Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168126.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_37, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 424845
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.38
Warning! 4000 characters in sequence are not A, C, G, or T
File 8 of 8
Found at i:413642 original size:62 final size:62
Alignment explanation
Indices: 413525--413642 Score: 141
Period size: 62 Copynumber: 1.9 Consensus size: 62
413515 AACGATAAAA
* * ** *
413525 AAAATAAAAAAAAAGAAAAAGATAGAAAAATAAATAAATAAAAAACATGTTAAAAATTTATG
1 AAAATAAAAAAAAAGAAAAAGATAGAAAAATAAACAAATAAAAAAAAAATAAAAAATTTATG
* *
413587 AAAATATAAATAAAGAAAGAA-ATA-AAAAATAAACCAAATAAAAAAAAAATAAAAAA
1 AAAATAAAAAAAAAGAAA-AAGATAGAAAAATAAA-CAAATAAAAAAAAAATAAAAAA
413643 AAAATATTAA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
61 9 0.19
62 36 0.77
63 2 0.04
ACGTcount: A:0.75, C:0.03, G:0.06, T:0.16
Consensus pattern (62 bp):
AAAATAAAAAAAAAGAAAAAGATAGAAAAATAAACAAATAAAAAAAAAATAAAAAATTTATG
Found at i:414326 original size:22 final size:23
Alignment explanation
Indices: 414259--414326 Score: 56
Period size: 20 Copynumber: 3.0 Consensus size: 23
414249 AAATAAAACG
*
414259 AAAAATAAACCAACAATGATAAATA
1 AAAAATAAACAAAC-ATGATAAA-A
*
414284 AAAAA-AAATAGAA-A-GAT-AAA
1 AAAAATAAACA-AACATGATAAAA
414304 AAAAATAAA-AAACATGATAAAA
1 AAAAATAAACAAACATGATAAAA
414326 A
1 A
414327 TTATGAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
19 2 0.06
20 8 0.22
21 8 0.22
22 7 0.19
23 1 0.03
24 3 0.08
25 7 0.19
ACGTcount: A:0.75, C:0.06, G:0.06, T:0.13
Consensus pattern (23 bp):
AAAAATAAACAAACATGATAAAA
Found at i:414386 original size:16 final size:16
Alignment explanation
Indices: 414332--414388 Score: 62
Period size: 16 Copynumber: 3.4 Consensus size: 16
414322 AAAAATTATG
414332 AAAATATAAATAAAGAAA
1 AAAATA-AAAT-AAGAAA
*
414350 GAAATAACAATAA-AAA
1 AAAATAA-AATAAGAAA
414366 TAAAATAAAATAAGAAA
1 -AAAATAAAATAAGAAA
414383 AAAATA
1 AAAATA
414389 TTAAAGCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
16 14 0.41
17 12 0.35
18 8 0.24
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (16 bp):
AAAATAAAATAAGAAA
Found at i:414411 original size:18 final size:18
Alignment explanation
Indices: 414367--414429 Score: 51
Period size: 18 Copynumber: 3.4 Consensus size: 18
414357 CAATAAAAAT
414367 AAAATAAA-ATAAGA-AAA
1 AAAATAAACA-AAGACAAA
414384 AAATATTAAAGCAAA-ACAAA
