Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168129.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_372, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 30473
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Found at i:1307 original size:21 final size:21
Alignment explanation
Indices: 1269--1312 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1259 GATAAATTAT
*
1269 TTATAATAATTTACAATAGTA
1 TTATAATAATATACAATAGTA
*
1290 TTATAATATATATA-AATATTA
1 TTATAATA-ATATACAATAGTA
1311 TT
1 TT
1313 TATTATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (21 bp):
TTATAATAATATACAATAGTA
Found at i:1386 original size:20 final size:22
Alignment explanation
Indices: 1347--1410 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 22
1337 TAACTATATT
*
1347 TATAAATATTAAATTTATAATT-A
1 TATAATTA-TAAA-TTATAATTAA
1370 -ATAATTATAAATTATAATTAA
1 TATAATTATAAATTATAATTAA
1391 TTATAATTATATAATTATAA
1 -TATAATTATA-AATTATAA
1411 AAATATTATA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
20 8 0.22
21 5 0.14
22 6 0.17
23 9 0.25
24 8 0.22
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
TATAATTATAAATTATAATTAA
Found at i:1393 original size:24 final size:24
Alignment explanation
Indices: 1364--1428 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 24
1354 ATTAAATTTA
1364 TAATTAATAATTATA-AATTATAAT
1 TAATT-ATAATTATATAATTATAAT
*
1388 TAATTATAATTATATAATTATAAA
1 TAATTATAATTATATAATTATAAT
* *
1412 AATATTATATTTATATA
1 TA-ATTATAATTATATA
1429 TTTAAATATA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
23 9 0.25
24 14 0.39
25 13 0.36
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
TAATTATAATTATATAATTATAAT
Found at i:1394 original size:10 final size:10
Alignment explanation
Indices: 1361--1407 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
1351 AATATTAAAT
1361 TTATAATTAA
1 TTATAATTAA
* * *
1371 TAATTATAAA
1 TTATAATTAA
1381 TTATAATTAA
1 TTATAATTAA
1391 TTATAATT-A
1 TTATAATTAA
1400 -TATAATTA
1 TTATAATTA
1408 TAAAAATATT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
8 7 0.23
9 1 0.03
10 22 0.73
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (10 bp):
TTATAATTAA
Found at i:1410 original size:6 final size:6
Alignment explanation
Indices: 1361--1401 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
1351 AATATTAAAT
1361 TTATAA TTAATAA TTATAAA TTATAA -T-TAA TTATAA TTATA
1 TTATAA TT-ATAA TTAT-AA TTATAA TTATAA TTATAA TTATA
1402 TAATTATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
4 3 0.10
5 2 0.06
6 14 0.45
7 12 0.39
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (6 bp):
TTATAA
Found at i:1426 original size:31 final size:29
Alignment explanation
Indices: 1350--1426 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 29
1340 CTATATTTAT
1350 AAATATTAAATTTATAATTAATAATTATAA
1 AAATATT-AATTTATAATTAATAATTATAA
*
1380 ATTATAATTAA-TTATAATTATATAATTATAA
1 A-AAT-ATTAATTTATAATTA-ATAATTATAA
1411 AAATATTATATTTATA
1 AAATATTA-ATTTATA
1427 TATTTAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
29 4 0.10
30 13 0.32
31 20 0.50
32 3 0.08
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (29 bp):
AAATATTAATTTATAATTAATAATTATAA
Found at i:1585 original size:14 final size:14
Alignment explanation
Indices: 1568--1595 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1558 CTTTTTTCAA
1568 AATTAAATTATTAT
1 AATTAAATTATTAT
1582 AATTAAATTATTAT
1 AATTAAATTATTAT
1596 TAGTCATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
AATTAAATTATTAT
Found at i:1803 original size:30 final size:32
Alignment explanation
Indices: 1765--1862 Score: 119
Period size: 34 Copynumber: 3.0 Consensus size: 32
1755 AAAATAAATT
1765 TATTATATAATATATTA-TAATATTATAATAA
1 TATTATATAATATATTATTAATATTATAATAA
* *
1796 TA-TATATAATTTATTATTAAATATTATAATTA
1 TATTATATAATATATTATT-AATATTATAATAA
* *
1828 TATTAATATTATATATAATTAATATTATATATAA
1 TATT-ATATAATATATTATTAATATTATA-ATAA
1862 T
1 T
1863 TAATTACAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
30 13 0.23
31 3 0.05
32 14 0.25
33 10 0.18
34 16 0.29
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (32 bp):
TATTATATAATATATTATTAATATTATAATAA
Found at i:1850 original size:16 final size:16
Alignment explanation
Indices: 1769--1866 Score: 87
Period size: 16 Copynumber: 6.1 Consensus size: 16
1759 TAAATTTATT
* *
1769 ATATAATATATTA-TA
1 ATATTATATATAATTA
1784 ATATTATA-ATAA-TA
1 ATATTATATATAATTA
* * *
1798 TATATAATTTATTATTAA
1 -ATATTATATATAATT-A
1816 ATATTATA-ATTATATTA
1 ATATTATATA-TA-ATTA
1833 ATATTATATATAATTA
1 ATATTATATATAATTA
1849 ATATTATATATAATTA
1 ATATTATATATAATTA
1865 AT
1 AT
1867 TACAAATTTG
Statistics
Matches: 68, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
14 5 0.07
15 13 0.19
16 26 0.38
17 19 0.28
18 5 0.07
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATATTATATATAATTA
Found at i:1854 original size:43 final size:42
Alignment explanation
Indices: 1761--1858 Score: 130
Period size: 41 Copynumber: 2.3 Consensus size: 42
1751 TTAAAAAATA
1761 AATTTATTATATAATATATTATAATATTATAATAATATATAT
1 AATTTATTATATAATATATTATAATATTATAATAATATATAT
*
1803 AATTTATTAT-TAA-ATATTATAAT-TATATTAATATTATATAT
1 AATTTATTATATAATATATTATAATAT-TA-TAATAATATATAT
1844 AATTAATATTATATA
1 AATT--TATTATATA
1859 TAATTAATTA
Statistics
Matches: 50, Mismatches: 1, Indels: 8
0.85 0.02 0.14
Matches are distributed among these distances:
39 1 0.02
40 12 0.24
41 19 0.38
42 10 0.20
43 6 0.12
44 2 0.04
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (42 bp):
AATTTATTATATAATATATTATAATATTATAATAATATATAT
Found at i:1867 original size:41 final size:41
Alignment explanation
Indices: 1790--1868 Score: 106
Period size: 41 Copynumber: 1.9 Consensus size: 41
1780 TATAATATTA
* *
1790 TAATAATATATATAATTTATTATTAAATATTATAATTATAT
1 TAATAATATATATAATTTAATATTAAATATAATAATTATAT
* *
1831 TAATATTATATATAA-TTAATATTATATATAATTAATTA
1 TAATAATATATATAATTTAATATTAAATATAA-TAATTA
1869 CAAATTTGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
40 13 0.39
41 20 0.61
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (41 bp):
TAATAATATATATAATTTAATATTAAATATAATAATTATAT
Found at i:2227 original size:18 final size:18
Alignment explanation
Indices: 2206--2257 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
2196 AATATAATTT
2206 ATTATTTATTAATAATAA
1 ATTATTTATTAATAATAA
* *
2224 ATTACTTATTAATAATTA
1 ATTATTTATTAATAATAA
*
2242 ATAATTTTATT-ATAAT
1 ATTA-TTTATTAATAAT
2258 TTGTTTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 24 0.83
19 5 0.17
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
ATTATTTATTAATAATAA
Found at i:2793 original size:35 final size:34
Alignment explanation
Indices: 2745--2858 Score: 92
Period size: 35 Copynumber: 3.3 Consensus size: 34
2735 TATTTTTTTT
* *
2745 ATATAGTTCATATA-AATTTATAATAATTATTAAATA
1 ATATAATT-ATATATAA-TTATAATAAATATT-AATA
2781 ATATAATTATATATAATTATAATAAATATTAATA
1 ATATAATTATATATAATTATAATAAATATTAATA
* **
2815 AT-TAAGT-TAT-TAATTATGTTAATATAATTAATA
1 ATATAATTATATATAATTATAATAA-AT-ATTAATA
*
2848 CAAATAATTAT
1 -ATATAATTAT
2859 TAATTTTGTA
Statistics
Matches: 65, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
31 10 0.15
32 5 0.08
33 11 0.17
34 7 0.11
35 22 0.34
36 10 0.15
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.45
Consensus pattern (34 bp):
ATATAATTATATATAATTATAATAAATATTAATA
Found at i:2805 original size:19 final size:18
Alignment explanation
Indices: 2762--2818 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 18
2752 TCATATAAAT
2762 TTATAATAATTATTA-AA
1 TTATAATAATTATTATAA
*
2779 TAAT-ATAATTATATATAA
1 TTATAATAATTAT-TATAA
*
2797 TTATAATAAATATTAATAA
1 TTATAATAATTATT-ATAA
2816 TTA
1 TTA
2819 AGTTATTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
16 8 0.24
17 5 0.15
18 6 0.18
19 14 0.42
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TTATAATAATTATTATAA
Found at i:3163 original size:16 final size:17
Alignment explanation
Indices: 3144--3190 Score: 80
Period size: 16 Copynumber: 2.9 Consensus size: 17
3134 ACTATAACTT
3144 ATAATAATAATAA-ATA
1 ATAATAATAATAATATA
3160 ATAATAAT-ATAATATA
1 ATAATAATAATAATATA
3176 ATAATAATAATAATA
1 ATAATAATAATAATA
3191 GTTTCAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
15 4 0.14
16 19 0.66
17 6 0.21
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
ATAATAATAATAATATA
Found at i:3209 original size:3 final size:3
Alignment explanation
Indices: 3144--3190 Score: 71
Period size: 3 Copynumber: 16.0 Consensus size: 3
3134 ACTATAACTT
3144 ATA ATA ATA ATAA ATA ATA ATA AT- ATA AT- ATA ATA ATA ATA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
3188 ATA
1 ATA
3191 GTTTCAATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
2 4 0.10
3 34 0.83
4 3 0.07
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:3259 original size:24 final size:24
Alignment explanation
Indices: 3203--3307 Score: 65
Period size: 24 Copynumber: 4.3 Consensus size: 24
3193 TTCAATTTGT
*
3203 TAATAATTTATAATAATTATATTA
1 TAATAATTTATAATAATAATATTA
* *
3227 TAGTAAATTTAT-ATAATAATCTTAA
1 TAAT-AATTTATAATAATAATATT-A
*
3252 TAATAA-TTACAATTAA-AATATTAA
1 TAATAATTTATAA-TAATAATATT-A
* *
3276 TTACATAA-TAATAATTATAATATTA
1 -TA-ATAATTTATAATAATAATATTA
*
3301 TATTAAT
1 TAATAAT
3308 ATGTTATACA
Statistics
Matches: 63, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
