genome.fa.s302.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168127.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_370, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30524

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6464--6636	41	4.2	41	82	1	184	22	15	24	36	1.93
6643--6681	8	4.6	8	84	9	51	89	2	0	7	0.56
6653--6683	15	2.1	15	93	0	53	87	3	0	9	0.66
6899--7061	3	50.3	3	71	21	84	28	2	2	66	1.17
7031--7141	44	2.5	44	83	16	124	22	5	2	69	1.22
7046--7095	19	2.6	19	79	14	59	22	4	2	72	1.12
7031--7141	25	4.9	22	72	15	84	22	5	2	69	1.22
8017--8103	5	17.6	5	69	21	51	12	4	3	79	1.01
8021--8073	8	6.1	8	78	20	54	11	3	1	83	0.87
8021--8073	17	3.0	17	82	15	63	11	3	1	83	0.87
8018--8108	38	2.4	38	80	12	100	13	5	3	78	1.06
8021--8104	30	2.9	29	83	13	95	11	5	3	78	1.05
8017--8108	18	5.0	17	74	19	62	13	5	3	78	1.05
8120--8249	59	2.2	58	90	4	208	44	6	13	35	1.70
8214--8288	39	1.9	39	100	0	150	40	13	5	41	1.67
8155--8344	96	2.0	97	91	3	312	41	8	10	38	1.71
8253--8712	56	8.1	55	82	6	476	42	6	13	37	1.71
8253--8712	114	4.1	112	82	5	525	42	6	13	37	1.71
8253--8710	170	2.7	169	85	5	568	42	6	13	37	1.71
9849--9882	13	2.7	12	86	13	50	88	0	11	0	0.52
9847--9882	17	2.3	15	90	9	54	88	0	11	0	0.50
11439--11513	36	2.1	36	83	11	93	56	5	6	32	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17292--17474	89	2.1	89	94	0	321	42	8	10	38	1.71
17705--17736	16	2.0	16	100	0	64	18	18	25	37	1.94
19367--20258	144	6.2	144	90	2	1179	35	14	22	27	1.93
19762--20129	72	5.1	72	59	17	161	36	11	23	28	1.89
21957--22021	15	4.0	15	70	22	51	55	0	0	44	0.99
21950--22023	36	2.1	35	83	11	91	54	0	0	45	1.00
22701--22743	17	2.5	17	80	0	59	51	0	2	46	1.13
23809--23861	18	3.1	17	81	7	72	32	0	0	67	0.91
23804--23850	18	2.6	18	83	10	60	34	2	0	63	1.06
23809--23862	13	4.5	13	71	17	53	33	0	0	66	0.92
24476--24519	18	2.5	18	81	3	54	54	0	0	45	0.99
24533--24581	3	16.7	3	95	4	91	65	0	0	34	0.93
24908--24936	13	2.3	13	94	5	51	24	0	0	75	0.80
25211--25253	19	2.2	20	91	4	70	53	2	0	44	1.13
25806--25839	14	2.4	14	90	0	59	52	0	0	47	1.00
26527--26573	6	7.7	6	78	21	53	63	4	0	31	1.13
27162--27258	49	2.0	49	95	0	176	47	2	8	42	1.45
27277--27316	20	1.9	22	90	10	66	42	0	0	57	0.98
27277--27325	20	2.3	21	86	10	64	40	0	0	59	0.98
28184--28229	22	2.2	22	92	7	78	41	0	8	50	1.33

Tables:   1

The End!