1 AAA-A-TAAA-CAAAGACAAA
*
414404 AAAATAAATAAAGACAAA
1 AAAATAAACAAAGACAAA
*
414422 AATATAAA
1 AAAATAAA
414430 ATATAAATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
17 6 0.16
18 17 0.45
19 6 0.16
20 8 0.21
21 1 0.03
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.14
Consensus pattern (18 bp):
AAAATAAACAAAGACAAA
Found at i:414915 original size:16 final size:15
Alignment explanation
Indices: 414877--414915 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
414867 TAAAACAAAG
*
414877 AAAAAAGTGAAAACA
1 AAAAAAATGAAAACA
*
414892 AAAAAAATGAAAGCA
1 AAAAAAATGAAAACA
414907 CAAAAAAAT
1 -AAAAAAAT
414916 AAGTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.74, C:0.08, G:0.10, T:0.08
Consensus pattern (15 bp):
AAAAAAATGAAAACA
Found at i:414984 original size:728 final size:734
Alignment explanation
Indices: 411371--414944 Score: 2365
Period size: 728 Copynumber: 4.8 Consensus size: 734
411361 AAAATTTATG
* * * *
411371 AAATAAAAATAAAATAAGAAAAAAATATTAAAGCAAA-AC-AAAAAGATAAAT-AAATACAAAAA
1 AAATAAAAAAAAAATAAAAAAAAAATATTAAAGCAAAGACAAAAAAGATAAATAAAAGACAATAA
*
411433 AATATAAAATATTAAAATAAACAAAAATGCGATAAAAATATAAG-AAGTAAGAAATCAAAAATAA
66 AATAT-AAATA-TAAAATAAACAAAAATGCAATAAAAATATAAGTAAG--A-AAATCAAAAAT--
* * *
411497 AAAAAAGACAAAATGAAATGAAATGAAAAAATACAAAAAAAATACAAAAATTGAA-AAAATACAA
124 -AAAAA-ATAAAATGAAATGAAATGAGAAAATAC-AAAAAAATACAAAAA---AATAAAAAAC-A
* * * *
411561 AAATAATAAAAAAACAATATAAAAATCAAAGAC-AAAATTAAAAATGAGAAAAAGTTAATACAAA
182 TAATAAT-AAGAAACAATATAAAAATCAAAGACAAAAAATAAAAATGAG-AAAAGTTAATGCAAA
* * * *
411625 TTAAAAATTGAAACAAAAGAAGAAAATGCAACAACAAAAACTATAAGAATTTAAAAATG-AAATA
245 ATAAAAATTAAAACAAAAGAAG-AAATG-AAAAAAAAAAACTATAAGAATTT-AAAATGAAAATA
* *
411689 AGAA-ATAAAAGAAATTTGTTA-AAAGAATTAAGAGAAGAATAAAATGAAAAG---A-ATTTATG
307 AGAATA-AAAAGAAATTTGTTAGAAA-AA--AAGAAAAGAATAAAATAAAAAGAAAAGATTTATG
* * *
411748 --AAAAAAAATCCAAAGAAGTATAAAAAAAATGGAAACAAGAAATAAAAAGAATTTTGTGAAAAA
368 AAAAAAAAAATCCAAAGAAGTA-AAAAAAAATGAAAACAAGAAATAAAAAGAA-TCTGTCAAAAA
* * * *
411811 ATTAAAAAAACAAGAAAAATAAAAAATGAAGAGGCAAAATATGAAACAAAATATAAAAGAAAAAA
431 ATTAGAAAAACAAGAAAAATAAAAAATGAAAAGGCAAAATATGAAATAAAATA-AAAAG-AAACA
* * * * *
411876 GTTTATG-AGATATTTTTAAAACAAAGAAAAATGTGGAACCAAAAAAAATACTGAAAGCACATGA
494 GTTT-TGTAGAAAATTTTAAAACAAAGAAAAAAGTGAAAACAAAAAAAATA-T-AAA-CACA-GA
* * * *
411940 AAAGATAAGT-AAAATGAAAAATTTTAATAATGGAAAAAAAGAAGAAAGAAAAGCAAGTTAATGA