23 6 0.10
24 24 0.38
25 19 0.30
26 14 0.22
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (24 bp):
TAATAATTTATAATAATAATATTA
Found at i:3284 original size:26 final size:27
Alignment explanation
Indices: 3254--3305 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
3244 AATCTTAATA
*
3254 ATAATTACAATTAAAATATTA-ATTAC
1 ATAATAACAATTAAAATATTATATTAC
* *
3280 ATAATAATAATTATAATATTATATTA
1 ATAATAACAATTAAAATATTATATTA
3306 ATATGTTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (27 bp):
ATAATAACAATTAAAATATTATATTAC
Found at i:3285 original size:14 final size:13
Alignment explanation
Indices: 3240--3308 Score: 56
Period size: 12 Copynumber: 5.4 Consensus size: 13
3230 TAAATTTATA
*
3240 TAATAATCTTAA-
1 TAATAATATTAAT
*
3252 TAATAAT-TACAAT
1 TAATAATAT-TAAT
3265 TAA-AATATTAAT
1 TAATAATATTAAT
*
3277 TACATAATAATAAT
1 TA-ATAATATTAAT
3291 T-ATAATATTATAT
1 TAATAATATTA-AT
3304 TAATA
1 TAATA
3309 TGTTATACAT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
11 1 0.02
12 25 0.54
13 8 0.17
14 12 0.26
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (13 bp):
TAATAATATTAAT
Found at i:3292 original size:18 final size:20
Alignment explanation
Indices: 3249--3292 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 20
3239 ATAATAATCT
3249 TAATAA-TAATTACAATTAA
1 TAATAATTAATTACAATTAA
3268 -AAT-ATTAATTAC-A-TAA
1 TAATAATTAATTACAATTAA
3284 TAATAATTA
1 TAATAATTA
3293 TAATATTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
16 3 0.14
17 5 0.23
18 14 0.64
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (20 bp):
TAATAATTAATTACAATTAA
Found at i:3931 original size:14 final size:14
Alignment explanation
Indices: 3901--3941 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
3891 TTATTAATAT
*
3901 TTATGATAAATTAA
1 TTATAATAAATTAA
3915 TTACTAATAAA-TAA
1 TTA-TAATAAATTAA
3929 TTATAAT-AATTAA
1 TTATAATAAATTAA
3942 AGATAAACTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
12 2 0.08
13 7 0.29
14 9 0.38
15 6 0.25
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (14 bp):
TTATAATAAATTAA
Found at i:4211 original size:23 final size:23
Alignment explanation
Indices: 4182--4255 Score: 73
Period size: 23 Copynumber: 3.1 Consensus size: 23
4172 TACTAGATAA
4182 AATTAAATAATTATAAATATTAT
1 AATTAAATAATTATAAATATTAT
4205 AATTAAAT-ATTATATTAAT-TTAT
1 AATTAAATAATTATA--AATATTAT
*
4228 AAATATAATATATT-TAAATTATTAT
1 AATTA-AATA-ATTATAAA-TATTAT
4253 AAT
1 AAT
4256 ATAATATATA
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
22 6 0.14
23 18 0.43
24 7 0.17
25 8 0.19
26 3 0.07
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
AATTAAATAATTATAAATATTAT
Found at i:4213 original size:13 final size:13
Alignment explanation
Indices: 4195--4255 Score: 53
Period size: 13 Copynumber: 5.0 Consensus size: 13
4185 TAAATAATTA
4195 TAAATATTATAAT
1 TAAATATTATAAT
4208 TAAATATTAT-AT
1 TAAATATTATAAT
*
4220 T-AAT-TTATAAA
1 TAAATATTATAAT
4231 TATAATA-TAT--T
1 TA-AATATTATAAT
4242 TAAATTATTATAAT
1 TAAA-TATTATAAT
4256 ATAATATATA
Statistics
Matches: 38, Mismatches: 2, Indels: 15
0.69 0.04 0.27
Matches are distributed among these distances:
10 6 0.16
11 9 0.24
12 6 0.16
13 16 0.42
14 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
TAAATATTATAAT
Found at i:4232 original size:19 final size:19
Alignment explanation
Indices: 4208--4268 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
4198 ATATTATAAT
4208 TAAATATTATATTAATTTA
1 TAAATATTATATTAATTTA
*
4227 TAAATATAATA-T-ATTTA
1 TAAATATTATATTAATTTA
* *
4244 -AATTATTATAATATAATATA
1 TAAATATTAT-AT-TAATTTA
4264 TAAAT
1 TAAAT
4269 TGTTAAATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
16 7 0.22
17 6 0.19
18 1 0.03
19 11 0.34
20 4 0.12
21 3 0.09
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
TAAATATTATATTAATTTA
Found at i:4232 original size:32 final size:36
Alignment explanation
Indices: 4188--4268 Score: 91
Period size: 37 Copynumber: 2.4 Consensus size: 36
4178 ATAAAATTAA
*
4188 ATAA-TTATAAATATT-ATAATTAAA-TATTAT-AT
1 ATAATTTATAAATATATATAATTAAATTATTATAAT
*
4220 -TAATTTATAAATATAATATATTTAAATTATTATAAT
1 ATAATTTATAAATAT-ATATAATTAAATTATTATAAT
*
4256 ATAATATATAAAT
1 ATAATTTATAAAT
4269 TGTTAAATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
31 3 0.08
32 10 0.25
34 8 0.20
35 6 0.15
36 2 0.05
37 11 0.28
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (36 bp):
ATAATTTATAAATATATATAATTAAATTATTATAAT
Found at i:4299 original size:22 final size:22
Alignment explanation
Indices: 4206--4306 Score: 86
Period size: 22 Copynumber: 4.7 Consensus size: 22
4196 AAATATTATA
* *
4206 ATTAAATATTAT-A-TTAATTT
1 ATTAAATATAATAATTTAAATT
4226 A-TAAATATAATATATTTAAATT
1 ATTAAATATAATA-ATTTAAATT
*
4248 ATTATAATATAAT-ATATAAATT
1 ATTA-AATATAATAATTTAAATT
* * *
4270 GTTAAATTTAATAATTTAATTT
1 ATTAAATATAATAATTTAAATT
*
4292 ATTAAAT-TAGTAATT
1 ATTAAATATAATAATT
4307 GTATAGATTA
Statistics
Matches: 66, Mismatches: 9, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
19 9 0.14
20 1 0.02
21 15 0.23
22 31 0.47
23 2 0.03
24 8 0.12
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
ATTAAATATAATAATTTAAATT
Found at i:4354 original size:12 final size:12
Alignment explanation
Indices: 4339--4397 Score: 52
Period size: 12 Copynumber: 4.9 Consensus size: 12
4329 TTTTATTATC
4339 TATATTATTAAA
1 TATATTATTAAA
*
4351 TATATTAATAAA
1 TATATTATTAAA
4363 TAAATATT-TTAAA
1 T--ATATTATTAAA
4376 TA-ATTAATTAAA
1 TATATT-ATTAAA
*
4388 T-TATAATTAA
1 TATATTATTAA
4398 TCATTAATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 11
0.74 0.06 0.21
Matches are distributed among these distances:
10 3 0.08
11 6 0.15
12 20 0.51
13 5 0.13
14 5 0.13
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
TATATTATTAAA
Found at i:5369 original size:11 final size:10
Alignment explanation
Indices: 5352--5392 Score: 55
Period size: 11 Copynumber: 3.8 Consensus size: 10
5342 TCTTTTTTGG
5352 TTTTTTTTAT
1 TTTTTTTTAT
5362 TTTATTTTTAT
1 TTT-TTTTTAT
5373 GTTTTTTTTAGT
1 -TTTTTTTTA-T
5385 TTTTTTTT
1 TTTTTTTT
5393 GCATGATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
10 3 0.11
11 21 0.75
12 4 0.14
ACGTcount: A:0.10, C:0.00, G:0.05, T:0.85
Consensus pattern (10 bp):
TTTTTTTTAT
Found at i:5369 original size:22 final size:21
Alignment explanation
Indices: 5344--5393 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
5334 TCATTTCGTC
5344 TTTTTTGGTTTTTTTTA-TTT
1 TTTTTTGGTTTTTTTTAGTTT
*
5364 TATTTTTATGTTTTTTTTAGTTT
1 T-TTTTT-GGTTTTTTTTAGTTT
5387 TTTTTTG
1 TTTTTTG
5394 CATGATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
20 1 0.04
21 5 0.20
22 15 0.60
23 4 0.16
ACGTcount: A:0.08, C:0.00, G:0.10, T:0.82
Consensus pattern (21 bp):
TTTTTTGGTTTTTTTTAGTTT
Found at i:5615 original size:15 final size:15
Alignment explanation
Indices: 5595--5630 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
5585 TTTCTAACAA
5595 AAAAATATAAAATAT
1 AAAAATATAAAATAT
*
5610 AAAAATATAAAGTAT
1 AAAAATATAAAATAT
5625 AAAAAT
1 AAAAAT
5631 TTTGGAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (15 bp):
AAAAATATAAAATAT
Found at i:9748 original size:24 final size:24
Alignment explanation
Indices: 9720--9767 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
9710 AAAAGGTCTC
*
9720 AAAGAGAGAAAGAAAA-ACAAAATG
1 AAAGAAAGAAAGAAAAGA-AAAATG
*
9744 AAAGAAAGAGAGAAAAGAAAAATG
1 AAAGAAAGAAAGAAAAGAAAAATG
9768 CCATAAACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.71, C:0.02, G:0.23, T:0.04
Consensus pattern (24 bp):
AAAGAAAGAAAGAAAAGAAAAATG
Found at i:10132 original size:9 final size:9
Alignment explanation
Indices: 10118--10200 Score: 118
Period size: 9 Copynumber: 9.6 Consensus size: 9
10108 CTAATGGATG
*
10118 GAAAAAGAT
1 GAAAAAAAT
10127 G-AAAAAAT
1 GAAAAAAAT
10135 GAAAAAAAT
1 GAAAAAAAT
*
10144 TAAAAAAAT
1 GAAAAAAAT
10153 GAAAAAAAT
1 GAAAAAAAT
10162 GAAAAAAAT
1 GAAAAAAAT
10171 GAAAAAAA-
1 GAAAAAAAT
*
10179 AAAAAAAAT
1 GAAAAAAAT
10188 GAAAAAAA-
1 GAAAAAAAT
10196 GAAAA
1 GAAAA
10201 TGAGAGAAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
8 19 0.28
9 48 0.72
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.10
Consensus pattern (9 bp):
GAAAAAAAT
Found at i:10148 original size:26 final size:26
Alignment explanation
Indices: 10118--10200 Score: 114
Period size: 26 Copynumber: 3.2 Consensus size: 26
10108 CTAATGGATG
*
10118 GAAAAAGATGAAAAAATGAAAAAAAT
1 GAAAAAAATGAAAAAATGAAAAAAAT
*
10144 TAAAAAAATGAAAAAAATGAAAAAAAT
1 GAAAAAAATG-AAAAAATGAAAAAAAT
**
10171 GAAAAAAAAAAAAAAATGAAAAAAA-
1 GAAAAAAATGAAAAAATGAAAAAAAT
10196 GAAAA
1 GAAAA
10201 TGAGAGAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
25 5 0.10
26 23 0.45
27 23 0.45
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.10
Consensus pattern (26 bp):
GAAAAAAATGAAAAAATGAAAAAAAT
Found at i:10158 original size:35 final size:35
Alignment explanation
Indices: 10118--10200 Score: 125
Period size: 35 Copynumber: 2.4 Consensus size: 35
10108 CTAATGGATG
* *
10118 GAAAAAGATG-AAAAAATGAAAAAAATTAAAAAAAT
1 GAAAAAAATGAAAAAAATGAAAAAAA-AAAAAAAAT
10153 GAAAAAAATGAAAAAAATGAAAAAAAAAAAAAAAT
1 GAAAAAAATGAAAAAAATGAAAAAAAAAAAAAAAT
10188 GAAAAAAA-GAAAA
1 GAAAAAAATGAAAA
10201 TGAGAGAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
34 5 0.11
35 25 0.56
36 15 0.33
