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
167853 AGATTAATAA
* *
167863 ATAATTATATTTATTTAATT
1 ATAATTATAATTAATTAATT
167883 ATAA-TATAATTAATTAATT
1 ATAATTATAATTAATTAATT
167902 GTTGCTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
ATAATTATAATTAATTAATT
Found at i:168290 original size:13 final size:14
Alignment explanation
Indices: 168269--168308 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
168259 AAATAGTTGT
168269 ATATTTATATTATA
1 ATATTTATATTATA
*
168283 AT-TTTATAATATA
1 ATATTTATATTATA
168296 ATATATTATATTA
1 ATAT-TTATATTA
168309 AGGTAGATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 12 0.55
14 3 0.14
15 7 0.32
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
ATATTTATATTATA
Found at i:168631 original size:17 final size:17
Alignment explanation
Indices: 168579--168634 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
168569 AAAAAAATTA
* *
168579 ATAAATTATATATTATTT
1 ATAAATT-TATAATATAT
*
168597 AT-AA-TTAT-ATAAAT
1 ATAAATTTATAATATAT
168611 ATAAATTTATAATATAT
1 ATAAATTTATAATATAT
168628 ATAAATT
1 ATAAATT
168635 ATCAAGTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
14 5 0.16
15 5 0.16
16 5 0.16
17 14 0.45
18 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATAAATTTATAATATAT
Found at i:168862 original size:14 final size:14
Alignment explanation
Indices: 168825--168874 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
168815 TATAAATTAT
*
168825 TTATATATAAAATAA
1 TTATAT-TATAATAA
*
168840 TTATATTATTATAA
1 TTATATTATAATAA
168854 -TATATTTATAATAA
1 TTATA-TTATAATAA
168868 TTA-ATTA
1 TTATATTA
168875 AAAATACATA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 7 0.23
14 15 0.50
15 8 0.27
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TTATATTATAATAA
Found at i:168862 original size:19 final size:19
Alignment explanation
Indices: 168808--168863 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
168798 AACAATACAA
168808 ATTATTAT-ATA-AATTAT
1 ATTATTATAATATAATTAT
*
168825 -TTATATATAAAATAATTAT
1 ATTAT-TATAATATAATTAT
*
168844 ATTATTATAATATATTTAT
1 ATTATTATAATATAATTAT
168863 A
1 A
168864 ATAATTAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
16 4 0.12
17 3 0.09
18 2 0.06
19 19 0.59
20 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
ATTATTATAATATAATTAT
Found at i:168915 original size:20 final size:20
Alignment explanation
Indices: 168882--168931 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
168872 TTAAAAATAC
* *
168882 ATAAAATAAATTTATTTAAT
1 ATAAAATTAATTTATATAAT
* *
168902 ATAAAATTATTTTATATATT
1 ATAAAATTAATTTATATAAT
*
168922 ATAACATTAA
1 ATAAAATTAA
168932 ATTTTCTGAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (20 bp):
ATAAAATTAATTTATATAAT
Found at i:169277 original size:20 final size:20
Alignment explanation
Indices: 169254--169299 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
169244 TCACGTACAA
*
169254 TATTTTTAA-TAAAATTATTT
1 TATTTTTAATTAAAA-TAGTT
*
169274 TA-TTATAATTAAAATAGTT
1 TATTTTTAATTAAAATAGTT
169293 TATTTTT
1 TATTTTT
169300 TTATCATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (20 bp):
TATTTTTAATTAAAATAGTT
Found at i:169295 original size:24 final size:23
Alignment explanation
Indices: 169268--169312 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
169258 TTTAATAAAA
169268 TTATTTTATTATAATTAAAATAGT
1 TTATTTTATTATAA-TAAAATAGT
* *
169292 TTATTTTTTTATCATAAAATA
1 TTATTTTATTATAATAAAATA
169313 ATTCTTTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (23 bp):
TTATTTTATTATAATAAAATAGT
Found at i:169568 original size:18 final size:18
Alignment explanation
Indices: 169528--169585 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
169518 CAAATTATTT
* *
169528 ATATATTATAATATAAT-
1 ATATTTTATATTATAATC
169545 ATTATTTTATATTATAATC
1 A-TATTTTATATTATAATC
*
169564 ATA-TTAATAGTT-TAATC
1 ATATTTTATA-TTATAATC
169581 ATATT
1 ATATT
169586 AGTATTGTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
17 14 0.41
18 19 0.56
19 1 0.03
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (18 bp):
ATATTTTATATTATAATC
Found at i:169999 original size:24 final size:22
Alignment explanation
Indices: 169957--170012 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 22
169947 TAATTTTATT
*
169957 TATAAATTACTATAAAATAATTAA
1 TATAAATTA-TATAAAATAAAT-A
*
169981 TATAAATTATATTATAATAAATA
1 TATAAATTATA-TAAAATAAATA
170004 T-TAAATTAT
1 TATAAATTAT
170013 CCTTTGTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 8 0.28
23 4 0.14
24 17 0.59
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
TATAAATTATATAAAATAAATA
Found at i:170198 original size:13 final size:13
Alignment explanation
Indices: 170182--170281 Score: 51
Period size: 15 Copynumber: 7.1 Consensus size: 13
170172 TTATTGTTAT
170182 TAATAATTAATTA
1 TAATAATTAATTA
*
170195 TAATAACAATAATTA
1 TAAT-A-ATTAATTA
170210 TAATAA-TATATTA
1 TAATAATTA-ATTA
*
170223 TAAT-ATTATATTGT
1 TAATAATTA-ATT-A
*
170237 TATATAATTTATTAA
1 TA-ATAATTAATT-A
* *
170252 TAATTATTTATTA
1 TAATAATTAATTA
170265 TTTAATAAATTAATTA
1 --TAAT-AATTAATTA
170281 T
1 T
170282 TTTATTATAA
Statistics
Matches: 69, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
12 3 0.04
13 20 0.29
14 14 0.20
15 22 0.32
16 10 0.14
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (13 bp):
TAATAATTAATTA
Found at i:170209 original size:15 final size:14
Alignment explanation
Indices: 170189--170227 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
170179 TATTAATAAT
170189 TAATTATAATAACAA
1 TAATTATAATAA-AA
*
170204 TAATTATAATAATA
1 TAATTATAATAAAA
170218 T-ATTATAATA
1 TAATTATAATA
170228 TTATATTGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.39
14 2 0.09
15 12 0.52
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (14 bp):
TAATTATAATAAAA
Found at i:170265 original size:26 final size:25
Alignment explanation
Indices: 170223--170324 Score: 63
Period size: 24 Copynumber: 4.1 Consensus size: 25
170213 TAATATATTA
* **
170223 TAATATTATATTGTTATATAATTTAT
1 TAATATTAT-TTATTATATAATAAAT
*
170249 TAATAATTATTTATTATTTAATAAAT
1 TAAT-ATTATTTATTATATAATAAAT
*
170275 T-A-ATTATTTTATTATAATAATATA-
1 TAATATTA-TTTATTAT-ATAATAAAT
*
170299 T-AT-TTCATTTATAATAT-ATAAAT
1 TAATATT-ATTTATTATATAATAAAT
170322 TAA
1 TAA
170325 AAATTAATTA
Statistics
Matches: 61, Mismatches: 8, Indels: 16
0.72 0.09 0.19
Matches are distributed among these distances:
22 4 0.07
23 7 0.11
24 20 0.33
25 8 0.13
26 17 0.28
27 5 0.08
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (25 bp):
TAATATTATTTATTATATAATAAAT
Found at i:170873 original size:25 final size:25
Alignment explanation
Indices: 170845--170892 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
170835 ACTTAAAATA
* *
170845 AATAGCATAATTAATTATTTATAAT
1 AATAACATAATTAAATATTTATAAT
**
170870 AATAATTTAATTAAATATTTATA
1 AATAACATAATTAAATATTTATA
170893 TTTTAATTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (25 bp):
AATAACATAATTAAATATTTATAAT
Found at i:171064 original size:26 final size:29
Alignment explanation
Indices: 171011--171072 Score: 80