554 AAAAATAAGTAAAAAAGAAAAA-TTTAA-AA-GG-AAAAAAG--GAAA-AACAG-AA---AAAGA
* * *
412004 AAAAT--ATAAAATAAAA-GAAAAA-ATAACCAACAACGATAAATAAAAAAAGATAGAAAAAT--
608 AAAATCAAAAAAATAAAACGAAAAATA-AACCAACAATGATAAATAAAAAAAAATAGAAAAATAA
* *
412063 ---AA-AAAAAACATGAT-AAAA-TTATTAAAATCATAAAT--AG-AA-AAA-AGAAAA-AAAC
672 AAAAATAAAAAACATGATAAAAATTTATGAAAAT-ATAAATAAAGAAAGAAATAAAAAATAAAC
* * * *
412115 ------AAAATAAATAAAGAAAAAATAATTAAAGCAAA-AC--AAAAGAT-AA-AAAATACAAAA
1 AAATAAAAAAAAAATAAAAAAAAAAT-ATTAAAGCAAAGACAAAAAAGATAAATAAAAGACAATA
* * *
412169 AAATAT-AATAT-AAATAAAC-AAAATACGATAAAATATAAGAAGTAAGAAAATC-AAAATAAAA
65 AAATATAAATATAAAATAAACAAAAATGCAATAAAA-AT-ATAAGTAAGAAAATCAAAAATAAAA
* * * * * *
412230 AATAAAAAAAGAAA-GAAGTGAAATGAAATGA-GAAAATATA-AAAAAAATACAAAA-AT--T--
128 AAT--AAAATGAAATGAAATGAGA--AAAT-ACAAAAAAATACAAAAAAATAAAAAACATAATAA
* * * * *
412287 GAA-AAAC-ATATAAAAAT-ATAAGA-AAACAATATAAAAT---CAAAG-CAA---AAATTAAAA
188 TAAGAAACAATATAAAAATCA-AAGACAAAAAATA-AAAATGAGAAAAGTTAATGCAAAATAAAA
* *
412341 ATGAAAAC-AAAGAAGAAAATGCAACAAAAAAAAACTATAAGAATTTAAAAATGAAAACAAGAAA
251 ATTAAAACAAAAGAAG-AAATG-AA-AAAAAAAAACTATAAGAATTT-AAAATGAAAATAAG-AA
* *
412405 TAAAAAGAAATTTG-TA-AAAGAATTAAGAAAAGAATAAAA-ATGAAAGACAA-ATTTATG--AA
311 TAAAAAGAAATTTGTTAGAAA-AA--AAGAAAAGAATAAAATA-AAAAGAAAAGATTTATGAAAA
* * * * * *
412464 AAAAAATCCTAGGAAGTATAAAAATAATGGAAACAAGAAATAAAAAGAATTTTGTGAAAAAAATT
372 AAAAAATCCAAAGAAGTA-AAAAAAAATGAAAACAAGAAATAAAAAGAA-TCTGT-CAAAAAATT
* * * *
412529 AGAAACACAAGAAAAATAAAAAATGAAAAGGCAAAAATATGAAACAAAATAAAAGATAAAATAGT
434 AGAAAAACAAGAAAAATAAAAAATGAAAAGGC-AAAATATGAAATAAAATAAAA-A-GAAACAG-
* * *
412594 TTTTATAGAAATTTTTAAAACAAAGAAAAATGTGAAAACAAAAAAAATATGAAAACACATG--AA
495 TTTTGTAGAAAATTTTAAAACAAAGAAAAAAGTGAAAACAAAAAAAATAT--AAACACA-GAAAA
* * ** * * *
412657 GATAAGTAAAAAAGTGAAAAATTTAAAA-G-AAAAAGGAAAAA-TGTTAATGAAAAATTACAAAA
557 AATAAGTAAAAAA--GAAAAATTTAAAAGGAAAAAAGGAAAAACAGAAAAAGAAAAATCAAAAAA
*
412719 AT--AAC---AAAT-AA-CAAC---GATAAATAAAAAAAGATAGAAAAATAAAAAAAT-AAAAAC
620 ATAAAACGAAAAATAAACCAACAATGATAAATAAAAAAAAATAGAAAAATAAAAAAATAAAAAAC
*
412773 ATGATAAAAATTTATGAAAATATAAATAAAGAAAGAGATAAAAAAT-AA-
685 ATGATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAATAAAC
* * *
412821 AAAT-------AAATAAGAAAGAAATATTAAAGCAAA-ACAAAAAAGATAAATAAAATACAA-AA
1 AAATAAAAAAAAAATAAAAAAAAAATATTAAAGCAAAGACAAAAAAGATAAATAAAAGACAATAA
* *
412877 AATATAAA-ATATAAA-CAACAAAAAATGCGATAAAAAATATAAGAAGTAAGAAAATCAAAAATT