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.10
Consensus pattern (35 bp):
GAAAAAAATGAAAAAAATGAAAAAAAAAAAAAAAT
Found at i:10216 original size:16 final size:14
Alignment explanation
Indices: 10157--10203 Score: 64
Period size: 13 Copynumber: 3.5 Consensus size: 14
10147 AAAAATGAAA
10157 AAAATGAAAAAAATG
1 AAAATGAAAAAAA-G
10172 AAAA--AAAAAAA-
1 AAAATGAAAAAAAG
10183 AAAATGAAAAAAAG
1 AAAATGAAAAAAAG
10197 AAAATGA
1 AAAATGA
10204 GAGAAAAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
11 4 0.14
13 14 0.48
14 7 0.24
15 4 0.14
ACGTcount: A:0.81, C:0.00, G:0.11, T:0.09
Consensus pattern (14 bp):
AAAATGAAAAAAAG
Found at i:11393 original size:21 final size:21
Alignment explanation
Indices: 11328--11393 Score: 89
Period size: 21 Copynumber: 3.1 Consensus size: 21
11318 AGAATTTTTA
11328 AGTTCTCAAATG-GGAATCTTTG
1 AGTT-TCAAATGAGG-ATCTTTG
* *
11350 AATTTCAAATGAGAATCTTTG
1 AGTTTCAAATGAGGATCTTTG
11371 AGTTTCAAATGAGGATCTTTG
1 AGTTTCAAATGAGGATCTTTG
11392 AG
1 AG
11394 GTGTGAAACC
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
21 35 0.90
22 4 0.10
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (21 bp):
AGTTTCAAATGAGGATCTTTG
Found at i:11462 original size:42 final size:43
Alignment explanation
Indices: 11416--11516 Score: 120
Period size: 42 Copynumber: 2.4 Consensus size: 43
11406 AAAGTTCATC
* *
11416 GGATGTGAATCTTCAAA-CTAGAATG-AAAAGTTTTGAACA-TTT
1 GGATGTGAATCTTCAAAGCTAGAATGAAAAAG-CTT-AAAATTTT
* *
11458 GGATGTGAATCTTCAAAGTTCGAATGAAAAAGCTTAAAATTTT
1 GGATGTGAATCTTCAAAGCTAGAATGAAAAAGCTTAAAATTTT
11501 GGATGTGAATC-TCAAA
1 GGATGTGAATCTTCAAA
11517 TTTGTCAAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
42 25 0.48
43 22 0.42
44 5 0.10
ACGTcount: A:0.39, C:0.10, G:0.20, T:0.32
Consensus pattern (43 bp):
GGATGTGAATCTTCAAAGCTAGAATGAAAAAGCTTAAAATTTT
Found at i:11886 original size:42 final size:42
Alignment explanation
Indices: 11827--12068 Score: 272
Period size: 42 Copynumber: 5.7 Consensus size: 42
11817 CATGATTGTC
*
11827 GAGGAGCATTTTATTTTCTAAAGTTGTGGTTGCCTCTATTTA
1 GAGGAGCATTTTATTTTCCAAAGTTGTGGTTGCCTCTATTTA
** * *
11869 GAGGAGCATTTTATTTTCCAAAGTAATGGTTGCCTTTGTTTA
1 GAGGAGCATTTTATTTTCCAAAGTTGTGGTTGCCTCTATTTA
* * *
11911 TAAGAGCATTTTATTTTTCCAAAGTTATGGTTGCCTCTATTTA
1 GAGGAGCATTTTA-TTTTCCAAAGTTGTGGTTGCCTCTATTTA
* * *
11954 AAGGAGCATTTTATTTTCCAAAGTTGTGGTTACCTTTGA-TTA
1 GAGGAGCATTTTATTTTCCAAAGTTGTGGTTGCCTCT-ATTTA
* *** * *
11996 GAGAAGCAACATATTTTCCAAAGTTGTGG-TGCTTCTGTTTA
1 GAGGAGCATTTTATTTTCCAAAGTTGTGGTTGCCTCTATTTA
* *
12037 GAGGAGCAATTTATTTTTTCAAAGTTGTGGTT
1 GAGGAGCATTTTA-TTTTCCAAAGTTGTGGTT
12069 AGCATTGGCA
Statistics
Matches: 167, Mismatches: 28, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
41 17 0.10
42 111 0.66
43 39 0.23
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43
Consensus pattern (42 bp):
GAGGAGCATTTTATTTTCCAAAGTTGTGGTTGCCTCTATTTA
Found at i:12055 original size:127 final size:126
Alignment explanation
Indices: 11828--12068 Score: 308
Period size: 127 Copynumber: 1.9 Consensus size: 126
11818 ATGATTGTCG
* * * ***
11828 AGGAGCATTTTATTTTCTAAAGTTGTGGTTGCCTCTATTTAGAGGAGCATTTTATTTTCCAAAGT
1 AGGAGCATTTTATTTTCCAAAGTTGTGGTTACCTCTATTTAGAGAAGCAACATATTTTCCAAAGT
* *
11893 AATGGTTGCCTTTGTTTATAAGAGCATTTTATTTTTCCAAAGTTATGGTTGCCTCTATTTAA
66 AATGGTTGCCTTTGTTTAGAAGAGCAATTTATTTTT-CAAAGTTATGGTTGCCTCTATTTAA
*
11955 AGGAGCATTTTATTTTCCAAAGTTGTGGTTACCTTTGA-TTAGAGAAGCAACATATTTTCCAAAG
1 AGGAGCATTTTATTTTCCAAAGTTGTGGTTACCTCT-ATTTAGAGAAGCAACATATTTTCCAAAG
** * *
12019 TTGTGG-TG-CTTCTGTTTAGAGGAGCAATTTATTTTTTCAAAGTTGTGGTT
65 TAATGGTTGCCTT-TGTTTAGAAGAGCAATTTA-TTTTTCAAAGTTATGGTT
12069 AGCATTGGCA
Statistics
Matches: 98, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
125 3 0.03
126 30 0.31
127 64 0.65
128 1 0.01
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43
Consensus pattern (126 bp):
AGGAGCATTTTATTTTCCAAAGTTGTGGTTACCTCTATTTAGAGAAGCAACATATTTTCCAAAGT
AATGGTTGCCTTTGTTTAGAAGAGCAATTTATTTTTCAAAGTTATGGTTGCCTCTATTTAA
Found at i:12056 original size:85 final size:84
Alignment explanation
Indices: 11838--12069 Score: 288
Period size: 85 Copynumber: 2.8 Consensus size: 84
11828 AGGAGCATTT
* ** *
11838 TATTTTCTAAAGTTGTGGTTGCCTCTATTTAGAGGAGCATTTTATTTTCCAAAGTAATGGTTGCC
1 TATTTTCCAAAGTTGTGGTTGCCTCTATTTAGAGGAGCATTTTATTTTCCAAAGTTGTGGTTACC
* * ***
11903 TTTGTTTATAAGAGCATTT
66 TTTGATTAGAAGAGCAACA
* *
11922 TATTTTTCCAAAGTTATGGTTGCCTCTATTTAAAGGAGCATTTTATTTTCCAAAGTTGTGGTTAC
1 TA-TTTTCCAAAGTTGTGGTTGCCTCTATTTAGAGGAGCATTTTATTTTCCAAAGTTGTGGTTAC
11987 CTTTGATTAG-AGAAGCAACA
65 CTTTGATTAGAAG-AGCAACA
* * * *
12007 TATTTTCCAAAGTTGTGG-TGCTTCTGTTTAGAGGAGCAATTTATTTTTTCAAAGTTGTGGTTA
1 TATTTTCCAAAGTTGTGGTTGCCTCTATTTAGAGGAGCATTTTA-TTTTCCAAAGTTGTGGTTA
12070 GCATTGGCAG
Statistics
Matches: 128, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
83 21 0.16
84 37 0.29
85 70 0.55
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (84 bp):
TATTTTCCAAAGTTGTGGTTGCCTCTATTTAGAGGAGCATTTTATTTTCCAAAGTTGTGGTTACC
TTTGATTAGAAGAGCAACA
Found at i:12265 original size:8 final size:8
Alignment explanation
Indices: 12254--12281 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
12244 TAATTTTTTA
12254 TTTATATT
1 TTTATATT
12262 TTTATATT
1 TTTATATT
12270 TTTATATT
1 TTTATATT
12278 TTTA
1 TTTA
12282 AAAAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTATATT
Found at i:12269 original size:14 final size:15
Alignment explanation
Indices: 12241--12281 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
12231 AAAAAATATT
12241 TTTTA-ATTTTT-TA
1 TTTTATATTTTTATA
12254 -TTTATATTTTTATA
1 TTTTATATTTTTATA
12268 TTTTTATATTTTTA
1 -TTTTATATTTTTA
12282 AAAAATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 4 0.17
13 6 0.25
14 2 0.08
16 12 0.50
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTATATTTTTATA
Found at i:12303 original size:21 final size:23
Alignment explanation
Indices: 12269--12318 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 23
12259 ATTTTTATAT
12269 TTTTATATTTTTAAAAAATA-AA
1 TTTTATATTTTTAAAAAATACAA
*
12291 TTTTATA-TTTTAAAAAATACTA
1 TTTTATATTTTTAAAAAATACAA
12313 TTTTAT
1 TTTTAT
12319 TAATTTCGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
21 12 0.46
22 14 0.54
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (23 bp):
TTTTATATTTTTAAAAAATACAA
Found at i:12553 original size:40 final size:43
Alignment explanation
Indices: 12481--12585 Score: 137
Period size: 42 Copynumber: 2.5 Consensus size: 43
12471 TGCCAACACT
* *
12481 AGTTATGGTGCCTCTA-TTAGAGGAGCATTTTA-TTTT-TGAA
1 AGTTGTGGTGCCTCTATTTAGAGGAGCATTTTATTTTTCTCAA
12521 AGTTGTGGTGCCTCTATTTAGAGGAGCA-TTTATTTTTCTCAA
1 AGTTGTGGTGCCTCTATTTAGAGGAGCATTTTATTTTTCTCAA
* * *
12563 AGTCGTTGAGCCTCTATTTAGAG
1 AGTTGTGGTGCCTCTATTTAGAG
12586 CAGCCTTGTT
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
40 19 0.33
41 15 0.26
42 23 0.40
ACGTcount: A:0.23, C:0.13, G:0.23, T:0.41
Consensus pattern (43 bp):
AGTTGTGGTGCCTCTATTTAGAGGAGCATTTTATTTTTCTCAA
Found at i:13766 original size:9 final size:9
Alignment explanation
Indices: 13752--13792 Score: 59
Period size: 9 Copynumber: 4.8 Consensus size: 9
13742 CAACAAAAAA
13752 ATAAAATAT
1 ATAAAATAT
*
13761 ATAAAAAAT
1 ATAAAATAT
13770 ATAAAA-AT
1 ATAAAATAT
13778 ATAAAATAT
1 ATAAAATAT
13787 A-AAAAT
1 ATAAAAT
13793 TTTGGAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 13 0.43
9 17 0.57
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (9 bp):
ATAAAATAT
Found at i:13768 original size:17 final size:17
Alignment explanation
Indices: 13746--13792 Score: 64
Period size: 15 Copynumber: 2.9 Consensus size: 17
13736 TATTTTCAAC
13746 AAAAAA-ATAAAATATAT
1 AAAAAATATAAAA-ATAT
13763 AAAAAATATAAAAATAT
1 AAAAAATATAAAAATAT
13780 --AAAATATAAAAAT
1 AAAAAATATAAAAAT
13793 TTTGGAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 13 0.45
17 10 0.34
18 6 0.21
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (17 bp):
AAAAAATATAAAAATAT
Found at i:14808 original size:405 final size:406
Alignment explanation
Indices: 14055--14866 Score: 1554
Period size: 405 Copynumber: 2.0 Consensus size: 406
14045 ATTTCCTCTA
*
14055 AATTTGGCCCAAATGGTGGAATAATTTAGATGAAATTTCAATAAAACTAATTGCATATTATTTTC
1 AATTTGGCCCAAATGGTGGAATAATTTAGATGAAATTTCAATAAAAATAATTGCATATTATTTTC
14120 TTTCAAAAAAAAAAAGAAATTCTAAATAGGCCTAAATGGTGAAAAATTTAAAAATTCAAAAAGAG
66 TTTC-AAAAAAAAAAGAAATTCTAAATAGGCCTAAATGGTGAAAAATTTAAAAATTCAAAAAGAG
14185 AAAATATTTCTAATTTGGCCCAAATGGTGGAATAATTAGATATATTTTTGACAAAAATAATAATA
130 AAAATATTTCTAATTTGGCCCAAATGGTGGAATAATTAGATATATTTTTGACAAAAATAATAATA
14250 ATAAATAAACCTTTTTTCCAACGATAGAGCCTTTTCAAGATATTAAATAGGATTCTTGAATACTC
195 ATAAATAAACCTTTTTTCCAACGATAGAGCCTTTTCAAGATATTAAATAGGATTCTTGAATACTC
*
14315 TTGAGGTGAGAAAATATTTTTAAAAGTTCTACTAGATTGATGGAGGATTTTATAAATTATTTCCA
260 TTGAGGTGAGAAAATATTTTTAAAAGTTCTACCAGATTGATGGAGGATTTTATAAATTATTTCCA
14380 ATATTTAAACATAAAAATTTGAAACCATTAGACTAAAAATTTAAAATAAAATGGTACCATCCTTT
325 ATATTTAAACATAAAAATTTGAAACCATTAGACTAAAAATTTAAAATAAAATGGTACCATCCTTT
14445 GGATGGGCATATAGGGG
390 GGATGGGCATATAGGGG
*
14462 AATTTGGCCCAAATGGTGGCATAATTTAGATGAAATTTCAATAAAAATAATTGCATATTATTTTC
1 AATTTGGCCCAAATGGTGGAATAATTTAGATGAAATTTCAATAAAAATAATTGCATATTATTTTC
*
14527 TTTC-AAAAAAAAAGAAATTCTAAATAGGCCTAAATGGTGAAAAATTTAGAAATTCAAAAAGAGA
66 TTTCAAAAAAAAAAGAAATTCTAAATAGGCCTAAATGGTGAAAAATTTAAAAATTCAAAAAGAGA