Period size: 26 Copynumber: 2.3 Consensus size: 29
171001 TATTAATGTT
171011 TAAATAT-A-TATTAGTTTACAATATTTA
1 TAAATATAATTATTAGTTTACAATATTTA
*
171038 TTAATATAATTATTA-TTTACAA-A-TTA
1 TAAATATAATTATTAGTTTACAATATTTA
171064 TAAATATAA
1 TAAATATAA
171073 GAATTAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 11 0.35
27 7 0.23
28 8 0.26
29 5 0.16
ACGTcount: A:0.48, C:0.03, G:0.02, T:0.47
Consensus pattern (29 bp):
TAAATATAATTATTAGTTTACAATATTTA
Found at i:171078 original size:26 final size:29
Alignment explanation
Indices: 171020--171078 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 29
171010 TTAAATATAT
* **
171020 ATTAGTTTACAATATTTATTAATATAATT
1 ATTAGTTTACAATATTTATAAATATAAGA
171049 ATTA-TTTACAA-A-TTATAAATATAAGA
1 ATTAGTTTACAATATTTATAAATATAAGA
171075 ATTA
1 ATTA
171079 AATATATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 15 0.56
27 1 0.04
28 7 0.26
29 4 0.15
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (29 bp):
ATTAGTTTACAATATTTATAAATATAAGA
Found at i:171236 original size:4 final size:4
Alignment explanation
Indices: 171213--171301 Score: 53
Period size: 4 Copynumber: 21.8 Consensus size: 4
171203 TTTGTTTAGT
* *
171213 ATTA ATT- ATATA ATTAA ATTA ATTTA ATTT ATATA ATTA A--A ATTT
1 ATTA ATTA AT-TA ATT-A ATTA A-TTA ATTA AT-TA ATTA ATTA ATTA
*
171258 ATCTT ATATA ATTA ATTA ATT- ATTA ATTA ATTAA ATTA A-TA ATT
1 AT-TA AT-TA ATTA ATTA ATTA ATTA ATTA ATT-A ATTA ATTA ATT
171302 TTATTTATAT
Statistics
Matches: 69, Mismatches: 5, Indels: 22
0.72 0.05 0.23
Matches are distributed among these distances:
2 2 0.03
3 8 0.12
4 35 0.51
5 24 0.35
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (4 bp):
ATTA
Found at i:171294 original size:16 final size:15
Alignment explanation
Indices: 171261--171331 Score: 56
Period size: 16 Copynumber: 4.6 Consensus size: 15
171251 AAAATTTATC
171261 TTATATAATTAATTAA
1 TTAT-TAATTAATTAA
171277 TTATTAATTAATTAAA
1 TTATTAATTAATT-AA
* *
171293 TTAATAATT--TTAT
1 TTATTAATTAATTAA
* *
171306 TTATATAATTAAATAC
1 TTAT-TAATTAATTAA
171322 TTATTTAATT
1 TTA-TTAATT
171332 TAATAATAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
13 4 0.09
14 7 0.16
15 9 0.20
16 24 0.53
17 1 0.02
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (15 bp):
TTATTAATTAATTAA
Found at i:171327 original size:20 final size:20
Alignment explanation
Indices: 171218--171328 Score: 82
Period size: 20 Copynumber: 5.2 Consensus size: 20
171208 TTAGTATTAA
171218 TTATATAATTAAATTAATTTAAT
1 TTATATAATTAAA-T-ATTT-AT
171241 TTATATAATTAAA-ATTTAT
1 TTATATAATTAAATATTTAT
* *
171260 CTTATATAATTAATTAATTAT
1 -TTATATAATTAAATATTTAT
*
171281 TAAT-TAATTAAATTAATAATTTTAT
1 TTATATAATT--A--AAT-A-TTTAT
*
171306 TTATATAATTAAATACTTAT
1 TTATATAATTAAATATTTAT
171326 TTA
1 TTA
171329 ATTTAATAAT
Statistics
Matches: 72, Mismatches: 7, Indels: 21
0.72 0.07 0.21
Matches are distributed among these distances:
19 7 0.10
20 26 0.36
21 7 0.10
22 3 0.04
23 15 0.21
24 2 0.03
25 7 0.10
26 5 0.07
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (20 bp):
TTATATAATTAAATATTTAT
Found at i:171748 original size:17 final size:17
Alignment explanation
Indices: 171713--171748 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
171703 ATTTATTTAG
*
171713 TATAAATATTAATATAT
1 TATAAATATTAATAAAT
*
171730 TATAAATATTATTAAAT
1 TATAAATATTAATAAAT
171747 TA
1 TA
171749 ATTAAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TATAAATATTAATAAAT
Found at i:171807 original size:20 final size:20
Alignment explanation
Indices: 171769--171807 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
171759 CTAAAATATT
*
171769 TTTAGTAATTTAATCAATTA
1 TTTAGTAATTTAATAAATTA
* *
171789 TTTATTAATTTACTAAATT
1 TTTAGTAATTTAATAAATT
171808 TAATTAAATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (20 bp):
TTTAGTAATTTAATAAATTA
Found at i:171975 original size:21 final size:22
Alignment explanation
Indices: 171924--171976 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
171914 ATAATATTTT
171924 TAATTAA-ATT-TGTTTAATAA
1 TAATTAATATTATGTTTAATAA
*
171944 TGA-TAATTATTATG-TTAATAA
1 TAATTAA-TATTATGTTTAATAA
171965 TAATTAATATTA
1 TAATTAATATTA
171977 ATATAATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
19 3 0.11
20 2 0.07
21 17 0.63
22 5 0.19
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (22 bp):
TAATTAATATTATGTTTAATAA
Found at i:171988 original size:13 final size:15
Alignment explanation
Indices: 171946--171991 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
171936 TTTAATAATG
* *
171946 ATAATTATTATGTTA
1 ATAATAATTATATTA
171961 ATAATAATTAATATTA
1 ATAATAATT-ATATTA
171977 AT-ATAATT-TATTA
1 ATAATAATTATATTA
171990 AT
1 AT
171992 TTTAAATTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 7 0.25
15 14 0.50
16 7 0.25
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
ATAATAATTATATTA
Found at i:172100 original size:12 final size:12
Alignment explanation
Indices: 172076--172124 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
172066 GAAATCTAAG
172076 ATAATTAATAATA
1 ATAATT-ATAATA
*
172089 TTAATTATAATA
1 ATAATTATAATA
172101 ATAATTA-AAT-
1 ATAATTATAATA
*
172111 A-AATTATATTA
1 ATAATTATAATA
172122 ATA
1 ATA
172125 TAATTATTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
9 5 0.17
10 3 0.10
11 4 0.13
12 13 0.43
13 5 0.17
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
ATAATTATAATA
Found at i:172121 original size:14 final size:14
Alignment explanation
Indices: 172077--172131 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
172067 AAATCTAAGA
*
172077 TAAT-TAATAATAT
1 TAATATAATTATAT
*
172090 TAATTATAATAATAAT
1 TAA-TATAATTAT-AT
172106 TAA-ATAAATTATAT
1 TAATAT-AATTATAT
172120 TAATATAATTAT
1 TAATATAATTAT
172132 TTATTGAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
13 3 0.08
14 14 0.39
15 14 0.39
16 5 0.14
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TAATATAATTATAT
Found at i:172329 original size:21 final size:21
Alignment explanation
Indices: 172305--172354 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 21
172295 AATTATTATA
172305 TATAATAATTTAT-TTATAAAG
1 TATAATAATTTATATTA-AAAG
*
172326 TAT-A-AATTTATATTAATAG
1 TATAATAATTTATATTAAAAG
*
172345 TTTAATAATT
1 TATAATAATT
172355 ATAACTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
19 12 0.50
20 5 0.21
21 7 0.29
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (21 bp):
TATAATAATTTATATTAAAAG
Found at i:172447 original size:13 final size:13
Alignment explanation
Indices: 172410--172457 Score: 60
Period size: 13 Copynumber: 3.5 Consensus size: 13
172400 ATAATATTAA
172410 TAATTATATAAAT
1 TAATTATATAAAT
172423 TGATAGTTATATAAAT
1 T-A-A-TTATATAAAT
*
172439 TAATTATATAACT
1 TAATTATATAAAT
172452 TAATTA
1 TAATTA
172458 ATTGGTTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
13 16 0.52
14 2 0.06
15 2 0.06
16 11 0.35
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (13 bp):
TAATTATATAAAT
Found at i:173407 original size:16 final size:16
Alignment explanation
Indices: 173343--173416 Score: 54
Period size: 16 Copynumber: 5.0 Consensus size: 16