66 AATATAAATATA-AAATAAAC-AAAAATGCAAT-AAAAATAT---AAGTAAGAAAATCAAAAA-T
* * ** *
412940 AAAAATTAAAAAAGACAAATGAAAT--G-AAAT-TGAAAAAATAGAAAAAAA-ATAAAAA-A-AA
124 AAAAAAT-AAAATG--AAATGAAATGAGAAAATACAAAAAAATACAAAAAAATA-AAAAACATAA
* *** ** *
412998 T--TGAA-AAAC-ATATAAAACATAATAAGA-AAACAATATAAAAA--ATCTAAGCCAA--AAAA
185 TAAT-AAGAAACAATATAAAA-ATCA-AAGACAAA-AA-ATAAAAATGAGAAAAGTTAATGCAAA
* * ***
413054 ACTAAAAATGAAAACAAAAGAAGAAAATGCAACAAAAAAAACTATTATTTATTTAAAAATGAAAA
245 A-TAAAAATTAAAACAAAAGAAG-AAATG-AAAAAAAAAAACTA-TAAGAATTT-AAAATGAAAA
* * *
413119 TATGAATAAAAAGAAATTTG-TA-AAAGAATTAAGAAAAGGAATAAAAATGAAAAG-ACAGATTT
305 TAAGAATAAAAAGAAATTTGTTAGAAA-AA--AAGAAAA-GAAT-AAAATAAAAAGAAAAGATTT
* * * *
413181 ATGAAAAAAAAAATCCTAGGAAGTATAAAAAAAAAT-AGAAACAAGAAATAAAAAGAATTTTGTG
365 ATGAAAAAAAAAATCCAAAGAAG--TAAAAAAAAATGA-AAACAAGAAATAAAAAGAA-TCTGTC
* * *
413245 AAAAATTATTAAAAAAACAAGAAAAAAATAAAAAA-GCAAAAAAGCAAAAATATATGAAACAAGA
426 AAAAA--ATTAGAAAAACAAG--AAAAATAAAAAATG--AAAAGGC--AAA-ATATGAAATAA-A
* ** * * * *
413309 A-AAAATA-AAAAATGAATAG-ACAAAAATATGAAACACAAATAAAAGATAAAAAAGTTTTGTAG
481 ATAAAA-AGAAACA-GTTTTGTA-GAAAATTTTAAA-AC-----AAAG--AAAAAA-----GT-G
* * * *
413371 AAATTTTTAAAACAAAAGAAAAAATGTGAAA-ACAAAAAAAAATATATGAAAGCACATTAAAGAT
529 --------AAAAC--AA-AAAAAATAT-AAACAC-AGAAAAAATA-A-G-TA--A-A--AAAGAA
* ** ** *** * * * *
413435 AAGTAAAAAAATAAAAAATTTTAAAAGAAAAAAAGAAAAAAGTTAATGAAAAATTATAAA-AATA
573 AAATTTAAAAGGAAAAAA-GGAAAAACAGAAAAAG-AAAAA-TCAA--AAAAA-TA-AAACGA-A
* * *
413499 AAATTGAAAAACCAACAACGATAAAAAAAATAAAAAAAAAGAAAAAGATAGAAAAATAAATAAAT
630 AAA-T---AAACCAACAATGAT--AAATAA-AAAAAAATAG-AAAA-AT------A-AAA-AAAT
*
413564 AAAAAACATGTTAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAATAAACC
678 AAAAAACATGATAAAAATTTATGAAAATATAAATAAAGAAAGAAATAAAAAATAAA-C
* * *
413622 AAATAAAAAAAAAATAAAAAAAAAATATTAAAGCAAAGCCAAAAAAGATAGATAAAATACAATAA
1 AAATAAAAAAAAAATAAAAAAAAAATATTAAAGCAAAGACAAAAAAGATAAATAAAAGACAATAA
413687 AATATAAATATAAAATAAACAAAAATGCAATAAAAATATAAGAAGTAAGAAAATCAAAAATAAAA
66 AATATAAATATAAAATAAACAAAAATGCAATAAAAATAT---AAGTAAGAAAATCAAAAATAAAA
*
413752 AATAAAATGAAATGAAATGAGAAAATACAAAAAAATACAAAAAAAATGAAAAACATAAATAATAA
128 AATAAAATGAAATGAAATGAGAAAATACAAAAAAATAC-AAAAAAATAAAAAACAT-AATAATAA
*
413817 GAAACAATATAAAAATCAAAGACAAAAATTAAAAATGAGAAAAGTTAATGCAAAATAAAAATTAA
191 GAAACAATATAAAAATCAAAGACAAAAAATAAAAATGAGAAAAGTTAATGCAAAATAAAAATTAA
* *
413882 AACAAAAGAAGAAATGAAATAAAAAAACTATAAGAATTTAAAATGAATATAAGAATAAAAAGAAA