14591 AAATATTTCTAATTTGGCCCAAATGGTGGAATAATTAGATATATTTTTGACAAAAATAATAATAA
131 AAATATTTCTAATTTGGCCCAAATGGTGGAATAATTAGATATATTTTTGACAAAAATAATAATAA
* *
14656 TAAATAAACCTTTTTTCCAACGATGGAGCCTTTTCAAGATATTAAATGGGATTCTTGAATACTCT
196 TAAATAAACCTTTTTTCCAACGATAGAGCCTTTTCAAGATATTAAATAGGATTCTTGAATACTCT
14721 TGAGGTGAGAAAATATTTTTAAAAGTTCTACCAGATTGATGGAGGATTTTATAAATTATTTCCAA
261 TGAGGTGAGAAAATATTTTTAAAAGTTCTACCAGATTGATGGAGGATTTTATAAATTATTTCCAA
14786 TATTTAAACATAAAAATTTGAAACCATTAGACTAAAAATTTAAAATAAAATGGTACCATCCTTTG
326 TATTTAAACATAAAAATTTGAAACCATTAGACTAAAAATTTAAAATAAAATGGTACCATCCTTTG
14851 GATGGGCATATAGGGG
391 GATGGGCATATAGGGG
14867 TGTTATAACC
Statistics
Matches: 399, Mismatches: 6, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
405 332 0.83
407 67 0.17
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.33
Consensus pattern (406 bp):
AATTTGGCCCAAATGGTGGAATAATTTAGATGAAATTTCAATAAAAATAATTGCATATTATTTTC
TTTCAAAAAAAAAAGAAATTCTAAATAGGCCTAAATGGTGAAAAATTTAAAAATTCAAAAAGAGA
AAATATTTCTAATTTGGCCCAAATGGTGGAATAATTAGATATATTTTTGACAAAAATAATAATAA
TAAATAAACCTTTTTTCCAACGATAGAGCCTTTTCAAGATATTAAATAGGATTCTTGAATACTCT
TGAGGTGAGAAAATATTTTTAAAAGTTCTACCAGATTGATGGAGGATTTTATAAATTATTTCCAA
TATTTAAACATAAAAATTTGAAACCATTAGACTAAAAATTTAAAATAAAATGGTACCATCCTTTG
GATGGGCATATAGGGG
Found at i:15847 original size:168 final size:168
Alignment explanation
Indices: 15539--15850 Score: 382
Period size: 168 Copynumber: 1.9 Consensus size: 168
15529 TAATAAATTT
* *
15539 ATATTATTTTATTCAAAATACGCTTGCATGAACAGAACCAATTGTTTTATGACAAAACAAAATGT
1 ATATTATTTTATTCAAAATACGCTTACATGAACAGAACCAATTATTTTATGACAAAACAAAATGT
* * * * * *
15604 CATAATGTTTTGAAATAGATAATTGTTTAGATAGTCATAACTATTTCAACTTGATCAATAAGAAA
66 CACAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTCAACTTGATCAACAAGAAA
15669 ATTCATTTTTTTAATTCTGTTACTCTTTAATTTTTGAA
131 ATTCATTTTTTTAATTCTGTTACTCTTTAATTTTTGAA
* * *
15707 ATATTATTTTATCTC-AAATAGGCTTATATGAACTG-ACGCAATTATTTTACT-ACAAAACAAAA
1 ATATTATTTTAT-TCAAAATACGCTTACATGAACAGAAC-CAATTATTTTA-TGACAAAACAAAA
* * * * *
15769 -GCTCACAATGATTTGAAATAGATTATTATTCAAATAGTCATGACTATTTGAACTTGTTCAGCAA
63 TG-TCACAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTCAACTTGATCAACAA
* *
15833 -ACATATTTATTTTTTTAA
127 GA-AAATTCATTTTTTTAA
15851 ATGTTTTACT
Statistics
Matches: 121, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
167 4 0.03
168 114 0.94
169 3 0.02
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (168 bp):
ATATTATTTTATTCAAAATACGCTTACATGAACAGAACCAATTATTTTATGACAAAACAAAATGT
CACAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTCAACTTGATCAACAAGAAA
ATTCATTTTTTTAATTCTGTTACTCTTTAATTTTTGAA
Found at i:16025 original size:181 final size:181
Alignment explanation
Indices: 15745--16128 Score: 476
Period size: 178 Copynumber: 2.1 Consensus size: 181
15735 TGAACTGACG
** *
15745 CAATTATTTTACT-ACAAAAC-AAAAGCTCACAATGATTTGAAATAGATTATTATTCAAATAGTC
1 CAATTATTTTA-TGACAAAACAAAAAGCTCACAACAATTTGAAATAGAATATTATTCAAATAGTC
* * * * * *
15808 ATGACTATTTGAACTTGTTCAGCAAACATATTTATTTTTTTAAATGTTTTACTTATAAATTGT-T
65 ATAACGATTTGAACGTATTCAGCAAACAGATTTA--TTTTTAAATCTTTTACTTATAAATTGTCT
** * *
15872 GAAATATTAATAAATTAATATTATTTTATTCCGAATAAGCTAGTATGAATA-AAAA
128 -AAAT-TTAATAAATTAATATTATTTTATTCAAAATAAGCTAGTACGAACATAAAA
* *
15927 CAATTGTTTTATGACAAAACAAAAAG-TCATAACAATTTGAAATA-AATATTATTCAAATAGTCA
1 CAATTATTTTATGACAAAACAAAAAGCTCACAACAATTTGAAATAGAATATTATTCAAATAGTCA
* * *
15990 TAACGATTTGAACGTATTCAGTAAACAGATTTATTTTTAAATCTTTTACTTATTAATTGTCTTAA
66 TAACGATTTGAACGTATTCAGCAAACAGATTTATTTTTAAATCTTTTACTTATAAATTGTCTAAA
* *
16055 TTTAATAAATTTATATTATTTTATTCAAAATAAGCTTGTACGAACATAAAA
131 TTTAATAAATTAATATTATTTTATTCAAAATAAGCTAGTACGAACATAAAA
* *
16106 -AATCATTTTATGACAAAGCAAAA
1 CAATTATTTTATGACAAAACAAAA
16129 GGTTATAGTG
Statistics
Matches: 175, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
178 59 0.34
179 32 0.18
180 1 0.01
181 46 0.26
182 32 0.18
183 5 0.03
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.39
Consensus pattern (181 bp):
CAATTATTTTATGACAAAACAAAAAGCTCACAACAATTTGAAATAGAATATTATTCAAATAGTCA
TAACGATTTGAACGTATTCAGCAAACAGATTTATTTTTAAATCTTTTACTTATAAATTGTCTAAA
TTTAATAAATTAATATTATTTTATTCAAAATAAGCTAGTACGAACATAAAA
Found at i:16319 original size:16 final size:17
Alignment explanation
Indices: 16287--16319 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
16277 AGAAAAGGTC
16287 ATAACAATTTGAAATAG
1 ATAACAATTTGAAATAG
*
16304 ATAACTATTT-AAATAG
1 ATAACAATTTGAAATAG
16320 TCATGACTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.33
Consensus pattern (17 bp):
ATAACAATTTGAAATAG
Found at i:17617 original size:181 final size:181
Alignment explanation
Indices: 16574--18379 Score: 1391
Period size: 181 Copynumber: 10.1 Consensus size: 181
16564 TTATTTAAAT
* * * * * * * * **
16574 AAAAGGTCATAACGATTTGAAATAAAGAATTGTTCATATAGCCTTTAA-TATTTGAACTAGTTCA
1 AAAATGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTC-ATAACTATTTGAACTTGTTTG
* * * * *
16638 GTAAACAAATTTATTTTGTAAATCTCTTAGTTATTAATTTTTAGAATATTATTATATTAGTATTA
65 GTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAAATTAGTATTA
** * * * * * *
16703 TTTTATTTTGAATAAACTTGTGTGAATAGAAATAATTGTTTTATGAGATAAC
130 TTTTATTTCAAATAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAAC
* * * * **
16755 AAAAGGTTATAACAATTTGAAATATATAATTGTTCAAATAGTCATAACTATTTGAA-TCGGTTCA
1 AAAATGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT-TGTTTG
* * * *
16819 GTAAACATATTAACTTTTTAAA--TCTT--TTATTAATTTTT-GAAATATTAGTAAATTAGTATT
65 GTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAG-AATATTAATAAATTAGTATT
* * *
16879 ATTTTATTTCAAATAGGCTTGTATG-ATGGAAAACAATTGTTTTATGACAAAAC
129 ATTTTATTTCAAATAAGCTTGTATGAATAG-AAACAATTATTTTATGACAAAAC
* * * * * **
16932 AAAA-GTTCATAACGATTTGAAATAGATAATTATTCAAATGGCCATAATTATTTGAA-TAATTTG
1 AAAATG-TCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTG
* * * ** * ** *
16995 ATAAACTGATTTATTTTTTAAAACTCCAACTTCTTAATTTTT-GAAATATTAATAAAGCAATATT
65 GTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAG-AATATTAATAAATTAGTATT
* * * * * * * *
17059 ATTTTATTT-AGGAAAAAG-TTTTATGTACT-GAAATAGTTGTTTTATGATAAAAT
129 ATTTTATTTCA--AATAAGCTTGTATG-AATAGAAACAATTATTTTATGACAAAAC
* ** * * *
17112 AAAAGGTCATAATGATTTTAAATA-ATAATTGTTCAAATAGTCATAACTATTTGAACTTATTCGG
1 AAAATGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGG
* * * * *
17176 TAAATAGA--T-TTTTTTAAA-AT-TT-CTTATTAATTTTTAAAAT-TTAATGAATTAGTATTAC
66 TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAAATTAGTATTAT
* * * * * *
17234 TATATTTCGAATAAGCATGTATGAACT-TAAACAATTATTTTTTGACTAAAC
131 TTTATTTCAAATAAGCTTGTATGAA-TAGAAACAATTATTTTATGACAAAAC
* * *
17285 AAAA-GATCAGAACAATTTGAAATAGATAATTGTTCTAATAGTCTTAACTATTTGAA-TTGCTTT
1 AAAATG-TCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTG-TTT
** ** * *
17348 GAAAAACATTTTTATTTTTT-AA--TC---CTTATTAATTTTT-GAAATAGTAATAAATTGGTAT
64 GGTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAG-AATATTAATAAATTAGTAT
* ** * * *
17406 TATTTTA-TTCTGAATAATTTTGTATGAATAGAAATAATTATTTTATAATAAAAC
128 TATTTTATTTC-AAATAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAAC
** * * ** * * * * *
17460 AAAATGTCATAATGATTTAAAATAAATAACAGCTCAAATGGACATGACTATTTAAACTTGTTTGG
1 AAAATGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGG
* * *
17525 TAAACAGATTTATTTTTTAAATCTCTAACTTGTTAATTTTTAGAATAATAATAAATTAGTATTAT
66 TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAAATTAGTATTAT
* * * * *
17590 TTTATTCCAAATAAACTTGTGTGAATAGAAACAATTGTTTTATGACAAACC
131 TTTATTTCAAATAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAAC
* * * * * *
17641 AAAATATCATAAAAATTTGAAATATATAATTGTTCAAATAGTAATAACTATTTGAACTTGCTCGG
1 AAAATGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGG
* * * * * *
17706 TAAACAAATTTATTATTTAAATTTTTTAGTTATTAA-TTTTAGAAATATTAATAAATTAATATTA
66 TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAG-AATATTAATAAATTAGTATTA
** * * * **
17770 TTTTATTTTGAATGAGCTTATATGAATAGAAATAATTGGTTTATGACAAAAC
130 TTTTATTTCAAATAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAAC
* * * * **
17822 AAATTGTCATAACAATTTGAAATAGATAATTGTTTAAATAGTCAAAACCA-TTGAA-TGTGTTCA
1 AAAATGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT-TGTTTG
** * * * * * * * * *
17885 AAAAACATATTTAGTTTTTAAAT-TTTTATTTGTTAACTTTTGGAGTTTTAATAAATT--TATGT
65 GTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAAATTAGTAT-T
* *
17947 AATTTTA-TTCGAAATAAGCTTGCATGAACA-AAACTAATTATTTTATGACAAAAC
129 -ATTTTATTTC-AAATAAGCTTGTATGAATAGAAAC-AATTATTTTATGACAAAAC
*** * * *
18001 -AAATGGTCATAATGTTTTGAAATAGATAATTATTTAGATAGTCATAACTATTTGAACTTGTTTG
1 AAAAT-GTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTG
* * * * * * *
18065 GTAAATAGATTCATTTTTTTAAT-TCTTACTCATTAATTTTTGGTATATTAATAAATTAG-AGCT
65 GTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAAATTAGTA-TT
* * * * *
18128 ATTTTATTTCAAATAAGCTTATGTTAACT-GAAACAATTATTTTATTACAAAAT
129 ATTTTATTTCAAATAAGCTTGTATGAA-TAGAAACAATTATTTTATGACAAAAC
* * ** * * * *
18181 AAAAGGTCAAAATTATTTGAAATAGATAATTATTCAAATAGTCTTGACTATTGGAACTTGTTTGG
1 AAAATGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGG
* * * * *
18246 TAAACATATTTATTTTTTAAAATCT-TTCACTTATTAATTGTCAAAATATTAATAAATTAATATT
66 TAAACAGATTTATTTTTT-AAATCTCTT-ACTTATTAATTTTTAGAATATTAATAAATTAGTATT
* * * * *