173333 TAATATTAAT
173343 TATAATTA--ATATT-
1 TATAATTATTATATTA
173356 TATAATTATT-TA-TA
1 TATAATTATTATATTA
* *
173370 -ACAATTA-TATAATA
1 TATAATTATTATATTA
*
173384 TGAAAATTATTATATTA
1 T-ATAATTATTATATTA
*
173401 TATAATTATAATATTA
1 TATAATTATTATATTA
173417 ACTTAATTAT
Statistics
Matches: 48, Mismatches: 5, Indels: 13
0.73 0.08 0.20
Matches are distributed among these distances:
12 1 0.02
13 17 0.35
14 4 0.08
16 19 0.40
17 7 0.15
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (16 bp):
TATAATTATTATATTA
Found at i:173623 original size:13 final size:13
Alignment explanation
Indices: 173585--173626 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
173575 TATCTATATT
*
173585 ATTAATTTATATTA
1 ATTAATTTA-ATAA
*
173599 ATT-ATTTTATAA
1 ATTAATTTAATAA
173611 ATTAATTTAATAA
1 ATTAATTTAATAA
173624 ATT
1 ATT
173627 TGTTTATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
12 6 0.25
13 15 0.62
14 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
ATTAATTTAATAA
Found at i:173829 original size:22 final size:23
Alignment explanation
Indices: 173804--173871 Score: 84
Period size: 25 Copynumber: 2.8 Consensus size: 23
173794 TTCAATTGCT
173804 TAATAAA-ATTAATATTATTATA
1 TAATAAATATTAATATTATTATA
*
173826 TAATTAAATTAATAATATTATTATTA
1 TAA-TAAA-TATTAATATTATTA-TA
173852 TAATAAATATTTAATATTAT
1 TAATAAATA-TTAATATTAT
173872 ATAATATTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
22 3 0.08
23 4 0.10
24 2 0.05
25 25 0.64
26 5 0.13
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
TAATAAATATTAATATTATTATA
Found at i:173832 original size:17 final size:17
Alignment explanation
Indices: 173810--173908 Score: 50
Period size: 16 Copynumber: 5.9 Consensus size: 17
173800 TGCTTAATAA
173810 AATTAATATTATTATAT
1 AATTAATATTATTATAT
*
173827 AATTAA-ATTAATA-AT
1 AATTAATATTATTATAT
* *
173842 -ATTATTATTATAATAAAT
1 AATTAATATTAT--TATAT
*
173860 ATTTAATATTA-TATA-
1 AATTAATATTATTATAT
* *
173875 ATATT-ATATAATTAAAT
1 A-ATTAATATTATTATAT
173892 AAATTAA-ATATATTATA
1 -AATTAATAT-TATTATA
173909 ATGATAAACA
Statistics
Matches: 60, Mismatches: 11, Indels: 21
0.65 0.12 0.23
Matches are distributed among these distances:
14 4 0.07
15 12 0.20
16 14 0.23
17 13 0.22
18 9 0.15
19 8 0.13
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AATTAATATTATTATAT
Found at i:173840 original size:31 final size:31
Alignment explanation
Indices: 173803--173907 Score: 82
Period size: 31 Copynumber: 3.6 Consensus size: 31
173793 ATTCAATTGC
173803 TTAATAAAATTAATATTATTATATAATTAAA
1 TTAATAAAATTAATATTATTATATAATTAAA
* * *
173834 TTAATAATATTATTATTA-TA-ATAA--ATA
1 TTAATAAAATTAATATTATTATATAATTAAA
* *
173861 TT--TAATATTATATAATATTATATAATTAAA
1 TTAATAAAATTA-ATATTATTATATAATTAAA
* *
173891 TAAATTAAA-T-ATATTAT
1 TTAATAAAATTAATATTAT
173908 AATGATAAAC
Statistics
Matches: 57, Mismatches: 10, Indels: 16
0.69 0.12 0.19
Matches are distributed among these distances:
25 8 0.14
26 4 0.07
27 6 0.11
28 4 0.07
29 10 0.18
30 5 0.09
31 17 0.30
32 3 0.05
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (31 bp):
TTAATAAAATTAATATTATTATATAATTAAA
Found at i:173847 original size:25 final size:26
Alignment explanation
Indices: 173813--173908 Score: 90
Period size: 26 Copynumber: 3.5 Consensus size: 26
173803 TTAATAAAAT
173813 TAATAT-TATTATATAATTAAATTAA
1 TAATATATATTATATAATTAAATTAA
*
173838 TAATAT-TATTATTATAATAAATATTTAA
1 TAATATATATTA-TATAATTAA-A-TTAA
*
173866 TATTATATAATATTATATAATTAAATAAA
1 TA--ATAT-ATATTATATAATTAAATTAA
173895 TTAA-ATATATTATA
1 -TAATATATATTATA
173909 ATGATAAACA
Statistics
Matches: 60, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
25 11 0.18
26 16 0.27
27 3 0.05
28 7 0.12
29 3 0.05
30 7 0.12
31 8 0.13
32 5 0.08
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
TAATATATATTATATAATTAAATTAA
Found at i:173884 original size:57 final size:57
Alignment explanation
Indices: 173811--173938 Score: 147
Period size: 58 Copynumber: 2.3 Consensus size: 57
173801 GCTTAATAAA
* * * *
173811 ATTAATATTATTATATAATTAAATTAA-T-AATATTATTATTATAATAAATATTTAAT
1 ATTAATAATATTATATAATTAAATAAATTAAATA-TATTATAATAATAAACATTTAAT
* *
173867 ATTATATAATATTATATAATTAAATAAATTAAATATATTATAATGATAAACATTTACT
1 ATTA-ATAATATTATATAATTAAATAAATTAAATATATTATAATAATAAACATTTAAT
173925 AATTAAT--TATTATA
1 -ATTAATAATATTATA
173939 ATTTTAACTA
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
56 11 0.18
57 21 0.34
58 22 0.35
59 8 0.13
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.47
Consensus pattern (57 bp):
ATTAATAATATTATATAATTAAATAAATTAAATATATTATAATAATAAACATTTAAT
Found at i:174940 original size:25 final size:22
Alignment explanation
Indices: 174912--174984 Score: 58
Period size: 24 Copynumber: 3.1 Consensus size: 22
174902 TATTAATTTT
174912 ATTATTTTATAATTATAAGTAAATA
1 ATTATTTTATAATTATAA-T--ATA
* *
174937 ATTATGTAATAATT-TAATATA
1 ATTATTTTATAATTATAATATA
* *
174958 ATTATTATATTAATTATTAAAATA
1 ATTATTTTA-TAATTA-TAATATA
174982 ATT
1 ATT
174985 GATATAATAA
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
21 9 0.23
22 5 0.13
23 1 0.03
24 12 0.31
25 12 0.31
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (22 bp):
ATTATTTTATAATTATAATATA
Found at i:174997 original size:21 final size:20
Alignment explanation
Indices: 174932--174998 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 20
174922 AATTATAAGT
*
174932 AAATAATTATGTAATAATTTAA
1 AAATAATTATATAATAA-TT-A
* *
174954 TATAATTATTATATTAATTATTA
1 -A-AATAATTATA-TAATAATTA
174977 AAATAATTGATATAATAATTA
1 AAATAATT-ATATAATAATTA
174998 A
1 A
174999 TTATTCTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
21 15 0.42
22 4 0.11
23 2 0.06
24 10 0.28
25 5 0.14
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (20 bp):
AAATAATTATATAATAATTA
Found at i:175185 original size:27 final size:27
Alignment explanation
Indices: 175146--175211 Score: 71
Period size: 27 Copynumber: 2.3 Consensus size: 27
175136 TATTAATTAA
*
175146 AATAATTAATATTGATAGATAAATAAATAT
1 AATAATTATTA-T-ATA-ATAAATAAATAT
*
175176 AATAATTATTATATAATAAATAGAT-T
1 AATAATTATTATATAATAAATAAATAT
175202 AATATATTAT
1 AATA-ATTAT
175212 AATTATTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
26 5 0.15
27 14 0.42
28 3 0.09
29 1 0.03
30 10 0.30
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.41
Consensus pattern (27 bp):
AATAATTATTATATAATAAATAAATAT
Found at i:175193 original size:23 final size:24
Alignment explanation
Indices: 175167--175212 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
175157 TTGATAGATA
*
175167 AATAAATATAATAAT-TATTATAT
1 AATAAATAGAATAATATATTATAT
*
175190 AATAAATAGATTAATATATTATA
1 AATAAATAGAATAATATATTATA
175213 ATTATTTATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (24 bp):
AATAAATAGAATAATATATTATAT
Found at i:175202 original size:19 final size:18
Alignment explanation
Indices: 175171--175213 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
175161 TAGATAAATA
*
175171 AATATAATAATTATTATAT
1 AATA-AATAATTAATATAT
175190 AATAAATAGATTAATATAT
1 AATAAATA-ATTAATATAT
*
175209 TATAA
1 AATAA
175214 TTATTTATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (18 bp):