256 AACAAAAGAAGAAATGAAAAAAAAAAACTATAAGAATTTAAAATGAAAATAAGAATAAAAAGAAA
* * * *
413947 TTTGTTAGATAAAAAGAAAAGAATAAAATGAAAAGACAAGATTTATGAGAAAAAAAATCCAAAGA
321 TTTGTTAGAAAAAAAGAAAAGAATAAAATAAAAAGAAAAGATTTATGAAAAAAAAAATCCAAAGA
* * *
414012 AGTATAAAAAAATGAAAACAAGAAATAAAAAGAATTTTGTGAAAAAATTAGAAAAACAAGAAAAA
386 AGTAAAAAAAAATGAAAACAAGAAATAAAAAGAA-TCTGTCAAAAAATTAGAAAAACAAGAAAAA
*
414077 TAAAAAATGAAAAGGCAAAATATGAAATAAAATAAAAAGATAAACAGTTTTGTAGAAATTTTTAA
450 TAAAAAATGAAAAGGCAAAATATGAAATAAAATAAAAAG--AAACAGTTTTGTAGAAAATTTTAA
* *
414142 AACAAAGAAAAATGTGAAAACAAAAAAAATATAAACACATGAAAAGATAAGTAAAAAATGAAAAA
513 AACAAAGAAAAAAGTGAAAACAAAAAAAATATAAACACA-GAAAAAATAAGTAAAAAA-GAAAAA
* * ** * * *
414207 TTTAAAAGGGAAAAAGGAAAAAGAGTTAATGAAAAATTATAAAAATAAAACGAAAAATAAACCAA
576 TTTAAAAGGAAAAAAGGAAAAACAGAAAAAGAAAAATCAAAAAAATAAAACGAAAAATAAACCAA
*
414272 CAATGATAAATAAAAAAAAATAGAAAGATAAAAAAAATAAAAAACATGATAAAAA-TTATGAAAA
641 CAATGATAAATAAAAAAAAATAGAAAAAT-AAAAAAATAAAAAACATGATAAAAATTTATGAAAA
*
414336 TATAAATAAAGAAAGAAAT-AACAAT-AA-
705 TATAAATAAAGAAAGAAATAAAAAATAAAC
* *
414363 AAAT-AAAATAAAATAAGAAAAAAATATTAAAGCAAA-ACAAAAAA-ATAAAT-AAAGAC-A-AA
1 AAATAAAAAAAAAATAAAAAAAAAATATTAAAGCAAAGACAAAAAAGATAAATAAAAGACAATAA
* *
414422 AATATAAA-ATATAAATAAA-GAAAATGCGAT-AAAA-AT-A-TAAGAAAATCAAAAATACAAAA
66 AATATAAATATA-AAATAAACAAAAATGCAATAAAAATATAAGTAAGAAAATCAAAAATA-AAAA
* *
414481 ATACAAAATGAAATGAAATGA-AAAA-ATAAAAAAATAC-AAAAATTAAAAAACAT-ATAA-AA-
129 AT--AAAATGAAATGAAATGAGAAAATACAAAAAAATACAAAAAAATAAAAAACATAATAATAAG
* *
414540 AAATAATATAAAAAATCAAAGACAAAAAAATAAATAA-GAGAAAAGTTAATGCCAAATAAAAA-T
192 AAACAATAT-AAAAATCAAAGAC-AAAAAATAAA-AATGAGAAAAGTTAATGCAAAATAAAAATT
* *
414603 GAAACAAAAGAAGAAAATGCAACAAAAAAAAATTATAAGAATTTAAAAATGAAAATAAGAAATAA
254 AAAACAAAAGAAG-AAATG-AA-AAAAAAAAACTATAAGAATTT-AAAATGAAAATAAG-AATAA
*
414668 AAA-AAATTTG-TA-AAAAGATTAAGAAAGGAATAAAAATAAAAAGAAAAGATTTATGAAAAATA
314 AAAGAAATTTGTTAGAAAA-A--AAGAAAAGAAT-AAAATAAAAAGAAAAGATTTATG-AAAA-A
* *
414730 AAAAATTC-AAGAAAGTGTAAAAAAAAATGGAAACAAGAAATAAAAA-AA-CTGTCAAAAAATTA
373 AAAAATCCAAAG-AA--GTAAAAAAAAATGAAAACAAGAAATAAAAAGAATCTGTCAAAAAATTA
*
414792 GAAAAACAAGAAAAAATAAAAAATGAAGAGGCAAAAAATATGAAATAAAATAAAAAG-AA-AGTT
435 GAAAAACAAG-AAAAATAAAAAATGAAAAGGC--AAAATATGAAATAAAATAAAAAGAAACAGTT
*
414855 TTGTA-AAAATTTTAAAACAAAGAAAAAAGTGAAAACAAAAAAAATGA-AAGCACA-AAAAAATA
497 TTGTAGAAAATTTTAAAACAAAGAAAAAAGTGAAAACAAAAAAAAT-ATAAACACAGAAAAAATA