18310 ATTTTAATCCGAATAAGCTTGTATGAACAGAAACAATTATTTTATTACAAAAC
129 ATTTTATTTCAAATAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAAC
*
18363 AAAAAGTCATAACAATT
1 AAAATGTCATAACAATT
18380 CTGTTTACAA
Statistics
Matches: 1286, Mismatches: 277, Indels: 123
0.76 0.16 0.07
Matches are distributed among these distances:
172 7 0.01
173 61 0.05
174 71 0.06
175 109 0.08
176 34 0.03
177 136 0.11
178 14 0.01
179 131 0.10
180 290 0.23
181 344 0.27
182 88 0.07
183 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (181 bp):
AAAATGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGG
TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAAATTAGTATTAT
TTTATTTCAAATAAGCTTGTATGAATAGAAACAATTATTTTATGACAAAAC
Found at i:18000 original size:179 final size:183
Alignment explanation
Indices: 16640--18379 Score: 648
Period size: 180 Copynumber: 9.7 Consensus size: 183
16630 CTAGTTCAGT
* * * * * *
16640 AAACAAATTTATT-TTGTAAATCTCTTAGTTATTAATTTTTAG-AATATTATTATATTAGTATTA
1 AAACAAATTTATTATT-TAAATTTTTTAGTTATTAA-TTTTAGAAATATTAATAAATTAATATAA
* * * * * ** *
16703 TTTTATTTTG-AATAAACTTGTGTGAATAGAAA-TAATTGTTTTATGAGATAACAAAAGGTTATA
64 TTTTA-TTCGAAATAAGCTTGTATGAATAGAAACTAATTGTTTTATGACAAAACAAATTGTCATA
* * * * * * **
16766 ACAATTTGAAATATATAATTGTTCAAATAGTC-ATAACTATTTGAA-TCGGTTCAGT
128 AAAATTTGAAATAGATAATTGTTTAAATAGTCAATAACCATTTGAACT-TGCTCAAA
* * * * * * *
16821 AAACATATTAACTT-TTTAAA--TCTT--TTATTAATTTTTGAAATATTAGTAAATTAGTATTAT
1 AAACAAATTTA-TTATTTAAATTTTTTAGTTATTAATTTTAGAAATATTAATAAATTAATATAAT
* * *
16881 TTTATTTC-AAATAGGCTTGTATG-ATGGAAAAC-AATTGTTTTATGACAAAACAAA-AGTTCAT
65 TTTA-TTCGAAATAAGCTTGTATGAATAG-AAACTAATTGTTTTATGACAAAACAAATTG-TCAT
** * * * * ** *** ** *
16942 AACGATTTGAAATAGATAATTATTCAAAT-GGCCATAATTATTTGAA-TAATTTGAT
127 AAAAATTTGAAATAGATAATTGTTTAAATAGTCAATAACCATTTGAACTTGCTCAAA
** * ** *** * * * ** *
16997 AAACTGATTTATTTTTTAAAACTCCAACTTCTTAATTTTTGAAATATTAATAAAGCAATATTATT
1 AAACAAATTTATTATTTAAATTTTTTAGTTATTAATTTTAGAAATATTAATAAATTAATATAATT
* * * * * * **
17062 TTATTTAGGAAA-AAG-TTTTATGTACT-GAAA-TAGTTGTTTTATGATAAAATAAAAGGTCATA
66 TTA-TT-CGAAATAAGCTTGTATG-AATAGAAACTAATTGTTTTATGACAAAACAAATTGTCATA
** * * * ** ***
17123 ATGATTTTAAATA-ATAATTGTTCAAATAGTC-ATAACTATTTGAACTTATTCGGT
128 AAAATTTGAAATAGATAATTGTTTAAATAGTCAATAACCATTTGAACTTGCTCAAA
* * * * * * * * *
17177 AAATAGATTT-TT-TTAAAATTTCTTA-TTA--ATTTTTA-AAAT-TTAATGAATTAGTATTACT
1 AAACAAATTTATTATTTAAATTTTTTAGTTATTAATTTTAGAAATATTAATAAATTAATATAATT
* * * * * * * *
17235 ATATTTCG-AATAAGCATGTATGAACT-TAAAC-AATTATTTTTTGACTAAACAAA-AGATCAGA
66 TTA-TTCGAAATAAGCTTGTATGAA-TAGAAACTAATTGTTTTATGACAAAACAAATTG-TCATA
* * * **
17296 ACAATTTGAAATAGATAATTGTTCT-AATAGTC-TTAACTATTTGAA-TTGCTTTGAA
128 AAAATTTGAAATAGATAATTGTT-TAAATAGTCAATAACCATTTGAACTTGC-TCAAA
** ** * * ** *
17351 AAAC--ATTT-TTATTT---TTTAATCCTTATTAATTTTTGAAATAGTAATAAATTGGTATTATT
1 AAACAAATTTATTATTTAAATTTTTTAGTTATTAATTTTAGAAATATTAATAAATTAATATAATT
** * * * * *
17410 TTATTCTG-AATAATTTTGTATGAATAGAAA-TAATTATTTTATAATAAAACAAAATGTCATAAT
66 TTATTC-GAAATAAGCTTGTATGAATAGAAACTAATTGTTTTATGACAAAACAAATTGTCATAAA
* * * ** * * * * * * * * ****
17473 GATTTAAAATAAATAACAGCTCAAATGGAC-ATGACTATTTAAACTTGTTTGGT
130 AATTTGAAATAGATAATTGTTTAAATAGTCAATAACCATTTGAACTTGCTCAAA
* * * * * * * * * *
17526 AAACAGATTTATTTTTTAAATCTCTAACTTGTTAATTTTTAG-AATAATAATAAATTAGTATTAT
1 AAACAAATTTATTATTTAAATTTTTTAGTTATTAA-TTTTAGAAATATTAATAAATTAATATAAT
* * * * * *
17590 TTTATTCCAAATAAACTTGTGTGAATAGAAAC-AATTGTTTTATGACAAACCAAAATATCATAAA
65 TTTATTCGAAATAAGCTTGTATGAATAGAAACTAATTGTTTTATGACAAAACAAATTGTCATAAA
* * * ***
17654 AATTTGAAATATATAATTGTTCAAATAGT-AATAACTATTTGAACTTGCTCGGT
130 AATTTGAAATAGATAATTGTTTAAATAGTCAATAACCATTTGAACTTGCTCAAA
*
17707 AAACAAATTTATTATTTAAATTTTTTAGTTATTAATTTTAGAAATATTAATAAATTAATATTATT
1 AAACAAATTTATTATTTAAATTTTTTAGTTATTAATTTTAGAAATATTAATAAATTAATATAATT
* * * * *
17772 TTATTTTG-AATGAGCTTATATGAATAGAAA-TAATTGGTTTATGACAAAACAAATTGTCATAAC
66 TTA-TTCGAAATAAGCTTGTATGAATAGAAACTAATTGTTTTATGACAAAACAAATTGTCATAAA
*
17835 AATTTGAAATAGATAATTGTTTAAATAGTCAA-AACCA-TTGAA-TGTGTTCAAA
130 AATTTGAAATAGATAATTGTTTAAATAGTCAATAACCATTTGAACT-TGCTCAAA
* * * * * * * *
17887 AAACATATTTAGTT-TTTAAA-TTTTTATTTGTTAACTTTT-GGAGTTTTAATAAATTTATGTAA
1 AAACAAATTTA-TTATTTAAATTTTTTAGTTATTAA-TTTTAGAAATATTAATAAATTAATATAA
* * * *
17949 TTTTATTCGAAATAAGCTTGCATGAACA-AAACTAATTATTTTATGACAAAACAAATGGTCATAA
64 TTTTATTCGAAATAAGCTTGTATGAATAGAAACTAATTGTTTTATGACAAAACAAATTGTCATAA
*** * * * * ****
18013 TGTTTTGAAATAGATAATTATTTAGATAGTC-ATAACTATTTGAACTTGTTTGGT
129 AAATTTGAAATAGATAATTGTTTAAATAGTCAATAACCATTTGAACTTGCTCAAA
* * * * * * * * * ** **
18067 AAATAGATTCATTTTTTTAA-TTCTTACTCATTAATTTTTGGTATATTAATAAATTAGAGCT-AT
1 AAACAAATTTATTATTTAAATTTTTTAGTTATTAATTTTAGAAATATTAATAAATTA-ATATAAT
* * * * * * **
18130 TTTATTTC-AAATAAGCTTATGTTAACT-GAAAC-AATTATTTTATTACAAAATAAAAGGTCA-A
65 TTTA-TTCGAAATAAGCTTGTATGAA-TAGAAACTAATTGTTTTATGACAAAACAAATTGTCATA
* * * * * * * * ****
18191 AATTATTTGAAATAGATAATTATTCAAATAGTC-TTGACTATTGGAACTTGTTTGGT
128 AA-AATTTGAAATAGATAATTGTTTAAATAGTCAATAACCATTTGAACTTGCTCAAA
* * * * * * *
18247 AAACATATTTATTTTTTAAAATCTTTCACTTATTAATTGTCA-AAATATTAATAAATTAATATTA
1 AAACAAATTTATTATTT-AAATTTTTTAGTTATTAATT-TTAGAAATATTAATAAATTAATATAA
* * * * **
18311 TTTTAATCCG-AATAAGCTTGTATGAACAGAAAC-AATTATTTTATTACAAAACAAAAAGTCATA
64 TTTT-ATTCGAAATAAGCTTGTATGAATAGAAACTAATTGTTTTATGACAAAACAAATTGTCATA
*
18374 ACAATT
128 AAAATT
18380 CTGTTTACAA
Statistics
Matches: 1216, Mismatches: 266, Indels: 153
0.74 0.16 0.09
Matches are distributed among these distances:
170 4 0.00
171 5 0.00
172 12 0.01
173 67 0.06
174 45 0.04
175 101 0.08
176 32 0.03
177 116 0.10
178 22 0.02
179 147 0.12
180 282 0.23
181 282 0.23
182 97 0.08
183 4 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (183 bp):
AAACAAATTTATTATTTAAATTTTTTAGTTATTAATTTTAGAAATATTAATAAATTAATATAATT
TTATTCGAAATAAGCTTGTATGAATAGAAACTAATTGTTTTATGACAAAACAAATTGTCATAAAA
ATTTGAAATAGATAATTGTTTAAATAGTCAATAACCATTTGAACTTGCTCAAA
Found at i:18794 original size:16 final size:17
Alignment explanation
Indices: 18762--18794 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
18752 GACCAATACA
18762 AACAATTATGACTATTTG
1 AACAATTAT-ACTATTTG
18780 AACAATTAT-CTATTT
1 AACAATTATACTATTT
18795 CAAATCATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.42
Consensus pattern (17 bp):
AACAATTATACTATTTG
Found at i:18952 original size:181 final size:180
Alignment explanation
Indices: 18396--18980 Score: 612
Period size: 181 Copynumber: 3.2 Consensus size: 180
18386 ACAAAACTAT
* * * ** * * * *
18396 TTCAAATAATTATGGCTATTTGAATAATTATCTGTTTCAAATTGTTATTACCTTTTGGTTTATTA
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACATTTTGTTTTATCA
* * * *
18461 TAAAACAAATGTTTTTGTTCATATAAGTTTGTTTGGAATAAAATAATAT-TAATTTATTAATATT
66 TAAAACAATTGTTTTTGTTCATATAAGCTTATTCGGAAT-AAATAAT-TCTAATTTATTAATATT
* * *
18525 TCAAAAATTAATATGTAAGAGATTTAAAAAATAAATCTGTTTGCC-ATACCAG
129 TCAAAAATTAATAAGTAAGAGATTTAAAAAATGAATCTGTTTGCCGA-ACCAA
* * * * * *
18577 TTCAATTAGTTATAACTATTTGACCAAATATTTATTTCAAATCATTATGACCA-TTTGTTTTATC
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA-CATTTTGTTTTATC
* * * * *
18641 ATAAAAAAATTGTTTCTATTCATATAATCTTATTCGGAATAAAGTAATGCTAATTTATTAATATT
65 ATAAAACAATTGTTTTTGTTCATATAAGCTTATTCGGAATAAA-TAATTCTAATTTATTAATATT
** * * * *
18706 TTGAAAATTTATAAGTAATG-GATTTAGAAAATGTATCT-TTTGGCTTG-ACCAA
129 TCAAAAATTAATAAGTAA-GAGATTTAAAAAATGAATCTGTTT-GC-CGAACCAA
* * *
18758 TACAAACAATTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACATTTTGTTTTCTCA
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACATTTTGTTTTATCA
* * ** *
18823 CAAAACAATTGTTTTTGTTCATACAAGCTTATTCAAAATAACATAATTCTAATTTATTAATATTC
66 TAAAACAATTGTTTTTGTTCATATAAGCTTATTCGGAATAA-ATAATTCTAATTTATTAATATTT
* *
18888 CAAAAATTAATAAGTGAA-AGATTTAAAAAATGAATCTGTTTACCGAACAAA
130 CAAAAATTAATAAGT-AAGAGATTTAAAAAATGAATCTGTTTGCCGAACCAA
18939 TTCAAATAATTATGGA-TATTTGAACAATTATCTAGTTT-AAAT
1 TTCAAATAATTAT-GACTATTTGAACAATTATCTA-TTTCAAAT
18981 TGCTATAATC
Statistics
Matches: 327, Mismatches: 62, Indels: 30
0.78 0.15 0.07
Matches are distributed among these distances:
180 9 0.03
181 305 0.93
182 13 0.04
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.42
Consensus pattern (180 bp):
TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACATTTTGTTTTATCA
TAAAACAATTGTTTTTGTTCATATAAGCTTATTCGGAATAAATAATTCTAATTTATTAATATTTC
AAAAATTAATAAGTAAGAGATTTAAAAAATGAATCTGTTTGCCGAACCAA
Found at i:19676 original size:181 final size:178
Alignment explanation
Indices: 19062--20035 Score: 951
Period size: 181 Copynumber: 5.4 Consensus size: 178
19052 AATAATTTTG
* * * * *
19062 AATAGTTATGACTAGTGGAACAATTATTTATTTCAAATCGTTAGGA-CATTT-TTTTGTCATAAA
1 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAA
* * * ** * * * * * *
19125 ACAATTATTTTTGTTCATATTAGCTTATTCGGATTAAAATAATATTACTTTATTAATATTTTAAC
66 ACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAA-
*
19190 AATTAATAAGTAAAAGATTTAAAAAATAAATATATTTACCGAACAAGTTCA
130 AATTAATAAGTAAAA-ATTTAAAAAATAAATTTATTTACCGAAC-AGTTCA
* * * * * * *
19241 AATAGTAATAACTATTTGAATAATTATCTATTTCAAATTGTTATGACCTTTTATTTCGCCATAAA
1 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAA
* * * * * * * *
19306 ACAATTATATCAATTCATATAGGCTTATTTGAAATAAAATAATACTAACTTATTACTATTCCAAA