AATAAATAATTAATATAT
Found at i:175312 original size:22 final size:21
Alignment explanation
Indices: 175252--175312 Score: 54
Period size: 22 Copynumber: 2.8 Consensus size: 21
175242 AATTTATATT
*
175252 TAAT-ATTAAAAATAAATATTAA
1 TAATAATT-AAAAT-AATTTTAA
*
175274 TAATAATTAAGATAATTTTAA
1 TAATAATTAAAATAATTTTAA
175295 TATTATAA-TAAAATAATT
1 TA--ATAATTAAAATAATT
175313 ATTTTATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
21 9 0.27
22 17 0.52
23 7 0.21
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (21 bp):
TAATAATTAAAATAATTTTAA
Found at i:175478 original size:17 final size:17
Alignment explanation
Indices: 175431--175487 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
175421 ATATTAATTG
*
175431 AATTAAATATTTATAGTA
1 AATTAAA-ATTTATAATA
* *
175449 ATTATTAATATTTATGATA
1 A--ATTAAAATTTATAATA
175468 AATTAAAATTTATAATA
1 AATTAAAATTTATAATA
175485 AAT
1 AAT
175488 AATAAATATT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
17 17 0.53
18 1 0.03
19 9 0.28
20 5 0.16
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.46
Consensus pattern (17 bp):
AATTAAAATTTATAATA
Found at i:175643 original size:20 final size:18
Alignment explanation
Indices: 175620--175674 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 18
175610 TAATATTATT
*
175620 ATAATTATTATAATATTTGG
1 ATAATTATTA-AATAATT-G
175640 ATAATTTATTCAAATAATTG
1 ATAA-TTATT-AAATAATTG
175660 ATAATTATTAAATAA
1 ATAATTATTAAATAA
175675 CTAATATTTA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 6 0.19
19 5 0.16
20 9 0.28
21 11 0.34
22 1 0.03
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.45
Consensus pattern (18 bp):
ATAATTATTAAATAATTG
Found at i:175775 original size:17 final size:17
Alignment explanation
Indices: 175736--175780 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
175726 AAATTAAAAG
175736 TACTTAAT-TTAGAAAT
1 TACTTAATATTAGAAAT
*
175752 TAATTAATATTA-ATAAT
1 TACTTAATATTAGA-AAT
175769 TACTTAATATTA
1 TACTTAATATTA
175781 TTAACATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 8 0.32
17 17 0.68
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (17 bp):
TACTTAATATTAGAAAT
Found at i:175796 original size:21 final size:21
Alignment explanation
Indices: 175772--175822 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
175762 TAATAATTAC
175772 TTAATATTATTAACATAATCA
1 TTAATATTATTAACATAATCA
* ** *
175793 TTAATACTATTAGGATAATTA
1 TTAATATTATTAACATAATCA
175814 TATAATATT
1 T-TAATATT
175823 TTTATATATT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (21 bp):
TTAATATTATTAACATAATCA
Found at i:175838 original size:25 final size:24
Alignment explanation
Indices: 175812--175882 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 24
175802 TTAGGATAAT
175812 TATATAATATTTTTATATATTAAA
1 TATATAATATTTTTATATATTAAA
175836 T-TA-AATATTTTTATAATATAATAAA
1 TATATAATATTTTTAT-ATAT--TAAA
*
175861 TAT-T-ATATTATTATATTATTAA
1 TATATAATATTTTTATA-TATTAA
175883 TTTAATTATA
Statistics
Matches: 40, Mismatches: 1, Indels: 13
0.74 0.02 0.24
Matches are distributed among these distances:
22 11 0.28
23 9 0.22
24 2 0.05
25 17 0.43
26 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATAATATTTTTATATATTAAA
Found at i:175850 original size:20 final size:21
Alignment explanation
Indices: 175817--175864 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
175807 ATAATTATAT
*
175817 AATATTTTTATATATTA-AATTA
1 AATA-TTTTATATAATATAA-TA
175839 AATATTTT-TATAATATAATA
1 AATATTTTATATAATATAATA
175859 AATATT
1 AATATT
175865 ATATTATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 14 0.58
21 6 0.25
22 4 0.17
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
AATATTTTATATAATATAATA
Found at i:175875 original size:20 final size:21
Alignment explanation
Indices: 175824--175875 Score: 51
Period size: 20 Copynumber: 2.6 Consensus size: 21
175814 TATAATATTT
175824 TTATA-TATTA-AATTAAATA
1 TTATATTATTATAATTAAATA
175843 TT-T-TTATAATATAA-TAAATA
1 TTATATTAT--TATAATTAAATA
175863 TTATATTATTATA
1 TTATATTATTATA
175876 TTATTAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 11
0.71 0.00 0.29
Matches are distributed among these distances:
18 4 0.15
19 2 0.07
20 14 0.52
21 3 0.11
22 4 0.15
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
TTATATTATTATAATTAAATA
Found at i:175901 original size:22 final size:23
Alignment explanation
Indices: 175847--175907 Score: 74
Period size: 22 Copynumber: 2.7 Consensus size: 23
175837 TAAATATTTT
* *
175847 TATAATATAATAAATATTATATTA
1 TATAATATTATTAAT-TTATATTA
175871 T-T-ATATTATTAATTTA-ATTA
1 TATAATATTATTAATTTATATTA
175891 TATAATATTATTAATTT
1 TATAATATTATTAATTT
175908 TCTTAAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 5 0.15
21 4 0.12
22 22 0.67
23 1 0.03
24 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (23 bp):
TATAATATTATTAATTTATATTA
Found at i:176047 original size:29 final size:30
Alignment explanation
Indices: 175994--176052 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
175984 TATTCTATTC
175994 TATTAAATAATTAATAAGAATTTATTTAATA
1 TATTAAATAA-TAATAAGAATTTATTTAATA
* *
176025 TATTAAATAA-ATTAAGTATTTATTTAAT
1 TATTAAATAATAATAAGAATTTATTTAAT
176053 TAACTATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 16 0.62
31 10 0.38
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.47
Consensus pattern (30 bp):
TATTAAATAATAATAAGAATTTATTTAATA
Found at i:176144 original size:18 final size:18
Alignment explanation
Indices: 176121--176155 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
176111 ATTATTCATA
*
176121 ATTAATTGAATTATATAT
1 ATTAATTCAATTATATAT
*
176139 ATTAATTCTATTATATA
1 ATTAATTCAATTATATA
176156 CAGATTGGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (18 bp):
ATTAATTCAATTATATAT
Found at i:176320 original size:21 final size:19
Alignment explanation
Indices: 176287--176329 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
176277 ATAACAAATT
*
176287 ATAATTTATAAATTATATA
1 ATAATTTATAAATAATATA
*
176306 ATAATTTAAATAAATAATTTA
1 ATAATTT--ATAAATAATATA
176327 ATA
1 ATA
176330 TTAAGTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.35
21 13 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
ATAATTTATAAATAATATA
Found at i:176485 original size:19 final size:20
Alignment explanation
Indices: 176457--176499 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
176447 AATTTAAATA
*
176457 AATTATAATACATA-ATACAT
1 AATTATAATAAATAGATA-AT
176477 AATTA-AATAAATAGATAAT
1 AATTATAATAAATAGATAAT
176496 AATT
1 AATT
176500 TATTATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (20 bp):
AATTATAATAAATAGATAAT
Found at i:176504 original size:23 final size:25
Alignment explanation
Indices: 176443--176504 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 25
176433 ATCAAATTAT
*
176443 TAATAATTTAAATAAATTATAATACA
1 TAATAATTT-ATTAAATTATAATACA
* *
176469 TAATACA-TAATTAAA-TA-AATAGA
1 TAATA-ATTTATTAAATTATAATACA
176492 TAATAATTTATTA
1 TAATAATTTATTA
176505 TTATTTTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
22 1 0.03
23 15 0.50