*
414917 AGT-AAAAA-AAAATTTTAAAA-GAAAAAAG
561 AGTAAAAAAGAAAAATTTAAAAGGAAAAAAG
414945 TTAATGAAAA
Statistics
Matches: 2352, Mismatches: 223, Indels: 532
0.76 0.07 0.17
Matches are distributed among these distances:
696 25 0.01
699 4 0.00
700 2 0.00
701 16 0.01
702 10 0.00
703 21 0.01
704 15 0.01
705 19 0.01
706 9 0.00
707 19 0.01
708 16 0.01
709 24 0.01
710 61 0.03
711 60 0.03
712 28 0.01
713 29 0.01
714 84 0.04
715 58 0.02
716 47 0.02
717 78 0.03
718 12 0.01
719 5 0.00
720 57 0.02
721 40 0.02
722 31 0.01
723 39 0.02
724 66 0.03
725 47 0.02
726 64 0.03
727 39 0.02
728 111 0.05
729 69 0.03
730 58 0.02
731 52 0.02
732 24 0.01
733 66 0.03
734 17 0.01
735 28 0.01
736 1 0.00
737 28 0.01
738 28 0.01
739 20 0.01
740 30 0.01
741 4 0.00
742 2 0.00
743 3 0.00
744 5 0.00
745 28 0.01
746 20 0.01
747 3 0.00
748 2 0.00
751 5 0.00
752 2 0.00
753 8 0.00
754 16 0.01
755 10 0.00
756 6 0.00
757 1 0.00
758 13 0.01
759 1 0.00
760 10 0.00
761 1 0.00
762 15 0.01
763 7 0.00
764 8 0.00
765 5 0.00
766 6 0.00
767 5 0.00
768 17 0.01
769 15 0.01
770 1 0.00
771 1 0.00
772 2 0.00
773 1 0.00
774 1 0.00
775 8 0.00
776 18 0.01
777 2 0.00
779 5 0.00
780 2 0.00
781 4 0.00
784 3 0.00
786 5 0.00
787 9 0.00
788 6 0.00
789 2 0.00
793 5 0.00
795 5 0.00
796 3 0.00
797 4 0.00
798 50 0.02
799 5 0.00
800 16 0.01
801 18 0.01
802 5 0.00
803 6 0.00
804 12 0.01
805 10 0.00
806 13 0.01
807 6 0.00
808 76 0.03
809 71 0.03
810 65 0.03
811 14 0.01
812 28 0.01
813 19 0.01
814 22 0.01
815 22 0.01
816 28 0.01
817 4 0.00
ACGTcount: A:0.68, C:0.05, G:0.10, T:0.17
Consensus pattern (734 bp):
AAATAAAAAAAAAATAAAAAAAAAATATTAAAGCAAAGACAAAAAAGATAAATAAAAGACAATAA
AATATAAATATAAAATAAACAAAAATGCAATAAAAATATAAGTAAGAAAATCAAAAATAAAAAAT
AAAATGAAATGAAATGAGAAAATACAAAAAAATACAAAAAAATAAAAAACATAATAATAAGAAAC
AATATAAAAATCAAAGACAAAAAATAAAAATGAGAAAAGTTAATGCAAAATAAAAATTAAAACAA
AAGAAGAAATGAAAAAAAAAAACTATAAGAATTTAAAATGAAAATAAGAATAAAAAGAAATTTGT
TAGAAAAAAAGAAAAGAATAAAATAAAAAGAAAAGATTTATGAAAAAAAAAATCCAAAGAAGTAA
AAAAAAATGAAAACAAGAAATAAAAAGAATCTGTCAAAAAATTAGAAAAACAAGAAAAATAAAAA
ATGAAAAGGCAAAATATGAAATAAAATAAAAAGAAACAGTTTTGTAGAAAATTTTAAAACAAAGA
AAAAAGTGAAAACAAAAAAAATATAAACACAGAAAAAATAAGTAAAAAAGAAAAATTTAAAAGGA
AAAAAGGAAAAACAGAAAAAGAAAAATCAAAAAAATAAAACGAAAAATAAACCAACAATGATAAA
TAAAAAAAAATAGAAAAATAAAAAAATAAAAAACATGATAAAAATTTATGAAAATATAAATAAAG
AAAGAAATAAAAAATAAAC
Found at i:414999 original size:15 final size:16