66 ACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTC-AA
* * *
19371 AATTAATAAGTAAGAGATTTAAAAAATAAAATCTATTTACCAAACAAGTTCA
130 AATTAATAAGTAA-AAATTTAAAAAAT-AAATTTATTTACCGAAC-AGTTCA
* * *
19423 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATAACCTTTTATTTT-TCCATAA
1 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGT-CATAA
* * * *
19487 AACAATTGTTTCTGTTCATACAAGCTTATTTTAAATAAAATAATA-TAAATTTACTAATATTCCA
65 AACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAATAATACT-AATTTATTAATATTTCA
* * * ***
19551 AAGATTAATAAGTAAAAATATATAAAATAAATTTGTTTTTTGAACATGTTCAA
129 AA-ATTAATAAGTAAAAATTTAAAAAATAAATTTATTTACCGAACA-GTTC-A
*
19604 AATAGTTATGACCATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAA
1 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAA
* * * * *
19669 CCAATTGTTTTTATTCATAAAAGCTTATTCGAAATAAAATAATACTAATTTATTAAAATTTCAAA
66 ACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTC-AA
* * * **
19734 AATTAATAAGTAAAATATTTTAAAAATTAATTTATTTACTGAGTGAGTTCA
130 AATTAATAAGTAAAA-ATTTAAAAAATAAATTTATTTACCGA-ACAGTTCA
* * * * * * *
19785 AATAATTATGACTATTTAAATAATTATTTATTTCAAATCATTATAATCC-TTTGTTTTGTAATAA
1 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGA-CCTTTTGTTTTGTCATAA
* ** * *
19849 AACAATCGTTTCTATTCATACAAAATTA-TTCAAGATAAAATAATACTAATTTATTAATATTTTG
65 AACAATTGTTTCTATTCATACAAGCTTATTTGAA-ATAAAATAATACTAATTTATTAATA-TTTC
* * * * * * *
19913 AAAATTAATAAG---AGATTTAAAAACTATATTTGTTTATCGGACCAATTCA
128 AAAATTAATAAGTAAAAATTTAAAAAATAAATTTATTTA-CCGAACAGTTCA
* * * * *
19962 AATAGTTATGACTCTTTGAATAATTATCTATCTCAAATCGGTATGATC-TTTGTTTTGTCATAAA
1 AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAA
*
20026 ATAATTGTTT
66 ACAATTGTTT
20036 TTGTCTAGAC
Statistics
Matches: 660, Mismatches: 116, Indels: 41
0.81 0.14 0.05
Matches are distributed among these distances:
176 24 0.04
177 60 0.09
178 4 0.01
179 39 0.06
180 22 0.03
181 332 0.50
182 178 0.27
183 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (178 bp):
AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAA
ACAATTGTTTCTATTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAA
ATTAATAAGTAAAAATTTAAAAAATAAATTTATTTACCGAACAGTTCA
Found at i:20110 original size:19 final size:20
Alignment explanation
Indices: 20082--20125 Score: 56
Period size: 18 Copynumber: 2.2 Consensus size: 20
20072 TAACTAAGAT
*
20082 TAAATAATAATTTATTTAATA
1 TAAATAATAA-TAATTTAATA
20103 -AAAT-ATAATAATTTAATA
1 TAAATAATAATAATTTAATA
20121 TAAAT
1 TAAAT
20126 TAGATATTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 9 0.43
19 8 0.38
20 4 0.19
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TAAATAATAATAATTTAATA
Found at i:20355 original size:27 final size:26
Alignment explanation
Indices: 20316--20382 Score: 77
Period size: 25 Copynumber: 2.6 Consensus size: 26
20306 TTAAAACAAT
20316 AATACTAAT-AATATATATTAT-TTTA
1 AATA-TAATAAATATATATTATATTTA
*
20341 ATTATAATTAAA-ATATATTATATTTA
1 AATATAA-TAAATATATATTATATTTA
20367 AATATAATATAATATA
1 AATATAATA-AATATA
20383 CATGTCAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
24 3 0.09
25 15 0.43
26 14 0.40
27 3 0.09
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (26 bp):
AATATAATAAATATATATTATATTTA
Found at i:20360 original size:16 final size:16
Alignment explanation
Indices: 20341--20379 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
20331 TATTATTTTA
20341 ATTATAATTAAAATAT
1 ATTATAATTAAAATAT
*
20357 ATTAT-ATTTAAATAT
1 ATTATAATTAAAATAT
*
20372 AATATAAT
1 ATTATAAT
20380 ATACATGTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
ATTATAATTAAAATAT
Found at i:20561 original size:24 final size:23
Alignment explanation
Indices: 20503--20561 Score: 59
Period size: 22 Copynumber: 2.5 Consensus size: 23
20493 ATTCATAAGT
*
20503 ATAAATATTTATTAATACATTATA
1 ATAAATA-TTATTAATACATTACA
*
20527 ATAAATA-TATTAA-ATATTACA
1 ATAAATATTATTAATACATTACA
20548 ATAAAATAGTTATT
1 AT-AAATA-TTATT
20562 TTATTTTGGA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
21 8 0.27
22 11 0.37
24 11 0.37
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (23 bp):
ATAAATATTATTAATACATTACA
Found at i:20871 original size:9 final size:8
Alignment explanation
Indices: 20799--20895 Score: 69
Period size: 8 Copynumber: 12.0 Consensus size: 8
20789 CTAATTTTAA
20799 TATAATTAT
1 TATAA-TAT
*
20808 TATTATAT
1 TATAATAT
*
20816 T-TCATAT
1 TATAATAT
*
20823 TGTAATAT
1 TATAATAT
20831 TATAAT-T
1 TATAATAT
20838 ATATAATAT
1 -TATAATAT
20847 TATAACTAT
1 TATAA-TAT
20856 TATTAATAGT
1 TA-TAATA-T
20866 TATAAT-T
1 TATAATAT
20873 TATTAAT-T
1 TA-TAATAT
20881 TAT-ATAT
1 TATAATAT
*
20888 TAAAATAT
1 TATAATAT
20896 ATATTAATAG
Statistics
Matches: 74, Mismatches: 5, Indels: 19
0.76 0.05 0.19
Matches are distributed among these distances:
6 2 0.03
7 14 0.19
8 36 0.49
9 16 0.22
10 6 0.08
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (8 bp):
TATAATAT
Found at i:20901 original size:41 final size:43
Alignment explanation
Indices: 20825--20908 Score: 113
Period size: 41 Copynumber: 2.0 Consensus size: 43
20815 TTTCATATTG
*
20825 TAATATTATAATTATATAATATTATAACTATTATTAATAGTTA
1 TAATATTATAATTATATAATATTATAAATATTATTAATAGTTA
20868 TAAT-TTATTAATT-TAT-ATATTA-AAATATATATTAATAGTTA
1 TAATATTA-TAATTATATAATATTATAAATAT-TATTAATAGTTA
20909 AGGTCATAAC
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
40 5 0.13
41 18 0.47
42 6 0.16
43 9 0.24
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.50
Consensus pattern (43 bp):
TAATATTATAATTATATAATATTATAAATATTATTAATAGTTA
Found at i:21145 original size:17 final size:18
Alignment explanation
Indices: 21116--21172 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
21106 ATTAATAATT
21116 ATTAATATAAATAG-TAA
1 ATTAATATAAATAGATAA
21133 ATTAA-ATAGAATAGATAA
1 ATTAATATA-AATAGATAA
* *
21151 ATTAATTTAAATATATAA
1 ATTAATATAAATAGATAA
21169 ATTA
1 ATTA
21173 TCCATAATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
16 3 0.09
17 10 0.29
18 20 0.57
19 2 0.06
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (18 bp):
ATTAATATAAATAGATAA
Found at i:21168 original size:18 final size:17
Alignment explanation
Indices: 21101--21172 Score: 67
Period size: 18 Copynumber: 4.2 Consensus size: 17
21091 AATATTAGTT
* *
21101 TTAATATTAATAAT-TA
1 TTAATATAAATAATAAA
*
21117 TTAATATAAATAGTAAA
1 TTAATATAAATAATAAA
21134 TTAA-ATAGAATAGATAAA
1 TTAATATA-AATA-ATAAA
*
21152 TTAATTTAAATATATAAA
1 TTAATATAAATA-ATAAA
21170 TTA
1 TTA
21173 TCCATAATAA
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
16 15 0.33
17 9 0.20
18 20 0.43
19 2 0.04
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (17 bp):
TTAATATAAATAATAAA
Found at i:21787 original size:20 final size:18
Alignment explanation
Indices: 21752--21801 Score: 66
Period size: 20 Copynumber: 2.7 Consensus size: 18
21742 ATTTAATTAT
21752 TAATTAATAATTATTAAA
1 TAATTAATAATTATTAAA
21770 TAATTGAATAATTTATTAAA
1 TAATT-AATAA-TTATTAAA
*
21790 TATTTAA-AATTA
1 TAATTAATAATTA
21802 ATTATTATCC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 3 0.10
18 7 0.24
19 7 0.24
20 12 0.41
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (18 bp):
TAATTAATAATTATTAAA
Found at i:21907 original size:17 final size:17
Alignment explanation
Indices: 21877--21937 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
21867 AATATTTTAA
*
21877 AATATTTATTATAATTAT
1 AATA-TTATAATAATTAT
*
21895 AATATTATAATAAATA-
1 AATATTATAATAATTAT
*
21911 AATAATTATTATAATTGAT
1 AAT-ATTATAATAATT-AT
21930 AA-ATTATA
1 AATATTATA
21938 CTGTTTGAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
16 3 0.09
17 25 0.71
18 5 0.14
19 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (17 bp):
AATATTATAATAATTAT
Found at i:22284 original size:177 final size:177
Alignment explanation
Indices: 21941--22419 Score: 476
Period size: 177 Copynumber: 2.7 Consensus size: 177
21931 AATTATACTG
* * * * *
21941 TTTGAACAATTATATATTTCAAATCATTATTACTTTTTGTTTTGTCATACAACAAATGTTTTTGT
1 TTTGAACAATTATATATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTAT
* * *
22006 TCATATAAGTTTATTCGAAATAAAGTAATACTAATCTATTAATATTTCAAAAATTAATAAGTGAT
66 TCATATAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTGAT
* * ** * * * ** * *
22071 TTAGACAATAAATCTATGTATCAAACTAGTTCAAATAGTTTTGACTA
131 ATAAACAATAAAAATATGTACCAAACTAGATCAAATAATCATAACAA
* * ** *
22118 TTTGAGCAATTATTTATTTCAAATCATTATGACTTTTTGTTTTGTTGTAAAATAATTGTTTCTAT
1 TTTGAACAATTATATATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTAT
* * * * * * *
22183 TCATACAAGCTTATTTGCATTAAAATAATACTAATTTATTAATATTTTAACAATTAGTAAGT-A-
66 TCATATAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTGAT
*** * *
22246 ATAAATTTTAAAAATATGTTTACCACACTCGATCAAATAATCATAACAA
131 ATAAACAATAAAAATATG--TACCAAACTAGATCAAATAATCATAACAA
* * *** * * * * *
22295 TTTGAATAATTATCTATTTCAAATTGCTATGACCTTTTGATTTGTCATAAAAGAGTTGTTTCAAT
1 TTTGAACAATTATATATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTAT
* * * *
22360 TCATATAAGCTTATTCAAAATAAAACAATACTAATTTATTAATAATCCAAAAATTAATAA
66 TCATATAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAA
22420 TAAAGAGATT
Statistics
Matches: 240, Mismatches: 60, Indels: 4
0.79 0.20 0.01
Matches are distributed among these distances:
175 11 0.05
176 1 0.00
177 228 0.95
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.42
Consensus pattern (177 bp):
TTTGAACAATTATATATTTCAAATCATTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTAT
TCATATAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTGAT
ATAAACAATAAAAATATGTACCAAACTAGATCAAATAATCATAACAA
Found at i:22614 original size:134 final size:134
Alignment explanation
Indices: 22457--22703 Score: 449
Period size: 134 Copynumber: 1.8 Consensus size: 134
22447 TACTAAACAA
* * *
22457 ATTTAAATAATTAAGACTATTTGAATAATTATCTATTTGAAATAGCTATAACGTTTTGTTTTGTA
1 ATTTAAAAAATTAAGACTATTTGAATAATCATCTATTTGAAATAGCTATAACATTTTGTTTTGTA
*
22522 ATAAAATAATTTTTTTTGTTCATCTAAGCTTATTTCGAATAAAATAATCCAAAAATTAATAATAA
66 ATAAAAGAATTTTTTTTGTTCATCTAAGCTTATTTCGAATAAAATAATCCAAAAATTAATAATAA
22587 AGAG
131 AGAG
22591 ATTTAAAAAATTAAGACTATTTGAATAATCATCTATTTGAAATAGCTATAACATTTTGTTTTGTA
1 ATTTAAAAAATTAAGACTATTTGAATAATCATCTATTTGAAATAGCTATAACATTTTGTTTTGTA
*
22656 ATAAAAGAATTTTTTTTGTTCATCTAGGCTTATTTCGAATAAAATAAT
66 ATAAAAGAATTTTTTTTGTTCATCTAAGCTTATTTCGAATAAAATAAT
22704 ATAAATTTAT
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
134 108 1.00
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (134 bp):
ATTTAAAAAATTAAGACTATTTGAATAATCATCTATTTGAAATAGCTATAACATTTTGTTTTGTA
ATAAAAGAATTTTTTTTGTTCATCTAAGCTTATTTCGAATAAAATAATCCAAAAATTAATAATAA
AGAG
Found at i:23833 original size:23 final size:24
Alignment explanation
Indices: 23807--23860 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
23797 TTAATTATAT
23807 AAATAAAT-TAGATT-TAATATTTA
1 AAATAAATATAGATTATAATA-TTA
* *
23830 AAATTAATATATATTATAATATTA
1 AAATAAATATAGATTATAATATTA
23854 AATATAA
1 AA-ATAA
23861 CTAGTAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 7 0.28
24 10 0.40
25 8 0.32
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (24 bp):
AAATAAATATAGATTATAATATTA
Found at i:24004 original size:14 final size:14
Alignment explanation
Indices: 23985--24033 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
23975 TTAATATATT
23985 AATTTATAATAATA
1 AATTTATAATAATA
23999 AATTTAATAA-AAT-
1 AATTT-ATAATAATA
*
24012 AA-TTATAAATTATA
1 AATTTAT-AATAATA
24026 AATTTATA
1 AATTTATA
24034 TATTTTTAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 10
0.73 0.03 0.25
Matches are distributed among these distances:
11 2 0.07
12 4 0.14
13 4 0.14
14 11 0.38
15 8 0.28
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AATTTATAATAATA
Found at i:24142 original size:17 final size:17
Alignment explanation
Indices: 24116--24193 Score: 68
Period size: 17 Copynumber: 4.3 Consensus size: 17
24106 AAATAACAAG
* *
24116 TTTATAATTAGTTATAA
1 TTTATTATTAATTATAA
*
24133 TTTATTATTAATTTTATA
1 TTTATTATTAATTATA-A
24151 TTTATCTATTTAATATATAA
1 TTTAT-TA-TTAAT-TATAA
24171 TTCATATTATTAATTA-AA
1 TT--TATTATTAATTATAA
24189 TTTAT
1 TTTAT
24194 ATATAAGTTA
Statistics
Matches: 51, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
16 3 0.06
17 13 0.25
18 10 0.20
19 4 0.08
20 13 0.25
21 5 0.10
22 3 0.06
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (17 bp):
TTTATTATTAATTATAA
Found at i:24317 original size:21 final size:21
Alignment explanation
Indices: 24248--24321 Score: 61
Period size: 17 Copynumber: 3.7 Consensus size: 21
24238 TTATTCAATT
*
24248 ATTTT-ATTTATTATTATAATAA
1 ATTTTAATTTATTA-AAT-ATAA
24270 ATATTTAA-TTATTAAATAT-A
1 AT-TTTAATTTATTAAATATAA
*
24290 A--TT-ATTTATTAAGTATAA
1 ATTTTAATTTATTAAATATAA
24308 ATTTTAATTTATTA
1 ATTTTAATTTATTA
24322 TATAATTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
16 1 0.02
17 12 0.28
18 2 0.05
20 4 0.09
21 10 0.23
22 4 0.09
23 9 0.21
24 1 0.02
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (21 bp):
ATTTTAATTTATTAAATATAA
Found at i:24330 original size:17 final size:18
Alignment explanation
Indices: 24272--24331 Score: 56
Period size: 17 Copynumber: 3.3 Consensus size: 18
24262 TATAATAAAT
24272 ATTTAA-TTATTAAATATA
1 ATTTAATTTATT-AATATA
24290 A-TT-ATTTATTAAGTATAA
1 ATTTAATTTATTAA-TAT-A
24308 ATTTTAATTTATT-ATATA
1 A-TTTAATTTATTAATATA
24326 ATTTAA
1 ATTTAA
24332 CTATATAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
16 3 0.08
17 15 0.42
18 5 0.14
19 3 0.08
20 3 0.08
21 7 0.19
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
ATTTAATTTATTAATATA
Found at i:24890 original size:25 final size:24
Alignment explanation
Indices: 24856--24920 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 24
24846 TACATGCGTA
*
24856 TTAATTATTAATATTTAAT-AATTTGT
1 TTAA-TATTAATATTTAATCAA--TAT
*
24882 TTAATATTAATATATAATCAATAT
1 TTAATATTAATATTTAATCAATAT
24906 TT-ATATTAATATTTA
1 TTAATATTAATATTTA
24921 TTTAATAGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
23 12 0.34
24 4 0.11
25 13 0.37
26 6 0.17
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.54
Consensus pattern (24 bp):
TTAATATTAATATTTAATCAATAT
Found at i:24952 original size:19 final size:20
Alignment explanation
Indices: 24930--24974 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
24920 ATTTAATAGC
24930 TTAATTAT-ATTAGAA-ATAA
1 TTAATTATAATTA-AATATAA
24949 TTAATTATAATTAAATATAA
1 TTAATTATAATTAAATATAA
24969 -TAATTA
1 TTAATTA
24975 ATAGTATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
TTAATTATAATTAAATATAA
Found at i:24983 original size:12 final size:11
Alignment explanation
Indices: 24887--25020 Score: 65
Period size: 12 Copynumber: 11.1 Consensus size: 11
24877 TTTGTTTAAT
24887 ATTAATATATA
1 ATTAATATATA
* *
24898 ATCAATATTTA
1 ATTAATATATA
*
24909 TATTAATATTTA
1 -ATTAATATATA
*
24921 TTTAATAGCT-TA
1 ATTAATA--TATA
*
24933 ATTATATTAGAAATA
1 ATTA-A-T--ATATA
24948 ATTAAT-TATA
1 ATTAATATATA
24958 ATTAAATATAATA
1 ATT-AATAT-ATA
24971 ATTAATAGTATA
1 ATTAATA-TATA
24983 ATTAATAAATATTA
1 ATTAAT--ATA-TA
* *
24997 ATTACTTTAGTA
1 ATTAATATA-TA
25009 ATTAATATATA
1 ATTAATATATA
25020 A
1 A
25021 AACTGGTTAT
Statistics
Matches: 96, Mismatches: 12, Indels: 30
0.70 0.09 0.22
Matches are distributed among these distances:
10 6 0.06
11 21 0.22
12 40 0.42
13 12 0.12
14 10 0.10
15 6 0.06
16 1 0.01
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (11 bp):
ATTAATATATA
Found at i:24996 original size:22 final size:25
Alignment explanation
Indices: 24944--24998 Score: 75
Period size: 23 Copynumber: 2.4 Consensus size: 25
24934 TTATATTAGA
24944 AATAATTAAT--TATAATTAAATAT
1 AATAATTAATAGTATAATTAAATAT
24967 AATAATTAATAGTATAATT-AATA-
1 AATAATTAATAGTATAATTAAATAT
24990 AAT-ATTAAT
1 AATAATTAAT
24999 TACTTTAGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.20
23 13 0.43
24 4 0.13
25 7 0.23
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (25 bp):
AATAATTAATAGTATAATTAAATAT
Found at i:25501 original size:35 final size:34
Alignment explanation
Indices: 25451--25526 Score: 88
Period size: 35 Copynumber: 2.2 Consensus size: 34
25441 TAATTTTAAA
25451 AATTTTA-AAAAATTA-TA-AA-TATTATAATTTGAT
1 AATTTTATAAAAATTATTATAATTATTAT-A-TT-AT
25484 AATTTTATAACAAATTATTATAATTATTATATTAT
1 AATTTTATAA-AAATTATTATAATTATTATATTAT
25519 AATTTTAT
1 AATTTTAT
25527 TATTATAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
33 7 0.18
34 2 0.05
35 16 0.42
36 4 0.11
37 3 0.08
38 6 0.16
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (34 bp):
AATTTTATAAAAATTATTATAATTATTATATTAT
Found at i:25518 original size:14 final size:14
Alignment explanation
Indices: 25497--25536 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
25487 TTTATAACAA
25497 ATTATTATAATTATT
1 ATTATTATAATT-TT
25512 A-TATTATAATTTT
1 ATTATTATAATTTT
25525 ATTATTATAATT
1 ATTATTATAATT
25537 GATAATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 3 0.12
14 20 0.83
15 1 0.04
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
ATTATTATAATTTT
Found at i:25554 original size:28 final size:28
Alignment explanation
Indices: 25497--25556 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
25487 TTTATAACAA
* * **
25497 ATTATTATAATTATTATATTATAATTTT
1 ATTATTATAATTATAATAATATAAGCTT
25525 ATTATTATAATTGATAATAATA-AAGCTT
1 ATTATTATAATT-ATAATAATATAAGCTT
25553 ATTA
1 ATTA
25557 GTCAAAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 20 0.74
29 7 0.26
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (28 bp):
ATTATTATAATTATAATAATATAAGCTT
Found at i:25865 original size:22 final size:21
Alignment explanation
Indices: 25840--25893 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
25830 TAATAATTAT
*
25840 TAATATAAATAGTAAATTAAAA
1 TAATATAAATA-TAAACTAAAA
* *
25862 TAATATATATTATAAACTAACA
1 TAATATA-AATATAAACTAAAA
25884 TAAT-TAAATA
1 TAATATAAATA
25894 AATAGATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
20 3 0.11
21 2 0.07
22 19 0.70
23 3 0.11
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (21 bp):
TAATATAAATATAAACTAAAA
Found at i:25943 original size:21 final size:20
Alignment explanation
Indices: 25899--25940 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 20
25889 AAATAAATAG
25899 ATAATAATTTATTATTATTTT
1 ATAATAATTTATTATTA-TTT
25920 ATAATAATATTATTAATTATT
1 ATAATAAT-TTATT-ATTATT
25941 ATATTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 7 0.37
23 4 0.21
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATAATAATTTATTATTATTT
Found at i:26154 original size:17 final size:17
Alignment explanation
Indices: 26119--26156 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
26109 TATTATTTTA
*
26119 ATTAATAATATATATTT
1 ATTAATAATATATAATT
26136 ATTAAGTAATATA-AATT