24 2 0.07
25 5 0.17
26 6 0.20
27 1 0.03
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (25 bp):
TAATAATTTATTAAATTATAATACA
Found at i:176535 original size:21 final size:20
Alignment explanation
Indices: 176491--176532 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 20
176481 AAATAAATAG
176491 ATAATAATTTATTATTATTTT
1 ATAATAATTTATTATTA-TTT
176512 ATAATAATATTATTAATTATT
1 ATAATAAT-TTATT-ATTATT
176533 ATATTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 7 0.37
23 4 0.21
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATAATAATTTATTATTATTT
Found at i:177352 original size:181 final size:176
Alignment explanation
Indices: 176855--177380 Score: 479
Period size: 181 Copynumber: 2.9 Consensus size: 176
176845 ATAATATCAA
* * * **
176855 TTTTGTCATAAAACAAATGTTTTTGTTCATATAAG-TTTTTTGGAATAAAATAATAT-TAATTTA
1 TTTTATCATAAAACAATTGTTTTTGTTCATATAAGCTTATTAAGAAT-AAATAAT-TCTAATTTA
* * ** *
176918 TTAATATTTCAAAAATTAATATGTAAGAGATTTAAAAAATAAATCTATTTGCTATACCAGTTCAA
64 TTAATATTTCAAAAATTAATAAGT-AGAGATTTAAAAAATGAATCT-TTT-C-CGACAAGTTCAA
* * * * * * * *
176983 TTAGTTATAACCATTTGACCAAATATTTATTTCAAA-CTGTTATGACCATTG
125 ATAATTATGACTATTTGAACAATTATCTATTTCAAATCTATTATGACCATTG
* * * *
177034 TTTTATCATAAAATAATTATTTTTGTTCATATAATCTTATTCAA-AATAAAGTAATGCTAATTTA
1 TTTTATCATAAAACAATTGTTTTTGTTCATATAAGCTTATT-AAGAATAAA-TAATTCTAATTTA
** * * * ** * * *
177098 TTAATATTTTGAAAATTAATAACTAAAGGATTTAGAAAATGTCTCTTTTGGCTTGACTAGTGCAA
64 TTAATATTTCAAAAATTAATAAGTAGA-GATTTAAAAAATGAATCTTTT--C-CGACAAGTTCAA
* *
177163 ACAATTATGACTATTTGAATAATTATCTATTTCAAATC-ATTATGACCATTTG
125 ATAATTATGACTATTTGAACAATTATCTATTTCAAATCTATTATGACCA-TTG
* * *
177215 TTTTCTCACAAAACAATTGTTTTTGTTCATACAAGCTTATTAAGAATAACATAATTCTAATTTAT
1 TTTTATCATAAAACAATTGTTTTTGTTCATATAAGCTTATTAAGAATAA-ATAATTCTAATTTAT
* *
177280 TAATATTCCAAAAATTAATAAGTGAGAGATTTAAAAAATGAATATGTTTACCGAGCAAGTTCAAA
65 TAATATTTCAAAAATTAATAAGT-AGAGATTTAAAAAATGAATCT-TTT-CCGA-CAAGTTCAAA
*
177345 TAATTATGGCTATTTGAACAATTATCTAGTTT-AAAT
126 TAATTATGACTATTTGAACAATTATCTA-TTTCAAAT
177381 TGCTATAACC
Statistics
Matches: 278, Mismatches: 55, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
179 38 0.14
180 103 0.37
181 128 0.46
182 9 0.03
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.41
Consensus pattern (176 bp):
TTTTATCATAAAACAATTGTTTTTGTTCATATAAGCTTATTAAGAATAAATAATTCTAATTTATT
AATATTTCAAAAATTAATAAGTAGAGATTTAAAAAATGAATCTTTTCCGACAAGTTCAAATAATT
ATGACTATTTGAACAATTATCTATTTCAAATCTATTATGACCATTG
Found at i:177743 original size:301 final size:301
Alignment explanation
Indices: 177167--177743 Score: 725
Period size: 301 Copynumber: 1.9 Consensus size: 301
177157 GTGCAAACAA
177167 TTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCATTTGTTTTCTCACAAAACAAT
1 TTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCATTTGTTTTCTCACAAAACAAT
* *
177232 TGTTTTTGTTCATACAAGCTTATTAAGAATAACATAATTCTAATTTATTAATATTCCAAAAATTA
66 TATTTTTGTTCATACAAGCTTATTAAGAATAAAATAATTCTAATTTATTAATATTCCAAAAATTA
* * * * * **
177297 ATAAGTGAGAGATTTAAAAAATGAATATGTTTACCGAGCAAGTTCAAATAATTATGGCTATTTGA
131 ATAAGTAAAAGATTTAAAAAATAAATATGTTTACCGAACAAGTTCAAATAATAATAACTATTTGA
* * * * * * *
177362 ACAATTATCTAGTTTAAATTGCTATAACCTTTTGTATTATCATAAAATAATTTTTTCTATTTATA
196 ACAATTATCTAGTTTAAATCGCTATAACCTTTTGTATTACCATAAAACAATTATATCAATTCATA
177427 CAAGCTTATTTCAAATCTGTTTACCGAATAATTTTGAATAG
261 CAAGCTTATTTCAAATCTGTTTACCGAATAATTTTGAATAG
* * * * *
177468 TTATGACTA-TTGAAATAATTATTTATTTCAAATCGTTATGACC-TTTAGTTTTGTTATAAAACA
1 TTATGACTATTTG-AATAATTATCTATTTCAAATCATTATGACCATTT-GTTTTCTCACAAAACA
* ** ** * * * *
177531 ATTATTTTTGTTCCTATTAGCTTATTCGGATTAAAATAATAT-TAATTTATTAATGTTTCAACAA
64 ATTATTTTTGTTCATACAAGCTTATTAAGAATAAAATAAT-TCTAATTTATTAATATTCCAAAAA
* *
177595 TTAATAAGTAAAAGATTTAAAAAATAAATTTGTTTACCGAACAAGTTCAAATAATAATAATTATT
128 TTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCGAACAAGTTCAAATAATAATAACTATT
* * *
177660 TGAATAATTATCTA-TTTCAAATCGTTATGACCTTTTTGT-TTCACCATAAAACAATTATATCAA
193 TGAACAATTATCTAGTTT-AAATCGCTATAACC-TTTTGTATT-ACCATAAAACAATTATATCAA
* *
177723 TTCATATAGGCTTA-TTCAAAT
255 TTCATACAAGCTTATTTCAAAT
177744 AAAATAATAC
Statistics
Matches: 233, Mismatches: 37, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
300 9 0.04
301 190 0.82
302 34 0.15
ACGTcount: A:0.38, C:0.11, G:0.09, T:0.42
Consensus pattern (301 bp):
TTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCATTTGTTTTCTCACAAAACAAT
TATTTTTGTTCATACAAGCTTATTAAGAATAAAATAATTCTAATTTATTAATATTCCAAAAATTA
ATAAGTAAAAGATTTAAAAAATAAATATGTTTACCGAACAAGTTCAAATAATAATAACTATTTGA
ACAATTATCTAGTTTAAATCGCTATAACCTTTTGTATTACCATAAAACAATTATATCAATTCATA
CAAGCTTATTTCAAATCTGTTTACCGAATAATTTTGAATAG
Found at i:177749 original size:181 final size:182
Alignment explanation
Indices: 177481--177827 Score: 421
Period size: 181 Copynumber: 1.9 Consensus size: 182
177471 TGACTATTGA
* **** * *** *
177481 AATAATTATTTATTTCAAATCGTTATGACCTTTAGTTTTGTTATAAAACAATTATTTTTGTTCCT
1 AATAATTATCTATTTCAAATCGTTATGACCTTTAGTTTCACCATAAAACAATTATATCAATTCAT
* * * * * * * *
177546 ATTAGCTTATTCGGATTAAAATAATATTAATTTATTAATGTTTCAACAATTAATAAGTAAAAGAT
66 ATTAGCTTATTCGAAATAAAATAATACTAACTTATCAATATTCCAAAAATTAATAAGTAAAAGAT
* * *
177611 TTAAAAAATAAATTTGTTTACC-GAACAAGTTCAAATAATAATAATTATTTG
131 TTAAAAAATAAATCTATTTACCAAAACAAGTTCAAATAATAATAATTATTTG
*
177662 AATAATTATCTATTTCAAATCGTTATGACCTTTTTGTTTCACCATAAAACAATTATATCAATTCA
1 AATAATTATCTATTTCAAATCGTTATGACC-TTTAGTTTCACCATAAAACAATTATATCAATTCA
* * *
177727 TA-TAGGCTTATTC-AAATAAAATAATACTAACTTATCACTATTCCAAAAATTAATGAGTAAGAG
65 TATTA-GCTTATTCGAAATAAAATAATACTAACTTATCAATATTCCAAAAATTAATAAGTAAAAG
*
177790 ATTTAAAAAATGAATCTATTTACCAAAACAAGTTCAAA
129 ATTTAAAAAATAAATCTATTTACCAAAACAAGTTCAAA
177828 ATAGTCATGA
Statistics
Matches: 137, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
181 91 0.66
182 46 0.34
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.39
Consensus pattern (182 bp):
AATAATTATCTATTTCAAATCGTTATGACCTTTAGTTTCACCATAAAACAATTATATCAATTCAT
ATTAGCTTATTCGAAATAAAATAATACTAACTTATCAATATTCCAAAAATTAATAAGTAAAAGAT
TTAAAAAATAAATCTATTTACCAAAACAAGTTCAAATAATAATAATTATTTG
Found at i:178601 original size:21 final size:23
Alignment explanation
Indices: 178575--178617 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
178565 TATTTAATTT
178575 TTAAATTA-AACAA-ATTTAAAC
1 TTAAATTAGAACAATATTTAAAC
*
178596 TTAAATTAGAATAATATTTAAA
1 TTAAATTAGAACAATATTTAAA
178618 TAGTTATGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 8 0.42
22 4 0.21
23 7 0.37
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (23 bp):
TTAAATTAGAACAATATTTAAAC
Found at i:179347 original size:21 final size:20
Alignment explanation
Indices: 179309--179352 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
179299 ATATTAATAA
*
179309 TATGAACACGTTTCAATAGTT
1 TATGAACACATTTCAATA-TT
* *
179330 TATGAACTCATTTGAATATT
1 TATGAACACATTTCAATATT
179350 TAT
1 TAT
179353 TTATTTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (20 bp):
TATGAACACATTTCAATATT
Found at i:180702 original size:26 final size:25
Alignment explanation