Alignment explanation
Indices: 414981--415020 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
414971 AAAATACAAT
*
414981 AAAAATATAAAAATCA
1 AAAAATATAAAAATAA
*
414997 AAAAAT-CAAAAATAA
1 AAAAATATAAAAATAA
415012 AAAAATATA
1 AAAAATATA
415021 TATTAAATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (16 bp):
AAAAATATAAAAATAA
Found at i:415379 original size:52 final size:51
Alignment explanation
Indices: 415314--415418 Score: 149
Period size: 52 Copynumber: 2.0 Consensus size: 51
415304 ATAAGGTGAT
*
415314 CTGCATTTTAAGTTAAACATAAACAACATGCCACATATATATAAAGAACAATG
1 CTGCATTTTAAGTTAAACACAAACAACATGCCAC--ATATATAAAGAACAATG
* * *
415367 CTGCA-TTTAAGTTAAACACAAGCAACATGGCACATGTATAAAGAACAATG
1 CTGCATTTTAAGTTAAACACAAACAACATGCCACATATATAAAGAACAATG
415417 CT
1 CT
415419 ATTTTAGAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
50 18 0.38
52 25 0.52
53 5 0.10
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.25
Consensus pattern (51 bp):
CTGCATTTTAAGTTAAACACAAACAACATGCCACATATATAAAGAACAATG
Found at i:416533 original size:24 final size:25
Alignment explanation
Indices: 416499--416548 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
416489 CAACTTGCAA
*
416499 AATAAACCCAACAAAACACA-CAGG
1 AATAAAACCAACAAAACACACCAGG
*
416523 AATAAAACCAACCAAACACACCAGG
1 AATAAAACCAACAAAACACACCAGG
416548 A
1 A
416549 CATCAGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.58, C:0.30, G:0.08, T:0.04
Consensus pattern (25 bp):
AATAAAACCAACAAAACACACCAGG
Found at i:422336 original size:20 final size:20
Alignment explanation
Indices: 422289--422336 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
422279 TCTCAGCATC
*
422289 CAGCCTTAGCAGTTGCTTTA
1 CAGCCTTCGCAGTTGCTTTA
422309 CAGCCTTCGCAGTTGCTTTA
1 CAGCCTTCGCAGTTGCTTTA
422329 CAGCCTTC
1 CAGCCTTC
422337 AGGAAAACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.17, C:0.31, G:0.19, T:0.33
Consensus pattern (20 bp):
CAGCCTTCGCAGTTGCTTTA
Found at i:424584 original size:22 final size:22
Alignment explanation
Indices: 424550--424601 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
424540 CCGCTGTCGC
* * *
424550 CAGCCTCCGACCAGCCACCCTA
1 CAGCCACCAACCAACCACCCTA
*
424572 CAGCCACCAACCAACTACCCTA
1 CAGCCACCAACCAACCACCCTA
424594 CAGCCACC
1 CAGCCACC
424602 TAGATCCCCC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.29, C:0.54, G:0.10, T:0.08
Consensus pattern (22 bp):
CAGCCACCAACCAACCACCCTA
Done.