1 ATTAA-TAATATATAATT
26153 ATTA
1 ATTA
26157 TATATGACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (17 bp):
ATTAATAATATATAATT
Found at i:26270 original size:55 final size:54
Alignment explanation
Indices: 26206--26496 Score: 143
Period size: 55 Copynumber: 5.3 Consensus size: 54
26196 ATAATGTAAT
*
26206 ATATTTATAAATTATATATAACTTTAAATAAATGTTAAATTTATTTATAAACCTA
1 ATATTTATAAATTATATATAACTTTAAATAAATATTAAATTTATTTATAAA-CTA
* * * * * *
26261 ATATTTATAATTTAT-TAATAA-ATT-AATAATATAATAATTATTATATATAAATTA
1 ATATTTATAAATTATAT-ATAACTTTAAATAA-ATATTAAAT-TTATTTATAAACTA
* * * * * *
26315 ATAGGTCATAAATTATAT-T-A-TTTTAATTAATA--ATATATATTTATTAAA-TA
1 ATA-TTTATAAATTATATATAACTTTAAATAAATATTAAATTTATTTA-TAAACTA
** * * ** * ** *
26365 ATATAAAT-TATTATATATGACTATTTGATAACTATTATTTTTTATTAAATATATAATGTAA
1 ATATTTATAAATTATATATAACT-TTAAATAAATATTA-AATTTATT---TATA-AA-CT-A
*
26426 TATATTTATAAATTATATATAACTTTAAATAAATGTTAAATTTATTTATAAACCTA
1 -ATATTTATAAATTATATATAACTTTAAATAAATATTAAATTTATTTATAAA-CTA
*
26482 ATATTTATAATTTAT
1 ATATTTATAAATTAT
26497 TAATAAATTA
Statistics
Matches: 175, Mismatches: 38, Indels: 46
0.68 0.15 0.18
Matches are distributed among these distances:
48 7 0.04
49 3 0.02
50 11 0.06
51 7 0.04
52 8 0.05
53 11 0.06
54 20 0.11
55 57 0.33
56 2 0.01
57 5 0.03
58 8 0.05
60 1 0.01
61 7 0.04
62 16 0.09
63 12 0.07
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.48
Consensus pattern (54 bp):
ATATTTATAAATTATATATAACTTTAAATAAATATTAAATTTATTTATAAACTA
Found at i:26313 original size:14 final size:14
Alignment explanation
Indices: 26278--26382 Score: 54
Period size: 15 Copynumber: 7.1 Consensus size: 14
26268 TAATTTATTA
26278 ATAAATTAATA-AT
1 ATAAATTAATATAT
*
26291 ATAATAATTATTATAT
1 AT-A-AATTAATATAT
**
26307 ATAAATTAATAGGT
1 ATAAATTAATATAT
26321 CATAAATT-ATATTAT
1 -ATAAATTAATA-TAT
* *
26336 TTTAATTAATAATAT
1 ATAAATTAAT-ATAT
*
26351 ATATTTATTAA-ATAAT
1 ATA--AATTAATAT-AT
*
26367 ATAAATTATTATAT
1 ATAAATTAATATAT
26381 AT
1 AT
26383 GACTATTTGA
Statistics
Matches: 68, Mismatches: 13, Indels: 21
0.67 0.13 0.21
Matches are distributed among these distances:
13 2 0.03
14 25 0.37
15 26 0.38
16 10 0.15
17 5 0.07
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (14 bp):
ATAAATTAATATAT
Found at i:26333 original size:221 final size:221
Alignment explanation
Indices: 26101--26550 Score: 882
Period size: 221 Copynumber: 2.0 Consensus size: 221
26091 ATAATACAAT
*
26101 ATAAATTATATTATTTTAATTAATAATATATATTTATTAAGTAATATAAATTATTATATATGACT
1 ATAAATTATATTATTTTAATTAATAATATATATTTATTAAATAATATAAATTATTATATATGACT
*
26166 ATTTGATAACTATTATTTTTTATTAATTATATAATGTAATATATTTATAAATTATATATAACTTT
66 ATTTGATAACTATTATTTTTTATTAAATATATAATGTAATATATTTATAAATTATATATAACTTT
26231 AAATAAATGTTAAATTTATTTATAAACCTAATATTTATAATTTATTAATAAATTAATAATATAAT
131 AAATAAATGTTAAATTTATTTATAAACCTAATATTTATAATTTATTAATAAATTAATAATATAAT
26296 AATTATTATATATAAATTAATAGGTC
196 AATTATTATATATAAATTAATAGGTC
26322 ATAAATTATATTATTTTAATTAATAATATATATTTATTAAATAATATAAATTATTATATATGACT
1 ATAAATTATATTATTTTAATTAATAATATATATTTATTAAATAATATAAATTATTATATATGACT
26387 ATTTGATAACTATTATTTTTTATTAAATATATAATGTAATATATTTATAAATTATATATAACTTT
66 ATTTGATAACTATTATTTTTTATTAAATATATAATGTAATATATTTATAAATTATATATAACTTT
26452 AAATAAATGTTAAATTTATTTATAAACCTAATATTTATAATTTATTAATAAATTAATAATATAAT
131 AAATAAATGTTAAATTTATTTATAAACCTAATATTTATAATTTATTAATAAATTAATAATATAAT
26517 AATTATTATATATAAATTAATAGGTC
196 AATTATTATATATAAATTAATAGGTC
26543 ATAAATTA
1 ATAAATTA
26551 GTATATAATA
Statistics
Matches: 227, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
221 227 1.00
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (221 bp):
ATAAATTATATTATTTTAATTAATAATATATATTTATTAAATAATATAAATTATTATATATGACT
ATTTGATAACTATTATTTTTTATTAAATATATAATGTAATATATTTATAAATTATATATAACTTT
AAATAAATGTTAAATTTATTTATAAACCTAATATTTATAATTTATTAATAAATTAATAATATAAT
AATTATTATATATAAATTAATAGGTC
Found at i:26660 original size:25 final size:25
Alignment explanation
Indices: 26621--26668 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
26611 AAATTTTTTA
*
26621 ATTTAATCAATTAA-TATTATTTAAT
1 ATTTAATCAAATAATTA-TATTTAAT
*
26646 ATTTAATTAAATAATTATATTTA
1 ATTTAATCAAATAATTATATTTA
26669 TTAAATCCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
ATTTAATCAAATAATTATATTTAAT
Found at i:27144 original size:27 final size:26
Alignment explanation
Indices: 27114--27180 Score: 68
Period size: 24 Copynumber: 2.6 Consensus size: 26
27104 GAATATATTG
27114 AATATATTAAAATTTATATATTATAAT
1 AATATATTAAAATTTATATATT-TAAT
27141 AATATA-T--AATTCTATATATTTAAT
1 AATATATTAAAATT-TATATATTTAAT
* *
27165 TATAAATTAAATATTT
1 AATATATTAAA-ATTT
27181 TATTTAAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
24 12 0.36
25 9 0.27
26 1 0.03
27 8 0.24
28 3 0.09
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (26 bp):
AATATATTAAAATTTATATATTTAAT
Found at i:27145 original size:25 final size:24
Alignment explanation
Indices: 27106--27164 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
27096 ATAGTCATGA
*
27106 ATATATTGAAT-ATATTAAAATT-T
1 ATATATTTAATAATA-TAAAATTCT
*
27129 ATATATTATAATAATATATAATTCT
1 ATATATT-TAATAATATAAAATTCT
27154 ATATATTTAAT
1 ATATATTTAAT
27165 TATAAATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 7 0.23
24 13 0.42
25 11 0.35
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (24 bp):
ATATATTTAATAATATAAAATTCT
Found at i:27180 original size:19 final size:19
Alignment explanation
Indices: 27151--27204 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
27141 AATATATAAT
*
27151 TCTATATATTTAATTATAAA
1 TCTAAATATTTAATT-TAAA
*
27171 T-TAAATATTTTATTTAAA
1 TCTAAATATTTAATTTAAA
*
27189 TCTAATTGATTTAATT
1 TCTAAAT-ATTTAATT
27205 GTTAGATATC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 5 0.18
19 15 0.54
20 8 0.29
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.54
Consensus pattern (19 bp):
TCTAAATATTTAATTTAAA
Found at i:27595 original size:24 final size:22
Alignment explanation
Indices: 27556--27599 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
27546 AATATGTTTA
27556 TTAGTTTAAAACTAATTATATAG
1 TTAGTTTAAAACTAA-TATATAG
27579 TTAGTTTTAAATA-TAATATAT
1 TTAG-TTTAAA-ACTAATATAT
27600 TTTAATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 9 0.47
24 9 0.47
25 1 0.05
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.48
Consensus pattern (22 bp):
TTAGTTTAAAACTAATATATAG
Found at i:28262 original size:21 final size:21
Alignment explanation
Indices: 28238--28277 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
28228 ATTAATTAAT
28238 AATTA-ATAATTATTAATATTA
1 AATTATATAATTA-TAATATTA
*
28259 AATTATTTAATTATAATAT
1 AATTATATAATTATAATAT
28278 ACAATATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
AATTATATAATTATAATATTA
Found at i:29724 original size:181 final size:179
Alignment explanation
Indices: 29171--29766 Score: 555
Period size: 180 Copynumber: 3.3 Consensus size: 179
29161 TCAATAAATA
* * * *
29171 ATTATCTATTTCAAAACATTATGACATTTTGTTTTGTCATAAAACAACTGGTTCTATTCATGCAA
1 ATTATCTATTTCAAATCATTATGACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAA
* * * *
29236 GCATATTTTGAATAAAATAATA-TAAATTTATTAATATTCCAAAAATTAATAAGTATACT-TTTA
66 GCTTATTTGGAATAAAATAATACT-AATATATTAATATT-CAAAAATTAATAAGT-TAATATTTA
* * * * * * *
29299 GAAGATAAAGCTA-TTT-TCTAAACACATTCAAATAGTTATGACTATTTGAACA
128 AAAAATAAA-TTAGTTTATCCAAACA-ATTCAAATAGTTACGTCTATTTGAACT
* * * * * *
29351 ATTATCTATTTCAAATCATTATGACCA-TATGTTTTGTCATAAACCAATTATTTTTATTTAAACA
1 ATTATCTATTTCAAATCATTATGA-CATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACA
* * * *
29415 AGCTTATTTGGAATAAAATAATTCTAACTA-ATTAATATTCCAAAATTAATAAGTAAAAGATTTA
65 AGCTTATTTGGAATAAAATAATACTAA-TATATTAATATTCAAAAATTAATAAGT-TAATATTTA
* ** * *
29479 AAAAATAAATTTGTTTA-CCAAGTGAGTTCAAATAGTTACGAT-TGTTTGAA-T
128 AAAAATAAATTAGTTTATCCAA-ACAATTCAAATAGTTACG-TCTATTTGAACT
* * * *
29530 AATTATTTATTTCAAATCGTTATGATC-TTTTGTTTTGTTATAAAACAATTGTTTCCATTCATAC
1 -ATTATCTATTTCAAATCATTATGA-CATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATAC
* * *
29594 AAGTTTATTAGGAATAAAATAATACTAATATATTAACATTCTAAAAATTAATAAGTTGAATATTT
64 AAGCTTATTTGGAATAAAATAATACTAATATATTAATATTC-AAAAATTAATAAGTT-AATATTT
* * * * *
29659 AAAAAATTAATTAGTTTATCGAACCAATTCAAATAGTCACGTCCATTTGAACT
127 AAAAAATAAATTAGTTTATCCAAACAATTCAAATAGTTACGTCTATTTGAACT
* ** * * **
29712 ACTATCTATTTCAAATTGTTATGACATATTATTTTGTTGTAAAACAATTGTTTCT
1 ATTATCTATTTCAAATCATTATGACATTTTGTTTTGTCATAAAACAATTGTTTCT
29767 TATCGATCAA
Statistics
Matches: 335, Mismatches: 64, Indels: 33
0.78 0.15 0.08
Matches are distributed among these distances:
179 19 0.06
180 206 0.61
181 106 0.32
182 4 0.01
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.41
Consensus pattern (179 bp):
ATTATCTATTTCAAATCATTATGACATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAA
GCTTATTTGGAATAAAATAATACTAATATATTAATATTCAAAAATTAATAAGTTAATATTTAAAA
AATAAATTAGTTTATCCAAACAATTCAAATAGTTACGTCTATTTGAACT
Found at i:30455 original size:22 final size:22
Alignment explanation
Indices: 30430--30471 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
30420 ATATATTAAT
30430 TTTAAAT-ATTAAATCTAATTTA
1 TTTAAATAATTAAAT-TAATTTA
*
30452 TTTATATAATTAAATTAATT
1 TTTAAATAATTAAATTAATT
30472 AA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (22 bp):
TTTAAATAATTAAATTAATTTA
Done.