Indices: 180660--180710 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
180650 ATAAAATGTT
180660 ATTAATTATTATATAATATATAATA
1 ATTAATTATTATATAATATATAATA
*
180685 ATTATATTA-TATATTAATTTATAATA
1 ATTA-ATTATTATA-TAATATATAATA
180711 TTTCAAAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (25 bp):
ATTAATTATTATATAATATATAATA
Found at i:180810 original size:27 final size:27
Alignment explanation
Indices: 180780--180837 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 27
180770 ATTGATAAAT
180780 AATATGATT-ATTATTATAATAA-ATTAA
1 AATATGATTCA-TATTAT-ATAATATTAA
*
180807 AATATTATTCATATTATATAATATTAA
1 AATATGATTCATATTATATAATATTAA
180834 AATA
1 AATA
180838 ATTGTCTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 4 0.14
27 23 0.82
28 1 0.04
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (27 bp):
AATATGATTCATATTATATAATATTAA
Found at i:181615 original size:14 final size:16
Alignment explanation
Indices: 181596--181627 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
181586 ATCTTTTACT
181596 TAATA-TTA-TATAAA
1 TAATATTTATTATAAA
181610 TAATATTTATTATAAA
1 TAATATTTATTATAAA
181626 TA
1 TA
181628 GTAAACAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.31
15 3 0.19
16 8 0.50
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TAATATTTATTATAAA
Found at i:182176 original size:24 final size:24
Alignment explanation
Indices: 182111--182187 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
182101 TAATACTATA
*
182111 TAAATTA-AAATAAATT-ATATTT
1 TAAATTATAAATAATTTAATATTT
* * *
182133 T-AATTATTAAATTATCTAATCTTT
1 TAAATTA-TAAATAATTTAATATTT
182157 TAAATTATAAATAATTTAATATAATT
1 TAAATTATAAATAATTTAATAT--TT
182183 TAAAT
1 TAAAT
182188 AAAAATTAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
21 5 0.12
22 1 0.02
23 6 0.14
24 18 0.43
25 5 0.12
26 7 0.17
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (24 bp):
TAAATTATAAATAATTTAATATTT
Found at i:182202 original size:22 final size:23
Alignment explanation
Indices: 182163--182228 Score: 73
Period size: 23 Copynumber: 2.8 Consensus size: 23
182153 CTTTTAAATT
182163 ATAAATAATTTAAT-ATAATTTAA
1 ATAAATAA-TTAATAATAATTTAA
182186 ATAAA-AATTAATAATAATTTTAA
1 ATAAATAATTAATAATAA-TTTAA
* *
182209 ACAAATAAATAATTAATAAT
1 ATAAATAATTAA-TAATAAT
182229 AGATATTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
21 5 0.14
22 6 0.16
23 14 0.38
24 6 0.16
25 6 0.16
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (23 bp):
ATAAATAATTAATAATAATTTAA
Found at i:182242 original size:28 final size:26
Alignment explanation
Indices: 182183--182242 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 26
182173 TAATATAATT
182183 TAAATAAAAATTAATAATAATTTTAAA
1 TAAATAAAAATTAATAATAATTTT-AA
*
182210 CAAATAAATAATTAATAATAGATATTT-A
1 TAAATAAA-AATTAATAATA-AT-TTTAA
182238 TAAAT
1 TAAAT
182243 TTATAAGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
27 7 0.25
28 16 0.57
29 2 0.07
30 3 0.11
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (26 bp):
TAAATAAAAATTAATAATAATTTTAA
Found at i:182369 original size:26 final size:28
Alignment explanation
Indices: 182302--182369 Score: 69
Period size: 26 Copynumber: 2.6 Consensus size: 28
182292 AAATATAATC
182302 CAAATAATATT-TAATTATATAAATATT
1 CAAATAATATTATAATTATATAAATATT
182329 -AAAT-ATAATTA-AATTAT-T-AAT-TT
1 CAAATAAT-ATTATAATTATATAAATATT
182352 CAAATAATATTTATAATT
1 CAAATAATA-TTATAATT
182370 TAAACTTATA
Statistics
Matches: 35, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
23 2 0.06
24 8 0.23
25 8 0.23
26 17 0.49
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
CAAATAATATTATAATTATATAAATATT
Found at i:182985 original size:13 final size:13
Alignment explanation
Indices: 182921--182991 Score: 60
Period size: 13 Copynumber: 5.5 Consensus size: 13
182911 AATATTTATG
182921 TATTGTAATTATAA
1 TATT-TAATTATAA
182935 T-TTTAAATTAT-A
1 TATTT-AATTATAA
* *
182947 TAATTAA-TATAC
1 TATTTAATTATAA
*
182959 TATTATTATT-TAA
1 TATT-TAATTATAA
182972 TATTTAATTATAA
1 TATTTAATTATAA
182985 TATTTAA
1 TATTTAA
182992 ATATTAGAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 13
0.70 0.09 0.20
Matches are distributed among these distances:
11 3 0.07
12 12 0.27
13 28 0.62
14 2 0.04
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (13 bp):
TATTTAATTATAA
Found at i:183220 original size:13 final size:14
Alignment explanation
Indices: 183190--183222 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
183180 GAAATATTAT
183190 TAATATTATCTAATA
1 TAAT-TTATCTAATA
183205 TAATTTATCT-ATA
1 TAATTTATCTAATA
183218 TAATT
1 TAATT
183223 ATAAATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.44
14 6 0.33
15 4 0.22
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (14 bp):
TAATTTATCTAATA
Found at i:183706 original size:22 final size:21
Alignment explanation
Indices: 183665--183708 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 21
183655 ATTTATATTT
183665 AGATATTAAATATTATTAATA
1 AGATATTAAATATTATTAATA
183686 AGATAATTAATATATTA-TAATA
1 AGAT-ATTAA-ATATTATTAATA
183708 A
1 A
183709 ATTGTTATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.19
22 11 0.52
23 6 0.29
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.41
Consensus pattern (21 bp):
AGATATTAAATATTATTAATA
Found at i:184469 original size:9 final size:9
Alignment explanation
Indices: 184455--184559 Score: 50
Period size: 9 Copynumber: 12.0 Consensus size: 9
184445 TATTTAAAAC
184455 AATTATATT
1 AATTATATT
184464 AATTATATT
1 AATTATATT
*
184473 -ATAAATATT
1 AAT-TATATT
184482 AA-T-TATT
1 AATTATATT
184489 -ATT-TA-T
1 AATTATATT
184495 AATTATATT
1 AATTATATT
*
184504 ATATATTTATT
1 A-AT-TATATT
184515 -ATTATATT
1 AATTATATT
*
184523 ATTTGA-ATT
1 AATT-ATATT
184532 -ATTA-ATAT
1 AATTATAT-T
184540 AATTATAATT
1 AATTAT-ATT
184550 AATTTATATT
1 AA-TTATATT
184560 GTAAGCAATA
Statistics
Matches: 75, Mismatches: 6, Indels: 29
0.68 0.05 0.26
Matches are distributed among these distances:
6 2 0.03
7 13 0.17
8 12 0.16
9 27 0.36
10 10 0.13
11 11 0.15
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (9 bp):
AATTATATT
Found at i:184499 original size:40 final size:41
Alignment explanation
Indices: 184455--184559 Score: 106
Period size: 45 Copynumber: 2.4 Consensus size: 41
184445 TATTTAAAAC
184455 AATTATATTAATTATATTATAAATATTAATT-ATTATT-TAT
1 AATTATATTAATTATATTAT-AATATTAATTAATTATTATAT
* * *
184495 AATTATATTATATATTTATTATTATATTATTTGAATTATTAATAT
1 AATTATATTA-AT-TATATTATAATATTAATT-AATTATT-ATAT
184540 AATTATAATTAATTTATATT
1 AATTAT-ATTAA-TTATATT
184560 GTAAGCAATA
Statistics
Matches: 53, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
40 10 0.19
41 10 0.19
42 7 0.13
43 6 0.11
45 15 0.28
46 5 0.09
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (41 bp):
AATTATATTAATTATATTATAATATTAATTAATTATTATAT
Found at i:184501 original size:31 final size:30
Alignment explanation
Indices: 184456--184524 Score: 90
Period size: 29 Copynumber: 2.3 Consensus size: 30
184446 ATTTAAAACA
184456 ATTATA-T-TAATTATATTATAAATATTAATT
1 ATTATATTATAATTATATTAT--ATATTAATT
*
184486 ATTAT-TTATAATTATATTATATATTTATT
1 ATTATATTATAATTATATTATATATTAATT
184515 ATTATATTAT
1 ATTATATTAT
184525 TTGAATTATT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 13 0.37
30 10 0.29
31 12 0.34
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (30 bp):
ATTATATTATAATTATATTATATATTAATT
Found at i:184510 original size:19 final size:19
Alignment explanation
Indices: 184455--184524 Score: 72
Period size: 19 Copynumber: 3.6 Consensus size: 19
184445 TATTTAAAAC
184455 AATTATATTA-ATTATATTAT
1 AATTATATTATA-TAT-TTAT
*
184475 AAATATTAATTAT-TATTTAT
1 AATTA-T-ATTATATATTTAT
184495 AATTATATTATATATTTAT
1 AATTATATTATATATTTAT
*
184514 TATTATATTAT
1 AATTATATTAT
184525 TTGAATTATT
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
18 5 0.12
19 18 0.42
20 12 0.28
21 4 0.09
22 4 0.09
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
AATTATATTATATATTTAT
Found at i:184514 original size:11 final size:12
Alignment explanation
Indices: 184458--184524 Score: 54
Period size: 11 Copynumber: 5.7 Consensus size: 12
184448 TTAAAACAAT
184458 TATATTA-ATTA
1 TATATTATATTA
*
184469 TATTATAAATATTA
1 TA-TAT-TATATTA
184483 -ATTATTAT-TTA
1 TA-TATTATATTA
184494 TA-ATTATATTA
1 TATATTATATTA
184505 TATATT-TATTA
1 TATATTATATTA
184516 TTATATTAT
1 -TATATTAT
184525 TTGAATTATT
Statistics
Matches: 46, Mismatches: 2, Indels: 14
0.74 0.03 0.23
Matches are distributed among these distances:
10 5 0.11
11 15 0.33
12 15 0.33
13 7 0.15
14 4 0.09
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TATATTATATTA
Found at i:184520 original size:45 final size:45
Alignment explanation
Indices: 184456--184546 Score: 107
Period size: 45 Copynumber: 2.0 Consensus size: 45
184446 ATTTAAAACA
*
184456 ATTATATTAATTATATTATAA-ATATT-AATTATTATTTATAATTAT
1 ATTATATTAATTATATTATAATAT-TTGAATTATTA-ATATAATTAT
* *
184501 ATTATA-TATTTATTATTATATTATTTGAATTATTAATATAATTAT
1 ATTATATTAATTA-TATTATAATATTTGAATTATTAATATAATTAT
184546 A
1 A
184547 ATTAATTTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
44 5 0.12
45 25 0.62
46 10 0.25
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (45 bp):
ATTATATTAATTATATTATAATATTTGAATTATTAATATAATTAT
Found at i:184525 original size:11 final size:11
Alignment explanation
Indices: 184456--184525 Score: 57
Period size: 9 Copynumber: 7.0 Consensus size: 11
184446 ATTTAAAACA
184456 ATTATATTA--
1 ATTATATTATT
184465 ATTATATTA-T
1 ATTATATTATT
*
184475 A-AATATTAATT
1 ATTATATT-ATT
*
184486 ATTAT-TTATA
1 ATTATATTATT
184496 ATTATATTA-T
1 ATTATATTATT
184506 A-TAT-TTATT
1 ATTATATTATT
184515 ATTATATTATT
1 ATTATATTATT
184526 TGAATTATTA
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
8 3 0.06
9 19 0.39
10 13 0.27
11 12 0.24
12 2 0.04
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
ATTATATTATT
Found at i:184534 original size:17 final size:14
Alignment explanation
Indices: 184484--184550 Score: 57
Period size: 13 Copynumber: 4.6 Consensus size: 14
184474 TAAATATTAA
*
184484 TTATTATT-TATAA
1 TTATTATTATATAT
184497 TTA-TATTATATAT
1 TTATTATTATATAT
184510 TTATTATTATATTAT
1 TTATTATTATA-TAT
*
184525 TTGAATTATTAATATAA
1 TT--ATTATT-ATATAT
*
184542 TTATAATTA
1 TTATTATTA
184551 ATTTATATTG
Statistics
Matches: 45, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
12 4 0.09
13 10 0.22
14 8 0.18
15 10 0.22
17 10 0.22
18 3 0.07
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.58
Consensus pattern (14 bp):
TTATTATTATATAT
Found at i:184667 original size:22 final size:22
Alignment explanation
Indices: 184642--184709 Score: 81
Period size: 22 Copynumber: 3.2 Consensus size: 22
184632 TAAAAAATTA
184642 AATTATGAATAATTTAATATTT
1 AATTATGAATAATTTAATATTT
* *
184664 AATTA-GATATAA---AAAATTA
1 AATTATGA-ATAATTTAATATTT
184683 AATTATGAATAATTTAATATTT
1 AATTATGAATAATTTAATATTT
184705 AATTA
1 AATTA
184710 GATATGAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
19 14 0.38
20 2 0.05
21 2 0.05
22 19 0.51
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.44
Consensus pattern (22 bp):
AATTATGAATAATTTAATATTT
Found at i:184681 original size:41 final size:41
Alignment explanation
Indices: 184631--184719 Score: 169
Period size: 41 Copynumber: 2.2 Consensus size: 41
184621 ATATTATTTA
184631 ATAAAAAATTAAATTATGAATAATTTAATATTTAATTAGAT
1 ATAAAAAATTAAATTATGAATAATTTAATATTTAATTAGAT
184672 ATAAAAAATTAAATTATGAATAATTTAATATTTAATTAGAT
1 ATAAAAAATTAAATTATGAATAATTTAATATTTAATTAGAT
*
184713 ATGAAAA
1 ATAAAAA
184720 TGAATACTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (41 bp):
ATAAAAAATTAAATTATGAATAATTTAATATTTAATTAGAT
Found at i:184694 original size:19 final size:19
Alignment explanation
Indices: 184630--184694 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
184620 AATATTATTT
184630 AATAAAAAATTAAATTATG
1 AATAAAAAATTAAATTATG
* *
184649 AATAATTTAATATTTAATTA-G
1 AATAA---AAAATTAAATTATG
184670 ATATAAAAAATTAAATTATG
1 A-ATAAAAAATTAAATTATG
184690 AATAA
1 AATAA
184695 TTTAATATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
19 19 0.51
20 2 0.05
21 2 0.05
22 14 0.38
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (19 bp):
AATAAAAAATTAAATTATG
Found at i:184740 original size:41 final size:41
Alignment explanation
Indices: 184631--184729 Score: 137
Period size: 41 Copynumber: 2.4 Consensus size: 41
184621 ATATTATTTA
* *
184631 ATAAAAAATTAAATTATGAATAATTTAATATTTAATTAGAT
1 ATAAAAAATGAAACTATGAATAATTTAATATTTAATTAGAT
* *
184672 ATAAAAAATTAAATTATGAATAATTTAATATTTAATTAGAT
1 ATAAAAAATGAAACTATGAATAATTTAATATTTAATTAGAT
*
184713 AT-GAAAATGAATACTAT
1 ATAAAAAATGAA-ACTAT
184730 TGGATTTTTA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
40 7 0.13
41 47 0.87
ACGTcount: A:0.54, C:0.01, G:0.06, T:0.39
Consensus pattern (41 bp):
ATAAAAAATGAAACTATGAATAATTTAATATTTAATTAGAT
Found at i:184867 original size:15 final size:15
Alignment explanation
Indices: 184847--184884 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
184837 TCACACACAG
*
184847 ATATAATTGTTAAGT
1 ATATAATTGTTAAAT
184862 ATATAATATGTTAAAT
1 ATATAAT-TGTTAAAT
184878 AT-TAATT
1 ATATAATT
184885 ATTTAATTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 11 0.52
16 9 0.43
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (15 bp):
ATATAATTGTTAAAT
Found at i:185071 original size:19 final size:19
Alignment explanation
Indices: 185047--185085 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
185037 TAATAATCAT
*
185047 TAATTAATAAT-TGTATTAA
1 TAATTAACAATAT-TATTAA
185066 TAATTAACAATATTATTAA
1 TAATTAACAATATTATTAA
185085 T
1 T
185086 GGCTATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TAATTAACAATATTATTAA
Found at i:185866 original size:21 final size:22
Alignment explanation
Indices: 185824--185886 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 22
185814 TTTATCATAA
*
185824 TATTAATA-ATAGTTAAATTATT
1 TATTAATATATAATTAAA-TATT
185846 TA-TAATATATAATTAAATATT
1 TATTAATATATAATTAAATATT
185867 TATTAAT-TATAATT-AATATT
1 TATTAATATATAATTAAATATT
185887 ACTAAATTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
20 6 0.16
21 18 0.47
22 14 0.37
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
TATTAATATATAATTAAATATT
Found at i:185876 original size:28 final size:31
Alignment explanation
Indices: 185840--185904 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
185830 TAATAGTTAA
* *
185840 ATTATTTATAA-T-ATATAATTAAA-TATTT
1 ATTAATTATAATTAATATAACTAAATTATTT
*
185868 ATTAATTATAATTAATATTACTAAATTATTT
1 ATTAATTATAATTAATATAACTAAATTATTT
185899 ATTAAT
1 ATTAAT
185905 AGTTATTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 10 0.32
29 1 0.03
30 9 0.29
31 11 0.35
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (31 bp):
ATTAATTATAATTAATATAACTAAATTATTT
Found at i:185958 original size:17 final size:17
Alignment explanation
Indices: 185921--185958 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
185911 TATAGTATAG
*
185921 TTATTAATATATTAATA
1 TTATTAATATAATAATA
185938 TTATTAATATTAATAAT-
1 TTATTAATA-TAATAATA
185955 TTAT
1 TTAT
185959 GATATTGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTATTAATATAATAATA
Found at i:186083 original size:15 final size:16
Alignment explanation
Indices: 186046--186109 Score: 61
Period size: 14 Copynumber: 4.4 Consensus size: 16
186036 TATAATATAA
186046 TAATTATATATTATTA-
1 TAATTATAT-TTATTAG
186062 T--TT-TATTTA-TAG
1 TAATTATATTTATTAG
186074 TAATTATATTTATTAG
1 TAATTATATTTATTAG
*
186090 TAATTA-A-TAATTAG
1 TAATTATATTTATTAG
186104 TAATTA
1 TAATTA
186110 ATACAATAGT
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
11 2 0.05
12 4 0.10
13 3 0.07
14 16 0.38
15 7 0.17
16 10 0.24
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (16 bp):
TAATTATATTTATTAG
Found at i:186336 original size:23 final size:23
Alignment explanation
Indices: 186310--186367 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
186300 TTATTTTTGT
186310 TTATATAAATTATTTATTAAT-AA
1 TTATATAAATTATTTA-TAATCAA
186333 TTATTATAAA-TATTTATAATCAA
1 TTA-TATAAATTATTTATAATCAA
*
186356 ATAT-TAAATTAT
1 TTATATAAATTAT
186368 CCAACTTATA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 4 0.13
22 8 0.26
23 13 0.42
24 6 0.19
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (23 bp):
TTATATAAATTATTTATAATCAA
Found at i:186472 original size:9 final size:9
Alignment explanation
Indices: 186433--186480 Score: 53
Period size: 9 Copynumber: 5.2 Consensus size: 9
186423 TTATTTATAA
186433 ATATAAATT
1 ATATAAATT
*
186442 ATATTTAATT
1 ATA-TAAATT
*
186452 -TATATTATT
1 ATATA-AATT
186461 ATATAAATT
1 ATATAAATT
186470 ATATAAATT
1 ATATAAATT
186479 AT
1 AT
186481 TATTATTATC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
8 1 0.03
9 22 0.69
10 9 0.28
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
ATATAAATT
Found at i:186473 original size:17 final size:17
Alignment explanation
Indices: 186422--186473 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
186412 TTTATTTAAG
*
186422 ATTATT-TATAAATATAA
1 ATTATTATATAAAT-TAT
* *
186439 ATTA-TATTTAATTTAT
1 ATTATTATATAAATTAT
186455 ATTATTATATAAATTAT
1 ATTATTATATAAATTAT
186472 AT
1 AT
186474 AAATTATTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
16 7 0.25
17 21 0.75
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTATTATATAAATTAT
Found at i:186474 original size:19 final size:19
Alignment explanation
Indices: 186422--186474 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 19
186412 TTTATTTAAG
*
186422 ATTATT-TATAAA-TATAA
1 ATTATTATATAAATTATAT
*
186439 ATTA-TAT-TTAATT-TAT
1 ATTATTATATAAATTATAT
186455 ATTATTATATAAATTATAT
1 ATTATTATATAAATTATAT
186474 A
1 A
186475 AATTATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
16 10 0.36
17 9 0.32
18 5 0.18
19 4 0.14
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTATTATATAAATTATAT
Found at i:186586 original size:7 final size:7
Alignment explanation
Indices: 186539--186609 Score: 53
Period size: 7 Copynumber: 10.7 Consensus size: 7
186529 TTAAAGTTAT
186539 TAATT-A
1 TAATTAA
*
186545 TAATTAT
1 TAATTAA
*
186552 TTATTAA
1 TAATTAA
186559 T-A-TAA
1 TAATTAA
186564 T-ATTAA
1 TAATTAA
186570 TTAATTAA
1 -TAATTAA
186578 TAATTAA
1 TAATTAA
*
186585 TAAGTAA
1 TAATTAA
* *
186592 TAAGTCA
1 TAATTAA
186599 TAATTAA
1 TAATTAA
186606 -AATT
1 TAATT
186610 TTATTATTAC
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
5 5 0.09
6 13 0.24
7 31 0.57
8 5 0.09
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (7 bp):
TAATTAA
Found at i:187875 original size:23 final size:24
Alignment explanation
Indices: 187841--187893 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
187831 ATATTCATAT
*
187841 TAAAAT-TATTAATTTTAAATAAA
1 TAAAATATATTAATTATAAATAAA
*
187864 TAAAATAT-TTAATTATAAATATA
1 TAAAATATATTAATTATAAATAAA
*
187887 TATAATA
1 TAAAATA
187894 AATTTAAATC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 25 0.96
24 1 0.04
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
TAAAATATATTAATTATAAATAAA
Found at i:187972 original size:21 final size:21
Alignment explanation
Indices: 187941--187981 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
187931 TGAATATATT
187941 AATATATAATTAATTATAAATA
1 AATATATAATTAATTA-AAATA
*
187963 AATA-ATAATTATTTAAAAT
1 AATATATAATTAATTAAAAT
187982 TATTTTGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 10 0.56
22 4 0.22
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AATATATAATTAATTAAAATA
Found at i:189074 original size:181 final size:179
Alignment explanation
Indices: 188831--189304 Score: 506
Period size: 181 Copynumber: 2.6 Consensus size: 179
188821 TAATTTTTGA
* * * *
188831 AATATTAATAAATTAATATTATTTTATTTTGAACAAACTTATATGAACAAAAATATTTGTTTTAC
1 AATATTAATAAATT-ATATTATTTTA-TTTGAACAAGCTTGTATGAACAAAAATAATTGTTTTAT
* * * * *
188896 AACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCATATAGCCTTAACTA-TTTGAA
64 GATAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGCCATAACTATTTTGAA
* * ** * *
188960 -TTGATTCAGTAAACAAATTTATTTTTTAAATCTATTAATTATTAAAT-TTCAT
129 CGTG-TACAAAAAACAAATTTATTTTATAAAT-TATTAATTATT-AATCTTCAG
* * * * *
189012 AATATTACTAGATTAGTATTATTTTATTTCGAATAAGCTTGTATGAAGATAAATAATTGTTTTAT
1 AATATTAATAAATTA-TATTATTTTATTT-GAACAAGCTTGTATGAACAAAAATAATTGTTTTAT
* * * * * *
189077 GATAAAACAAAAGGTTATAATGA-TTGAAAATATAAAATTGTTCAAATAGTCATAATTATTTTGA
64 GATAAAACAAAAGGTCATAACGATTTG-AAATAGATAATTGTTCAAATAGCCATAACTATTTTGA
* * * **
189141 ACGTGTACAAAAAACAAATTTATTTTATATATTTTTACTTATTAATCTTTGG
128 ACGTGTACAAAAAACAAATTTATTTTATAAATTATTAATTATTAATCTTCAG
* * *
189193 AATATTAGTAAATTTATATTATTTTATTTGAAACAAGCTTGTATGAACAGAAACAATTGTTTTAT
1 AATATTAATAAA-TTATATTATTTTATTTG-AACAAGCTTGTATGAACAAAAATAATTGTTTTAT
* *
189258 GGTAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAAT
64 GATAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAAT
189305 CTCCTATTTA
Statistics
Matches: 241, Mismatches: 43, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
180 11 0.05
181 194 0.80
182 34 0.14
183 2 0.01
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (179 bp):
AATATTAATAAATTATATTATTTTATTTGAACAAGCTTGTATGAACAAAAATAATTGTTTTATGA
TAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATAGCCATAACTATTTTGAACG
TGTACAAAAAACAAATTTATTTTATAAATTATTAATTATTAATCTTCAG
Done.